#pattern name	sequence name	start	stop	strand	score	p-value	q-value	matched sequence
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	60	80	-	29.2449	9.79e-13	2.16e-07	GGAGGAGGAGGAGGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	60	80	-	29.2449	9.79e-13	2.16e-07	GGAGGAGGAGGAGGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	57	77	-	29	1.74e-12	2.16e-07	GGAGGAGGAGGAGGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	57	77	-	29	1.74e-12	2.16e-07	GGAGGAGGAGGAGGGGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	32	52	+	28.7347	2.68e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	40	60	+	28.7347	2.68e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	55	75	-	28.7347	2.68e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	63	83	-	28.7347	2.68e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	31	51	-	28.6939	2.87e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	72	92	-	28.6939	2.87e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	72	92	-	28.6939	2.87e-12	2.16e-07	GGAGGAGGAAGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	30	50	-	28.2041	6.29e-12	3.44e-07	GGAGGAGGAGGAGGAGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	30	50	-	28.2041	6.29e-12	3.44e-07	GGAGGAGGAGGAGGAGGGAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	29	49	+	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	37	57	+	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	58	78	-	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	66	86	-	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	75	95	-	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	75	95	-	28.0816	7.89e-12	3.44e-07	GGAGGAGGAGGAAGAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	26	46	+	27.8367	1.2e-11	4.33e-07	GGAGGAGGAGGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	34	54	+	27.8367	1.2e-11	4.33e-07	GGAGGAGGAGGAGGAAGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	61	81	-	27.8367	1.2e-11	4.33e-07	GGAGGAGGAGGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	69	89	-	27.8367	1.2e-11	4.33e-07	GGAGGAGGAGGAGGAAGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	22	42	-	26.9796	4.31e-11	1.37e-06	AGAGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	63	83	-	26.9796	4.31e-11	1.37e-06	AGAGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	63	83	-	26.9796	4.31e-11	1.37e-06	AGAGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	60	80	-	26.9592	4.47e-11	1.37e-06	GGAGGAGGGCGAGGAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	44	64	+	26.7959	5.69e-11	1.44e-06	GGAGGAGGGAGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	52	72	+	26.7959	5.69e-11	1.44e-06	GGAGGAGGGAGAGGAAGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	43	63	-	26.7959	5.69e-11	1.44e-06	GGAGGAGGGAGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	51	71	-	26.7959	5.69e-11	1.44e-06	GGAGGAGGGAGAGGAAGAGGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	29	49	+	26.7347	6.09e-11	1.44e-06	GGAGGAGGAGGAGGAGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	66	86	-	26.7347	6.09e-11	1.44e-06	GGAGGAGGAGGAGGAGGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	66	86	-	26.7347	6.09e-11	1.44e-06	GGAGGAGGAGGAGGAGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	66	86	-	26.7347	6.09e-11	1.44e-06	GGAGGAGGAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	41	58	+	30.6974	6.22e-11	2.46e-05	GGAAGGAAGGAAGGAAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	41	58	+	30.6974	6.22e-11	2.46e-05	GGAAGGAAGGAAGGAAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	34	54	-	26.5918	7.64e-11	1.76e-06	GAAGGAGGAGGAAGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	19	39	-	26.3469	1.06e-10	2.22e-06	GGAGGAGGAGGAGAGGGGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	28	48	-	26.3265	1.09e-10	2.22e-06	GGAGGAAGAGGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	69	89	-	26.3265	1.09e-10	2.22e-06	GGAGGAAGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	69	89	-	26.3265	1.09e-10	2.22e-06	GGAGGAAGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	33	53	-	26.3061	1.12e-10	2.22e-06	GAGGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	33	53	-	26.3061	1.12e-10	2.22e-06	GAGGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	11	31	+	26.2449	1.22e-10	2.35e-06	GGAGGAGGAGGCGGAGGAGGA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	55	73	-	25.8361	1.48e-10	5.98e-05	TGGCCACCAGGGGGCAGTG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	55	73	-	25.8361	1.48e-10	5.98e-05	TGGCCACCAGGGGGCAGTG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	7	27	+	24.8387	1.57e-10	4.48e-05	CTTTACTTTCGCTTTCACTTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	19	39	+	24.8387	1.57e-10	4.48e-05	CTTTACTTTCGCTTTCACTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	19	39	+	24.8387	1.57e-10	4.48e-05	CTTTACTTTCGCTTTCACTTT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	63	83	-	25.9388	1.8e-10	3.32e-06	GGAGGAGGAGGGCGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	63	83	-	25.9388	1.8e-10	3.32e-06	GGAGGAGGAGGGCGAGGAGGA
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	82	+	22.7069	1.98e-10	5.31e-05	GCCCCGCCCCCCCCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	16	36	-	25.8571	2e-10	3.6e-06	GGAGGAGGAGAGGGGAGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	20	40	-	25.551	2.94e-10	5.18e-06	GGAGGAGGGAGGAAGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	54	74	-	25.5102	3.08e-10	5.21e-06	GGAGGAGGAGGGGGAGGAGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	54	74	-	25.5102	3.08e-10	5.21e-06	GGAGGAGGAGGGGGAGGAGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	31	51	+	25.4694	3.24e-10	5.37e-06	GGAGGAGGAGGAGGCGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	60	80	-	25.4082	3.51e-10	5.7e-06	GGAGGAGGGCGAGGAGGAGAA
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	7	21	-	22.569	4.38e-10	5.31e-05	GCCCCGCCCCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	40	+	22.569	4.38e-10	5.31e-05	GCCCCGCCCCCTCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	49	+	22.569	4.38e-10	5.31e-05	GCCCCGCCCCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	70	+	22.569	4.38e-10	5.31e-05	GCCCCGCCCCCTCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	14	34	+	25.102	5.1e-10	7.63e-06	GGAGGAGGCGGAGGAGGAGAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	35	55	+	25.0816	5.22e-10	7.63e-06	GGAGGAAGAGGAGGAGGGAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	43	63	+	25.0816	5.22e-10	7.63e-06	GGAGGAAGAGGAGGAGGGAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	52	72	-	25.0816	5.22e-10	7.63e-06	GGAGGAAGAGGAGGAGGGAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	60	80	-	25.0816	5.22e-10	7.63e-06	GGAGGAAGAGGAGGAGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	39	59	-	25.0612	5.34e-10	7.63e-06	GGAGGAGGGCAAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	39	59	-	25.0612	5.34e-10	7.63e-06	GGAGGAGGGCAAGGAGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	43	63	+	25.0204	5.6e-10	7.73e-06	GGAGGAGGGAAGGAGGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	52	72	-	25.0204	5.6e-10	7.73e-06	GGAGGAGGGAAGGAGGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	2	22	+	24.8571	6.77e-10	8.59e-06	GGAGGAGGGGGGAGGAGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	41	61	+	24.8571	6.77e-10	8.59e-06	AGAGGAGGAGGGAGAGGAAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	49	69	+	24.8571	6.77e-10	8.59e-06	AGAGGAGGAGGGAGAGGAAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	46	66	-	24.8571	6.77e-10	8.59e-06	AGAGGAGGAGGGAGAGGAAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	54	74	-	24.8571	6.77e-10	8.59e-06	AGAGGAGGAGGGAGAGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	27	47	-	24.8367	6.94e-10	8.59e-06	GGAGGAGGAGGAGGGAGAAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	27	47	-	24.8367	6.94e-10	8.59e-06	GGAGGAGGAGGAGGGAGAAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	47	67	+	24.6939	8.15e-10	9.93e-06	GAAGGAGGAGAAAGAGGAGGA
SP2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	50	64	-	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	62	76	-	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	25	+	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	31	+	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	6	19	-	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	6	19	-	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	57	70	-	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	84	97	-	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	90	103	-	22.7308	8.76e-10	6.33e-05	CCCCCGCCCCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	33	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	33	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	33	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	33	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	65	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	65	+	21.931	8.76e-10	5.31e-05	GCCCCGCCCCCGCCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	42	62	-	24.5306	9.8e-10	1.18e-05	GGAGGAGGAGGGCAAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	71	91	+	24.4898	1.03e-09	1.2e-05	GGAGGAGGGCGGGGGGAGGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	24	44	-	24.4898	1.03e-09	1.2e-05	GGAGGAGGGCGGGGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	24	44	-	24.449	1.08e-09	1.2e-05	GGAGGAGGAGGGAGAAAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	24	44	-	24.449	1.08e-09	1.2e-05	GGAGGAGGAGGGAGAAAGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	53	73	-	24.449	1.08e-09	1.2e-05	GGAGCAGGACGAGGAGGAGGG
SP4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	13	29	-	25.0909	1.13e-09	0.000204	CAGGCCACGCCCCCTCC
SP4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	57	73	+	25.0909	1.13e-09	0.000204	CAGGCCACGCCCCCTCC
SP4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	42	58	-	25.0909	1.13e-09	0.000204	CAGGCCACGCCCCCTCC
SP4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	86	102	+	25.0909	1.13e-09	0.000204	CAGGCCACGCCCCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	1	15	-	21.8621	1.27e-09	6.26e-05	GCCCCGCCCCCCGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	18	32	-	21.8621	1.27e-09	6.26e-05	GCCCCGCCCCCCGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	73	+	21.8621	1.27e-09	6.26e-05	GCCCCGCCCCCCGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	25	45	-	24.2449	1.35e-09	1.42e-05	GGAAGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	51	71	-	24.2449	1.35e-09	1.42e-05	CGAGGAGGAGGAGGAGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	60	80	-	24.2449	1.35e-09	1.42e-05	GGAGGAGGAGAGGAGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	66	86	-	24.2449	1.35e-09	1.42e-05	GGAAGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	66	86	-	24.2449	1.35e-09	1.42e-05	GGAAGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	16	36	-	24.1633	1.48e-09	1.52e-05	GGGGGAGGAGAGGGGAGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	19	39	-	24.1633	1.48e-09	1.52e-05	GGAGGAGGAGGAGGAGGGATG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	39	59	+	24.0816	1.62e-09	1.56e-05	GGGGGAGGAGGAGCAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	39	59	+	24.0816	1.62e-09	1.56e-05	GGGGGAGGAGGAGCAGGGAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	66	86	+	24.0816	1.62e-09	1.56e-05	GGGGGAGGAGGAGCAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	29	49	-	24.0816	1.62e-09	1.56e-05	GGGGGAGGAGGAGCAGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	56	76	-	24.0816	1.62e-09	1.56e-05	GGGGGAGGAGGAGCAGGGAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	32	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	32	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	32	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	32	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	46	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	28	41	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	57	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	57	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	57	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	64	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	64	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	39	52	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	51	64	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	58	71	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	87	+	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	63	76	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	71	84	-	21.8269	1.75e-09	6.33e-05	GCCCCGCCCCCGCC
SP2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	27	41	-	21.7586	1.8e-09	7.79e-05	GCCCCGCCCCCTCCG
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	83	103	+	23.9184	1.94e-09	1.83e-05	GGAGGAGGGAGGGAGGGTGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	12	32	-	23.9184	1.94e-09	1.83e-05	GGAGGAGGGAGGGAGGGTGGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	7	21	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	7	21	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	7	21	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	8	22	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	8	22	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	9	23	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	9	23	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	9	23	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	9	23	+	19.5962	2.12e-09	0.000201	AAATGGACCAATCAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	78	98	-	23.8367	2.12e-09	1.95e-05	GGAGGAAGGCGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	78	98	-	23.8367	2.12e-09	1.95e-05	GGAGGAAGGCGAGGAGGAGGA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	11	28	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	11	28	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	12	29	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	12	29	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	12	29	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	12	29	-	22.9878	2.18e-09	0.000285	ATCCTGCTGATTGGTCCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	70	+	21.7241	2.24e-09	7.79e-05	GCCCCGCCCCCTGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	37	54	+	23.5658	2.26e-09	0.000447	AGAAGGAAGGAAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	37	54	+	23.5658	2.26e-09	0.000447	AGAAGGAAGGAAGGAAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	45	65	+	23.7755	2.26e-09	1.99e-05	GGGGGAGGGAGGGGGAGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	68	88	+	23.7755	2.26e-09	1.99e-05	GGAGGAGGAGGGCGGGGGGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	27	47	-	23.7755	2.26e-09	1.99e-05	GGAGGAGGAGGGCGGGGGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	50	70	-	23.7755	2.26e-09	1.99e-05	GGGGGAGGGAGGGGGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	10	30	-	23.7347	2.37e-09	2.02e-05	GAGGGAGGGAGGGAGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	14	34	-	23.7347	2.37e-09	2.02e-05	GAGGGAGGGAGGGAGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	18	38	-	23.7347	2.37e-09	2.02e-05	GAGGGAGGGAGGGAGGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	80	100	+	23.6531	2.58e-09	2.16e-05	GGAGGAGCAGCGGGAGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	15	35	-	23.6531	2.58e-09	2.16e-05	GGAGGAGCAGCGGGAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	21	41	-	23.6327	2.63e-09	2.16e-05	GGAGGAGGGAGAAAGGGAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	21	41	-	23.6327	2.63e-09	2.16e-05	GGAGGAGGGAGAAAGGGAGAA
EGR1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	50	+	21.5577	2.82e-09	9.4e-05	CCCCCGCCCCCGCA
EGR1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	65	78	-	21.5577	2.82e-09	9.4e-05	CCCCCGCCCCCGCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	24	38	-	23.25	2.86e-09	0.00109	AGGATGACTCAGCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	24	38	-	23.25	2.86e-09	0.00109	AGGATGACTCAGCAG
SP2	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	48	62	-	21.4828	2.96e-09	7.79e-05	GCCCCGCCCCTCCCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	5	25	-	23.4694	3.13e-09	2.54e-05	GAAGGAGCGGGAGGAGGGAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	13	33	-	23.449	3.19e-09	2.57e-05	GGAGGAGGAGGGATGGGAGGG
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	25	39	-	22.2424	3.31e-09	0.00151	CAGGATGACTCAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	25	39	-	22.2424	3.31e-09	0.00151	CAGGATGACTCAGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	77	97	+	23.3673	3.47e-09	2.7e-05	GGAGGAGGAGCAGCGGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	18	38	-	23.3673	3.47e-09	2.7e-05	GGAGGAGGAGCAGCGGGAGGA
EBF1	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	20	33	-	21.2295	3.48e-09	0.00285	ATTCCCAAGGGACT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	24	44	+	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	24	44	+	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	55	75	+	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	40	60	-	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	40	60	-	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	71	91	-	23.3265	3.61e-09	2.7e-05	AGAGGACGAGGGGGAGGGGGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	4	18	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	4	18	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	44	58	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	70	84	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	70	84	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	70	84	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	70	84	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	71	85	-	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	44	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	44	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	45	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
SP2	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	71	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	76	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	76	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	76	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	76	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCCCTTCCC
SP2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	111	+	21.3448	3.79e-09	7.79e-05	GCCCCGCCTCCTCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	36	55	-	24.8532	3.79e-09	0.00297	CCACCCCCCACCCCCACCCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	83	+	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	83	+	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	60	73	-	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	60	73	-	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	62	75	-	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	62	75	-	21.4423	3.89e-09	0.000105	CCCCCGCCCCCTCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	13	33	-	23.2449	3.93e-09	2.88e-05	GGAGGAGAGGGGAGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	13	33	-	23.2449	3.93e-09	2.88e-05	GGAGGAGAGGGGAGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	7	27	+	23.1633	4.27e-09	3.05e-05	GAAGGAGGAAGGGGGAAGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	7	27	+	23.1633	4.27e-09	3.05e-05	GAAGGAGGAAGGGGGAAGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	7	27	+	23.1633	4.27e-09	3.05e-05	GAAGGAGGAAGGGGGAAGGGG
RFX5	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	+	24.5345	4.3e-09	0.0016	GGTTGCTATGGCAACC
RFX5	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	-	24.5	4.65e-09	0.0016	GGTTGCCATAGCAACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	28	42	-	21.1379	4.81e-09	7.79e-05	GTCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	28	42	-	21.1379	4.81e-09	7.79e-05	GTCCCGCCCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	28	42	-	21.1379	4.81e-09	7.79e-05	GTCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	28	42	-	21.1379	4.81e-09	7.79e-05	GTCCCGCCCCCCCCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	42	62	-	23.0408	4.83e-09	3.42e-05	GAAGGAGGAGGGCAAGGAGGA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	27	41	-	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	57	71	-	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	70	84	-	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	58	+	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	58	+	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	58	+	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
SP2	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	88	+	21.1207	5e-09	7.79e-05	GCCCCGCCCCCGCCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	34	54	+	22.9796	5.14e-09	3.61e-05	GGAGGAGGAGGCGGGAGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	17	37	+	22.9388	5.35e-09	3.73e-05	GGAGGCGGAGGAGGAGAAGGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	13	27	-	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	13	27	-	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	13	27	-	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	13	27	-	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	60	+	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	60	+	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	85	+	21.0862	5.44e-09	7.79e-05	GCCCCGCCCCCGGCC
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	29	43	+	20.9394	5.85e-09	0.00157	TTCTCGCGAGATCTG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	72	86	-	20.9394	5.85e-09	0.00157	TTCTCGCGAGATCTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	31	51	+	22.8163	6.06e-09	4.18e-05	GGAGGAGGCGGGGAGGAGGGG
SP2	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	14	28	-	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	29	43	-	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCTCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	38	52	-	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCTCCT
SP2	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	46	60	-	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCCGCG
SP2	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	69	+	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	77	+	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	77	+	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCTCCT
SP2	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	101	+	21.0517	6.13e-09	7.79e-05	GCCCCGCCCCCCGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	9	29	+	22.7755	6.31e-09	4.29e-05	GGGGGAGGAGGAGGGAGGGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	16	36	-	22.7755	6.31e-09	4.29e-05	GGAGGAGGAGGAGGGATGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	39	59	+	22.7143	6.72e-09	4.42e-05	GGGGGAGGAGGAACAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	39	59	+	22.7143	6.72e-09	4.42e-05	GGGGGAGGAGGAACAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	29	49	-	22.7143	6.72e-09	4.42e-05	GGGGGAGGAGGAACAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	29	49	-	22.7143	6.72e-09	4.42e-05	GGGGGAGGAGGAACAGGGAGG
TBP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	49	63	+	16.3194	7.06e-09	0.00161	CTATAAAAGGCGCGG
TBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	49	63	+	16.3194	7.06e-09	0.00161	CTATAAAAGGCGCGG
TBP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	49	63	+	16.3194	7.06e-09	0.00161	CTATAAAAGGCGCGG
TBP	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	52	66	-	16.3194	7.06e-09	0.00161	CTATAAAAGGCGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	18	38	-	22.6531	7.13e-09	4.66e-05	GGAGCAGGAGGGGGCGGAGAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	26	40	-	20.9655	7.15e-09	8.4e-05	GCCCCGCCCCCGCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	26	40	-	20.9655	7.15e-09	8.4e-05	GCCCCGCCCCCGCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	43	57	-	20.9655	7.15e-09	8.4e-05	GCCCCGCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	43	57	-	20.9655	7.15e-09	8.4e-05	GCCCCGCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	65	+	20.9655	7.15e-09	8.4e-05	GCCCCGCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	54	68	-	20.931	7.35e-09	8.4e-05	GCCCCGCCCCCCCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	54	68	-	20.931	7.35e-09	8.4e-05	GCCCCGCCCCCCCGG
RFX2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	+	23.6143	7.68e-09	0.00294	GGTTGCTATGGCAACC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	85	105	-	22.5714	7.74e-09	5.01e-05	GGAGGATGAAGAGGAGGTGGA
SP2	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	9	23	-	20.9138	7.83e-09	8.82e-05	GGCCCGCCCCCTCCC
KLF14	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	14	27	-	21.7931	8.04e-09	0.00142	GGCCACGCCCCCTC
KLF14	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	43	56	-	21.7931	8.04e-09	0.00142	GGCCACGCCCCCTC
KLF14	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	59	72	+	21.7931	8.04e-09	0.00142	GGCCACGCCCCCTC
KLF14	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	88	101	+	21.7931	8.04e-09	0.00142	GGCCACGCCCCCTC
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	44	64	+	22.5306	8.06e-09	5.13e-05	GGAGAAGGAGGAGAAAGAGGA
RFX2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	-	23.5429	8.21e-09	0.00294	GGTTGCCATAGCAACC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	26	46	+	22.5102	8.22e-09	5.13e-05	CGGGGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	69	89	-	22.5102	8.22e-09	5.13e-05	CGGGGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	69	89	-	22.5102	8.22e-09	5.13e-05	CGGGGAGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	69	89	-	22.5102	8.22e-09	5.13e-05	CGGGGAGGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	42	59	+	19.1579	8.31e-09	0.00109	GGGAGGAGGGAAGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	56	73	-	19.1579	8.31e-09	0.00109	GGGAGGAGGGAAGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	70	90	+	22.4898	8.39e-09	5.19e-05	GGAGGAGGGGAAGCAGAGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	16	36	-	22.4694	8.56e-09	5.21e-05	GAGGGAGGAAGGGAGGGAGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	53	73	+	22.449	8.74e-09	5.21e-05	AGAGGAAGAGGAAGAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	34	54	-	22.449	8.74e-09	5.21e-05	AGAGGAAGAGGAAGAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	61	81	+	22.449	8.74e-09	5.21e-05	AGAGGAAGAGGAAGAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	42	62	-	22.449	8.74e-09	5.21e-05	AGAGGAAGAGGAAGAGGAGGA
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	32	46	-	20.7759	9.05e-09	9.9e-05	GCCCCGCCCCCCCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	24	+	20.7759	9.05e-09	9.9e-05	GCCCCGCCCCCCCTC
RFX3	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	-	22.4394	9.16e-09	0.00371	GGTTGCCATAGCAACC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	65	85	+	22.3878	9.28e-09	5.5e-05	GGAGGAGGAGGAAGTGAGAGG
SP2	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	79	93	-	20.7586	9.53e-09	0.000101	GCCCCGCCCCCCACC
SP2	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	36	+	20.7586	9.53e-09	0.000101	GCCCCGCCCCCCACC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	48	68	-	22.3469	9.65e-09	5.64e-05	GGAGGAGGAGGAGGAGGGCAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	51	71	-	22.3469	9.65e-09	5.64e-05	CGAGGAGGAGAAGGAGGAGGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	76	93	-	18.9474	9.67e-09	0.00109	GGAAGGAAGTAAGGAAAG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	22	+	21.1538	9.91e-09	0.00026	TCCCCGCCCCCGCC
RFX3	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	+	22.3182	1.01e-08	0.00371	GGTTGCTATGGCAACC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	8	24	-	23.5273	1.04e-08	0.0012	CTGGCCCCGCCCCCTCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	32	48	+	23.5273	1.04e-08	0.0012	CTGGCCCCGCCCCCTCC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	45	58	-	19.3182	1.05e-08	0.00232	GGGGCCGGGGCCTG
SP2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	60	74	-	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	68	82	-	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	47	+	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	47	+	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	47	+	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	55	+	20.7069	1.06e-08	0.000101	GCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	64	+	20.6897	1.08e-08	0.000101	CCCCCGCCCCCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	64	+	20.6897	1.08e-08	0.000101	CCCCCGCCCCCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	64	+	20.6897	1.08e-08	0.000101	CCCCCGCCCCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	64	+	20.6897	1.08e-08	0.000101	CCCCCGCCCCCCCCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	29	49	+	22.2245	1.09e-08	6.25e-05	AGGGGAGGGGGGGGGAGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	29	49	+	22.2245	1.09e-08	6.25e-05	AGGGGAGGGGGGGGGAGAAGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	15	28	-	21.0192	1.1e-08	0.000264	CTCCCGCCCCCGCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	30	44	+	20.6212	1.11e-08	0.00157	GTCTCGCGAGATCTG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	30	44	+	20.6212	1.11e-08	0.00157	GTCTCGCGAGATCTG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	71	85	-	20.6212	1.11e-08	0.00157	GTCTCGCGAGATCTG
SP2	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	60	74	-	20.6724	1.13e-08	0.000102	GCCCCGCCCCTCCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	70	84	-	20.6724	1.13e-08	0.000102	GCCCCGCCCCTCCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	55	+	20.6724	1.13e-08	0.000102	GCCCCGCCCCTCCCG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	38	58	+	22.1837	1.13e-08	6.33e-05	GGAAGAGGAGGAGGGAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	46	66	+	22.1837	1.13e-08	6.33e-05	GGAAGAGGAGGAGGGAGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	49	69	-	22.1837	1.13e-08	6.33e-05	GGAAGAGGAGGAGGGAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	57	77	-	22.1837	1.13e-08	6.33e-05	GGAAGAGGAGGAGGGAGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	19	39	+	22.1224	1.2e-08	6.66e-05	GGAGGAGGGGAGGCGGGAAAG
EGR1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	43	+	21	1.2e-08	0.000264	CCCCCTCCCCCGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	63	+	21	1.2e-08	0.000264	CCCCCTCCCCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	52	65	-	21	1.2e-08	0.000264	CCCCCTCCCCCGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	72	85	-	21	1.2e-08	0.000264	CCCCCTCCCCCGCC
SP4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	38	54	-	23.4	1.22e-08	0.0012	GAAGCCCCGCCCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	34	48	-	20.6207	1.26e-08	0.000109	GCCCCGCCCCCCCAC
SP2	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	71	85	-	20.6207	1.26e-08	0.000109	GCCCCGCCCCCCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	44	+	20.6207	1.26e-08	0.000109	GCCCCGCCCCCCCAC
SP2	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	81	+	20.6207	1.26e-08	0.000109	GCCCCGCCCCCCCAC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	+	23.3448	1.26e-08	0.0016	GGTTGCCATAGTAACC
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	+	23.3448	1.26e-08	0.0016	GGTTGCCATAGTAACC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	+	23.3448	1.26e-08	0.0016	GGTTGCCATAGTAACC
SRF	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	22	37	+	23.2131	1.27e-08	0.00574	TGCCCATATAAGGGAA
SRF	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	78	93	-	23.2131	1.27e-08	0.00574	TGCCCATATAAGGGAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	9	26	-	18.3816	1.39e-08	0.00122	GGAAGTGAGGAAGGAAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	9	26	-	18.3816	1.39e-08	0.00122	GGAAGTGAGGAAGGAAGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	32	52	+	21.9592	1.4e-08	7.66e-05	GAAGGAGGGAGAGATGGGAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	63	83	-	21.9592	1.4e-08	7.66e-05	GAAGGAGGGAGAGATGGGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	59	73	-	20.5517	1.45e-08	0.000121	CCCCCGCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	59	73	-	20.5517	1.45e-08	0.000121	CCCCCGCCCCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	84	+	20.5517	1.45e-08	0.000121	CCCCCGCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	84	+	20.5517	1.45e-08	0.000121	CCCCCGCCCCCTCCC
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	-	23.2241	1.46e-08	0.0016	GGTTACTATGGCAACC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	-	23.2241	1.46e-08	0.0016	GGTTACTATGGCAACC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	-	23.2241	1.46e-08	0.0016	GGTTACTATGGCAACC
SP2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	29	+	20.5345	1.51e-08	0.000121	GCCCCGCCTCCTCCG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	64	+	20.6538	1.52e-08	0.000264	GCCCCGCCCCCGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	25	45	+	21.8571	1.54e-08	8.37e-05	GGAGGCGGGGAGAGAGGAGGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	24	+	20.5172	1.56e-08	0.000121	GCCCCGCCTCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	24	+	20.5172	1.56e-08	0.000121	GCCCCGCCTCCCCGC
SP2	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	45	+	20.5172	1.56e-08	0.000121	GCCCCGCCCCTCCGC
SP2	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	25	39	-	20.5172	1.56e-08	0.000121	GCCCCGCCCCTCCGC
SP2	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	90	+	20.5172	1.56e-08	0.000121	GCCCCGCCCCTCCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	70	84	-	20.5172	1.56e-08	0.000121	GCCCCGCCCCTCCGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	8	21	-	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	39	+	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	48	+	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	28	41	-	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	30	43	-	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	38	51	-	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	39	52	-	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	69	+	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	76	+	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	76	+	20.5385	1.63e-08	0.000264	GCCCCGCCCCCTCC
POU4F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	2	15	+	19.622	1.7e-08	0.00391	ATGAATAATTAATG
POU4F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	2	15	+	19.622	1.7e-08	0.00391	ATGAATAATTAATG
POU4F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	2	15	+	19.622	1.7e-08	0.00391	ATGAATAATTAATG
POU4F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	2	15	+	19.622	1.7e-08	0.00391	ATGAATAATTAATG
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	73	87	-	20.7576	1.71e-08	0.00844	TCAGTTTCAATTTCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	63	83	-	21.7347	1.72e-08	9.32e-05	AGAGGAGGAGGAGAGGAGAGG
EGR1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	34	+	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	65	+	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	65	+	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	40	53	-	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	40	53	-	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	40	53	-	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	40	53	-	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	81	94	-	20.4231	1.74e-08	0.000264	GCTCCGCCCCCGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	68	88	+	21.6939	1.79e-08	9.62e-05	GGAGGAGGAAGTGAGAGGAGG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	8	25	-	21.5244	1.79e-08	0.00189	AGGGCGCTGATTGGTGCC
SP2	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	37	51	-	20.4138	1.8e-08	0.000138	GCCCCGCCCCCTCCA
SP4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	53	69	+	23.0182	1.81e-08	0.0012	GAGGCCCCGCCCCCTCC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	73	87	+	20.7273	1.85e-08	0.00844	TAAGTTTCAGTTTCC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	24	44	+	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	24	44	+	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	24	44	+	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	24	44	+	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	81	101	-	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	81	101	-	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	81	101	-	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	81	101	-	21.6327	1.89e-08	9.63e-05	AAAGGAGGGGGTGGAGGGAGG
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	28	41	-	20.4038	1.91e-08	0.000286	CGCCCGCCCCCGCC
POU4F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	2	17	+	19.748	1.92e-08	0.00869	ATGAATAATTAATGTG
POU4F3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	2	17	+	19.748	1.92e-08	0.00869	ATGAATAATTAATGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	5	25	+	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	5	25	+	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	10	30	-	21.5918	1.96e-08	9.63e-05	GGAGGAGGGATGGGAGGGGTA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	23	43	-	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	23	43	-	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	72	92	+	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	90	110	-	21.5918	1.96e-08	9.63e-05	GGAGGAGGCGGGGCAGGGGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	11	25	-	20.3448	1.98e-08	0.000148	GCCCCGCCCCCCGCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	46	+	20.3448	1.98e-08	0.000148	GCCCCGCCCCCCGCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	11	27	+	22.9091	1.99e-08	0.0012	GAGGCCACGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	11	27	+	22.9091	1.99e-08	0.0012	GAGGCCACGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	11	27	+	22.9091	1.99e-08	0.0012	GAGGCCACGCCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	11	27	+	22.9091	1.99e-08	0.0012	GAGGCCACGCCCCCACC
RFX4	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	+	21.0606	2.01e-08	0.0118	GGTTGCTATGGCAACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	31	+	20.3462	2.02e-08	0.000297	GCCCCGCCCACGCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	1	21	+	21.5306	2.08e-08	0.000101	GGGGGAGGAGCAGGGAGAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	72	92	-	21.5306	2.08e-08	0.000101	GGGGGAGGAGCAGGGAGAAGG
EGR1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	10	23	-	20.3077	2.13e-08	0.000307	GCCCCACCCCCGCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	84	104	-	21.4898	2.16e-08	0.000104	GATGGAGGGAAAGGGGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	50	70	+	21.449	2.24e-08	0.000107	GGAGGAGAAAGAGGAGGAGTA
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	8	28	+	21.4286	2.28e-08	0.000108	CGAGGAGGAGGAGGCGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	37	57	-	21.4286	2.28e-08	0.000108	AGAGAAGGAGGAGGAAGAGGA
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	21	35	-	20.2069	2.33e-08	0.000171	GCCCCGCCCTCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	94	+	20.2069	2.33e-08	0.000171	GCCCCGCCCTCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	36	50	-	20.1552	2.41e-08	0.000171	GCCCCGCCCCCGCGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	77	+	20.1552	2.41e-08	0.000171	GCCCCGCCCCCGCGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	77	+	20.1552	2.41e-08	0.000171	GCCCCGCCCCCGCGG
SP2	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	79	+	20.1552	2.41e-08	0.000171	GCCCCGCCCCCGCGG
NFYA	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	83	100	+	21.2805	2.41e-08	0.00189	TGCATGCTGATTGGTCCA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	15	32	-	21.2805	2.41e-08	0.00189	TGCATGCTGATTGGTCCA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	15	32	-	21.2805	2.41e-08	0.00189	TGCATGCTGATTGGTCCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	27	40	-	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	27	40	-	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	37	50	-	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	64	+	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	44	57	-	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	44	57	-	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	76	+	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	76	+	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	78	+	20.2692	2.45e-08	0.000308	GCCCCGCCCCCGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	39	59	+	21.3469	2.46e-08	0.000114	GGGGAAGGGGGAGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	37	57	-	21.3469	2.46e-08	0.000114	GGAGGAGGGGGCGCAGAAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	76	-	21.3469	2.46e-08	0.000114	GGGGAAGGGGGAGGGAGGGGG
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	98	+	20.1379	2.49e-08	0.000175	GCCCCGCCTCCCTCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	28	41	+	22.4394	2.53e-08	0.0152	TGATGACGTCACCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	42	62	+	21.3061	2.55e-08	0.000116	GGAGGAGGAGCAGGGAGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	42	62	+	21.3061	2.55e-08	0.000116	GGAGGAGGAGCAGGGAGGGGC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	69	89	+	21.3061	2.55e-08	0.000116	GGAGGAGGAGCAGGGAGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	26	46	-	21.3061	2.55e-08	0.000116	GGAGGAGGAGCAGGGAGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	53	73	-	21.3061	2.55e-08	0.000116	GGAGGAGGAGCAGGGAGGGGC
SP8	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	15	26	-	19.0395	2.56e-08	0.00427	GCCACGCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	44	55	-	19.0395	2.56e-08	0.00427	GCCACGCCCCCT
SP8	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	71	+	19.0395	2.56e-08	0.00427	GCCACGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	100	+	19.0395	2.56e-08	0.00427	GCCACGCCCCCT
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	+	22.3143	2.58e-08	0.00294	GGTTGCCATAGTAACC
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	+	22.3143	2.58e-08	0.00294	GGTTGCCATAGTAACC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	+	22.3143	2.58e-08	0.00294	GGTTGCCATAGTAACC
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	-	22.3	2.61e-08	0.00294	GGTTACTATGGCAACC
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	-	22.3	2.61e-08	0.00294	GGTTACTATGGCAACC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	-	22.3	2.61e-08	0.00294	GGTTACTATGGCAACC
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	+	21.4091	2.66e-08	0.00371	GGTTGCCATAGTAACC
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	+	21.4091	2.66e-08	0.00371	GGTTGCCATAGTAACC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	+	21.4091	2.66e-08	0.00371	GGTTGCCATAGTAACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	15	29	-	20.0862	2.67e-08	0.000183	GCCCCGCCCCCCGGG
SP2	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	62	+	20.0862	2.67e-08	0.000183	GCCCCGCCCCCCGGG
SP2	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	53	67	-	20.0862	2.67e-08	0.000183	GCCCCGCCCCCCGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	68	88	+	21.2449	2.7e-08	0.000121	GAAGGAGGCGGAGGAGGAGCA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	27	47	-	21.2449	2.7e-08	0.000121	GAAGGAGGCGGAGGAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	94	+	21.2245	2.75e-08	0.000122	GGAGGCGGGGGTGGAGGGAGA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	8	22	+	21.7763	2.8e-08	0.00533	GGGCTGACTCAGCAC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	8	22	+	21.7763	2.8e-08	0.00533	GGGCTGACTCAGCAC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	1	19	+	21.6393	2.82e-08	0.00569	TCACCAGCAGAGGGCAGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	1	19	+	21.6393	2.82e-08	0.00569	TCACCAGCAGAGGGCAGCG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	12	32	+	21.1837	2.85e-08	0.000124	GAAGGAGAAAGGAAGGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	79	99	+	21.1837	2.85e-08	0.000124	GAAGGAGAAAGGAAGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	16	36	-	21.1837	2.85e-08	0.000124	GAAGGAGAAAGGAAGGGAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	83	103	-	21.1837	2.85e-08	0.000124	GAAGGAGAAAGGAAGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	34	54	+	21.1633	2.9e-08	0.000126	GGAGGCGGGGAGGAGGGGGGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	28	42	-	20	2.95e-08	0.000195	GCCCCGCCCCCAGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	28	42	-	20	2.95e-08	0.000195	GCCCCGCCCCCAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	28	42	-	20	2.95e-08	0.000195	GCCCCGCCCCCAGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	28	42	-	20	2.95e-08	0.000195	GCCCCGCCCCCAGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	37	57	-	21.1429	2.96e-08	0.000128	GGAGGAGGGGGCGCAGAGGGA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	30	44	+	19.1892	2.97e-08	0.0249	CTGGGTCAAAGGGCA
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	20	34	-	19.9655	3.06e-08	0.000201	GCCCCGCCCCTCCCT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	29	40	-	19.4	3.11e-08	0.0076	GGCGACCACCGA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	29	40	-	19.4	3.11e-08	0.0076	GGCGACCACCGA
ZBTB7A	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	75	86	+	19.4	3.11e-08	0.0076	GGCGACCACCGA
EGR1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	19	32	-	20.0769	3.14e-08	0.000389	GCCCCGCCCCCACC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	43	57	+	21.2	3.18e-08	0.0157	CGAGGTCAGGGGTCA
SP2	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	28	+	19.9483	3.21e-08	0.000204	GTCCCGCCCCTGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	27	41	-	19.9483	3.21e-08	0.000204	GGCCCGCCCCCTCGC
SP2	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	66	+	19.9483	3.21e-08	0.000204	GTCCCGCCCCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	49	63	-	19.9483	3.21e-08	0.000204	GTCCCGCCCCTGCCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	28	41	-	22.2576	3.3e-08	0.0152	TGGTGACGTCATCA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	10	27	-	21.0122	3.3e-08	0.002	GTCCTGCTGATTGGTCCA
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	10	27	-	21.0122	3.3e-08	0.002	GTCCTGCTGATTGGTCCA
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	10	27	-	21.0122	3.3e-08	0.002	GTCCTGCTGATTGGTCCA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	-	21.1818	3.33e-08	0.00371	GGTTACTATGGCAACC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	-	21.1818	3.33e-08	0.00371	GGTTACTATGGCAACC
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	-	21.1818	3.33e-08	0.00371	GGTTACTATGGCAACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	12	25	-	20.0577	3.35e-08	0.000404	ACCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	12	25	-	20.0577	3.35e-08	0.000404	ACCCCGCCCCCGCC
SP2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	26	+	19.9138	3.36e-08	0.000207	CCCCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	5	19	-	19.9138	3.36e-08	0.000207	CCCCCGCCCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	5	19	-	19.9138	3.36e-08	0.000207	CCCCCGCCCCCGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	89	103	-	19.9138	3.36e-08	0.000207	CCCCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	27	41	-	19.8966	3.41e-08	0.000207	GCCCCGCCTCCGCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	70	84	-	19.8966	3.41e-08	0.000207	GCCCCGCCTCCGCCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	6	26	+	20.9796	3.43e-08	0.000146	GGAGGAGGAGGCGAAGAGGAG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	24	44	+	21.0968	3.48e-08	0.00497	CTTTACTTTTGCTTTCACTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	36	56	+	21.0968	3.48e-08	0.00497	CTTTACTTTTGCTTTCACTTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	36	56	+	21.0968	3.48e-08	0.00497	CTTTACTTTTGCTTTCACTTT
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	34	54	+	20.9388	3.55e-08	0.000146	GGAGGAGGAAGGAGGGAGGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	80	100	+	20.9388	3.55e-08	0.000146	GGGGGAGGAGGGAGGGAGGGT
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	15	35	-	20.9388	3.55e-08	0.000146	GGGGGAGGAGGGAGGGAGGGT
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	61	81	-	20.9388	3.55e-08	0.000146	GGAGGAGGAAGGAGGGAGGCA
SP2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	62	+	19.8793	3.57e-08	0.000213	GCCCCGCCCCCACGC
SP2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	53	67	-	19.8793	3.57e-08	0.000213	GCCCCGCCCCCACGC
Rfx1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	12	25	-	20.5862	3.61e-08	0.00937	GTTGCCATAGCAAC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	21	41	+	20.9184	3.62e-08	0.000146	GGAGGAGAGGAGGCAGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	84	104	-	20.9184	3.62e-08	0.000146	CGAGGAGCGGGAGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	84	104	-	20.9184	3.62e-08	0.000146	CGAGGAGCGGGAGGAGGAGGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	11	27	+	22.1818	3.67e-08	0.00189	CAGGCCCCGCCCACCTT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	11	27	+	22.1818	3.67e-08	0.00189	CAGGCCCCGCCCACCTT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	60	80	+	20.898	3.68e-08	0.000146	GGAGGAGGCAGGGAAGGAGCA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	24	38	-	19.8621	3.69e-08	0.000215	GCCCCGCCCCTGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	24	38	-	19.8621	3.69e-08	0.000215	GCCCCGCCCCTGGCC
SP2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	91	+	19.8621	3.69e-08	0.000215	GCCCCGCCCCTGGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	3	16	-	20.0192	3.72e-08	0.000442	CCGCCGCCCCCTCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	22	42	-	20.8776	3.75e-08	0.000148	TGTGGAGGAGGAGGAGAGGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	65	+	19.8448	3.76e-08	0.000218	GCCCCGCCCCCGCAC
YY1	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	14	25	-	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	68	79	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	86	97	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	86	97	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	86	97	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	87	98	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	89	100	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	89	100	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	89	100	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	89	100	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	89	100	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	90	101	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	95	106	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	95	106	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
YY1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	96	107	+	19.75	3.79e-08	0.00238	CAAGATGGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	37	54	+	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	37	54	+	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	37	54	+	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	37	54	+	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	37	54	+	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	11	28	-	14.2105	3.85e-08	0.00153	GGCAGGAAGGAAGGAAAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	23	43	-	20.8163	3.96e-08	0.000155	GAGGGAGGAGGGAGGAAGGGA
SP2	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	26	40	-	19.8276	3.99e-08	0.00022	GCCCCGCCCCTTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	33	47	-	19.8276	3.99e-08	0.00022	GCCCCGCCCCTTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	51	65	+	19.8276	3.99e-08	0.00022	GGCCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	51	65	+	19.8276	3.99e-08	0.00022	GGCCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	65	+	19.8276	3.99e-08	0.00022	GCCCCGCCCCTCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	65	+	19.8276	3.99e-08	0.00022	GCCCCGCCCCTCGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	50	64	-	19.8276	3.99e-08	0.00022	GCCCCGCCCCTCGCG
SP4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	62	78	-	22.0545	4.06e-08	0.00189	CAGGCCCCGCCCCTTTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	61	74	-	19.9423	4.07e-08	0.00047	CCCCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	61	74	-	19.9423	4.07e-08	0.00047	CCCCCGCCCCCGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	20	40	-	20.7755	4.1e-08	0.000158	GAGGGAGAGCGGGGAGGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	20	40	-	20.7755	4.1e-08	0.000158	GAGGGAGAGCGGGGAGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	20	40	-	20.7755	4.1e-08	0.000158	GAGGGAGAGCGGGGAGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	20	40	-	20.7755	4.1e-08	0.000158	GAGGGAGAGCGGGGAGGGGGG
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	26	39	+	20.5345	4.13e-08	0.00937	GGTGCCATGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	26	39	+	20.5345	4.13e-08	0.00937	GGTGCCATGGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	26	39	+	20.5345	4.13e-08	0.00937	GGTGCCATGGCAAC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	10	30	-	20.7347	4.25e-08	0.000163	GAGGGAGCGAGGGAGGGAGGG
ZBTB33	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	18	32	+	19.7424	4.26e-08	0.00333	CTCTCGCGAGAGCCG
ZBTB33	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	83	97	-	19.7424	4.26e-08	0.00333	CTCTCGCGAGAGCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	45	+	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	45	+	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGTCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	45	+	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGTCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	45	+	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGTCG
SP2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	47	+	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGCCA
SP2	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	38	52	-	19.7759	4.38e-08	0.000232	GCCCCGCCCCCGCCA
SP4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	32	48	-	21.9273	4.51e-08	0.00189	CAGGCCACGCCCCCAGC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	65	85	+	20.6531	4.56e-08	0.000174	GGGGAAGGAGGCGGAGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	30	50	-	20.6531	4.56e-08	0.000174	GGGGAAGGAGGCGGAGGAGGA
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	40	+	19.2545	4.62e-08	0.0434	GATGACGTCACC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	40	+	20.6939	4.62e-08	0.0434	GATGACGTCACC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	20	31	+	20.918	4.62e-08	0.0096	AACCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	20	31	+	20.918	4.62e-08	0.0096	AACCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	20	31	+	20.918	4.62e-08	0.0096	AACCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	20	31	+	20.918	4.62e-08	0.0096	AACCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	20	31	+	20.8364	4.62e-08	0.0106	AACCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	20	31	+	20.8364	4.62e-08	0.0106	AACCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	20	31	+	20.8364	4.62e-08	0.0106	AACCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	20	31	+	20.8364	4.62e-08	0.0106	AACCCGGAAGTG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	61	75	-	19.7414	4.64e-08	0.000234	CCCCCGCCCCCTCCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	61	75	-	19.7414	4.64e-08	0.000234	CCCCCGCCCCCTCCG
KLF14	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	5	18	+	20.569	4.65e-08	0.00205	GGCCACGCCCACCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	15	+	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	15	+	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
SP2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	17	31	-	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	92	+	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
SP2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	98	+	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
SP2	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	100	114	-	19.7241	4.69e-08	0.000234	CCCCCGCCCCCCCGC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	99	112	-	18.9091	4.74e-08	0.00232	GCCGCCGGGGCCTG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	61	+	19.8462	4.8e-08	0.000539	GCCCCGCCCCCGCT
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	8	28	-	20.5918	4.81e-08	0.00018	GGAGGAGGCGGGGCTAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	22	42	-	20.5918	4.81e-08	0.00018	TGTGGAGGGGGAGGAGAGGGG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	94	107	+	18.8939	4.85e-08	0.00232	CCCGCCGGGGCCTG
SP2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	44	+	19.7069	4.85e-08	0.000234	GCCCCGCCCCCCGCA
SP2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	71	85	-	19.7069	4.85e-08	0.000234	GCCCCGCCCCCCGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	13	33	+	20.5714	4.9e-08	0.00018	GGAGCAGAGGGGGCGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	13	33	+	20.5714	4.9e-08	0.00018	GGAGCAGAGGGGGCGGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	72	89	-	13.7105	4.93e-08	0.00177	GGGAGGAAGGAAGCAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	72	89	-	13.7105	4.93e-08	0.00177	GGGAGGAAGGAAGCAGAG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	24	38	-	19.6667	4.93e-08	0.00333	TTCTCGCGAGATCCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	77	91	+	19.6667	4.93e-08	0.00333	TTCTCGCGAGATCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	13	27	-	19.6897	4.97e-08	0.000234	GCCCCGCCCCTTGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	102	+	19.6897	4.97e-08	0.000234	GCCCCGCCCCTTGCG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	93	105	+	19.6721	4.97e-08	0.0462	GGATGATGCAATC
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	13	33	+	20.551	4.99e-08	0.00018	GAAGGCGGGGGGGCGGGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	38	58	+	20.551	4.99e-08	0.00018	GGGGGAAGGGGGAGGGAGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	42	62	+	20.551	4.99e-08	0.00018	GGAGGAGGAACAGGGAGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	42	62	+	20.551	4.99e-08	0.00018	GGAGGAGGAACAGGGAGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	26	46	-	20.551	4.99e-08	0.00018	GGAGGAGGAACAGGGAGGGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	26	46	-	20.551	4.99e-08	0.00018	GGAGGAGGAACAGGGAGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	57	77	-	20.551	4.99e-08	0.00018	GGGGGAAGGGGGAGGGAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	82	102	-	20.551	4.99e-08	0.00018	GAAGGCGGGGGGGCGGGGGGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	31	+	19.8269	5.04e-08	0.000539	CCCCCTCCCCCGCA
EGR1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	61	+	19.8269	5.04e-08	0.000539	CCCCCTCCCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	67	+	19.8269	5.04e-08	0.000539	CCCCCTCCCCCGCA
EGR1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	48	61	-	19.8269	5.04e-08	0.000539	CCCCCTCCCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	54	67	-	19.8269	5.04e-08	0.000539	CCCCCTCCCCCGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	63	+	19.6724	5.04e-08	0.000234	GCCCCGCCCCTCGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	73	93	+	20.5102	5.16e-08	0.000184	GGAGGAGGAGAAGCAGTGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	27	47	-	20.5102	5.16e-08	0.000184	AGAGGAGGGAGGAGGGAGGAA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	38	52	+	19.6061	5.18e-08	0.00333	CTCTCGCGAGGTTTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	38	52	+	19.6061	5.18e-08	0.00333	CTCTCGCGAGGTTTC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	74	94	-	20.4898	5.25e-08	0.000187	GGAGGAGGAGTGAGTGGAGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	77	90	-	19.8077	5.3e-08	0.00056	CCTCCACCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	5	18	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	5	18	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	35	48	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	41	54	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	41	54	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	41	54	+	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	61	74	-	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	67	80	-	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	67	80	-	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	67	80	-	20.5172	5.34e-08	0.00205	TGCCACGCCCCCCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	71	91	+	20.4694	5.35e-08	0.000189	AGGGGAGGCGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	23	43	+	20.449	5.44e-08	0.000189	GGAGGAAAAGGAGGAGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	23	43	+	20.449	5.44e-08	0.000189	GGAGGAAAAGGAGGAGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	23	43	+	20.449	5.44e-08	0.000189	GGAGGAAAAGGAGGAGGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	23	43	+	20.449	5.44e-08	0.000189	GGAGGAAAAGGAGGAGGAGGC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	72	92	-	20.449	5.44e-08	0.000189	GGAGGAAAAGGAGGAGGAGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	27	43	+	21.6727	5.45e-08	0.00189	TAGGCCCCGCCCCCCCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	35	51	-	21.6727	5.45e-08	0.00189	TAGGCCCCGCCCCCCCA
SP4	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	64	80	+	21.6727	5.45e-08	0.00189	TAGGCCCCGCCCCCCCA
SP4	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	72	88	-	21.6727	5.45e-08	0.00189	TAGGCCCCGCCCCCCCA
POU4F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	2	17	+	21.2727	5.48e-08	0.0248	ATGAATAATTAATGTG
POU4F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	2	17	+	21.2727	5.48e-08	0.0248	ATGAATAATTAATGTG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	21	+	20.6429	5.53e-08	0.0157	AGGGGTGAGAGGTCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	21	+	20.6429	5.53e-08	0.0157	AGGGGTGAGAGGTCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	52	72	-	20.4286	5.54e-08	0.000191	GAAGGAGGGAAGGGGTGGGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	77	+	19.5862	5.6e-08	0.000234	GCCCCGCCCCCCTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	77	+	19.5862	5.6e-08	0.000234	GCCCCGCCCCCCTGG
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	-	23.1148	5.62e-08	0.0176	TGACAGGTGTCA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	-	23.1148	5.62e-08	0.0176	TGACAGGTGTCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	-	23.1148	5.62e-08	0.0176	TGACAGGTGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	-	22.7959	5.62e-08	0.0176	TGACAGGTGTCA
PKNOX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	-	22.7959	5.62e-08	0.0176	TGACAGGTGTCA
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	-	22.7959	5.62e-08	0.0176	TGACAGGTGTCA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	20	32	+	21.0862	5.62e-08	0.0127	AACCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	20	32	+	21.0862	5.62e-08	0.0127	AACCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	20	32	+	21.0862	5.62e-08	0.0127	AACCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	20	32	+	21.0862	5.62e-08	0.0127	AACCCGGAAGTGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	52	72	-	20.3878	5.73e-08	0.000197	GAAGGAGGGAAGGGGTGGGAA
SP2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	32	-	19.569	5.77e-08	0.000234	GCCCCGCCCCCGGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	20	34	-	19.569	5.77e-08	0.000234	GGCCCGCCCCCTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	20	34	-	19.569	5.77e-08	0.000234	GGCCCGCCCCCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	20	34	-	19.569	5.77e-08	0.000234	GGCCCGCCCCCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	37	-	19.569	5.77e-08	0.000234	GCCCCGCCCCCGGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	37	-	19.569	5.77e-08	0.000234	GCCCCGCCCCCGGCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	37	-	19.569	5.77e-08	0.000234	GCCCCGCCCCCGGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	37	-	19.569	5.77e-08	0.000234	GCCCCGCCCCCGGCT
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	25	41	-	20.2347	5.8e-08	0.0437	GGTTCATCGGGAGGGCA
KLF14	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	33	46	+	20.4828	5.81e-08	0.00205	GGCCACGCCCCTCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	69	82	-	20.4828	5.81e-08	0.00205	GGCCACGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	69	82	-	20.4828	5.81e-08	0.00205	GGCCACGCCCCTCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	69	82	-	20.4828	5.81e-08	0.00205	GGCCACGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	69	82	-	20.4828	5.81e-08	0.00205	GGCCACGCCCCTCT
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	3	17	+	19.7091	5.83e-08	0.023	GGCCCCCCGCAGTGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	3	17	+	19.7091	5.83e-08	0.023	GGCCCCCCGCAGTGA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	39	+	19.5517	5.85e-08	0.000234	TCCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	53	+	19.5517	5.85e-08	0.000234	TCCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	10	24	-	19.5517	5.85e-08	0.000234	GCCCCGCCCCTCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	10	24	-	19.5517	5.85e-08	0.000234	GCCCCGCCCCTCCTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	40	54	-	19.5517	5.85e-08	0.000234	TCCCCGCCCCCCCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	75	+	19.5345	6.04e-08	0.000234	GCCCCGCCCCTCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	50	+	19.7308	6.09e-08	0.0006	CCCCCACCCACGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	50	+	19.7308	6.09e-08	0.0006	CCCCCACCCACGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	50	+	19.7308	6.09e-08	0.0006	CCCCCACCCACGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	50	+	19.7308	6.09e-08	0.0006	CCCCCACCCACGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	65	78	-	19.7308	6.09e-08	0.0006	CCCCCACCCACGCC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	63	76	-	18.7424	6.11e-08	0.00232	CGGGCCCGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	63	76	-	18.7424	6.11e-08	0.00232	CGGGCCCGGGCCTG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	5	25	-	20.5323	6.19e-08	0.00757	TCTTACTTTCACTTTTGGCTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	79	+	19.5	6.21e-08	0.000234	GCCCCGCCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	79	+	19.5	6.21e-08	0.000234	GCCCCGCCCTCCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	79	+	19.5	6.21e-08	0.000234	GCCCCGCCCTCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	31	+	19.7115	6.22e-08	0.0006	CCCCCTCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	33	+	19.7115	6.22e-08	0.0006	CCCCCTCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	75	+	19.7115	6.22e-08	0.0006	CCCCCTCCCCCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	49	63	-	19.4828	6.24e-08	0.000234	GCCCCGCCTCTGCCC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	-	20.1061	6.26e-08	0.0118	GGTTACTATGGCAACC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	-	20.1061	6.26e-08	0.0118	GGTTACTATGGCAACC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	-	20.1061	6.26e-08	0.0118	GGTTACTATGGCAACC
SP4	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	25	41	-	21.4545	6.4e-08	0.00189	CTGACCCCGCCCCCTTT
SP4	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	74	90	+	21.4545	6.4e-08	0.00189	CTGACCCCGCCCCCTTT
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	22	42	+	20.2449	6.48e-08	0.000221	GGAGGCGGAGGGGTGGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	73	93	-	20.2449	6.48e-08	0.000221	GGAGGCGGAGGGGTGGGGGGG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	17	31	-	19.4848	6.52e-08	0.00354	TTCTCGCGAGGCTTG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	84	98	+	19.4848	6.52e-08	0.00354	TTCTCGCGAGGCTTG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	52	66	+	20.6557	6.54e-08	0.0151	GACCACGCCCTCTTC
RFX4	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	11	26	-	20.0758	6.55e-08	0.0118	GGTTGCCATAGCAACC
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	10	30	+	20.2245	6.59e-08	0.000224	GGGGGAGGGGAGAGGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	14	34	-	20.2041	6.7e-08	0.000225	GAGGGAGGGAGCGAGGGAGGG
EGR3	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	38	52	+	21.3103	6.7e-08	0.0155	CCCCGCCCCCGCACC
EGR3	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	63	77	-	21.3103	6.7e-08	0.0155	CCCCGCCCCCGCACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	17	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	17	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	22	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	22	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	27	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	27	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	32	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	32	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	42	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	42	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	42	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	44	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	44	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	44	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	44	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	44	+	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	87	+	19.4138	6.76e-08	0.000234	GCCCCGCCTCTCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	1	15	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	1	15	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	6	20	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	6	20	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	9	23	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	11	25	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	11	25	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	12	26	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	14	28	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	16	30	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	16	30	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	17	31	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	19	33	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	21	35	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	21	35	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	28	42	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	28	42	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	28	42	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	28	42	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	33	47	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	33	47	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	33	47	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	33	47	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	38	52	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	38	52	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	38	52	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	38	52	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	71	85	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	73	87	-	19.4138	6.76e-08	0.000234	GCCCCGCCCCGCCCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	40	53	-	19.6346	6.8e-08	0.000648	TCCCCACCCCCGCC
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	12	26	+	18.5962	6.81e-08	0.00484	CCATGGACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	12	26	+	18.5962	6.81e-08	0.00484	CCATGGACCAATCAG
NFYB	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	89	103	-	18.5962	6.81e-08	0.00484	CCATGGACCAATCAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	50	70	+	20.1837	6.82e-08	0.000225	GGGAGAGGAAGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	58	78	+	20.1837	6.82e-08	0.000225	GGGAGAGGAAGAGGAAGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	92	112	+	20.1837	6.82e-08	0.000225	GGAGGAGGGGTCAGAGGAGAA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	3	23	-	20.1837	6.82e-08	0.000225	GGAGGAGGGGTCAGAGGAGAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	37	57	-	20.1837	6.82e-08	0.000225	GGGAGAGGAAGAGGAAGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	45	65	-	20.1837	6.82e-08	0.000225	GGGAGAGGAAGAGGAAGAGGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	18	32	-	19.3966	7.04e-08	0.00024	GGCCCGCCCCCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	58	72	-	19.3966	7.04e-08	0.00024	GCCCCACCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	58	72	-	19.3966	7.04e-08	0.00024	GCCCCACCCCCTCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	62	82	+	20.1429	7.06e-08	0.000232	TGAGGAGGAGGAGGAAGTGAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	1	17	+	21.2909	7.18e-08	0.00189	CAGGCCCCGCCCCCACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	1	17	+	21.2909	7.18e-08	0.00189	CAGGCCCCGCCCCCACG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	1	17	+	21.2909	7.18e-08	0.00189	CAGGCCCCGCCCCCACG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	1	17	+	21.2909	7.18e-08	0.00189	CAGGCCCCGCCCCCACG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	56	76	+	20.1224	7.18e-08	0.000234	AGAGGAGGAGAGGAGGAGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	90	110	+	20.1224	7.18e-08	0.000234	AGAGGAGGAGAGGAGGAGAGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	14	28	-	19.3793	7.19e-08	0.00024	GCCCCGCCCCCCGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	14	28	-	19.3793	7.19e-08	0.00024	GCCCCGCCCCCCGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	14	28	-	19.3793	7.19e-08	0.00024	GCCCCGCCCCCCGGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	14	28	-	19.3793	7.19e-08	0.00024	GCCCCGCCCCCCGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	14	28	-	19.3793	7.19e-08	0.00024	GCCCCGCCCCCCGGT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	35	48	-	18.6818	7.19e-08	0.00232	CGCGCCCCGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	35	48	-	18.6818	7.19e-08	0.00232	CGCGCCCCGGCCTG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	31	51	+	20.102	7.31e-08	0.000237	AGGGGAGGAGGAAGGAGGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	64	84	-	20.102	7.31e-08	0.000237	AGGGGAGGAGGAAGGAGGGAG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	14	28	-	20.6714	7.42e-08	0.043	CGCCCCCCGCGGCGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	67	80	-	20.1379	7.64e-08	0.00225	GGACACGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	67	80	-	20.1379	7.64e-08	0.00225	GGACACGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	67	80	-	20.1379	7.64e-08	0.00225	GGACACGCCCCCTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	67	80	-	20.1379	7.64e-08	0.00225	GGACACGCCCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	14	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	14	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	14	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	14	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	15	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	15	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	15	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	15	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	17	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	20	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	1	11	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	1	11	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	22	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	3	13	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	23	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	3	13	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	5	15	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	6	16	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	8	18	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	8	18	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	9	19	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	29	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	29	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	29	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	29	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	11	21	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	32	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	15	25	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	36	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	16	26	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	16	26	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	17	27	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	17	27	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	17	27	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	17	27	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	38	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	18	28	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	19	29	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	40	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	41	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	41	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	41	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	41	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	42	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	22	32	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	43	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	24	34	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	24	34	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	45	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	45	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	45	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	27	37	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	27	37	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	27	37	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	27	37	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	28	38	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	28	38	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	29	39	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	30	40	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	30	40	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	31	41	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	31	41	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	32	42	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	32	42	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	32	42	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	32	42	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	33	43	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	33	43	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	54	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	54	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	54	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	36	46	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	56	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	56	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	57	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	57	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	57	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	57	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	57	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	58	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	58	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	38	48	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	58	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	59	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	40	50	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	61	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	61	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	41	51	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	61	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	61	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	42	52	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	42	52	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	62	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	64	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	65	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	66	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	66	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	47	57	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	47	57	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	68	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	68	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	68	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	68	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	69	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	50	60	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	51	61	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	53	63	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	53	63	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	73	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	74	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	54	64	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	75	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	56	66	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	56	66	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	56	66	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	57	67	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	57	67	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	77	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	58	68	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	78	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	58	68	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	58	68	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	81	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	61	71	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	82	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	84	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	66	76	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	66	76	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	66	76	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	67	77	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	67	77	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	87	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	67	77	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	67	77	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	74	84	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	75	85	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	75	85	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	97	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	83	93	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	106	+	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	92	102	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	100	110	-	19.1538	7.65e-08	0.00037	GCCCCGCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	45	+	19.3276	7.66e-08	0.000247	CCCCCGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	45	+	19.3276	7.66e-08	0.000247	CCCCCGCCTCCTCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	4	18	-	19.3276	7.66e-08	0.000247	GCCCCGCCCCTCCCA
SP2	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	18	32	-	19.3276	7.66e-08	0.000247	GCCCCGCCCCCACCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	23	37	-	19.3276	7.66e-08	0.000247	GTCCCGCCCCCTCGT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	61	+	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	61	+	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	61	+	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	61	+	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	12	26	-	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	12	26	-	19.3103	7.73e-08	0.000247	GCCCCGCCCCCGGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	64	+	19.5385	7.75e-08	0.000671	CTCCCGCCCACGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	64	+	19.5385	7.75e-08	0.000671	CTCCCGCCCACGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	17	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	6	17	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	6	17	-	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	36	47	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	53	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	42	53	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	53	+	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	62	73	-	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	68	79	-	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	68	79	-	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	68	79	-	18.6711	7.77e-08	0.00427	GCCACGCCCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	44	+	19.2759	7.94e-08	0.000252	GCCCCGCCCCGTCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	13	33	-	20	7.97e-08	0.000257	GGAGGGGGAGGGGGAGGGGAG
POU4F3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	2	17	+	18.7087	8.02e-08	0.0181	ATGAATAATTAATGTA
POU4F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	2	17	+	18.7087	8.02e-08	0.0181	ATGAATAATTAATGTA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	34	+	19.2586	8.09e-08	0.000252	TCCCCGCCCCCTCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	34	+	19.2586	8.09e-08	0.000252	TCCCCGCCCCCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	51	+	19.2586	8.09e-08	0.000252	TCCCCGCCCCCTCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	51	+	19.2586	8.09e-08	0.000252	TCCCCGCCCCCTCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	26	40	-	19.2586	8.09e-08	0.000252	GCCCCGCCCCTTCAC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	29	+	19.5	8.23e-08	0.000671	GGCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	29	+	19.5	8.23e-08	0.000671	GGCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	38	+	19.5	8.23e-08	0.000671	GGCCCGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	38	+	19.5	8.23e-08	0.000671	GGCCCGCCCCCGCC
SP4	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	19	35	+	21.0727	8.35e-08	0.00189	GAGACCACGCCCACTCT
SP4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	31	47	-	21.0727	8.35e-08	0.00189	GAGACCACGCCCACTCT
SP4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	68	84	+	21.0727	8.35e-08	0.00189	GAGACCACGCCCACTCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	3	23	+	19.9388	8.39e-08	0.000269	GGTGGAGGAGGAGGCGAAGAG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	68	79	-	19.0769	8.41e-08	0.00416	CAAAATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	68	79	-	19.0769	8.41e-08	0.00416	CAAAATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	91	102	+	19.0769	8.41e-08	0.00416	CAAAATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	91	102	+	19.0769	8.41e-08	0.00416	CAAAATGGCGGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	31	+	19.2069	8.56e-08	0.000266	GTCCCGCCCCTCCCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	9	29	+	19.898	8.68e-08	0.000277	AGGGGAGGATGGGGGTGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	12	32	+	19.898	8.68e-08	0.000277	GAGGGAGGGAGGCAGGGAGGG
EGR1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	14	27	-	19.4615	8.7e-08	0.000671	CCCCCACCCCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	20	33	-	19.4615	8.7e-08	0.000671	CCCCCACCCCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	26	39	-	19.4615	8.7e-08	0.000671	CCCCCACCCCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	32	45	-	19.4615	8.7e-08	0.000671	CCCCCACCCCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	38	51	-	19.4615	8.7e-08	0.000671	CCCCCACCCCCACC
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	13	30	-	20.0976	8.72e-08	0.00432	CCCCTGCTGATTGGCCCA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	13	30	-	20.0976	8.72e-08	0.00432	CCCCTGCTGATTGGCCCA
KLF14	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	5	18	-	20.0345	8.9e-08	0.00237	GGCCACGCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	49	+	19.1897	8.92e-08	0.00027	GCCCCGCCCCCAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	49	+	19.1897	8.92e-08	0.00027	GCCCCGCCCCCAGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	62	+	19.1897	8.92e-08	0.00027	GCCCCGCCCCCGCTG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	41	55	-	19.1897	8.92e-08	0.00027	GCCCCGCCTCCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	41	55	-	19.1897	8.92e-08	0.00027	GCCCCGCCTCCTCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	41	55	-	19.1897	8.92e-08	0.00027	GCCCCGCCTCCTCCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	20	40	+	19.8571	8.98e-08	0.000281	CGGGGAGGAAAAGGAGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	20	40	+	19.8571	8.98e-08	0.000281	CGGGGAGGAAAAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	20	40	+	19.8571	8.98e-08	0.000281	CGGGGAGGAAAAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	20	40	+	19.8571	8.98e-08	0.000281	CGGGGAGGAAAAGGAGGAGGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	75	95	-	19.8571	8.98e-08	0.000281	CGGGGAGGAAAAGGAGGAGGA
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	-	20.3966	9.06e-08	0.00725	CGTTGCCATGGCACCC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	-	20.3966	9.06e-08	0.00725	CGTTGCCATGGCACCC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	-	20.3966	9.06e-08	0.00725	CGTTGCCATGGCACCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	21	41	+	19.8367	9.13e-08	0.000285	AAGGGAGGGGGAGAGAGGGGG
EGR1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	4	17	-	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	7	20	-	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	56	+	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	41	54	-	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	41	54	-	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	80	+	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	80	+	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	59	72	-	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	99	+	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	111	+	19.4231	9.17e-08	0.000671	TCCCCTCCCCCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	26	+	19.1552	9.22e-08	0.000274	GCCCCGCCCCCGGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	39	53	-	19.1552	9.22e-08	0.000274	GCTCCGCCCCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	39	53	-	19.1552	9.22e-08	0.000274	GCTCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	39	53	-	19.1552	9.22e-08	0.000274	GCTCCGCCCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	39	53	-	19.1552	9.22e-08	0.000274	GCTCCGCCCCCGCCC
CTCF	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	41	+	20.2295	9.22e-08	0.0124	TGCCCGCCAGGGGGCGCTC
CTCF	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	74	92	-	20.2295	9.22e-08	0.0124	TGCCCGCCAGGGGGCGCTC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	6	26	-	19.8163	9.29e-08	0.000288	GAGGGAGGGAGGGAGGGAGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	49	+	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	49	+	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	39	52	-	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	39	52	-	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	39	52	-	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	39	52	-	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	39	52	-	19.4038	9.3e-08	0.000671	TCCCCGCCCCCACC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	16	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	6	16	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	24	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	24	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	24	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	24	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	30	40	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	36	46	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	52	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	42	52	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	52	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	70	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	79	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	99	+	17.2846	9.31e-08	0.00272	GCCACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	6	16	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	16	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	24	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	24	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	24	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	24	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	30	40	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	36	46	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	52	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	52	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	42	52	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	70	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	79	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	99	+	19.2759	9.31e-08	0.000641	GCCACGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	3	13	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	7	17	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	16	26	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	31	41	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	35	45	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	45	55	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	61	71	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	63	73	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	69	79	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	69	79	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	69	79	-	17.2846	9.31e-08	0.00272	GCCACGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	3	13	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	7	17	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	16	26	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	31	41	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	35	45	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	45	55	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	61	71	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	63	73	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	69	79	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	69	79	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	69	79	-	19.2759	9.31e-08	0.000641	GCCACGCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	21	+	19.1379	9.42e-08	0.000278	TCCCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	21	+	19.1379	9.42e-08	0.000278	TCCCCGCCCCTCCCC
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	4	24	+	19.7959	9.45e-08	0.000289	TGGGGAGGGGGGAGGGGTGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	60	80	-	19.7959	9.45e-08	0.000289	GGAGGAGGAGGAGGCGGTGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	60	80	-	19.7959	9.45e-08	0.000289	GGAGGAGGAGGAGGCGGTGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	91	111	-	19.7959	9.45e-08	0.000289	TGGGGAGGGGGGAGGGGTGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	5	18	-	19.3654	9.54e-08	0.000671	GCCCCGCCCCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	5	18	-	19.3654	9.54e-08	0.000671	GCCCCGCCCCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	53	66	-	19.3654	9.54e-08	0.000671	GCCCCGCCCCCTCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	53	66	-	19.3654	9.54e-08	0.000671	GCCCCGCCCCCTCA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	19	32	-	19.3462	9.67e-08	0.000671	CCTCCGCCCCCGCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	95	+	19.3462	9.67e-08	0.000671	CCTCCGCCCCCGCT
SP4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	31	47	+	20.8	9.92e-08	0.00189	GTGGCCACGCCCCTCTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	68	84	-	20.8	9.92e-08	0.00189	GTGGCCACGCCCCTCTC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	68	84	-	20.8	9.92e-08	0.00189	GTGGCCACGCCCCTCTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	68	84	-	20.8	9.92e-08	0.00189	GTGGCCACGCCCCTCTC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	68	84	-	20.8	9.92e-08	0.00189	GTGGCCACGCCCCTCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	56	70	-	19.1034	9.97e-08	0.000293	CCCCCGCCCCCGCCG
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	26	37	-	19.2903	1.02e-07	0.0477	GCTAAAAATAGA
MEF2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	26	37	-	19.2903	1.02e-07	0.0477	GCTAAAAATAGA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	28	44	-	20.7455	1.03e-07	0.00189	CAAGCCCCGCCCCCGCC
SP4	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	71	87	+	20.7455	1.03e-07	0.00189	CAAGCCCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	71	87	-	20.7455	1.03e-07	0.00189	CAAGCCCCGCCCCCGCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	18	38	+	19.6939	1.03e-07	0.00031	AGGGGAGGAGCGGGAGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	18	38	+	19.6939	1.03e-07	0.00031	AGGGGAGGAGCGGGAGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	18	38	+	19.6939	1.03e-07	0.00031	AGGGGAGGAGCGGGAGGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	18	38	+	19.6939	1.03e-07	0.00031	AGGGGAGGAGCGGGAGGAGGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	13	26	+	19.8966	1.03e-07	0.00237	GGCCACGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	13	26	+	19.8966	1.03e-07	0.00237	GGCCACGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	13	26	+	19.8966	1.03e-07	0.00237	GGCCACGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	13	26	+	19.8966	1.03e-07	0.00237	GGCCACGCCCCCAC
SP8	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	6	17	+	18.6053	1.03e-07	0.00458	GCCACGCCCACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	18	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	18	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	18	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	18	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	42	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
SP2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	43	57	-	19.069	1.04e-07	0.000297	GTCCCGCCCCTTCCT
SP2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	72	+	19.069	1.04e-07	0.000297	GTCCCGCCCCTTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	78	+	19.069	1.04e-07	0.000297	GCCCCGCCCCCACGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	24	44	-	19.6735	1.05e-07	0.000314	GAGAGAGGAGGGGGAGGGGAG
SP4	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	19	35	+	20.7091	1.05e-07	0.00189	CTGGCCCCGCCCCCCAC
SP4	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	80	96	-	20.7091	1.05e-07	0.00189	CTGGCCCCGCCCCCCAC
KLF14	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	21	34	+	19.8793	1.07e-07	0.00237	GACCACGCCCACTC
KLF14	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	70	83	+	19.8793	1.07e-07	0.00237	GACCACGCCCACTC
KLF14	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	32	45	-	19.8793	1.07e-07	0.00237	GACCACGCCCACTC
Rfx1	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	30	43	+	19.5345	1.07e-07	0.0106	GTGGCCATGGCAAC
SP4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	39	55	-	20.6727	1.08e-07	0.00189	TAAGCCCCGCCCCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	18	31	-	19.2308	1.08e-07	0.000734	CCCCCACCCCCGCT
EGR1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	97	+	19.2308	1.08e-07	0.000734	CCCCCACCCCCGCT
Zfx	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	66	79	-	18.4091	1.08e-07	0.00232	GGCGCCGCGGCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	21	+	19.0345	1.09e-07	0.0003	GCCCCGCCCCCAGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	44	+	19.0345	1.09e-07	0.0003	GCCCCGCCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	44	+	19.0345	1.09e-07	0.0003	GCCCCGCCCCCAGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	44	+	19.0345	1.09e-07	0.0003	GCCCCGCCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	44	+	19.0345	1.09e-07	0.0003	GCCCCGCCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	46	+	19.0345	1.09e-07	0.0003	CCCCCGCCCCCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	46	+	19.0345	1.09e-07	0.0003	CCCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	46	+	19.0345	1.09e-07	0.0003	CCCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	46	+	19.0345	1.09e-07	0.0003	CCCCCGCCCCCCGCG
EGR1	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	47	+	19.1731	1.1e-07	0.000734	TCCCCGCCCCCGCT
EGR1	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	68	81	-	19.1731	1.1e-07	0.000734	TCCCCGCCCCCGCT
Pou2f3	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	8	23	-	18.4146	1.11e-07	0.0999	ATGTATGCAAATGAAA
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	13	27	-	18.7115	1.12e-07	0.0639	GGGTCACGCTGCCCC
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	-	21.4037	1.12e-07	0.034	TGACAGGTGTCA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	-	21.4037	1.12e-07	0.034	TGACAGGTGTCA
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	-	21.4037	1.12e-07	0.034	TGACAGGTGTCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	-	21.5385	1.12e-07	0.0329	TGACAGGTGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	-	21.5385	1.12e-07	0.0329	TGACAGGTGTCA
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	-	21.5385	1.12e-07	0.0329	TGACAGGTGTCA
SP4	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	27	43	+	20.6	1.13e-07	0.00189	CTCGCCCCGCCCCCTTT
SP4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	51	67	+	20.6	1.13e-07	0.00189	TTGGCCCCGCCCCCGTT
SP4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	48	64	-	20.6	1.13e-07	0.00189	TTGGCCCCGCCCCCGTT
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	22	+	19	1.13e-07	0.0003	TCCCCGCCCCTTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	14	28	-	19	1.13e-07	0.0003	TCCCCGCCCCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	20	34	-	19	1.13e-07	0.0003	GCCCCGCCCCCGGAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	20	34	-	19	1.13e-07	0.0003	GCCCCGCCCCCGGAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	30	44	-	19	1.13e-07	0.0003	TCCCCGCCTCCTCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	40	54	-	19	1.13e-07	0.0003	TCCCCGCCCCTTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	41	55	-	19	1.13e-07	0.0003	GCCCCGCCCTCCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	74	+	19	1.13e-07	0.0003	GCCCCGCCCTCCTCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	75	+	19	1.13e-07	0.0003	TCCCCGCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	67	81	-	19	1.13e-07	0.0003	GCCCCGCCCCTCCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	67	81	-	19	1.13e-07	0.0003	GCCCCGCCCCTCCGT
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	101	+	19	1.13e-07	0.0003	TCCCCGCCCCTTCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	5	15	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	5	15	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	11	21	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	11	21	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	17	27	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	17	27	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:122407077..122407191,+__2494.1.0.0	21	31	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	24	34	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	24	34	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	31	41	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	31	41	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	32	42	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	32	42	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	36	46	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	54	64	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	57	67	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	65	75	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	65	75	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	72	82	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	72	82	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	72	82	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	72	82	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	97	107	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	104	114	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	104	114	+	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	1	11	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	1	11	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	1	11	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	1	11	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	1	11	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	48	58	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	51	61	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	51	61	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	54	64	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	54	64	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	69	79	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	69	79	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	69	79	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	69	79	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	73	83	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	81	91	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr2:122407077..122407191,-__1173.1.0.0	84	94	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	88	98	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	100	110	-	19.2727	1.13e-07	0.00149	GCGCCTGCGCA
E2F6	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	26	36	-	17.4483	1.13e-07	0.0072	GGGCGGGAAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	26	36	-	17.3966	1.13e-07	0.0084	GGGCGGGAAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	26	+	19.1346	1.15e-07	0.000734	CCCCCGCCCCCGTC
IRF1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	63	83	-	19.871	1.16e-07	0.0124	GTTTGCTTCCACTTTCATTTC
NFYA	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	21	38	-	19.8049	1.16e-07	0.00432	CGGGCTCTGATTGGTCAG
NFYA	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	45	62	+	19.8049	1.16e-07	0.00432	CGGGCTCTGATTGGTCAG
NFYA	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	53	70	-	19.8049	1.16e-07	0.00432	CGGGCTCTGATTGGTCAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	46	63	+	12.0658	1.16e-07	0.00372	GGAGGGAAGGAGGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	52	69	-	12.0658	1.16e-07	0.00372	GGAGGGAAGGAGGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	10	30	-	19.5306	1.18e-07	0.000352	GGGGGAGGGGGAGGGGAGTAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	72	+	18.9828	1.18e-07	0.000312	GCCCCGCCCCCTGTG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	23	37	+	19.7857	1.2e-07	0.0204	AGAGGTCAGAGTTCA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	69	-	19.7857	1.2e-07	0.0204	AGAGGTCAGAGTTCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	4	18	-	18.9655	1.2e-07	0.000313	GCCCCGCCCCCTCAT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	4	18	-	18.9655	1.2e-07	0.000313	GCCCCGCCCCCTCAT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	52	66	-	18.9655	1.2e-07	0.000313	GCCCCGCCCCCTCAT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	52	66	-	18.9655	1.2e-07	0.000313	GCCCCGCCCCCTCAT
PLAG1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	23	36	-	20.3776	1.2e-07	0.0353	GGGGCCGTCGGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	79	92	+	20.3776	1.2e-07	0.0353	GGGGCCGTCGGGGG
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	29	43	-	19.6623	1.2e-07	0.058	AGTTAATTATTAACA
SRF	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	22	37	-	20.2623	1.22e-07	0.0275	TTCCCTTATATGGGCA
SRF	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	78	93	+	20.2623	1.22e-07	0.0275	TTCCCTTATATGGGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	7	27	-	19.4898	1.22e-07	0.000363	GGGGGAAGGGAAGGAGGTGGG
JUN	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	30	42	+	18.2449	1.22e-07	0.113	GGGATGATGTCAT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	14	27	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	14	27	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	14	27	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	14	27	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	19	32	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	24	37	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	24	37	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	24	37	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	24	37	-	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	59	+	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	59	+	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	42	55	-	19.0385	1.22e-07	0.000734	CTCCCGCCCCCGCT
EGR1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	73	+	19.0385	1.22e-07	0.000734	CTCCCGCCCCCGCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	84	+	19.0385	1.22e-07	0.000734	GCCCCGCCCCCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	86	97	+	19.0385	1.22e-07	0.00499	CAAGATGGCCGC
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	86	97	+	19.0385	1.22e-07	0.00499	CAAGATGGCCGC
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	86	97	+	19.0385	1.22e-07	0.00499	CAAGATGGCCGC
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	86	97	+	19.0385	1.22e-07	0.00499	CAAGATGGCCGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	60	77	-	11.9079	1.22e-07	0.00372	GGCAGGAAGGAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	60	77	-	11.9079	1.22e-07	0.00372	GGCAGGAAGGAGGGAAGG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	1	14	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	1	14	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	1	14	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	1	14	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	1	14	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	1	14	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	22	35	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	22	35	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	22	35	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	22	35	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	24	37	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	24	37	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	30	43	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	30	43	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	33	46	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	56	69	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	46	59	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	67	80	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	67	80	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	67	80	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	67	80	+	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	68	81	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	69	82	-	18.2727	1.24e-07	0.00232	GGGGGCGGGGCCTG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	59	72	-	19.0192	1.25e-07	0.00074	GCCCCACCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	59	72	-	19.0192	1.25e-07	0.00074	GCCCCACCCCCTCC
INSM1	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	52	63	+	18.9388	1.26e-07	0.086	TGCCAGGGGGCA
SP2	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	37	51	-	18.9138	1.26e-07	0.000328	GCCCCGCCTCTCTCC
SP2	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	78	+	18.9138	1.26e-07	0.000328	GCCCCGCCTCTCTCC
NFYA	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	9	26	+	19.7073	1.27e-07	0.00432	AGAGTGCCGATTGGCCAG
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	89	106	-	19.7073	1.27e-07	0.00432	AGAGTGCCGATTGGCCAG
SP4	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	27	43	-	20.3636	1.3e-07	0.00204	AAGGCCCCGCCCACTAT
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	30	50	+	19.4082	1.3e-07	0.000381	AGGGGTGGGGGGGAAGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	65	85	-	19.4082	1.3e-07	0.000381	AGGGGTGGGGGGGAAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	89	109	-	19.4082	1.3e-07	0.000381	GGGGGTGGGAGAGGGGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	89	109	-	19.4082	1.3e-07	0.000381	GGGGGTGGGAGAGGGGGAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	89	109	-	19.4082	1.3e-07	0.000381	GGGGGTGGGAGAGGGGGAAAA
SP2	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	9	23	-	18.8793	1.31e-07	0.000338	TCCCCGCCCCCTTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	75	91	-	20.3273	1.33e-07	0.00204	CTGGCCCCGCCCCTCTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	75	91	-	20.3273	1.33e-07	0.00204	CTGGCCCCGCCCCTCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	52	66	+	20.7241	1.33e-07	0.0155	CCCCGCCCCCGCACG
MEF2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	25	39	-	18.1864	1.33e-07	0.0606	GAGCTAAAAATAGAC
MEF2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	25	39	-	18.1864	1.33e-07	0.0606	GAGCTAAAAATAGAC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	53	66	-	18.2576	1.33e-07	0.00232	CGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	53	66	-	18.2576	1.33e-07	0.00232	CGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	53	66	-	18.2576	1.33e-07	0.00232	CGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	53	66	-	18.2576	1.33e-07	0.00232	CGGGGCGGGGCCTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	15	29	-	18.8621	1.34e-07	0.00034	GCCCCGCCCTCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	15	29	-	18.8621	1.34e-07	0.00034	GCCCCGCCCTCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	15	29	-	18.8621	1.34e-07	0.00034	GCCCCGCCCTCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	15	29	-	18.8621	1.34e-07	0.00034	GCCCCGCCCTCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	15	29	-	18.8621	1.34e-07	0.00034	GCCCCGCCCTCTTCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	40	60	-	19.3673	1.34e-07	0.000392	TGAGGAGGAGGACGGAGAAGG
SP8	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	64	75	-	18.1711	1.34e-07	0.00458	ACCACGCCCCCT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	1	21	-	19.3469	1.37e-07	0.000397	TGAGGTGGGCGAGGAGGGGGG
SP4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	30	46	-	20.2727	1.37e-07	0.00204	CCGGCCCCGCCCCCTCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	14	28	-	18.9636	1.37e-07	0.0361	CGCCCCCCGCGGCGC
USF1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	21	-	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	40	-	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	58	-	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	70	-	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	110	-	18.102	1.38e-07	0.00569	GCCACGTGACC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	65	75	+	17.6182	1.38e-07	0.0164	CCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	65	75	+	17.6182	1.38e-07	0.0164	CCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	65	75	+	17.6182	1.38e-07	0.0164	CCACTTCCGGC
Myog	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	45	+	16.1224	1.38e-07	0.0362	GACAGCTGCGG
Myog	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	70	80	-	16.1224	1.38e-07	0.0362	GACAGCTGCGG
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	2	12	-	18.303	1.38e-07	0.0137	GGCCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	2	12	-	18.303	1.38e-07	0.0137	GGCCACACCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	26	36	+	18.303	1.38e-07	0.0137	GGCCACACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	79	89	-	18.303	1.38e-07	0.0137	GGCCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	79	89	-	18.303	1.38e-07	0.0137	GGCCACACCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	103	113	+	18.303	1.38e-07	0.0137	GGCCACACCCA
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	15	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	15	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	22	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	28	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	40	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	40	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	45	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	55	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	55	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	58	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	58	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	58	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	58	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	58	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	59	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	59	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	60	+	18.102	1.38e-07	0.00569	GCCACGTGACC
USF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	85	+	18.102	1.38e-07	0.00569	GCCACGTGACC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	12	-	17.6182	1.38e-07	0.0164	CCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	12	-	17.6182	1.38e-07	0.0164	CCACTTCCGGC
ELK4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	50	-	17.6182	1.38e-07	0.0164	CCACTTCCGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	23	33	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	23	33	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	22	32	-	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	41	51	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	54	64	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	54	64	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	64	74	-	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	64	74	-	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	64	74	-	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	76	86	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	83	93	+	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	82	92	-	18.0164	1.38e-07	0.00845	CCGGAAGTGGC
SP4	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	27	43	+	20.2545	1.39e-07	0.00204	TAAGCCCCGCCCCTCTA
SP4	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	72	88	-	20.2545	1.39e-07	0.00204	TAAGCCCCGCCCCTCTA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	14	31	+	19.6098	1.39e-07	0.00432	CGCGCGCTGATTGGCCGC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	14	31	+	19.6098	1.39e-07	0.00432	CGCGCGCTGATTGGCCGC
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	14	31	+	19.6098	1.39e-07	0.00432	CGCGCGCTGATTGGCCGC
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	14	31	+	19.6098	1.39e-07	0.00432	CGCGCGCTGATTGGCCGC
ELF4	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	34	45	+	19.3115	1.4e-07	0.0233	GACCCGGAAGTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	30	43	+	18.2424	1.41e-07	0.00232	CCGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	30	43	+	18.2424	1.41e-07	0.00232	CCGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	30	43	+	18.2424	1.41e-07	0.00232	CCGGGCGGGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	72	85	-	18.2424	1.41e-07	0.00232	CCGGGCGGGGCCTG
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	85	98	+	19.2241	1.42e-07	0.0106	GTTGCCCTAGCAAC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	78	96	-	19.6721	1.42e-07	0.0135	CCGCCACTAGGTGGCAGGC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	78	96	-	19.6721	1.42e-07	0.0135	CCGCCACTAGGTGGCAGGC
NFYA	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	37	54	+	19.5854	1.43e-07	0.00432	CGCCTTCTGATTGGTCGC
NFYA	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	61	78	-	19.5854	1.43e-07	0.00432	CGCCTTCTGATTGGTCGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	27	45	+	18.7742	1.46e-07	0.0484	GGGCGCAGCGGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	27	45	+	18.7742	1.46e-07	0.0484	GGGCGCAGCGGGGCGGGGC
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	10	24	+	18.2115	1.46e-07	0.00889	CCCTGGGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	10	24	+	18.2115	1.46e-07	0.00889	CCCTGGGCCAATCAG
SP4	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	27	43	-	20.1636	1.46e-07	0.00208	GAGGCCCCGCCCCTTCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	6	20	-	18.7759	1.47e-07	0.000362	GCCCCGCCCCTGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	32	46	-	18.7759	1.47e-07	0.000362	GTCCCACCCCCCCCC
SP2	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	83	+	18.7759	1.47e-07	0.000362	GTCCCACCCCCCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	93	+	18.7759	1.47e-07	0.000362	GCCCCGCCCCTGCTC
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	45	65	+	19.2449	1.48e-07	0.000427	AGAGGAGAAAGAGGGAGGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	66	86	+	19.2449	1.48e-07	0.000427	AGAGGAAGAGGAGCAGAAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	50	70	-	19.2449	1.48e-07	0.000427	AGAGGAGAAAGAGGGAGGGAG
STAT1::STAT2	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	48	62	-	19.3333	1.49e-07	0.033	TCGGTTTCTTTTTCC
STAT1::STAT2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	48	62	-	19.3333	1.49e-07	0.033	TCGGTTTCTTTTTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	30	+	18.7586	1.5e-07	0.000362	GGCCCGCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	30	+	18.7586	1.5e-07	0.000362	GGCCCGCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	32	+	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	32	+	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
SP2	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	9	23	-	18.7586	1.5e-07	0.000362	GCCCCACCCCCGCCC
SP2	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	10	24	-	18.7586	1.5e-07	0.000362	GCCCCGCCCCTGACC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	39	+	18.7586	1.5e-07	0.000362	GGCCCGCCCCCGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	39	+	18.7586	1.5e-07	0.000362	GGCCCGCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	16	30	-	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	16	30	-	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
SP2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	99	+	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
SP2	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	105	+	18.7586	1.5e-07	0.000362	GCCCCGCCCCTGACC
SP2	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	83	97	-	18.7586	1.5e-07	0.000362	ACCCCGCCCCCTGCC
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	29	43	+	19.4545	1.5e-07	0.058	TGTTAATAATTAACT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	7	27	+	19.2245	1.51e-07	0.000431	AGAGGAGGGGAAAAGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	7	27	+	19.2245	1.51e-07	0.000431	AGAGGAGGGGAAAAGGAGGGG
CTCF	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	13	31	+	19.5902	1.51e-07	0.0135	GCGCCGCCAGGGGGCGCCC
NFYA	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	45	62	+	19.5244	1.51e-07	0.0044	TGGCCTCTGATTGGCCGA
TP53	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	-	19.5714	1.51e-07	0.0508	CACAAGCCCGGGCTTGTC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	29	44	+	19.2424	1.51e-07	0.016	GGTTGCCATAGTAACC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	29	44	+	19.2424	1.51e-07	0.016	GGTTGCCATAGTAACC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	29	44	+	19.2424	1.51e-07	0.016	GGTTGCCATAGTAACC
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	52	66	-	19.8197	1.51e-07	0.138	ATGACTCAGCAGTAG
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	35	48	+	18.8462	1.52e-07	0.000882	GCGCCGCCCCCGCG
EGR1	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	42	55	-	18.8462	1.52e-07	0.000882	GCGCCGCCCCCGCG
EGR1	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	60	73	+	18.8462	1.52e-07	0.000882	GCGCCGCCCCCGCG
Zfx	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	39	52	-	18.2121	1.53e-07	0.0024	GGCGGCGCGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	63	76	+	18.2121	1.53e-07	0.0024	GGCGGCGCGGCCTG
Hoxc9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	39	51	+	17.9524	1.53e-07	0.0356	GGCTATAAATCAC
Hoxc9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	39	51	+	17.9524	1.53e-07	0.0356	GGCTATAAATCAC
Hoxc9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	39	51	+	17.9524	1.53e-07	0.0356	GGCTATAAATCAC
Hoxc9	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	39	51	+	17.9524	1.53e-07	0.0356	GGCTATAAATCAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	44	64	+	19.2041	1.53e-07	0.000433	GAGGGAAGAAGAAAGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	89	109	-	19.2041	1.53e-07	0.000433	GGGGGTGGGAGAGGGGGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	89	109	-	19.2041	1.53e-07	0.000433	GGGGGTGGGAGAGGGGGGAAA
SP2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	26	+	18.7414	1.53e-07	0.000368	CCCCCGCCCCCCACC
HNF4G	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	1	15	+	18.3462	1.54e-07	0.127	AGGGAGCAAAGTCCA
RFX3	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	-	19.4545	1.55e-07	0.00754	GGTCACCATGGAAACG
RFX3	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	+	19.4545	1.55e-07	0.00754	GGTCACCATGGAAACG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	48	68	-	19.1837	1.56e-07	0.000439	GGAGGAGAAGGAGGAGGGCAA
SP2	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	46	+	18.7241	1.57e-07	0.000375	GCCCCGCCTCCTGGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	80	97	-	11.1711	1.57e-07	0.0046	GAAGGGAAGGAAGTAAGG
EBF1	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	20	33	+	19.459	1.57e-07	0.0643	AGTCCCTTGGGAAT
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	30	42	+	19.7727	1.58e-07	0.0875	GTTAATAATTAAC
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	20	31	+	19.2295	1.59e-07	0.0315	AACCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	20	31	+	19.2295	1.59e-07	0.0315	AACCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	20	31	+	19.2295	1.59e-07	0.0315	AACCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	20	31	+	19.2295	1.59e-07	0.0315	AACCCGGAAGTG
SP2	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	29	43	-	18.7069	1.59e-07	0.00038	TCCCCGCCCCCCGCG
SP4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	38	54	+	20.0182	1.6e-07	0.00208	CAGGCCCCGCCCCTCCC
SP4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	61	77	-	20.0182	1.6e-07	0.00208	CAGGCCCCGCCCCTCCC
RFX3	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	-	19.4242	1.6e-07	0.00754	GGTCGCCATGGTGACG
RFX3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	+	19.4242	1.6e-07	0.00754	GGTCGCCATGGTGACG
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	+	19.4242	1.6e-07	0.00754	GGTCGCCATGGTGACG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	+	19.5517	1.61e-07	0.0118	CGTTGCCCTAGCAACC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	59	79	-	19.1429	1.61e-07	0.000449	GAGGGAGGAAGGGAAGGGATG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	59	79	-	19.1429	1.61e-07	0.000449	GAGGGAGGAAGGGAAGGGATG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	61	81	-	19.1429	1.61e-07	0.000449	AGAAGAGGAGGGGGAGGGGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	19	35	-	20	1.62e-07	0.00208	CAGGCCCCGCCCCCCGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	19	35	-	20	1.62e-07	0.00208	CAGGCCCCGCCCCCCGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	19	35	-	20	1.62e-07	0.00208	CAGGCCCCGCCCCCCGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	19	35	-	20	1.62e-07	0.00208	CAGGCCCCGCCCCCCGA
SP2	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	20	+	18.6897	1.63e-07	0.000385	GCCCCGCCCTCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	22	+	18.6897	1.63e-07	0.000385	CCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	22	+	18.6897	1.63e-07	0.000385	CCCCCGCCCCTGCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	47	61	-	18.6897	1.63e-07	0.000385	GCCCCGCCCTCCGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	15	35	+	19.1224	1.64e-07	0.000452	GGAGGAGGGAGGGGCGGGGCC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	36	56	+	19.1224	1.64e-07	0.000452	GGGGAAGGGGAAGGGGAAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	59	79	-	19.1224	1.64e-07	0.000452	GGGGAAGGGGAAGGGGAAGGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	28	41	-	18.7692	1.65e-07	0.00093	GCCCCGCCTCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	38	51	-	18.7692	1.65e-07	0.00093	CCCCCGCCCCCGGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	74	+	18.7692	1.65e-07	0.00093	CCCCCGCCCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	74	+	18.7692	1.65e-07	0.00093	CCCCCGCCCCCGGA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	71	84	-	18.7692	1.65e-07	0.00093	GCCCCGCCTCCGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	-	16.6909	1.66e-07	0.0493	TGCCCTCGGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	9	29	+	19.102	1.66e-07	0.000455	GGAGGTGGGCGGAGGGAAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	26	46	+	19.102	1.66e-07	0.000455	GGAGGTGGGCGGAGGGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	69	89	-	19.102	1.66e-07	0.000455	GGAGGTGGGCGGAGGGAAGGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	17	31	+	18.6552	1.68e-07	0.000389	GTCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	28	42	-	18.6552	1.68e-07	0.000389	CCCCCGCCTCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	28	42	-	18.6552	1.68e-07	0.000389	CCCCCGCCTCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	72	+	18.6552	1.68e-07	0.000389	GCCCCGCCCCCGTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	72	+	18.6552	1.68e-07	0.000389	GCCCCGCCCCCGTTC
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	40	50	+	16.5102	1.68e-07	0.0532	GGGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	40	50	+	16.5102	1.68e-07	0.0532	GGGTGACTCAG
JUNB	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	32	42	-	16.5102	1.68e-07	0.0532	GGGTGACTCAG
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	69	80	-	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	69	80	-	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	69	80	-	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	69	80	-	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	90	101	+	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	90	101	+	18.9038	1.68e-07	0.00545	CAAGATGGCTGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	59	79	-	19.0816	1.69e-07	0.000459	GAGGCAGGAAGGAGGGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	59	79	-	19.0816	1.69e-07	0.000459	GAGGCAGGAAGGAGGGAAGGG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	14	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	14	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	14	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	14	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	15	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	15	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	15	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	15	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	17	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	20	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	22	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	23	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	29	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	29	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	29	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	29	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	32	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	36	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	38	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	40	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	41	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	41	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	41	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	41	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	42	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	43	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	45	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	45	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	45	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	54	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	54	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	54	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	56	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	56	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	57	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	57	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	57	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	57	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	57	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	58	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	58	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	58	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	59	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	61	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	61	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	61	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	61	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	62	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	64	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	65	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	66	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	66	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	68	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	68	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	68	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	68	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	69	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	73	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	74	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	75	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	77	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	78	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	81	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	82	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	84	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	87	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	97	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	106	+	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	14	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	15	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	15	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	28	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	28	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	28	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	40	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	28	38	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	28	38	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	28	38	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	38	48	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	42	52	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	65	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	65	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	50	60	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	54	64	-	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	77	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	92	+	18.1154	1.7e-07	0.00074	GCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	1	11	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	1	11	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	3	13	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	3	13	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	5	15	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	6	16	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	8	18	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	8	18	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	9	19	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	11	21	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	15	25	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	16	26	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	16	26	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	17	27	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	17	27	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	17	27	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	17	27	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	18	28	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	19	29	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	22	32	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	24	34	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	24	34	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	27	37	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	27	37	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	27	37	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	27	37	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	28	38	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	28	38	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	29	39	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	30	40	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	30	40	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	31	41	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	31	41	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	32	42	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	32	42	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	32	42	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	32	42	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	33	43	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	33	43	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	36	46	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	38	48	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	40	50	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	41	51	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	42	52	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	42	52	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	47	57	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	47	57	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	50	60	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	51	61	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	53	63	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	53	63	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	54	64	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	56	66	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	56	66	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	56	66	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	57	67	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	57	67	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	58	68	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	58	68	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	58	68	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	61	71	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	66	76	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	66	76	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	66	76	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	67	77	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	67	77	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	67	77	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	67	77	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	74	84	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	75	85	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	75	85	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	83	93	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	92	102	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	100	110	-	18.2414	1.7e-07	0.000641	GCCCCGCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	26	40	-	18.6379	1.71e-07	0.000389	GCCCCGCCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	26	40	-	18.6379	1.71e-07	0.000389	GCCCCGCCCCGGCCC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	65	77	+	19.6379	1.71e-07	0.0258	AAGCCGGAAGTAA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	65	77	+	19.6379	1.71e-07	0.0258	AAGCCGGAAGTAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	10	30	+	19.0612	1.72e-07	0.000462	GGAGGAAGGGGGAAGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	10	30	+	19.0612	1.72e-07	0.000462	GGAGGAAGGGGGAAGGGGGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	10	30	+	19.0612	1.72e-07	0.000462	GGAGGAAGGGGGAAGGGGGCG
Zfx	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	47	60	-	18.1515	1.72e-07	0.00257	GCGGCCTCGGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	83	96	+	18.1515	1.72e-07	0.00257	CTGGCCGCGGCCTG
SP8	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	33	+	18.1053	1.72e-07	0.00458	ACCACGCCCACT
SP8	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	33	44	-	18.1053	1.72e-07	0.00458	ACCACGCCCACT
SP8	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	82	+	18.1053	1.72e-07	0.00458	ACCACGCCCACT
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	59	79	+	19.0408	1.74e-07	0.000467	GAGGGCGGGAGAGAGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	36	56	-	19.0408	1.74e-07	0.000467	GAGGGCGGGAGAGAGGGAGGG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	28	42	-	18.7424	1.75e-07	0.00501	TTCTCGCGAGATTTA
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	28	42	-	18.7424	1.75e-07	0.00501	TTCTCGCGAGATTTA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	28	42	-	18.7424	1.75e-07	0.00501	TTCTCGCGAGATTTA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	56	70	-	18.7424	1.75e-07	0.00501	GTCTCGCGGGATCTC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	73	87	+	18.7424	1.75e-07	0.00501	TTCTCGCGAGATTTA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	27	41	-	18.6207	1.75e-07	0.000389	GCCCCGCCTCCGCAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	27	41	-	18.6207	1.75e-07	0.000389	GCCCCGCCTCCGCAC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	27	41	-	18.6207	1.75e-07	0.000389	GCCCCGCCTCCGCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	27	41	-	18.6207	1.75e-07	0.000389	GCCCCGCCTCCGCAC
SP2	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	88	+	18.6207	1.75e-07	0.000389	GCCCCGCCTCCGCAC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	95	+	18.6207	1.75e-07	0.000389	CCCCCGCCCCTCGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	95	+	18.6207	1.75e-07	0.000389	CCCCCGCCCCTCGCC
Zfx	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	59	72	+	18.0758	1.75e-07	0.00257	GGCGCCGGGGCCTC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	29	42	+	19.4138	1.76e-07	0.00377	GGCCACGCCCCCAA
SP4	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	89	105	-	19.8182	1.79e-07	0.00222	GTAGCCCCGCCCCCAAA
SP4	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	10	26	+	19.8182	1.79e-07	0.00222	GTAGCCCCGCCCCCAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	7	27	+	19	1.8e-07	0.00048	GGGGGAGAGAAGGGAGGAGGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	7	21	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	7	21	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	7	21	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	7	21	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	7	21	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	37	+	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	37	+	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	43	+	18.6034	1.81e-07	0.000389	GCCCCGCCTCTTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	43	+	18.6034	1.81e-07	0.000389	GCCCCGCCTCTTCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	30	44	-	18.6034	1.81e-07	0.000389	GCCCCGCCCCGCCCG
Klf12	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	31	45	-	19.8689	1.81e-07	0.0151	GACCACGCCCACTCT
Klf12	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	21	35	+	19.8689	1.81e-07	0.0151	GACCACGCCCACTCT
Klf12	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	70	84	+	19.8689	1.81e-07	0.0151	GACCACGCCCACTCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	34	51	-	9.81579	1.82e-07	0.00498	GGGAGGAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	34	51	-	9.81579	1.82e-07	0.00498	GGGAGGAGGGCAGGAGGC
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	-	19.2727	1.83e-07	0.00754	GGTCGCCATGGGAACG
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	-	19.2727	1.83e-07	0.00754	GGTCGCCATGGGAACG
RFX3	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	+	19.2727	1.83e-07	0.00754	GGTCGCCATGGGAACG
EGR1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	9	22	+	18.6731	1.83e-07	0.00096	CGCCCTCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	4	17	-	18.6731	1.83e-07	0.00096	GCTCCGCCCCCACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	9	22	-	18.6731	1.83e-07	0.00096	CCCCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	11	24	-	18.6731	1.83e-07	0.00096	CCCCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	24	37	-	18.6731	1.83e-07	0.00096	CCCCCGCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	93	106	-	18.6731	1.83e-07	0.00096	CGCCCTCCCCCGCC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	36	56	-	18.9796	1.83e-07	0.000487	GGGGGAGCGCGGGGGAGAGAA
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	30	43	-	18.8793	1.84e-07	0.0106	GGCGCCATAGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	30	43	-	18.8793	1.84e-07	0.0106	GGCGCCATAGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	30	43	-	18.8793	1.84e-07	0.0106	GGCGCCATAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	30	43	-	18.8793	1.84e-07	0.0106	GGCGCCATAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	30	43	-	18.8793	1.84e-07	0.0106	GGCGCCATAGCAAC
MTF1	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	37	50	-	19.4634	1.86e-07	0.0545	TTTGCACACTGCAC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	65	78	+	19.4634	1.86e-07	0.0545	TTTGCACACTGCAC
MTF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	65	78	+	19.4634	1.86e-07	0.0545	TTTGCACACTGCAC
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	34	45	+	19.1455	1.87e-07	0.0343	GACCCGGAAGTG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	+	16.6	1.87e-07	0.0493	TGCCCCCGGGCG
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	21	34	+	18.8276	1.87e-07	0.0106	GTTCCCATGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	21	34	+	18.8276	1.87e-07	0.0106	GTTCCCATGGCGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	31	44	+	18.8276	1.87e-07	0.0106	GTTCCCATGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	31	44	+	18.8276	1.87e-07	0.0106	GTTCCCATGGCGAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	81	94	-	18.8276	1.87e-07	0.0106	GTTCCCATGGCGAC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	68	81	-	18.6538	1.88e-07	0.000979	ACTCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	68	81	-	18.6538	1.88e-07	0.000979	ACTCCGCCCCCGCC
TP63	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	+	18.3621	1.89e-07	0.144	GACAAGTTGAGACTTGTT
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	2	22	+	18.9388	1.89e-07	0.000499	GGGGGTGGGGGGAAAAGGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	93	113	-	18.9388	1.89e-07	0.000499	GGGGGTGGGGGGAAAAGGGGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	26	+	18.569	1.9e-07	0.000389	GCCCCGCCTCCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	26	+	18.569	1.9e-07	0.000389	GCCCCGCCTCCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	26	+	18.569	1.9e-07	0.000389	GCCCCGCCTCCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	26	+	18.569	1.9e-07	0.000389	GCCCCGCCTCCCAGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	27	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	27	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	5	19	-	18.569	1.9e-07	0.000389	CTCCCGCCTCCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	33	+	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	14	28	-	18.569	1.9e-07	0.000389	GCCCCGCCCCTTGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	16	30	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	16	30	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	16	30	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	44	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	44	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	44	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	16	30	-	18.569	1.9e-07	0.000389	GCCCCACCCCCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	16	30	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	44	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	46	+	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	24	38	-	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	24	38	-	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	28	42	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	28	42	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	59	+	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	46	60	-	18.569	1.9e-07	0.000389	CTCCCGCCTCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	53	67	-	18.569	1.9e-07	0.000389	GCCCCGCCCCGCGCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	56	70	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	82	96	-	18.569	1.9e-07	0.000389	GCCCCGCCCCAGCCC
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	30	42	-	19.5152	1.92e-07	0.0875	GTTAATTATTAAC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	60	+	19.8315	1.95e-07	0.0346	CGCCCCCAGGGGGGC
Znf423	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	60	+	19.8315	1.95e-07	0.0346	CGCCCCCAGGGGGGC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	60	+	19.8315	1.95e-07	0.0346	CGCCCCCAGGGGGGC
Znf423	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	55	69	-	19.8315	1.95e-07	0.0346	CGCCCCCAGGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	37	57	-	18.898	1.95e-07	0.000512	GGAAGAGGGAGGAGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	37	57	-	18.898	1.95e-07	0.000512	GGAAGAGGGAGGAGGAGGAGG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	3	16	+	19.5106	1.96e-07	0.0672	GGCCCCCCGCAGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	3	16	+	19.5106	1.96e-07	0.0672	GGCCCCCCGCAGTG
RFX3	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	-	19.1818	1.98e-07	0.00754	CGTTTCCATGGTGACC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	-	19.1818	1.98e-07	0.00754	CGTCACCATGGCGACC
RFX3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	-	19.1818	1.98e-07	0.00754	CGTCACCATGGCGACC
RFX3	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	+	19.1818	1.98e-07	0.00754	CGTCACCATGGCGACC
RFX3	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	+	19.1818	1.98e-07	0.00754	CGTTTCCATGGTGACC
SP2	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	32	+	18.5172	2e-07	0.0004	CCCCCGCCTCCTCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	53	67	-	18.5172	2e-07	0.0004	ACCCCGCCCCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	53	67	-	18.5172	2e-07	0.0004	ACCCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	53	67	-	18.5172	2e-07	0.0004	ACCCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	53	67	-	18.5172	2e-07	0.0004	ACCCCGCCCCTCCCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	14	28	-	19.7869	2.01e-07	0.0151	GGCCACGCCCACACC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	45	59	+	19.7869	2.01e-07	0.0151	GGCCACGCCCACACC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	24	43	+	18.9908	2.03e-07	0.0165	CCCCACCCCCCCCCCCCCCC
EGR1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	58	71	-	18.5769	2.03e-07	0.001	GCCACGCCCCCGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	38	52	-	18.5	2.03e-07	0.0004	TCCCCGCCCCCACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	38	52	-	18.5	2.03e-07	0.0004	TCCCCGCCCCCACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	38	52	-	18.5	2.03e-07	0.0004	TCCCCGCCCCCACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	38	52	-	18.5	2.03e-07	0.0004	TCCCCGCCCCCACCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	38	52	-	18.5	2.03e-07	0.0004	TCCCCGCCCCCACCC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	+	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	+	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	+	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	+	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	+	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	-	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	-	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	-	17.1915	2.05e-07	0.0216	GGTGACTCATC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	-	17.1915	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	+	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	+	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	+	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	+	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	+	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	-	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	-	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	-	15.766	2.05e-07	0.0216	GGTGACTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	-	15.766	2.05e-07	0.0216	GGTGACTCATC
Spz1	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	41	51	-	17.4	2.05e-07	0.0466	AGGGTAACAGC
Spz1	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	43	53	-	17.4	2.05e-07	0.0466	AGGGTAACAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	64	74	+	17.4	2.05e-07	0.0466	AGGGTAACAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	64	74	+	17.4	2.05e-07	0.0466	AGGGTAACAGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	19	39	-	18.8367	2.05e-07	0.000536	GGAGGAGGCGGTGGCTGAGGG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	-	19.1364	2.06e-07	0.00754	CGTCGCCATGGGAACC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	-	19.1364	2.06e-07	0.00754	CGTCGCCATGGGAACC
NRF1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	26	36	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	31	41	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr2:122407144..122407258,-__2663.1.0.0	40	50	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	44	54	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	44	54	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	49	59	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	55	65	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	63	73	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	63	73	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	63	73	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	63	73	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	63	73	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	64	74	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	64	74	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	64	74	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	64	74	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	87	97	+	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	18	28	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	18	28	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	18	28	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	41	51	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	44	54	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	56	66	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr2:122407144..122407258,+__394.1.0.0	65	75	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	71	81	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	71	81	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	71	81	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	71	81	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	71	81	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	103	113	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	103	113	-	19.0545	2.07e-07	0.00159	GCGCCTGCGCG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	+	16.7347	2.08e-07	0.0857	TGCCCGAGGGCA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	36	56	+	18.8163	2.08e-07	0.000541	GAAGGAAGTGAAGGGGGAGGA
ZNF263	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	59	79	-	18.8163	2.08e-07	0.000541	GAAGGAAGTGAAGGGGGAGGA
SP2	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	9	23	-	18.4828	2.09e-07	0.0004	GTCCCGCCCTCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	24	38	-	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	24	38	-	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	66	+	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	49	63	-	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	49	63	-	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	91	+	18.4828	2.09e-07	0.0004	GCCCCGCCCCCAGCT
SP2	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	92	106	+	18.4828	2.09e-07	0.0004	GTCCCGCCCTCTCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	63	76	-	19.2931	2.11e-07	0.00438	CACCACGCCCCCTT
SP4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	28	44	-	19.5091	2.12e-07	0.00245	GCGGCCCCGCCCCCTCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	35	52	-	8.81579	2.12e-07	0.0056	GGGAGGGAGGGAGGCAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	44	+	18.4655	2.12e-07	0.0004	GCCCCGCCCCGTCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	44	+	18.4655	2.12e-07	0.0004	GCCCCGCCCCGTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	28	42	-	18.4655	2.12e-07	0.0004	GGCCCGCCTCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	28	42	-	18.4655	2.12e-07	0.0004	GGCCCGCCTCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	70	84	-	18.4655	2.12e-07	0.0004	GGCCCGCCTCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	70	84	-	18.4655	2.12e-07	0.0004	GGCCCGCCTCTTCCC
EGR1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	24	37	-	18.5577	2.13e-07	0.001	GCCCCACCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	39	+	18.5577	2.13e-07	0.001	CCTCCGCCCACTCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	91	+	18.5577	2.13e-07	0.001	GCCCCACCCCCACC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	87	106	-	18.8899	2.13e-07	0.0165	CAACACACCACCCGCCCAGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	87	106	-	18.8899	2.13e-07	0.0165	CAACACACCACCCGCCCAGC
BATF3	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	28	41	+	18.5303	2.14e-07	0.0315	TGCTGACGTCATCT
BATF3	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	26	39	-	18.5303	2.14e-07	0.0315	TGCTGACGTCATCT
BATF3	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	76	89	+	18.5303	2.14e-07	0.0315	TGCTGACGTCATCT
SP4	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	15	31	-	19.4909	2.14e-07	0.00245	AAAGCCCCGCCCCCCGC
SP4	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	47	63	-	19.4909	2.14e-07	0.00245	AAAGCCCCGCCCCCCGC
SP4	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	52	68	+	19.4909	2.14e-07	0.00245	AAAGCCCCGCCCCCCGC
SP4	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	84	100	+	19.4909	2.14e-07	0.00245	AAAGCCCCGCCCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	26	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	26	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	11	25	-	18.4483	2.15e-07	0.0004	GCCCCGCCTCCTCAG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	47	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	47	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	47	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	47	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	47	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	63	+	18.4483	2.15e-07	0.0004	GCCCCGCCTCTCGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	79	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	79	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	79	+	18.4483	2.15e-07	0.0004	GCCCCGCCCCGCCGC
SP2	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	104	+	18.4483	2.15e-07	0.0004	GCCCCGCCTCCTCAG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	+	19.069	2.15e-07	0.0123	GGGTGCCATGGCAACG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	+	19.069	2.15e-07	0.0123	GGGTGCCATGGCAACG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	+	19.069	2.15e-07	0.0123	GGGTGCCATGGCAACG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	68	82	-	19.7213	2.16e-07	0.0151	GGCCACGCCCCTCTC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	68	82	-	19.7213	2.16e-07	0.0151	GGCCACGCCCCTCTC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	68	82	-	19.7213	2.16e-07	0.0151	GGCCACGCCCCTCTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	68	82	-	19.7213	2.16e-07	0.0151	GGCCACGCCCCTCTC
Klf12	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	33	47	+	19.7213	2.16e-07	0.0151	GGCCACGCCCCTCTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	65	79	-	18.5303	2.16e-07	0.00501	GTCTCGCGAGAGCTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	65	79	-	18.5303	2.16e-07	0.00501	GTCTCGCGAGAGCTT
Klf12	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	5	19	+	19.7049	2.2e-07	0.0151	GGCCACGCCCACCCC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	23	35	+	19.449	2.21e-07	0.131	AGGGGATCCCCCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	15	28	-	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	15	28	-	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	15	28	-	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	18	+	18.5385	2.22e-07	0.001	GCCCCTCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	18	+	18.5385	2.22e-07	0.001	GCCCCTCCCCCGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	68	+	18.5385	2.22e-07	0.001	CCTCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	85	98	+	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	85	98	+	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	85	98	+	18.5385	2.22e-07	0.001	CCGCCGCCCACTCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	5	25	-	18.7347	2.22e-07	0.000573	GGAGGAGGAGTTGCGAGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	42	-	18.7347	2.22e-07	0.000573	GGGGGCGGGGGGGGGGGGGTG
SP4	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	3	19	+	19.4182	2.23e-07	0.00251	CCGGCCACGCCCACCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	45	58	+	19.1897	2.24e-07	0.0044	GGCCACGCCCACAC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	15	28	-	19.1897	2.24e-07	0.0044	GGCCACGCCCACAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	31	+	18.4138	2.25e-07	0.000415	GCCCCGCCCCTTGAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	31	+	18.4138	2.25e-07	0.000415	GCCCCGCCCCTTGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	31	+	18.4138	2.25e-07	0.000415	GCCCCGCCCCTTGAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	31	+	18.4138	2.25e-07	0.000415	GCCCCGCCCCTTGAC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	4	18	-	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	4	18	-	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	4	18	-	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	4	18	-	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	31	45	-	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	70	84	+	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	70	84	+	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	70	84	+	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZBTB33	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	97	111	+	18.5	2.25e-07	0.00501	TTCTCGCGAGAGTGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	49	69	+	18.7143	2.26e-07	0.000579	GAGGGAGGGGGAGGAGGTGAC
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	46	66	-	18.7143	2.26e-07	0.000579	GAGGGAGGGGGAGGAGGTGAC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	+	19.0303	2.26e-07	0.00754	GGTTCCCATGGCGACG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	+	19.0303	2.26e-07	0.00754	GGTTCCCATGGCGACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	27	40	-	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	27	40	-	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	27	40	-	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	27	40	-	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	54	67	-	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	17	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	17	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	17	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	17	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	41	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	61	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	77	+	18.5192	2.26e-07	0.001	GCCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	98	+	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	98	+	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	98	+	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	98	+	18.5192	2.26e-07	0.001	CCTCCACCCCCTCC
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	61	79	-	19.0328	2.28e-07	0.0161	AGCCCAGCAGGTGGCAGCA
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	89	107	-	19.0328	2.28e-07	0.0161	AGCCCAGCAGGTGGCAGCA
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	3	17	+	19.1857	2.28e-07	0.043	GGCCCCCCGCAGTGA
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	3	17	+	19.1857	2.28e-07	0.043	GGCCCCCCGCAGTGA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	28	39	-	16.5645	2.33e-07	0.06	GCGACCACCGAT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	28	39	-	16.5645	2.33e-07	0.06	GCGACCACCGAT
ZBTB7C	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	76	87	+	16.5645	2.33e-07	0.06	GCGACCACCGAT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	54	68	+	18.4697	2.34e-07	0.00501	CTCTCGCGAGACGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	54	68	+	18.4697	2.34e-07	0.00501	CTCTCGCGAGACGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	80	94	+	18.4697	2.34e-07	0.00501	CTCTCGCGAGACGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	80	94	+	18.4697	2.34e-07	0.00501	CTCTCGCGAGACGTC
RFX5	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	+	18.9483	2.34e-07	0.0123	CGTGGCCATGGCAACC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	56	73	-	8.46053	2.35e-07	0.00582	GGAAGGAGGGAAGGGGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	56	73	-	8.46053	2.35e-07	0.00582	GGAAGGAGGGAAGGGGTG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	+	18.7273	2.36e-07	0.016	GGTCGCCATGGTGACG
RFX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	+	18.7273	2.36e-07	0.016	GGTCGCCATGGTGACG
RFX4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	-	18.7273	2.36e-07	0.016	GGTCGCCATGGTGACG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	42	+	18.6697	2.36e-07	0.0165	ACCCCACCCCCCCCCCCCCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	69	89	-	18.6531	2.37e-07	0.000604	CGAGGAGGAGGAGGAGGGCGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	69	89	-	18.6531	2.37e-07	0.000604	CGAGGAGGAGGAGGAGGGCGA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	25	39	-	18.8182	2.37e-07	0.054	CACAATGACTCTGCA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	78	92	+	18.8182	2.37e-07	0.054	CACAATGACTCTGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	66	+	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	66	+	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	66	+	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	66	+	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	80	+	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	108	+	18.3621	2.38e-07	0.000427	GCCCCGCCCCTCTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	7	21	-	18.3621	2.38e-07	0.000427	GCCCCGCCCCTCTGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	7	21	-	18.3621	2.38e-07	0.000427	GCCCCGCCCCTCTGG
SP2	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	35	49	-	18.3621	2.38e-07	0.000427	TCCCCGCCCCTGCCC
RFX5	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	-	18.9138	2.38e-07	0.0123	GGTTGCCATGGCCACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	27	43	-	19.2909	2.39e-07	0.00258	CAGGCCCCGCCCCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	27	43	-	19.2909	2.39e-07	0.00258	CAGGCCCCGCCCCCGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	19	32	+	18.4615	2.41e-07	0.00105	TCTCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	27	40	-	18.4615	2.41e-07	0.00105	TCTCCGCCCCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	75	88	+	18.4615	2.41e-07	0.00105	TCTCCGCCCCCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	15	+	18.3448	2.43e-07	0.000427	GCCCCGCCCCTTGCA
SP2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	35	+	18.3448	2.43e-07	0.000427	GCCCCGCCTCCTGCA
SP2	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	14	28	-	18.3448	2.43e-07	0.000427	CTCCCGCCCCCGCCG
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	29	43	-	18.3448	2.43e-07	0.000427	GCCCCGCCCCCGGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	33	47	-	18.3448	2.43e-07	0.000427	GCCCCGCCCCTGGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	33	47	-	18.3448	2.43e-07	0.000427	GCCCCGCCCCTGGCT
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	63	+	18.3448	2.43e-07	0.000427	GCCCCGCCCCCGGTG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	63	+	18.3448	2.43e-07	0.000427	GCCCCGCCTCCTGCA
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	52	66	-	18.3448	2.43e-07	0.000427	GCCCCGCCCCCGGTG
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	86	+	18.3448	2.43e-07	0.000427	GCCCCGCCCCCGGTG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	99	+	18.3448	2.43e-07	0.000427	GCCCCGCCTCCTGCA
SP2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	80	94	-	18.3448	2.43e-07	0.000427	GCCCCGCCTCCTGCA
POU4F2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	2	17	+	19.0364	2.44e-07	0.0551	ATGAATAATTAATGTA
POU4F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	2	17	+	19.0364	2.44e-07	0.0551	ATGAATAATTAATGTA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	38	51	+	19.2551	2.46e-07	0.0353	GGGGCCTTAGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	38	51	+	19.2551	2.46e-07	0.0353	GGGGCCTTAGGGTG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	-	16.6727	2.46e-07	0.0852	TGCCCTCGGGCA
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	11	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	11	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	16	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	22	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	22	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	23	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	6	16	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	28	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	9	19	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	9	19	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	15	25	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	27	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	31	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	42	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	42	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	42	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	42	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	42	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	47	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	27	37	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	50	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	60	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	60	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	60	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	60	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	41	51	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	71	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	71	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	72	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	76	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	80	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	60	70	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	80	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	63	73	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	63	73	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	64	74	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	64	74	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	65	75	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	65	75	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	66	76	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	66	76	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	88	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	68	78	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	94	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	87	97	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	109	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	109	+	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	93	103	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	104	114	-	17.9038	2.46e-07	0.000848	CCCCCGCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	28	+	18.3276	2.46e-07	0.000427	CCCCCGCCCTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	53	+	18.3276	2.46e-07	0.000427	TCCCCGCCCCTCCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	64	+	18.3276	2.46e-07	0.000427	CCCCCGCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	64	+	18.3276	2.46e-07	0.000427	CCCCCGCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	57	71	-	18.3276	2.46e-07	0.000427	CCCCCGCCCTCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	57	71	-	18.3276	2.46e-07	0.000427	CCCCCGCCCTCCCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	62	76	-	18.3276	2.46e-07	0.000427	TCCCCGCCCCTCCCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	20	40	+	18.5918	2.48e-07	0.000626	GGGGGACGGCAGGAAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	43	63	-	18.5918	2.48e-07	0.000626	AAAGCAGGAAGAGGGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	43	63	-	18.5918	2.48e-07	0.000626	AAAGCAGGAAGAGGGAGGAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	75	95	-	18.5918	2.48e-07	0.000626	GGGGGACGGCAGGAAGGAGGG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	39	49	-	16.6735	2.49e-07	0.0592	CTTCTGGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	39	49	-	16.6735	2.49e-07	0.0592	CTTCTGGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	39	49	-	16.6735	2.49e-07	0.0592	CTTCTGGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	39	49	-	16.6735	2.49e-07	0.0592	CTTCTGGGAAA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	12	25	-	17.8182	2.5e-07	0.00328	CCCGCCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	12	25	-	17.8182	2.5e-07	0.00328	CCCGCCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	12	25	-	17.8182	2.5e-07	0.00328	CCCGCCCCGGCCTC
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	38	51	+	17.8182	2.5e-07	0.00328	CCCGCCCCGGCCTC
Zfx	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	64	77	-	17.8182	2.5e-07	0.00328	CCCGCCCCGGCCTC
TP53	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	+	18.7551	2.5e-07	0.0508	GACAAGCCCGGGCTTGTG
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	39	-	19.1429	2.51e-07	0.0524	GATGACGTCACG
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	87	+	19.1429	2.51e-07	0.0524	GATGACGTCACG
SP4	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	25	41	+	19.2	2.51e-07	0.00258	CAGGCCCCGCCCACCAG
SP4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	13	29	-	19.2	2.51e-07	0.00258	CAGGCCCCGCCCACCAG
SP4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	86	102	+	19.2	2.51e-07	0.00258	CAGGCCCCGCCCACCAG
SP4	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	74	90	-	19.2	2.51e-07	0.00258	CAGGCCCCGCCCACCAG
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	+	18.8939	2.51e-07	0.00754	CGTTCCCATGGCGACC
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	+	18.8939	2.51e-07	0.00754	CGTTCCCATGGCGACC
RFX3	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	-	18.8939	2.51e-07	0.00754	CGTTCCCATGGCGACC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	38	+	18.3103	2.51e-07	0.000432	GTCCCGCCCACCCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	65	+	18.3103	2.51e-07	0.000432	GTCCCGCCCACCCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	51	65	-	18.3103	2.51e-07	0.000432	GCCCCACCCCTCCCC
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	+	16.2909	2.52e-07	0.0286	CGCCTCAGGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	+	16.2909	2.52e-07	0.0286	CGCCTCAGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	-	16.2909	2.52e-07	0.0286	CGCCTCAGGCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	-	16.2909	2.52e-07	0.0286	CGCCTCAGGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	9	19	-	17.1034	2.52e-07	0.0084	GGGCGGGAAAG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	49	59	-	17.1034	2.52e-07	0.0084	GGGCGGGAAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	87	97	-	17.1034	2.52e-07	0.0084	GGGCGGGAAAG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	72	+	18.4231	2.52e-07	0.00109	CCCCCACCCCCGGC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	94	+	16.4286	2.53e-07	0.0498	AGCAGCTGCCCCT
Myod1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	94	+	16.4286	2.53e-07	0.0498	AGCAGCTGCCCCT
Myod1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	21	33	-	16.4286	2.53e-07	0.0498	AGCAGCTGCCCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	32	+	18.2931	2.54e-07	0.000435	GCCCCGCCCACGCCG
SP2	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	42	56	-	18.2931	2.54e-07	0.000435	GTCCCGCCCCTGGCG
SP2	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	73	+	18.2931	2.54e-07	0.000435	GTCCCGCCCCTGGCG
Rfx1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	69	82	-	18.5345	2.55e-07	0.0121	GTCGCCACGGCAAC
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	19	39	+	18.551	2.56e-07	0.000638	GGTGGAGGCGGAGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	89	109	+	18.551	2.56e-07	0.000638	TGTGGAGGAGGAAGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	89	109	+	18.551	2.56e-07	0.000638	TGTGGAGGAGGAAGGAGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	76	96	-	18.551	2.56e-07	0.000638	GGTGGAGGCGGAGGGGTGGGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	34	47	-	18.4038	2.57e-07	0.00111	CCTCCGCCCCCACA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	25	43	+	18.8525	2.59e-07	0.0161	TGTCCAGCAGGAGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	25	43	+	18.8525	2.59e-07	0.0161	TGTCCAGCAGGAGGCGCGG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	43	+	18.4771	2.6e-07	0.0165	CCCCCCCCCCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	68	79	-	17.6842	2.6e-07	0.00458	GACACGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	68	79	-	17.6842	2.6e-07	0.00458	GACACGCCCCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	68	79	-	17.6842	2.6e-07	0.00458	GACACGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	68	79	-	17.6842	2.6e-07	0.00458	GACACGCCCCCT
RFX2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	-	18.9857	2.6e-07	0.0116	CGTTTCCATGGTGACC
RFX2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	+	18.9857	2.6e-07	0.0116	CGTTTCCATGGTGACC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	33	47	-	18.2759	2.61e-07	0.000444	GCCCCGCCCTCTCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	72	+	18.2759	2.61e-07	0.000444	GCCCCGCCCCCTGTT
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	+	18.8485	2.62e-07	0.00754	GGGTGCCATGGCAACG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	+	18.8485	2.62e-07	0.00754	GGGTGCCATGGCAACG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	+	18.8485	2.62e-07	0.00754	GGGTGCCATGGCAACG
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	31	+	18.3846	2.63e-07	0.00112	CCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	44	+	18.3846	2.63e-07	0.00112	CCCCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	44	+	18.3846	2.63e-07	0.00112	CCCCCGCCTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	74	-	18.2586	2.63e-07	0.000446	CCCCCGCCCCCGGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	74	-	18.2586	2.63e-07	0.000446	CCCCCGCCCCCGGCG
IRF2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	6	23	-	19.4128	2.64e-07	0.078	TGAAAGCGAAAGTAAAGC
IRF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	18	35	-	19.4128	2.64e-07	0.078	TGAAAGCGAAAGTAAAGC
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	18	35	-	19.4128	2.64e-07	0.078	TGAAAGCGAAAGTAAAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	40	53	-	18.4828	2.66e-07	0.0121	GTCACCATGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	40	53	-	18.4828	2.66e-07	0.0121	GTCACCATGGCGAC
Rfx1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	62	75	+	18.4828	2.66e-07	0.0121	GTCACCATGGCGAC
SP2	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	8	22	-	18.2414	2.68e-07	0.000452	CCCCCGCCTCTCCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	4	24	+	18.4898	2.69e-07	0.000661	AGAGGCGGGGGAGGGGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	15	35	+	18.4898	2.69e-07	0.000661	GGAGGCGGAGGGGAGGAGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	15	35	+	18.4898	2.69e-07	0.000661	GGAGGCGGAGGGGAGGAGGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	33	53	+	18.4898	2.69e-07	0.000661	GGTGGAGGCGAGGCAGGAAGA
YY1	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	60	71	-	18.2308	2.71e-07	0.00848	CAAAATGGCTGC
BATF3	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	26	39	+	17.9545	2.73e-07	0.0315	AGATGACGTCAGCA
BATF3	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	28	41	-	17.9545	2.73e-07	0.0315	AGATGACGTCAGCA
BATF3	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	76	89	-	17.9545	2.73e-07	0.0315	AGATGACGTCAGCA
SP4	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	7	23	+	19.0364	2.74e-07	0.00258	CAGACCACGCCCCCGCC
SP4	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	92	108	-	19.0364	2.74e-07	0.00258	CAGACCACGCCCCCGCC
RFX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	-	18.5758	2.75e-07	0.016	CGTCACCATGGCGACC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	-	18.5758	2.75e-07	0.016	CGTCACCATGGCGACC
RFX4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	+	18.5758	2.75e-07	0.016	CGTCACCATGGCGACC
SP2	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	14	28	+	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
SP2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	32	+	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	41	55	+	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	41	55	+	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	41	55	+	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	41	55	+	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	30	44	-	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	30	44	-	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	30	44	-	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	30	44	-	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	67	+	18.2241	2.75e-07	0.000452	GCCCCGCCCTCGTCC
SP2	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	85	+	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	83	97	-	18.2241	2.75e-07	0.000452	GGCCCGCCCCCACGC
SP2	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	87	101	-	18.2241	2.75e-07	0.000452	CGCCCGCCCCCCCCG
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	14	24	+	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	14	24	+	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	12	22	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	12	22	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	26	36	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	26	36	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	30	40	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	30	40	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	30	40	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	30	40	-	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	49	59	+	17.8939	2.76e-07	0.0137	GGCCACACCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	49	59	+	17.8939	2.76e-07	0.0137	GGCCACACCCT
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	25	38	+	17.0577	2.76e-07	0.0605	AAGAAATGAGTCAT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	22	35	-	18.3462	2.77e-07	0.00116	ATCCCGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	22	35	-	18.3462	2.77e-07	0.00116	ATCCCGCCCCCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	28	39	-	17.9828	2.77e-07	0.0641	GCGACCACCGAT
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	28	39	-	17.9828	2.77e-07	0.0641	GCGACCACCGAT
ZBTB7B	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	76	87	+	17.9828	2.77e-07	0.0641	GCGACCACCGAT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	+	16.6545	2.77e-07	0.0852	TGCCCGAGGGCA
Zfx	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	18	31	+	17.7424	2.78e-07	0.00334	CCCGCCTCGGCCTC
Zfx	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	85	98	-	17.7424	2.78e-07	0.00334	CCCGCCTCGGCCTC
Zfx	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	85	98	-	17.7424	2.78e-07	0.00334	CCCGCCTCGGCCTC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	10	24	+	18.6515	2.79e-07	0.033	GTAGTTTCAGTTTCC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	24	38	-	18.6515	2.79e-07	0.033	GTAGTTTCAGTTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	19	+	18.2069	2.79e-07	0.000456	GCCCCTCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	19	+	18.2069	2.79e-07	0.000456	GCCCCTCCCCCGCGC
ZNF263	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	15	35	+	18.4286	2.82e-07	0.000685	GGGGGAGTGAGGGAGAGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	59	79	-	18.4286	2.82e-07	0.000685	GGGGGAGGGGAGAGCAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	59	79	-	18.4286	2.82e-07	0.000685	GGGGGAGGGGAGAGCAGGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	80	100	-	18.4286	2.82e-07	0.000685	GGGGGAGTGAGGGAGAGAAGA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	69	79	-	18.1552	2.83e-07	0.00105	GACACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	69	79	-	18.1552	2.83e-07	0.00105	GACACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	69	79	-	18.1552	2.83e-07	0.00105	GACACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	69	79	-	18.1552	2.83e-07	0.00105	GACACGCCCCC
RFX4	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	-	18.5455	2.83e-07	0.016	CGTTTCCATGGTGACC
RFX4	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	+	18.5455	2.83e-07	0.016	CGTTTCCATGGTGACC
SP2	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	24	38	-	18.1897	2.84e-07	0.000461	CGCCCGCCCCCCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	25	39	-	18.1897	2.84e-07	0.000461	GCCCCGCCCCCGGAG
SP2	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	77	91	+	18.1897	2.84e-07	0.000461	CGCCCGCCCCCCGCC
RFX3	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	+	18.7273	2.85e-07	0.0077	CGTTTCCATAGAAACG
RFX3	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	-	18.7273	2.85e-07	0.0077	CGTTTCCATAGAAACG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	25	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	25	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	25	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	25	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	30	41	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	34	45	-	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
SP8	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	80	+	17.6447	2.86e-07	0.00458	GCCACGCCCCCA
MEF2D	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	26	37	-	19.2182	2.87e-07	0.0806	GCTAAAAATAGA
MEF2D	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	26	37	-	19.2182	2.87e-07	0.0806	GCTAAAAATAGA
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	9	23	+	18.3091	2.87e-07	0.174	CAAAAGTGAAAGTAA
SP4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	28	44	+	18.9455	2.87e-07	0.00258	CAGGCCCCGCCCCTCCG
SP4	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	26	42	-	18.9455	2.87e-07	0.00258	CAGGCCCCGCCCCTCCG
SP4	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	73	89	+	18.9455	2.87e-07	0.00258	CAGGCCCCGCCCCTCCG
SP4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	71	87	-	18.9455	2.87e-07	0.00258	CAGGCCCCGCCCCTCCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	2	21	-	18.2661	2.87e-07	0.0165	CCCCCACCCATCCCACCCCC
EGR4	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	62	77	-	18.3273	2.88e-07	0.0258	CCCCGCCCCCGCACCT
EGR4	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	38	53	+	18.3273	2.88e-07	0.0258	CCCCGCCCCCGCACCT
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	30	43	+	18.3269	2.88e-07	0.00119	CCACCTCCCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	51	64	-	18.3269	2.88e-07	0.00119	CCTCCACCCACGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	58	71	-	18.3269	2.88e-07	0.00119	GCCCCACCCCCGCT
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	72	85	-	18.3269	2.88e-07	0.00119	CCACCTCCCCCGCC
TP53	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	36	53	+	18.5102	2.89e-07	0.0508	AACAAGCCCAGGCAAGCC
NFYA	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	24	41	-	18.7805	2.89e-07	0.0068	CGCTCGCTGATTGGCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	14	30	+	18.9273	2.9e-07	0.00258	CTGGCCCCGCCCCTTGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	14	30	+	18.9273	2.9e-07	0.00258	CTGGCCCCGCCCCTTGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	14	30	+	18.9273	2.9e-07	0.00258	CTGGCCCCGCCCCTTGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	14	30	+	18.9273	2.9e-07	0.00258	CTGGCCCCGCCCCTTGA
SP2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	23	+	18.1724	2.9e-07	0.000463	GGCCCGCCCCCTCTG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	1	15	-	18.1724	2.9e-07	0.000463	GGCCCGCCCCCTCTG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	1	15	-	18.1724	2.9e-07	0.000463	GGCCCGCCCCCTCTG
SP2	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	38	+	18.1724	2.9e-07	0.000463	TCCCCGCCCCTCCGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	47	61	+	18.1724	2.9e-07	0.000463	GGCCCGCCCCTCGCG
SP2	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	77	91	-	18.1724	2.9e-07	0.000463	TCCCCGCCCCTCCGC
SP2	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	114	+	18.1724	2.9e-07	0.000463	GGCCCGCCCCCTCTG
SP2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	92	106	-	18.1724	2.9e-07	0.000463	GGCCCGCCCCCTCTG
CTCF	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	16	34	+	18.6885	2.92e-07	0.0163	CGGCCTGCGGGGGGCGCTG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	10	24	-	17.8269	2.92e-07	0.0166	AAACGGACCAATCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	11	25	-	18.1552	2.95e-07	0.000463	ACCCCGCCCCCGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	11	25	-	18.1552	2.95e-07	0.000463	ACCCCGCCCCCGCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	24	38	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	24	38	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	24	38	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	57	71	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	57	71	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	57	71	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	57	71	-	18.1552	2.95e-07	0.000463	GCCCCGCCTTCCCGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	57	77	-	18.3673	2.95e-07	0.000697	GGAGGAGAGGAGAGGGGGGTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	44	57	-	17.6818	2.97e-07	0.00334	CCGGGCCGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	58	71	+	17.6818	2.97e-07	0.00334	CCGGGCCGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	58	71	+	17.6818	2.97e-07	0.00334	CCGGGCCGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	58	71	+	17.6818	2.97e-07	0.00334	CCGGGCCGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	58	71	+	17.6818	2.97e-07	0.00334	CCGGGCCGGGCCTG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	33	+	18.3077	2.97e-07	0.00119	TCCCCGCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	33	+	18.3077	2.97e-07	0.00119	TCCCCGCCCCCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	50	+	18.3077	2.97e-07	0.00119	TCCCCGCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	50	+	18.3077	2.97e-07	0.00119	TCCCCGCCCCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	50	63	+	18.3077	2.97e-07	0.00119	CCTCCTCCCCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	52	65	-	18.3077	2.97e-07	0.00119	CCTCCTCCCCCTCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	7	23	+	18.8727	2.98e-07	0.00258	CCGGCCCCGCCCCCCCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	33	49	-	18.8727	2.98e-07	0.00258	CCGGCCCCGCCCCCCCT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	18	31	+	17.0385	2.98e-07	0.0605	AGGGGGTGACTCAC
SP3	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	6	16	+	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	56	+	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	14	24	-	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	14	24	-	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	14	24	-	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	17	27	-	16.935	3e-07	0.00272	GCCACGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	63	73	-	16.935	3e-07	0.00272	GCCACGCCCAC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	29	49	+	18.3469	3e-07	0.000697	AAAGGAGGAGGAGGCAGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	29	49	+	18.3469	3e-07	0.000697	AAAGGAGGAGGAGGCAGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	29	49	+	18.3469	3e-07	0.000697	AAAGGAGGAGGAGGCAGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	29	49	+	18.3469	3e-07	0.000697	AAAGGAGGAGGAGGCAGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	30	50	+	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	30	50	+	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	30	50	+	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	30	50	+	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	35	55	+	18.3469	3e-07	0.000697	TGGGGAAGGGGAAGGGGAAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	60	80	-	18.3469	3e-07	0.000697	TGGGGAAGGGGAAGGGGAAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	66	86	-	18.3469	3e-07	0.000697	AAAGGAGGAGGAGGCAGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	75	95	-	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	75	95	-	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	75	95	-	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	75	95	-	18.3469	3e-07	0.000697	GGGGGTGGAGGGAGGGAAGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	46	+	18.1379	3e-07	0.000467	GTCCCGCCCCTGGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	46	+	18.1379	3e-07	0.000467	GTCCCGCCCCTGGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	46	+	18.1379	3e-07	0.000467	GTCCCGCCCCTGGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	70	84	-	18.1379	3e-07	0.000467	GTCCCGCCCCCAACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	70	84	-	18.1379	3e-07	0.000467	GTCCCGCCCCCAACC
Foxo1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	72	82	-	16.7931	3.04e-07	0.0961	TCCTGTTTACA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	1	11	+	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	1	11	+	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	21	31	+	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	81	91	+	16.5192	3.04e-07	0.036	GAAATGACTCA
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	36	46	+	13.6154	3.04e-07	0.0961	AATTTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	36	46	+	13.6154	3.04e-07	0.0961	AATTTGCTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	99	109	-	13.6154	3.04e-07	0.0961	AATTTGCTGAC
Foxo1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	33	43	+	16.7931	3.04e-07	0.0961	TCCTGTTTACA
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	62	72	+	16.7931	3.04e-07	0.0961	TCCTGTTTACA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	24	34	-	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	84	94	-	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	103	113	-	16.5192	3.04e-07	0.036	GAAATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	103	113	-	16.5192	3.04e-07	0.036	GAAATGACTCA
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	28	41	+	19.0714	3.04e-07	0.0669	TGATGACGTCACCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	14	31	+	7.78947	3.05e-07	0.00677	GGGAGGGAGGCAGGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	27	47	+	18.3265	3.05e-07	0.000697	GAAGGATGTGGGGAAGGGGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	93	113	+	18.3265	3.05e-07	0.000697	GGAAGAGGAGGAGGGAAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	2	22	-	18.3265	3.05e-07	0.000697	GGAAGAGGAGGAGGGAAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	2	22	-	18.3265	3.05e-07	0.000697	GGAAGAGGAGGAGGGAAGGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	68	88	-	18.3265	3.05e-07	0.000697	GAAGGATGTGGGGAAGGGGAA
SP4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	27	43	+	18.8182	3.06e-07	0.00258	CCGGCCACGCCCCCAAC
RFX5	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	-	18.4655	3.06e-07	0.0143	CATTGCCATGGTAACT
Zfx	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	19	32	+	17.6667	3.07e-07	0.00334	GGGGCTGCGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	83	96	-	17.6667	3.07e-07	0.00334	GGGGCTGCGGCCTG
RFX2	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	+	18.7286	3.09e-07	0.0116	CGTTTCTATGGAAACG
RFX2	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	-	18.7286	3.09e-07	0.0116	CGTTTCTATGGAAACG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	83	94	+	18.1923	3.09e-07	0.00853	CAACATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	83	94	+	18.1923	3.09e-07	0.00853	CAACATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	83	94	+	18.1923	3.09e-07	0.00853	CAACATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	83	94	+	18.1923	3.09e-07	0.00853	CAACATGGCGGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	70	85	-	18.3273	3.09e-07	0.0628	CAGGGCAAAGTCCACA
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	70	85	-	18.3273	3.09e-07	0.0628	CAGGGCAAAGTCCACA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	18	38	+	18.3061	3.1e-07	0.000697	GGGGGCGGGAGGGGGAAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	26	46	+	18.3061	3.1e-07	0.000697	AGAGAAGGAGGAAGAAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	26	46	+	18.3061	3.1e-07	0.000697	AGAGAAGGAGGAAGAAGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	43	63	+	18.3061	3.1e-07	0.000697	GAGGGCGGGAGGGCGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	52	72	-	18.3061	3.1e-07	0.000697	GAGGGCGGGAGGGCGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	82	102	-	18.3061	3.1e-07	0.000697	GGATGAAGAGGAGGTGGAGAA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.1.0	27	41	+	18.1299	3.1e-07	0.058	GGTAAATCATTAACT
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.0.0	27	41	+	18.1299	3.1e-07	0.058	GGTAAATCATTAACT
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	17	30	+	18.5571	3.11e-07	0.123	CTGACACGTCATCC
CREB3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	17	30	+	18.5571	3.11e-07	0.123	CTGACACGTCATCC
NFYA	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	8	25	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	12	29	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	12	29	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	12	29	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	12	29	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	46	63	-	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	86	103	+	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
NFYA	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	90	107	+	18.6951	3.11e-07	0.0068	ATCCTGCTGATTGGTAGA
SP4	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	29	45	+	18.7818	3.12e-07	0.00258	CAGGCCACGCCTCCTCC
SP4	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	70	86	-	18.7818	3.12e-07	0.00258	CAGGCCACGCCTCCTCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	56	73	-	7.73684	3.12e-07	0.00677	GAAGGAAAGGCAGGAGGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	46	60	-	18.0862	3.13e-07	0.000485	GCCCCGCCCCTGGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	46	60	-	18.0862	3.13e-07	0.000485	GCCCCGCCCCTGGGG
RFX3	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	+	18.6061	3.14e-07	0.00799	CGTTTCTATGGAAACG
RFX3	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	-	18.6061	3.14e-07	0.00799	CGTTTCTATGGAAACG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	4	24	+	18.2857	3.15e-07	0.000703	GGAGGAGCAGGGAGAAGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	19	39	-	18.2857	3.15e-07	0.000703	GGAGGGGGAGGAGAGGGGAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	69	89	-	18.2857	3.15e-07	0.000703	GGAGGAGCAGGGAGAAGGCGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	80	93	-	18.25	3.15e-07	0.00125	CCGCCGCCTCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	95	108	+	18.25	3.15e-07	0.00125	CCGCCGCCTCCGCC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	9	22	-	17.6515	3.15e-07	0.00338	GGGGCCGGGGCCTA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	23	35	-	18.5306	3.16e-07	0.131	CGGGGGATCCCCT
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	27	39	+	17.3621	3.16e-07	0.232	TTGATTTGCATAT
EGR3	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	58	72	-	19.431	3.17e-07	0.0155	CCACGCCCACGCGCG
RFX2	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	+	18.6571	3.18e-07	0.0116	CGTTTCCATAGAAACG
RFX2	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	-	18.6571	3.18e-07	0.0116	CGTTTCCATAGAAACG
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	44	+	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	70	+	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	4	18	-	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	16	30	-	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	16	30	-	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	45	59	-	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	61	75	-	18.069	3.19e-07	0.000486	GCCCCGCCCCTTTTC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	71	85	-	18.069	3.19e-07	0.000486	GCCCCGCCCCGCTCC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	55	75	-	18.2653	3.19e-07	0.00071	CGGGGAGGGGAAGGGAGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	55	75	-	18.2653	3.19e-07	0.00071	CGGGGAGGGGAAGGGAGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	8	18	-	17.0862	3.2e-07	0.0072	GGGCGGGAAGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	8	18	-	17.0862	3.2e-07	0.0072	GGGCGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	8	18	-	17.0862	3.2e-07	0.0072	GGGCGGGAAGC
E2F6	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	12	22	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	27	37	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	27	37	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	32	42	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	43	53	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	46	56	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	51	61	-	17.0862	3.2e-07	0.0072	GGGCGGGAAGC
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	52	62	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	58	68	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	60	70	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	90	100	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	91	101	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	96	106	-	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	3	13	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	4	14	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	4	14	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	4	14	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	4	14	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	6	16	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	6	16	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	6	16	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	9	19	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	14	24	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	15	25	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	15	25	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	20	30	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	45	55	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	47	57	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	53	63	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	59	69	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	73	83	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	93	103	+	17.0862	3.2e-07	0.0072	GGGCGGGAGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	62	76	+	18.5857	3.2e-07	0.0338	GGGGGTCGAAGGGCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	62	76	+	18.5857	3.2e-07	0.0338	GGGGGTCGAAGGGCA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	71	-	18.0714	3.22e-07	0.086	TGGCAGGGGGCG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	94	108	-	19	3.22e-07	0.0491	ACACTGACTCAGCAG
EGR1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	71	84	-	18.2308	3.23e-07	0.00125	TCTCCACCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	44	+	18.2308	3.23e-07	0.00125	GCCCCGCCCCCGTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	44	+	18.2308	3.23e-07	0.00125	GCCCCGCCCCCGTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	44	+	18.2308	3.23e-07	0.00125	GCCCCGCCCCCGTC
EGR1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	31	44	+	18.2308	3.23e-07	0.00125	TCTCCACCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	44	+	18.2308	3.23e-07	0.00125	GCCCCGCCCCCGTC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	-	16.5102	3.24e-07	0.0857	TGCCCTCGGGCA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	36	54	+	18.541	3.24e-07	0.0163	CCGCCCGCAGGGGGCGCCC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	36	54	+	18.541	3.24e-07	0.0163	CCGCCCGCAGGGGGCGCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	56	76	+	18.2449	3.25e-07	0.000719	AGGGGAAGGGGAGGTGGGAGA
SP2	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	44	+	18.0517	3.25e-07	0.00049	GCCCCGCCCCTCTAC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	57	71	+	18.0517	3.25e-07	0.00049	CGCCCGCCCCCTGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	57	71	+	18.0517	3.25e-07	0.00049	CGCCCGCCCCCTGCC
SP2	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	44	58	-	18.0517	3.25e-07	0.00049	CGCCCGCCCCCTGCC
SP2	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	71	85	-	18.0517	3.25e-07	0.00049	GCCCCGCCCCTCTAC
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	46	62	+	18.6909	3.27e-07	0.00258	CAGGCCCCGCCCCCGGT
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	30	46	-	18.6909	3.27e-07	0.00258	CAGGCCCCGCCCCCGGT
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	53	69	-	18.6909	3.27e-07	0.00258	CAGGCCCCGCCCCCGGT
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	69	85	+	18.6909	3.27e-07	0.00258	CAGGCCCCGCCCCCGGT
SRF	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	4	19	+	18.5738	3.27e-07	0.0517	ATCCCATATATGGACT
RFX2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	+	18.6	3.28e-07	0.0116	GGTCACCATGGAAACG
RFX2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	-	18.6	3.28e-07	0.0116	GGTCACCATGGAAACG
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	10	23	-	18.2115	3.28e-07	0.00126	GGCCCGCCCCCTCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	18	37	+	17.9725	3.29e-07	0.0165	CACCACACCACCCCCAGTGA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	29	43	+	17.766	3.3e-07	0.227	TGGGATGATGTCATG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	10	23	-	18.8276	3.3e-07	0.00612	GGACACGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	10	23	-	18.8276	3.3e-07	0.00612	GGACACGCCCCTCT
RFX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	+	18.5857	3.31e-07	0.0116	GGTCGCCATGGTGACG
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	+	18.5857	3.31e-07	0.0116	GGTCGCCATGGTGACG
RFX2	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	-	18.5857	3.31e-07	0.0116	GGTCGCCATGGTGACG
TBP	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	48	62	+	15.1389	3.32e-07	0.0247	CTATAAAAGCGCAGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	66	80	+	18.5286	3.35e-07	0.0338	CGGGGTGAAGGGTCA
KLF13	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	32	49	+	18.5	3.35e-07	0.0241	TGGCCACGCCCCTCTCGC
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	66	83	-	18.5	3.35e-07	0.0241	TGGCCACGCCCCTCTCGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	66	83	-	18.5	3.35e-07	0.0241	TGGCCACGCCCCTCTCGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	66	83	-	18.5	3.35e-07	0.0241	TGGCCACGCCCCTCTCGC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	66	83	-	18.5	3.35e-07	0.0241	TGGCCACGCCCCTCTCGC
SP2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	44	+	18.0172	3.36e-07	0.000502	GCCCCGCCTCCTGGT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	69	+	18.0172	3.36e-07	0.000502	GCCCCTCCCCCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	69	+	18.0172	3.36e-07	0.000502	GCCCCTCCCCCCCTC
SP2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	46	60	-	18.0172	3.36e-07	0.000502	GCCCCTCCCCCCCTC
SP2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	71	85	-	18.0172	3.36e-07	0.000502	GCCCCGCCTCCTGGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	21	37	+	18.6364	3.37e-07	0.00258	TTAGCCACGCCTACTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	21	37	+	18.6364	3.37e-07	0.00258	TTAGCCACGCCTACTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	21	37	+	18.6364	3.37e-07	0.00258	TTAGCCACGCCTACTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	21	37	+	18.6364	3.37e-07	0.00258	TTAGCCACGCCTACTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	54	+	18.1731	3.38e-07	0.00127	CTCCCGCCCCCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	54	+	18.1731	3.38e-07	0.00127	CTCCCGCCCCCTCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	8	18	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	10	20	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	11	21	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	11	21	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	14	24	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	14	24	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	14	24	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	16	26	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	17	27	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	18	28	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	24	34	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	28	38	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	28	38	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	29	39	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	30	40	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	30	40	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	37	47	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	48	58	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	50	60	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	50	60	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	50	60	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	50	60	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	52	62	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	54	64	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	55	65	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	55	65	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	55	65	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	55	65	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	64	74	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	64	74	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	65	75	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	71	81	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	71	81	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	72	82	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	74	84	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	74	84	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	75	85	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	78	88	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	78	88	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	101	111	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	101	111	-	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	6	15	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	13	22	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	6	15	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	19	28	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	19	28	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	13	22	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	27	36	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	27	36	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	19	28	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	19	28	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	27	36	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	27	36	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	41	50	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	45	54	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	41	50	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	45	54	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	61	70	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	61	70	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	61	70	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	63	72	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	68	77	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	61	70	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	61	70	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	61	70	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	63	72	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	68	77	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	79	88	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	87	96	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	87	96	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	87	96	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	87	96	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	88	97	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	79	88	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	93	102	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	87	96	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	87	96	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	87	96	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	87	96	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	88	97	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	100	109	+	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	93	102	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	100	109	-	11.3548	3.39e-07	0.00594	GGCGCGCGCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	10	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	10	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	10	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	12	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	12	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	13	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	14	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	14	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	14	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	14	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	16	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	17	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	17	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	1	10	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	19	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	1	10	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	1	10	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	1	10	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	2	11	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	2	11	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	21	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	21	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	21	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	22	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	4	13	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	22	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	4	13	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	22	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	22	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	22	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	6	15	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	6	15	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	6	15	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	7	16	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	7	16	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	26	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	26	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	26	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	26	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	9	18	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	9	18	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	9	18	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	9	18	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	27	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	10	19	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	10	19	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	10	19	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	10	19	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	10	19	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	28	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	11	20	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	11	20	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	11	20	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	12	21	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	31	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	31	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	32	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	14	23	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	32	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	15	24	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	15	24	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	15	24	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	34	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	16	25	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	35	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	17	26	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	18	27	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	37	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	37	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	37	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	19	28	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	37	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	20	29	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	21	30	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	39	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	40	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	40	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	40	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	40	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	22	31	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	40	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	41	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	41	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	23	32	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	41	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	41	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	24	33	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	42	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	25	34	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	25	34	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	25	34	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	26	35	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	26	35	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	44	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	27	36	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	27	36	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	45	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	28	37	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	28	37	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	28	37	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	28	37	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	29	38	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	30	39	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	30	39	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	30	39	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	31	40	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	32	41	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	50	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	32	41	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	32	41	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	50	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	33	42	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	34	43	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	52	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	34	43	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	34	43	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	35	44	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	53	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	53	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	53	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	36	45	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	54	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	36	45	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	54	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	36	45	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	55	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	37	46	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	55	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	56	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	56	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	56	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	56	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	56	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	38	47	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	39	48	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	57	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	57	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	57	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	39	48	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	58	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	58	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	40	49	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	58	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	58	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	41	50	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	42	51	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	60	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	61	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	43	52	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	63	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	46	55	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	46	55	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	64	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	65	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	48	57	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	66	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	48	57	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	67	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	67	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	49	58	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	67	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	67	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	68	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	50	59	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	51	60	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	51	60	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	51	60	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	51	60	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	51	60	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	52	61	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	70	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	71	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	71	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	71	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	53	62	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	71	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	54	63	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	72	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	54	63	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	55	64	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	55	64	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	73	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	56	65	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	56	65	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	56	65	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	56	65	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	74	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	57	66	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	57	66	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	75	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	57	66	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	58	67	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	58	67	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	76	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	58	67	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	77	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	77	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	59	68	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	79	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	79	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	79	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	61	70	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	61	70	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	62	71	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	80	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	63	72	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	81	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	81	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	82	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	65	74	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	65	74	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	83	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	66	75	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	67	76	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	67	76	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	85	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	85	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	67	76	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	68	77	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	86	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	68	77	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	86	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	68	77	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	68	77	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	88	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	70	79	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	71	80	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	72	81	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	73	82	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	74	83	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	75	84	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	75	84	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	75	84	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	76	85	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	78	87	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	96	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	79	88	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	97	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	79	88	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	98	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	98	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	81	90	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	100	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	84	93	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	103	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	103	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	86	95	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	105	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	87	96	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	88	97	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	88	97	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	108	+	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	93	102	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	101	110	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	102	111	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	102	111	-	17	3.39e-07	0.000632	GCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	102	111	-	17	3.39e-07	0.000632	GCCCCGCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	11	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	14	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	27	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	27	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	27	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	27	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	40	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	40	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	41	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	43	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	43	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	43	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	51	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	51	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	59	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	61	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	61	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	67	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	71	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	72	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	72	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	72	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	72	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	78	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	86	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	87	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	89	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	98	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	99	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	101	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	104	+	17.8077	3.39e-07	0.00087	GCCCCGCCCCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	68	84	+	18.6182	3.4e-07	0.00258	CAGGCCCCGCCCCCGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	21	41	+	18.1837	3.4e-07	0.000746	GGAGGAGCAGGCGGTGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	51	71	-	18.1837	3.4e-07	0.000746	GAGGGAGGGGAGAGGAGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	51	71	-	18.1837	3.4e-07	0.000746	GAGGGAGGGGAGAGGAGGAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	55	75	-	18.1837	3.4e-07	0.000746	GGAGCCGGGGGTGGGGGAAGG
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	79	92	-	18.2069	3.4e-07	0.014	GTCACCATGGAAAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	17	30	+	18.2069	3.4e-07	0.014	GTCACCATGGAAAC
SP2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	48	+	18	3.4e-07	0.000503	CTCCCGCCCCCCCTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	24	38	-	18	3.4e-07	0.000503	GCCCCTCCCCCTGGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	24	38	-	18	3.4e-07	0.000503	GCCCCTCCCCCTGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	24	38	-	18	3.4e-07	0.000503	GCCCCTCCCCCTGGC
SP2	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	50	64	-	18	3.4e-07	0.000503	GCCCCTCCCCCCACC
SP2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	67	81	-	18	3.4e-07	0.000503	CTCCCGCCCCCCCTC
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	+	18.2931	3.42e-07	0.0143	CGTTCCCATGGCGACC
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	+	18.2931	3.42e-07	0.0143	CGTTCCCATGGCGACC
RFX5	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	-	18.2931	3.42e-07	0.0143	CGTTCCCATGGCGACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	55	71	+	18.6	3.43e-07	0.00258	CCGGCCCCGCCCCCTGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	55	71	+	18.6	3.43e-07	0.00258	CCGGCCCCGCCCCCTGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	30	43	-	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	30	43	-	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	61	74	-	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	54	+	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	54	+	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	85	+	18.1538	3.44e-07	0.00127	CCCCCTCCCCCTCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	21	31	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	21	31	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	25	35	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	25	35	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.1.0	17	27	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.0.0	17	27	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	20	30	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	30	40	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	20	30	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	23	33	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	23	33	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	24	34	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	24	34	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	26	36	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	28	38	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	44	54	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	44	54	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	46	56	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	45	55	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	47	57	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	58	68	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	58	68	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	60	70	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	60	70	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	54	64	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	54	64	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	54	64	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	59	69	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	59	69	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	61	71	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	61	71	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	77	87	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	85	95	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	75	85	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	86	96	+	18.6909	3.45e-07	0.00168	GCGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	84	94	-	18.6909	3.45e-07	0.00168	GCGCATGCGCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	8	28	-	18.1633	3.45e-07	0.000755	GAGGGAGGGAAAGAATGAAGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	24	+	17.9828	3.47e-07	0.000504	GCTCCGCCCCCTGGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	24	+	17.9828	3.47e-07	0.000504	GCTCCGCCCCCTGGC
SP2	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	66	+	17.9828	3.47e-07	0.000504	CCCCCGCCCCTTTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	6	20	-	17.9828	3.47e-07	0.000504	GCTCCGCCCCCTGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	48	62	-	17.9828	3.47e-07	0.000504	CCCCCGCCTCCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	48	62	-	17.9828	3.47e-07	0.000504	CCCCCGCCTCCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	48	62	-	17.9828	3.47e-07	0.000504	CCCCCGCCTCCTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	48	62	-	17.9828	3.47e-07	0.000504	CCCCCGCCTCCTTCC
SP2	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	49	63	-	17.9828	3.47e-07	0.000504	CCCCCGCCCCTTTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	27	+	18.1346	3.48e-07	0.00127	TCCCCTCCCCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	38	+	18.1346	3.48e-07	0.00127	TCCCCTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	110	+	18.1346	3.48e-07	0.00127	TCCCCTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	110	+	18.1346	3.48e-07	0.00127	TCCCCTCCCCCTCC
HSF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	39	51	+	19.4754	3.5e-07	0.163	TTCCAGAATGTTC
HSF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	39	51	+	19.4754	3.5e-07	0.163	TTCCAGAATGTTC
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	95	109	-	18.3485	3.51e-07	0.0641	CACACTGACTCAGCA
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	7	24	-	18.4138	3.51e-07	0.0241	GGGACACGCCCCTCTGCT
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	7	24	-	18.4138	3.51e-07	0.0241	GGGACACGCCCCTCTGCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	62	76	-	17.9655	3.54e-07	0.000513	GCCCCGCCCCCGGGA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	62	76	-	17.9655	3.54e-07	0.000513	GCCCCGCCCCCGGGA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	13	24	-	17.5789	3.55e-07	0.00458	GCCACGCCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	13	24	-	17.5789	3.55e-07	0.00458	GCCACGCCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	13	24	-	17.5789	3.55e-07	0.00458	GCCACGCCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	16	27	-	17.5789	3.55e-07	0.00458	GCCACGCCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	57	+	17.5789	3.55e-07	0.00458	GCCACGCCCACA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	7	27	-	17.2653	3.56e-07	0.0892	GGCAGCACCGTGGAGAGAAAA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	7	27	-	17.2653	3.56e-07	0.0892	GGCAGCACCGTGGAGAGAAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	13	33	-	18.1224	3.56e-07	0.000775	AATGGAGGGGGAAGGGAAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	24	44	-	18.1224	3.56e-07	0.000775	CGAGGAGGAGCAGGAGGGGGC
Nr1h3::Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	43	61	-	17.7097	3.59e-07	0.314	TGACCTATTGTTACCCCAG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	26	42	-	18.5091	3.59e-07	0.00258	TTTGCCCCGCCCACATC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	26	42	-	18.5091	3.59e-07	0.00258	TTTGCCCCGCCCACATC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	68	+	17.9483	3.6e-07	0.000517	GTCCCGCCCCTCGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	68	+	17.9483	3.6e-07	0.000517	GTCCCGCCCCTCGTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	107	+	17.9483	3.6e-07	0.000517	GTCCCGCCCCTCGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	107	+	17.9483	3.6e-07	0.000517	GTCCCGCCCCTCGTC
SP4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	31	47	-	18.4909	3.62e-07	0.00258	TCAGCCCCGCCCACCCT
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	-	18.4143	3.64e-07	0.0116	CGTCACCATGGCGACC
RFX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	-	18.4143	3.64e-07	0.0116	CGTCACCATGGCGACC
RFX2	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	+	18.4143	3.64e-07	0.0116	CGTCACCATGGCGACC
ATF7	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	29	42	+	18.9143	3.65e-07	0.0669	TAATGACGTCATAG
ATF7	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	73	86	-	18.9143	3.65e-07	0.0669	TAATGACGTCATAG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	60	70	-	18.8103	3.65e-07	0.0586	ACGCCCACGCG
CTCF	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	18	36	+	18.3607	3.67e-07	0.0171	ATTCCACCAGAGGGCAGCC
RFX4	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	+	18.2576	3.67e-07	0.0184	GGTCACCATGGAAACG
RFX4	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	-	18.2576	3.67e-07	0.0184	GGTCACCATGGAAACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	64	80	-	18.4545	3.68e-07	0.00258	CAGGCCCCGCCCCCGAA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	64	80	-	18.4545	3.68e-07	0.00258	CAGGCCCCGCCCCCGAA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	64	80	-	18.4545	3.68e-07	0.00258	CAGGCCCCGCCCCCGAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	64	80	-	18.4545	3.68e-07	0.00258	CAGGCCCCGCCCCCGAA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	80	+	17.7156	3.7e-07	0.0165	GCCCCACCCACCCCCCTCCA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	80	+	17.7156	3.7e-07	0.0165	GCCCCACCCACCCCCCTCCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	65	84	-	17.7156	3.7e-07	0.0165	GCCCCACCCACCCCCCTCCA
KLF14	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	68	81	+	18.6552	3.71e-07	0.00642	GGCCACGCCCCCAG
KLF14	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	33	46	-	18.6552	3.71e-07	0.00642	GGCCACGCCCCCAG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	66	83	+	18.3103	3.72e-07	0.0241	ATGCCACGCCCCTCATAC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	66	83	+	18.3103	3.72e-07	0.0241	ATGCCACGCCCCTCATAC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	64	81	-	18.3103	3.72e-07	0.0241	AGGACACGCCCCCTCGCG
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	64	81	-	18.3103	3.72e-07	0.0241	AGGACACGCCCCCTCGCG
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	64	81	-	18.3103	3.72e-07	0.0241	AGGACACGCCCCCTCGCG
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	64	81	-	18.3103	3.72e-07	0.0241	AGGACACGCCCCCTCGCG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	24	41	+	7.35526	3.72e-07	0.00677	GGAGAGGAGGCAGGAAGA
SPDEF	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	36	46	+	18.1818	3.73e-07	0.14	ACCCGGATGTG
FOSL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	40	50	+	16.7455	3.73e-07	0.0476	GGGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	40	50	+	16.7455	3.73e-07	0.0476	GGGTGACTCAG
FOSL2	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	53	63	+	16.7455	3.73e-07	0.0476	GGATGACTCAG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	21	31	+	15.6727	3.73e-07	0.0706	ACCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	21	31	+	15.6727	3.73e-07	0.0706	ACCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	21	31	+	15.6727	3.73e-07	0.0706	ACCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	21	31	+	15.6727	3.73e-07	0.0706	ACCCGGAAGTG
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	35	45	+	15.6727	3.73e-07	0.0706	ACCCGGAAGTG
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	27	37	-	16.7455	3.73e-07	0.0476	GGATGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	27	37	-	16.7455	3.73e-07	0.0476	GGATGACTCAG
FOSL2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	32	42	-	16.7455	3.73e-07	0.0476	GGGTGACTCAG
FOSL2	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	52	62	-	16.7455	3.73e-07	0.0476	GGATGACTCAG
SPDEF	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	79	-	18.1818	3.73e-07	0.14	ACCCGGATGTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	100	+	15.9592	3.73e-07	0.0832	AACAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	100	+	15.9592	3.73e-07	0.0832	AACAGCTGCAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	9	29	+	18.0612	3.73e-07	0.000795	GGAGGTGGGCGGAGGGAAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	74	94	+	18.0612	3.73e-07	0.000795	GGAGGCGGGGCTGGAGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	69	89	-	18.0612	3.73e-07	0.000795	GGAGGTGGGCGGAGGGAAAGG
SP2	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	61	+	17.9138	3.73e-07	0.000532	GCCCCGCCCCCAGAC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	73	87	+	17.9138	3.73e-07	0.000532	GTCCCGCCTCTGCCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	73	87	+	17.9138	3.73e-07	0.000532	GTCCCGCCTCTGCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	28	42	-	17.9138	3.73e-07	0.000532	GTCCCGCCTCTGCCG
SP2	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	54	68	-	17.9138	3.73e-07	0.000532	GCCCCGCCCCCAGAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	64	81	-	7.34211	3.74e-07	0.00677	GGAAGTAAGAAAGGCAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	64	81	-	7.34211	3.74e-07	0.00677	GGAAGTAAGAAAGGCAAG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	28	-	18.4681	3.74e-07	0.0778	CGCCCCCCGCGGCG
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	26	38	+	18.2951	3.74e-07	0.0697	GGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	26	38	+	18.2951	3.74e-07	0.0697	GGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	26	38	+	18.2951	3.74e-07	0.0697	GGCTGATGCAATC
ATF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	26	38	+	18.2951	3.74e-07	0.0697	GGCTGATGCAATC
TP73	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	-	18.5769	3.75e-07	0.0822	AACAAGTCTCAACTTGTC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.1.0	28	40	+	18.1364	3.76e-07	0.0875	GTAAATCATTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.0.0	28	40	+	18.1364	3.76e-07	0.0875	GTAAATCATTAAC
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	4	24	+	18.0408	3.79e-07	0.000795	GAGGGAGGGAAGGAGAAAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	12	32	+	18.0408	3.79e-07	0.000795	GGAGGATGGGGGTGAGGGCGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	33	53	+	18.0408	3.79e-07	0.000795	TGGGGAGGAGGGGGCGGGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	37	57	+	18.0408	3.79e-07	0.000795	GGAGGAGGCGGGAGGAGGCGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	71	91	+	18.0408	3.79e-07	0.000795	GAGGGAGGGAAGGAGAAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	8	28	-	18.0408	3.79e-07	0.000795	GGGGGAGGGGCGGCTAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	8	28	-	18.0408	3.79e-07	0.000795	GGGGGAGGGGCGGCTAGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	24	44	-	18.0408	3.79e-07	0.000795	GAGGGAGGGAAGGAGAAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	62	82	-	18.0408	3.79e-07	0.000795	TGGGGAGGAGGGGGCGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	62	82	-	18.0408	3.79e-07	0.000795	TGGGGAGGAGGGGGCGGGGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	91	111	-	18.0408	3.79e-07	0.000795	GAGGGAGGGAAGGAGAAAGGA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	36	+	17.8966	3.8e-07	0.000533	GCCCCGCCCCGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	51	65	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCTCGTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	51	65	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCTCGTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	51	65	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCTCGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	51	65	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCTCGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	63	77	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCCGAAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	63	77	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCCGAAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	63	77	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCCGAAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	63	77	-	17.8966	3.8e-07	0.000533	GCCCCGCCCCCGAAC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	21	40	+	17.6514	3.81e-07	0.0165	CCCCACCCCAGCCACACCCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	29	48	-	17.6514	3.81e-07	0.0165	CCCCACCCCAGCCACACCCA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.1.0	27	41	-	17.7532	3.81e-07	0.058	AGTTAATGATTTACC
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.0.0	27	41	-	17.7532	3.81e-07	0.058	AGTTAATGATTTACC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	46	63	-	7.28947	3.82e-07	0.00677	GAAAAGGAGGAAGGCGGG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	18	37	-	17.6422	3.82e-07	0.0165	CCCACCCCCACCCCCACCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	24	43	-	17.6422	3.82e-07	0.0165	CCCACCCCCACCCCCACCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	30	49	-	17.6422	3.82e-07	0.0165	CCCACCCCCACCCCCACCCC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	3	17	-	19.1798	3.83e-07	0.0346	CCACCCCAGGGGTGC
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	3	17	-	19.1798	3.83e-07	0.0346	CCACCCCAGGGGTGC
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	26	40	+	19.1798	3.83e-07	0.0346	CCACCCCAGGGGTGC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	26	40	+	19.1798	3.83e-07	0.0346	CCACCCCAGGGGTGC
IRF1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	70	90	+	18.4516	3.83e-07	0.0334	GCCTCCTTTCACTTTCCCTAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	10	27	-	7.27632	3.84e-07	0.00677	GGAGGGAGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	14	31	-	7.27632	3.84e-07	0.00677	GGAGGGAGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	16	33	-	7.27632	3.84e-07	0.00677	GGGAGGAGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	18	35	-	7.27632	3.84e-07	0.00677	GGAGGGAGGGAGGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	82	99	+	7.27632	3.84e-07	0.00677	GGGAGGAGGGAGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	88	108	-	18.0204	3.85e-07	0.000805	GATGGAGGATGAAGAGGAGGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	5	21	-	18.3636	3.85e-07	0.00258	TGGGCCCCGCCCCCTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	5	21	-	18.3636	3.85e-07	0.00258	TGGGCCCCGCCCCCTCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	53	69	-	18.3636	3.85e-07	0.00258	TGGGCCCCGCCCCCTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	53	69	-	18.3636	3.85e-07	0.00258	TGGGCCCCGCCCCCTCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	67	78	+	16.2258	3.86e-07	0.06	GCGACCACCGTA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	67	78	+	16.2258	3.86e-07	0.06	GCGACCACCGTA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	38	48	+	16.8276	3.9e-07	0.0084	GGGCGGGAAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	38	48	+	16.8276	3.9e-07	0.0084	GGGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	38	48	+	16.8276	3.9e-07	0.0084	GGGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	38	48	+	16.8276	3.9e-07	0.0084	GGGCGGGAAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	94	104	+	16.8276	3.9e-07	0.0084	GGGCGGGAAGA
HSF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	39	51	+	18.7455	3.9e-07	0.181	TTCCAGAATGTTC
HSF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	39	51	+	18.7455	3.9e-07	0.181	TTCCAGAATGTTC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	71	91	+	18	3.91e-07	0.000814	AGGGGAGGCGGGGCTGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	8	28	-	18	3.91e-07	0.000814	GGGGGAGGGGCGGCTAGGGGA
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	93	111	-	18.2623	3.93e-07	0.0171	AGGACACCAGAGGGCAGCG
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	+	18.2714	3.94e-07	0.0116	GGTTCCCATGGCGACG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	+	18.2714	3.94e-07	0.0116	GGTTCCCATGGCGACG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	25	38	-	17.4848	3.96e-07	0.0038	CCCGCCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	25	38	-	17.4848	3.96e-07	0.0038	CCCGCCCGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	25	38	-	17.4848	3.96e-07	0.0038	CCCGCCCGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	77	90	+	17.4848	3.96e-07	0.0038	CCCGCCCGGGCCTC
KLF16	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	20	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	24	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	36	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	36	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	36	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	36	+	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	65	75	-	17.7241	3.96e-07	0.00141	ACCACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	95	105	-	17.7241	3.96e-07	0.00141	ACCACGCCCCC
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	-	18.2571	3.98e-07	0.0116	GGTCGCCATGGGAACG
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	-	18.2571	3.98e-07	0.0116	GGTCGCCATGGGAACG
RFX2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	+	18.2571	3.98e-07	0.0116	GGTCGCCATGGGAACG
EGR1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	21	34	-	18.0192	3.99e-07	0.00143	CCCTCGCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	92	105	-	18.0192	3.99e-07	0.00143	CCCTCGCCCCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	10	23	+	18.0192	3.99e-07	0.00143	CCCTCGCCCCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	81	94	+	18.0192	3.99e-07	0.00143	CCCTCGCCCCCGCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	34	50	-	18.2909	4e-07	0.00258	TCAGCCCCGCCCCTTCC
HSF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	39	51	+	17.5854	4.01e-07	0.181	TTCCAGAATGTTC
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	39	51	+	17.5854	4.01e-07	0.181	TTCCAGAATGTTC
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	57	68	-	17.6923	4.01e-07	0.0092	CAAGATGGCGGA
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	57	68	-	17.6923	4.01e-07	0.0092	CAAGATGGCGGA
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.1.0	91	102	-	17.6923	4.01e-07	0.0092	CAAGATGGCGGA
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.0.0	91	102	-	17.6923	4.01e-07	0.0092	CAAGATGGCGGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	33	+	17.8448	4.05e-07	0.000563	GTCCCGCCCCCCACA
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	33	47	-	17.8448	4.05e-07	0.000563	GTCCCGCCCCGCCCG
SP4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	11	27	-	18.2545	4.08e-07	0.00258	CTGGCCACGCCCCTCGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	37	57	+	17.9388	4.09e-07	0.00085	AGTGGAGAGTGAGGAGGAGGG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	+	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	+	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	+	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	+	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	+	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	-	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	-	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	-	16.9091	4.1e-07	0.0322	GGTGACTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	-	16.9091	4.1e-07	0.0322	GGTGACTCATC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	1	18	+	18.3537	4.11e-07	0.0085	CGGGCGCTGATTGGTTGT
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	1	18	+	18.3537	4.11e-07	0.0085	CGGGCGCTGATTGGTTGT
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	35	47	-	16.7683	4.11e-07	0.188	GAGGTGTGAAATT
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	35	47	-	16.7683	4.11e-07	0.188	GAGGTGTGAAATT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	44	+	17.4862	4.11e-07	0.0165	CCCCCCCCCCCCCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	19	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	19	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	19	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	19	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	33	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCGGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	20	34	+	17.8276	4.11e-07	0.000563	GGCCCGCCTCTGCCC
SP2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	51	+	17.8276	4.11e-07	0.000563	CCCCCGCCCCCGCAC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	96	+	17.8276	4.11e-07	0.000563	GCCCCTCCCCCGTCC
SP2	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	110	+	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	5	19	-	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	64	78	-	17.8276	4.11e-07	0.000563	CCCCCGCCCCCGCAC
SP2	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	96	110	-	17.8276	4.11e-07	0.000563	GCCCCGCCCCCGACA
SP4	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	15	31	+	18.2364	4.11e-07	0.00258	GTGGCCCCGCCCACAAG
Hes1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	-	12.4056	4.13e-07	0.0659	GGCACGCGCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	8	17	-	18.1468	4.13e-07	0.00876	CCCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	26	35	-	18.1468	4.13e-07	0.00876	CCCCCCCCAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	10	19	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	10	19	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	10	19	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	14	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	17	26	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	19	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	23	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	23	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	27	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	27	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	30	39	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	30	39	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	31	40	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	31	40	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	35	44	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	35	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	35	44	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	35	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	35	44	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	37	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	42	51	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	42	51	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	44	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	44	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	44	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	44	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	50	59	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	50	59	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	50	59	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	50	59	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	55	64	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	78	87	+	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	80	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	80	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	84	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	98	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	105	-	16.6939	4.13e-07	0.00384	TGGGCGGGGC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	19	+	18.1468	4.13e-07	0.00876	CCCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	19	+	18.1468	4.13e-07	0.00876	CCCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	72	81	+	18.1468	4.13e-07	0.00876	CCCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	72	81	+	18.1468	4.13e-07	0.00876	CCCCCCCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	98	107	+	18.1468	4.13e-07	0.00876	CCCCCCCCAC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	85	98	-	17.9808	4.14e-07	0.00146	GGCCCACCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	30	+	17.9808	4.14e-07	0.00146	GGCCCACCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	30	+	17.9808	4.14e-07	0.00146	GGCCCACCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	30	+	17.9808	4.14e-07	0.00146	GGCCCACCCCCGCC
RFX4	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	-	18.1061	4.14e-07	0.0197	CATTGCCATGGTAACT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	3	13	+	17.3443	4.14e-07	0.00845	CCGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	3	13	+	17.3443	4.14e-07	0.00845	CCGGAAGTGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	14	24	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	14	24	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	14	24	-	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	44	54	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	64	74	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	64	74	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	64	74	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	64	74	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	64	74	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	67	77	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	67	77	+	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	61	71	-	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	61	71	-	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
Gabpa	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	91	101	-	17.3443	4.14e-07	0.00845	CCGGAAGTGCC
JUN	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	19	31	-	17.449	4.14e-07	0.193	AGGATGAGGTCAT
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	+	18.1857	4.14e-07	0.0116	CGTTCCCATGGCGACC
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	+	18.1857	4.14e-07	0.0116	CGTTCCCATGGCGACC
RFX2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	-	18.1857	4.14e-07	0.0116	CGTTCCCATGGCGACC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	3	20	-	18.1034	4.15e-07	0.0241	TAAGCACGCCCCCTTTGG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	3	20	-	18.1034	4.15e-07	0.0241	TAAGCACGCCCCCTTTGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	21	41	+	17.9184	4.15e-07	0.000861	GGGTGAGGGCGGGGTGGGAGG
KLF14	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	59	72	-	18.5345	4.17e-07	0.00642	GGCCACGCCCCCGC
REST	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	92	112	+	16.9592	4.17e-07	0.0892	CTCAGCTCCCAGGAGAGCTGC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	50	64	+	15.0417	4.18e-07	0.0247	GTATAAAAAGGGCCC
E2F8	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	33	44	+	18.5488	4.2e-07	0.179	ATTCCCGCCAAA
E2F8	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	71	82	-	18.5488	4.2e-07	0.179	ATTCCCGCCAAA
ELK4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	57	67	+	16.9273	4.2e-07	0.0164	CCGCTTCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	58	68	+	16.9273	4.2e-07	0.0164	CCGCTTCCGGC
ELK4	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	60	70	+	16.9273	4.2e-07	0.0164	CCGCTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	57	-	16.9273	4.2e-07	0.0164	CCGCTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	58	-	16.9273	4.2e-07	0.0164	CCGCTTCCGGC
SP2	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	18	+	17.8103	4.21e-07	0.000568	GCCCCGCCCCTGCAG
SP2	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	103	+	17.8103	4.21e-07	0.000568	GCCCCGCCCCTGCAG
SP2	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	12	26	-	17.8103	4.21e-07	0.000568	GCCCCGCCCCTGCAG
SP2	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	54	68	-	17.8103	4.21e-07	0.000568	GTCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	58	72	-	17.8103	4.21e-07	0.000568	GTCCCGCCCCAGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	58	72	-	17.8103	4.21e-07	0.000568	GTCCCGCCCCAGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	97	111	-	17.8103	4.21e-07	0.000568	GCCCCGCCCCTGCAG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	97	111	-	17.8103	4.21e-07	0.000568	GCCCCGCCCCTGCAG
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	-	18.1714	4.21e-07	0.0116	CGTCGCCATGGGAACC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	-	18.1714	4.21e-07	0.0116	CGTCGCCATGGGAACC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	66	82	-	18.1818	4.22e-07	0.00258	AAGGACACGCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	66	82	-	18.1818	4.22e-07	0.00258	AAGGACACGCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	66	82	-	18.1818	4.22e-07	0.00258	AAGGACACGCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	66	82	-	18.1818	4.22e-07	0.00258	AAGGACACGCCCCCTCG
RFX2	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	-	18.1571	4.25e-07	0.0116	GGTTGCCATGGCCACG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	48	66	+	18.1475	4.25e-07	0.0171	GGTCCAATAGGGGGCGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	48	66	+	18.1475	4.25e-07	0.0171	GGTCCAATAGGGGGCGCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	15	31	-	18.1636	4.25e-07	0.00258	ATAGCCCCGCCCCCCGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	15	31	-	18.1636	4.25e-07	0.00258	ATAGCCCCGCCCCCCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	15	31	-	18.1636	4.25e-07	0.00258	ATAGCCCCGCCCCCCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	15	31	-	18.1636	4.25e-07	0.00258	ATAGCCCCGCCCCCCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	15	31	-	18.1636	4.25e-07	0.00258	ATAGCCCCGCCCCCCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	25	45	-	17.8776	4.28e-07	0.000885	GGTGGAGGAGGAGGCGGTGGC
SRF	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	4	19	-	18.082	4.29e-07	0.0517	AGTCCATATATGGGAT
Zfx	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	29	42	+	17.4242	4.29e-07	0.0038	GCCGCCTGGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	53	66	-	17.4242	4.29e-07	0.0038	GGGGGCGGGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	73	86	-	17.4242	4.29e-07	0.0038	GCCGCCTGGGCCTC
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	26	38	+	18.1571	4.29e-07	0.363	CTTCCAGATGTTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	40	+	17.7931	4.3e-07	0.000576	GCCCCGCCCACCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	40	+	17.7931	4.3e-07	0.000576	GCCCCGCCCACCCAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	16	30	-	17.7931	4.3e-07	0.000576	GCCCCGCCCCGGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	16	30	-	17.7931	4.3e-07	0.000576	GCCCCGCCCCGGGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	25	39	-	18.6897	4.32e-07	0.0155	CCCCGCCCCCGCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	25	39	-	18.6897	4.32e-07	0.0155	CCCCGCCCCCGCGCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	1	11	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	1	11	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	13	23	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	33	43	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	42	52	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	42	52	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	42	52	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	42	52	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	42	52	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	44	54	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	71	81	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	73	83	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	99	109	-	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	16	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	19	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	20	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	30	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	30	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	35	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	38	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	38	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	42	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	42	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	42	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	42	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	42	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	43	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	43	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	43	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	43	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	43	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	44	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	44	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	46	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	46	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	47	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	47	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	49	+	17.6346	4.32e-07	0.000989	TCCCCGCCCCC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	25	39	-	17.8939	4.33e-07	0.00826	CTCTCGCGTGATCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	25	39	-	17.8939	4.33e-07	0.00826	CTCTCGCGTGATCTC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	25	39	-	17.8939	4.33e-07	0.00826	CTCTCGCGTGATCTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	76	90	+	17.8939	4.33e-07	0.00826	CTCTCGCGTGATCTC
TBP	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	50	64	+	15.0278	4.33e-07	0.0247	CTATAAAAACCGCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	14	30	-	18.1273	4.33e-07	0.00258	TGGGCCACGCCCACACC
SP4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	43	59	+	18.1273	4.33e-07	0.00258	TGGGCCACGCCCACACC
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	-	17.8163	4.33e-07	0.0508	AGCATGCCGGGACTTGTA
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	-	17.8163	4.33e-07	0.0508	AGCATGCCGGGACTTGTA
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	27	47	+	17.8571	4.35e-07	0.000894	TGGGGAGCCGGGGGAGGGAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	68	88	-	17.8571	4.35e-07	0.000894	TGGGGAGCCGGGGGAGGGAGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	42	+	17.7759	4.37e-07	0.000581	TCCCCGCCCCCGGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	42	+	17.7759	4.37e-07	0.000581	TCCCCGCCCCCGGGC
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	42	55	-	18.2755	4.37e-07	0.0353	GGGGCTCTAAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	42	55	-	18.2755	4.37e-07	0.0353	GGGGCTCTAAGGGG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	+	17.8621	4.41e-07	0.016	GGTTCCCATGGCGACG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	+	17.8621	4.41e-07	0.016	GGTTCCCATGGCGACG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	92	112	+	17.8367	4.42e-07	0.000904	GGAGGAGGAAGGAGGAGGTCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	92	112	+	17.8367	4.42e-07	0.000904	GGAGGAGGAAGGAGGAGGTCA
Zfx	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	54	67	+	17.4091	4.42e-07	0.0038	GCGGGCGGGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	48	61	-	17.4091	4.42e-07	0.0038	GCGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	71	84	+	17.4091	4.42e-07	0.0038	CGGGGCGGGGCCTC
RXRG	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	68	-	17.2128	4.43e-07	0.0881	GAGGTCAGAGTTCA
RXRG	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	24	37	+	17.2128	4.43e-07	0.0881	GAGGTCAGAGTTCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	30	40	+	17.5909	4.44e-07	0.0173	AGCCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	23	33	-	17.5909	4.44e-07	0.0173	AGCCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	23	33	-	17.5909	4.44e-07	0.0173	AGCCACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	29	39	-	17.5909	4.44e-07	0.0173	AGCCACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	75	85	+	17.5909	4.44e-07	0.0173	AGCCACACCCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	59	76	+	6.97368	4.45e-07	0.00677	GGGAGGAGGCAGGGAAGG
RFX5	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	+	17.8448	4.45e-07	0.016	AGTTACCATGGCAATG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	19	38	-	17.3028	4.46e-07	0.0165	CCCCACCCCCACCCCCACCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	25	44	-	17.3028	4.46e-07	0.0165	CCCCACCCCCACCCCCACCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	31	50	-	17.3028	4.46e-07	0.0165	CCCCACCCCCACCCCCACCC
SP2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	32	+	17.7586	4.48e-07	0.000581	CCCCCGCCCCCGCCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	79	+	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	79	+	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	79	+	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	79	+	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	87	+	17.7586	4.48e-07	0.000581	GCCCCTCCTCCCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	16	30	-	17.7586	4.48e-07	0.000581	GCCCCACCCCCCCGG
SP2	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	28	42	-	17.7586	4.48e-07	0.000581	GCCCCTCCTCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	36	50	-	17.7586	4.48e-07	0.000581	GGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	36	50	-	17.7586	4.48e-07	0.000581	GGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	67	81	-	17.7586	4.48e-07	0.000581	GCCCCGCCCCGTCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	83	97	-	17.7586	4.48e-07	0.000581	CCCCCGCCCCCGCCA
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	-	18.1061	4.48e-07	0.0105	CGTTGCCATGGCACCC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	-	18.1061	4.48e-07	0.0105	CGTTGCCATGGCACCC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	-	18.1061	4.48e-07	0.0105	CGTTGCCATGGCACCC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	54	74	-	17.8163	4.48e-07	0.000913	AGGGGAGAGCAGGGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	54	74	-	17.8163	4.48e-07	0.000913	AGGGGAGAGCAGGGAGGGGGA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	77	90	-	16.8269	4.48e-07	0.0605	GGAGAATGACTCAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	21	37	-	18.0545	4.49e-07	0.00263	CAGGCCCCGCCCCCGGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	21	37	-	18.0545	4.49e-07	0.00263	CAGGCCCCGCCCCCGGA
GATA1::TAL1	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	48	65	+	17.3636	4.5e-07	0.349	CTTATCAGGCGCGGCCAG
EGR1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	29	42	-	17.8846	4.53e-07	0.00159	TCCCCACCCCCACC
EGR1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	86	+	17.8846	4.53e-07	0.00159	TCCCCACCCCCACC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	45	+	17.2661	4.53e-07	0.0165	CCCCCCCCCCCCCCCCCCGC
RFX5	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	-	17.8103	4.54e-07	0.016	GGTTGCTAGGGCAACG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	31	41	+	15.1379	4.54e-07	0.0788	GCCTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	31	41	+	15.1379	4.54e-07	0.0788	GCCTGTGGTTT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	73	87	+	18.1857	4.55e-07	0.0338	GCGGGTCAGAGTTCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	73	87	+	18.1857	4.55e-07	0.0338	GCGGGTCAGAGTTCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	34	47	+	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	55	68	+	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	6	19	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	6	19	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	9	22	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	29	42	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	31	44	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	54	67	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	54	67	-	18.431	4.55e-07	0.00642	GGCCCCGCCCCCTC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	11	31	+	17.7959	4.55e-07	0.000922	GGGGGAGGAGTGGGGTGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	11	31	+	17.7959	4.55e-07	0.000922	GGGGGAGGAGTGGGGTGGAGT
Rfx1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	69	82	-	17.931	4.56e-07	0.0172	GGCGCCATGGCGAC
Rfx1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	33	46	+	17.931	4.56e-07	0.0172	GGCGCCATGGCGAC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	7	18	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	7	18	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	10	21	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	30	41	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	32	43	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	40	51	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	41	52	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	55	66	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	55	66	-	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	10	20	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	12	22	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	11	21	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	23	33	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	24	34	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	24	34	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	25	35	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	29	39	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	22	32	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	24	34	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	26	36	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	26	36	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	29	39	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	43	53	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	43	53	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	55	65	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	55	65	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	55	65	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	62	72	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	60	70	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	70	80	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	70	80	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	60	70	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	70	80	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	76	86	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	69	79	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	69	79	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	79	89	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	69	79	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	81	91	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	76	86	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	80	90	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	94	104	+	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	85	95	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	93	103	-	18.4727	4.58e-07	0.00168	GCGCATGCGCG
SP8	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	37	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	41	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	46	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	67	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	67	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	69	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	69	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	74	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	74	+	17.3158	4.58e-07	0.00458	GCCCCGCCCCCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	104	114	-	18.3276	4.58e-07	0.0586	CCGCCCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	104	114	-	18.3276	4.58e-07	0.0586	CCGCCCACGCG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	9	19	-	16.9655	4.58e-07	0.00952	GGGCGGGAAAG
E2F6	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	49	59	-	16.9655	4.58e-07	0.00952	GGGCGGGAAAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	87	97	-	16.9655	4.58e-07	0.00952	GGGCGGGAAAG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	+	17.9344	4.59e-07	0.0537	AGCCCCTGGGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	+	17.9344	4.59e-07	0.0537	AGCCCCTGGGGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	21	34	-	17.8654	4.61e-07	0.0016	GCCCCGCCCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	21	34	-	17.8654	4.61e-07	0.0016	GCCCCGCCCCCGGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	26	39	-	17.8654	4.61e-07	0.0016	GCCCCGCCCCCGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	40	60	+	17.7755	4.62e-07	0.000932	GGGGGAAGGTGGAAAAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	40	60	+	17.7755	4.62e-07	0.000932	GGGGGAAGGTGGAAAAGAGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	17	34	-	6.89474	4.64e-07	0.00692	GGGAGGAAGGGAGGGAGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	21	35	+	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	21	35	+	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	21	35	+	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	21	35	+	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	102	+	17.7241	4.66e-07	0.000587	CCCCCGCCCCTGCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	102	+	17.7241	4.66e-07	0.000587	CCCCCGCCCCTGCGC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	98	112	+	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	3	17	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
SP2	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	13	27	-	17.7241	4.66e-07	0.000587	CCCCCGCCCCTGCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	29	43	-	17.7241	4.66e-07	0.000587	GTCCCGCCTCCTTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	29	43	-	17.7241	4.66e-07	0.000587	GTCCCGCCTCCTTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	29	43	-	17.7241	4.66e-07	0.000587	GTCCCGCCTCCTTCT
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	80	94	-	17.7241	4.66e-07	0.000587	GCTCCGCCTCCTGCC
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	2	17	+	17.4727	4.66e-07	0.0628	GGGAGCAAAGTCCAGG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	13	33	+	18.1935	4.68e-07	0.0334	TTTCGCTTTCACTTTACTTTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	25	45	+	18.1935	4.68e-07	0.0334	TTTCGCTTTCACTTTACTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	25	45	+	18.1935	4.68e-07	0.0334	TTTCGCTTTCACTTTACTTTT
RFX4	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	+	17.9545	4.69e-07	0.0202	CGTTTCTATGGAAACG
RFX4	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	-	17.9545	4.69e-07	0.0202	CGTTTCTATGGAAACG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	14	34	+	17.7551	4.69e-07	0.000944	GGAGGAAGGGGCGGCGAGGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	49	62	+	17.8462	4.71e-07	0.00163	CCTCCTCCCCCACC
PLAG1	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	68	81	-	18.1735	4.72e-07	0.0353	GTGGCCGAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	34	47	+	18.1735	4.72e-07	0.0353	GTGGCCGAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	34	47	+	18.1735	4.72e-07	0.0353	GTGGCCGAAGGGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	24	38	-	17.7069	4.72e-07	0.000592	GTCCCGCCCCCGACT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	24	38	-	17.7069	4.72e-07	0.000592	GTCCCGCCCCCGACT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	24	38	-	17.7069	4.72e-07	0.000592	GTCCCGCCCCCGACT
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	64	75	-	16.2289	4.73e-07	0.444	TTATGCAAATGA
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	3	16	+	18.2623	4.74e-07	0.161	GGCCCCCCGCAGTG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	3	16	+	18.2623	4.74e-07	0.161	GGCCCCCCGCAGTG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	73	87	+	18.1286	4.75e-07	0.0338	GAGGGTCAGAGTTCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	73	87	+	18.1286	4.75e-07	0.0338	GAGGGTCAGAGTTCA
USF1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	32	42	-	17.2245	4.75e-07	0.015	GTCACGTGACC
USF1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	35	45	-	17.2245	4.75e-07	0.015	GTCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	47	57	-	17.2245	4.75e-07	0.015	GTCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	47	57	-	17.2245	4.75e-07	0.015	GTCACGTGACC
USF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	58	68	-	17.2245	4.75e-07	0.015	GTCACGTGACC
Myog	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	6	16	-	15.8163	4.75e-07	0.0362	GACAGCTGCTG
USF1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	43	+	17.2245	4.75e-07	0.015	GTCACGTGACC
USF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	69	+	17.2245	4.75e-07	0.015	GTCACGTGACC
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	+	17.6531	4.76e-07	0.0508	TACAAGTCCCGGCATGCT
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	+	17.6531	4.76e-07	0.0508	TACAAGTCCCGGCATGCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	63	79	-	17.9273	4.78e-07	0.00276	CAAGCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	63	79	-	17.9273	4.78e-07	0.00276	CAAGCCCCGCCCCCGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	29	+	17.6897	4.79e-07	0.000598	CCCCCGCCCCTCCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	29	+	17.6897	4.79e-07	0.000598	CCCCCGCCCCTCCGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	46	+	17.6897	4.79e-07	0.000598	CCCCCGCCCCCCGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	25	38	+	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	25	38	+	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	25	38	+	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	25	38	+	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	26	39	-	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	76	89	+	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	77	90	-	17.169	4.8e-07	0.0444	AGAAAGGGGAAGTC
TP53	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	36	53	-	17.6327	4.82e-07	0.0508	GGCTTGCCTGGGCTTGTT
Sox1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	43	-	18.1897	4.82e-07	0.22	AACAATATCATTGCA
Sox1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	43	-	18.1897	4.82e-07	0.22	AACAATATCATTGCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	67	80	+	18.3621	4.82e-07	0.00643	TGCCACGCCCCTCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	67	80	+	18.3621	4.82e-07	0.00643	TGCCACGCCCCTCA
KLF14	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	12	25	-	18.3621	4.82e-07	0.00643	GGCCACGCCCCTCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	39	59	+	17.7143	4.83e-07	0.000968	GGAGGAGGGAAGTGAAAAAAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	39	59	+	17.7143	4.83e-07	0.000968	GGAGGAGGGAAGTGAAAAAAG
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	88	99	+	17.4423	4.85e-07	0.0092	AAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	88	99	+	17.4423	4.85e-07	0.0092	AAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	88	99	+	17.4423	4.85e-07	0.0092	AAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	88	99	+	17.4423	4.85e-07	0.0092	AAAGATGGCGGC
EHF	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	34	45	+	17.8197	4.86e-07	0.0586	GACCCGGAAGTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	15	+	17.6724	4.88e-07	0.000599	GCCCCGCCCCGGCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	15	+	17.6724	4.88e-07	0.000599	GCCCCGCCCCGGCGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	34	48	+	17.6724	4.88e-07	0.000599	GTCCCGCCCCGTGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	34	48	+	17.6724	4.88e-07	0.000599	GTCCCGCCCCGTGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	21	35	-	17.6724	4.88e-07	0.000599	GCCCCGCCCTCACCG
SP2	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	23	37	-	17.6724	4.88e-07	0.000599	GCCCCACCCCCACCC
SP2	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	92	+	17.6724	4.88e-07	0.000599	GCCCCACCCCCACCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	94	+	17.6724	4.88e-07	0.000599	GCCCCGCCCTCACCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	94	+	17.6724	4.88e-07	0.000599	GCCCCGCCCTCACCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	94	+	17.6724	4.88e-07	0.000599	GCCCCGCCCTCACCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	70	84	-	17.6724	4.88e-07	0.000599	CGCCCGCCCCTTCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	11	28	-	6.78947	4.89e-07	0.00692	GGGAGGGAGGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	15	32	-	6.78947	4.89e-07	0.00692	GGGAGGGAGGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	19	36	-	6.78947	4.89e-07	0.00692	GGGAGGGAGGGAGGGAGG
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	-	16.0517	4.89e-07	0.144	AGCATGCCGGGACTTGTA
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	-	16.0517	4.89e-07	0.144	AGCATGCCGGGACTTGTA
RXRG	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	20	33	+	17.0213	4.89e-07	0.0881	GGGGTCATAGTTCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	24	44	+	17.6939	4.91e-07	0.000973	GGAGCTGGAGGGAGGAGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	24	44	+	17.6939	4.91e-07	0.000973	GGAGCTGGAGGGAGGAGAGAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	1	21	-	17.6939	4.91e-07	0.000973	GGGGGAGTAGGTGGGGAAAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	17	37	-	17.6939	4.91e-07	0.000973	GGGGGCGGAGGAGGCGGGGGC
EGR1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	44	57	-	17.7692	4.92e-07	0.00167	CCCCTGCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	96	109	-	17.7692	4.92e-07	0.00167	CCCCTGCCCCCGCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	6	19	+	17.7692	4.92e-07	0.00167	CCCCTGCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	20	33	+	17.7692	4.92e-07	0.00167	CCCCTGCCCCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	58	71	+	17.7692	4.92e-07	0.00167	CCCCTGCCCCCGCC
SP2	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	48	+	17.6552	4.96e-07	0.000606	TCCCCGCCCCCGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	45	59	-	17.6552	4.96e-07	0.000606	CCCCCGCCTCCCGGC
SP2	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	67	81	-	17.6552	4.96e-07	0.000606	TCCCCGCCCCCGCTC
RFX5	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	+	17.6552	4.97e-07	0.016	CGTTTCCATGGTGACC
RFX5	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	-	17.6552	4.97e-07	0.016	CGTTTCCATGGTGACC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	29	49	+	17.6735	4.98e-07	0.000981	GAAGGAGGAAGAAGGGAAAAT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	29	49	+	17.6735	4.98e-07	0.000981	GAAGGAGGAAGAAGGGAAAAT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	39	59	+	17.6735	4.98e-07	0.000981	TGGGCAGGAGGAGAAAGAAGA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	-	18.4694	4.99e-07	0.11	GATGACTCATC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	27	43	+	17.8364	4.99e-07	0.00279	ATGGCCCCGCCCCCAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	27	43	+	17.8364	4.99e-07	0.00279	ATGGCCCCGCCCCCAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	27	43	+	17.8364	4.99e-07	0.00279	ATGGCCCCGCCCCCAGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	27	43	+	17.8364	4.99e-07	0.00279	ATGGCCCCGCCCCCAGG
TCF4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	19	+	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	33	-	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	33	-	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	33	-	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	33	-	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	33	-	14.7347	5.03e-07	0.0654	CGCACCTGCG
TCF4	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	91	+	14.7347	5.03e-07	0.0654	CGCACCTGCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	16.7091	5.03e-07	0.0765	GGCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	16.7091	5.03e-07	0.0765	GGCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	16.7091	5.03e-07	0.0765	GGCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	16.7091	5.03e-07	0.0765	GGCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	16.6379	5.03e-07	0.0987	GGCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	16.6379	5.03e-07	0.0987	GGCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	16.6379	5.03e-07	0.0987	GGCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	16.6379	5.03e-07	0.0987	GGCACGTGCC
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	+	17.9655	5.03e-07	0.0521	CGCAGCTGCG
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	-	17.9655	5.03e-07	0.0521	CGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	+	17.9655	5.03e-07	0.0521	CGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	-	17.9655	5.03e-07	0.0521	CGCAGCTGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	8	18	-	16.7586	5.03e-07	0.0084	GGGCGGGAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	8	18	-	16.7586	5.03e-07	0.0084	GGGCGGGAAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	8	18	-	16.7586	5.03e-07	0.0084	GGGCGGGAAGC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	51	61	-	16.7586	5.03e-07	0.0084	GGGCGGGAAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	18	31	-	17.75	5.04e-07	0.00168	CTCCCGCCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	18	31	-	17.75	5.04e-07	0.00168	CTCCCGCCCCCTCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	29	+	17.75	5.04e-07	0.00168	CTCCCGCCCCCTCT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	69	+	17.75	5.04e-07	0.00168	GCCCCGCCCCCTGC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	18	31	+	18.0918	5.05e-07	0.0353	GGGGGTAACGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	27	47	+	17.6531	5.06e-07	0.000984	GGTGGAGACGGGGCGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	27	47	+	17.6531	5.06e-07	0.000984	GGTGGAGACGGGGCGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	32	52	-	17.6531	5.06e-07	0.000984	GGTGGAGACGGGGCGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	32	52	-	17.6531	5.06e-07	0.000984	GGTGGAGACGGGGCGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	57	77	-	17.6531	5.06e-07	0.000984	GGAGGGCGAGGAGGAGGAGGA
SP2	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	35	+	17.6379	5.06e-07	0.000614	GCTCCGCCCCCGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	66	+	17.6379	5.06e-07	0.000614	GCTCCGCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	66	+	17.6379	5.06e-07	0.000614	GCTCCGCCCCCGCCT
SP2	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	80	94	-	17.6379	5.06e-07	0.000614	GCTCCGCCCCCGCCT
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	13	32	-	17.0183	5.06e-07	0.0165	CCCCACCCCCACCCCCACCA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	15	32	+	6.69737	5.06e-07	0.00704	CGGAGGGAGGAAGGAAGC
EGR4	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	79	94	-	17.6364	5.07e-07	0.0258	TCCTGCCCACGCACTT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	21	36	+	17.6364	5.07e-07	0.0258	TCCTGCCCACGCACTT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	21	36	+	17.6364	5.07e-07	0.0258	TCCTGCCCACGCACTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	21	36	+	17.6364	5.07e-07	0.0258	TCCTGCCCACGCACTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	21	36	+	17.6364	5.07e-07	0.0258	TCCTGCCCACGCACTT
Pou2f3	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	9	24	-	17.4268	5.09e-07	0.23	CCGTATGCAAATGACC
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	26	40	+	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	26	40	+	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
ZIC3	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	57	71	+	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	44	58	-	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	44	58	-	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	75	89	-	17.9857	5.11e-07	0.043	CCCCTCCCGCTGCGC
SP4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	45	61	+	17.7818	5.12e-07	0.00282	CCGGCCCCGCCCCCACG
SP4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	54	70	-	17.7818	5.12e-07	0.00282	CCGGCCCCGCCCCCACG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	23	37	+	17.6207	5.13e-07	0.000616	GGCCCGCCCCGTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	23	37	+	17.6207	5.13e-07	0.000616	GGCCCGCCCCGTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	23	37	+	17.6207	5.13e-07	0.000616	GGCCCGCCCCGTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	23	37	+	17.6207	5.13e-07	0.000616	GGCCCGCCCCGTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	18	32	-	17.6207	5.13e-07	0.000616	GCCCCGCCCCCCGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	18	32	-	17.6207	5.13e-07	0.000616	GCCCCGCCCCCCGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	18	32	-	17.6207	5.13e-07	0.000616	GCCCCGCCCCCCGAA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	18	32	-	17.6207	5.13e-07	0.000616	GCCCCGCCCCCCGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	68	88	+	17.6327	5.13e-07	0.000994	GGGGGCGGGGGTGGAGAAAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	27	47	-	17.6327	5.13e-07	0.000994	GGGGGCGGGGGTGGAGAAAGG
SP8	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	29	40	-	17.25	5.15e-07	0.00458	GCCCCGCCCACT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	32	43	-	17.25	5.15e-07	0.00458	GACACGCCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	32	43	-	17.25	5.15e-07	0.00458	GACACGCCCACC
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	30	44	+	18	5.15e-07	0.0339	CTGGGTCAAAGGGCA
ZBTB33	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	72	86	-	17.7273	5.17e-07	0.00936	TTCTCGCGGTATCTG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	29	43	+	17.7273	5.17e-07	0.00936	TTCTCGCGGTATCTG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	37	-	16.8288	5.17e-07	0.0868	TTGGGGCAGAGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	37	-	16.8288	5.17e-07	0.0868	TTGGGGCAGAGGCCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	51	65	-	16.8288	5.17e-07	0.0868	GTGGGGGAAGGGGCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	93	107	+	16.8288	5.17e-07	0.0868	TTGGGGCAGAGGCCA
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	-	18.1346	5.18e-07	0.0822	AGCATGCCGGGACTTGTA
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	-	18.1346	5.18e-07	0.0822	AGCATGCCGGGACTTGTA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	92	112	+	17.6122	5.21e-07	0.001	GAAGCAGGCAGGAGAGGGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	56	76	-	17.6122	5.21e-07	0.001	GAGGAAGGAAAGGCAGGAGGG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	8	25	-	18.0488	5.21e-07	0.0105	ACCCATCTGATTGGTGGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	38	+	17.6034	5.24e-07	0.000625	GCCCCGCCCTCCCTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	38	+	17.6034	5.24e-07	0.000625	GCCCCGCCCTCCCTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	21	35	-	17.6034	5.24e-07	0.000625	GTCCCGCCCCTCTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	21	35	-	17.6034	5.24e-07	0.000625	GTCCCGCCCCTCTGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	55	71	-	17.7273	5.25e-07	0.00284	CCGGCCCCGCCCCCCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	55	71	-	17.7273	5.25e-07	0.00284	CCGGCCCCGCCCCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	20	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	24	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	36	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	36	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	36	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	36	+	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	65	75	-	16.3333	5.27e-07	0.00272	ACCACGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	95	105	-	16.3333	5.27e-07	0.00272	ACCACGCCCCC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	15	28	-	17.6731	5.34e-07	0.0017	GCACCGCCCACGCC
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	74	88	-	14.8909	5.36e-07	0.0684	AAAGAAACTGAAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	74	88	-	14.8909	5.36e-07	0.0684	AAAGAAACTGAAAGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	18	38	-	17.5714	5.37e-07	0.00102	GGGAGAGCGGGGAGGGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	18	38	-	17.5714	5.37e-07	0.00102	GGGAGAGCGGGGAGGGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	18	38	-	17.5714	5.37e-07	0.00102	GGGAGAGCGGGGAGGGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	18	38	-	17.5714	5.37e-07	0.00102	GGGAGAGCGGGGAGGGGGGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	72	92	-	17.5714	5.37e-07	0.00102	GAAGAAAGAAGAGAAGGGAGG
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	62	78	+	16.5738	5.39e-07	0.124	GGGTCATTCCAAGTTCA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	29	43	+	18.3607	5.4e-07	0.02	GGCCACGCCCCCAAC
Klf12	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	26	40	-	18.3607	5.4e-07	0.02	GGCCACGCCCCGCTT
SP2	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	5	19	+	17.569	5.4e-07	0.000642	GCTCCGCCCTCCCCC
SP2	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	96	110	-	17.569	5.4e-07	0.000642	GCTCCGCCCTCCCCC
USF2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	32	42	-	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	35	45	-	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	47	57	-	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	47	57	-	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	58	68	-	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	43	+	16.8367	5.41e-07	0.017	GTCACGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	69	+	16.8367	5.41e-07	0.017	GTCACGTGACC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	6	16	-	15.8776	5.41e-07	0.0832	GACAGCTGCTG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	-	17.5	5.42e-07	0.016	CGTCGCCATGGGAACC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	-	17.5	5.42e-07	0.016	CGTCGCCATGGGAACC
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	+	18.0577	5.45e-07	0.0822	TACAAGTCCCGGCATGCT
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	+	18.0577	5.45e-07	0.0822	TACAAGTCCCGGCATGCT
ATF7	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	29	42	-	18.4714	5.48e-07	0.0669	CTATGACGTCATTA
ATF7	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	73	86	+	18.4714	5.48e-07	0.0669	CTATGACGTCATTA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	54	68	-	17.5517	5.49e-07	0.000649	GCCCCGCCCCGACCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	54	68	-	17.5517	5.49e-07	0.000649	GCCCCGCCCCGACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	54	68	-	17.5517	5.49e-07	0.000649	GCCCCGCCCCGACCC
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	67	80	+	16.0727	5.49e-07	0.0818	GGGGTGAAGGGTCA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	52	66	+	18.1034	5.52e-07	0.0155	CCCCGCCCCCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	42	56	-	18.1034	5.52e-07	0.0155	CCCCGCCCCCGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	42	56	-	18.1034	5.52e-07	0.0155	CCCCGCCCCCGCGCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	35	48	-	17.6346	5.52e-07	0.0017	GCCCCTCCCCCTCA
EGR1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	80	+	17.6346	5.52e-07	0.0017	GCCCCTCCCCCTCA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	23	40	+	6.51316	5.52e-07	0.00742	GGACGGCAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	75	92	-	6.51316	5.52e-07	0.00742	GGACGGCAGGAAGGAGGG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	37	47	-	15.3455	5.53e-07	0.261	GAGGTGTGAAA
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	37	47	-	15.3455	5.53e-07	0.261	GAGGTGTGAAA
Hoxa9	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	28	38	-	17.2368	5.53e-07	0.525	GCCATCAATCA
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	28	38	-	16.6207	5.53e-07	0.347	AAATCACAGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	64	84	-	17.5306	5.54e-07	0.00105	GAGAGAAGAGGAGGGGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	77	97	-	17.5306	5.54e-07	0.00105	GAGGGAGGCGGGGCGGAGAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	10	26	+	17.6182	5.54e-07	0.00284	GAGACCCCGCCCCCAAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	10	26	+	17.6182	5.54e-07	0.00284	GAGACCCCGCCCCCAAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	10	26	+	17.6182	5.54e-07	0.00284	GAGACCCCGCCCCCAAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	10	26	+	17.6182	5.54e-07	0.00284	GAGACCCCGCCCCCAAC
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	86	-	17.3077	5.55e-07	0.141	TCAGGGCAAAGTCCA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	86	-	17.3077	5.55e-07	0.141	TCAGGGCAAAGTCCA
NFYA	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	8	25	+	17.9634	5.57e-07	0.011	AGGATTCTGATTGGCTAG
SP2	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	7	21	+	17.5345	5.58e-07	0.000658	TTCCCGCCTCCCGCC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	94	108	-	17.5345	5.58e-07	0.000658	TTCCCGCCTCCCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	15	25	+	16.9091	5.58e-07	0.0164	GCACTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	38	-	16.9091	5.58e-07	0.0164	GCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	77	87	+	16.9091	5.58e-07	0.0164	GCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	77	87	+	16.9091	5.58e-07	0.0164	GCACTTCCGGC
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	+	16.6909	5.58e-07	0.0519	CGCCTCAGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	+	16.6909	5.58e-07	0.0519	CGCCTCAGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	-	16.6909	5.58e-07	0.0519	CGCCTCAGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	-	16.6909	5.58e-07	0.0519	CGCCTCAGGCG
SP4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	12	28	+	17.6	5.58e-07	0.00284	CTAGCCCCGCCTCCTCC
SP4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	4	20	-	17.6	5.58e-07	0.00284	GCGGCCACGCCCCCCGC
BATF3	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	27	40	-	16.2273	5.59e-07	0.0366	TGATGACGTCACGA
BATF3	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	75	88	+	16.2273	5.59e-07	0.0366	TGATGACGTCACGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	40	+	16.789	5.6e-07	0.0165	CCACCCCCCCCCCCCCCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	42	+	16.789	5.6e-07	0.0165	ACCCCCCCCCCCCCCCCCCC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	81	101	-	17.5102	5.62e-07	0.00106	GGAGCGGGAGGAGGAGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	81	101	-	17.5102	5.62e-07	0.00106	GGAGCGGGAGGAGGAGGAAGA
EGR1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	46	59	-	17.6154	5.63e-07	0.0017	CGCCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	20	+	17.6154	5.63e-07	0.0017	GACCCGCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	20	+	17.6154	5.63e-07	0.0017	GACCCGCCCCCACC
EGR1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	56	69	+	17.6154	5.63e-07	0.0017	CGCCCGCCCCCGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	23	39	+	17.5818	5.63e-07	0.00284	AAGACCACGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	23	39	+	17.5818	5.63e-07	0.00284	AAGACCACGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	23	39	+	17.5818	5.63e-07	0.00284	AAGACCACGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	23	39	+	17.5818	5.63e-07	0.00284	AAGACCACGCCCCCGCC
Rfx1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	88	101	-	17.7241	5.64e-07	0.0197	GTCGCCTTGGAAAC
Rfx1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	14	27	+	17.7241	5.64e-07	0.0197	GTCGCCTTGGAAAC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	13	27	+	18.2951	5.65e-07	0.02	GGCCACGCCCCCACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	13	27	+	18.2951	5.65e-07	0.02	GGCCACGCCCCCACC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	13	27	+	18.2951	5.65e-07	0.02	GGCCACGCCCCCACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	13	27	+	18.2951	5.65e-07	0.02	GGCCACGCCCCCACC
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	49	68	+	16.7615	5.66e-07	0.0165	CCCCACCCCACCCCCCTCTC
EGR3	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	35	49	+	18.0172	5.67e-07	0.0155	CCCCGCCCCCGCTCT
EGR3	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	66	80	-	18.0172	5.67e-07	0.0155	CCCCGCCCCCGCTCT
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	18	32	-	17.4043	5.68e-07	0.227	CAGGATGAGGTCATC
SP2	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	2	16	-	17.5172	5.69e-07	0.000669	GGCCCGCCCCCGACG
SP2	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	99	113	+	17.5172	5.69e-07	0.000669	GGCCCGCCCCCGACG
YY1	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	35	46	+	17.3462	5.69e-07	0.0092	CAACATGGCTGC
YY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	69	80	-	17.3462	5.69e-07	0.0092	CAACATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	69	80	-	17.3462	5.69e-07	0.0092	CAACATGGCTGC
NFYB	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	51	65	-	17.3846	5.69e-07	0.0303	GCTTCGGCCAATCAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	36	56	-	17.4898	5.7e-07	0.00107	GGGGGCGGGGCGTGAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	36	56	-	17.4898	5.7e-07	0.00107	GGGGGCGGGGCGTGAGGAGGG
NRF1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	9	19	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	11	21	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	13	23	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	13	23	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	13	23	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	13	23	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	4	14	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	4	14	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	8	18	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	11	21	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	29	39	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	29	39	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	31	41	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	28	38	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	32	42	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	42	52	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	32	42	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	32	42	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	32	42	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	32	42	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	49	59	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	59	69	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	59	69	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	56	66	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	70	80	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	70	80	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	63	73	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	69	79	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	74	84	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	94	104	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	101	111	+	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	92	102	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	94	104	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	96	106	-	18.2727	5.71e-07	0.00168	GCGCGTGCGCA
MEF2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	26	37	-	18.6909	5.73e-07	0.0759	GCTAAAAATAGA
MEF2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	26	37	-	18.6909	5.73e-07	0.0759	GCTAAAAATAGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	28	41	-	17.5962	5.76e-07	0.0017	GCCCCGCCTCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	28	41	-	17.5962	5.76e-07	0.0017	GCCCCGCCTCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	28	41	-	17.5962	5.76e-07	0.0017	GCCCCGCCTCCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	28	41	-	17.5962	5.76e-07	0.0017	GCCCCGCCTCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	16	29	+	17.5962	5.76e-07	0.0017	CCGCCTCCCCCGCT
EGR1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	87	+	17.5962	5.76e-07	0.0017	GCCCCGCCTCCGCA
JUNB	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	53	63	+	16.2857	5.78e-07	0.0541	GGATGACTCAG
FOSL1	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	16	26	+	16.7091	5.78e-07	0.0322	GGTGACTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	33	43	-	16.7091	5.78e-07	0.0322	GGTGACTCAGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	33	43	-	16.7091	5.78e-07	0.0322	GGTGACTCAGG
FOSL1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	72	82	+	16.7091	5.78e-07	0.0322	GGTGACTCAGG
FOSL1	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	89	99	-	16.7091	5.78e-07	0.0322	GGTGACTCAGG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	16	26	+	15.2	5.78e-07	0.0729	ACCCGGAAGTT
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	27	37	-	16.2857	5.78e-07	0.0541	GGATGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	27	37	-	16.2857	5.78e-07	0.0541	GGATGACTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	52	62	-	16.2857	5.78e-07	0.0541	GGATGACTCAG
SP8	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	4	15	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	14	25	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	17	28	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	18	29	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	21	32	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	21	32	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	21	32	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	21	32	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	21	32	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	35	46	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	37	48	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	49	60	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	56	67	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	57	68	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	57	68	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	74	85	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	74	85	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	82	93	-	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	21	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	33	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	41	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	41	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	43	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	59	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	66	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	70	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	74	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	74	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	78	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	79	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	98	+	16.9474	5.79e-07	0.00458	GCCCCGCCCCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	17	37	+	17.4694	5.79e-07	0.00108	GGGGGTGGGGGTGGGGGTGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	23	43	+	17.4694	5.79e-07	0.00108	GGGGGTGGGGGTGGGGGTGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	29	49	+	17.4694	5.79e-07	0.00108	GGGGGTGGGGGTGGGGGTGGG
Zfx	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	17	30	+	17.197	5.82e-07	0.00493	CTCGCCCCGGCCTG
Gabpa	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	28	38	+	17.1148	5.83e-07	0.00845	CCGGAAGTGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	77	87	-	17.1148	5.83e-07	0.00845	CCGGAAGTGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	77	87	-	17.1148	5.83e-07	0.00845	CCGGAAGTGGA
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	30	46	+	11.9438	5.83e-07	0.137	CTGGGTCAAAGGGCAGC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	20	34	+	17.1731	5.83e-07	0.0639	GGGTCACCTAGCCCC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	48	62	-	17.1731	5.83e-07	0.0639	GGGTCACCTAGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	12	26	+	17.4828	5.84e-07	0.000682	TGCCCGCCCCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	12	26	+	17.4828	5.84e-07	0.000682	TGCCCGCCCCTCCCC
SP2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	39	+	17.4828	5.84e-07	0.000682	GCCCCGCCCCAACCC
SP2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	76	90	-	17.4828	5.84e-07	0.000682	GCCCCGCCCCAACCC
SP2	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	89	103	-	17.4828	5.84e-07	0.000682	TGCCCGCCCCTCCCC
RFX5	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	+	17.3276	5.87e-07	0.016	CGTTTCTATGGAAACG
RFX5	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	-	17.3276	5.87e-07	0.016	CGTTTCTATGGAAACG
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	11	+	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	11	+	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	16	+	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	9	19	-	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	98	+	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	106	+	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	99	109	-	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	99	109	-	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
Myog	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	104	114	-	15.7755	5.88e-07	0.0362	GGCAGCTGCGG
BATF3	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	27	40	+	16.1212	5.93e-07	0.0366	TCGTGACGTCATCA
BATF3	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	75	88	-	16.1212	5.93e-07	0.0366	TCGTGACGTCATCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	25	42	-	6.34211	5.93e-07	0.00783	GGAAGGAAGAAGGGAGGG
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	74	87	+	15.8545	5.94e-07	0.0818	AGGGTCAGAGTTCA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	74	87	+	15.8545	5.94e-07	0.0818	AGGGTCAGAGTTCA
KLF14	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	2	15	+	18.1034	5.94e-07	0.00681	GACCCCGCCCCCTT
KLF14	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	76	89	+	18.1034	5.94e-07	0.00681	GACCCCGCCCCCTT
KLF14	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	26	39	-	18.1034	5.94e-07	0.00681	GACCCCGCCCCCTT
KLF14	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	100	113	-	18.1034	5.94e-07	0.00681	GACCCCGCCCCCTT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	38	48	+	16.931	5.96e-07	0.011	GGGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	38	48	+	16.931	5.96e-07	0.011	GGGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	38	48	+	16.931	5.96e-07	0.011	GGGCGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	38	48	+	16.931	5.96e-07	0.011	GGGCGGGAAGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	94	104	+	16.931	5.96e-07	0.011	GGGCGGGAAGA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	3	13	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	4	14	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	4	14	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	4	14	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	4	14	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	6	16	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	6	16	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	6	16	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	9	19	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	14	24	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	15	25	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	15	25	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	20	30	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	12	22	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	27	37	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	27	37	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	32	42	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	45	55	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	47	57	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	43	53	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	53	63	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	46	56	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	59	69	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	52	62	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	58	68	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	60	70	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	73	83	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	93	103	+	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	90	100	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	91	101	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
E2F4	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	96	106	-	16.6897	5.96e-07	0.0084	GGGCGGGAGGG
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	64	75	-	17.2097	5.96e-07	0.447	TTATGCAAATGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	19	39	-	17.4286	5.96e-07	0.00109	GGTGGAATGGGGGGAGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	19	39	-	17.4286	5.96e-07	0.00109	AGAGCAGGGGGGGAAGGAAAC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	19	39	-	17.4286	5.96e-07	0.00109	GGTGGAATGGGGGGAGGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	57	77	-	17.4286	5.96e-07	0.00109	GGAGCAGCGGGGTGGGGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	57	77	-	17.4286	5.96e-07	0.00109	GGAGCAGCGGGGTGGGGTGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	57	77	-	17.4286	5.96e-07	0.00109	GGAGCAGCGGGGTGGGGTGGG
SP2	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	28	+	17.4655	5.98e-07	0.000693	TCCCCTCCCCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	56	+	17.4655	5.98e-07	0.000693	GTCCCGCCCCCAGGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	56	+	17.4655	5.98e-07	0.000693	GTCCCGCCCCCAGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	56	+	17.4655	5.98e-07	0.000693	GTCCCGCCCCCAGGG
SP2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	59	73	-	17.4655	5.98e-07	0.000693	GTCCCGCCCCCAGGG
Klf12	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	13	27	-	18.2131	5.99e-07	0.02	GGCCACGCCCCCTCC
Klf12	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	42	56	-	18.2131	5.99e-07	0.02	GGCCACGCCCCCTCC
Klf12	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	59	73	+	18.2131	5.99e-07	0.02	GGCCACGCCCCCTCC
Klf12	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	88	102	+	18.2131	5.99e-07	0.02	GGCCACGCCCCCTCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	70	84	-	17.5909	5.99e-07	0.00965	ATCTCGCGAGAATTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	31	45	+	17.5909	5.99e-07	0.00965	ATCTCGCGAGAATTG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	31	45	+	17.5909	5.99e-07	0.00965	ATCTCGCGAGAATTG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	31	45	+	17.5909	5.99e-07	0.00965	ATCTCGCGAGAATTG
RFX5	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	+	17.2931	5.99e-07	0.016	CGTTTCCATAGAAACG
RFX5	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	-	17.2931	5.99e-07	0.016	CGTTTCCATAGAAACG
EGR1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	47	60	-	17.5385	5.99e-07	0.0017	GCCCCACCCACTCC
EGR1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	68	+	17.5385	5.99e-07	0.0017	GCCCCACCCACTCC
SP8	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	15	26	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	33	44	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	40	51	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	48	59	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	48	59	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	48	59	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	48	59	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	76	87	-	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	16	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	25	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	25	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	37	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	37	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	39	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	100	+	16.8816	6e-07	0.00458	GCCCCGCCCACC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	13	26	+	18.0862	6e-07	0.00681	GGCCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	13	26	+	18.0862	6e-07	0.00681	GGCCCCGCCCACCT
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	10	24	+	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
IRF9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	10	24	+	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
IRF9	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	55	69	+	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	46	60	-	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
IRF9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	46	60	-	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
IRF9	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	91	105	-	14.5455	6e-07	0.0684	CAAGAAACCGAAACC
RFX3	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	-	17.7273	6e-07	0.0137	GGTTGCCATGGCCACG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	28	-	17.8852	6e-07	0.161	CGCCCCCCGCGGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	52	-	17.8429	6.01e-07	0.0343	GGGGGTCAAGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	63	77	+	17.8429	6.01e-07	0.0343	GGGGGTCAAGGGGCG
KLF16	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	6	16	+	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	14	24	-	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	14	24	-	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	14	24	-	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	17	27	-	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	56	+	17.569	6.03e-07	0.00207	GCCACGCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	63	73	-	17.569	6.03e-07	0.00207	GCCACGCCCAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	2	22	+	17.4082	6.05e-07	0.00109	GGGGGTGGGATGGGTGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	48	68	+	17.4082	6.05e-07	0.00109	GAAGAAGAAAGGGAGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	57	77	+	17.4082	6.05e-07	0.00109	TGGGGAGGAGGCAGGGAAGGA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	46	62	-	17.4182	6.07e-07	0.00297	GCGGCCCCGCCCACCCT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	46	62	-	17.4182	6.07e-07	0.00297	GCGGCCCCGCCCACCCT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	46	62	-	17.4182	6.07e-07	0.00297	GCGGCCCCGCCCACCCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	46	62	-	17.4182	6.07e-07	0.00297	GCGGCCCCGCCCACCCT
YY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	85	96	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	85	96	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	86	97	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	90	101	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	91	102	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	91	102	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	101	112	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	101	112	+	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	13	24	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	14	25	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	14	25	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	18	29	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	18	29	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	18	29	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	18	29	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	18	29	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
YY1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	19	30	-	17.2308	6.07e-07	0.0092	GAAGATGGCGGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	26	40	-	17.4483	6.07e-07	0.000701	TCTCCGCCCCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	27	41	-	17.4483	6.07e-07	0.000701	CGCCCGCCCCCGCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	75	89	+	17.4483	6.07e-07	0.000701	TCTCCGCCCCCTCCC
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	27	37	+	16.5	6.08e-07	0.0641	GAAATGAGTCA
RXRB	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	68	-	15.8182	6.08e-07	0.0818	GAGGTCAGAGTTCA
RXRB	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	24	37	+	15.8182	6.08e-07	0.0818	GAGGTCAGAGTTCA
EGR1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	62	75	-	17.5192	6.1e-07	0.0017	CTCCCACCCCCGCT
EGR1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	53	+	17.5192	6.1e-07	0.0017	CTCCCACCCCCGCT
SP4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	54	70	+	17.4	6.12e-07	0.00297	GATGCCCCGCCCCTTCC
SP4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	45	61	-	17.4	6.12e-07	0.00297	GATGCCCCGCCCCTTCC
Mitf	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	20	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	13	22	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	13	22	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	13	22	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	13	22	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	39	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	57	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	69	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	64	73	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	64	73	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	64	73	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	64	73	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	109	+	13.5408	6.13e-07	0.0151	GGTCACGTGG
Arntl	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	31	40	+	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	75	+	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	75	+	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	95	+	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	95	+	15.3279	6.13e-07	0.0662	GGTCACGTGC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	64	74	-	17.1633	6.13e-07	0.0166	CCCACGTGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	64	74	-	17.1633	6.13e-07	0.0166	CCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	64	74	-	17.1633	6.13e-07	0.0166	CCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	64	74	-	17.1633	6.13e-07	0.0166	CCCACGTGACC
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	19	28	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	25	34	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	33	42	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	36	45	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	36	45	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	39	48	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	43	52	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	67	76	+	14.404	6.13e-07	0.0277	GGAGGGGGAA
MNT	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	14.6364	6.13e-07	0.247	ACCACGTGCC
Mitf	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	15	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	15	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	22	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	28	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	40	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	40	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	45	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	51	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	55	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	55	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	58	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	58	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	58	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	58	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	58	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	59	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	59	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	60	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Mitf	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	85	-	13.5408	6.13e-07	0.0151	GGTCACGTGG
Arntl	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	69	78	-	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	69	78	-	15.3279	6.13e-07	0.0662	GGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	69	78	-	15.3279	6.13e-07	0.0662	GGTCACGTGC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	5	14	+	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	5	14	+	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	5	14	+	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	5	14	+	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	58	67	+	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	64	73	-	15.1313	6.13e-07	0.0838	GGGGCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	64	73	-	15.1313	6.13e-07	0.0838	GGGGCTTTCC
USF1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	51	+	17.1633	6.13e-07	0.0166	CCCACGTGACC
MAX	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	14.9423	6.13e-07	0.276	ACCACGTGCC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	9	18	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	9	18	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	21	30	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	39	48	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	39	48	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	63	72	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	67	76	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	67	76	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	67	76	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	67	76	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	70	79	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	87	96	-	14.404	6.13e-07	0.0277	GGAGGGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	67	87	+	17.3878	6.14e-07	0.0011	GAGAGAGGGAGGGAAGGAGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	24	44	-	17.3878	6.14e-07	0.0011	GGGGGAGAGCGGCGAGGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	28	48	-	17.3878	6.14e-07	0.0011	GAGAGAGGGAGGGAAGGAGAA
KLF14	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	1	14	-	18.0517	6.17e-07	0.00681	GGCCACGCCCCCGA
KLF14	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	29	42	-	18.0517	6.17e-07	0.00681	GGCCACGCCCCCGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	23	+	17.431	6.17e-07	0.000705	TCCCCGCCCCCGCCA
SP2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	5	19	-	17.431	6.17e-07	0.000705	GCTCCGCCCTCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	37	51	+	17.431	6.17e-07	0.000705	GTCCCGCCTCGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	38	52	-	17.431	6.17e-07	0.000705	GCCCCGCCCTCCAGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	79	+	17.431	6.17e-07	0.000705	GCCCCGCCCTCCAGC
SP2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	96	110	+	17.431	6.17e-07	0.000705	GCTCCGCCCTCTCCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	67	78	+	17.3621	6.17e-07	0.0641	GCGACCACCGTA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	67	78	+	17.3621	6.17e-07	0.0641	GCGACCACCGTA
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	21	34	-	17.5517	6.18e-07	0.0201	GTCTCCGTGGCAAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	3	13	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	8	18	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	8	18	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	14	24	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	15	25	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	27	37	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	28	38	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	28	38	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	28	38	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	29	39	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	29	39	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	31	41	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	32	42	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	32	42	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	32	42	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	32	42	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	45	55	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	45	55	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	45	55	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	63	73	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	71	81	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	71	81	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	71	81	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	74	84	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	74	84	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	74	84	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	74	84	-	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	74	84	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	75	85	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	75	85	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	84	94	-	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	20	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	20	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	22	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	22	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	22	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	22	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	25	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	29	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	31	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	40	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	40	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	40	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	41	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	42	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	44	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	44	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	52	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	52	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	52	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	59	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	84	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	94	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	95	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	100	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	101	+	17.1538	6.19e-07	0.00119	GTCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	107	+	17.1538	6.19e-07	0.00119	GCCCCGCCTCC
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	44	57	+	17.5909	6.2e-07	0.15	GAGGTCAGGGGTCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	54	67	-	17.5	6.21e-07	0.0017	CGCCCTCCCCCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	54	67	-	17.5	6.21e-07	0.0017	CGCCCTCCCCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	18	31	+	17.5	6.21e-07	0.0017	CGCCCTCCCCCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	50	63	+	17.5	6.21e-07	0.0017	CCCCCGCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	50	63	+	17.5	6.21e-07	0.0017	CCCCCGCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	54	67	+	17.5	6.21e-07	0.0017	CGCCCTCCCCCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	54	67	+	17.5	6.21e-07	0.0017	CGCCCTCCCCCGCA
RFX3	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	+	17.6818	6.21e-07	0.0138	AGTTACCATGGCAATG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	4	24	-	17.3673	6.24e-07	0.00111	GGGGGAGGGGAGTAGGAGGAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	62	75	+	18.0345	6.24e-07	0.00681	TGCCCCGCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	62	75	+	18.0345	6.24e-07	0.00681	TGCCCCGCCCCCCT
CTCF	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	12	30	+	17.5738	6.25e-07	0.0237	CGGCCGCTGGGTGGCGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	16	30	-	17.4138	6.25e-07	0.000705	GGCCCGCCCCCTTCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	16	30	-	17.4138	6.25e-07	0.000705	GGCCCGCCCCCTTCA
RFX2	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	-	17.4286	6.31e-07	0.0164	CATTGCCATGGTAACT
Zfx	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	6	19	-	17.1212	6.32e-07	0.00522	CTCGCCTCGGCCTG
Zfx	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	96	109	+	17.1212	6.32e-07	0.00522	CTCGCCTCGGCCTG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	5	18	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	5	18	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	13	26	-	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	13	26	-	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	42	55	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	42	55	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	42	55	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	63	76	-	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	63	76	-	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	71	84	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	71	84	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	71	84	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	71	84	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	72	85	-	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	28	+	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	43	+	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	43	+	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	44	+	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	60	+	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	60	+	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	60	+	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	60	+	17.4808	6.32e-07	0.0017	GCCCCGCCCCCGGG
EGR1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	110	+	17.4808	6.32e-07	0.0017	GCCCCGCCTCCTCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	9	29	+	17.3469	6.33e-07	0.00113	AGGGGAGGGGAGAAGAGGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	16	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	37	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	37	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	37	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	39	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	39	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	39	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	39	+	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	16	30	-	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	21	35	-	17.3966	6.35e-07	0.000705	ATCCCGCCCCCGCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	21	35	-	17.3966	6.35e-07	0.000705	ATCCCGCCCCCGCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	26	40	-	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	26	40	-	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
SP2	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	59	+	17.3966	6.35e-07	0.000705	GCCCCGCCCCATGGC
SP2	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	56	70	-	17.3966	6.35e-07	0.000705	GCCCCGCCCCATGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	70	84	-	17.3966	6.35e-07	0.000705	GCCCCGCCTCCCCTA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	74	88	-	17.3966	6.35e-07	0.000705	GCCCCGCCCCTCTTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	74	88	-	17.3966	6.35e-07	0.000705	GCCCCGCCCCTCTTG
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	78	92	-	17.3966	6.35e-07	0.000705	CCCCCGCCCCGCCCC
RFX2	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	+	17.4143	6.36e-07	0.0164	AGTTACCATGGCAATG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	20	33	-	16.0303	6.36e-07	0.0366	TGCTGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	20	33	-	16.0303	6.36e-07	0.0366	TGCTGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	20	33	-	16.0303	6.36e-07	0.0366	TGCTGACGTCAGCG
BATF3	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	82	95	+	16.0303	6.36e-07	0.0366	TGCTGACGTCAGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	52	66	+	17.7414	6.37e-07	0.0155	CCCCGCCCCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	52	66	+	17.7414	6.37e-07	0.0155	CCCCGCCCCCGCCCT
EGR3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	49	63	-	17.7414	6.37e-07	0.0155	CCCCGCCCCCGCCCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	+	17.431	6.38e-07	0.0343	AGCCCCTGGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	+	17.431	6.38e-07	0.0343	AGCCCCTGGGGCA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	31	44	+	17.5152	6.42e-07	0.15	TGGGTCAAAGGGCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	39	59	-	17.3265	6.42e-07	0.00113	GGGGGAGTTGGGGGCGGGGGA
Rfx1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	56	69	-	17.5172	6.43e-07	0.0201	GGCGCCCTAGCAAC
Rfx1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	46	59	+	17.5172	6.43e-07	0.0201	GGCGCCCTAGCAAC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	65	76	+	17.5738	6.44e-07	0.0586	AAGCCGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	65	76	+	17.5738	6.44e-07	0.0586	AAGCCGGAAGTA
CTCF	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	52	70	+	17.5246	6.45e-07	0.0237	TCGCCGCCAGGTGGCAGGC
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	74	87	+	16.3191	6.48e-07	0.0881	AGGGTCAGAGTTCA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	74	87	+	16.3191	6.48e-07	0.0881	AGGGTCAGAGTTCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	33	47	-	17.3793	6.48e-07	0.000711	GCCCCGCCCCTGGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	33	47	-	17.3793	6.48e-07	0.000711	GCCCCGCCCCTGGGT
SP2	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	52	66	+	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	49	63	-	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	49	63	-	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	49	63	-	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	49	63	-	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	49	63	-	17.3793	6.48e-07	0.000711	CGCCCGCCCCCCGCG
Myod1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	3	15	-	16.0816	6.5e-07	0.0498	CGCAGCTGCCGCT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	112	+	16.0816	6.5e-07	0.0498	CGCAGCTGCCGCT
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	112	+	16.0816	6.5e-07	0.0498	CGCAGCTGCCGCT
Myod1	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	90	102	-	16.0816	6.5e-07	0.0498	AGCAGCTGCTCCT
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	24	44	+	17.3061	6.52e-07	0.00113	AAGGGAGGGAAAGAAGAAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	28	48	+	17.3061	6.52e-07	0.00113	GGGGGAACGAGGGAGGGGGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	61	81	+	17.3061	6.52e-07	0.00113	CGGGGAGAGGGAGGAGGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	91	111	+	17.3061	6.52e-07	0.00113	AAGGGAGGGAAAGAAGAAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	4	24	-	17.3061	6.52e-07	0.00113	AAGGGAGGGAAAGAAGAAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	35	55	-	17.3061	6.52e-07	0.00113	GGGGAAAGGGGGAGAGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	67	87	-	17.3061	6.52e-07	0.00113	GGGGGAACGAGGGAGGGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	67	87	-	17.3061	6.52e-07	0.00113	GGGGGAACGAGGGAGGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	67	87	-	17.3061	6.52e-07	0.00113	GGGGGAACGAGGGAGGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	67	87	-	17.3061	6.52e-07	0.00113	GGGGGAACGAGGGAGGGGGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	71	91	-	17.3061	6.52e-07	0.00113	AAGGGAGGGAAAGAAGAAGGG
Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	68	-	16.1098	6.52e-07	0.0847	GAGGTCAGAGTTCA
Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	24	37	+	16.1098	6.52e-07	0.0847	GAGGTCAGAGTTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	11	25	-	18.082	6.53e-07	0.02	GACCACGCCCCTAGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	11	25	-	18.082	6.53e-07	0.02	GACCACGCCCCTAGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	11	25	-	18.082	6.53e-07	0.02	GACCACGCCCCTAGA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	11	25	-	18.082	6.53e-07	0.02	GACCACGCCCCTAGA
Klf12	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	90	104	+	18.082	6.53e-07	0.02	GACCACGCCCCTAGA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	24	43	+	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	24	43	+	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	24	43	+	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	24	43	+	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	20	39	-	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	76	95	+	16.4312	6.54e-07	0.0165	CCCCACCCCCCCCGCCCCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	35	51	+	17.2545	6.55e-07	0.00297	CAGACCCCGCCCCCCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	27	43	-	17.2545	6.55e-07	0.00297	CAGACCCCGCCCCCCAG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	27	43	-	17.2545	6.55e-07	0.00297	CAGACCCCGCCCCCCAG
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	94	105	-	17.3448	6.55e-07	0.0641	GCGACCCCCAAA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	94	105	-	17.3448	6.55e-07	0.0641	GCGACCCCCAAA
ZBTB7B	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	10	21	+	17.3448	6.55e-07	0.0641	GCGACCCCCAAA
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	34	47	-	17.0909	6.57e-07	0.00528	CCGGGCTCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	34	47	-	17.0909	6.57e-07	0.00528	CCGGGCTCGGCCTC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	11	24	+	15.8	6.58e-07	0.101	AAGAAACCGAAACC
IRF8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	11	24	+	15.8	6.58e-07	0.101	AAGAAACCGAAACC
IRF8	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	56	69	+	15.8	6.58e-07	0.101	AAGAAACCGAAACC
IRF8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	46	59	-	15.8	6.58e-07	0.101	AAGAAACCGAAACC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	46	59	-	15.8	6.58e-07	0.101	AAGAAACCGAAACC
IRF8	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	91	104	-	15.8	6.58e-07	0.101	AAGAAACCGAAACC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.1.0	28	40	-	17.3182	6.58e-07	0.102	GTTAATGATTTAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:29261115..29261229,+__1962.1.0.0	28	40	-	17.3182	6.58e-07	0.102	GTTAATGATTTAC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	+	16.766	6.59e-07	0.0616	AGTGACTCATC
STAT3	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	67	77	+	16.2245	6.59e-07	0.0728	CTTCCGGGAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	22	42	-	17.2857	6.62e-07	0.00115	GGGAGAGCAGGGGGGGAAGGA
RXRG	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	44	57	+	16.2766	6.62e-07	0.0881	GAGGTCAGGGGTCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	17	27	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	17	27	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	10	20	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	10	20	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	12	22	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	29	39	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	22	32	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	34	44	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	34	44	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	34	44	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	34	44	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	39	49	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	32	42	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	32	42	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	34	44	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	34	44	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	40	50	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	40	50	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	47	57	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	58	68	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	61	71	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	61	71	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	66	76	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	66	76	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	66	76	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	83	93	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	83	93	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	83	93	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	83	93	+	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	77	87	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	77	87	-	18.0727	6.65e-07	0.00168	GCGCCTGCGCC
RFX3	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	-	17.5758	6.68e-07	0.0141	CATTGCCATGGTAACT
RFX3	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	+	17.5758	6.68e-07	0.0141	CGTTGCCATGACAGCG
SP2	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	17	+	17.3448	6.68e-07	0.000732	GCCCCGCCCTTCCGG
Rfx1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	12	25	+	17.431	6.69e-07	0.0202	GTTGCTATGGCAAC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	27	41	-	17.4697	6.71e-07	0.00965	ATCTCGCGAGACTTA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	27	41	-	17.4697	6.71e-07	0.00965	ATCTCGCGAGACTTA
ZBTB33	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	55	69	-	17.4697	6.71e-07	0.00965	GTCTCGCGGGGTCTC
ZBTB33	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	46	60	+	17.4697	6.71e-07	0.00965	GTCTCGCGGGGTCTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	74	88	+	17.4697	6.71e-07	0.00965	ATCTCGCGAGACTTA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	-	15.9636	6.71e-07	0.0286	CGCCCCAGGCA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	11	25	+	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	11	25	+	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	11	25	+	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	11	25	+	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	15	29	-	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	86	100	+	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	90	104	-	17.7576	6.72e-07	0.033	TCACTTTCGATTTCT
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	41	52	+	17.9344	6.72e-07	0.0343	ACCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	41	52	+	17.9344	6.72e-07	0.0343	ACCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	41	52	+	17.9344	6.72e-07	0.0343	ACCCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	41	52	+	17.9344	6.72e-07	0.0343	ACCCCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	74	-	17.9344	6.72e-07	0.0343	ACCCCGGAAGTG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	96	107	-	17.0152	6.74e-07	0.0514	CCGCGTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	96	107	-	17.0152	6.74e-07	0.0514	CCGCGTCCGCGC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	14	27	-	17.4038	6.76e-07	0.0017	GCTCCTCCCCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	101	+	17.4038	6.76e-07	0.0017	GCTCCTCCCCCTCC
NFYA	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	24	41	+	17.7073	6.76e-07	0.0128	TGACAGCTGATTGGCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	44	+	17.3276	6.78e-07	0.000741	GCCCCGCCCCGCCAC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	34	48	-	17.3276	6.78e-07	0.000741	GCCCCGCCCCGCCAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	72	89	-	5.98684	6.78e-07	0.00845	GGAAGTAAGGAAAGAGGA
USF2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	21	-	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	40	-	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	58	-	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	70	-	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	110	-	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	15	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	15	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	22	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	28	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	40	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	40	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	45	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	55	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	55	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	58	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	58	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	58	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	58	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	58	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	59	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	59	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	60	+	16.7143	6.79e-07	0.017	GCCACGTGACC
USF2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	85	+	16.7143	6.79e-07	0.017	GCCACGTGACC
RFX3	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	+	17.5455	6.8e-07	0.0141	CGTGGCCATGGCAACC
RFX5	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	+	17.069	6.81e-07	0.0166	GGTCGCCATGGGAACG
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	-	17.069	6.81e-07	0.0166	GGTCGCCATGGGAACG
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	-	17.069	6.81e-07	0.0166	GGTCGCCATGGGAACG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	22	42	+	17.2449	6.82e-07	0.00118	TGTGGAGGCGGGGAGAGAGGA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	4	21	+	17.6951	6.82e-07	0.0128	CCAGTTCCGATTGGTCCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	44	60	+	17.1636	6.83e-07	0.00297	GAAGCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	44	60	+	17.1636	6.83e-07	0.00297	GAAGCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	44	60	+	17.1636	6.83e-07	0.00297	GAAGCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	44	60	+	17.1636	6.83e-07	0.00297	GAAGCCCCGCCCCCGGG
EGR3	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	11	25	+	17.5862	6.84e-07	0.0155	CCACGCCCCCGCCTT
EGR3	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	90	104	-	17.5862	6.84e-07	0.0155	CCACGCCCCCGCCTT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	9	22	+	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	29	42	+	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	66	79	+	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	34	47	-	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	36	49	-	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	56	69	-	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	56	69	-	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	73	86	-	17.9138	6.85e-07	0.00681	GGCCCCGCCCCCCC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	68	78	-	16.7241	6.89e-07	0.0121	GGGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	68	78	-	16.7241	6.89e-07	0.0121	GGGCGGGAGGC
EGR1	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	69	82	-	17.3846	6.89e-07	0.0017	CGCCCTCCCCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	33	46	+	17.3846	6.89e-07	0.0017	CGCCCTCCCCCTCC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	+	17.4848	6.9e-07	0.021	GGGTGCCATGGCAACG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	+	17.4848	6.9e-07	0.021	GGGTGCCATGGCAACG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	+	17.4848	6.9e-07	0.021	GGGTGCCATGGCAACG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	55	+	17.3103	6.9e-07	0.000749	CTCCCGCCCCCTCGT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	55	+	17.3103	6.9e-07	0.000749	CTCCCGCCCCCTCGT
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	30	44	-	17.3103	6.9e-07	0.000749	GCCCCGCCCATCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	69	83	+	17.3103	6.9e-07	0.000749	GGCCCTCCCCCTGCC
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	85	+	17.3103	6.9e-07	0.000749	GCCCCGCCCATCTCC
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	33	46	+	16.5769	6.91e-07	0.0605	AGGATGTGACTCAT
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	29	42	-	16.5769	6.91e-07	0.0605	AGGATGTGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	73	86	+	16.5769	6.91e-07	0.0605	AGGATGTGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	69	82	-	16.5769	6.91e-07	0.0605	AGGATGTGACTCAT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	21	41	-	17.2245	6.92e-07	0.00119	AGAGGAGGGGGAGGGGAGGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	52	72	-	17.2245	6.92e-07	0.00119	AGAGGAGAGGGGGGTGGGGTG
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	16	31	+	16.3966	6.95e-07	0.231	TACCCACAAAGCAATG
SPIC	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	23	36	+	16.7887	6.96e-07	0.0444	GGAAACCGGAAGTA
SPIC	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	92	-	16.7887	6.96e-07	0.0444	GGAAACCGGAAGTA
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	23	33	+	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	32	-	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	32	-	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	37	-	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	78	88	+	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	78	88	+	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	83	93	+	16.7091	6.96e-07	0.0164	CCACTTCCGGG
ELK4	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	92	-	16.7091	6.96e-07	0.0164	CCACTTCCGGG
Klf12	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	68	82	+	18	6.97e-07	0.02	GGCCACGCCCCCAGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	+	17.2951	6.99e-07	0.0372	TGCCCGGGGGGCG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	61	72	-	16.9545	6.99e-07	0.0514	CAGCGTCCGCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	28	44	+	17.1091	7e-07	0.00297	CTCGCCCCGCCCCCGTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	28	44	+	17.1091	7e-07	0.00297	CTCGCCCCGCCCCCGTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	28	44	+	17.1091	7e-07	0.00297	CTCGCCCCGCCCCCGTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	28	44	+	17.1091	7e-07	0.00297	CTCGCCCCGCCCCCGTC
SP4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	49	65	+	17.1091	7e-07	0.00297	CCGGCCCCGCCCCCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	50	66	-	17.1091	7e-07	0.00297	CCGGCCCCGCCCCCAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	50	66	-	17.1091	7e-07	0.00297	CCGGCCCCGCCCCCAGC
Zfx	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	35	48	-	17.0455	7e-07	0.0054	GCCGCCCAGGCCTA
Zfx	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	67	80	+	17.0455	7e-07	0.0054	GCCGCCCAGGCCTA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	23	35	+	17.8333	7e-07	0.196	AGGGGATCCCCCG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	42	62	+	17.2041	7.02e-07	0.0012	GAAGGGGGAGGGAGGGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	53	73	-	17.2041	7.02e-07	0.0012	GAAGGGGGAGGGAGGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	63	83	-	17.2041	7.02e-07	0.0012	GAGTGAGGGAGGAAGGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	63	83	-	17.2041	7.02e-07	0.0012	GAGTGAGGGAGGAAGGGAAGG
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	60	74	-	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	60	74	-	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	60	74	-	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	60	74	-	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	78	92	+	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	78	92	+	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	78	92	+	16.9808	7.02e-07	0.0639	GGGTCACCCCGGCCC
ZBTB33	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	79	93	-	17.4242	7.03e-07	0.00965	TTCTCGCGGGATTTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	22	36	+	17.4242	7.03e-07	0.00965	TTCTCGCGGGATTTT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	22	36	+	17.4242	7.03e-07	0.00965	TTCTCGCGGGATTTT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	26	39	-	17.3654	7.03e-07	0.0017	ACTCCGCCCCCTCC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	7	17	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	7	17	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	7	17	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	7	17	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	37	47	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	37	47	+	15.1207	7.04e-07	0.0788	CTCTGTGGTTT
SPIC	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	74	87	-	16.7746	7.05e-07	0.0444	AAAATGAGGAAGAA
SPIC	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	74	87	-	16.7746	7.05e-07	0.0444	AAAATGAGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	74	87	-	16.7746	7.05e-07	0.0444	AAAATGAGGAAGAA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	61	75	-	17.3273	7.06e-07	0.174	TAAAAATGAAAGTGA
Rfx1	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	8	21	-	17.3621	7.1e-07	0.0208	GTGCCCCTGGCAAC
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	29	42	-	16.5172	7.1e-07	0.0732	TTTCCAGGAAGAGG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	55	68	-	16.5172	7.1e-07	0.0732	TTTCCAGGAAGAGG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	41	52	+	17.7818	7.1e-07	0.0421	ACCCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	41	52	+	17.7818	7.1e-07	0.0421	ACCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	41	52	+	17.7818	7.1e-07	0.0421	ACCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	41	52	+	17.7818	7.1e-07	0.0421	ACCCCGGAAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	74	-	17.7818	7.1e-07	0.0421	ACCCCGGAAGTG
CTCF	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	10	28	+	17.377	7.11e-07	0.0239	GGGCCAGAAGGGGGCGTCC
CTCF	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	87	105	-	17.377	7.11e-07	0.0239	GGGCCAGAAGGGGGCGTCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	13	23	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	20	30	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	20	30	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	27	37	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	57	67	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	61	71	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	62	72	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	62	72	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	104	114	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	104	114	-	17.0962	7.12e-07	0.00133	GCCCCACCCCC
SP1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	88	+	17.0962	7.12e-07	0.00133	GCCCCACCCCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	32	43	+	15.8909	7.14e-07	0.054	TGCCCGAGGGCA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	69	-	16.7606	7.15e-07	0.0444	TGAAAGAGGAAGTC
CENPB	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	19	33	+	17.3269	7.16e-07	0.319	CCCGCCTCGGGCGAA
CENPB	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	82	96	-	17.3269	7.16e-07	0.319	CCCGCCTCGGGCGAA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	16	26	-	17.2931	7.16e-07	0.00244	GCCACACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	29	39	+	17.2931	7.16e-07	0.00244	GCCACACCCCC
SP4	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	27	43	+	17.0545	7.17e-07	0.00297	CCGGCCCCGCCCCCCGC
SP4	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	72	88	-	17.0545	7.17e-07	0.00297	CCGGCCCCGCCCCCCGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	26	39	-	17.3462	7.18e-07	0.0017	ACGCCGCCCCCTCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	13	30	-	5.84211	7.2e-07	0.00845	GAGAGGAAGTGAGGAAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	3	17	-	17.2586	7.2e-07	0.000775	GCTCCGCCCCCACCG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	5	22	-	5.82895	7.22e-07	0.00845	GTAAGTGAGGAAGGAGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	93	110	+	5.82895	7.22e-07	0.00845	GTAAGTGAGGAAGGAGGG
ZNF143	WILDTYPE__mrna.noflip.NA__chr13:33112927..33113041,-__1243.1.0.0	53	68	+	16.3103	7.23e-07	0.231	TTCCCACAATGCCTGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	55	71	+	17.0364	7.23e-07	0.00297	GCAGCCCCGCCCCCGTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	55	71	+	17.0364	7.23e-07	0.00297	GCAGCCCCGCCCCCGTT
SPIC	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	24	37	+	16.7465	7.23e-07	0.0444	AGAAAGCGGAAGAA
SPIC	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	78	91	-	16.7465	7.23e-07	0.0444	AGAAAGCGGAAGAA
RFX4	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	-	17.4242	7.24e-07	0.021	GGTTGCCATGGCCACG
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	26	40	-	17.3939	7.24e-07	0.00965	ATCTCGCGAGAATTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	75	89	+	17.3939	7.24e-07	0.00965	ATCTCGCGAGAATTC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	10	27	+	5.80263	7.27e-07	0.00845	GGAGAGAAGGGAGGAGGT
Vdr	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	27	42	-	16.6885	7.28e-07	0.286	GGGGTCAGCCAGTTCA
Vdr	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	27	42	-	16.6885	7.28e-07	0.286	GGGGTCAGCCAGTTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	14	28	+	17.9344	7.28e-07	0.02	GGCCACACCCTCTTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	14	28	+	17.9344	7.28e-07	0.02	GGCCACACCCTCTTC
Zfx	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	33	46	+	17.0152	7.3e-07	0.0054	GCCGCCCCGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	35	48	-	17.0152	7.3e-07	0.0054	CGCGCCCCGGCCTA
Zfx	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	44	57	-	17.0152	7.3e-07	0.0054	GCCGCCCCGGCCTA
Zfx	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	58	71	+	17.0152	7.3e-07	0.0054	GCCGCCCCGGCCTA
Zfx	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	69	82	-	17.0152	7.3e-07	0.0054	GCCGCCCCGGCCTA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	-	17.4091	7.31e-07	0.021	CGTTGCCATGGCACCC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	-	17.4091	7.31e-07	0.021	CGTTGCCATGGCACCC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	-	17.4091	7.31e-07	0.021	CGTTGCCATGGCACCC
RXRB	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	44	57	+	15.2727	7.32e-07	0.0818	GAGGTCAGGGGTCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	33	47	-	17.2414	7.33e-07	0.000784	GCCCCGCCCCTGACT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	33	47	-	17.2414	7.33e-07	0.000784	GCCCCGCCCCTGACT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	33	47	-	17.2414	7.33e-07	0.000784	GCCCCGCCCCTGACT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	33	47	-	17.2414	7.33e-07	0.000784	GCCCCGCCCCTGACT
SP2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	82	+	17.2414	7.33e-07	0.000784	GCCCCGCCCCTGACT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	19	39	+	17.1429	7.34e-07	0.00124	AGAGGAGAAGGAGGAGGAGCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	27	47	-	17.1429	7.34e-07	0.00124	GGAGCAGGAAGGGGCGAGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	27	47	-	17.1429	7.34e-07	0.00124	GGAGCAGGAAGGGGCGAGGCA
IRF2	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	69	86	-	17.4495	7.34e-07	0.162	GGAAAGTGAAAGGAGGCT
POU2F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	32	44	-	16.9483	7.35e-07	0.232	CTCATTTGCATTT
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	45	59	-	17.6364	7.39e-07	0.033	TCGCTTTCAGTTCCC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	28	-	16.5577	7.39e-07	0.0605	ACGAGATGACTCAT
ELF4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	25	36	+	17.918	7.41e-07	0.0343	AAACCGGAAGTA
ELF4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	90	-	17.918	7.41e-07	0.0343	AAACCGGAAGTA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	68	85	-	5.72368	7.41e-07	0.00845	GAAGAGAAGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	68	85	-	5.72368	7.41e-07	0.00845	GAGAGTGAGGGAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	68	85	-	5.72368	7.41e-07	0.00845	GAGAGTGAGGGAGGAAGG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	14	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	14	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	14	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	14	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	15	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	15	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	15	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	15	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	17	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	20	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	22	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	23	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	29	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	29	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	29	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	29	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	30	+	15.9837	7.41e-07	0.00272	ACCACGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	32	+	15.9837	7.41e-07	0.00272	ACCACGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	32	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	36	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	38	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	40	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	41	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	41	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	41	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	41	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	42	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	43	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	45	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	45	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	45	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	54	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	54	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	54	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	56	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	56	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	57	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	57	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	57	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	57	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	57	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	58	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	58	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	58	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	59	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	61	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	61	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	61	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	61	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	62	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	64	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	65	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	66	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	66	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	68	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	68	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	68	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	68	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	69	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	73	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	74	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	75	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	77	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	78	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	81	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	81	+	15.9837	7.41e-07	0.00272	ACCACGCCCAC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	82	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	84	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	87	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	97	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	106	+	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	1	11	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	1	11	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	3	13	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	3	13	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	5	15	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	6	16	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	8	18	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	8	18	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	9	19	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	11	21	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	15	25	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	16	26	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	16	26	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	17	27	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	17	27	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	17	27	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	17	27	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	18	28	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	19	29	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	22	32	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	24	34	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	24	34	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	27	37	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	27	37	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	27	37	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	27	37	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	28	38	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	28	38	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	29	39	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	30	40	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	30	40	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	31	41	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	31	41	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	32	42	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	32	42	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	32	42	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	32	42	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	33	43	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	33	43	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	34	44	-	15.9837	7.41e-07	0.00272	ACCACGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	36	46	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	38	48	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	40	50	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	41	51	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	42	52	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	42	52	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	47	57	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	47	57	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	50	60	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	51	61	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	53	63	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	53	63	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	54	64	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	56	66	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	56	66	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	56	66	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	57	67	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	57	67	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	58	68	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	58	68	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	58	68	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	61	71	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	66	76	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	66	76	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	66	76	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	67	77	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	67	77	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	67	77	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	67	77	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	74	84	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	75	85	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	75	85	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	83	93	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	92	102	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	100	110	-	15.9837	7.41e-07	0.00272	GCCCCGCCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	40	54	-	17.3966	7.44e-07	0.0155	TTCCGCCCCCGCGTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	40	54	-	17.3966	7.44e-07	0.0155	TTCCGCCCCCGCGTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	40	54	-	17.3966	7.44e-07	0.0155	TTCCGCCCCCGCGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	40	54	-	17.3966	7.44e-07	0.0155	TTCCGCCCCCGCGTC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	29	+	17.2241	7.44e-07	0.000793	GCTCCGCCCCCAGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	28	42	-	17.2241	7.44e-07	0.000793	GCCCCGCCCCAGTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	28	42	-	17.2241	7.44e-07	0.000793	GCCCCGCCCCAGTCC
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	43	-	17.1915	7.45e-07	0.227	TATGGTGACGTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	+	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	+	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	+	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	-	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	+	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	+	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	-	16.5636	7.46e-07	0.0322	GGTGACTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	-	16.5636	7.46e-07	0.0322	GGTGACTCAGC
Myb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.0.0	47	56	+	15.9344	7.46e-07	0.143	CCAACTGCCA
Myb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	47	56	+	15.9344	7.46e-07	0.143	CCAACTGCCA
Myb	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	53	62	+	15.9344	7.46e-07	0.143	CCAACTGCCA
ETV5	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	17.2857	7.46e-07	0.042	ACCGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	16.3654	7.46e-07	0.0363	AGCGGAAGTG
FLI1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.9787	7.46e-07	0.0555	ACCGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.0545	7.46e-07	0.0511	ACCGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.0769	7.46e-07	0.058	ACCGGAAGTG
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	61	70	-	15.9344	7.46e-07	0.143	CCAACTGCCA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	61	70	-	15.9344	7.46e-07	0.143	CCAACTGCCA
ETS1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	16.2931	7.46e-07	0.053	ACCGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	17.766	7.46e-07	0.0372	ACCGGAAGTG
Ascl2	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	+	16.9143	7.46e-07	0.14	AGCAGCTGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	-	16.9143	7.46e-07	0.14	AGCAGCTGCT
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	18.2115	7.46e-07	0.0301	GTCACGTGAC
Tcf12	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	82	92	-	15.8571	7.46e-07	0.0832	AACAGCTGCTG
ETV5	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	14.2	7.46e-07	0.0501	ACCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.8592	7.46e-07	0.0449	ACCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	17.2857	7.46e-07	0.042	ACCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.2586	7.46e-07	0.0454	ACCGGAAGTG
ETV6	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	16.3654	7.46e-07	0.0363	AGCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	16.3654	7.46e-07	0.0363	AGCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.9787	7.46e-07	0.0555	ACCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.0545	7.46e-07	0.0511	ACCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.0769	7.46e-07	0.058	ACCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	16.2931	7.46e-07	0.053	ACCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	17.766	7.46e-07	0.0372	ACCGGAAGTG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	+	17.3448	7.47e-07	0.0343	TGCCCGGGGGGCG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	32	49	-	5.69737	7.47e-07	0.00845	GGAGAGAGGGAGGGAAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	66	83	+	5.69737	7.47e-07	0.00845	GGAGAGAGGGAGGGAAGG
SP4	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	11	27	+	16.9636	7.47e-07	0.00297	TTGACCACGCCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	23	39	+	16.9636	7.47e-07	0.00297	GATGCCCCGCCCACCCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	11	27	-	16.9636	7.47e-07	0.00297	CCAGCCCCGCCCCTCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	11	27	-	16.9636	7.47e-07	0.00297	CCAGCCCCGCCCCTCCT
SP4	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	58	74	+	16.9636	7.47e-07	0.00297	ATGGCCCCGCCCCTCAC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	45	58	+	16.6727	7.47e-07	0.0486	CAAATGAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	45	58	+	16.6727	7.47e-07	0.0486	CAAATGAGGAAGTT
SPI1	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	57	70	-	16.6727	7.47e-07	0.0486	CAAATGAGGAAGTT
Myod1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	28	+	16.0204	7.48e-07	0.0498	CGCAGCTGTTACC
Myod1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	87	99	-	16.0204	7.48e-07	0.0498	CGCAGCTGTTACC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	+	17.3788	7.48e-07	0.021	GGTTCCCATGGCGACG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	+	17.3788	7.48e-07	0.021	GGTTCCCATGGCGACG
EGR1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	13	26	-	17.2885	7.49e-07	0.0017	GCCACGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	25	38	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	25	38	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	29	42	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	29	42	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	29	42	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	29	42	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	42	55	-	17.2885	7.49e-07	0.0017	GCCACGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	50	63	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	50	63	-	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	48	+	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	48	+	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	58	+	17.2885	7.49e-07	0.0017	CTCCCGCCCCCACT
EGR1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	65	+	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	73	+	17.2885	7.49e-07	0.0017	GCCACGCCCCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	90	+	17.2885	7.49e-07	0.0017	GCCCCGCCCCCAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	102	+	17.2885	7.49e-07	0.0017	GCCACGCCCCCTCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	12	26	-	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	12	26	-	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	44	58	+	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	44	58	+	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	57	71	-	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	89	103	+	17.6212	7.5e-07	0.033	TGGGTTTCGGTTTCT
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	-	17.0857	7.51e-07	0.0178	CGTTGCCATGGCACCC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	-	17.0857	7.51e-07	0.0178	CGTTGCCATGGCACCC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	-	17.0857	7.51e-07	0.0178	CGTTGCCATGGCACCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	4	14	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	4	14	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	4	14	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	4	14	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	4	14	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	28	38	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	24	34	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	35	45	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	35	45	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	35	45	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	35	45	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	44	54	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	44	54	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	44	54	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	44	54	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	57	67	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	57	67	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	47	57	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	48	58	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	52	62	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	52	62	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	52	62	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	52	62	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	52	62	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	61	71	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	64	74	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	64	74	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	70	80	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	81	91	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	81	91	+	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	77	87	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	77	87	-	17.0656	7.51e-07	0.00845	CCGGAAGTGAC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	1	10	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	14	23	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	16	25	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	21	30	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	21	30	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	21	30	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	21	30	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	21	30	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	23	32	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	23	32	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	23	32	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	23	32	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	43	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	43	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	27	36	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	27	36	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	27	36	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	27	36	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	28	37	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	31	40	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	31	40	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	31	40	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	39	48	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	60	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	60	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	60	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	65	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	50	59	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	51	60	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	51	60	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	51	60	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	51	60	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	51	60	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	52	61	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	52	61	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	52	61	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	52	61	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	71	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	71	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	56	65	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	58	67	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	76	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	62	71	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	63	72	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	63	72	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	87	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	99	+	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	105	114	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	105	114	-	16.6735	7.52e-07	0.00127	GCCCCACCCC
SP4	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	23	39	+	16.9455	7.53e-07	0.00297	CCTGCCCCGCCCCCTCC
YY1	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	3	14	+	17.0962	7.56e-07	0.0108	CAAGATGGCGAC
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	80	91	-	17.0962	7.56e-07	0.0108	CAAGATGGCGAC
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	80	91	-	17.0962	7.56e-07	0.0108	CAAGATGGCGAC
YY1	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	101	112	-	17.0962	7.56e-07	0.0108	CAAGATGGCGAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	18	32	-	17.2069	7.56e-07	0.0008	GCCCCACCCCTTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	18	32	-	17.2069	7.56e-07	0.0008	GCCCCACCCCTTCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	18	32	-	17.2069	7.56e-07	0.0008	GCCCCACCCCTTCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	18	32	-	17.2069	7.56e-07	0.0008	GCCCCACCCCTTCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	47	+	17.2069	7.56e-07	0.0008	GCCCCTCCCCTCCCT
Myog	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	15	25	-	15.6939	7.56e-07	0.0399	AACAGCTGCGG
Myog	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	100	+	15.6939	7.56e-07	0.0399	AACAGCTGCGG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	5	15	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	5	15	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	5	15	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	5	15	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	13	23	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	13	23	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	13	23	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	13	23	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	11	21	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	23	33	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	23	33	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	24	34	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	19	29	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	19	29	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	19	29	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	19	29	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	30	40	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	32	42	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	33	43	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	33	43	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	33	43	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	33	43	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	33	43	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	24	34	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	25	35	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	29	39	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	29	39	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	29	39	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	29	39	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	41	51	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	35	45	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	35	45	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	40	50	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	40	50	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	54	64	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	54	64	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	65	75	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	67	77	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	64	74	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	76	86	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	72	82	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	75	85	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	75	85	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	86	96	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	82	92	-	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	94	104	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	94	104	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	94	104	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	94	104	+	18.0545	7.58e-07	0.00168	GCGCGTGCGCG
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	71	+	16	7.58e-07	0.0498	GGCAGCTGTTGCT
NFYA	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	39	56	-	17.5488	7.59e-07	0.013	CGACCGCTGATTGGCTGT
NFYA	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	74	91	-	17.5488	7.59e-07	0.013	CGACCGCTGATTGGCTGT
NFYA	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	24	41	+	17.5488	7.59e-07	0.013	CGACCGCTGATTGGCTGT
NFYA	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	59	76	+	17.5488	7.59e-07	0.013	CGACCGCTGATTGGCTGT
SP4	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	45	61	+	16.9273	7.6e-07	0.00297	CCGGCCCCGCCCCCGCT
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	8	21	+	15.1636	7.61e-07	0.0818	GGGGTGAGAGGTCA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	8	21	+	15.1636	7.61e-07	0.0818	GGGGTGAGAGGTCA
E2F8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	88	99	+	17.3902	7.64e-07	0.217	TTTCCCGCCCAA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	24	37	-	17.2692	7.65e-07	0.0017	GTCCCGCCCCCTCG
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	45	58	+	17.2692	7.65e-07	0.0017	CCTCCGCCGCCGCC
SP4	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	12	28	-	16.9091	7.66e-07	0.00297	CAGGCCCCGCCTCCTCA
SP4	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	87	103	+	16.9091	7.66e-07	0.00297	CAGGCCCCGCCTCCTCA
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	+	17.3485	7.66e-07	0.021	CGTTCCCATGGCGACC
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	+	17.3485	7.66e-07	0.021	CGTTCCCATGGCGACC
RFX4	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	-	17.3485	7.66e-07	0.021	CGTTCCCATGGCGACC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	19	39	+	17.0816	7.67e-07	0.00129	GGGGGATGGTGGTGGAGGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	19	39	+	17.0816	7.67e-07	0.00129	GGGGGATGGTGGTGGAGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	19	39	+	17.0816	7.67e-07	0.00129	GGGGGATGGTGGTGGAGGGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	47	67	+	17.0816	7.67e-07	0.00129	GGAAGAAGAAAGGGAGGGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	90	110	+	17.0816	7.67e-07	0.00129	GAAGGCGGAAGTAGGAGAGGA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	23	35	-	17.7424	7.67e-07	0.196	CGGGGGATCCCCT
SP2	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	59	+	17.1897	7.68e-07	0.000811	TCCCCGCCCTCCCCG
SP2	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	56	70	-	17.1897	7.68e-07	0.000811	TCCCCGCCCTCCCCG
IRF1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	4	24	-	17.5161	7.7e-07	0.0412	ATTTTCTTTCGTTTTCATTAT
IRF1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	75	95	-	17.5161	7.7e-07	0.0412	ATTTTCTTTCGTTTTCATTAT
IRF1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	20	40	+	17.5161	7.7e-07	0.0412	ATTTTCTTTCGTTTTCATTAT
IRF1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	91	111	+	17.5161	7.7e-07	0.0412	ATTTTCTTTCGTTTTCATTAT
SP4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	58	74	-	16.8909	7.72e-07	0.00297	CGGGCCACGCCCCCGCC
RFX3	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	+	17.3485	7.74e-07	0.0157	CGTTGCCCTAGCAACC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	1	14	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	4	17	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	7	20	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	10	23	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	12	25	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	12	25	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	13	26	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	15	28	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	15	28	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	16	29	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	18	31	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	19	32	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	27	40	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	42	55	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	45	58	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	53	66	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	53	66	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	53	66	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	53	66	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	56	69	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	56	69	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	56	69	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	56	69	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	61	74	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	61	74	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	65	78	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	68	81	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	68	81	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	71	84	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	71	84	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	71	84	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	74	87	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	77	90	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	80	93	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	94	107	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	97	110	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	100	113	-	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	2	15	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	5	18	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	8	21	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	48	61	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	51	64	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	54	67	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	57	70	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	57	70	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	57	70	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	60	73	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	60	73	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	60	73	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	63	76	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	66	79	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	75	88	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	83	96	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	86	99	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	87	100	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	89	102	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	90	103	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	90	103	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	92	105	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	93	106	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	95	108	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	98	111	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	101	114	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	101	114	+	17.25	7.78e-07	0.0017	CCGCCGCCGCCGCC
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	28	-	16.5385	7.78e-07	0.0605	ATGAGATGACTCAT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	26	46	+	17.0612	7.78e-07	0.00129	GAGGGAGGTGGGGCTGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	26	46	+	17.0612	7.78e-07	0.00129	GAGGGAGGTGGGGCTGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	38	58	+	17.0612	7.78e-07	0.00129	GAAGGAAGGAAGGAAGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	38	58	+	17.0612	7.78e-07	0.00129	GAAGGAAGGAAGGAAGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	48	68	-	17.0612	7.78e-07	0.00129	GAAGCAGGAGAGAAAAAAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	76	96	-	17.0612	7.78e-07	0.00129	TGAGGAAGGGGAGCAAGGGAG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	42	-	16.3621	7.78e-07	0.129	CGCCACGTGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	42	-	16.3621	7.78e-07	0.129	CGCCACGTGCCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	42	-	16.3621	7.78e-07	0.129	CGCCACGTGCCG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	41	55	-	17.3429	7.79e-07	0.0537	GCCACCCCGCTGCGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	95	109	-	17.3429	7.79e-07	0.0537	GCCACCCCGCTGCGA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	22	41	+	16.0275	7.8e-07	0.0168	CACCCCACCCCCCCCCCCCC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	40	50	-	16.1091	7.83e-07	0.102	AGGGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	40	50	-	16.1091	7.83e-07	0.102	AGGGTAGCAGC
Spz1	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	75	85	+	16.1091	7.83e-07	0.102	AGGGTAGCAGC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	58	76	-	17.2295	7.83e-07	0.0243	CCGCCTGCAGAGGGCGGGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	58	76	-	17.2295	7.83e-07	0.0243	CCGCCTGCAGAGGGCGGGC
SP2	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	10	24	+	17.1724	7.83e-07	0.000819	ACCCCGCCTCCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	6	20	-	17.1724	7.83e-07	0.000819	ACCCCGCCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	6	20	-	17.1724	7.83e-07	0.000819	ACCCCGCCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	70	84	-	17.1724	7.83e-07	0.000819	GTCCCGCCCCCAAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	70	84	-	17.1724	7.83e-07	0.000819	GTCCCGCCCCCAAGC
SP2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	95	109	+	17.1724	7.83e-07	0.000819	ACCCCGCCTCCCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	91	105	-	17.1724	7.83e-07	0.000819	ACCCCGCCTCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	16	32	+	16.8545	7.84e-07	0.00297	CCGGCCCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	16	32	+	16.8545	7.84e-07	0.00297	CCGGCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	16	32	+	16.8545	7.84e-07	0.00297	CCGGCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	16	32	+	16.8545	7.84e-07	0.00297	CCGGCCCCGCCCCCGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	63	79	-	16.8545	7.84e-07	0.00297	CCGGCCCCGCCCCCGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	53	73	+	17.0408	7.9e-07	0.0013	GAAAGAGGAGGAGAGGAGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	87	107	+	17.0408	7.9e-07	0.0013	GAAAGAGGAGGAGAGGAGGAG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	27	42	+	17.1091	7.9e-07	0.0258	CCCCGCCCACCCACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	27	42	+	17.1091	7.9e-07	0.0258	CCCCGCCCACCCACCG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	55	69	-	17.4342	7.92e-07	0.0599	TAAATGACTCAGCAG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	5	19	-	17.5303	7.97e-07	0.033	TTAGTTTCATTTCTC
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	5	19	-	17.5303	7.97e-07	0.033	TTAGTTTCATTTCTC
SRF	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	23	38	+	16.8361	8.01e-07	0.0517	TTACCTTATAAGGGAA
SRF	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	28	43	+	16.8361	8.01e-07	0.0517	TTACCTTATAAGGGAA
SRF	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	23	38	-	16.8361	8.01e-07	0.0517	TTCCCTTATAAGGTAA
SRF	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	28	43	-	16.8361	8.01e-07	0.0517	TTCCCTTATAAGGTAA
SRF	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	72	87	+	16.8361	8.01e-07	0.0517	TTCCCTTATAAGGTAA
SRF	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	77	92	+	16.8361	8.01e-07	0.0517	TTCCCTTATAAGGTAA
SRF	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	72	87	-	16.8361	8.01e-07	0.0517	TTACCTTATAAGGGAA
SRF	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	77	92	-	16.8361	8.01e-07	0.0517	TTACCTTATAAGGGAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	15	35	+	17.0204	8.01e-07	0.0013	GGAGAAAGGAAGGGAGGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	21	41	+	17.0204	8.01e-07	0.0013	GGGGCTGGGAGGGGAGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	21	41	+	17.0204	8.01e-07	0.0013	GGGGCTGGGAGGGGAGGGGGC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	78	98	+	17.0204	8.01e-07	0.0013	GGAGGTGGCGGGGGCGGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	82	102	+	17.0204	8.01e-07	0.0013	GGAGAAAGGAAGGGAGGGAAA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	13	33	-	17.0204	8.01e-07	0.0013	GGAGAAAGGAAGGGAGGGAAA
ZNF263	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	17	37	-	17.0204	8.01e-07	0.0013	GGAGGTGGCGGGGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	48	68	-	17.0204	8.01e-07	0.0013	GAAGCAGGAGAGAAAAAAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	80	100	-	17.0204	8.01e-07	0.0013	GGAGAAAGGAAGGGAGGGAAA
ETV2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	26	36	+	17.0984	8.03e-07	0.118	AACCGGAAGTA
ETV2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	45	-	17.0984	8.03e-07	0.118	AACCGGAAGTA
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	70	80	+	17.0984	8.03e-07	0.118	AACCGGAAGTA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	70	80	+	17.0984	8.03e-07	0.118	AACCGGAAGTA
ETV2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	89	-	17.0984	8.03e-07	0.118	AACCGGAAGTA
RFX4	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	+	17.2879	8.03e-07	0.0213	CGTTGCCCTAGCAACC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	17	31	+	17.1379	8.03e-07	0.000832	GTCCCGCCCCGCCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	44	+	17.1379	8.03e-07	0.000832	GCCCCGCCCCCTTTA
SP2	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	30	44	-	17.1379	8.03e-07	0.000832	GCCCCGCCCACCCTG
SP2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	68	+	17.1379	8.03e-07	0.000832	GCCCCGCCCCCGTTT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	45	59	-	17.1379	8.03e-07	0.000832	GCCCCGCCCACCCTG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	45	59	-	17.1379	8.03e-07	0.000832	GCCCCGCCCACCCTG
SP2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	47	61	-	17.1379	8.03e-07	0.000832	GCCCCGCCCCCGTTT
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	-	16.7586	8.03e-07	0.0181	CGTCACCATGGCGACC
RFX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	-	16.7586	8.03e-07	0.0181	CGTCACCATGGCGACC
RFX5	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	+	16.7586	8.03e-07	0.0181	CGTCACCATGGCGACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	23	39	+	16.8	8.04e-07	0.00297	GACGCCCCGCCCACCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	5	15	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	5	15	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	5	15	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	5	15	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	7	17	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	10	20	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	12	22	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	43	53	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	43	53	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	43	53	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	43	53	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	53	63	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	53	63	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	84	94	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	99	109	-	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	16	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	16	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	16	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	16	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	16	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	20	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	20	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	25	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	31	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	62	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	62	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	85	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	103	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	110	+	17.0769	8.05e-07	0.00139	GCTCCGCCCCC
RXRB	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	20	33	+	15.0545	8.05e-07	0.0818	GGGGTCATAGTTCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	43	59	+	15.6885	8.09e-07	0.124	AGGTCAGGCCAAGGTCT
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	43	59	+	15.6885	8.09e-07	0.124	AGGTCAGGCCAAGGTCT
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	43	59	+	15.6885	8.09e-07	0.124	AGGTCAGGCCAAGGTCT
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	43	59	+	15.6885	8.09e-07	0.124	AGGTCAGGCCAAGGTCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	17	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	17	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	21	31	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	21	31	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	13	23	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	13	23	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	13	23	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	26	36	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	32	42	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	32	42	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	32	42	-	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	73	83	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	89	+	17.1207	8.1e-07	0.0026	GACCCGCCCCC
EGR1	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	23	+	17.1923	8.1e-07	0.00177	TCCCCGCCCCCGGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	3	19	+	16.7818	8.1e-07	0.00297	CCTGCCACGCCCCCCCC
SP4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	33	49	+	16.7818	8.1e-07	0.00297	CCTGCCACGCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	39	55	+	16.7818	8.1e-07	0.00297	CCTGCCACGCCCCCCCC
SP4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	60	76	-	16.7818	8.1e-07	0.00297	CCTGCCACGCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	66	82	-	16.7818	8.1e-07	0.00297	CCTGCCACGCCCCCCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	6	26	+	17	8.13e-07	0.00132	GAGGGGGGAGGAGGAGGGAGG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	21	40	+	15.9266	8.14e-07	0.0168	CCACCCCACCCCCCCCCCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	14	33	-	15.9266	8.14e-07	0.0168	CCCCCACCCCCACCCCCACC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	20	39	-	15.9266	8.14e-07	0.0168	CCCCCACCCCCACCCCCACC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	26	45	-	15.9266	8.14e-07	0.0168	CCCCCACCCCCACCCCCACC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	32	51	-	15.9266	8.14e-07	0.0168	CCCCCACCCCCACCCCCACC
ATF7	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	+	18.1286	8.15e-07	0.0669	CGGTGACGTCACCG
ATF7	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	-	18.1286	8.15e-07	0.0669	CGGTGACGTCACCG
ATF7	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	+	18.1286	8.15e-07	0.0669	CGGTGACGTCACCG
ATF7	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	-	18.1286	8.15e-07	0.0669	CGGTGACGTCACCG
TBP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	50	64	+	14.75	8.15e-07	0.0437	GTATAAAAACCCCTG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	43	+	15.9174	8.17e-07	0.0168	CCCCCCCCCCCCCGCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	4	20	-	16.7636	8.17e-07	0.00297	CTGGCTCCGCCCCCACC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	17	31	-	17.1897	8.18e-07	0.0155	CTCCGCCCCCGCTCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	83	97	+	17.1897	8.18e-07	0.0155	CTCCGCCCCCGCTCC
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	67	80	+	15.7234	8.18e-07	0.0881	GGGGTGAAGGGTCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	13	27	-	17.1207	8.18e-07	0.000842	GCCCCGCCCCGGCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	13	27	-	17.1207	8.18e-07	0.000842	GCCCCGCCCCGGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	13	27	-	17.1207	8.18e-07	0.000842	GCCCCGCCCCGGCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	50	+	17.1207	8.18e-07	0.000842	GCCCCGCCCCGGCCT
SP2	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	65	79	-	17.1207	8.18e-07	0.000842	GCCCCGCCCCGGCCT
YY2	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	11	21	-	16.0909	8.19e-07	0.223	GACCGCCATTT
YY2	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	94	104	+	16.0909	8.19e-07	0.223	GACCGCCATTT
KLF14	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	25	38	+	17.6724	8.2e-07	0.00805	TGCCCCGCCCCCTC
NFIL3	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	74	84	-	15.9798	8.2e-07	0.779	TTATGTAACAT
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	28	41	-	18.1143	8.26e-07	0.0669	TGGTGACGTCATCA
PPARG	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	60	79	+	16.8	8.26e-07	0.358	GTACGTCATTGTGACTCAGA
PPARG	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	69	-	16.8	8.26e-07	0.358	GTACGTCATTGTGACTCAGA
Nkx2-5(var.2)	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	103	113	-	15.9818	8.27e-07	0.451	GGCCACTCAAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	81	91	+	16.2245	8.27e-07	0.0541	GGATGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	81	91	+	16.4909	8.27e-07	0.051	GGATGACTCAT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	37	50	+	16.9242	8.29e-07	0.00573	CGGGGCGCGGCCTA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	37	50	+	16.9242	8.29e-07	0.00573	CGGGGCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	37	50	+	16.9242	8.29e-07	0.00573	CGGGGCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	37	50	+	16.9242	8.29e-07	0.00573	CGGGGCGCGGCCTA
Myod1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	22	+	15.9388	8.29e-07	0.0498	CGCAGCTGCCACC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	93	105	-	15.9388	8.29e-07	0.0498	CGCAGCTGCCACC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	34	50	-	16.7273	8.31e-07	0.00297	CAGGCCCCGCCCCTGAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	34	50	-	16.7273	8.31e-07	0.00297	CAGGCCCCGCCCCTGAC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	34	50	-	16.7273	8.31e-07	0.00297	CAGGCCCCGCCCCTGAC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	34	50	-	16.7273	8.31e-07	0.00297	CAGGCCCCGCCCCTGAC
SP4	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	65	81	+	16.7273	8.31e-07	0.00297	CAGGCCCCGCCCCTGAC
SP2	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	2	16	-	17.1034	8.33e-07	0.000846	GCCCCGCCCCCAGAG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	31	+	17.1034	8.33e-07	0.000846	GGCCCACCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	31	+	17.1034	8.33e-07	0.000846	GGCCCACCCCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	31	+	17.1034	8.33e-07	0.000846	GGCCCACCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	31	45	-	17.1034	8.33e-07	0.000846	GCCCCGCCCCGCTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	31	45	-	17.1034	8.33e-07	0.000846	GCCCCGCCCCGCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	69	+	17.1034	8.33e-07	0.000846	GCTCCGCCCACCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	69	+	17.1034	8.33e-07	0.000846	GCTCCGCCCACCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	46	60	-	17.1034	8.33e-07	0.000846	GCTCCGCCCACCCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	84	98	-	17.1034	8.33e-07	0.000846	GGCCCACCCCCGCCC
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	46	57	+	16.7978	8.33e-07	0.386	CCACCATCTGTT
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	46	57	+	16.7978	8.33e-07	0.386	CCACCATCTGTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	41	61	-	17.4032	8.34e-07	0.042	CATCGCTTTCAGTTCCCGTTT
ELK4	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	41	-	16.6	8.34e-07	0.0164	CCGCTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	55	-	16.6	8.34e-07	0.0164	CCGCTTCCGGT
ELK4	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	60	70	+	16.6	8.34e-07	0.0164	CCGCTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	74	84	+	16.6	8.34e-07	0.0164	CCGCTTCCGGT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	59	75	+	16.7091	8.37e-07	0.00297	CGGGCCCCGCCCCTTCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	59	75	+	16.7091	8.37e-07	0.00297	CGGGCCCCGCCCCTTCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	59	75	+	16.7091	8.37e-07	0.00297	CGGGCCCCGCCCCTTCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	59	75	+	16.7091	8.37e-07	0.00297	CGGGCCCCGCCCCTTCC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	10	23	-	16.9091	8.39e-07	0.00573	CCCACCGCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	10	23	-	16.9091	8.39e-07	0.00573	CCCACCGCGGCCTG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	32	49	+	5.21053	8.41e-07	0.00915	GGGGAGGAGGAAGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	66	83	-	5.21053	8.41e-07	0.00915	GGGGAGGAGGAAGGAGGG
SP4	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	9	25	-	16.6909	8.44e-07	0.00297	CAGGCTCCGCCCCCTGC
SP4	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	90	106	+	16.6909	8.44e-07	0.00297	CAGGCTCCGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	14	27	-	17.1538	8.46e-07	0.00181	CCCCCGCCCCCGTT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	25	38	-	17.1538	8.46e-07	0.00181	CCCCCACCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	42	55	-	17.1538	8.46e-07	0.00181	GTTCCGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	42	55	-	17.1538	8.46e-07	0.00181	GTTCCGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	42	55	-	17.1538	8.46e-07	0.00181	GTTCCGCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	42	55	-	17.1538	8.46e-07	0.00181	GTTCCGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	21	+	17.1538	8.46e-07	0.00181	CCCCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	21	+	17.1538	8.46e-07	0.00181	CCCCCGCCCCTGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	33	47	+	17.0862	8.47e-07	0.000856	GCTCCGCCTCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	33	47	+	17.0862	8.47e-07	0.000856	GCTCCGCCTCCGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	50	64	+	17.0862	8.47e-07	0.000856	GCTCCGCCTCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	50	64	+	17.0862	8.47e-07	0.000856	GCTCCGCCTCCGGCC
RFX5	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	16	31	+	16.6552	8.49e-07	0.0182	GGTCACCATGGAAACG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	78	93	-	16.6552	8.49e-07	0.0182	GGTCACCATGGAAACG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	59	79	-	16.9388	8.49e-07	0.00136	GAAGCCGGGAGGGAGGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	59	79	-	16.9388	8.49e-07	0.00136	GAAGCCGGGAGGGAGGGGAGA
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	50	63	+	17.1724	8.51e-07	0.0234	GTCGCCCTGACAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	50	63	+	17.1724	8.51e-07	0.0234	GTCGCCCTGACAAC
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	62	78	+	13.2879	8.52e-07	0.291	GGGTCATTCCAAGTTCA
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	40	-	18.1429	8.52e-07	0.0524	CATGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	40	-	18.1429	8.52e-07	0.0524	CATGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	40	-	18.1429	8.52e-07	0.0524	CATGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	40	-	18.1429	8.52e-07	0.0524	CATGACGTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	40	-	18.1429	8.52e-07	0.0524	CATGACGTCACG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	24	37	+	16.4808	8.53e-07	0.0605	AAGGGATGAGTCAC
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	51	-	16.4808	8.53e-07	0.0605	AAGGGATGAGTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	64	77	+	16.4808	8.53e-07	0.0605	AAGGGATGAGTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	91	-	16.4808	8.53e-07	0.0605	AAGGGATGAGTCAC
KLF14	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	63	76	-	17.6379	8.53e-07	0.00825	GGCCCCGCCCCTTT
SP3	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	29	39	+	15.9106	8.55e-07	0.00275	GCCACACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	16	26	-	15.9106	8.55e-07	0.00275	GCCACACCCCC
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	23	37	+	16.8077	8.56e-07	0.141	AGAGGTCAGAGTTCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	69	-	16.8077	8.56e-07	0.141	AGAGGTCAGAGTTCA
PAX5	WILDTYPE__mrna.noflip.NA__chr11:118972528..118972642,-__1252.1.0.0	66	84	+	16.9032	8.58e-07	0.0879	GGGTGCAGCGGGGCAGAAC
Zfx	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	15	28	+	16.8636	8.6e-07	0.00573	GGAGGCGGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	87	100	-	16.8636	8.6e-07	0.00573	GGAGGCGGGGCCTG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	57	72	-	17	8.62e-07	0.0258	CCACGCCCACGCGCGC
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	74	87	+	15.5745	8.62e-07	0.0881	CGGGTCAGAGTTCA
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	74	87	+	15.5745	8.62e-07	0.0881	CGGGTCAGAGTTCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	16	36	+	16.9184	8.62e-07	0.00136	GAGGGAGGCAGGGAGGGAGAC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	37	57	+	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	37	57	+	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	37	57	+	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	37	57	+	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	76	96	+	16.9184	8.62e-07	0.00136	GGAGGAGAAGCAGTGGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	68	88	-	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	68	88	-	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	68	88	-	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	68	88	-	16.9184	8.62e-07	0.00136	GAGGGAGGGAAGAGCGGAAAA
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	+	17.1818	8.63e-07	0.0165	GGTTCCCATAGAAACG
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	+	17.1818	8.63e-07	0.0165	GGTTCCCATAGAAACG
FOS	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	-	15.6809	8.64e-07	0.0631	TGTGACTCATC
FOS	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	-	15.6809	8.64e-07	0.0631	TGTGACTCATC
FOS	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	+	15.6809	8.64e-07	0.0631	TGTGACTCATC
FOS	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	+	15.6809	8.64e-07	0.0631	TGTGACTCATC
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	-	15.8367	8.66e-07	0.0857	CGCCCGGGGGCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	35	48	+	17.1346	8.68e-07	0.00185	GCTCCTCCCCCGCG
Rxra	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	20	33	+	15.439	8.68e-07	0.0847	GGGGTCATAGTTCA
IRF9	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	75	89	-	13.4727	8.7e-07	0.0882	TAGGAAACTGAAACT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	54	70	-	16.6182	8.71e-07	0.00301	GAGACCCCGCCCCTCCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	54	70	-	16.6182	8.71e-07	0.00301	GAGACCCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	54	70	-	16.6182	8.71e-07	0.00301	GAGACCCCGCCCCTCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	54	70	-	16.6182	8.71e-07	0.00301	GAGACCCCGCCCCTCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.1.0	18	28	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.0.0	18	28	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	9	19	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	27	37	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	27	37	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	27	37	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	61	71	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	61	71	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	62	72	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	62	72	+	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	55	65	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	56	66	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	56	66	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	56	66	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	56	66	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	56	66	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	61	71	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	78	88	-	17.4909	8.71e-07	0.00181	GCGCATGCGCC
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	3	16	+	16.7742	8.72e-07	0.11	GTTCCTGGAATGCC
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	44	57	-	16.7742	8.72e-07	0.11	GTTCCTGGAATGCC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	8	25	-	4.96053	8.73e-07	0.00915	GGAGGGAAAGAATGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	35	55	-	16.898	8.75e-07	0.00138	AGAGCAGCGCGAGGAGGGGAG
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	13	27	+	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	4	18	-	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	4	18	-	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	20	34	+	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	20	34	+	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	20	34	+	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	20	34	+	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	61	75	-	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	88	102	-	17.0517	8.75e-07	0.0155	CCCCGCCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	1	15	-	17.0517	8.77e-07	0.000878	GCCCCGCCCTGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	16	30	-	17.0517	8.77e-07	0.000878	GCCCCGCCCTGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	17	31	-	17.0517	8.77e-07	0.000878	CTCCCGCCCCCTCTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	17	31	-	17.0517	8.77e-07	0.000878	CTCCCGCCCCCTCTG
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	36	50	-	17.0517	8.77e-07	0.000878	CTCCCGCCTCCTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	67	+	17.0517	8.77e-07	0.000878	GCTCCGCCCCTCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	39	53	-	17.0517	8.77e-07	0.000878	TGCCCGCCCCCCGCG
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	52	65	-	17.1154	8.8e-07	0.00187	CCCCCGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	50	63	+	17.1154	8.8e-07	0.00187	CCCCCGCCGCCGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	+	17.0984	8.82e-07	0.0372	AGCCCCTGGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	+	17.0984	8.82e-07	0.0372	AGCCCCTGGGGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	40	54	+	16.2883	8.84e-07	0.106	TTGGGGCAGAGGGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	41	55	-	16.2883	8.84e-07	0.106	TTGGGGCAGAGGGGA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	16	+	17.2347	8.84e-07	0.149	GAGCACGTGGC
Tcf12	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	45	+	15.8367	8.84e-07	0.0832	GACAGCTGCGG
Tcf12	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	70	80	-	15.8367	8.84e-07	0.0832	GACAGCTGCGG
Klf12	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	32	46	-	17.623	8.86e-07	0.0228	GGCCACGCCCCCAGC
ZNF263	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	4	24	+	16.8776	8.87e-07	0.00138	GGTGGAGGCGGAGAAGGGATG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	45	65	+	16.8776	8.87e-07	0.00138	TGATGCGGGGGAGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	51	71	+	16.8776	8.87e-07	0.00138	TGATGCGGGGGAGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	14	34	-	16.8776	8.87e-07	0.00138	TGATGCGGGGGAGGGGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	44	64	-	16.8776	8.87e-07	0.00138	TGATGCGGGGGAGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	50	70	-	16.8776	8.87e-07	0.00138	TGATGCGGGGGAGGGGGGGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	91	111	-	16.8776	8.87e-07	0.00138	GGTGGAGGCGGAGAAGGGATG
CTCF	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	19	37	+	17.0328	8.88e-07	0.0254	CCGCCAGCAGAGGCCGCTG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	10	27	+	4.85526	8.89e-07	0.00915	GGGAAGGAGAAAGGAAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	21	38	-	4.85526	8.89e-07	0.00915	GGGAAGGAGAAAGGAAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	77	94	+	4.85526	8.89e-07	0.00915	GGGAAGGAGAAAGGAAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	88	105	-	4.85526	8.89e-07	0.00915	GGGAAGGAGAAAGGAAGG
RFX3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	-	17.1364	8.9e-07	0.0165	CGTCGCCTTGGAAACG
RFX3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	+	17.1364	8.9e-07	0.0165	CGTCGCCTTGGAAACG
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	18	+	17.0345	8.93e-07	0.000888	GCCCCTCCCCCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	32	+	17.0345	8.93e-07	0.000888	GCCCCTCCCCCCAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	32	+	17.0345	8.93e-07	0.000888	GCCCCTCCCCCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	32	+	17.0345	8.93e-07	0.000888	GCCCCTCCCCCCAGC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	13	27	-	17.0345	8.93e-07	0.000888	GCTCCTCCCCCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	102	+	17.0345	8.93e-07	0.000888	GCTCCTCCCCCTCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	31	41	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	33	43	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	33	43	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	51	61	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	55	65	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	56	66	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	56	66	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	57	67	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	64	74	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	75	85	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	98	108	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	99	109	-	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	16	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	17	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	17	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	28	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	28	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	30	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	40	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	51	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	51	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	58	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	60	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	60	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	64	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	72	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	80	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	82	+	16.8654	8.98e-07	0.00147	CCCCCTCCCCC
RFX2	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	+	16.7286	9e-07	0.0198	CGTGGCCATGGCAACC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	36	56	+	16.8571	9e-07	0.0014	GGAGGCGAGGCAGGAAGAGGA
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	42	55	-	16.9149	9.01e-07	0.0778	GCCACCCCGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	96	109	-	16.9149	9.01e-07	0.0778	GCCACCCCGCTGCG
RXRB	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	31	44	+	14.8	9.02e-07	0.0825	TGGGTCAAAGGGCA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	77	92	-	16	9.05e-07	0.0628	AGGGTTAAAGTCCGGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	77	92	-	16	9.05e-07	0.0628	AGGGTTAAAGTCCGGA
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	77	92	-	16	9.05e-07	0.0628	AGGGTTAAAGTCCGGA
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	77	92	-	16	9.05e-07	0.0628	AGGGTTAAAGTCCGGA
SP4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	60	76	-	16.5273	9.06e-07	0.0031	CAAGCCACGCCCCAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	6	20	-	17.0172	9.07e-07	0.000892	CCCCCGCCTCCTTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	6	20	-	17.0172	9.07e-07	0.000892	CCCCCGCCTCCTTGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	6	20	-	17.0172	9.07e-07	0.000892	CCCCCGCCTCCTTGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	6	20	-	17.0172	9.07e-07	0.000892	CCCCCGCCTCCTTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	25	39	-	17.0172	9.07e-07	0.000892	GCCCCGCCTCCCTGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	25	39	-	17.0172	9.07e-07	0.000892	GCCCCGCCTCCCTGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	67	81	-	17.0172	9.07e-07	0.000892	GCCCCGCCTCCCTGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	67	81	-	17.0172	9.07e-07	0.000892	GCCCCGCCTCCCTGA
SP2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	109	+	17.0172	9.07e-07	0.000892	CCCCCGCCTCCTTGC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	51	64	+	16.5352	9.09e-07	0.0493	GAAAAGAGGAAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	51	64	+	16.5352	9.09e-07	0.0493	GAAAAGAGGAAGCA
HESX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	-	13.6182	9.09e-07	0.871	GCTAATTGGC
LBX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	12.1017	9.09e-07	0.871	GCCAATTAGC
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	47	+	17.9388	9.09e-07	0.0524	CATGACGTCACA
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	52	+	17.9388	9.09e-07	0.0524	CATGACGTCACA
ESX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	11.6806	9.09e-07	0.871	GCCAATTAGC
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	1	10	+	15.2	9.09e-07	0.427	CCATTGTCCT
Sox6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	1	10	+	15.2	9.09e-07	0.427	CCATTGTCCT
JUND	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	+	16.7234	9.09e-07	0.0616	TGTGACTCATC
JUND	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	-	16.7234	9.09e-07	0.0616	TGTGACTCATC
JUND	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	+	16.7234	9.09e-07	0.0616	TGTGACTCATC
JUND	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	-	16.7234	9.09e-07	0.0616	TGTGACTCATC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	31	40	+	17.3265	9.09e-07	0.12	GGGAATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	31	40	+	17.3265	9.09e-07	0.12	GGGAATTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	59	68	+	17.3265	9.09e-07	0.12	GGGAATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	59	68	+	17.3265	9.09e-07	0.12	GGGAATTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	105	114	-	17.3265	9.09e-07	0.12	GGGAATTTCC
ETV4	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.3621	9.09e-07	0.062	ACCGGAAGTA
ETV1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.4727	9.09e-07	0.0567	ACCGGAAGTA
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	74	-	17.9388	9.09e-07	0.0524	CATGACGTCACA
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	79	-	17.9388	9.09e-07	0.0524	CATGACGTCACA
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	14.7561	9.09e-07	0.113	ATCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	14.7561	9.09e-07	0.113	ATCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	14.5714	9.09e-07	0.037	ATCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	14.5714	9.09e-07	0.037	ATCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	17.6897	9.09e-07	0.112	ATCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	17.6897	9.09e-07	0.112	ATCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	18.0182	9.09e-07	0.115	ATCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	18.0182	9.09e-07	0.115	ATCACGTGAC
FIGLA	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	33	+	14.5345	9.09e-07	0.749	ACCACCTGTT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	15.7692	9.09e-07	0.0484	ATCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	15.7692	9.09e-07	0.0484	ATCACGTGAC
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	55	65	+	15.0862	9.09e-07	0.0904	GGCTGTGGTTT
NFYB	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	62	76	-	17	9.09e-07	0.0409	CAATCGGCCAATCGG
TFAP2B	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	+	15.9636	9.11e-07	0.0893	AGCCCTAGGGCA
TFAP2B	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	-	15.9636	9.11e-07	0.0893	AGCCCTAGGGCA
NR2C2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	42	-	17.2571	9.11e-07	0.0458	CAGGGTCAGAGGCCG
NR2C2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	73	87	+	17.2571	9.11e-07	0.0458	CAGGGTCAGAGGCCG
ZNF263	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	33	53	+	16.8367	9.14e-07	0.0014	TGGGGCGGGCGGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	22	42	-	16.8367	9.14e-07	0.0014	GGGGGCGGGGGGGGTGGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	22	42	-	16.8367	9.14e-07	0.0014	GGGGGCGGGGGGGGTGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	22	42	-	16.8367	9.14e-07	0.0014	GGGGGCGGGGGGGGTGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	22	42	-	16.8367	9.14e-07	0.0014	GGGGGCGGGGGGGGTGGGGTG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	49	69	-	16.8367	9.14e-07	0.0014	AGAGGCGGGTGGGGGAGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	62	82	-	16.8367	9.14e-07	0.0014	TGGGGCGGGCGGGGAGGGAGG
SP4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	21	37	-	16.5091	9.14e-07	0.0031	CCGGCCCCGCCCCTCCC
SP4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	49	65	-	16.5091	9.14e-07	0.0031	CCGGCCCCGCCCCTCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	71	87	-	16.5091	9.14e-07	0.0031	CCGGCCCCGCCCCTCCC
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	74	87	+	15.3171	9.15e-07	0.0847	AGGGTCAGAGTTCA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	74	87	+	15.3171	9.15e-07	0.0847	AGGGTCAGAGTTCA
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	4	13	-	17.1101	9.16e-07	0.00876	ACCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	4	13	-	17.1101	9.16e-07	0.00876	ACCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	28	37	-	17.1101	9.16e-07	0.00876	ACCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	28	37	-	17.1101	9.16e-07	0.00876	ACCCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	59	68	-	17.1101	9.16e-07	0.00876	ACCCCCCCAC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	28	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	32	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	32	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	41	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	41	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	46	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	64	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	70	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	70	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	65	74	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	65	74	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	80	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	80	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	80	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	80	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	82	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	84	-	16.5612	9.16e-07	0.00384	TGGGTGGGGC
ZNF740	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	47	56	+	17.1101	9.16e-07	0.00876	ACCCCCCCAC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	22	31	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	29	38	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	29	38	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	29	38	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	31	40	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	32	41	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	33	42	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	34	43	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	34	43	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	49	58	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	49	58	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	51	60	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	65	74	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	69	78	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	69	78	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	74	83	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	75	84	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	85	94	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	85	94	+	16.5612	9.16e-07	0.00384	TGGGTGGGGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	4	21	-	4.64474	9.17e-07	0.00931	GGAAAGAATGAAGGGGGG
ELF3	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	34	46	+	17.5	9.19e-07	0.0804	GACCCGGAAGTGT
ELF1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	25	36	+	17.4364	9.19e-07	0.0421	AAACCGGAAGTA
ELF1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	90	-	17.4364	9.19e-07	0.0421	AAACCGGAAGTA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	19	38	+	15.6422	9.19e-07	0.0184	GACCACCCCACCCCCCCCCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	76	-	16.7755	9.19e-07	0.0213	GGCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	76	-	16.7755	9.19e-07	0.0213	GGCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	96	-	16.7755	9.19e-07	0.0213	GGCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	96	-	16.7755	9.19e-07	0.0213	GGCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	78	+	16.7755	9.19e-07	0.0213	GGCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	78	+	16.7755	9.19e-07	0.0213	GGCACGTGACC
BATF3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	+	15.0455	9.19e-07	0.0374	CGGTGACGTCACCG
BATF3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	-	15.0455	9.19e-07	0.0374	CGGTGACGTCACCG
BATF3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	+	15.0455	9.19e-07	0.0374	CGGTGACGTCACCG
BATF3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	-	15.0455	9.19e-07	0.0374	CGGTGACGTCACCG
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	9	21	+	16.8621	9.22e-07	0.232	TTCATTTGCATAC
NFYA	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	10	27	-	17.2805	9.22e-07	0.0154	AAGCATCTGATTGGCTGA
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	25	40	+	16.6857	9.23e-07	0.0198	GGGTGCCATGGCAACG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	25	40	+	16.6857	9.23e-07	0.0198	GGGTGCCATGGCAACG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	25	40	+	16.6857	9.23e-07	0.0198	GGGTGCCATGGCAACG
Klf12	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	11	25	-	17.5574	9.23e-07	0.0228	GGCCACGCCCCTCGG
Stat5a::Stat5b	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	55	65	-	16.1837	9.23e-07	0.219	GTTTCCCAGAA
CEBPA	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	31	41	-	16.1633	9.23e-07	0.431	ATTGCACAACC
CEBPA	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	84	+	16.1633	9.23e-07	0.431	ATTGCACAACC
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	35	+	17	9.24e-07	0.000904	GCCCCGCCCTTGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	95	109	-	17	9.24e-07	0.000904	GCCCCGCCCTTGTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	95	109	-	17	9.24e-07	0.000904	GCCCCGCCCTTGTCC
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	4	18	-	17.1061	9.24e-07	0.0119	CTCTCGCGGTGCCTG
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	22	36	+	17.1061	9.24e-07	0.0119	CTCTCGCGGTGCCTG
EGR4	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	89	104	-	16.9091	9.26e-07	0.0258	CCACGCCCCCGCCTTA
EGR4	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	11	26	+	16.9091	9.26e-07	0.0258	CCACGCCCCCGCCTTA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	52	67	+	16.9091	9.26e-07	0.0258	CCCCGCCCCCGCACGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	51	71	+	16.8163	9.27e-07	0.00142	GAAGAAAGGGAGGGGAGGGGA
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	30	43	-	17.0577	9.29e-07	0.00195	GCCCCGCCCCCGGT
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	53	66	-	17.0577	9.29e-07	0.00195	GCCCCGCCCCCGGT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	25	+	17.0577	9.29e-07	0.00195	GCCCCGCCCCCGGT
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	62	+	17.0577	9.29e-07	0.00195	GCCCCGCCCCCGGT
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	85	+	17.0577	9.29e-07	0.00195	GCCCCGCCCCCGGT
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	8	22	+	17	9.29e-07	0.174	ATAAAGAGAAAGTGA
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	8	22	+	17	9.29e-07	0.174	ATAAAGAGAAAGTGA
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	+	15.8265	9.29e-07	0.0857	AGCCCTAGGGCA
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	-	15.8265	9.29e-07	0.0857	AGCCCTAGGGCA
RFX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	54	+	16.4828	9.29e-07	0.0183	GGTCGCCATGGTGACG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	54	+	16.4828	9.29e-07	0.0183	GGTCGCCATGGTGACG
RFX5	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	61	76	-	16.4828	9.29e-07	0.0183	GGTCGCCATGGTGACG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	11	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	11	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	16	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	22	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	22	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	23	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	28	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	42	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	42	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	42	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	42	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	42	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	47	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	50	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	60	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	60	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	60	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	60	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	71	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	71	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	72	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	76	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	80	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	80	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	88	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	94	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	109	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	109	+	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	6	16	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	9	19	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	9	19	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	15	25	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	27	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	31	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	27	37	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	41	51	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	60	70	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	63	73	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	63	73	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	64	74	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	64	74	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	65	75	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	65	75	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	66	76	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	66	76	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	68	78	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	87	97	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	93	103	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	104	114	-	15.7398	9.31e-07	0.00275	CCCCCGCCCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	13	+	17.8448	9.33e-07	0.128	AGGCACGTGCCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	13	+	17.8448	9.33e-07	0.128	AGGCACGTGCCC
Klf12	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	4	18	-	17.541	9.35e-07	0.0228	GGCCACGCCCCCCGC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	52	-	17.2787	9.35e-07	0.0343	AAGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	52	-	17.2787	9.35e-07	0.0343	AAGCCGGAAGTG
CREB3	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	54	67	-	17.3571	9.35e-07	0.123	CTGACACGTCACAG
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	48	61	+	17.3571	9.35e-07	0.123	CTGACACGTCACAG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	48	61	+	17.3571	9.35e-07	0.123	CTGACACGTCACAG
CREB3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	48	61	+	17.3571	9.35e-07	0.123	CTGACACGTCACAG
CREB3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	48	61	+	17.3571	9.35e-07	0.123	CTGACACGTCACAG
SP4	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	66	82	+	16.4545	9.36e-07	0.00315	GGGGCCACGCCCCCAGT
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	19	33	-	16.9808	9.36e-07	0.0409	CAACCGGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	19	33	-	16.9808	9.36e-07	0.0409	CAACCGGCCAATGAG
RFX4	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	29	44	+	17.0758	9.38e-07	0.0242	CGTGGCCATGGCAACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	31	+	16.9828	9.38e-07	0.000912	TCCCCGCCCCTCCCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	31	+	16.9828	9.38e-07	0.000912	TCCCCGCCCCTCCCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	32	+	16.9828	9.38e-07	0.000912	CCCCCTCCCCCTCCG
SP2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	44	+	16.9828	9.38e-07	0.000912	CCCCCGCCCTCCTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	37	51	+	16.9828	9.38e-07	0.000912	GGCCCGCCCCGGCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	71	85	-	16.9828	9.38e-07	0.000912	CCCCCGCCCTCCTCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	66	80	-	16.9138	9.38e-07	0.0155	CTCCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	66	80	-	16.9138	9.38e-07	0.0155	CTCCGCCCCCGCCCC
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	67	80	+	15.1707	9.39e-07	0.0847	GGGGTGAAGGGTCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	3	23	+	16.7959	9.4e-07	0.00142	GGAGGCGGGCGGGGGTGGGGC
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	18	38	+	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	18	38	+	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	18	38	+	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	18	38	+	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	18	38	+	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	77	97	-	16.7959	9.4e-07	0.00142	GGAGCAGGGAGGGCAGGAGCC
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	44	54	-	16.6034	9.41e-07	0.0159	GGGCGGGAGAG
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	61	71	+	16.6034	9.41e-07	0.0159	GGGCGGGAGAG
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	87	100	+	17.2273	9.41e-07	0.198	GTGCCACGTCAAGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	30	46	-	16.4364	9.43e-07	0.00315	TAAGACACGCCCACCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	30	46	-	16.4364	9.43e-07	0.00315	TAAGACACGCCCACCAG
Rxra	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	44	57	+	15.1585	9.45e-07	0.0847	GAGGTCAGGGGTCA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	26	45	+	15.578	9.45e-07	0.0185	CCACCCCCCCCCCCCCCCGC
Zfx	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	16	29	+	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	11	24	-	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	11	24	-	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	25	38	-	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	77	90	+	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	86	99	-	16.7879	9.45e-07	0.00573	GTGGGCGGGGCCTG
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	27	41	+	16.8065	9.45e-07	0.559	TTTTCAAATGCAAAT
Stat4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	20	33	+	16.3103	9.47e-07	0.0732	CTTCCGGGAAGGCA
Stat4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	82	95	-	16.3103	9.47e-07	0.0732	CTTCCGGGAAGGCA
ZIC1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	21	34	-	16.8085	9.48e-07	0.0778	CGCCCCCCGCCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	94	+	16.8085	9.48e-07	0.0778	CGCCCCCCGCCGCG
Klf1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	35	45	-	16.9697	9.49e-07	0.0207	TGCCACACCCA
Klf1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	70	80	+	16.9697	9.49e-07	0.0207	TGCCACACCCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	33	50	+	4.35526	9.49e-07	0.00932	CTAAAGAAGGAAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	33	50	+	4.35526	9.49e-07	0.00932	CTAAAGAAGGAAGGAAGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	32	48	+	16.4182	9.51e-07	0.00315	TCGGCCCCGCCCACAGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	32	48	+	16.4182	9.51e-07	0.00315	TCGGCCCCGCCCACAGT
ZIC3	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	20	34	-	17.0429	9.52e-07	0.0555	CGCCCCCCGCCGCGG
ZIC3	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	95	+	17.0429	9.52e-07	0.0555	CGCCCCCCGCCGCGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	8	28	+	16.7755	9.54e-07	0.00143	GAGGGAAGGAGAAAGGAAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	13	33	-	16.7755	9.54e-07	0.00143	GGAGGAAGGGAGGGAGAGCGA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	20	40	-	16.7755	9.54e-07	0.00143	GAGGGAAGGAGAAAGGAAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	75	95	+	16.7755	9.54e-07	0.00143	GAGGGAAGGAGAAAGGAAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	87	107	-	16.7755	9.54e-07	0.00143	GAGGGAAGGAGAAAGGAAGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	9	23	+	16.9655	9.55e-07	0.000914	CCCCCGCCTTCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	9	23	+	16.9655	9.55e-07	0.000914	CCCCCGCCTTCTCCC
SP2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	9	23	-	16.9655	9.55e-07	0.000914	CCCCCGCCTTCTCCC
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	12	26	-	16.9655	9.55e-07	0.000914	GCCCCGCCCACCAGC
SP2	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	42	+	16.9655	9.55e-07	0.000914	GCCCCGCCCACCAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	25	39	-	16.9655	9.55e-07	0.000914	GCCCCACCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	25	39	-	16.9655	9.55e-07	0.000914	GCCCCACCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	46	60	-	16.9655	9.55e-07	0.000914	GCCCCGCCCCTGGAG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	46	60	-	16.9655	9.55e-07	0.000914	GCCCCGCCCCTGGAG
SP2	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	73	87	-	16.9655	9.55e-07	0.000914	GCCCCGCCCACCAGC
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	103	+	16.9655	9.55e-07	0.000914	GCCCCGCCCACCAGC
SP2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	92	106	+	16.9655	9.55e-07	0.000914	CCCCCGCCTTCTCCC
SP2	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	92	106	-	16.9655	9.55e-07	0.000914	CCCCCGCCTTCTCCC
KLF13	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	56	73	-	16.4483	9.56e-07	0.0379	GGGCCACGCCCCCGCCTG
PRDM1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	72	86	-	16.9818	9.56e-07	0.174	GGAAAGTGAAAGGAG
ELF1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	21	32	+	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	93	104	+	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	22	-	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	22	-	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	22	-	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	22	-	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
ELF1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	94	-	17.3455	9.57e-07	0.0421	CACCCGGAAGTC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	+	15.9273	9.57e-07	0.0893	TGCCCCCGGGCG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	5	19	+	16.9615	9.59e-07	0.0409	AAAGGCACCAATCAG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	13	+	15.8793	9.63e-07	0.129	AGGCACGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	13	+	15.8793	9.63e-07	0.129	AGGCACGTGCCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	28	41	-	17.0192	9.63e-07	0.00201	CCTCCACCCCCGGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	72	85	+	17.0192	9.63e-07	0.00201	CCTCCACCCCCGGC
KLF13	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	11	28	-	16.431	9.63e-07	0.0379	AGGCCACGCCCCCTCCCC
KLF13	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	40	57	-	16.431	9.63e-07	0.0379	AGGCCACGCCCCCTCCCC
KLF13	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	58	75	+	16.431	9.63e-07	0.0379	AGGCCACGCCCCCTCCCC
KLF13	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	87	104	+	16.431	9.63e-07	0.0379	AGGCCACGCCCCCTCCCC
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	-	16.4138	9.63e-07	0.0183	CGTTTCTATGGGAACC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	-	16.4138	9.63e-07	0.0183	CGTTTCTATGGGAACC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	28	38	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	37	47	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	44	54	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	44	54	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	44	54	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	44	54	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	41	51	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	41	51	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	41	51	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	41	51	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	46	56	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	59	69	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	64	74	+	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	77	87	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	83	93	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	98	108	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	98	108	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	98	108	-	17.0727	9.64e-07	0.00188	GCGCGTGCGCC
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	13	27	+	16.6731	9.65e-07	0.0798	GGGGCAGCGTGACCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	+	17.1897	9.66e-07	0.0343	AGCCCCCGGGGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	71	85	+	16.9483	9.68e-07	0.000923	GGCCCGCCCCTTCTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	71	85	+	16.9483	9.68e-07	0.000923	GGCCCGCCCCTTCTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	19	39	-	16.7551	9.68e-07	0.00144	GAGGGAGGGGGGCAGGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	51	71	+	16.7551	9.68e-07	0.00144	GAGGGCGGGAGGGCGGGAGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	44	64	-	16.7551	9.68e-07	0.00144	GAGGGCGGGAGGGCGGGAGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	69	89	+	16.7551	9.68e-07	0.00144	GGAAGAGGAGCAGAAGGGGGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	15	29	+	17.1316	9.68e-07	0.0599	CCGGTGACTCAGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	15	29	+	17.1316	9.68e-07	0.0599	CCGGTGACTCAGCGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	94	108	-	17.1316	9.68e-07	0.0599	CCGGTGACTCAGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	94	108	-	17.1316	9.68e-07	0.0599	CCGGTGACTCAGCGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	20	37	-	4.14474	9.7e-07	0.00932	GGGAGGGGGGCAGGAGGA
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	88	100	+	16.7377	9.72e-07	0.272	CTGTCTGCCACCA
Zfx	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	30	43	+	16.7727	9.74e-07	0.00573	CTGGGCGGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	72	85	-	16.7727	9.74e-07	0.00573	CTGGGCGGGGCCTG
EGR1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	101	114	-	17	9.75e-07	0.00201	ACCCCGCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	7	20	+	17	9.75e-07	0.00201	CCACCGCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	7	20	+	17	9.75e-07	0.00201	CCACCGCCTCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	39	+	17	9.75e-07	0.00201	CCTCCGCCCACTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	39	+	17	9.75e-07	0.00201	CCTCCGCCCACTCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	26	40	-	17.4754	9.75e-07	0.0228	GGCCACACCCTCACT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	26	40	-	17.4754	9.75e-07	0.0228	GGCCACACCCTCACT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	+	17.0164	9.77e-07	0.0372	TGCCCCGGGGGGG
KLF14	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	21	34	+	17.431	9.78e-07	0.00907	GGCCCCGCCCCCCA
KLF14	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	81	94	-	17.431	9.78e-07	0.00907	GGCCCCGCCCCCCA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	93	113	-	15.2449	9.8e-07	0.0892	GGCAGGACCTTGGCTAGAGCT
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	93	113	-	15.2449	9.8e-07	0.0892	GGCAGGACCTTGGCTAGAGCT
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	93	113	-	15.2449	9.8e-07	0.0892	GGCAGGACCTTGGCTAGAGCT
BATF3	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	29	42	+	14.803	9.81e-07	0.0374	TAATGACGTCATAG
BATF3	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	73	86	-	14.803	9.81e-07	0.0374	TAATGACGTCATAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	14	28	-	16.931	9.81e-07	0.000931	GCCCCTCCTCCTGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	14	28	-	16.931	9.81e-07	0.000931	GCCCCTCCTCCTGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	56	70	+	16.931	9.81e-07	0.000931	GGCCCGCCCCTCCAG
SP2	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	100	114	-	16.931	9.81e-07	0.000931	ACCCCGCCTCCGCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	32	48	+	16.3455	9.81e-07	0.00322	TCGGCCCCGCCCACAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	32	48	+	16.3455	9.81e-07	0.00322	TCGGCCCCGCCCACAGC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	11	24	-	14.6182	9.85e-07	0.101	GTGAAAGCGAAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	23	36	-	14.6182	9.85e-07	0.101	GTGAAAGCGAAAGT
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	23	36	-	14.6182	9.85e-07	0.101	GTGAAAGCGAAAGT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	23	40	+	3.96053	9.86e-07	0.00932	GGAAGGAGGGGAGCCTAG
RFX4	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	-	17.0152	9.86e-07	0.0242	GGTTGCTAGGGCAACG
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	14	27	-	16.9808	9.92e-07	0.00202	CCTCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	30	43	-	16.9808	9.92e-07	0.00202	CCTCCGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	30	43	-	16.9808	9.92e-07	0.00202	CCTCCGCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	30	43	-	16.9808	9.92e-07	0.00202	CCTCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	30	43	-	16.9808	9.92e-07	0.00202	CCTCCGCCTCCTCC
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	23	36	+	15.7879	9.92e-07	0.379	CGCCCCCCACAAAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	69	79	-	15.8571	9.96e-07	0.0541	GGGTGAGTCAG
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	12	28	-	16.3091	9.97e-07	0.00324	GACGCCCCGCCCCCCGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	29	45	+	16.3091	9.97e-07	0.00324	GACGCCCCGCCCCCCGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	6	20	-	16.9138	9.98e-07	0.000942	GCCCCGCCCTGTCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	34	48	-	16.9138	9.98e-07	0.000942	GCCCCTCCCCCTCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	38	52	-	16.9138	9.98e-07	0.000942	GCCCCTCCTCCCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	38	52	-	16.9138	9.98e-07	0.000942	GCCCCTCCTCCCGGC
SP2	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	81	+	16.9138	9.98e-07	0.000942	GCCCCTCCCCCTCAG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	2	15	+	16.6837	9.98e-07	0.0465	GGGGGGCTGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	2	15	+	16.6837	9.98e-07	0.0465	GGGGGGCTGGGGGG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	+	16.3276	1e-06	0.0183	GGTTCCCATAGAAACG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	+	16.3276	1e-06	0.0183	GGTTCCCATAGAAACG
Zfx	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	8	21	+	16.7576	1e-06	0.00573	GCGGCTCGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	50	63	+	16.7576	1e-06	0.00573	GCGGCTCGGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	52	65	-	16.7576	1e-06	0.00573	GCGGCTCGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	94	107	-	16.7576	1e-06	0.00573	GCGGCTCGGGCCTG
Rxra	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	31	44	+	15.0854	1e-06	0.0847	TGGGTCAAAGGGCA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	93	-	16.5818	1e-06	0.0164	GCACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	93	-	16.5818	1e-06	0.0164	GCACTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	93	-	16.5818	1e-06	0.0164	GCACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	93	-	16.5818	1e-06	0.0164	GCACTTCCGGT
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	65	84	+	15.4404	1e-06	0.0191	CCGCACCCCACCCCCAGACC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	52	-	17.3091	1e-06	0.0421	AAGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	52	-	17.3091	1e-06	0.0421	AAGCCGGAAGTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	52	67	+	16.8	1.01e-06	0.0258	CCCCGCCCCCGCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	52	67	+	16.8	1.01e-06	0.0258	CCCCGCCCCCGCCCTC
EGR4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	48	63	-	16.8	1.01e-06	0.0258	CCCCGCCCCCGCCCTC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	25	38	+	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	25	38	+	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	25	38	+	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	25	38	+	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	76	89	+	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	26	39	-	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	77	90	-	15.9455	1.01e-06	0.0486	AGAAAGGGGAAGTC
EHF	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	15	26	+	16.9836	1.01e-06	0.0586	GACCCGGAAGTT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	77	94	-	3.69737	1.01e-06	0.00932	GGCAGGGAGGAAGGCGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	77	94	-	3.69737	1.01e-06	0.00932	GGCAGGGAGGAAGGCGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	5	25	-	16.6939	1.01e-06	0.00148	GGAGGCGGGGCTAGAGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	69	89	-	16.6939	1.01e-06	0.00148	GGAGGAAGGCGAGGCAGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	69	89	-	16.6939	1.01e-06	0.00148	GGAGGAAGGCGAGGCAGGAAG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	-	16.5	1.01e-06	0.0208	CGTTTCTATGGGAACC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	-	16.5	1.01e-06	0.0208	CGTTTCTATGGGAACC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	12	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	12	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	12	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	31	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	35	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	35	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	43	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	43	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	43	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	43	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	43	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	24	34	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	24	34	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	66	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	66	+	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	72	82	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	73	83	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	73	83	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	73	83	-	16.7692	1.01e-06	0.00157	GCCCCTCCCCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	21	34	-	16.9615	1.01e-06	0.00204	CTCCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	40	53	-	16.9615	1.01e-06	0.00204	CCGCCGCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	71	84	-	16.9615	1.01e-06	0.00204	CCGCCGCCTCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	10	23	+	16.9615	1.01e-06	0.00204	CTCCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	62	75	+	16.9615	1.01e-06	0.00204	CCGCCGCCTCCTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	15	+	16.8966	1.01e-06	0.000951	GCTCCGCCCCTCGGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	15	+	16.8966	1.01e-06	0.000951	GCTCCGCCCCTCGGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	7	21	-	16.8966	1.01e-06	0.000951	GCTCCGCCCCTCGGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	7	21	-	16.8966	1.01e-06	0.000951	GCTCCGCCCCTCGGC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	48	58	+	17.1897	1.02e-06	0.0586	TCGCCCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	48	58	+	17.1897	1.02e-06	0.0586	TCGCCCACGCA
E2F4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	44	54	-	16.3966	1.02e-06	0.0137	GGGCGGGAGAG
E2F4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	61	71	+	16.3966	1.02e-06	0.0137	GGGCGGGAGAG
EGR3	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	40	54	-	16.7586	1.02e-06	0.0155	CGCCGCCCCCGCGCG
EGR3	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	61	75	+	16.7586	1.02e-06	0.0155	CGCCGCCCCCGCGCG
YY1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	68	79	-	16.7692	1.02e-06	0.0143	AAAAATGGCGGC
RFX4	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	71	+	16.9697	1.02e-06	0.0242	CGTTTCCATAGAAACG
RFX4	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	59	-	16.9697	1.02e-06	0.0242	CGTTTCCATAGAAACG
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	+	14.2885	1.02e-06	0.149	TGACACCTGTCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	+	14.2885	1.02e-06	0.149	TGACACCTGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	+	14.2885	1.02e-06	0.149	TGACACCTGTCA
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	28	45	-	16.3103	1.02e-06	0.0379	AAGACACGCCCACCAGTG
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	28	45	-	16.3103	1.02e-06	0.0379	AAGACACGCCCACCAGTG
E2F7	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	32	45	+	12.2295	1.02e-06	0.416	AATTCCCGCCAAAC
E2F7	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	70	83	-	12.2295	1.02e-06	0.416	AATTCCCGCCAAAC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	20	33	+	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	20	33	+	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	51	64	+	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	51	64	-	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	51	64	-	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	51	64	-	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	51	64	-	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	82	95	-	16.7424	1.02e-06	0.00573	GCAGCCTCGGCCTC
Mafb	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	98	109	-	15.5281	1.02e-06	0.321	AATTTGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	36	47	+	15.5281	1.02e-06	0.321	AATTTGCTGACG
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	36	47	+	15.5281	1.02e-06	0.321	AATTTGCTGACG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	9	29	+	16.6735	1.03e-06	0.00148	GGAGGAGGCGAAGAGGAGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	16	36	+	16.6735	1.03e-06	0.00148	GGAGGTGGGAGGAGGGAGTGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	21	41	+	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	21	41	+	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	21	41	+	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	21	41	+	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	36	56	+	16.6735	1.03e-06	0.00148	GGGGGAGGGACCGCAGGGAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	52	72	+	16.6735	1.03e-06	0.00148	GGGGGAGGGACCGCAGGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	43	63	-	16.6735	1.03e-06	0.00148	GGGGGAGGGACCGCAGGGAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	59	79	-	16.6735	1.03e-06	0.00148	GGGGGAGGGACCGCAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	84	104	-	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	84	104	-	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	84	104	-	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	84	104	-	16.6735	1.03e-06	0.00148	GGGAAAGGAGGGGGTGGAGGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	19	30	-	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	19	30	-	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	27	38	-	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	86	97	-	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	101	112	-	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	14	+	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	29	+	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	29	+	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	88	+	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	96	+	16.4474	1.03e-06	0.00716	ACCCCGCCCCCT
CTCF	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	36	54	+	16.8033	1.03e-06	0.0254	CTTCCTCCAGAGGGCGGGA
SP4	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	32	48	+	16.2364	1.03e-06	0.00324	GAAACCCCGCCCACAAG
SP4	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	23	39	-	16.2364	1.03e-06	0.00324	CAGGACCCGCCCCCAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	62	78	+	16.2364	1.03e-06	0.00324	CTAGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	62	78	+	16.2364	1.03e-06	0.00324	CTAGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	62	78	+	16.2364	1.03e-06	0.00324	CTAGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	62	78	+	16.2364	1.03e-06	0.00324	CTAGCCCCGCCCCGTCC
SP4	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	76	92	+	16.2364	1.03e-06	0.00324	CAGGACCCGCCCCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	45	59	-	16.8793	1.03e-06	0.000965	CCCCCGCCTCCGGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	75	92	-	3.51316	1.03e-06	0.00932	GAAAGAAGGCAAGGAAAA
TP63	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	-	14.0517	1.03e-06	0.228	AACAAGTCTCAACTTGTC
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	46	60	+	17.0152	1.03e-06	0.128	AGCCATGACTCTGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	46	60	+	17.0152	1.03e-06	0.128	AGCCATGACTCTGCA
KLF16	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	14	24	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	34	44	+	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	25	35	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	25	35	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	39	49	+	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	55	65	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	68	78	+	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	68	78	+	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	71	81	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	71	81	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	71	81	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	71	81	-	16.8621	1.04e-06	0.00285	GCCACGCCCCT
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	-	16.9242	1.04e-06	0.0185	CGTTTCTATGGGAACC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	-	16.9242	1.04e-06	0.0185	CGTTTCTATGGGAACC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	24	42	+	16.7869	1.04e-06	0.0254	CTCCCACAAGGGGGAGCCG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	49	63	-	16.8714	1.04e-06	0.0562	CCCCACCCGCGGCGC
KLF14	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	9	22	+	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	25	38	+	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	25	38	+	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	25	38	+	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	25	38	+	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
KLF14	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	93	106	-	17.3276	1.04e-06	0.00907	GACCACGCCCCCGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	22	36	-	17.377	1.04e-06	0.0228	GGCCACGCCCCTGCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	22	36	-	17.377	1.04e-06	0.0228	GGCCACGCCCCTGCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	13	27	+	16.8621	1.04e-06	0.000978	AGCCCGCCTCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	34	44	+	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	39	49	+	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	68	78	+	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	68	78	+	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	14	24	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	25	35	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	25	35	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	55	65	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	71	81	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	71	81	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	71	81	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	71	81	-	15.6748	1.04e-06	0.00294	GCCACGCCCCT
REST	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	45	65	+	15.1122	1.05e-06	0.0892	CTCAGCACCCTGGAGCGCCGC
FOXP1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	16	30	+	16.3944	1.05e-06	0.192	CTTGAGTAAACAAAG
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	23	37	-	16.3944	1.05e-06	0.192	CTTGAGTAAACAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	23	37	-	16.3944	1.05e-06	0.192	CTTGAGTAAACAAAG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	78	92	+	16.3944	1.05e-06	0.192	CTTGAGTAAACAAAG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	85	99	-	16.3944	1.05e-06	0.192	CTTGAGTAAACAAAG
Tcf12	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	15	25	-	15.8163	1.05e-06	0.0832	AACAGCTGCGG
Tcf12	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	100	+	15.8163	1.05e-06	0.0832	AACAGCTGCGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	23	33	+	16.569	1.05e-06	0.0161	GGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	23	33	+	16.569	1.05e-06	0.0161	GGGCGGGAGGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	15	25	-	16.569	1.05e-06	0.0161	GGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	39	49	-	16.569	1.05e-06	0.0161	GGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	39	49	-	16.569	1.05e-06	0.0161	GGGCGGGAGGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	83	+	16.9231	1.05e-06	0.00212	CCCCCTCCCCCTGC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	35	55	+	16.6327	1.06e-06	0.00152	GGGGGTGGGGGTGGGGGGTGG
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	20	33	+	14.6364	1.06e-06	0.0374	CGCTGACGTCAGCA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	20	33	+	14.6364	1.06e-06	0.0374	CGCTGACGTCAGCA
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	20	33	+	14.6364	1.06e-06	0.0374	CGCTGACGTCAGCA
BATF3	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	82	95	-	14.6364	1.06e-06	0.0374	CGCTGACGTCAGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	41	51	+	16.7455	1.06e-06	0.00205	GCGCCGGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	64	74	-	16.7455	1.06e-06	0.00205	GCGCCGGCGCA
PLAG1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	66	79	-	16.551	1.06e-06	0.0465	GGGGGGGAAGGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	36	49	+	16.551	1.06e-06	0.0465	GGGGGGGAAGGGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	28	44	-	16.1636	1.06e-06	0.00328	GAAGCCCCGCCTCCATC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	28	44	-	16.1636	1.06e-06	0.00328	GAAGCCCCGCCTCCATC
SP4	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	37	53	-	16.1636	1.06e-06	0.00328	CCAGCCCCGCCCCCGCG
SP4	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	62	78	+	16.1636	1.06e-06	0.00328	CCAGCCCCGCCCCCGCG
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	51	64	+	15.8545	1.06e-06	0.0486	GAAAAGAGGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	51	64	+	15.8545	1.06e-06	0.0486	GAAAAGAGGAAGCA
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	55	66	-	17.051	1.06e-06	0.086	TGTCAGGGGGCT
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	55	66	-	17.051	1.06e-06	0.086	TGTCAGGGGGCT
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	35	49	-	16.5769	1.06e-06	0.0805	AGGTCAGGGCGCCCC
STAT1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	16	26	-	16.6727	1.06e-06	0.148	GTTCCGGGAAA
STAT1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	67	77	+	16.6727	1.06e-06	0.148	GTTCCGGGAAA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	64	75	+	17.0656	1.07e-06	0.0343	GTCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	64	75	+	17.0656	1.07e-06	0.0343	GTCCCGGAAGTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	22	42	-	16.6122	1.07e-06	0.00153	TGGGGTGGAATGGGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	22	42	-	16.6122	1.07e-06	0.00153	TGGGGTGGAATGGGGGGAGGG
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	36	49	+	16.9138	1.07e-06	0.0267	GTTCCCATAGAAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	36	49	+	16.9138	1.07e-06	0.0267	GTTCCCATAGAAAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	26	39	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	26	39	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	26	39	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	26	39	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	48	61	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	48	61	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	48	61	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	48	61	-	16.9038	1.07e-06	0.00212	ACTCCGCCCCCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	55	68	-	16.9038	1.07e-06	0.00212	TCTCCGCCCCCTCG
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	28	42	+	16.9605	1.07e-06	0.0599	ATGGTGACTCAGCTC
RREB1	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	50	69	-	15.2752	1.07e-06	0.0196	CCACCACACACACAACCTGA
Klf12	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	19	33	+	17.3115	1.08e-06	0.0228	GACCACGCCCACGGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	13	27	+	16.8276	1.08e-06	0.00101	GACCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	13	27	+	16.8276	1.08e-06	0.00101	GACCCGCCCCTCCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	42	+	16.8276	1.08e-06	0.00101	GGCCCGCCCCCAGCT
SP2	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	17	31	-	16.8276	1.08e-06	0.00101	TCCCCGCCTCCCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	32	46	-	16.8276	1.08e-06	0.00101	GTCCCACCCCCCACC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	57	71	-	16.8276	1.08e-06	0.00101	GCCCCACCCCCGCTC
SP2	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	84	98	+	16.8276	1.08e-06	0.00101	TCCCCGCCTCCCTGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	22	39	+	3.14474	1.08e-06	0.00932	GGAGGGGAGGCGGGAAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	13	33	+	16.5918	1.09e-06	0.00153	AGTGGAGGAGTGGAAAGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	33	53	+	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	33	53	+	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	33	53	+	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	33	53	+	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	72	92	-	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	72	92	-	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	72	92	-	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	72	92	-	16.5918	1.09e-06	0.00153	GGTGGAGGGAGGGAAGAGCGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	82	102	-	16.5918	1.09e-06	0.00153	AGTGGAGGAGTGGAAAGGGAG
USF1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	41	51	-	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	78	88	-	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	28	+	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	37	+	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	60	+	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	72	+	16.4898	1.09e-06	0.0215	GCCACGTGACT
USF1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	74	+	16.4898	1.09e-06	0.0215	GCCACGTGACT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	48	64	+	16.0909	1.09e-06	0.00335	GCGGCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	48	64	+	16.0909	1.09e-06	0.00335	GCGGCCCCGCCCCCGCC
SP4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	51	67	-	16.0909	1.09e-06	0.00335	GCGGCCCCGCCCCCGCC
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	5	21	+	16.8776	1.1e-06	0.338	AGGTGAGAGGGAGGTGA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	51	65	+	16.8103	1.1e-06	0.00102	GGCCCGCCCCGTCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	51	65	+	16.8103	1.1e-06	0.00102	GGCCCGCCCCGTCCG
SP2	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	50	64	-	16.8103	1.1e-06	0.00102	GGCCCGCCCCGTCCG
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	41	53	+	16.5738	1.1e-06	0.272	CTGTCTGCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	41	53	+	16.5738	1.1e-06	0.272	CTGTCTGCCAGCT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	10	30	-	16.5714	1.1e-06	0.00155	GGAGGGGGAAGGGAAGGAGGT
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	15	31	-	16.0727	1.1e-06	0.00336	CTCGCCCCGCCCCTTGT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	37	46	-	16.9574	1.11e-06	0.473	AGGTGTGAAA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	37	46	-	16.9574	1.11e-06	0.473	AGGTGTGAAA
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	70	-	16.8182	1.11e-06	0.471	AACAGCTGAT
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	70	-	16.8182	1.11e-06	0.471	AACAGCTGAT
Rfx1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	57	70	+	16.8966	1.11e-06	0.0267	GTTTCCATAGAAAC
Rfx1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	45	58	-	16.8966	1.11e-06	0.0267	GTTTCCATAGAAAC
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	42	55	-	16.5161	1.11e-06	0.11	CTTCCTAGAAAGTC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	42	55	-	16.5161	1.11e-06	0.11	CTTCCTAGAAAGTC
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	12	28	+	14.3485	1.11e-06	0.264	GGGGGCAGCGTGACCCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	28	41	-	17.2414	1.11e-06	0.00924	GGCCCCGCCCACTA
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	1	12	-	16.6667	1.11e-06	0.0514	CAGCGTCCGCTT
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	1	12	-	16.6667	1.11e-06	0.0514	CAGCGTCCGCTT
HINFP	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	2	13	-	16.6667	1.11e-06	0.0514	CAGCGTCCGCTT
HINFP	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	102	113	+	16.6667	1.11e-06	0.0514	CAGCGTCCGCTT
HINFP	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	103	114	+	16.6667	1.11e-06	0.0514	CAGCGTCCGCTT
ELF3	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	25	37	+	17.1207	1.11e-06	0.0804	CAGCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	78	90	-	17.1207	1.11e-06	0.0804	CAGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	78	90	-	17.1207	1.11e-06	0.0804	CAGCCGGAAGTGA
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	61	72	+	17.0328	1.11e-06	0.0343	TTCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	61	72	+	17.0328	1.11e-06	0.0343	TTCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	61	72	+	17.0328	1.11e-06	0.0343	TTCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	61	72	+	17.0328	1.11e-06	0.0343	TTCCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	61	72	+	17.0328	1.11e-06	0.0343	TTCCCGGAAGTG
SP2	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	8	22	-	16.7931	1.11e-06	0.00102	GCTCCGCCCCCTGCA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	42	+	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	42	+	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	28	42	-	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	28	42	-	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	87	+	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	73	87	-	16.7931	1.11e-06	0.00102	GCTCCGCCCCTTCGG
SP2	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	107	+	16.7931	1.11e-06	0.00102	GCTCCGCCCCCTGCA
KLF13	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	60	77	-	16.1207	1.12e-06	0.0379	GCACCACGCCCCCTTCCG
RFX2	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	+	16.3	1.12e-06	0.0224	CGTTGCCCTAGCAACC
NHLH1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	+	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	+	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	-	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	-	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	-	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	-	17.1379	1.12e-06	0.0521	CGCAGCTGCT
NHLH1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	-	17.1379	1.12e-06	0.0521	CGCAGCTGCT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	47	61	+	16.9079	1.12e-06	0.0599	GCCATGACTCTGCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	47	61	+	16.9079	1.12e-06	0.0599	GCCATGACTCTGCAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	7	27	+	16.551	1.12e-06	0.00157	CAAGCAGGGGCGGGAGGGGGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	88	108	-	16.551	1.12e-06	0.00157	CAAGCAGGGGCGGGAGGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	-	17.0862	1.12e-06	0.0343	TGCCCCAGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	-	17.0862	1.12e-06	0.0343	TGCCCCAGGGGCT
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	74	89	+	15.5091	1.12e-06	0.0628	AGGGTCAGAGTTCACG
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	74	89	+	15.5091	1.12e-06	0.0628	AGGGTCAGAGTTCACG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	66	+	15.8367	1.12e-06	0.0498	AGCAGCTGTCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	66	+	15.8367	1.12e-06	0.0498	AGCAGCTGTCCCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	7	20	+	16.8462	1.12e-06	0.0022	CCCTCGCCCCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	29	+	16.8462	1.12e-06	0.0022	TCCCCACCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	29	+	16.8462	1.12e-06	0.0022	TCCCCACCCCCGGC
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	8	21	+	14.8936	1.12e-06	0.094	GGGGTGAGAGGTCA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	8	21	+	14.8936	1.12e-06	0.094	GGGGTGAGAGGTCA
RFX3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	-	16.803	1.13e-06	0.0193	CGTTTCCAAGGCGACG
RFX3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	+	16.803	1.13e-06	0.0193	CGTTTCCAAGGCGACG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	21	39	+	16.5806	1.13e-06	0.0879	AAACTCAGCGAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	21	39	+	16.5806	1.13e-06	0.0879	AAACTCAGCGAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	63	81	+	16.5806	1.13e-06	0.0879	AAACTCAGCGAGGCGGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	63	81	+	16.5806	1.13e-06	0.0879	AAACTCAGCGAGGCGGGGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	25	39	+	16.7759	1.13e-06	0.00103	TCTCCGCCCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	40	54	-	16.7759	1.13e-06	0.00103	TCTCCGCCCCCCCCG
SP4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	39	55	-	16.0182	1.13e-06	0.00339	GCCGCCCCGCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	60	76	+	16.0182	1.13e-06	0.00339	GCCGCCCCGCCCCCTCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	60	76	+	16.0182	1.13e-06	0.00339	GCCGCCCCGCCCCCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	13	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	23	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	23	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	23	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	23	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	28	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	28	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	15	25	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	15	25	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	20	30	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	20	30	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	48	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	28	38	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	30	40	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	30	40	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	70	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	87	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	95	+	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	87	97	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	102	112	-	16.6897	1.13e-06	0.00285	ACCCCGCCCCC
STAT3	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	20	30	+	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	41	51	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	64	74	+	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	60	70	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	60	70	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	60	70	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	60	70	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	60	70	-	16	1.13e-06	0.0728	CTTCCGGGAAG
STAT3	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	85	95	-	16	1.13e-06	0.0728	CTTCCGGGAAG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	51	68	+	2.90789	1.13e-06	0.00932	GGGAGGGAGGCAGGCTTG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	47	64	-	2.90789	1.13e-06	0.00932	GGGAGGGAGGCAGGCTTG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	63	80	+	16.9878	1.13e-06	0.0175	AAGGAGCTGATTGGCTTA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	63	80	+	16.9878	1.13e-06	0.0175	AAGGAGCTGATTGGCTTA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	63	80	+	16.9878	1.13e-06	0.0175	AAGGAGCTGATTGGCTTA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	63	80	+	16.9878	1.13e-06	0.0175	AAGGAGCTGATTGGCTTA
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	47	60	-	17.2069	1.13e-06	0.00924	GGCCCCGCCCACCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	47	60	-	17.2069	1.13e-06	0.00924	GGCCCCGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	47	60	-	17.2069	1.13e-06	0.00924	GGCCCCGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	47	60	-	17.2069	1.13e-06	0.00924	GGCCCCGCCCACCC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	64	76	-	15.8163	1.13e-06	0.0498	TGCAGCTGCCACT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	64	76	-	15.8163	1.13e-06	0.0498	TGCAGCTGCCACT
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	9	19	+	16.5273	1.13e-06	0.00216	GCGCCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	50	60	+	16.5273	1.13e-06	0.00216	GCGCCGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	51	61	+	16.5273	1.13e-06	0.00216	GCGCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	44	54	-	16.5273	1.13e-06	0.00216	GCGCCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	55	65	-	16.5273	1.13e-06	0.00216	GCGCCGGCGCG
EHF	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	25	36	+	16.918	1.13e-06	0.0586	AAACCGGAAGTA
EHF	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	90	-	16.918	1.13e-06	0.0586	AAACCGGAAGTA
SP4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	45	61	+	16	1.14e-06	0.00339	CACGCCCCGCCCCCCGG
SP4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	54	70	-	16	1.14e-06	0.00339	CACGCCCCGCCCCCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	26	40	-	16.5172	1.14e-06	0.0155	CCCCGCCTCCGCACC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	26	40	-	16.5172	1.14e-06	0.0155	CCCCGCCTCCGCACC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	26	40	-	16.5172	1.14e-06	0.0155	CCCCGCCTCCGCACC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	26	40	-	16.5172	1.14e-06	0.0155	CCCCGCCTCCGCACC
EGR3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	75	89	+	16.5172	1.14e-06	0.0155	CCCCGCCTCCGCACC
BATF3	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	24	37	+	14.4394	1.14e-06	0.0382	GGCTGACGTCATCT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	10	23	-	16.6364	1.14e-06	0.0063	CCCCCCGCGGCCTG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	68	87	-	15.1284	1.14e-06	0.0196	ACACAAACCAAGCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	68	87	-	15.1284	1.14e-06	0.0196	ACACAAACCAAGCCCCGCCC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	57	70	-	16.398	1.15e-06	0.0465	GGGGGTGACGGGGG
SP2	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	19	+	16.7586	1.15e-06	0.00104	GCCCCGCCCACCTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	27	41	-	16.7586	1.15e-06	0.00104	GCCCCGCCTCCATCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	27	41	-	16.7586	1.15e-06	0.00104	GCCCCGCCTCCATCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	72	86	+	16.7586	1.15e-06	0.00104	GCTCCGCCCTCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	72	86	+	16.7586	1.15e-06	0.00104	GCTCCGCCCTCCCCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	26	46	+	16.5102	1.15e-06	0.00161	GGGGGAGGCGGAGACGGAGAC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	69	89	+	16.5102	1.15e-06	0.00161	GAAGAAGTGGGAGGAAGAGAA
INSM1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	53	64	+	16.949	1.15e-06	0.086	GGTCTGGGGGCG
INSM1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	51	62	-	16.949	1.15e-06	0.086	GGTCTGGGGGCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	72	89	-	2.82895	1.15e-06	0.00932	GGAGGAAGGCGAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	72	89	-	2.82895	1.15e-06	0.00932	GGAGGAAGGCGAGGCAGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	57	70	+	17.1897	1.15e-06	0.00924	GGCCCCGCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	57	70	+	17.1897	1.15e-06	0.00924	GGCCCCGCCCCCTG
EGR1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	15	28	-	16.8269	1.15e-06	0.0022	CTTCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	22	35	-	16.8269	1.15e-06	0.0022	CCCCAGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	22	35	-	16.8269	1.15e-06	0.0022	CCCCAGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	22	35	-	16.8269	1.15e-06	0.0022	CCCCAGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	27	+	16.8269	1.15e-06	0.0022	GCCACGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	27	+	16.8269	1.15e-06	0.0022	GCCACGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	27	+	16.8269	1.15e-06	0.0022	GCCACGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	27	+	16.8269	1.15e-06	0.0022	GCCACGCCCCCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	24	37	+	16.8269	1.15e-06	0.0022	CCCCAGCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	87	100	+	16.8269	1.15e-06	0.0022	CTTCCGCCCCCGGC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	46	60	+	17.1967	1.15e-06	0.0228	GACCACGCCCCGCTG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	46	60	+	17.1967	1.15e-06	0.0228	GACCACGCCCCGCTG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	66	83	+	16.6545	1.15e-06	0.349	CTTATCTTGGAAGCACAG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	+	15.7636	1.15e-06	0.054	TCCCCCGGGGCA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	-	15.7636	1.15e-06	0.054	TCCCCCGGGGCA
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	3	18	-	8.36538	1.16e-06	0.29	CCACCCCCAACGTTGG
Spz1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	13	23	-	15.8273	1.16e-06	0.117	AGGGTTTCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	13	23	-	15.8273	1.16e-06	0.117	AGGGTTTCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	65	81	+	15.9636	1.16e-06	0.00342	GATGCCACGCCCCTCAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	65	81	+	15.9636	1.16e-06	0.00342	GATGCCACGCCCCTCAT
ZBTB33	WILDTYPE__mrna.noflip.NA__chr11:118436602..118436716,-__1351.1.0.0	26	40	-	16.8485	1.16e-06	0.0146	CTCTCGTGAGACCTC
JUND	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	-	16.5957	1.16e-06	0.0733	GATGACTCATC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	33	50	-	2.80263	1.16e-06	0.00932	GGGAGGGGGGAAGCAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	33	50	-	2.80263	1.16e-06	0.00932	GGGAGGGGGGAAGCAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	96	113	+	2.80263	1.16e-06	0.00932	GGAGGGAGGGATGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	96	113	+	2.80263	1.16e-06	0.00932	GGAGGGAGGGATGGCAGC
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	24	37	+	16.4242	1.16e-06	0.15	GAGGTCAGAGTTCA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	68	-	16.4242	1.16e-06	0.15	GAGGTCAGAGTTCA
Zfx	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	85	98	+	16.6212	1.16e-06	0.0063	TGGGGCGGGGCCTG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	79	96	-	2.78947	1.16e-06	0.00932	GGCAGGCAGGCAGGCAGG
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	26	41	-	16.7561	1.16e-06	0.351	TTATATGCAAATCAAG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	+	11.2177	1.17e-06	0.0189	GGCGCGTGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	-	11.2177	1.17e-06	0.0189	GGCACGCGCC
KLF5	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	12	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	15	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	1	10	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	1	10	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	1	10	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	2	11	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	3	12	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	3	12	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	3	12	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	3	12	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	6	15	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	25	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	25	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	17	26	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	17	26	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	11	20	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	30	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	22	31	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	33	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	33	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	36	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	36	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	36	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	20	29	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	20	29	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	20	29	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	29	38	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	20	29	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	20	29	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	21	30	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	26	35	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	26	35	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	46	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	30	39	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	31	40	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	31	40	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	31	40	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	31	40	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	45	54	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	47	56	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	47	56	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	38	47	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	43	52	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	62	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	45	54	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	46	55	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	69	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	52	61	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	61	70	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	61	70	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	61	70	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	61	70	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	61	70	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	74	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	74	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	74	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	74	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	58	67	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	58	67	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	89	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	89	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	89	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	89	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	102	111	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	102	111	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	102	111	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	102	111	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	112	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	104	113	+	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	100	109	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	100	109	-	16.2857	1.17e-06	0.00172	GCCCCGCCCT
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	18	35	+	2.77632	1.17e-06	0.00932	GAAAGGAAGGGAGGGAAA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	13	30	-	2.77632	1.17e-06	0.00932	GAAAGGAAGGGAGGGAAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	85	102	+	2.77632	1.17e-06	0.00932	GAAAGGAAGGGAGGGAAA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	80	97	-	2.77632	1.17e-06	0.00932	GAAAGGAAGGGAGGGAAA
BATF3	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	24	37	-	14.3485	1.17e-06	0.0382	AGATGACGTCAGCC
RXRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	74	87	+	14.0727	1.17e-06	0.089	CGGGTCAGAGTTCA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	74	87	+	14.0727	1.17e-06	0.089	CGGGTCAGAGTTCA
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	5	15	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	5	15	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	5	15	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	5	15	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	5	15	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	25	35	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	25	35	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	25	35	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	25	35	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	25	35	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	53	63	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	53	63	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	53	63	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	53	63	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	53	63	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	55	65	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	55	65	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	55	65	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	55	65	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	65	75	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	65	75	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	78	88	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	78	88	+	16.4545	1.17e-06	0.0164	TCACTTCCGGC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	29	39	+	16.6721	1.17e-06	0.0124	CCGGAAGTGCG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	63	73	+	16.6721	1.17e-06	0.0124	CCGGAAGTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	76	86	-	16.6721	1.17e-06	0.0124	CCGGAAGTGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	76	86	-	16.6721	1.17e-06	0.0124	CCGGAAGTGCG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	108	+	15.5306	1.17e-06	0.0428	GGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	108	+	15.5306	1.17e-06	0.0428	GGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	108	+	15.5306	1.17e-06	0.0428	GGCAGCTGCAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	108	+	15.5306	1.17e-06	0.0428	GGCAGCTGCAG
ELK4	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	37	-	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	76	-	16.4545	1.17e-06	0.0164	TCACTTCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	90	-	16.4545	1.17e-06	0.0164	TCACTTCCGGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	31	44	-	16.8077	1.18e-06	0.0022	TCCCCGCCTCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	57	70	-	16.8077	1.18e-06	0.0022	CCTCCTCCCCCGGC
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	92	105	-	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	23	+	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	39	+	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	39	+	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	39	+	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	39	+	16.8077	1.18e-06	0.0022	ACCACGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	41	+	16.8077	1.18e-06	0.0022	TCCCCGCCCCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	41	+	16.8077	1.18e-06	0.0022	TCCCCGCCCCCGGG
EGR1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	45	58	+	16.8077	1.18e-06	0.0022	CCTCCTCCCCCGGC
RFX3	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	-	16.7424	1.18e-06	0.0198	GGTTGCTAGGGCAACG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	-	16.8852	1.18e-06	0.0537	AGCCCCCAGGGCG
SP2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	10	24	-	16.7241	1.18e-06	0.00106	GTCCCGCCCCCTGAA
SP2	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	67	81	-	16.7241	1.18e-06	0.00106	GTCCCGCCCCCTGAA
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	17	+	16.7241	1.18e-06	0.00106	TCCCCGCCCACCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	48	+	16.7241	1.18e-06	0.00106	GTCCCGCCCCCTGAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	48	+	16.7241	1.18e-06	0.00106	GTCCCGCCCCCTGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.0	54	68	+	16.7241	1.18e-06	0.00106	GTCCCGCCTCTCGTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.1	54	68	+	16.7241	1.18e-06	0.00106	GTCCCGCCTCTCGTC
SP2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	105	+	16.7241	1.18e-06	0.00106	GTCCCGCCCCCTGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	93	107	+	16.7241	1.18e-06	0.00106	GTCCCGCCTCTCGTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	93	107	+	16.7241	1.18e-06	0.00106	GTCCCGCCTCTCGTC
Bach1::Mafk	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	88	102	+	16.8026	1.18e-06	0.0599	GCGCTGACGCAGCAG
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	13	27	-	16.8026	1.18e-06	0.0599	GCGCTGACGCAGCAG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	67	80	+	17.1552	1.18e-06	0.00924	TGCCCCGCCCCCCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	-	16.8852	1.18e-06	0.0372	TGCCCCAGGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	-	16.8852	1.18e-06	0.0372	TGCCCCAGGGGCT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	68	83	+	16.5818	1.18e-06	0.0258	GCCCGCCCACCCAACG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	38	51	+	16.6061	1.18e-06	0.0063	GGGGGCGGGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	27	40	-	16.6061	1.18e-06	0.0063	GGGGGCGGGGCCTA
Zfx	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	75	88	+	16.6061	1.18e-06	0.0063	GGGGGCGGGGCCTA
Zfx	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	64	77	-	16.6061	1.18e-06	0.0063	GGGGGCGGGGCCTA
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	11	29	-	16.5738	1.19e-06	0.0254	CTCCCGCCAGGGGGCGGAG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	11	29	-	16.5738	1.19e-06	0.0254	CTCCCGCCAGGGGGCGGAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	1	18	+	2.69737	1.19e-06	0.00932	GGAGGGAGGGGCGGAAAG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	97	114	-	2.69737	1.19e-06	0.00932	GGAGGGAGGGGCGGAAAG
ATF7	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	2	15	+	17.5857	1.19e-06	0.0669	TTATGACGTCACAG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	37	50	-	17.5857	1.19e-06	0.0669	TTATGACGTCACAG
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	37	50	-	17.5857	1.19e-06	0.0669	TTATGACGTCACAG
ATF7	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	65	78	+	17.5857	1.19e-06	0.0669	TTATGACGTCACAG
ATF7	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	100	113	-	17.5857	1.19e-06	0.0669	TTATGACGTCACAG
KLF13	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	20	37	+	15.9828	1.19e-06	0.0379	AGACCACGCCCACTCTGC
KLF13	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	29	46	-	15.9828	1.19e-06	0.0379	AGACCACGCCCACTCTGC
KLF13	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	69	86	+	15.9828	1.19e-06	0.0379	AGACCACGCCCACTCTGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	-	17.0345	1.19e-06	0.0343	CGCCCCCCGGGCA
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	59	75	+	14.7541	1.19e-06	0.152	AGGTCACTCGAGGCTCA
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	56	70	-	16.8182	1.19e-06	0.128	TTAAATGACTCAGCA
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	30	-	16.5161	1.19e-06	0.0879	GAGAGCGGCGGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	30	-	16.5161	1.19e-06	0.0879	GAGAGCGGCGGGGCGGGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	2	18	+	15.8909	1.19e-06	0.00345	CCAGCCCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	2	18	+	15.8909	1.19e-06	0.00345	CCAGCCCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	2	18	+	15.8909	1.19e-06	0.00345	CCAGCCCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	2	18	+	15.8909	1.19e-06	0.00345	CCAGCCCCGCCCCCGAC
SP4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	97	113	-	15.8909	1.19e-06	0.00345	CCAGCCCCGCCCCCGAC
Stat4	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	67	80	+	16.1552	1.19e-06	0.0732	CTTCCGGGAAAACA
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	29	42	+	17.1379	1.19e-06	0.00924	CGCCCCGCCCCCTT
KLF13	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	2	19	-	15.9655	1.2e-06	0.0379	CGGCCACGCCCCCCGCGG
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	+	16.1429	1.2e-06	0.023	GGTTCCCATAGAAACG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	+	16.1429	1.2e-06	0.023	GGTTCCCATAGAAACG
Klf12	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	28	42	-	17.1475	1.2e-06	0.0228	GGCCACGCCCCCGAT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	4	24	+	16.449	1.2e-06	0.00167	AGGGGAGGGGAGGATGGGGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	71	91	+	16.449	1.2e-06	0.00167	GGAGGAAGTGAGAGGAGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	80	100	-	16.449	1.2e-06	0.00167	GGAGGCGGAGGAGGAGTGAGT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	6	16	+	16.2727	1.2e-06	0.051	GGGTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	6	16	+	16.2727	1.2e-06	0.051	GGGTGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	21	31	+	16.2727	1.2e-06	0.051	GGGTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	80	90	+	16.2727	1.2e-06	0.051	GGATGACTCAC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	80	90	+	16.2727	1.2e-06	0.051	GGATGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	80	90	+	16.2727	1.2e-06	0.051	GGATGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	80	90	+	16.2727	1.2e-06	0.051	GGATGACTCAC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	33	43	-	16.3636	1.2e-06	0.0495	AGTGACTCATG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	27	37	-	16.2727	1.2e-06	0.051	GGGTGACTCAC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	18	28	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	22	32	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	22	32	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	31	41	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	31	41	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	36	46	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	29	39	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	29	39	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	29	39	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	31	41	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	32	42	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	54	64	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	51	61	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	74	84	+	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	65	75	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	69	79	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	69	79	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	74	84	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	85	95	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	85	95	-	16.8182	1.2e-06	0.0207	GGCCCCACCCA
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	12	-	17.5818	1.2e-06	0.0663	AATGACGTCATA
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	12	-	17.5818	1.2e-06	0.0663	AATGACGTCATA
Creb5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	85	-	17.5818	1.2e-06	0.0663	AATGACGTCATA
Creb5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	41	+	17.5818	1.2e-06	0.0663	AATGACGTCATA
Creb5	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	103	114	+	17.5818	1.2e-06	0.0663	AATGACGTCATA
YY1	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	88	99	+	16.6731	1.2e-06	0.0155	TAAGATGGCGGC
YY1	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	88	99	+	16.6731	1.2e-06	0.0155	TAAGATGGCGGC
YY1	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	90	101	+	16.6731	1.2e-06	0.0155	TAAGATGGCGGC
YY1	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	16	27	-	16.6731	1.2e-06	0.0155	TAAGATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	26	37	-	16.6731	1.2e-06	0.0155	CAAAATGGCGCC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	26	37	-	16.6731	1.2e-06	0.0155	CAAAATGGCGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	10	24	-	16.7069	1.2e-06	0.00107	GCTCCGCCTCTGCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	70	84	-	16.7069	1.2e-06	0.00107	GCCCCACCCACCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	33	47	+	16.7069	1.2e-06	0.00107	GCTCCGCCTCTGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	49	+	16.7069	1.2e-06	0.00107	GCCCCGCCCCGAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	49	+	16.7069	1.2e-06	0.00107	GCCCCGCCCCGAGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	49	+	16.7069	1.2e-06	0.00107	GCCCCGCCCCGAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	49	+	16.7069	1.2e-06	0.00107	GCCCCGCCCCGAGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	75	+	16.7069	1.2e-06	0.00107	GCCCCACCCACCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	75	+	16.7069	1.2e-06	0.00107	GCCCCACCCACCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	13	24	-	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	70	81	-	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	70	81	-	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	70	81	-	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	70	81	-	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	34	45	+	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	68	79	+	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	68	79	+	16.2895	1.2e-06	0.00787	GCCACGCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	56	71	+	16.5636	1.2e-06	0.0258	CTCCGCCCACCCCCTA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	56	71	+	16.5636	1.2e-06	0.0258	CTCCGCCCACCCCCTA
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	22	+	15.0092	1.2e-06	0.0196	CCCCCCCCCCCCCCCCCCGT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	22	+	15.0092	1.2e-06	0.0196	CCCCCCCCCCCCCCCCCCGT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	28	47	+	15.0092	1.2e-06	0.0196	CCCCCCCCCGCCCCCCGCGC
RREB1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	93	112	-	15.0092	1.2e-06	0.0196	CCCCCCCCCCCCCCCCCCGT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	76	89	-	17.1207	1.2e-06	0.00924	GGCCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	76	89	-	17.1207	1.2e-06	0.00924	GGCCCCGCCCCTCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	6	19	-	16.7885	1.2e-06	0.0022	ACCCCACCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	26	39	-	16.7885	1.2e-06	0.0022	CCGCCTCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	26	39	-	16.7885	1.2e-06	0.0022	CCGCCTCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	54	67	-	16.7885	1.2e-06	0.0022	GGGCCGCCCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	54	67	-	16.7885	1.2e-06	0.0022	GGGCCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	54	67	-	16.7885	1.2e-06	0.0022	GGGCCGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	19	+	16.7885	1.2e-06	0.0022	TCCCCACCCCCTCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	27	40	+	16.7885	1.2e-06	0.0022	CACCCTCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	56	+	16.7885	1.2e-06	0.0022	ACCCCACCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	56	+	16.7885	1.2e-06	0.0022	ACCCCACCCCCACC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	11	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	11	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	16	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	22	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	22	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	23	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	6	16	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	28	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	9	19	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	9	19	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	15	25	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	27	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	31	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	42	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	42	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	42	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	42	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	42	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	27	37	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	47	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	50	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	60	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	60	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	60	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	60	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	41	51	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	71	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	71	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	72	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	76	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	60	70	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	80	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	80	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	63	73	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	63	73	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	64	74	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	64	74	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	65	75	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	65	75	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	66	76	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	66	76	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	88	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	68	78	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	94	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	87	97	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	109	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	109	+	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	93	103	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	104	114	-	16.6552	1.21e-06	0.00285	CCCCCGCCCCC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	40	52	-	17.0517	1.21e-06	0.0804	AAGCCGGAAGTGT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	40	52	-	17.0517	1.21e-06	0.0804	AAGCCGGAAGTGT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	-	15.7091	1.21e-06	0.0387	CGCCCCAGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	+	15.7091	1.21e-06	0.0387	CGCCCCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	+	15.7091	1.21e-06	0.0387	CGCCCCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	+	15.7091	1.21e-06	0.0387	CGCCCCAGGCG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	38	51	+	16.5909	1.21e-06	0.00634	CGGGGCGGGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	27	40	-	16.5909	1.21e-06	0.00634	CGGGGCGGGGCCTA
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	19	39	+	16.4286	1.22e-06	0.00168	AGAAGAGGAGGGGGCAGGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	11	31	-	16.4286	1.22e-06	0.00168	CGGGGAGCGGGAGGAGGGAAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	31	51	-	16.4286	1.22e-06	0.00168	GGAAGAGGAAGAGGAGGAGTT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	56	76	+	16.4286	1.22e-06	0.00168	GGAAGAGGAAGAGGAGGAGTT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	39	59	-	16.4286	1.22e-06	0.00168	GGAAGAGGAAGAGGAGGAGTT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	64	84	+	16.4286	1.22e-06	0.00168	GGAAGAGGAAGAGGAGGAGTT
KLF13	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	9	26	-	15.931	1.22e-06	0.0379	TGGCCACGCCCCTCGGGC
SP1	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	16	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	1	11	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	2	12	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	2	12	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	2	12	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	2	12	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	24	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	4	14	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	7	17	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	30	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	30	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	10	20	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	34	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	34	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	35	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	37	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	37	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	37	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	29	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	29	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	19	29	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	29	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	19	29	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	25	35	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	25	35	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	47	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	53	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	37	47	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	42	52	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	63	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	64	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	64	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	64	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	44	54	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	44	54	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	45	55	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	70	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	51	61	-	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	51	61	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	75	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	75	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	75	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	75	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	77	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	77	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	79	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	79	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	62	72	-	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	90	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	90	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	90	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	90	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	92	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	96	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	107	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	107	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	108	+	16.5962	1.22e-06	0.00157	TCCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	113	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	104	114	+	16.5962	1.22e-06	0.00157	GCCCCGCCCTC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	15	29	-	16.6182	1.22e-06	0.0875	CACCGCCCGCTGCGC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	86	100	+	16.6182	1.22e-06	0.0875	CACCGCCCGCTGCGC
SP2	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	36	50	-	16.6897	1.22e-06	0.00107	GCCCCTCCTCTCCCG
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	72	86	-	16.6897	1.22e-06	0.00107	CCTCCGCCCCTCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	95	109	-	16.6897	1.22e-06	0.00107	TCCCCGCCCCCAGGC
SP2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	20	+	16.6897	1.22e-06	0.00107	TCCCCGCCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	26	+	16.6897	1.22e-06	0.00107	TCCCCGCCCACCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	26	+	16.6897	1.22e-06	0.00107	TCCCCGCCCACCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	26	+	16.6897	1.22e-06	0.00107	TCCCCGCCCACCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	26	+	16.6897	1.22e-06	0.00107	TCCCCGCCCACCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	29	43	+	16.6897	1.22e-06	0.00107	CCTCCGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	29	43	+	16.6897	1.22e-06	0.00107	CCTCCGCCCCTCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	65	79	+	16.6897	1.22e-06	0.00107	GCCCCTCCTCTCCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	42	-	17	1.22e-06	0.128	CGCCACGTGCCG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	42	-	17	1.22e-06	0.128	CGCCACGTGCCG
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	42	-	17	1.22e-06	0.128	CGCCACGTGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	58	76	-	16.5246	1.22e-06	0.0254	CCGCCTGTAGAGGGCGGGC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	58	76	-	16.5246	1.22e-06	0.0254	CCGCCTGTAGAGGGCGGGC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	+	15.7091	1.22e-06	0.054	CGCCCCCAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	+	15.7091	1.22e-06	0.054	CGCCCCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	+	15.7091	1.22e-06	0.054	CGCCCCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	+	15.7091	1.22e-06	0.054	CGCCCCCAGGCG
Arntl	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	11	+	15.1311	1.23e-06	0.0883	CGTCACGTGC
Arntl	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	90	+	15.1311	1.23e-06	0.0883	CGTCACGTGC
Arntl	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	25	34	-	15.1311	1.23e-06	0.0883	CGTCACGTGC
Arntl	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	104	113	-	15.1311	1.23e-06	0.0883	CGTCACGTGC
Myod1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	62	74	-	15.7755	1.23e-06	0.0498	TGCAGCTGCTGCT
ELF4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	15	26	+	17	1.23e-06	0.0343	GACCCGGAAGTT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	26	40	-	17.0984	1.23e-06	0.0228	GGCCACACCCTCACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	26	40	-	17.0984	1.23e-06	0.0228	GGCCACACCCTCACC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	11	31	-	16.4082	1.23e-06	0.0017	AGGAGAGGGGAGAGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	11	31	-	16.4082	1.23e-06	0.0017	AGGAGAGGGGAGAGGGGAGGG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	10	23	-	16.5758	1.23e-06	0.0064	CCCACCGGGGCCTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	5	19	-	16.6724	1.24e-06	0.00108	GCCCCGCCCCGCCTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	5	19	-	16.6724	1.24e-06	0.00108	GCCCCGCCCCGCCTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	5	19	-	16.6724	1.24e-06	0.00108	GCCCCGCCCCGCCTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	5	19	-	16.6724	1.24e-06	0.00108	GCCCCGCCCCGCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	25	39	-	16.6724	1.24e-06	0.00108	GCCCCGCCCACATCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	25	39	-	16.6724	1.24e-06	0.00108	GCCCCGCCCACATCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	27	40	+	14.2273	1.24e-06	0.0382	TGATGACGTAAGCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	27	40	+	14.2273	1.24e-06	0.0382	TGATGACGTAAGCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	67	84	-	2.51316	1.24e-06	0.00958	GAAAGGAAGCCGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	67	84	-	2.51316	1.24e-06	0.00958	GAAAGGAAGCCGGGAGGG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	98	112	-	16.3621	1.25e-06	0.0155	CAACGCCTCCGCACC
Klf12	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	33	47	+	17.082	1.25e-06	0.0228	GACCACGCCCTGGCC
Klf12	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	68	82	-	17.082	1.25e-06	0.0228	GACCACGCCCTGGCC
CTCF	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	35	53	-	16.4918	1.25e-06	0.0254	CGGGCGGCAGGGGGCGGCC
CTCF	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	62	80	+	16.4918	1.25e-06	0.0254	CGGGCGGCAGGGGGCGGCC
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	25	39	-	16.5584	1.25e-06	0.142	AGTGAATGATTAACT
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	25	39	-	16.5584	1.25e-06	0.142	AGTGAATGATTAACT
SP3	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	15	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	24	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	24	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	28	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	28	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	36	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	36	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	38	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	45	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	45	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	45	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	45	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	99	+	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	16	26	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	29	39	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	29	39	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	30	40	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	34	44	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	41	51	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	49	59	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	49	59	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	49	59	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	49	59	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
SP3	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	77	87	-	15.6341	1.25e-06	0.00324	GCCCCGCCCAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	20	40	+	16.3878	1.25e-06	0.00171	AGAGGAGGCGGGGAGGAGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	32	52	+	16.3878	1.25e-06	0.00171	GGAGGTGGGGGGAAGAGTAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	56	76	+	16.3878	1.25e-06	0.00171	CGGGGAGGGCGGGGAGGGAGC
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	39	59	-	16.3878	1.25e-06	0.00171	CGGGGAGGGCGGGGAGGGAGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	66	86	-	16.3878	1.25e-06	0.00171	AAAAGAGGAGGAGGAGAGGAG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	-	15.6909	1.25e-06	0.0893	CGCCCGGGGGCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	48	62	-	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	48	62	-	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	48	62	-	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	48	62	-	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	67	81	-	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	26	+	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	26	+	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	48	+	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	48	+	16.6552	1.26e-06	0.00109	GCCCCTCCCCGCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	41	+	14.9083	1.26e-06	0.02	CACCCCCCCCCCCCCCCCCC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	37	50	-	16.7241	1.26e-06	0.0267	GCTGTCATGGCAAC
Creb5	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	74	-	17.4545	1.26e-06	0.0663	CATGACGTCACA
Creb5	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	79	-	17.4545	1.26e-06	0.0663	CATGACGTCACA
Creb5	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	47	+	17.4545	1.26e-06	0.0663	CATGACGTCACA
Creb5	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	52	+	17.4545	1.26e-06	0.0663	CATGACGTCACA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	+	15.5102	1.26e-06	0.0857	TGCCCCCGGGCG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	38	52	+	16.5818	1.26e-06	0.0875	CGCCCCCCGCAGGGA
SOX8	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	21	36	+	5.63636	1.26e-06	1	AACAATGTTGAGTTTT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	26	39	+	16.7308	1.26e-06	0.00229	TCTCCTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	44	+	16.7308	1.26e-06	0.00229	GGCCCGCCCACTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	44	+	16.7308	1.26e-06	0.00229	GGCCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	55	68	+	16.7308	1.26e-06	0.00229	TCTCCTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	55	68	+	16.7308	1.26e-06	0.00229	TCTCCTCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	68	84	-	15.7455	1.27e-06	0.0036	TCAGCCCCGCCCCTCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	68	84	-	15.7455	1.27e-06	0.0036	TCAGCCCCGCCCCTCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	38	52	-	16.3276	1.27e-06	0.0155	CTCCGCCCCCGCCCG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	38	52	-	16.3276	1.27e-06	0.0155	CTCCGCCCCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	38	52	-	16.3276	1.27e-06	0.0155	CTCCGCCCCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	38	52	-	16.3276	1.27e-06	0.0155	CTCCGCCCCCGCCCG
NFYB	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	61	75	+	16.6923	1.27e-06	0.0437	CCAGCAGCCAATCAG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	-	15.6182	1.27e-06	0.054	TCCCCTCGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	-	15.6182	1.27e-06	0.054	TCCCCTCGGGCA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	12	25	-	17.0172	1.27e-06	0.00945	CGCCACGCCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	12	25	-	17.0172	1.27e-06	0.00945	CGCCACGCCCACAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	12	25	-	17.0172	1.27e-06	0.00945	CGCCACGCCCACAC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	14	24	-	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	14	24	-	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	14	24	-	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	44	54	+	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	44	54	+	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	46	56	+	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	91	101	+	16.4182	1.27e-06	0.00237	GCGCTTGCGCA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	13	27	-	16.6379	1.28e-06	0.0011	CCCCCGCCCCCGTTC
SP2	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	27	41	-	16.6379	1.28e-06	0.0011	GCCCCGCCCCAAGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	56	70	-	16.3103	1.28e-06	0.0155	CCACGCCCCCGCCTG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	+	16.8197	1.28e-06	0.0372	AGCCCCCGGGGCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	101	114	-	16.7115	1.28e-06	0.00232	CTCCCACCCCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	64	74	+	16.2182	1.28e-06	0.0164	GCGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	51	-	16.2182	1.28e-06	0.0164	GCGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	51	-	16.2182	1.28e-06	0.0164	GCGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	51	-	16.2182	1.28e-06	0.0164	GCGCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	51	-	16.2182	1.28e-06	0.0164	GCGCTTCCGGC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	33	52	-	14.8532	1.28e-06	0.02	CCCCCCACCCCCACCCCCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	3	19	+	15.7091	1.29e-06	0.0036	CCTGCCACGCCCCCCCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	19	35	-	15.7091	1.29e-06	0.0036	TGGGCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	39	55	+	15.7091	1.29e-06	0.0036	CCTGCCACGCCCCCCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	39	55	+	15.7091	1.29e-06	0.0036	CCTGCCACGCCCCCCCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	56	72	+	15.7091	1.29e-06	0.0036	TGGGCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	66	82	-	15.7091	1.29e-06	0.0036	CCTGCCACGCCCCCCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	66	82	-	15.7091	1.29e-06	0.0036	CCTGCCACGCCCCCCCG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	78	96	-	16.4426	1.29e-06	0.0254	CCGCCGCTAGGTGGCAGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	59	79	-	16.3469	1.29e-06	0.00175	GGAGGAGATGGGGGTGGGGTG
ELF3	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	64	76	+	16.9483	1.29e-06	0.0804	GAGCCGGAAGTGA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	8	21	+	14.439	1.29e-06	0.0847	GGGGTGAGAGGTCA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	8	21	+	14.439	1.29e-06	0.0847	GGGGTGAGAGGTCA
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	+	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	-	17.8364	1.29e-06	0.0759	GCTATAAATAGT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	52	-	16.7541	1.3e-06	0.0586	AAGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	52	-	16.7541	1.3e-06	0.0586	AAGCCGGAAGTG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	2	19	+	16.7927	1.3e-06	0.0192	CGGCCGCCGATTGGCTGG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	27	44	-	16.7927	1.3e-06	0.0192	CGGCCGCCGATTGGCTGG
MTF1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	17	30	-	15.7683	1.3e-06	0.286	TTAGCACACGCCAC
NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	-	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	-	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	+	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	+	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	+	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	+	17.5102	1.3e-06	0.11	GATGACTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	+	17.5102	1.3e-06	0.11	GATGACTCATG
ETV2	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	33	-	16.8689	1.3e-06	0.118	GACCGGAAATA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	63	+	16.6207	1.3e-06	0.00112	GCCCCTCCCTCCCGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	31	44	-	16.6923	1.3e-06	0.00234	GCACCGCCCCCTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	97	110	-	16.6923	1.3e-06	0.00234	CCCCCGCCGCCGCT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	30	50	+	16.3265	1.31e-06	0.00176	GGATGTGGGGAAGGGGAAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	12	32	-	16.3265	1.31e-06	0.00176	GGAGCAGCGGGAGGAGGGGTC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	83	103	+	16.3265	1.31e-06	0.00176	GGAGCAGCGGGAGGAGGGGTC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	65	85	-	16.3265	1.31e-06	0.00176	GGATGTGGGGAAGGGGAAGGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	66	77	+	16.2857	1.31e-06	0.192	CGCGACCACCGT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	66	77	+	16.2857	1.31e-06	0.192	CGCGACCACCGT
Stat4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	36	49	-	16.0862	1.31e-06	0.0732	CTTCTGGGAAAGCA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	36	49	-	16.0862	1.31e-06	0.0732	CTTCTGGGAAAGCA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	36	49	-	16.0862	1.31e-06	0.0732	CTTCTGGGAAAGCA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	36	49	-	16.0862	1.31e-06	0.0732	CTTCTGGGAAAGCA
ELF1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	15	26	+	17.0727	1.31e-06	0.0421	GACCCGGAAGTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	31	44	-	16.9828	1.31e-06	0.00947	AGACACGCCCACCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	31	44	-	16.9828	1.31e-06	0.00947	AGACACGCCCACCA
KLF14	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	39	52	-	16.9828	1.31e-06	0.00947	AGCCCCGCCCCCTC
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	+	16.6881	1.32e-06	0.197	TGACACCTGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	+	16.6881	1.32e-06	0.197	TGACACCTGTCA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	+	16.6881	1.32e-06	0.197	TGACACCTGTCA
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	47	61	-	16.6034	1.32e-06	0.00113	CTCCCGCCCTCCCGC
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	55	69	-	16.6034	1.32e-06	0.00113	CTCCCGCCCTCCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	69	83	-	16.6034	1.32e-06	0.00113	GCCCCTCCCCTGTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	69	83	-	16.6034	1.32e-06	0.00113	GCCCCTCCCCTGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	69	83	-	16.6034	1.32e-06	0.00113	GCCCCTCCCCTGTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	28	+	16.6034	1.32e-06	0.00113	GCCCCGCCCACCTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	28	+	16.6034	1.32e-06	0.00113	GCCCCGCCCACCTTC
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	46	60	+	16.6034	1.32e-06	0.00113	CTCCCGCCCTCCCGC
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	54	68	+	16.6034	1.32e-06	0.00113	CTCCCGCCCTCCCGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	64	78	+	16.2414	1.32e-06	0.0155	CCCCGCCCCCGCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	64	78	+	16.2414	1.32e-06	0.0155	CCCCGCCCCCGCGGC
SPI1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	23	36	+	15.3636	1.32e-06	0.0486	GGAAACCGGAAGTA
SPI1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	92	-	15.3636	1.32e-06	0.0486	GGAAACCGGAAGTA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	34	53	-	14.7798	1.32e-06	0.02	ACCCCCCACCCCCACCCCCA
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	24	39	+	15.1091	1.32e-06	0.0628	GAGGTCAGAGTTCAGA
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	53	68	-	15.1091	1.32e-06	0.0628	GAGGTCAGAGTTCAGA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	20	37	+	2.30263	1.33e-06	0.0101	GGGAGGAGAGGAGGCAGG
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	26	40	-	16.6053	1.33e-06	0.0633	GAGGTGACTCAGCTG
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	55	64	+	12	1.33e-06	0.0659	GCCACGCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	34	43	-	16.7615	1.33e-06	0.00876	GCCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	35	44	-	16.7615	1.33e-06	0.00876	GCCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	35	44	-	16.7615	1.33e-06	0.00876	GCCCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	71	80	-	16.7615	1.33e-06	0.00876	GCCCCCCCAC
Klf4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	12	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	15	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	25	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	25	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	17	26	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	17	26	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	30	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	22	31	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	33	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	33	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	36	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	36	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	36	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	29	38	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	46	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	45	54	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	47	56	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	47	56	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	62	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	69	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	61	70	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	61	70	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	61	70	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	61	70	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	61	70	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	74	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	74	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	74	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	74	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	89	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	89	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	89	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	89	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	102	111	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	102	111	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	102	111	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	102	111	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	112	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	104	113	-	16.4286	1.33e-06	0.00384	AGGGCGGGGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	35	44	+	16.7615	1.33e-06	0.00876	GCCCCCCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	72	81	+	16.7615	1.33e-06	0.00876	GCCCCCCCAC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	1	10	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	1	10	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	1	10	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	2	11	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	3	12	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	3	12	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	3	12	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	3	12	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	6	15	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	11	20	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	20	29	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	20	29	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	20	29	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	20	29	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	20	29	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	21	30	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	26	35	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	26	35	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	30	39	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	31	40	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	31	40	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	31	40	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	31	40	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	38	47	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	43	52	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	45	54	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	46	55	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	52	61	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	58	67	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	58	67	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	100	109	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	100	109	+	16.4286	1.33e-06	0.00384	AGGGCGGGGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	6	19	-	16.6731	1.33e-06	0.00238	CTCCCGCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	37	50	-	16.6731	1.33e-06	0.00238	CTCCCGCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	47	60	-	16.6731	1.33e-06	0.00238	CTCCCGCCTCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	19	+	16.6731	1.33e-06	0.00238	CCCCCGCCCCCTTA
IRF2	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	9	26	+	15.9633	1.33e-06	0.236	CAAAAGTGAAAGTAAGAG
RXRG	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	31	44	+	14.4255	1.34e-06	0.102	TGGGTCAAAGGGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	-	16.9483	1.34e-06	0.0343	AGCCCCCAGGGCG
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	11	25	-	16.5862	1.34e-06	0.00113	CCCCCGCCCCCCACA
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	45	59	-	16.5862	1.34e-06	0.00113	GCCCCTCCCCACCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	16	+	16.5862	1.34e-06	0.00113	CCCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	16	+	16.5862	1.34e-06	0.00113	CCCCCGCCCCGCCCG
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	70	+	16.5862	1.34e-06	0.00113	GCCCCTCCCCACCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	80	+	16.5862	1.34e-06	0.00113	CCCCCGCCCCCCACA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	84	94	+	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	84	94	+	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	84	94	+	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	84	94	+	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	77	87	-	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	77	87	-	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	77	87	-	16.4426	1.34e-06	0.013	CCGGAAGTGCA
Creb5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	41	-	17.4	1.34e-06	0.0663	TATGACGTCATT
Creb5	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	103	114	-	17.4	1.34e-06	0.0663	TATGACGTCATT
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	12	+	17.4	1.34e-06	0.0663	TATGACGTCATT
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	12	+	17.4	1.34e-06	0.0663	TATGACGTCATT
Creb5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	85	+	17.4	1.34e-06	0.0663	TATGACGTCATT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	13	33	+	16.2857	1.34e-06	0.00181	GGAGGAGGAGTCACGAGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	86	106	+	16.2857	1.34e-06	0.00181	AGAGCAGGATGGAGAGGAGAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	38	55	-	2.26316	1.34e-06	0.0101	GGAGGGAGGGAGGGAGGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	33	43	-	16.6034	1.34e-06	0.00315	AACACGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	56	66	+	16.6034	1.34e-06	0.00315	AACACGCCCCC
Znf423	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	49	63	-	17.5281	1.35e-06	0.0882	CGCCCCTAGGGTTGA
Znf423	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	49	63	-	17.5281	1.35e-06	0.0882	CGCCCCTAGGGTTGA
Znf423	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	52	66	+	17.5281	1.35e-06	0.0882	CGCCCCTAGGGTTGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	16	32	-	15.6	1.35e-06	0.00375	GCAGCCCCGCCCCCCGG
HOXD11	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	59	-	15.507	1.35e-06	0.43	GTCGTAAAAA
HOXD11	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	59	-	15.507	1.35e-06	0.43	GTCGTAAAAA
HOXD11	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	56	65	+	15.507	1.35e-06	0.43	GTCGTAAAAA
EGR3	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	37	51	-	16.2069	1.35e-06	0.0155	CCCCGCCCCCGCCAC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	82	96	-	16.2069	1.35e-06	0.0155	CCCCGCCCCCGCCAC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	10	24	+	16.2069	1.35e-06	0.0155	CCCCGCCCCCGCCAC
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	19	33	+	16.2069	1.35e-06	0.0155	CCCCGCCCCCGCCAC
EGR3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	34	48	+	16.2069	1.35e-06	0.0155	CCCCGCCCCCGCCAC
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	28	41	-	16.6538	1.35e-06	0.00239	GGCCCGCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	61	74	+	16.6538	1.35e-06	0.00239	CCCCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	61	74	+	16.6538	1.35e-06	0.00239	CCCCCTCCTCCTCC
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	1	13	+	17.0606	1.35e-06	0.196	TGGGGAAGCCCCT
SP4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	17	33	+	15.5818	1.36e-06	0.00376	GTGACCACGCCCACGGC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	13	-	15.4483	1.36e-06	0.129	GGGCACGTGCCT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	13	-	15.4483	1.36e-06	0.129	GGGCACGTGCCT
ID4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	80	-	14.6393	1.36e-06	0.351	TGCACCTGTC
ID4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	80	-	14.6393	1.36e-06	0.351	TGCACCTGTC
Ascl2	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	33	-	16.2286	1.36e-06	0.14	AGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	58	-	16.2286	1.36e-06	0.14	AGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	58	-	16.2286	1.36e-06	0.14	AGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	106	-	16.2286	1.36e-06	0.14	AGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	106	-	16.2286	1.36e-06	0.14	AGCAGCTGCC
ETV6	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	18	27	+	16.1346	1.36e-06	0.0363	CGCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	52	61	+	16.1346	1.36e-06	0.0363	CGCGGAAGTG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	28	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	37	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	41	50	+	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	60	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	72	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	72	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	74	-	13.0714	1.36e-06	0.0268	AGTCACGTGG
Mitf	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	78	87	+	13.0714	1.36e-06	0.0268	AGTCACGTGG
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	68	77	+	15.1111	1.36e-06	0.093	GGGGATTTCC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	27	36	+	14.1212	1.36e-06	0.0401	GTAGGGGGAA
ID4	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	35	44	+	14.6393	1.36e-06	0.351	TGCACCTGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	91	+	16.2286	1.36e-06	0.14	AGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	91	+	16.2286	1.36e-06	0.14	AGCAGCTGCC
ETV6	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	54	63	-	16.1346	1.36e-06	0.0363	CGCGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	88	97	-	16.1346	1.36e-06	0.0363	CGCGGAAGTG
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	104	113	+	14.0385	1.36e-06	0.153	AACACCTGCG
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	104	113	+	14.0385	1.36e-06	0.153	AACACCTGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	-	16.931	1.36e-06	0.0343	CGCCCCGGGGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	+	16.931	1.36e-06	0.0343	CGCCCTGGGGGCT
SP2	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	14	28	-	16.569	1.36e-06	0.00114	CTCCCGCCCCACCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	23	37	-	16.569	1.36e-06	0.00114	GCTCCGCCCCACCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	23	37	-	16.569	1.36e-06	0.00114	GCTCCGCCCCACCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	23	37	-	16.569	1.36e-06	0.00114	GCTCCGCCCCACCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	23	37	-	16.569	1.36e-06	0.00114	GCTCCGCCCCACCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	37	+	16.569	1.36e-06	0.00114	ACCCCACCCCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	41	+	16.569	1.36e-06	0.00114	GCCCCGCCCTCGGCA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	45	+	16.569	1.36e-06	0.00114	GGCCCGCCCACTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	45	+	16.569	1.36e-06	0.00114	GGCCCGCCCACTCCT
RFX4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	-	16.5909	1.36e-06	0.0315	GGTCTCCGTGGCAACG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	63	83	+	16.2653	1.36e-06	0.00183	GGGAGAGGGAGGAGGGGAAGC
NFYB	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	21	35	+	16.6346	1.36e-06	0.0437	CTTCGGGCCAATCAG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	31	46	+	16.4	1.37e-06	0.0258	CCCCGCCCCCCCACCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	32	47	-	16.4	1.37e-06	0.0258	CCCCGCCCCCCCACCT
EGR4	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	68	83	+	16.4	1.37e-06	0.0258	CCCCGCCCCCCCACCT
EGR4	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	69	84	-	16.4	1.37e-06	0.0258	CCCCGCCCCCCCACCT
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	32	50	+	16.3443	1.37e-06	0.0254	CAGACGCTAGGTGGCGCTG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	32	50	+	16.3443	1.37e-06	0.0254	CAGACGCTAGGTGGCGCTG
JUNB	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	15	25	+	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	16	26	+	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	16	26	+	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	71	81	+	15.6735	1.37e-06	0.0541	CGGTGACTCAG
ELF5	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	22	32	+	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	94	104	+	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	21	-	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	21	-	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	21	-	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	21	-	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
ELF5	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	93	-	14.6364	1.37e-06	0.0729	ACCCGGAAGTC
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	83	93	-	16.9091	1.37e-06	0.14	ACCCGGATGCA
JUNB	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	14	24	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	34	44	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	34	44	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	90	100	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	97	107	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	97	107	-	15.6735	1.37e-06	0.0541	CGGTGACTCAG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	74	87	+	14.2805	1.37e-06	0.0847	CGGGTCAGAGTTCA
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	74	87	+	14.2805	1.37e-06	0.0847	CGGGTCAGAGTTCA
MEF2D	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	+	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	-	16.8909	1.37e-06	0.0806	GCTATAAATAGT
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	21	31	+	15.9388	1.38e-06	0.0728	TTTCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	21	31	+	15.9388	1.38e-06	0.0728	TTTCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	32	42	-	15.9388	1.38e-06	0.0728	TTTCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	32	42	-	15.9388	1.38e-06	0.0728	TTTCTGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	63	83	-	16.2449	1.38e-06	0.00185	AGAGAAGGGAGGAGGGGAGAC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	12	26	-	16.5517	1.38e-06	0.00115	GCCCCGCCCCGGCAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	29	43	-	16.5517	1.38e-06	0.00115	CCTCCGCCTCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	29	43	-	16.5517	1.38e-06	0.00115	CCTCCGCCTCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	29	43	-	16.5517	1.38e-06	0.00115	CCTCCGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	29	43	-	16.5517	1.38e-06	0.00115	CCTCCGCCTCCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	35	49	-	16.5517	1.38e-06	0.00115	GCCCCGCCCCGGCAC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	80	+	16.5517	1.38e-06	0.00115	GCCCCGCCCCGGCAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	84	+	16.5517	1.38e-06	0.00115	GCCCCGCCCCGCTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	84	+	16.5517	1.38e-06	0.00115	GCCCCGCCCCGCTCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	87	+	16.5517	1.38e-06	0.00115	CCCCCGCCTCCTGTC
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	103	+	16.5517	1.38e-06	0.00115	GCCCCGCCCCGGCAC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	57	67	+	16.2069	1.38e-06	0.0163	CGGCGGGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	57	67	+	16.2069	1.38e-06	0.0163	CGGCGGGAAGG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	60	73	-	16.4545	1.38e-06	0.00701	GACGCCTGGGCCTG
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	36	46	-	16.0816	1.38e-06	0.0314	ATCATGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	36	46	-	16.0816	1.38e-06	0.0314	ATCATGTGACC
USF2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	14	+	16.0816	1.38e-06	0.0314	ATCATGTGACC
IRF8	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	75	88	-	13.5455	1.38e-06	0.125	AGGAAACTGAAACT
Creb5	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	39	-	17.2727	1.39e-06	0.0663	GATGACGTCACG
Creb5	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	87	+	17.2727	1.39e-06	0.0663	GATGACGTCACG
Stat4	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	5	18	+	16.0345	1.39e-06	0.0732	CTTCCAGGAACCGG
Stat4	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	30	43	+	16.0345	1.39e-06	0.0732	CTTCCAGGAACCGG
Stat4	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	72	85	-	16.0345	1.39e-06	0.0732	CTTCCAGGAACCGG
Stat4	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	97	110	-	16.0345	1.39e-06	0.0732	CTTCCAGGAACCGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	43	62	-	14.6697	1.39e-06	0.02	AAACAAAACAACAACAACAA
SP3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	71	81	+	15.561	1.39e-06	0.00356	GCCACACCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	86	+	15.561	1.39e-06	0.00356	GCCACACCCAC
SP3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	34	44	-	15.561	1.39e-06	0.00356	GCCACACCCAC
MAFF	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	12	29	+	16.2444	1.39e-06	0.448	GCCTAGTCAGCAGAATGG
CREB3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	42	55	+	16.8571	1.4e-06	0.161	CAGCCACGTCATCC
SP4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	82	98	-	15.5091	1.4e-06	0.00386	CAGGCCCCGCCCCACAT
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	1	15	+	16.6061	1.4e-06	0.128	GGCTATGAGTCAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	1	15	+	16.6061	1.4e-06	0.128	GGCTATGAGTCAGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	38	52	-	16.5345	1.4e-06	0.00115	GCCCCGCCTCGCGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	69	83	-	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	46	+	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	46	+	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	46	+	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	46	+	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	46	+	16.5345	1.4e-06	0.00115	TCCCCGCCCCCCTGT
RFX3	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	-	16.4848	1.4e-06	0.0231	CGCTGTCATGGCAACG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	37	+	16.2245	1.4e-06	0.00187	GGGGGCGGGGGGGAGGGGTAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	32	52	+	16.2245	1.4e-06	0.00187	GAAGGAGGCGGCGGCGGTGGG
EHF	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	21	32	+	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	22	-	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	22	-	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	22	-	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	22	-	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	93	104	+	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
EHF	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	94	-	16.6393	1.4e-06	0.0586	CACCCGGAAGTC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	+	16.8793	1.4e-06	0.0343	CGCCCCGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	+	16.8793	1.4e-06	0.0343	CGCCCCGGGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	-	16.8793	1.4e-06	0.0343	CGCCCTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	-	16.8793	1.4e-06	0.0343	CGCCCCGGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	-	16.8793	1.4e-06	0.0343	CGCCCCGGGGGCG
SP1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	13	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	18	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	18	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	23	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	23	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	23	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	23	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	25	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	25	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	28	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	28	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	15	25	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	15	25	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	17	27	-	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	20	30	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	20	30	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	48	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	28	38	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	30	40	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	30	40	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	62	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	70	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	53	63	-	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	87	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	91	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	91	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	95	+	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	98	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	98	+	16.5577	1.4e-06	0.00157	CCCCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	87	97	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	102	112	-	16.5577	1.4e-06	0.00157	ACCCCGCCCCC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	36	53	+	2.13158	1.4e-06	0.0105	GGAGGCGAGGCAGGAAGA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	34	47	-	16.4394	1.4e-06	0.00701	CCCGGCCGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	34	47	-	16.4394	1.4e-06	0.00701	CCCGGCCGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	69	82	-	16.4394	1.4e-06	0.00701	CCCGGCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	69	82	-	16.4394	1.4e-06	0.00701	CCCGGCCGGGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	27	41	+	16.1207	1.41e-06	0.0155	CCCCGCCCACCCACC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	27	41	+	16.1207	1.41e-06	0.0155	CCCCGCCCACCCACC
SP4	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	14	30	-	15.4909	1.41e-06	0.00386	GACGCCCCGCCCCTTGC
SP4	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	85	101	+	15.4909	1.41e-06	0.00386	GACGCCCCGCCCCTTGC
XBP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	16	29	+	16.7885	1.41e-06	0.446	CCTGACACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	16	29	+	16.7885	1.41e-06	0.446	CCTGACACGTCATC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	58	68	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	58	68	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	61	71	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	61	71	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	61	71	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	61	71	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	61	71	-	16.4	1.41e-06	0.00256	ACGCCTGCGCA
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	30	43	+	16.569	1.41e-06	0.0267	GTTGCCATAGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	30	43	+	16.569	1.41e-06	0.0267	GTTGCCATAGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	30	43	+	16.569	1.41e-06	0.0267	GTTGCCATAGTAAC
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	31	44	+	16.8793	1.42e-06	0.00952	GGCCACGCCTCCTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	71	84	-	16.8793	1.42e-06	0.00952	GGCCACGCCTCCTC
RUNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	6	16	-	14.6552	1.42e-06	0.115	CCCTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	6	16	-	14.6552	1.42e-06	0.115	CCCTGTGGTTT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	29	40	-	16.0789	1.42e-06	0.00873	ACCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	29	40	-	16.0789	1.42e-06	0.00873	ACCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	49	+	16.0789	1.42e-06	0.00873	ACCCCGCCCCCC
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	2	22	+	16.2041	1.42e-06	0.0019	GAGGGAGGGGCGGAAAGAGCA
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	93	113	-	16.2041	1.42e-06	0.0019	GAGGGAGGGGCGGAAAGAGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	+	15.5273	1.42e-06	0.054	TCCCCCCGGGCG
E2F7	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	70	83	+	11.0984	1.42e-06	0.416	CTTTCCCGCCAGTA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	14	31	-	2.09211	1.43e-06	0.0105	GGGAGGGAAGCAGGAGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	84	101	+	2.09211	1.43e-06	0.0105	GGGAGGGAAGCAGGAGGG
HNF4G	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	94	108	-	16.25	1.43e-06	0.196	GTAGTCCAAAGGCCA
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	9	23	+	16.8525	1.43e-06	0.0237	GACCACGCCCCGCCC
ELF3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	78	90	-	16.7414	1.43e-06	0.0804	AAACCGGAAGTAG
ELF3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	25	37	+	16.7414	1.43e-06	0.0804	AAACCGGAAGTAG
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	12	29	-	16.6463	1.43e-06	0.0201	CGAGTTCCGATTGGTTCT
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	12	29	-	16.6463	1.43e-06	0.0201	CGAGTTCCGATTGGTTCT
NFYA	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	86	103	+	16.6463	1.43e-06	0.0201	CGAGTTCCGATTGGTTCT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	13	26	-	16.4242	1.43e-06	0.00703	CAGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	13	26	-	16.4242	1.43e-06	0.00703	CAGGGCGGGGCCTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	23	36	-	16.8621	1.43e-06	0.00952	GGCCACGCCCCTGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	23	36	-	16.8621	1.43e-06	0.00952	GGCCACGCCCCTGC
SCRT1	WILDTYPE__Enhancer.noflip.NA__chr1:158146798..158146912,-__2027.1.0.0	89	103	+	16.8689	1.44e-06	0.494	CTGCAACAGGTAGCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	28	42	-	16.0862	1.44e-06	0.0155	ACACGCCCCCGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	57	71	+	16.0862	1.44e-06	0.0155	ACACGCCCCCGCCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	43	63	-	16.1837	1.44e-06	0.00192	GGGGGTGGGGTGGGGGGAGTG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	62	82	+	16.5968	1.44e-06	0.0685	TTCCGCTTTCGGTTTTTCCTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	17	31	+	16.5	1.44e-06	0.00118	GCTCCGCCCCGTCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	44	+	16.5	1.44e-06	0.00118	GTCCCGCCCACCGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	56	+	16.5	1.44e-06	0.00118	GTCCCGCCCTCGTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	56	+	16.5	1.44e-06	0.00118	GTCCCGCCCTCGTGC
Myog	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	81	91	-	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	81	91	-	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	34	+	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	59	+	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	59	+	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	107	+	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	107	+	15.4694	1.45e-06	0.0428	GGCAGCTGCTG
PLAG1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	23	36	+	15.9184	1.45e-06	0.0465	GGGGCCCGCGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	-	16.8621	1.45e-06	0.0343	CGCCCCCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	-	16.8621	1.45e-06	0.0343	CGCCCCCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	+	16.8621	1.45e-06	0.0343	CGCCCCCGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	+	16.8621	1.45e-06	0.0343	CGCCCCCGGGGCG
SP4	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	27	43	-	15.4182	1.45e-06	0.00394	CAGGCCCCGCCCAGTCC
SP4	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	72	88	+	15.4182	1.45e-06	0.00394	CAGGCCCCGCCCAGTCC
Nkx2-5(var.2)	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	71	81	-	15.6364	1.45e-06	0.451	AGCCACTCAGG
Nkx2-5(var.2)	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	34	44	+	15.6364	1.45e-06	0.451	AGCCACTCAGG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	34	47	-	16.5577	1.46e-06	0.00255	ACCCCACCCCCGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	34	47	-	16.5577	1.46e-06	0.00255	ACCCCACCCCCGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	34	47	-	16.5577	1.46e-06	0.00255	ACCCCACCCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	34	47	-	16.5577	1.46e-06	0.00255	ACCCCACCCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	66	79	-	16.5577	1.46e-06	0.00255	GGGCCACCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	66	79	-	16.5577	1.46e-06	0.00255	GGGCCACCCCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	81	+	16.5577	1.46e-06	0.00255	ACCCCACCCCCGCT
BATF3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	22	35	+	13.7424	1.46e-06	0.042	TGATGACGTCTCCG
BATF3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	80	93	-	13.7424	1.46e-06	0.042	TGATGACGTCTCCG
USF1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	38	+	16.2857	1.46e-06	0.0283	CTCACGTGACC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	7	27	+	16.1633	1.46e-06	0.00194	GGGGGAGAGGCGGGGGAAGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	25	45	+	16.1633	1.46e-06	0.00194	GAGGGCGGGGTGGGAGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	24	44	-	16.1633	1.46e-06	0.00194	AAAGGAAAGGGGGGGGGAAAA
Zfx	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	38	51	+	16.4091	1.46e-06	0.00703	GCCGCTGCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	64	77	-	16.4091	1.46e-06	0.00703	GCCGCTGCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	64	77	-	16.4091	1.46e-06	0.00703	GCCGCTGCGGCCTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	11	25	-	16.4828	1.46e-06	0.00119	GCCCCGCCCCAGCAC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	12	26	-	16.4828	1.46e-06	0.00119	GCCCCGCCCCAGCAC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	12	26	-	16.4828	1.46e-06	0.00119	GCCCCGCCCCAGCAC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	12	26	-	16.4828	1.46e-06	0.00119	GCCCCGCCCCAGCAC
SP2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	25	39	-	16.4828	1.46e-06	0.00119	GCCCCGCCCCACTCT
SP2	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	51	65	-	16.4828	1.46e-06	0.00119	GCTCCGCCTCCTCAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	54	68	-	16.4828	1.46e-06	0.00119	TCTCCGCCCCCTCGC
SP2	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	99	113	-	16.4828	1.46e-06	0.00119	GGCCCTCCCCCCGGC
SP2	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	2	16	+	16.4828	1.46e-06	0.00119	GGCCCTCCCCCCGGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	20	34	+	16.4828	1.46e-06	0.00119	GGCCCGCCTCTGTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	63	+	16.4828	1.46e-06	0.00119	GCCCCGCCCCGCGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	63	+	16.4828	1.46e-06	0.00119	GCCCCGCCCCGCGAC
SP2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	90	+	16.4828	1.46e-06	0.00119	GCCCCGCCCCACTCT
Nr2f6(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	3	17	-	10.3714	1.47e-06	0.268	AGGATCACAAGGTCA
Nr2f6(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	99	113	+	10.3714	1.47e-06	0.268	AGGATCACAAGGTCA
Nr2f6(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	99	113	+	10.3714	1.47e-06	0.268	AGGATCACAAGGTCA
Nr2f6(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	99	113	+	10.3714	1.47e-06	0.268	AGGATCACAAGGTCA
Nr2f6(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	99	113	+	10.3714	1.47e-06	0.268	AGGATCACAAGGTCA
NFYB	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	18	32	+	16.5769	1.47e-06	0.0437	GGCCTGACCAATCAG
NFYB	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	50	64	+	16.5769	1.47e-06	0.0437	GGCCTGACCAATCAG
NFYB	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	51	65	-	16.5769	1.47e-06	0.0437	GGCCTGACCAATCAG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	11	25	-	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	11	25	-	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	11	25	-	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	11	25	-	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	64	78	-	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	37	51	+	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
EGR3	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	90	104	+	16.0517	1.47e-06	0.0155	CTACGCCCCCACACT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	65	76	+	16.7869	1.47e-06	0.0343	AAGCCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	65	76	+	16.7869	1.47e-06	0.0343	AAGCCGGAAGTA
RFX4	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	18	33	+	16.4848	1.47e-06	0.0329	AGTTACCATGGCAATG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	21	35	-	16.5574	1.47e-06	0.167	ATGACTCAGCAGCCG
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	21	35	-	16.5574	1.47e-06	0.167	ATGACTCAGCAGCCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	21	31	+	16.5517	1.47e-06	0.0586	CCGCCCACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	54	64	+	16.5517	1.47e-06	0.0586	CCGCCCACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	54	64	+	16.5517	1.47e-06	0.0586	CCGCCCACGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	15	25	-	16.5517	1.47e-06	0.0586	CCGCCCACGCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	5	16	+	16.0395	1.47e-06	0.00873	GCCACGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	5	16	+	16.0395	1.47e-06	0.00873	GCCACGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	5	16	+	16.0395	1.47e-06	0.00873	GCCACGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	5	16	+	16.0395	1.47e-06	0.00873	GCCACGCCCCGT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	5	16	+	16.0395	1.47e-06	0.00873	GCCACGCCCCGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	8	22	-	16.2714	1.48e-06	0.0565	CGCCACCCGCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	8	22	-	16.2714	1.48e-06	0.0565	CGCCACCCGCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	8	22	-	16.2714	1.48e-06	0.0565	CGCCACCCGCCGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	8	22	-	16.2714	1.48e-06	0.0565	CGCCACCCGCCGCGC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	11	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	11	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	13	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	13	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	18	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	18	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	22	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	22	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	23	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	23	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	23	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	23	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	5	15	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	5	15	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	8	18	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	28	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	9	19	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	29	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	9	19	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	9	19	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	9	19	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	10	20	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	10	20	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	11	21	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	11	21	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	11	21	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	11	21	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	11	21	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	32	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	33	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	33	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	13	23	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	15	25	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	15	25	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	16	26	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	16	26	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	17	27	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	17	27	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	17	27	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	18	28	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	38	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	38	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	38	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	20	30	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	40	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	21	31	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	42	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	42	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	42	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	43	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	43	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	43	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	43	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	23	33	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	43	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	45	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	25	35	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	25	35	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	45	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	45	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	45	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	45	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	46	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	26	36	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	26	36	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	28	38	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	28	38	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	30	40	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	30	40	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	32	42	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	32	42	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	32	42	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	32	42	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	32	42	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	33	43	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	53	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	34	44	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	35	45	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	35	45	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	37	47	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	37	47	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	37	47	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	37	47	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	38	48	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	59	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	39	49	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	59	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	42	52	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	42	52	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	42	52	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	42	52	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	45	55	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	45	55	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	66	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	66	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	66	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	66	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	66	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	49	59	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	75	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	76	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	57	67	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	58	68	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	58	68	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	58	68	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	80	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	80	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	62	72	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	82	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	83	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	69	79	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	70	80	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	71	81	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	73	83	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	75	85	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	75	85	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	77	87	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	99	+	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	87	97	-	16.4038	1.48e-06	0.00157	GCCCCGCCCCG
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	84	97	+	16.4828	1.48e-06	0.0267	AGTGCCCTGGCAAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	54	67	-	16.5385	1.48e-06	0.00257	TCCCCGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	54	67	-	16.5385	1.48e-06	0.00257	TCCCCGCCTCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	54	67	-	16.5385	1.48e-06	0.00257	TCCCCGCCTCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	54	67	-	16.5385	1.48e-06	0.00257	TCCCCGCCTCCGCG
ESR1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	2	18	-	13.4848	1.48e-06	0.264	TAGGTCGCGGCGACATG
ESR1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	97	113	+	13.4848	1.48e-06	0.264	TAGGTCGCGGCGACATG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	46	60	-	16.4655	1.48e-06	0.00119	CCCCCGCCTCCCGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	58	72	-	16.4655	1.48e-06	0.00119	GTCCCGCCCCAGTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	58	72	-	16.4655	1.48e-06	0.00119	GTCCCGCCCCAGTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	98	112	-	16.4655	1.48e-06	0.00119	CGCCCGCCCCTCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	98	112	-	16.4655	1.48e-06	0.00119	CGCCCGCCCCTCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	98	112	-	16.4655	1.48e-06	0.00119	CGCCCGCCCCTCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	98	112	-	16.4655	1.48e-06	0.00119	CGCCCGCCCCTCTCC
SP2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	3	17	+	16.4655	1.48e-06	0.00119	CGCCCGCCCCTCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	89	+	16.4655	1.48e-06	0.00119	GCTCCGCCCCCTGGT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	27	44	+	1.97368	1.48e-06	0.0105	GGCAGGAAGGAGGGAGAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	71	88	-	1.97368	1.48e-06	0.0105	GGCAGGAAGGAGGGAGAG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	50	63	-	15.8673	1.49e-06	0.0465	GGGGCCCAAGGCGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	28	41	+	15.8673	1.49e-06	0.0465	GGGGCCCAAGGCGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	94	107	+	15.8673	1.49e-06	0.0465	GGGGCCCAAGCGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	94	107	+	15.8673	1.49e-06	0.0465	GGGGCCCAAGCGGG
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	44	63	+	14.5046	1.49e-06	0.02	ACTCCCCCCACCCCACCCCC
HINFP	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	92	103	-	16.4394	1.49e-06	0.0516	CGGCGTCCGCTG
ELK4	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	49	59	+	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	21	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	38	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	66	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	66	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	114	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	114	-	16.1273	1.49e-06	0.0164	TCACTTCCGGT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	+	15.6	1.49e-06	0.0391	CGCCTCAGGCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	37	51	-	16.2571	1.49e-06	0.0565	AACCTCCCGCGGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	37	51	-	16.2571	1.49e-06	0.0565	AACCTCCCGCGGCGT
ERG	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.4545	1.49e-06	0.0511	ACCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.4545	1.49e-06	0.0511	ACCGGAAGTC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	22	32	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	22	32	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	22	32	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	22	32	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	55	65	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	55	65	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	55	65	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	55	65	+	16.1552	1.49e-06	0.0163	GCGCGGGAAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	68	84	-	15.3455	1.49e-06	0.00394	GAGGCCCCGCCCCGTCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	24	41	-	1.94737	1.5e-06	0.0105	GGGAGGGAGGGGGGCAGG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	65	79	+	16.7727	1.5e-06	0.0594	ACAGTTTCTTTTTCT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	40	+	14.4862	1.5e-06	0.02	CCACCCCCCCCCCCCCGCCC
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	1	13	-	16.9242	1.5e-06	0.196	AGGGGCTTCCCCA
Bcl6	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	65	78	+	16.2258	1.5e-06	0.11	CTTCCTGGACAGCT
Bcl6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	96	109	+	16.2258	1.5e-06	0.11	CTTCCTGGACAGCT
Bcl6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	96	109	+	16.2258	1.5e-06	0.11	CTTCCTGGACAGCT
Bcl6	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	37	50	-	16.2258	1.5e-06	0.11	CTTCCTGGACAGCT
NRF1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	51	61	-	16.3636	1.5e-06	0.00273	GCGCCCGCGCA
SP2	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	23	37	-	16.4483	1.5e-06	0.00121	TTCCCGCCTCCCCTC
EGR1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	19	32	-	16.5192	1.5e-06	0.00259	CCTCCGCCTCCACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	21	34	+	16.5192	1.5e-06	0.00259	CCGCCTCCTCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	83	96	+	16.5192	1.5e-06	0.00259	CCTCCGCCTCCACC
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	30	47	+	16.5732	1.5e-06	0.0201	CGGCCGCTGATTGGAGGA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	30	47	+	16.5732	1.5e-06	0.0201	CGGCCGCTGATTGGAGGA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	30	47	+	16.5732	1.5e-06	0.0201	CGGCCGCTGATTGGAGGA
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	13	32	-	14.4771	1.51e-06	0.02	CCCCTCACCAACCAATCCCA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	40	50	+	16.6909	1.51e-06	0.14	ACCCGGATGCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	40	50	+	16.6909	1.51e-06	0.14	ACCCGGATGCG
SPDEF	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	65	75	-	16.6909	1.51e-06	0.14	ACCCGGATGCG
Gabpa	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	67	77	+	16.3934	1.51e-06	0.0144	CCGGAAGTGAG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	16	29	+	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	16	29	+	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	16	29	+	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	16	29	+	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	93	-	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	93	-	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	93	-	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	93	-	14.9636	1.51e-06	0.0486	TAAAACAGGAAGTT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	65	83	+	16.1803	1.51e-06	0.0254	TGGCCGGCAGGGGCCGCTC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	65	83	+	16.1803	1.51e-06	0.0254	TGGCCGGCAGGGGCCGCTC
Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	28	-	14.0366	1.51e-06	0.0847	GGGTTCAAAGCTCA
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	28	-	14.0366	1.51e-06	0.0847	GGGTTCAAAGCTCA
Rxra	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	87	100	+	14.0366	1.51e-06	0.0847	GGGTTCAAAGCTCA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	42	-	16.5	1.51e-06	0.0701	CGGGGTCAGAAGTCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	16	32	-	15.3091	1.52e-06	0.00394	CCGGCCCCGCCCTCTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	16	32	-	15.3091	1.52e-06	0.00394	CCGGCCCCGCCCTCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	16	32	-	15.3091	1.52e-06	0.00394	CCGGCCCCGCCCTCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	16	32	-	15.3091	1.52e-06	0.00394	CCGGCCCCGCCCTCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	16	32	-	15.3091	1.52e-06	0.00394	CCGGCCCCGCCCTCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	22	38	-	15.3091	1.52e-06	0.00394	CCGGCCACGCCCCTGCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	22	38	-	15.3091	1.52e-06	0.00394	CCGGCCACGCCCCTGCA
RFX5	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	+	15.5172	1.52e-06	0.0272	CGTTGCCATGACAGCG
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	27	+	16.1556	1.52e-06	0.448	GCTGACTCAGCACCTTAC
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	27	+	16.1556	1.52e-06	0.448	GCTGACTCAGCACCTTAC
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	36	53	+	1.90789	1.52e-06	0.0105	GGGAGGGAGGAGGGCGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	47	64	+	1.90789	1.52e-06	0.0105	GGGCGGGAGGGAGGCAGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	51	68	-	1.90789	1.52e-06	0.0105	GGGCGGGAGGGAGGCAGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	62	79	-	1.90789	1.52e-06	0.0105	GGGAGGGAGGAGGGCGGG
RFX4	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	+	16.4394	1.52e-06	0.0329	CGTTGCCATGACAGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	43	-	16.102	1.52e-06	0.00202	GGGGGGGGGGGGGGGGGGGGT
EGR1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	33	46	-	16.5	1.52e-06	0.00261	CTCCCTCCCCCGGC
EGR1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	69	82	+	16.5	1.52e-06	0.00261	CTCCCTCCCCCGGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	82	95	+	16.5	1.52e-06	0.00261	CTCCCTCCCCCGGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	95	+	16.5	1.52e-06	0.00261	GCCCCTCCCCCGTC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	9	26	-	15.431	1.52e-06	0.0458	CGACCACGCCCCTAGATG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	48	+	15.6327	1.52e-06	0.0498	GGCAGCTGCCCCG
Myod1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	34	46	-	15.6327	1.52e-06	0.0498	GGCAGCTGCCCCG
Myod1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	81	+	15.6327	1.52e-06	0.0498	GGCAGCTGCCCCG
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	8	21	+	15.9848	1.52e-06	0.15	GGGGTGAGAGGTCA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	8	21	+	15.9848	1.52e-06	0.15	GGGGTGAGAGGTCA
Zfx	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	24	37	-	16.3788	1.52e-06	0.00727	CCCACCCAGGCCTG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	6	24	-	16.1639	1.53e-06	0.0254	CGGCCGCCAGGTGCCGCTG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	6	24	-	16.1639	1.53e-06	0.0254	CGGCCGCCAGGTGCCGCTG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	6	24	-	16.1639	1.53e-06	0.0254	CGGCCGCCAGGTGCCGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	6	24	-	16.1639	1.53e-06	0.0254	CGGCCGCCAGGTGCCGCTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	24	34	-	15.449	1.53e-06	0.0832	GACAGCTGGAG
Tcf12	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	76	86	-	15.449	1.53e-06	0.0832	GACAGCTGGAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	29	39	+	15.449	1.53e-06	0.0832	GACAGCTGGAG
Tcf12	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	81	91	+	15.449	1.53e-06	0.0832	GACAGCTGGAG
KLF14	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	28	41	-	16.7586	1.53e-06	0.00952	GGCCCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	61	74	+	16.7586	1.53e-06	0.00952	GGCCCCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	61	74	+	16.7586	1.53e-06	0.00952	GGCCCCGCCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	61	74	+	16.7586	1.53e-06	0.00952	GGCCCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	61	74	+	16.7586	1.53e-06	0.00952	GGCCCCGCCCCTTC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	29	42	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	29	42	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	29	42	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	29	42	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	29	42	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	73	86	+	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	70	83	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	70	83	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	70	83	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	70	83	-	16.4483	1.53e-06	0.0267	GTCTCCATGGCAGC
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	63	76	-	16.2586	1.53e-06	0.835	GTTATGCAAATGAC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	19	38	+	14.4312	1.54e-06	0.02	GACCACCCCACCCCCCCCGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	19	38	+	14.4312	1.54e-06	0.02	GACCACCCCACCCCCCCCGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	19	38	+	14.4312	1.54e-06	0.02	GACCACCCCACCCCCCCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	19	38	+	14.4312	1.54e-06	0.02	GACCACCCCACCCCCCCCGC
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	23	38	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	23	38	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	23	38	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	23	38	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	23	38	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	55	70	+	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	45	60	-	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	45	60	-	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	45	60	-	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
Hnf4a	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	77	92	-	14.7455	1.54e-06	0.0628	AAGGTCGAAGTTCATC
SP4	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	3	19	-	15.2727	1.54e-06	0.00398	CGGGCCCCGCCCCCAGA
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	14	+	17.0612	1.54e-06	0.0524	TATGACGTCACA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	49	-	17.0612	1.54e-06	0.0524	TATGACGTCACA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	49	-	17.0612	1.54e-06	0.0524	TATGACGTCACA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	77	+	17.0612	1.54e-06	0.0524	TATGACGTCACA
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	101	112	-	17.0612	1.54e-06	0.0524	TATGACGTCACA
GATA1::TAL1	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	47	64	+	16.4	1.54e-06	0.349	ATTATCAGAGCCCGGCAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	7	24	-	1.86842	1.55e-06	0.0106	GGAAGGGAAGGAGGTGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	29	42	-	16.4808	1.55e-06	0.00264	CCCACACCCACGCC
RFX2	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	84	99	-	15.6143	1.55e-06	0.0292	GGTTGCTAGGGCAACG
KLF16	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	15	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	24	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	24	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	28	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	28	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	36	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	36	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	16	26	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	38	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	45	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	45	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	45	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	45	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	29	39	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	29	39	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	30	40	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	34	44	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	41	51	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	49	59	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	49	59	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	49	59	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	49	59	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	77	87	-	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	99	+	16.5345	1.55e-06	0.00337	GCCCCGCCCAC
TP73	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	+	16.4808	1.55e-06	0.195	GACAAGTTGAGACTTGTT
Klf12	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	58	72	-	16.7049	1.55e-06	0.0237	GGCCACGCCCCCGCC
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	63	75	+	16.5172	1.55e-06	0.232	GTCATTTGCATAA
Foxa2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	14	+	15.88	1.55e-06	0.439	TGTTTACATTGT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	22	+	14.4037	1.55e-06	0.02	CCCCCCCCCCCCCCCACCGT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	+	15.5636	1.56e-06	0.0893	TCCCCCGGGGCA
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	-	15.5636	1.56e-06	0.0893	TCCCCCGGGGCA
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	39	53	-	16.4138	1.56e-06	0.00124	TCCCCACCCCCGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	41	55	-	16.4138	1.56e-06	0.00124	CTCCCGCCCCCGCTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	27	+	16.4138	1.56e-06	0.00124	CCCCCGCCCCCGTCA
SP2	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	74	+	16.4138	1.56e-06	0.00124	CTCCCGCCCCCGCTG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	3	22	-	14.3945	1.56e-06	0.02	ACCCCCACCAAGCACACACC
Klf12	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	26	40	+	16.6885	1.56e-06	0.0237	GGCCACACCCAAACC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	75	89	-	16.6885	1.56e-06	0.0237	GGCCACACCCAAACC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	75	89	-	16.6885	1.56e-06	0.0237	GGCCACACCCAAACC
KLF14	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	27	40	+	16.7241	1.56e-06	0.00952	GGCCCCGCCCACCA
KLF14	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	14	27	-	16.7241	1.56e-06	0.00952	GGCCCCGCCCACCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	39	52	-	16.7241	1.56e-06	0.00952	GGCCCCGCCCACCA
KLF14	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	75	88	-	16.7241	1.56e-06	0.00952	GGCCCCGCCCACCA
KLF14	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	88	101	+	16.7241	1.56e-06	0.00952	GGCCCCGCCCACCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	7	23	+	15.2364	1.56e-06	0.00401	GAAGCTCCGCCCCCTGG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	7	23	+	15.2364	1.56e-06	0.00401	GAAGCTCCGCCCCCTGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	6	26	-	16.0612	1.57e-06	0.00203	GGGGCAGGGTGGAGGAGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	6	26	-	16.0612	1.57e-06	0.00203	GGGGCAGGGTGGAGGAGTGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	33	53	+	16.0612	1.57e-06	0.00203	GGGGCAGGGTGGAGGAGTGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	35	55	+	16.0612	1.57e-06	0.00203	GAAGCCGCGGGAGAAGGAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	63	83	+	16.0612	1.57e-06	0.00203	AGTGGAGGGGGGTGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	62	82	-	16.0612	1.57e-06	0.00203	AGTGGAGGGGGGTGGGTGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	62	82	-	16.0612	1.57e-06	0.00203	GGGGCAGGGTGGAGGAGTGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	62	82	-	16.0612	1.57e-06	0.00203	AGTGGAGGGGGGTGGGTGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	89	109	+	16.0612	1.57e-06	0.00203	GGGGCAGGGTGGAGGAGTGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	73	93	-	16.0612	1.57e-06	0.00203	TGGGGAGAACAGGGAAGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	73	93	-	16.0612	1.57e-06	0.00203	TGGGGAGAACAGGGAAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	73	93	-	16.0612	1.57e-06	0.00203	TGGGGAGAACAGGGAAGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	73	93	-	16.0612	1.57e-06	0.00203	TGGGGAGAACAGGGAAGAGGG
FOS	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	-	15.617	1.57e-06	0.0862	GCTGACTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	+	15.617	1.57e-06	0.0862	GCTGACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	45	55	+	15.617	1.57e-06	0.0862	TGTGACTCATG
FOS	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	45	55	+	15.617	1.57e-06	0.0862	TGTGACTCATG
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	88	108	-	14.2551	1.57e-06	0.0892	TCCAGCCCCAGGGACAGCAAG
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	88	108	-	14.2551	1.57e-06	0.0892	TCCAGCCCCAGGGACAGCAAG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	29	47	-	16.1148	1.57e-06	0.0254	CGAGCAGCAGAGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	29	47	-	16.1148	1.57e-06	0.0254	CGAGCAGCAGAGGGCGGGG
CTCF	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	68	86	+	16.1148	1.57e-06	0.0254	CGAGCAGCAGAGGGCGGGG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	29	39	+	15.6531	1.57e-06	0.0597	TGGTGACTCAG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	83	93	+	14.6	1.57e-06	0.0729	ACCAGGAAGTG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	75	-	14.6	1.57e-06	0.0729	ACCAGGAAGTG
FOSL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	25	35	-	15.9091	1.57e-06	0.0585	GGATGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	25	35	-	15.9091	1.57e-06	0.0585	GGATGAGTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	69	79	-	15.9091	1.57e-06	0.0585	GGGTGAGTCAG
PLAG1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	44	57	-	15.7449	1.57e-06	0.0465	GAGGGGAAAGGGGG
MAFK	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	13	27	+	16.1111	1.57e-06	0.567	CCTAGTCAGCAGAAT
GATA1::TAL1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	29	46	-	16.3818	1.58e-06	0.349	CTTATCTCTGGTTCCCAG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	1	15	-	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	1	15	-	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	1	15	-	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	1	15	-	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	53	67	-	16.3966	1.58e-06	0.00124	GCCCCACCCCCTGCA
SP2	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	95	109	-	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	20	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	20	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	20	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	20	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	20	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	41	+	16.3966	1.58e-06	0.00124	GCCCCGCCCTCACAC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	41	+	16.3966	1.58e-06	0.00124	GCCCCGCCCTCACAC
SP2	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	114	+	16.3966	1.58e-06	0.00124	GCTCCGCCCCCGACG
KLF5	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	14	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	19	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	23	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	23	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	27	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	27	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	10	19	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	10	19	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	10	19	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	35	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	17	26	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	35	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	37	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	44	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	44	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	44	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	44	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	30	39	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	30	39	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	31	40	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	31	40	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	35	44	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	35	44	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	35	44	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	42	51	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	42	51	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	50	59	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	50	59	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	50	59	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	50	59	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	55	64	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	80	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	80	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	84	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	78	87	-	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	98	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	105	+	16.2041	1.58e-06	0.00219	GCCCCGCCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	40	54	+	15.6847	1.58e-06	0.124	GTGTGGGAAAGGGCA
Pparg::Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	40	54	+	15.6847	1.58e-06	0.124	GTGTGGGAAAGGGCA
Pparg::Rxra	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	62	76	-	15.6847	1.58e-06	0.124	GTGTGGGAAAGGGCA
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	49	-	17.0909	1.58e-06	0.0663	TATGACGTCACA
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	49	-	17.0909	1.58e-06	0.0663	TATGACGTCACA
Creb5	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	101	112	-	17.0909	1.58e-06	0.0663	TATGACGTCACA
Creb5	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	14	+	17.0909	1.58e-06	0.0663	TATGACGTCACA
Creb5	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	77	+	17.0909	1.58e-06	0.0663	TATGACGTCACA
EGR3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	79	93	-	15.9138	1.58e-06	0.0157	CTCCGCCCCCGCCTG
EGR3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	22	36	+	15.9138	1.58e-06	0.0157	CTCCGCCCCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	53	67	+	15.9138	1.58e-06	0.0157	CTCCGCCCCCGCCTG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	53	67	+	15.9138	1.58e-06	0.0157	CTCCGCCCCCGCCTG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	73	87	-	16.3818	1.58e-06	0.188	AGAGAGTGAGAGTGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	-	16.6557	1.58e-06	0.0372	CGCCCCCCGGGCA
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	53	69	+	15.2	1.58e-06	0.00402	CCTGCCCCGCCCCCTGC
NFYB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	51	65	+	16.5	1.58e-06	0.0437	GCATGGGCCAATCAC
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	51	65	+	16.5	1.58e-06	0.0437	GCATGGGCCAATCAC
NFYB	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	50	64	-	16.5	1.58e-06	0.0437	GCATGGGCCAATCAC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	+	15.4184	1.59e-06	0.0857	TCCCCCGGGGCA
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	-	15.4184	1.59e-06	0.0857	TCCCCCGGGGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	21	41	+	16.0408	1.59e-06	0.00205	GGTGGAGGATGTGGCGGAGGC
ZNF263	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	74	94	-	16.0408	1.59e-06	0.00205	GGTGGAGGATGTGGCGGAGGC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	11	29	+	16.0984	1.59e-06	0.0254	GAACCAGCAGGTGGCATCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	17	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	17	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	18	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	22	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	27	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	27	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	34	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	18	28	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	22	32	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	49	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	39	49	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	62	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	62	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	62	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	62	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	44	54	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	47	57	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	47	57	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	47	57	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	47	57	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	71	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	76	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	66	76	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	97	+	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	81	91	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	93	103	-	16.2885	1.59e-06	0.00164	TCCCCGCCCCT
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	65	83	-	16.1613	1.6e-06	0.101	GAAGGCAGCCGAGCATGCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	18	32	-	16.3793	1.6e-06	0.00126	GCCCCGCCCCCATGA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	18	32	-	16.3793	1.6e-06	0.00126	GCCCCGCCCCCATGA
SP2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	62	76	-	16.3793	1.6e-06	0.00126	ACCCCGCCCCACCCC
ELK4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	51	61	+	16.0182	1.6e-06	0.0164	CCGCTTCCGGG
ELK4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	64	-	16.0182	1.6e-06	0.0164	CCGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	72	-	16.0182	1.6e-06	0.0164	CCGCTTCCGGG
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	+	16.3636	1.6e-06	0.0329	GGTCGCCCTGACAACG
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	+	16.3636	1.6e-06	0.0329	GGTCGCCCTGACAACG
ELF1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	25	36	+	16.6909	1.6e-06	0.0421	AGCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	90	-	16.6909	1.6e-06	0.0421	AGCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	90	-	16.6909	1.6e-06	0.0421	AGCCCGGAAGTG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	-	15.5636	1.6e-06	0.0391	CGCCTGAGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	+	15.5636	1.6e-06	0.0391	CGCCTGAGGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	-	15.5636	1.6e-06	0.0391	CGCCTGAGGCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	+	15.5636	1.6e-06	0.0391	CGCCTGAGGCG
EGR1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	15	28	-	16.4423	1.6e-06	0.00272	CCTCCGCCCCCTTC
EGR1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	15	28	-	16.4423	1.6e-06	0.00272	CCTCCGCCCCCTTC
EGR1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	15	28	-	16.4423	1.6e-06	0.00272	CCTCCGCCCCCTTC
EGR1	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	101	+	16.4423	1.6e-06	0.00272	CCTCCGCCCCCTTC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	-	17.3061	1.61e-06	0.11	AATGACTCATG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	7	24	-	1.77632	1.61e-06	0.0108	GGGAGGGAGGGAGGGAGC
NFYB	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	15	29	-	16.4808	1.61e-06	0.0437	GAACTGGCCAATCGG
NFYB	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	86	100	+	16.4808	1.61e-06	0.0437	GAACTGGCCAATCGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	23	33	+	16.1207	1.61e-06	0.0163	GGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	23	33	+	16.1207	1.61e-06	0.0163	GGGCGGGAGGA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	15	25	-	16.1207	1.61e-06	0.0163	GGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	39	49	-	16.1207	1.61e-06	0.0163	GGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	39	49	-	16.1207	1.61e-06	0.0163	GGGCGGGAGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	36	56	+	16.0204	1.61e-06	0.00207	GAAGAAGGGCGGGCGGGTGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	59	79	-	16.0204	1.61e-06	0.00207	GAAGAAGGGCGGGCGGGTGGG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	97	110	-	16.3333	1.61e-06	0.00752	GGCCCCGGGGCCTG
JUND	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	33	43	-	16.4894	1.61e-06	0.0801	AGTGACTCATG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	5	15	+	15.4309	1.62e-06	0.00406	CCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	5	15	+	15.4309	1.62e-06	0.00406	CCCACGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	57	67	+	15.4309	1.62e-06	0.00406	CCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	48	58	-	15.4309	1.62e-06	0.00406	CCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	48	58	-	15.4309	1.62e-06	0.00406	CCCACGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	100	110	-	15.4309	1.62e-06	0.00406	CCCACGCCCCT
KLF14	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	29	42	+	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	20	33	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	20	33	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	20	33	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	20	33	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	20	33	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	58	71	+	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
KLF14	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	73	86	-	16.6724	1.62e-06	0.00952	GGCCCCGCCCCCCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	15.8364	1.62e-06	0.0765	GCCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	15.8364	1.62e-06	0.0765	GCCACGTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	+	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	+	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	+	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	-	16.4138	1.62e-06	0.0521	CGCAGCTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	+	16.4138	1.62e-06	0.0521	CGCAGCTGCC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	11	24	+	14.7818	1.62e-06	0.0486	CAAAACAGGAAGTG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	12	31	-	14.3028	1.62e-06	0.0204	CCCACCCCCACCCCCACCAA
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	11	26	-	14.2414	1.62e-06	0.231	TTCCCATAAAGCCCCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	11	26	-	14.2414	1.62e-06	0.231	TTCCCATAAAGCCCCG
SP4	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	97	113	-	15.1455	1.62e-06	0.00402	TAGGCCACGCCTCTTAT
SP4	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	2	18	+	15.1455	1.62e-06	0.00402	TAGGCCACGCCTCTTAT
ATF7	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	27	40	-	17.1429	1.62e-06	0.0669	TGATGACGTCACGA
ATF7	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	75	88	+	17.1429	1.62e-06	0.0669	TGATGACGTCACGA
SP2	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	25	39	-	16.3621	1.63e-06	0.00127	TCTCCGCCTCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	32	46	-	16.3621	1.63e-06	0.00127	GCCCCTCCTTCCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	32	46	-	16.3621	1.63e-06	0.00127	GCCCCTCCTTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	49	+	16.3621	1.63e-06	0.00127	GCCCCGCCCACAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	49	+	16.3621	1.63e-06	0.00127	GCCCCGCCCACAGCG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	12	-	17.0204	1.63e-06	0.0524	AATGACGTCATA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	12	-	17.0204	1.63e-06	0.0524	AATGACGTCATA
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	41	+	17.0204	1.63e-06	0.0524	AATGACGTCATA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	85	-	17.0204	1.63e-06	0.0524	AATGACGTCATA
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	103	114	+	17.0204	1.63e-06	0.0524	AATGACGTCATA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	67	81	+	16.6066	1.63e-06	0.0237	TGCCACGCCCCTCAT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	67	81	+	16.6066	1.63e-06	0.0237	TGCCACGCCCCTCAT
Stat4	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	57	70	+	15.9138	1.63e-06	0.0732	CTTCCAGGAAGCGT
Stat4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	45	58	-	15.9138	1.63e-06	0.0732	CTTCCAGGAAGCGT
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	45	58	-	15.9138	1.63e-06	0.0732	CTTCCAGGAAGCGT
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	45	58	-	15.9138	1.63e-06	0.0732	CTTCCAGGAAGCGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	9	26	+	1.73684	1.63e-06	0.0108	GGAATGGAGGAAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	9	26	+	1.73684	1.63e-06	0.0108	GGAATGGAGGAAGGGAAG
RFX2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	+	15.5	1.63e-06	0.0301	CGTTGCCATGACAGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	17	33	-	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	17	33	-	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
SP4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	84	100	-	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	15	31	+	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	15	31	+	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	43	59	+	15.1273	1.63e-06	0.00402	CACGCCCCGCCCCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	43	59	+	15.1273	1.63e-06	0.00402	CACGCCCCGCCCCCGGC
SP4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	82	98	+	15.1273	1.63e-06	0.00402	GCGACCCCGCCCCCTGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	22	42	-	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	22	42	-	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	22	42	-	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	22	42	-	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	22	42	-	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	36	56	-	16	1.63e-06	0.00207	GAAGAGGGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	36	56	-	16	1.63e-06	0.00207	GAAGAGGGAGGAGGAGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	51	71	-	16	1.63e-06	0.00207	GGAGCCGGGGGCGGAGGGAAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	73	93	+	16	1.63e-06	0.00207	GGGGGCGGGGAAGGAAGATGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	68	82	+	16.4394	1.64e-06	0.0187	CTCTCGCGAGACGAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	68	82	+	16.4394	1.64e-06	0.0187	CTCTCGCGAGACGAG
STAT1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	67	77	+	16.5636	1.64e-06	0.148	CTTCCGGGAAA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	87	100	-	14.7636	1.64e-06	0.0486	AGAATGGGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	87	100	-	14.7636	1.64e-06	0.0486	AGAATGGGGAAGTT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	41	55	-	16.2545	1.64e-06	0.0875	GCCACCCCGCTGCGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	95	109	-	16.2545	1.64e-06	0.0875	GCCACCCCGCTGCGA
NFATC3	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	103	112	-	12.899	1.64e-06	0.908	ATTTTCCATT
NFATC1	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	103	112	-	11.748	1.64e-06	0.954	ATTTTCCATT
NFAT5	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	103	112	-	13.7258	1.64e-06	1	ATTTTCCATT
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	27	37	-	16.3091	1.64e-06	0.00294	GAGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	27	37	-	16.3091	1.64e-06	0.00294	GAGCCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	39	49	-	16.3091	1.64e-06	0.00294	GAGCCTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	66	76	+	16.3091	1.64e-06	0.00294	GAGCCTGCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	35	48	-	16.4038	1.64e-06	0.00276	CTTCCTCCCACGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	35	48	-	16.4038	1.64e-06	0.00276	CTTCCTCCCACGCC
EGR1	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	67	80	+	16.4038	1.64e-06	0.00276	CTTCCTCCCACGCC
SP4	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	55	71	-	15.1091	1.64e-06	0.00402	AACGCCCCGCCCCCAGA
SP4	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	44	60	+	15.1091	1.64e-06	0.00402	AACGCCCCGCCCCCAGA
Klf1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	5	15	+	16.5455	1.65e-06	0.0269	GGCCACGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	18	28	-	16.5455	1.65e-06	0.0269	GGCCACGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	45	55	+	16.5455	1.65e-06	0.0269	GGCCACGCCCA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	50	+	16.3448	1.65e-06	0.00129	TCCCCGCCCCCACCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	50	+	16.3448	1.65e-06	0.00129	TCCCCGCCCCCACCA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	100	+	15.449	1.65e-06	0.0452	AACAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	100	+	15.449	1.65e-06	0.0452	AACAGCTGCAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	95	112	+	1.69737	1.65e-06	0.0108	GGAAGTGGGGAAAGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	95	112	+	1.69737	1.65e-06	0.0108	GGAAGTGGGGAAAGCAGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	79	97	+	16.0328	1.65e-06	0.0254	TGGCCAGTGGAGGTCGCCC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	79	97	+	16.0328	1.65e-06	0.0254	TGGCCAGTGGAGGTCGCCC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	57	75	-	16.0328	1.65e-06	0.0254	TGGCCAGTGGAGGTCGCCC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	+	16.2182	1.65e-06	0.0625	AGTGACTCATC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	68	77	+	16.9592	1.65e-06	0.12	GGGGATTTCC
ETV5	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	16.4286	1.65e-06	0.042	ACCGGAAGTA
ELK3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	16.2414	1.65e-06	0.0454	ACCGGAAGTA
FLI1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	16.3404	1.65e-06	0.0603	ACCGGAAATG
FLI1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	16.3404	1.65e-06	0.0603	ACCGGAAATG
FEV	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.7115	1.65e-06	0.059	ACCGGAAGTA
ETS1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.569	1.65e-06	0.0577	ACCGGAAGTA
ELK1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ETV5	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV5	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	13.8182	1.65e-06	0.0501	ACCGGAAGTA
ETV4	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	15.0172	1.65e-06	0.062	ACCGGAAGTG
ETV3	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.662	1.65e-06	0.0449	ACCGGAAGTA
ETV1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	15.4545	1.65e-06	0.0567	ACCGGAAGTG
ERF	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	16.4286	1.65e-06	0.042	ACCGGAAGTA
ELK3	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	16.2414	1.65e-06	0.0454	ACCGGAAGTA
TFEB	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	15.6538	1.65e-06	0.0484	GTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	16.9808	1.65e-06	0.0457	ATCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	16.9808	1.65e-06	0.0457	ATCACGTGAC
FLI1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	16.3404	1.65e-06	0.0603	ACCGGAAATG
FLI1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	16.3404	1.65e-06	0.0603	ACCGGAAATG
FEV	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.7115	1.65e-06	0.059	ACCGGAAGTA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ETS1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.569	1.65e-06	0.0577	ACCGGAAGTA
ELK1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	17.1064	1.65e-06	0.0372	ACCGGAAGTA
TFE3	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	14.3469	1.65e-06	0.037	ACCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	14.3469	1.65e-06	0.037	ACCACGTGAC
TFEB	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	15.6538	1.65e-06	0.0484	GTCACGTGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	1	21	+	15.9796	1.65e-06	0.00209	GGAAGAAGAGGAGGGGAAAAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	1	21	+	15.9796	1.65e-06	0.00209	GGAAGAAGAGGAGGGGAAAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	37	57	+	15.9796	1.65e-06	0.00209	AAAGGAGGAACTGAAAGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	37	57	+	15.9796	1.65e-06	0.00209	AAAGGAGGAACTGAAAGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	57	77	+	15.9796	1.65e-06	0.00209	GGTGGAGGGAAGTGAGGAACA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	10	23	-	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	23	36	+	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	23	36	+	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	23	36	-	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	79	92	+	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	79	92	-	16.303	1.66e-06	0.00752	CCCCCCGGGGCCTG
RFX4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	+	16.3182	1.66e-06	0.0329	CGTCGCCTTGGAAACG
RFX4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	-	16.3182	1.66e-06	0.0329	CGTCGCCTTGGAAACG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	65	76	+	16.6545	1.66e-06	0.0421	AAGCCGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	65	76	+	16.6545	1.66e-06	0.0421	AAGCCGGAAGTA
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	23	36	+	16.2623	1.66e-06	0.176	CGCCCCCCACAAAG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	74	87	+	15.8636	1.66e-06	0.15	AGGGTCAGAGTTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	74	87	+	15.8636	1.66e-06	0.15	AGGGTCAGAGTTCA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	1	15	-	16.0571	1.67e-06	0.0602	CGCCTCCCGCCGCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	17	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	17	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	18	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	18	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	10	19	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	10	19	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	10	19	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	10	19	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	11	20	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	11	20	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	19	28	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	20	29	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	32	41	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	33	42	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	34	43	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	34	43	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	41	50	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	41	50	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	41	50	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	57	66	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	58	67	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	68	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	60	69	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	61	70	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	63	72	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	64	73	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	85	94	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	103	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	95	104	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	95	104	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	96	105	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	96	105	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	97	106	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	107	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	108	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	100	109	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	101	110	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	102	111	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	103	112	-	16.5505	1.67e-06	0.00876	CCCCCCCCCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	11.0806	1.67e-06	0.0189	GGCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	11.0806	1.67e-06	0.0189	GGCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	11.0806	1.67e-06	0.0189	GGCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	11.0806	1.67e-06	0.0189	GGCACGTGCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	12	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	12	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	12	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	12	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	12	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	4	13	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	13	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	13	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	4	13	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	4	13	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	14	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	14	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	5	14	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	14	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	14	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	6	15	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	15	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	15	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	6	15	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	15	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	16	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	7	16	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	16	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	7	16	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	7	16	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	8	17	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	8	17	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	8	17	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	8	17	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	17	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	18	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	18	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	9	18	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	19	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	19	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	10	19	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	10	19	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	11	20	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	20	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	11	20	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	12	21	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	12	21	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	13	22	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	21	30	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	21	30	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	21	30	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	33	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	33	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	34	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	34	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	35	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	26	35	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	27	36	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	36	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	27	36	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	37	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	38	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	29	38	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	39	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	39	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	31	40	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	31	40	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	41	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	32	41	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	33	42	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	42	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	34	43	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	34	43	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	42	51	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	43	52	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	45	54	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	55	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	47	56	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	48	57	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	49	58	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	56	65	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	56	65	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	56	65	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	56	65	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	57	66	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	57	66	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	67	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	86	95	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	87	96	+	16.5505	1.67e-06	0.00876	CCCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	29	45	-	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	29	45	-	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP4	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	74	90	-	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	25	41	+	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	25	41	+	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP4	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	70	86	+	15.0727	1.67e-06	0.00402	CAGGCTCCGCCCCTTCG
SP2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	23	37	+	16.3276	1.67e-06	0.0013	CTCCCTCCCCCCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	40	54	-	16.3276	1.67e-06	0.0013	GCCCCACCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	60	74	-	16.3276	1.67e-06	0.0013	GCTCCTCCCCCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	60	74	-	16.3276	1.67e-06	0.0013	GCTCCTCCCCCCGCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	78	92	-	16.3276	1.67e-06	0.0013	CTCCCTCCCCCCGCC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	11	25	-	16.4091	1.67e-06	0.0187	GCCTCGCGAGGCCTC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	43	57	+	16.1711	1.67e-06	0.0701	ACGGTGAGTCAGCGG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	+	15.9423	1.68e-06	0.0521	CGCCTCAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	+	15.9423	1.68e-06	0.0521	CGCCTCAGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	-	15.9423	1.68e-06	0.0521	CGCCTCAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	-	15.9423	1.68e-06	0.0521	CGCCTCAGGCG
RFX4	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	+	16.303	1.68e-06	0.0329	GGTTGCCGTGGCGACT
ATF7	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	2	15	-	17.1	1.68e-06	0.0669	CTGTGACGTCATAA
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	37	50	+	17.1	1.68e-06	0.0669	CTGTGACGTCATAA
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	37	50	+	17.1	1.68e-06	0.0669	CTGTGACGTCATAA
ATF7	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	65	78	-	17.1	1.68e-06	0.0669	CTGTGACGTCATAA
ATF7	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	100	113	+	17.1	1.68e-06	0.0669	CTGTGACGTCATAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	32	52	+	15.9592	1.68e-06	0.0021	GGGTGAAGAGGAGGCAGGGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	19	39	-	15.9592	1.68e-06	0.0021	GGGGGAGGGCTGGGCTGGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	21	41	-	15.9592	1.68e-06	0.0021	GGGGCAGGGCGGCGAGGTGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	24	44	-	15.9592	1.68e-06	0.0021	AAAGGAAAGGGGGGGGGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	63	83	-	15.9592	1.68e-06	0.0021	GGGTGAAGAGGAGGCAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	63	83	-	15.9592	1.68e-06	0.0021	GGGTGAAGAGGAGGCAGGGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	12	29	-	1.65789	1.68e-06	0.0108	GGAGGGAGGGAGGGTGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	86	103	+	1.65789	1.68e-06	0.0108	GGAGGGAGGGAGGGTGGG
SP4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	26	42	-	15.0545	1.68e-06	0.00403	AAGGCCACGCCCCGCTT
CTCF	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	48	66	+	16	1.68e-06	0.0254	GGGCCGCCAGGAGGCGCGG
SP1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	5	15	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	14	24	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	14	24	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	28	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	28	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	26	36	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	26	36	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	16	26	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	28	38	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	45	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	45	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	45	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	45	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	29	39	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	29	39	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	30	40	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	34	44	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	41	51	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	49	59	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	49	59	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	49	59	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	49	59	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	77	87	-	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	89	99	+	16.2692	1.69e-06	0.00168	GCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	33	43	-	16.4483	1.69e-06	0.00365	GACACGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	33	43	-	16.4483	1.69e-06	0.00365	GACACGCCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	5	19	+	16.3103	1.69e-06	0.0013	TTCCCGCCCCTTCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	5	19	+	16.3103	1.69e-06	0.0013	TTCCCGCCCCTTCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	5	19	+	16.3103	1.69e-06	0.0013	TTCCCGCCCCTTCTC
SP2	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	34	48	-	16.3103	1.69e-06	0.0013	GGCCCGCCTCTGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	67	81	+	16.3103	1.69e-06	0.0013	GGCCCGCCTCTGCCT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	-	16.9636	1.69e-06	0.0663	GATTACGTCACC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	-	16.9636	1.69e-06	0.0663	GATTACGTCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	60	73	-	16.3654	1.69e-06	0.0028	CTCCCTCCCCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	83	96	-	16.3654	1.69e-06	0.0028	GCTCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	83	96	-	16.3654	1.69e-06	0.0028	GCTCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	91	104	-	16.3654	1.69e-06	0.0028	GCTCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	11	24	+	16.3654	1.69e-06	0.0028	GCTCCGCCGCCGCC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	20	34	+	16.4231	1.69e-06	0.0437	CTAGGAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	20	34	+	16.4231	1.69e-06	0.0437	CTAGGAGCCAATCAG
NFYB	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	81	95	-	16.4231	1.69e-06	0.0437	CTAGGAGCCAATCAG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	71	85	-	16.3939	1.7e-06	0.0187	TTCTCACGAGATCTG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	74	88	-	16.3939	1.7e-06	0.0187	TTCTCACGAGATCTG
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	27	41	+	16.3939	1.7e-06	0.0187	TTCTCACGAGATCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	30	44	+	16.3939	1.7e-06	0.0187	TTCTCACGAGATCTG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	30	44	+	16.3939	1.7e-06	0.0187	TTCTCACGAGATCTG
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	30	43	-	16.2931	1.7e-06	0.028	GTTACTATGGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	30	43	-	16.2931	1.7e-06	0.028	GTTACTATGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	30	43	-	16.2931	1.7e-06	0.028	GTTACTATGGCAAC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	+	16.5902	1.7e-06	0.0372	CGCCCTGGGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	-	16.5902	1.7e-06	0.0372	AGCCCCCAGGGCG
Stat4	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	13	26	-	15.8793	1.7e-06	0.0732	GTTCCGGGAAAGCA
Stat4	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	67	80	+	15.8793	1.7e-06	0.0732	GTTCCGGGAAAGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	23	43	-	15.9388	1.7e-06	0.00212	AGAGGAAAAGGGGAGGGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	23	43	-	15.9388	1.7e-06	0.00212	AGAGGAAAAGGGGAGGGGGGT
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	67	+	14.1835	1.7e-06	0.0211	CCCCCACCCCACCCCCCTCT
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	60	76	+	15.0182	1.71e-06	0.00406	GCGGCCCCGCCCCCGCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	60	76	+	15.0182	1.71e-06	0.00406	GCGGCCCCGCCCCCGCG
ELF4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	60	-	16.5082	1.71e-06	0.0343	CTCCCGGAAGTG
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	51	61	+	16.069	1.71e-06	0.347	AAATCTCAGCC
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	51	61	+	16.069	1.71e-06	0.347	AAATCTCAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	44	58	+	16.2931	1.72e-06	0.00132	CGCCCGCCCCTCCCT
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	96	+	16.2131	1.72e-06	0.176	GCCCCCCCGCGACT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	15	32	+	1.60526	1.72e-06	0.011	GGAGGGAGGCAGGGAGGG
SPI1	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	65	78	+	14.6	1.72e-06	0.0486	GAAAAGCAGAAGTT
SPI1	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	70	83	+	14.6	1.72e-06	0.0486	GAAAAGCAGAAGTT
SPI1	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	32	45	-	14.6	1.72e-06	0.0486	GAAAAGCAGAAGTT
SPI1	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	37	50	-	14.6	1.72e-06	0.0486	GAAAAGCAGAAGTT
SCRT2	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	74	86	-	16.6721	1.72e-06	0.673	GAGCAACAGGTTA
RUNX1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	102	112	-	14.6207	1.72e-06	0.119	GTTTGTGGTTT
RUNX1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	3	13	+	14.6207	1.72e-06	0.119	GTTTGTGGTTT
EGR1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	9	22	-	16.3462	1.72e-06	0.0028	GCTCCGCCCCCTGC
EGR1	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	29	42	-	16.3462	1.72e-06	0.0028	GCACCACCCCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	30	43	-	16.3462	1.72e-06	0.0028	GCGCCGCCGCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	38	51	-	16.3462	1.72e-06	0.0028	CGCCCGCCGCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	50	63	-	16.3462	1.72e-06	0.0028	CGCCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	74	87	-	16.3462	1.72e-06	0.0028	GCGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	74	87	-	16.3462	1.72e-06	0.0028	GCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	52	65	+	16.3462	1.72e-06	0.0028	CGCCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	52	65	+	16.3462	1.72e-06	0.0028	CGCCCGCCGCCGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	64	77	+	16.3462	1.72e-06	0.0028	CGCCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	72	85	+	16.3462	1.72e-06	0.0028	GCGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	86	+	16.3462	1.72e-06	0.0028	GCACCACCCCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	106	+	16.3462	1.72e-06	0.0028	GCTCCGCCCCCTGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	90	101	-	15.3818	1.72e-06	0.054	CGCCCGGGGGCA
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	13	24	+	16.3846	1.72e-06	0.0208	GAAGATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	13	24	+	16.3846	1.72e-06	0.0208	GAAGATGGCTGC
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	13	24	+	16.3846	1.72e-06	0.0208	GAAGATGGCTGC
YY1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	65	76	-	16.3846	1.72e-06	0.0208	CAAGATGGCCAC
YY1	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	91	102	-	16.3846	1.72e-06	0.0208	GAAGATGGCTGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	35	55	-	15.9184	1.72e-06	0.00213	AAAGGAGGGGATGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	35	55	-	15.9184	1.72e-06	0.00213	AAAGGAGGGGATGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	59	79	-	15.9184	1.72e-06	0.00213	GGAGGAGATGGGGGCGGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	63	83	-	15.9184	1.72e-06	0.00213	AAAGGAGGGGATGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	63	83	-	15.9184	1.72e-06	0.00213	AAAGGAGGGGATGGGGTGGGG
Klf12	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	9	23	+	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	25	39	+	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	25	39	+	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	25	39	+	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	25	39	+	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
Klf12	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	92	106	-	16.4918	1.73e-06	0.0237	GACCACGCCCCCGCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	22	+	14.1468	1.73e-06	0.0211	CCCCCCCCCCCCCCCCCAGT
RFX5	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	-	15.2586	1.73e-06	0.0304	CGCTGTCATGGCAACG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	30	43	+	16.2576	1.73e-06	0.00779	CCGGGTGGGGCCTG
SPI1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	66	-	14.5818	1.73e-06	0.0486	AGAAACAGGAAGTT
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	50	60	+	16.3443	1.73e-06	0.0156	CCGGAAGCGCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	50	60	+	16.3443	1.73e-06	0.0156	CCGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	50	60	+	16.3443	1.73e-06	0.0156	CCGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	50	60	+	16.3443	1.73e-06	0.0156	CCGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	63	73	+	16.3443	1.73e-06	0.0156	CCGGAAGCGGG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	+	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	+	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	+	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	+	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	+	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	-	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	-	16.5306	1.73e-06	0.086	GGCCTGGGGGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	64	75	+	16.5455	1.74e-06	0.0421	GTCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	64	75	+	16.5455	1.74e-06	0.0421	GTCCCGGAAGTG
TGIF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	+	15.8899	1.74e-06	0.197	TGACAGCTGGCA
TGIF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	+	15.8899	1.74e-06	0.197	TGACAGCTGGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	70	83	-	16.0645	1.74e-06	0.11	CTTCCTGGAAATCC
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	70	83	-	16.0645	1.74e-06	0.11	CTTCCTGGAAATCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	55	68	-	15.617	1.74e-06	0.0778	GACCCCCCGCCGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	55	68	-	15.617	1.74e-06	0.0778	GACCCCCCGCCGTC
ELK4	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	31	41	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	62	72	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	62	72	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	78	88	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	78	88	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	78	88	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	92	102	+	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	23	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	23	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	53	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	73	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	73	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	73	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	73	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	73	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	76	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	76	-	16	1.74e-06	0.0164	GCACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	84	-	16	1.74e-06	0.0164	GCACTTCCGGG
Hnf4a	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	16	31	-	14.4364	1.74e-06	0.065	GAGATCAAAGTTCGAA
Hnf4a	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	16	31	-	14.4364	1.74e-06	0.065	GAGATCAAAGTTCGAA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	74	87	-	15.8592	1.74e-06	0.063	AGAATGAGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	74	87	-	15.8592	1.74e-06	0.063	AGAATGAGGAAGAA
Hes1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	-	11.8601	1.74e-06	0.0659	CGCACGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	+	11.8601	1.74e-06	0.0659	CGCACGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	32	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	32	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	32	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	32	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	32	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	34	+	16.2759	1.74e-06	0.00133	CCCCCTCCCCCTCCT
SP2	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	42	-	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	76	+	16.2759	1.74e-06	0.00133	CCCCCTCCCCCTCCT
SP2	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	87	+	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
SP2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	97	-	16.2759	1.74e-06	0.00133	GCCCCGCCCCGGGCT
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	57	68	+	16.4138	1.74e-06	0.164	GCGACCACGATG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	57	68	+	16.4138	1.74e-06	0.164	GCGACCACGATG
GLI2	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	47	58	-	16.4138	1.74e-06	0.164	GCGACCACGATG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	3	16	+	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	3	16	+	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	3	16	+	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	3	16	+	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
KLF14	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	47	60	+	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
KLF14	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	55	68	-	16.5345	1.75e-06	0.00979	GGCCCCGCCCCCAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	38	51	-	16.3269	1.75e-06	0.00282	CCGACTCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	45	58	-	16.3269	1.75e-06	0.00282	CGCCCGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	57	70	+	16.3269	1.75e-06	0.00282	CGCCCGCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	57	70	+	16.3269	1.75e-06	0.00282	CGCCCGCCCCCTGC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	27	37	-	16.2	1.75e-06	0.00309	GCGCTTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	27	37	-	16.2	1.75e-06	0.00309	GCGCTTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	83	93	-	16.2	1.75e-06	0.00309	GCGCTTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	83	93	-	16.2	1.75e-06	0.00309	GCGCTTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	83	93	-	16.2	1.75e-06	0.00309	GCGCTTGCGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	-	16.6379	1.76e-06	0.0343	CCCCCCCGGGGCA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	8	21	-	15.4694	1.76e-06	0.0465	GGGGGCTTGTGGGG
NFYB	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	7	21	+	16.3846	1.76e-06	0.0442	GTTTCAGCCAATCAG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	-	16.5574	1.77e-06	0.0372	CGCCCCGGGGGCT
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	6	17	-	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	6	17	-	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
HINFP	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	11	22	-	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	93	104	+	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	93	104	+	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
HINFP	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	98	109	+	16.2576	1.77e-06	0.0516	CGGCGTCCGCAG
EGR1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	12	25	-	16.3077	1.77e-06	0.00282	GCCCCGCCTCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	53	66	-	16.3077	1.77e-06	0.00282	TTTCCTCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	53	66	-	16.3077	1.77e-06	0.00282	TTTCCTCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	53	66	-	16.3077	1.77e-06	0.00282	TTTCCTCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	49	62	+	16.3077	1.77e-06	0.00282	TTTCCTCCCCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	103	+	16.3077	1.77e-06	0.00282	GCCCCGCCTCCTCA
SP2	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	63	77	-	16.2586	1.77e-06	0.00135	CTCCCGCCTCCTTGC
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	26	46	+	15.8776	1.77e-06	0.00217	GAGGGAGGCCGGGAGGAGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	29	49	+	15.8776	1.77e-06	0.00217	GGGGAACGAGGGAGGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	66	86	-	15.8776	1.77e-06	0.00217	GGGGAACGAGGGAGGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	66	86	-	15.8776	1.77e-06	0.00217	GGGGAACGAGGGAGGGGGAAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	66	86	-	15.8776	1.77e-06	0.00217	GGGGAACGAGGGAGGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	66	86	-	15.8776	1.77e-06	0.00217	GGGGAACGAGGGAGGGGGAAG
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	69	89	-	15.8776	1.77e-06	0.00217	GAGGGAGGCCGGGAGGAGGAG
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	44	57	-	16.197	1.77e-06	0.198	GTGCCACGTGAGCG
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	25	35	-	15.6327	1.78e-06	0.0625	GGATGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	25	35	-	15.6327	1.78e-06	0.0625	GGATGAGTCAG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	61	72	+	16.5091	1.78e-06	0.0421	TTCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	61	72	+	16.5091	1.78e-06	0.0421	TTCCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	61	72	+	16.5091	1.78e-06	0.0421	TTCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	61	72	+	16.5091	1.78e-06	0.0421	TTCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	61	72	+	16.5091	1.78e-06	0.0421	TTCCCGGAAGTG
KLF16	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	13	23	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	20	30	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	20	30	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	27	37	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	57	67	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	61	71	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	62	72	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	62	72	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	88	+	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	104	114	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	104	114	-	16.2586	1.78e-06	0.00373	GCCCCACCCCC
GLI2	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	7	18	+	16.3793	1.78e-06	0.164	GCGACCACGCTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	11	27	-	14.9091	1.78e-06	0.00412	CCCGCCACGCCCACACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	11	27	-	14.9091	1.78e-06	0.00412	CCCGCCACGCCCACACG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	11	27	-	14.9091	1.78e-06	0.00412	CCCGCCACGCCCACACG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	9	25	+	14.9091	1.78e-06	0.00412	CTCGCCACGCCCTCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	24	40	+	14.9091	1.78e-06	0.00412	CTCGCCACGCCCTCCTC
SP8	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	5	16	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	21	32	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	21	32	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	21	32	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	27	38	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	27	38	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	31	42	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	31	42	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	31	42	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	31	42	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	52	63	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	52	63	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	56	67	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	57	68	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	91	102	-	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	15	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	15	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	15	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	15	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	18	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	24	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	39	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	41	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	41	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	41	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	41	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	46	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	46	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	58	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	59	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	63	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	75	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	88	+	15.9211	1.79e-06	0.00873	GCCCCGCCCCCA
TBX19	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	43	62	+	16.0732	1.79e-06	0.412	GTTCGCACGCATGCGTGACA
TBX19	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	53	72	-	16.0732	1.79e-06	0.412	GTTCGCACGCATGCGTGACA
CTCF	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	15	33	+	15.9016	1.79e-06	0.0254	CGTCCAGCAGGCGGCGACG
CTCF	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	82	100	-	15.9016	1.79e-06	0.0254	CGTCCAGCAGGCGGCGACG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	50	65	+	16.0545	1.79e-06	0.0258	ACACGCCCGCGCACAC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	50	65	+	16.0545	1.79e-06	0.0258	ACACGCCCGCGCACAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	50	65	+	16.0545	1.79e-06	0.0258	ACACGCCCGCGCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	50	65	+	16.0545	1.79e-06	0.0258	ACACGCCCGCGCACAC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	12	25	-	16.2885	1.79e-06	0.00284	CCTCCGCCTCCGCT
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	25	38	-	16.2885	1.79e-06	0.00284	GCCCCGCCGACGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	24	37	+	16.2885	1.79e-06	0.00284	CCCTCTCCCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	24	37	+	16.2885	1.79e-06	0.00284	CCCTCTCCCCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	77	90	+	16.2885	1.79e-06	0.00284	GCCCCGCCGACGCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	85	97	-	15.5714	1.79e-06	0.0498	AGCAGCTGTTCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	60	76	+	14.8909	1.8e-06	0.00412	CCTGCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	60	76	+	14.8909	1.8e-06	0.00412	CCTGCCCCGCCCCCCTG
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	15	29	-	16.2414	1.8e-06	0.00137	GCCCCTCCCTCCTCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	22	42	-	15.8571	1.8e-06	0.00218	CGGTGAGGGAGGGAGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	46	66	+	15.8571	1.8e-06	0.00218	GAGGGAGGAGGCGGTGAAGGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	47	67	+	15.8571	1.8e-06	0.00218	GGAGGGAGAGGAAGAGGAAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	55	75	+	15.8571	1.8e-06	0.00218	GGAGGGAGAGGAAGAGGAAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	40	60	-	15.8571	1.8e-06	0.00218	GGAGGGAGAGGAAGAGGAAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	48	68	-	15.8571	1.8e-06	0.00218	GGAGGGAGAGGAAGAGGAAGA
ZNF263	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	49	69	-	15.8571	1.8e-06	0.00218	GAGGGAGGAGGCGGTGAAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	92	112	+	15.8571	1.8e-06	0.00218	GAAGCAGGCTGGAGAGGGGGC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	13	-	15.8621	1.8e-06	0.128	GGGCACGTGCCT
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	13	-	15.8621	1.8e-06	0.128	GGGCACGTGCCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	59	76	-	1.5	1.8e-06	0.0112	GGAGGAAGGGAAGGGATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	59	76	-	1.5	1.8e-06	0.0112	GGAGGAAGGGAAGGGATG
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	40	+	16.8571	1.8e-06	0.0524	GGTGACGTCACC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	40	-	16.8571	1.8e-06	0.0524	GGTGACGTCACC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	86	+	16.8571	1.8e-06	0.0524	GGTGACGTCACC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	86	-	16.8571	1.8e-06	0.0524	GGTGACGTCACC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	+	16.4918	1.8e-06	0.0537	AGCCCCCGGGGCG
CTCF	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	93	111	+	15.8852	1.8e-06	0.0254	TTGCCACAAGGAGACGCTG
CTCF	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	4	22	-	15.8852	1.8e-06	0.0254	TTGCCACAAGGAGACGCTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	13	29	-	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	13	29	-	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	13	29	-	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	13	29	-	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	66	82	-	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	33	49	+	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
SP4	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	86	102	+	14.8727	1.81e-06	0.00412	CTGACTACGCCCCCACA
ZIC1	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	86	99	+	15.5319	1.81e-06	0.0778	CACCGCCCGCTGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	16	29	-	15.5319	1.81e-06	0.0778	CACCGCCCGCTGCG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	37	47	-	16.2576	1.81e-06	0.676	GAGGTGTGAAA
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	37	47	-	16.2576	1.81e-06	0.676	GAGGTGTGAAA
NFYA	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	75	92	+	16.2927	1.81e-06	0.0225	GCCCCGCTGATTGGCTCC
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	23	40	-	16.2927	1.81e-06	0.0225	GCCCCGCTGATTGGCTCC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	23	40	-	16.2927	1.81e-06	0.0225	GCCCCGCTGATTGGCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	10	23	-	16.2692	1.81e-06	0.00286	TCCCCGCCCCCTTC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	+	16.6207	1.81e-06	0.0343	TGCCCCGGGGGGG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	+	16.6207	1.81e-06	0.0343	CGCCCCCAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	-	16.4754	1.81e-06	0.0537	CGCCCCCCGGGCA
Hmx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	4	20	+	15.8902	1.82e-06	0.812	AGGAGCAATTAAGCCAA
Hmx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	4	20	+	15.8902	1.82e-06	0.812	AGGAGCAATTAAGCCAA
EN2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	12.6271	1.82e-06	1	GCCAATTAGC
FOS	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	+	15.5957	1.82e-06	0.0862	TCTGACTCATC
FOS	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	+	15.5957	1.82e-06	0.0862	TCTGACTCATC
FOS	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	+	15.5957	1.82e-06	0.0862	TCTGACTCATC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	68	85	-	1.47368	1.82e-06	0.0112	GAAGGCGAGGCAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	68	85	-	1.47368	1.82e-06	0.0112	GAAGGCGAGGCAGGAAGG
SP4	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	28	44	-	14.8545	1.82e-06	0.00414	GGGGCCACGCCCCCGAT
ELF5	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	26	36	+	14.5273	1.82e-06	0.0729	AACCGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	70	80	+	14.5273	1.82e-06	0.0729	AACCGGAAGTA
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	70	80	+	14.5273	1.82e-06	0.0729	AACCGGAAGTA
YY2	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	24	34	-	15.4242	1.82e-06	0.223	GTCCGCCATTG
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	81	91	+	15.4242	1.82e-06	0.223	GTCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	81	91	+	15.4242	1.82e-06	0.223	GTCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	81	91	+	15.4242	1.82e-06	0.223	GTCCGCCATTG
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	81	91	+	15.4242	1.82e-06	0.223	GTCCGCCATTG
ELF5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	45	-	14.5273	1.82e-06	0.0729	AACCGGAAGTA
ELF5	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	89	-	14.5273	1.82e-06	0.0729	AACCGGAAGTA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	20	40	-	15.8367	1.82e-06	0.0022	GGAGGGAGGGGGGCAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	63	83	-	15.8367	1.82e-06	0.0022	AAAGGAAGCCGGGAGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	63	83	-	15.8367	1.82e-06	0.0022	AAAGGAAGCCGGGAGGGAGGG
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	35	49	-	15.6552	1.83e-06	0.0176	CCCCGCCCCCGCGGG
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	66	80	+	15.6552	1.83e-06	0.0176	CCCCGCCCCCGCGGG
IRF8	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	23	36	+	12.6364	1.83e-06	0.125	GGGAAACTGAAACT
IRF8	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	12	25	-	12.6364	1.83e-06	0.125	GGGAAACTGAAACT
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	25	38	+	17.2135	1.83e-06	0.464	AAAATGTAGGTCAC
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	25	38	+	17.2135	1.83e-06	0.464	AAAATGTAGGTCAC
RORA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	87	100	-	17.2135	1.83e-06	0.464	AAAATGTAGGTCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	30	+	16.2241	1.83e-06	0.00138	ACCCCGCCCCTGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	30	+	16.2241	1.83e-06	0.00138	ACCCCGCCCCTGCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	42	+	16.2241	1.83e-06	0.00138	TCCCCGCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	42	+	16.2241	1.83e-06	0.00138	TCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	42	+	16.2241	1.83e-06	0.00138	TCCCCGCCCCGCGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	26	40	-	16.2241	1.83e-06	0.00138	TCTCCGCCCCTTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	77	+	16.2241	1.83e-06	0.00138	GCCCCGCCCCACTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	77	+	16.2241	1.83e-06	0.00138	GCCCCGCCCCACTGG
SP2	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	73	87	-	16.2241	1.83e-06	0.00138	TCCCCGCCCCGCGCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	80	97	-	1.46053	1.83e-06	0.0112	GGGGGGAAAGAAGGCAAG
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	20	33	+	15.697	1.83e-06	0.15	GGGGTCATAGTTCA
Klf4	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	6	15	-	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	55	-	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	15	24	+	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	15	24	+	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	15	24	+	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	18	27	+	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	64	73	+	16.3163	1.83e-06	0.00384	TGGGCGTGGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	39	53	+	15.9868	1.83e-06	0.0701	TGGGTGACTCAGCGT
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	39	53	+	15.9868	1.83e-06	0.0701	TGGGTGACTCAGCGT
IRF9	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	11	25	-	11.1091	1.83e-06	0.14	AGTGAAAGCGAAAGT
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	23	37	-	11.1091	1.83e-06	0.14	AGTGAAAGCGAAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	23	37	-	11.1091	1.83e-06	0.14	AGTGAAAGCGAAAGT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	43	56	-	15.3673	1.84e-06	0.0465	GGGGGCTAAAGGGA
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	-	16.1818	1.84e-06	0.0519	CGCCTGAGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	+	16.1818	1.84e-06	0.0519	CGCCTGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	-	16.1818	1.84e-06	0.0519	CGCCTGAGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	+	16.1818	1.84e-06	0.0519	CGCCTGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	-	16.1818	1.84e-06	0.0519	CGCCCCAGGCA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	28	39	-	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	28	39	-	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	29	+	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	46	+	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	46	+	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	46	+	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	46	+	15.8553	1.84e-06	0.00873	GCCCCGCCCACA
EGR1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	48	61	-	16.25	1.84e-06	0.00286	GCCCCGCCCCCGTT
EGR1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	61	74	-	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	69	82	-	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	46	+	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	46	+	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	46	+	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	54	+	16.25	1.84e-06	0.00286	GCCCCGCCCCTGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	67	+	16.25	1.84e-06	0.00286	GCCCCGCCCCCGTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	71	+	16.25	1.84e-06	0.00286	GCCCCGCCCCCGTT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	71	+	16.25	1.84e-06	0.00286	GCCCCGCCCCCGTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	25	38	+	16.4483	1.84e-06	0.0103	TGCCCCGCCCACCC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	84	97	+	16.1818	1.84e-06	0.0078	CTCGGCCAGGCCTG
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	45	58	+	15.7746	1.85e-06	0.063	CAAATGAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	45	58	+	15.7746	1.85e-06	0.063	CAAATGAGGAAGTT
SPIC	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	52	65	+	15.7746	1.85e-06	0.063	AAAAACCGGAAGCA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	63	-	15.7746	1.85e-06	0.063	AAAAACCGGAAGCA
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	63	-	15.7746	1.85e-06	0.063	AAAAACCGGAAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	63	-	15.7746	1.85e-06	0.063	AAAAACCGGAAGCA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	63	-	15.7746	1.85e-06	0.063	AAAAACCGGAAGCA
SPIC	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	57	70	-	15.7746	1.85e-06	0.063	CAAATGAGGAAGTT
SPI1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	52	65	+	14.4182	1.85e-06	0.0486	AAAAACCGGAAGCA
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	63	-	14.4182	1.85e-06	0.0486	AAAAACCGGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	63	-	14.4182	1.85e-06	0.0486	AAAAACCGGAAGCA
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	63	-	14.4182	1.85e-06	0.0486	AAAAACCGGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	63	-	14.4182	1.85e-06	0.0486	AAAAACCGGAAGCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	68	88	-	15.8163	1.85e-06	0.00222	AAAGAAGAGAAGGGAGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	72	92	-	15.8163	1.85e-06	0.00222	GAAGGAAGTAAGGAAAGAGGA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	38	+	16.8367	1.85e-06	0.0524	GATGACGTCAGC
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	36	-	16.8367	1.85e-06	0.0524	GATGACGTCAGC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	40	-	16.8367	1.85e-06	0.0524	GATGACGTCAGC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	88	-	16.8367	1.85e-06	0.0524	GATGACGTCAGC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	-	16.4918	1.85e-06	0.0372	CGCCCTGGGGGCG
NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	+	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	+	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	-	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	-	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	-	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	-	17.2041	1.85e-06	0.11	CATGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	-	17.2041	1.85e-06	0.11	CATGAGTCATC
NFYA	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	74	91	+	16.2561	1.86e-06	0.0225	AGGCCGCCCATTGGCCGG
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	24	41	-	16.2561	1.86e-06	0.0225	AGGCCGCCCATTGGCCGG
NFYA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	24	41	-	16.2561	1.86e-06	0.0225	AGGCCGCCCATTGGCCGG
Myog	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	82	92	-	15.3878	1.86e-06	0.0481	AACAGCTGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	24	42	+	15.8361	1.86e-06	0.0254	CGTCCAGAAGGAGGCGGGA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	24	42	+	15.8361	1.86e-06	0.0254	CGTCCAGAAGGAGGCGGGA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	24	42	+	15.8361	1.86e-06	0.0254	CGTCCAGAAGGAGGCGGGA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	55	68	+	16.431	1.86e-06	0.0103	TGCCCCGCCCCCTG
IRF7	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	86	99	-	16.2581	1.86e-06	0.341	TCCAAAGTGAAAGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	8	22	-	16.2069	1.86e-06	0.0014	GGTCCGCCCCTCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	8	22	-	16.2069	1.86e-06	0.0014	GGTCCGCCCCTCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	8	22	-	16.2069	1.86e-06	0.0014	GGTCCGCCCCTCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	8	22	-	16.2069	1.86e-06	0.0014	GGTCCGCCCCTCGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	13	27	-	16.2069	1.86e-06	0.0014	GCTCCGCCTTCTCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	66	80	+	16.2069	1.86e-06	0.0014	GCTCCGCCTTCTCCC
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	45	55	+	16.4468	1.86e-06	0.0801	TGTGACTCATG
JUND	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	45	55	+	16.4468	1.86e-06	0.0801	TGTGACTCATG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	33	-	13.9231	1.86e-06	0.153	CGCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	33	-	13.9231	1.86e-06	0.153	CGCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	33	-	13.9231	1.86e-06	0.153	CGCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	33	-	13.9231	1.86e-06	0.153	CGCACCTGCG
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	33	-	13.9231	1.86e-06	0.153	CGCACCTGCG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	14	23	+	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	24	33	+	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	17	26	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	17	26	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	18	27	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	22	31	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	24	33	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	29	38	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	30	39	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	37	46	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	47	56	+	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	52	61	+	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	54	63	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	59	68	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	59	68	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	59	68	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	69	78	+	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	66	75	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	92	101	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	101	110	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	101	110	-	13.697	1.86e-06	0.0401	GGAGGGGGAG
TCF3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	19	+	13.9231	1.86e-06	0.153	CGCACCTGCG
TCF3	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	91	+	13.9231	1.86e-06	0.153	CGCACCTGCG
EGR4	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	7	22	+	16	1.86e-06	0.0258	CCACGCCCACCCCAAC
NRF1	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	29	39	-	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	41	51	-	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	41	51	-	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	64	74	+	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	64	74	+	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	76	86	+	16.1818	1.87e-06	0.00309	ACGCCTGCGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	68	78	-	16.0517	1.87e-06	0.0184	GGGCGGGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	68	78	-	16.0517	1.87e-06	0.0184	GGGCGGGAGGC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	87	102	+	11.2653	1.87e-06	0.877	GAGGTCAGAAGTCCAC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	56	67	+	16.3607	1.87e-06	0.0343	ATCCCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	56	67	+	16.3607	1.87e-06	0.0343	ATCCCGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	56	67	+	16.3607	1.87e-06	0.0343	ATCCCGGAAGTT
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	56	67	+	16.3607	1.87e-06	0.0343	ATCCCGGAAGTT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	2	15	-	16.2308	1.87e-06	0.00288	GGCCCGCCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	2	15	-	16.2308	1.87e-06	0.00288	GGCCCGCCCCCTCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	54	67	-	16.2308	1.87e-06	0.00288	GCCCCACCCCCTGC
EGR1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	93	106	-	16.2308	1.87e-06	0.00288	GGCCCGCCCCCTCT
EGR1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	22	+	16.2308	1.87e-06	0.00288	GGCCCGCCCCCTCT
EGR1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	113	+	16.2308	1.87e-06	0.00288	GGCCCGCCCCCTCT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	66	86	-	15.7959	1.87e-06	0.00224	GGAGGAGGAGGAGGGCGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	66	86	-	15.7959	1.87e-06	0.00224	GGAGGAGGAGGAGGGCGAGGA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	100	112	-	15.5306	1.87e-06	0.0498	TCCAGCTGCCGCC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	100	112	-	15.5306	1.87e-06	0.0498	TCCAGCTGCCGCC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	100	112	-	15.5306	1.87e-06	0.0498	TCCAGCTGCCGCC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	100	112	-	15.5306	1.87e-06	0.0498	TCCAGCTGCCGCC
ZIC4	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	20	34	-	16.0727	1.88e-06	0.0875	CGCCCCCCGCCGCGG
ZIC4	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	95	+	16.0727	1.88e-06	0.0875	CGCCCCCCGCCGCGG
ELK4	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	18	28	+	15.8909	1.88e-06	0.0173	GCGCTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	79	-	15.8909	1.88e-06	0.0173	GCGCTTCCGGT
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	70	83	-	15.9516	1.88e-06	0.11	ATTCCTGGAAATCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	70	83	-	15.9516	1.88e-06	0.11	ATTCCTGGAAATCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	70	83	-	15.9516	1.88e-06	0.11	ATTCCTGGAAATCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	70	83	-	15.9516	1.88e-06	0.11	ATTCCTGGAAATCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	70	83	-	15.9516	1.88e-06	0.11	ATTCCTGGAAATCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	28	42	-	16.1897	1.88e-06	0.00141	GTCCCGCCCTCGGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	28	42	-	16.1897	1.88e-06	0.00141	GTCCCGCCCTCGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	67	81	-	16.1897	1.88e-06	0.00141	ACTCCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	67	81	-	16.1897	1.88e-06	0.00141	ACTCCGCCCCCGCCC
REST	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	83	103	-	13.8673	1.88e-06	0.0892	GCCAGAACCACAGCGAGCGCT
Zfx	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	43	56	-	16.1515	1.89e-06	0.0078	GTGGGCTGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	59	72	+	16.1515	1.89e-06	0.0078	GTGGGCTGGGCCTG
ATF7	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	35	48	+	16.8714	1.89e-06	0.0669	GCATGACGTCACAC
ATF7	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	40	53	+	16.8714	1.89e-06	0.0669	GCATGACGTCACAC
ATF7	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	62	75	-	16.8714	1.89e-06	0.0669	GCATGACGTCACAC
ATF7	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	67	80	-	16.8714	1.89e-06	0.0669	GCATGACGTCACAC
SP4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	81	97	-	14.7636	1.89e-06	0.00423	CTGGCTCCGCCCCCGCC
SP4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	18	34	+	14.7636	1.89e-06	0.00423	CTGGCTCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	49	65	+	14.7636	1.89e-06	0.00423	CTGGCTCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	49	65	+	14.7636	1.89e-06	0.00423	CTGGCTCCGCCCCCGCC
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	67	80	+	15.6212	1.89e-06	0.15	GGGGTGAAGGGTCA
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	5	19	+	16.4242	1.89e-06	0.0689	GTAGTTTCTATTTCC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	95	109	-	16.4242	1.89e-06	0.0689	GTAGTTTCTATTTCC
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	74	87	-	12.5273	1.89e-06	0.125	AAGAAACTGAAAGT
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	74	87	-	12.5273	1.89e-06	0.125	AAGAAACTGAAAGT
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	19	30	+	16.25	1.89e-06	0.0222	CAAGATGGCTGT
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	19	30	+	16.25	1.89e-06	0.0222	CAAGATGGCTGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	13	27	+	16.2951	1.89e-06	0.0237	GGCCCCGCCCACCTT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	13	27	+	16.2951	1.89e-06	0.0237	GGCCCCGCCCACCTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	15	35	+	15.7755	1.9e-06	0.00224	AGGGGAGAGGGAGGAGAAGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	24	44	+	15.7755	1.9e-06	0.00224	GGAGCGGGAGGAGGCGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	24	44	+	15.7755	1.9e-06	0.00224	GGAGCGGGAGGAGGCGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	24	44	+	15.7755	1.9e-06	0.00224	GGAGCGGGAGGAGGCGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	24	44	+	15.7755	1.9e-06	0.00224	GGAGCGGGAGGAGGCGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	29	49	-	15.7755	1.9e-06	0.00224	GGAGGACGGTGTGAGGGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	29	49	-	15.7755	1.9e-06	0.00224	GGAGGACGGTGTGAGGGTGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	41	61	-	15.7755	1.9e-06	0.00224	CAGGGAGGGGAAAGGGGGAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	66	86	+	15.7755	1.9e-06	0.00224	GGAGGACGGTGTGAGGGTGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	72	92	-	15.7755	1.9e-06	0.00224	GGGGGAGGGGCCTGTGGGGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	18	35	-	1.36842	1.9e-06	0.0115	GGGAGAAAGGGAGAAAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	18	35	-	1.36842	1.9e-06	0.0115	GGGAGAAAGGGAGAAAAG
TBX19	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	53	72	+	15.9756	1.9e-06	0.412	TGTCACGCATGCGTGCGAAC
TBX19	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	43	62	-	15.9756	1.9e-06	0.412	TGTCACGCATGCGTGCGAAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	60	76	-	14.7455	1.9e-06	0.00423	GGAGCCACGCCCACGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	74	88	-	16.1724	1.9e-06	0.00142	GCCCCGCCTCTCTTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	74	88	-	16.1724	1.9e-06	0.00142	GCCCCGCCTCTCTTG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	30	44	-	16.1571	1.9e-06	0.0701	CCGGGGCGGAGGGCA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	34	48	+	16.1571	1.9e-06	0.0701	CCGGGGCGGAGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	34	48	+	16.1571	1.9e-06	0.0701	CCGGGGCGGAGGGCA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	32	43	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	32	43	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	32	43	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	32	43	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	72	83	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	78	89	+	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	37	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	43	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	83	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	90	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	90	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	90	-	16.3279	1.9e-06	0.0343	GCCCCGGAAGTG
RFX5	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	+	15.0517	1.9e-06	0.0328	GGTTGCCGTGGCGACT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	16	29	-	16.2115	1.91e-06	0.00291	CCCCTGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	16	29	-	16.2115	1.91e-06	0.00291	CCCCTGCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	94	107	+	16.2115	1.91e-06	0.00291	CCCCTGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	94	107	+	16.2115	1.91e-06	0.00291	CCCCTGCCCCCGCG
SP1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	15	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	20	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	9	19	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	9	19	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	9	19	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	9	19	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	30	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	16	26	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	18	28	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	18	28	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	32	42	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	36	46	-	16.1154	1.91e-06	0.00185	GTCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	61	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	42	52	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	42	52	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	53	63	+	16.1154	1.91e-06	0.00185	GTCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	52	62	-	16.1154	1.91e-06	0.00185	GTCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	59	69	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	69	79	+	16.1154	1.91e-06	0.00185	GTCCCTCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	83	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	99	+	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	85	95	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	95	105	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	100	110	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	100	110	-	16.1154	1.91e-06	0.00185	GCCCCTCCTCC
Zfx	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	29	42	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	37	50	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	37	50	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	37	50	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	37	50	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	28	41	-	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	38	51	-	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	64	77	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	65	78	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	74	87	+	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	65	78	-	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	73	86	-	16.1364	1.91e-06	0.0078	AGGGGCGGGGCCTG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	14	31	-	16.2073	1.91e-06	0.0228	GTCCTGCTCATTGGTGGA
Stat6	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	89	103	-	16	1.92e-06	0.235	CTCTTCCTCAGAATC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	14	30	-	14.7273	1.92e-06	0.00423	GCAGCCCCGCCCCCGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	14	30	-	14.7273	1.92e-06	0.00423	GCAGCCCCGCCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	14	30	-	14.7273	1.92e-06	0.00423	GCAGCCCCGCCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	14	30	-	14.7273	1.92e-06	0.00423	GCAGCCCCGCCCCCGGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	19	33	+	15.569	1.92e-06	0.0182	CCCCGCCCACGCCGA
REST	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	89	109	-	13.8265	1.92e-06	0.0892	GTGACGACCCAGGACAGCCCC
REST	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	6	26	+	13.8265	1.92e-06	0.0892	GTGACGACCCAGGACAGCCCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	61	74	-	16.3793	1.92e-06	0.0103	AGCCACGCCCACGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	13	33	+	15.7551	1.93e-06	0.00225	TGAGCAGCGAGGGGAGGGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	5	25	-	15.7551	1.93e-06	0.00225	GGAGGAGGCAAGTGGAAAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	35	55	+	15.7551	1.93e-06	0.00225	AAAGAAGGAAGGAAGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	35	55	+	15.7551	1.93e-06	0.00225	AAAGAAGGAAGGAAGGAAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	42	62	+	15.7551	1.93e-06	0.00225	GGAGGAGGGGGGAAGGGTTCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	70	90	-	15.7551	1.93e-06	0.00225	GGAGAACAGGGAAGAGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	70	90	-	15.7551	1.93e-06	0.00225	GGAGAACAGGGAAGAGGGAGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	82	102	-	15.7551	1.93e-06	0.00225	TGAGCAGCGAGGGGAGGGAGC
RFX4	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	-	16.1061	1.93e-06	0.0366	CGCTGTCATGGCAACG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	38	48	-	15.9231	1.93e-06	0.0521	CGCCTGAGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	67	77	+	15.9231	1.93e-06	0.0521	CGCCTGAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	74	84	-	15.9231	1.93e-06	0.0521	CGCCTGAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	103	113	+	15.9231	1.93e-06	0.0521	CGCCTGAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	+	16.459	1.93e-06	0.0372	CGCCCCGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	+	16.459	1.93e-06	0.0372	CGCCCCGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	-	16.459	1.93e-06	0.0372	CGCCCCGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	-	16.459	1.93e-06	0.0372	CGCCCCGGGGGCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	65	81	+	14.7091	1.93e-06	0.00425	GCTGCCCCGCCCCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	9	23	-	16.1552	1.93e-06	0.00143	CCCCCACCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	9	23	-	16.1552	1.93e-06	0.00143	CCCCCACCCCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	9	23	-	16.1552	1.93e-06	0.00143	CCCCCACCCCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	34	48	+	16.1552	1.93e-06	0.00143	ACCCCGCCTCCCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	34	48	+	16.1552	1.93e-06	0.00143	ACCCCGCCTCCCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	28	42	-	16.1552	1.93e-06	0.00143	GCTCCGCCTCCGCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	28	42	-	16.1552	1.93e-06	0.00143	GCTCCGCCTCCGCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	28	42	-	16.1552	1.93e-06	0.00143	GCTCCGCCTCCGCGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	37	51	-	16.1552	1.93e-06	0.00143	GCCCCGCCCACCAGG
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	26	46	+	15.8571	1.93e-06	0.381	GAGTTGCTGACAAAGCATTTA
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	7	27	-	15.8571	1.93e-06	0.381	GAGTTGCTGACAAAGCATTTA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	31	44	-	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	31	44	-	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	31	44	-	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	31	44	-	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	84	97	-	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	31	+	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EGR1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	84	+	16.1923	1.93e-06	0.00291	GGCCCGCCCCCACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	38	55	-	1.32895	1.94e-06	0.0115	GAAGGGGAGGAGGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	38	55	-	1.32895	1.94e-06	0.0115	GAAGGGGAGGAGGGCAGG
Klf12	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	39	53	-	16.2459	1.94e-06	0.0237	GGCCACACCCCTCCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	23	33	+	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	23	33	+	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	23	33	+	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	23	33	+	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	54	64	-	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	54	64	-	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	54	64	-	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	54	64	-	16.1639	1.94e-06	0.0159	CCGGAAGTGAA
RFX2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	36	51	-	15.1429	1.94e-06	0.0351	CGCTGTCATGGCAACG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	5	18	-	16.1212	1.94e-06	0.00787	CCGACCGGGGCCTC
RFX4	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	-	16.0909	1.94e-06	0.0366	AGTCGCCACGGCAACC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	2	22	-	15.7347	1.95e-06	0.00228	AGAGGAGGGGGGGGATTGGCG
SP2	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	84	+	16.1379	1.96e-06	0.00145	CCCCCTCCCCCTGCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	62	78	-	14.6727	1.96e-06	0.0043	CGCACCACGCCCCCTTC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	69	80	+	16.3115	1.96e-06	0.0343	GAACCGGAAGTA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	69	80	+	16.3115	1.96e-06	0.0343	GAACCGGAAGTA
ELF4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	46	-	16.3115	1.96e-06	0.0343	GAACCGGAAGTA
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	81	93	+	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	81	93	+	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	81	93	+	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	81	93	+	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	31	43	-	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	31	43	-	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	31	43	-	16.6393	1.96e-06	0.136	TGCTGATGCAATC
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	31	43	-	16.6393	1.96e-06	0.136	TGCTGATGCAATC
USF2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	41	51	-	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	78	88	-	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	28	+	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	37	+	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	60	+	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	72	+	15.898	1.96e-06	0.0367	GCCACGTGACT
USF2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	74	+	15.898	1.96e-06	0.0367	GCCACGTGACT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	43	+	16.1731	1.96e-06	0.00295	CCCCCGCCCTCGCA
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	49	69	+	16.1129	1.96e-06	0.0724	GGGCCGTTTCTCTTTCTTTTC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	49	69	+	16.1129	1.96e-06	0.0724	GGGCCGTTTCTCTTTCTTTTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	49	69	+	16.1129	1.96e-06	0.0724	GGGCCGTTTCTCTTTCTTTTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	49	69	+	16.1129	1.96e-06	0.0724	GGGCCGTTTCTCTTTCTTTTC
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	63	73	+	16.0345	1.96e-06	0.347	CAATCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	69	79	-	16.0345	1.96e-06	0.347	CAATCACAGCA
BATF::JUN	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	3	13	-	15.7692	1.96e-06	0.155	GAGATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	16	26	-	15.7692	1.96e-06	0.155	GAGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	16	26	-	15.7692	1.96e-06	0.155	GAGATGACTCA
Mafb	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	41	52	-	15.0112	1.96e-06	0.369	TAAATGCTGACT
Mafb	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	63	74	+	15.0112	1.96e-06	0.369	TAAATGCTGACT
EGR4	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	19	34	+	15.9273	1.97e-06	0.0258	CCCCGCCCACGCCGAC
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	27	40	+	15.1939	1.97e-06	0.0465	GGGGCGGTGGGGGG
ETV6	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	15.6346	1.97e-06	0.0363	GGCGGAAGTG
REL	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	9	18	+	14.4545	1.97e-06	0.0944	CGGGCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	12	21	+	14.4545	1.97e-06	0.0944	CGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	12	21	+	14.4545	1.97e-06	0.0944	CGGGCTTTCC
REL	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	35	44	-	14.4545	1.97e-06	0.0944	CGGGCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	71	80	+	14.4545	1.97e-06	0.0944	CGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	71	80	+	14.4545	1.97e-06	0.0944	CGGGCTTTCC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	15.6346	1.97e-06	0.0363	GGCGGAAGTG
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	74	89	+	14.1273	1.97e-06	0.0677	CGGGTCAGAGTTCACG
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	74	89	+	14.1273	1.97e-06	0.0677	CGGGTCAGAGTTCACG
SP4	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	27	43	-	14.6545	1.97e-06	0.00432	CCTGCCCCGCCCCTTCC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	25	38	+	15.9038	1.97e-06	0.118	TGAGGATGAGTCAT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	+	15.3273	1.98e-06	0.054	CGCCCCCGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	+	15.3273	1.98e-06	0.054	CGCCCCCGGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	+	15.3273	1.98e-06	0.054	CCCCCCCAGGCA
E2F6	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	81	91	-	16.0172	1.98e-06	0.022	AGGCGGGAGGG
E2F6	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	24	34	+	16.0172	1.98e-06	0.022	AGGCGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	47	57	+	16.0172	1.98e-06	0.022	AGGCGGGAGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	69	79	+	16.0172	1.98e-06	0.022	AGGCGGGAGGG
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	13	24	+	16.1667	1.98e-06	0.0516	GAGCGTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	13	24	+	16.1667	1.98e-06	0.0516	GAGCGTCCGCGC
HINFP	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	91	102	-	16.1667	1.98e-06	0.0516	GAGCGTCCGCGC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	24	38	-	16.1967	1.98e-06	0.0237	AACCACGCCCAGCTC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	24	38	-	16.1967	1.98e-06	0.0237	AACCACGCCCAGCTC
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	33	53	+	15.7143	1.98e-06	0.0023	GGTGGGGGGGAAGGGGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	62	82	-	15.7143	1.98e-06	0.0023	GGTGGGGGGGAAGGGGGAGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	14	27	+	15.1837	1.98e-06	0.0465	GGGGCCCACGGGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	14	27	+	15.1837	1.98e-06	0.0465	GGGGCCCACGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	62	75	+	15.1837	1.98e-06	0.0465	GGGGCCCACGGGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	62	75	+	15.1837	1.98e-06	0.0465	GGGGCCCACGGGCG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	79	89	+	15.6122	1.98e-06	0.0672	CGGTGACTCAT
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	2	18	-	12.8421	1.98e-06	0.248	CCGGTGACGTAAGATTG
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	2	18	-	12.8421	1.98e-06	0.248	CCGGTGACGTAAGATTG
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	2	18	-	12.8421	1.98e-06	0.248	CCGGTGACGTAAGATTG
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	2	18	-	12.8421	1.98e-06	0.248	CCGGTGACGTAAGATTG
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	2	18	-	12.8421	1.98e-06	0.248	CCGGTGACGTAAGATTG
SP3	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	22	+	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	32	42	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	93	103	-	15.3171	1.99e-06	0.00487	CCCACACCCAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	28	41	+	16.1538	1.99e-06	0.00297	CCGCCGCTCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	28	41	+	16.1538	1.99e-06	0.00297	CCGCCGCTCCCGCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	11	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	11	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	11	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	13	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	14	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	14	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	21	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	21	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	4	13	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	26	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	26	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	27	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	27	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	27	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	27	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	27	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	30	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	34	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	34	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	39	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	42	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	42	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	42	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	42	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	42	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	25	34	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	25	34	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	43	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	43	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	44	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	44	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	29	38	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	29	38	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	29	38	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	39	48	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	59	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	59	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	59	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	59	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	59	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	43	52	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	64	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	64	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	65	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	65	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	65	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	48	57	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	50	59	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	51	60	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	53	62	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	53	62	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	53	62	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	53	62	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	55	64	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	56	65	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	56	65	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	56	65	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	56	65	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	76	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	72	81	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	73	82	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	91	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	74	83	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	74	83	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	74	83	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	89	98	-	16.102	1.99e-06	0.00249	GCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	111	+	16.102	1.99e-06	0.00249	GCCCCTCCCC
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	8	21	+	15.1633	1.99e-06	0.0465	GGGGGGAAAAGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	94	107	-	15.1633	1.99e-06	0.0465	GGGGGGAAAAGGGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	62	73	-	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	62	73	-	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	64	75	-	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	64	75	-	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	17	+	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	81	+	15.7895	2e-06	0.00909	CCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	81	+	15.7895	2e-06	0.00909	CCCCCGCCCCCT
FOXB1	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	49	59	-	15.4231	2e-06	1	TATGTCAATAT
MEF2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	+	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	-	16.4355	2e-06	0.118	GCTATAAATAGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	16	36	+	15.6939	2.01e-06	0.00233	GAAGGAACGGAGCGGGGAGGA
MAFK	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	38	52	+	15.9111	2.01e-06	0.567	ACAAGTCAGCATTTA
MAFK	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	63	77	-	15.9111	2.01e-06	0.567	ACAAGTCAGCATTTA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	8	21	+	16.129	2.01e-06	0.341	CCAAAAGTGAAAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	16	30	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	16	30	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	16	30	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCTTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	16	30	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCTTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	16	30	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCTTC
Klf12	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	42	56	-	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCCTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	59	73	+	16.1639	2.01e-06	0.0237	GGCCCCGCCCTCCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	65	+	16.1034	2.01e-06	0.00148	GCCCCTCCTCCTCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	88	102	-	16.1034	2.01e-06	0.00148	GGTCCGCCCCTTCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	88	102	-	16.1034	2.01e-06	0.00148	GGTCCGCCCCTTCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	88	102	-	16.1034	2.01e-06	0.00148	GGTCCGCCCCTTCCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	64	77	-	16.1346	2.01e-06	0.00298	CCTCCTCCCACGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	64	77	-	16.1346	2.01e-06	0.00298	CCTCCTCCCACGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	64	77	-	16.1346	2.01e-06	0.00298	CCTCCTCCCACGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	64	77	-	16.1346	2.01e-06	0.00298	CCTCCTCCCACGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	64	77	-	16.1346	2.01e-06	0.00298	CCTCCTCCCACGCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	12	25	+	16.1346	2.01e-06	0.00298	TGTCCGCCCCCTCC
RAX	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	12.661	2.02e-06	1	GCCAATTAGC
Sox6	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	71	80	+	15.1571	2.02e-06	0.427	CCATTGTCTT
GBX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	12.9149	2.02e-06	1	GCCAATTAGC
GBX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	13.806	2.02e-06	1	GCCAATTAGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	15.7576	2.02e-06	0.131	GTCACGTGAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	15.7576	2.02e-06	0.131	GTCACGTGAT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	17.1286	2.02e-06	0.151	GTCACGTGAT
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	17.1286	2.02e-06	0.151	GTCACGTGAT
Sox6	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	35	44	-	15.1571	2.02e-06	0.427	CCATTGTCTT
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	38	47	-	16.3091	2.02e-06	0.965	GAGGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	38	47	-	16.3091	2.02e-06	0.965	GAGGTGTGAA
MSC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	-	16.3659	2.02e-06	0.569	GACAGCTGTT
SP4	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	19	35	-	14.6	2.02e-06	0.0044	GCCGCCCCGCCCCCACC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	64	81	+	1.23684	2.02e-06	0.0118	GGGAGGAAGAAAGGCTAG
Pou5f1::Sox2	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	49	+	15.8387	2.02e-06	0.559	CATTGTCATGGAAAC
Pou5f1::Sox2	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	66	80	-	15.8387	2.02e-06	0.559	CATTGTCATGGAAAC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	85	97	+	15.4898	2.02e-06	0.0498	TGCAGCTGCTCCG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	85	97	+	15.4898	2.02e-06	0.0498	TGCAGCTGCTCCG
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	85	97	+	15.4898	2.02e-06	0.0498	TGCAGCTGCTCCG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	85	97	+	15.4898	2.02e-06	0.0498	TGCAGCTGCTCCG
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	55	75	+	13.7143	2.02e-06	0.0892	GTCAGCACCAAGGGCACCCGC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	55	75	+	13.7143	2.02e-06	0.0892	GTCAGCACCAAGGGCACCCGC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	55	75	+	13.7143	2.02e-06	0.0892	GTCAGCACCAAGGGCACCCGC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	1	21	-	16.0645	2.02e-06	0.0724	CTTTAGTTTCATTTCTCTTTT
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	1	11	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	17	27	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	35	45	+	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	39	49	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	67	+	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	48	58	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	64	74	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	64	74	-	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	92	+	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	98	+	16.0385	2.03e-06	0.00191	GCTCCTCCCCC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	29	39	+	15.8909	2.03e-06	0.0613	TGGTGACTCAG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	84	97	-	16.0758	2.03e-06	0.00816	GCGCCCTGGGCCTG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	22	38	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	22	38	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	22	38	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	22	38	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	22	38	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	54	70	+	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	45	61	-	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	45	61	-	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	45	61	-	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
NR1H2::RXRA	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	77	93	-	7.75281	2.03e-06	0.137	AAAGGTCGAAGTTCATC
HSF4	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	83	95	-	15.939	2.03e-06	0.612	TTCCAGAAACTTC
ZIC4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	66	+	15.9636	2.03e-06	0.0875	CGCCCCCCGGGGTGC
ZIC4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	49	63	-	15.9636	2.03e-06	0.0875	CGCCCCCCGGGGTGC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	45	+	15.8387	2.03e-06	0.11	CTTCCTGGAAACCT
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	71	+	15.8387	2.03e-06	0.11	CTTCCTGGAAACCT
ZNF263	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	1	21	+	15.6735	2.03e-06	0.00235	AGGGGTGGAGGCGGAGAAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	11	31	-	15.6735	2.03e-06	0.00235	GAGGGAGGGATGCGAGGGGGT
ZNF263	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	94	114	-	15.6735	2.03e-06	0.00235	AGGGGTGGAGGCGGAGAAGGG
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	96	110	+	15.9483	2.04e-06	0.235	GCCTTCCTGAGAAGA
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	96	110	+	15.9483	2.04e-06	0.235	GCCTTCCTGAGAAGA
Stat6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	96	110	+	15.9483	2.04e-06	0.235	GCCTTCCTGAGAAGA
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	96	110	+	15.9483	2.04e-06	0.235	GCCTTCCTGAGAAGA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	+	14.3279	2.04e-06	0.353	TGACAGCTGGCA
PKNOX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	+	14.3279	2.04e-06	0.353	TGACAGCTGGCA
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	23	42	-	13.7431	2.04e-06	0.0229	CTCCCCCACACCCGCCCACA
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	57	76	+	13.7431	2.04e-06	0.0229	CTCCCCCACACCCGCCCACA
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	39	58	-	13.7431	2.04e-06	0.0229	CTCCCCCACACCCGCCCACA
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	73	92	+	13.7431	2.04e-06	0.0229	CTCCCCCACACCCGCCCACA
SP2	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	20	+	16.0862	2.04e-06	0.0015	TCCCCACCCCCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	30	+	16.0862	2.04e-06	0.0015	GCCCCGCCCTGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	30	+	16.0862	2.04e-06	0.0015	GCCCCGCCCTGCCGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	44	58	+	16.0862	2.04e-06	0.0015	GCTCCGCCTCCCGGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	29	45	-	14.5636	2.05e-06	0.00445	GAGGCCCCGCCCCAGTC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	92	106	+	15.7763	2.05e-06	0.0701	CAGGTGAGTCAGCAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	92	106	+	15.7763	2.05e-06	0.0701	CAGGTGAGTCAGCAT
EGR1	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	3	16	-	16.1154	2.05e-06	0.003	GCCCCGCCCCCAGA
EGR1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	55	68	-	16.1154	2.05e-06	0.003	GCCCCGCCCCCAGA
EGR1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	95	108	-	16.1154	2.05e-06	0.003	CCCCCTCCCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	20	+	16.1154	2.05e-06	0.003	CCCCCTCCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	20	+	16.1154	2.05e-06	0.003	CCCCCTCCCCCTTC
EGR1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	60	+	16.1154	2.05e-06	0.003	GCCCCGCCCCCAGA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	-	15.3091	2.05e-06	0.054	CCCCCCGGGGCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	+	15.3091	2.05e-06	0.054	CGCCCCAAGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	-	15.3091	2.05e-06	0.054	CGCCCCAAGGCG
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	44	58	-	16.1667	2.05e-06	0.0216	CTCCCGCGAGGCCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	57	71	+	16.1667	2.05e-06	0.0216	CTCCCGCGAGGCCGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	57	71	+	16.1667	2.05e-06	0.0216	CTCCCGCGAGGCCGC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	73	86	-	15.8654	2.05e-06	0.118	GGAAAGTGACTCAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	51	68	+	1.19737	2.05e-06	0.0118	GGGAGGCCGGCAGGAAGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	41	54	-	15.7241	2.05e-06	0.0732	TTTCCGGGAAGGAA
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	41	54	-	15.7241	2.05e-06	0.0732	TTTCCGGGAAGGAA
Stat4	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	61	74	+	15.7241	2.05e-06	0.0732	TTTCCGGGAAGGAA
RFX5	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	+	14.8966	2.05e-06	0.0341	CGTCGCCTTGGAAACG
RFX5	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	-	14.8966	2.05e-06	0.0341	CGTCGCCTTGGAAACG
SPIC	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	71	84	-	15.662	2.06e-06	0.0649	AAAATGAGGAAGGA
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	7	27	+	15.7653	2.06e-06	0.381	TAAATGCTTTGTCAGCAACTC
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	26	46	-	15.7653	2.06e-06	0.381	TAAATGCTTTGTCAGCAACTC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	3	20	-	14.7414	2.06e-06	0.0598	TAAGCACGCCCCCTCTGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	31	51	+	15.6531	2.06e-06	0.00237	GAGAGAGGGGGGCGAAGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	36	56	+	15.6531	2.06e-06	0.00237	GGGGGGGAAGGGGGAGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	59	79	-	15.6531	2.06e-06	0.00237	GGGGGGGAAGGGGGAGGGAGG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	17	31	+	15.431	2.07e-06	0.0186	GCCCGCCCCCGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	17	31	+	15.431	2.07e-06	0.0186	GCCCGCCCCCGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	26	40	+	15.431	2.07e-06	0.0186	GCCCGCCCCCGCCTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	26	40	+	15.431	2.07e-06	0.0186	GCCCGCCCCCGCCTC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	18	30	-	15.4694	2.07e-06	0.0498	TGCAGCTGTCCGT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	18	30	-	15.4694	2.07e-06	0.0498	TGCAGCTGTCCGT
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	83	-	15.8387	2.07e-06	0.101	GGGCGCGGCGGGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	83	-	15.8387	2.07e-06	0.101	GGGCGCGGCGGGGCGGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	83	-	15.8387	2.07e-06	0.101	GGGCGCGGCGGGGCGGGGC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	13	29	-	7.68539	2.07e-06	0.137	AGGGTTCAAAGCTCAGT
NR1H2::RXRA	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	86	102	+	7.68539	2.07e-06	0.137	AGGGTTCAAAGCTCAGT
KLF14	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	40	53	-	16.2586	2.07e-06	0.0103	CGCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	62	75	+	16.2586	2.07e-06	0.0103	CGCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	62	75	+	16.2586	2.07e-06	0.0103	CGCCCCGCCCCCTC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	68	78	-	16.0727	2.07e-06	0.0625	GGTGAGTCAGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	49	63	+	16.0286	2.07e-06	0.0701	GGGGGTCAGAAGGCA
EGR1	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	64	77	-	16.0962	2.08e-06	0.00304	CGCCCACCCCCGGC
EGR1	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	38	51	+	16.0962	2.08e-06	0.00304	CGCCCACCCCCGGC
Gabpa	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	46	56	+	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	48	58	+	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	49	59	+	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	56	66	-	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	57	67	-	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	59	69	-	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Gabpa	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	59	69	-	16.1148	2.08e-06	0.0159	CCGGAAGCGGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	7	21	+	16.0455	2.08e-06	0.143	AGGGCTGACTCAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	7	21	+	16.0455	2.08e-06	0.143	AGGGCTGACTCAGCA
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	40	-	16.7455	2.08e-06	0.0675	CATGACGTCACG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	40	-	16.7455	2.08e-06	0.0675	CATGACGTCACG
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	40	-	16.7455	2.08e-06	0.0675	CATGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	40	-	16.7455	2.08e-06	0.0675	CATGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	40	-	16.7455	2.08e-06	0.0675	CATGACGTCACG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	74	84	-	15.5918	2.08e-06	0.0989	CTGCTGGGAAA
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	74	84	-	15.5918	2.08e-06	0.0989	CTGCTGGGAAA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	25	39	+	15.7	2.09e-06	0.0633	ACCCCCCTGCTGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	25	39	+	15.7	2.09e-06	0.0633	ACCCCCCTGCTGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	25	39	+	15.7	2.09e-06	0.0633	ACCCCCCTGCTGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	25	39	+	15.7	2.09e-06	0.0633	ACCCCCCTGCTGGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	66	86	+	15.6327	2.09e-06	0.0024	TGAGAAGAAGTGGGAGGAAGA
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	44	54	-	16.4545	2.09e-06	0.148	TTTCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	44	54	-	16.4545	2.09e-06	0.148	TTTCCGGGAAG
STAT1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	61	71	+	16.4545	2.09e-06	0.148	TTTCCGGGAAG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	21	35	-	16	2.09e-06	0.167	ATGACTCTGCAGTCC
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	82	96	+	16	2.09e-06	0.167	ATGACTCTGCAGTCC
NRF1	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	2	12	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	13	23	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	4	14	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	4	14	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	19	29	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	23	33	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	26	36	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	26	36	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	26	36	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	26	36	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	26	36	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	28	38	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	28	38	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	33	43	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	33	43	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	35	45	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	35	45	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	25	35	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	28	38	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	30	40	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	41	51	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	41	51	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	42	52	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	35	45	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	38	48	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	53	63	+	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	55	65	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	55	65	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	54	64	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	67	77	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	67	77	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	67	77	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	70	80	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	70	80	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	70	80	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	70	80	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	62	72	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	62	72	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	62	72	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	62	72	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	72	82	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	72	82	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	72	82	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	72	82	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	72	82	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	78	88	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	78	88	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	77	87	-	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	79	89	-	16.1636	2.1e-06	0.00309	GCGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	82	92	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	82	92	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	82	92	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	82	92	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	86	96	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	101	111	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	104	114	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	104	114	+	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	103	113	-	16.1636	2.1e-06	0.00309	GCGCAGGCGCA
SP2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	1	15	+	16.0517	2.1e-06	0.00153	GACCCGCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	13	27	+	16.0517	2.1e-06	0.00153	AGCCCGCCTCCCCCG
SP2	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	60	+	16.0517	2.1e-06	0.00153	GTCCCGCCCACTGAC
SP2	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	55	69	-	16.0517	2.1e-06	0.00153	GTCCCGCCCACTGAC
SP2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	100	114	-	16.0517	2.1e-06	0.00153	GACCCGCCCCTGCCC
KLF14	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	30	43	+	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	22	35	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	27	40	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	40	53	+	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	52	65	+	16.2414	2.1e-06	0.0103	GACCACGCCCTCTT
KLF14	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	50	63	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	62	75	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	75	88	+	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	72	85	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	72	85	-	16.2414	2.1e-06	0.0103	GGCCCCGCCCCTCC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	1	13	+	13.8367	2.1e-06	0.224	TGGGGAAGCCCCT
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	23	40	+	1.14474	2.1e-06	0.0118	GAAGGGAGGGAAAGAAGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	8	25	-	1.14474	2.1e-06	0.0118	GAAGGGAGGGAAAGAAGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	90	107	+	1.14474	2.1e-06	0.0118	GAAGGGAGGGAAAGAAGA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	75	92	-	1.14474	2.1e-06	0.0118	GAAGGGAGGGAAAGAAGA
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	29	40	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	29	40	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	29	40	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	29	40	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	81	92	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	81	92	-	16.1538	2.1e-06	0.023	CAAAATGGCGTC
ELF4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	21	32	+	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	93	104	+	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	22	-	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	22	-	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	22	-	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	22	-	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
ELF4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	94	-	16.2787	2.1e-06	0.0343	CACCCGGAAGTC
BATF3	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	29	42	-	12.803	2.1e-06	0.057	CTATGACGTCATTA
BATF3	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	73	86	+	12.803	2.1e-06	0.057	CTATGACGTCATTA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	31	47	-	14.4909	2.1e-06	0.00455	CTCGCTCCGCCCACTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	31	47	-	14.4909	2.1e-06	0.00455	CTCGCTCCGCCCACTTC
Mitf	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	20	29	-	13.0408	2.1e-06	0.036	GATCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	20	29	-	13.0408	2.1e-06	0.036	GATCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	20	29	-	13.0408	2.1e-06	0.036	GATCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	20	29	-	13.0408	2.1e-06	0.036	GATCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	20	29	-	13.0408	2.1e-06	0.036	GATCACGTGG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	57	+	13.0408	2.1e-06	0.036	GATCACGTGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	-	16.3443	2.1e-06	0.0372	CGCCCCCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	-	16.3443	2.1e-06	0.0372	CGCCCCCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	+	16.3443	2.1e-06	0.0372	CGCCCCCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	+	16.3443	2.1e-06	0.0372	CGCCCCCGGGGCG
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	22	32	+	16.4091	2.11e-06	0.0315	GGCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	22	32	+	16.4091	2.11e-06	0.0315	GGCCCCACCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	27	37	-	16.4091	2.11e-06	0.0315	GGCCCCACCCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	58	71	-	16.0769	2.11e-06	0.00306	CCGCCGCCGCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	58	71	-	16.0769	2.11e-06	0.00306	CCGCCGCCGCCGCA
EGR1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	91	104	-	16.0769	2.11e-06	0.00306	CCGCCGCCGCCGCA
EGR1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	11	24	+	16.0769	2.11e-06	0.00306	CCGCCGCCGCCGCA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	-	16.7551	2.11e-06	0.0524	GATTACGTCACC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	-	16.7551	2.11e-06	0.0524	GATTACGTCACC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	-	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	-	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	+	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	+	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	+	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	+	16.3191	2.11e-06	0.0801	GATGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	+	16.3191	2.11e-06	0.0801	GATGACTCATG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	37	50	+	16.2241	2.11e-06	0.0103	GACCCCGCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	28	41	-	16.2241	2.11e-06	0.0103	GACCCCGCCCCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	28	41	-	16.2241	2.11e-06	0.0103	GACCCCGCCCCCCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	2	16	+	15.7105	2.12e-06	0.0701	GCTATGAGTCAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	2	16	+	15.7105	2.12e-06	0.0701	GCTATGAGTCAGCAT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	5	17	-	16.3115	2.12e-06	0.0537	TGCCCCAGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	5	17	-	16.3115	2.12e-06	0.0537	TGCCCCAGGGGCT
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	7	27	+	15.6122	2.12e-06	0.00243	GGAGGGGGGAGGGGTGGAGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	88	108	-	15.6122	2.12e-06	0.00243	GGAGGGGGGAGGGGTGGAGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	4	20	+	14.4727	2.12e-06	0.00456	CCGGACCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	4	20	+	14.4727	2.12e-06	0.00456	CCGGACCCGCCCCCACC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	14	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	14	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	6	16	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	28	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	28	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	28	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	28	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	28	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	29	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	11	21	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	11	21	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	11	21	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	11	21	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	15	25	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	15	25	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	15	25	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	35	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	15	25	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	15	25	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	16	26	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	16	26	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	16	26	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	20	30	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	20	30	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	40	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	20	30	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	20	30	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	29	39	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	31	41	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	32	42	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	32	42	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	32	42	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	32	42	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	55	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	55	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	35	45	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	73	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	73	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	60	70	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	60	70	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	80	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	86	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	75	85	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	80	90	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	104	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	85	95	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	86	96	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	87	97	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	109	+	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	101	111	-	15.9423	2.12e-06	0.00191	GCCCCGCCCCA
HEY1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	15.4727	2.12e-06	0.0767	CGCACGTGCC
HEY1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	15.4727	2.12e-06	0.0767	CGCACGTGCC
HEY1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	15.4727	2.12e-06	0.0767	CGCACGTGCC
HEY1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	15.4727	2.12e-06	0.0767	CGCACGTGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	3	20	-	1.11842	2.12e-06	0.0118	GGGAGGGAGGGAGCGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	3	20	-	1.11842	2.12e-06	0.0118	GGGAGGGAGGGAGCGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	15	32	-	1.11842	2.12e-06	0.0118	GGGAGGGAGCGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	19	36	-	1.11842	2.12e-06	0.0118	GGGAGGGAGGGAGCGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	48	+	16.0345	2.13e-06	0.00155	GCCCCACCCCATCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	48	+	16.0345	2.13e-06	0.00155	GCCCCACCCCATCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	76	+	16.0345	2.13e-06	0.00155	GCCCCACCCCATCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	76	+	16.0345	2.13e-06	0.00155	GCCCCACCCCATCCC
Tcf21	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	9	22	+	16.2237	2.13e-06	0.557	CCAACAGCTGGTAA
USF2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	31	41	-	15.8367	2.13e-06	0.0389	GGCATGTGACC
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	53	66	+	15.6897	2.13e-06	0.0732	CTTCTAGGAAGTAG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	53	66	+	15.6897	2.13e-06	0.0732	CTTCTAGGAAGTAG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	53	66	+	15.6897	2.13e-06	0.0732	CTTCTAGGAAGTAG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	53	66	+	15.6897	2.13e-06	0.0732	CTTCTAGGAAGTAG
EGR1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	16	29	-	16.0577	2.14e-06	0.00306	CTCCCTCCCACACC
EGR1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	22	35	-	16.0577	2.14e-06	0.00306	GTCCCGCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	41	54	-	16.0577	2.14e-06	0.00306	GCGCCGCCTCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	84	97	-	16.0577	2.14e-06	0.00306	CTCCCTCCCACACC
EGR1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	18	31	+	16.0577	2.14e-06	0.00306	CTCCCTCCCACACC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	61	74	+	16.0577	2.14e-06	0.00306	GCGCCGCCTCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	80	93	+	16.0577	2.14e-06	0.00306	GTCCCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	86	99	+	16.0577	2.14e-06	0.00306	CTCCCTCCCACACC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	28	42	+	16.0328	2.14e-06	0.0242	TACCACGCCCTGCCA
Klf12	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	35	49	-	16.0328	2.14e-06	0.0242	TACCACGCCCTGCCA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	66	80	+	16.0328	2.14e-06	0.0242	TACCACGCCCTGCCA
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	43	59	+	10.4394	2.14e-06	0.291	AGGTCAGGCCAAGGTCT
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	43	59	+	10.4394	2.14e-06	0.291	AGGTCAGGCCAAGGTCT
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	43	59	+	10.4394	2.14e-06	0.291	AGGTCAGGCCAAGGTCT
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	43	59	+	10.4394	2.14e-06	0.291	AGGTCAGGCCAAGGTCT
E2F6	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	5	15	-	15.8966	2.15e-06	0.022	AGGCGGGAAAG
E2F6	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	29	39	+	15.8966	2.15e-06	0.022	AGGCGGGAAAG
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	100	110	+	15.8966	2.15e-06	0.022	AGGCGGGAAAG
E2F4	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	25	35	+	15.9138	2.15e-06	0.0186	CGGCGGGAAAG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	21	40	+	13.6239	2.15e-06	0.0229	CCACCCCACCCCCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	21	40	+	13.6239	2.15e-06	0.0229	CCACCCCACCCCCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	21	40	+	13.6239	2.15e-06	0.0229	CCACCCCACCCCCCCCGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	21	40	+	13.6239	2.15e-06	0.0229	CCACCCCACCCCCCCCGCCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	34	54	+	15.5918	2.15e-06	0.00246	GGAAGTGGAGAGTGAGGAGGA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	6	19	-	16.1897	2.15e-06	0.0103	AAGCACGCCCCCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	6	19	-	16.1897	2.15e-06	0.0103	AAGCACGCCCCCTT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	28	44	-	14.4364	2.15e-06	0.00459	CAAGCCCCGCCTCCGCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	71	87	-	14.4364	2.15e-06	0.00459	CAAGCCCCGCCTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	18	-	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	18	-	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	45	55	+	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	45	55	+	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	70	-	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	97	107	+	15.7636	2.15e-06	0.0187	TCGCTTCCGGC
SP2	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	3	17	-	16.0172	2.16e-06	0.00155	TCCCCTCCCCCGCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	21	35	-	16.0172	2.16e-06	0.00155	ACCCCTCCCCCCCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	52	+	16.0172	2.16e-06	0.00155	ACCCCGCCCCCCAGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	26	40	-	16.0172	2.16e-06	0.00155	ACCCCGCCCCCCAGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	26	40	-	16.0172	2.16e-06	0.00155	ACCCCGCCCCCCAGG
SP2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	57	+	16.0172	2.16e-06	0.00155	TCCCCTCCCCCGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	41	55	-	16.0172	2.16e-06	0.00155	GCCCCGCCCCGGGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	41	55	-	16.0172	2.16e-06	0.00155	GCCCCGCCCCGGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	43	57	-	16.0172	2.16e-06	0.00155	TCCCCGCCCCTCTGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	43	57	-	16.0172	2.16e-06	0.00155	TCCCCGCCCCTCTGG
SP2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	58	72	-	16.0172	2.16e-06	0.00155	TCCCCTCCCCCGCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	100	+	16.0172	2.16e-06	0.00155	TCCCCTCCCCCGCCG
SP2	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	112	+	16.0172	2.16e-06	0.00155	TCCCCTCCCCCGCCG
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	29	43	+	15.3514	2.16e-06	0.124	GTGGGACAAGGGTGA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	28	42	-	15.3514	2.16e-06	0.124	GTGGGACAAGGGTGA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	73	87	+	15.3514	2.16e-06	0.124	GTGGGACAAGGGTGA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	72	86	-	15.3514	2.16e-06	0.124	GTGGGACAAGGGTGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	1	14	+	15.0102	2.16e-06	0.0474	GGGGCCTAGAGGGA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	29	39	+	15.3469	2.16e-06	0.0481	GACAGCTGGAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	24	34	-	15.3469	2.16e-06	0.0481	GACAGCTGGAG
Myog	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	64	+	15.3469	2.16e-06	0.0481	AGCAGCTGCGG
Myog	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	81	91	+	15.3469	2.16e-06	0.0481	GACAGCTGGAG
Myog	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	76	86	-	15.3469	2.16e-06	0.0481	GACAGCTGGAG
RFX4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	-	15.9394	2.16e-06	0.0391	CGTTTCCAAGGCGACG
RFX4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	+	15.9394	2.16e-06	0.0391	CGTTTCCAAGGCGACG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	4	17	-	15	2.17e-06	0.0474	GGGGGCGAGGGGTG
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	7	17	+	16.1455	2.17e-06	0.00317	GCGCCCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	39	49	-	16.1455	2.17e-06	0.00317	GCGCCCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	66	76	+	16.1455	2.17e-06	0.00317	GCGCCCGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	95	105	+	16.1455	2.17e-06	0.00317	GCGCCCGCGCG
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	35	49	-	15.7885	2.17e-06	0.152	GGGTCAGGGCGCCCC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	74	94	-	15.5714	2.18e-06	0.00249	GGAGGCGGGGCGGAGAGGGGC
SP8	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	35	46	-	15.7237	2.18e-06	0.00989	ACCACTCCCACT
Myod1	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	105	+	15.449	2.19e-06	0.051	AGCAGCTGCTCCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	84	101	-	1.03947	2.19e-06	0.0121	GAGAGGGGGGAAAGAAGG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	9	20	-	16.1154	2.19e-06	0.0237	CAAGATGGCCTC
YY2	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	70	80	+	15.303	2.2e-06	0.223	CTCCGCCATTA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	8	24	-	14.3818	2.2e-06	0.00464	CTGGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	8	24	-	14.3818	2.2e-06	0.00464	CTGGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	8	24	-	14.3818	2.2e-06	0.00464	CTGGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	8	24	-	14.3818	2.2e-06	0.00464	CTGGCCCCGCCCCGCCC
NR2C2	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	29	43	-	15.9429	2.2e-06	0.0701	CCGGGTCGGGGGGCA
NR2C2	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	72	86	+	15.9429	2.2e-06	0.0701	CCGGGTCGGGGGGCA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	56	67	+	16.1636	2.2e-06	0.0421	ATCCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	56	67	+	16.1636	2.2e-06	0.0421	ATCCCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	56	67	+	16.1636	2.2e-06	0.0421	ATCCCGGAAGTT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	56	67	+	16.1636	2.2e-06	0.0421	ATCCCGGAAGTT
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	12	28	-	12.2727	2.2e-06	0.264	CGGGTCACGCTGCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	28	39	-	15.6711	2.2e-06	0.00993	GCCACGCCCCGC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	30	44	+	16.0758	2.21e-06	0.0229	GTCTCACGAGATCTG
USF1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	58	-	15.9796	2.21e-06	0.0418	GCCACGTGATC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	18	38	+	15.551	2.21e-06	0.0025	GGGGGAAGGCGGAGGGATGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	40	60	+	15.551	2.21e-06	0.0025	GGGGCAAGAGGAGCGAGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	47	67	-	15.551	2.21e-06	0.0025	GGAGGATAGGGCAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	47	67	-	15.551	2.21e-06	0.0025	GGAGGATAGGGCAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	47	67	-	15.551	2.21e-06	0.0025	GGAGGATAGGGCAGGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	47	67	-	15.551	2.21e-06	0.0025	GGAGGATAGGGCAGGGAGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	54	74	-	15.551	2.21e-06	0.0025	GGGGCAAGAGGAGCGAGGGAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	35	44	+	13.2805	2.21e-06	0.241	CAAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	35	44	+	13.2805	2.21e-06	0.241	CAAATCACAG
Gfi1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	94	103	+	13.2805	2.21e-06	0.241	CAAATCACAG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	12	21	-	13.2805	2.21e-06	0.241	CAAATCACAG
SP2	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	21	35	-	15.9828	2.22e-06	0.00159	GTCCCGCCCACGGCT
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	95	111	+	13.1475	2.22e-06	0.243	AGGGCATGGAAAGGACA
Gata4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	23	33	-	15.3793	2.22e-06	0.58	TCTTATCTCCT
Gata4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	23	33	-	15.3793	2.22e-06	0.58	TCTTATCTCCT
Gata4	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	82	92	+	15.3793	2.22e-06	0.58	TCTTATCTCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	22	+	13.5413	2.22e-06	0.0229	CCCCCCCCCCCCCCCACAGT
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	45	58	+	15.6552	2.22e-06	0.0732	TTTCTAGGAAGAGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	45	58	+	15.6552	2.22e-06	0.0732	TTTCTAGGAAGAGG
ELF3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	21	33	+	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	10	22	-	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	10	22	-	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	10	22	-	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	10	22	-	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	93	105	+	16	2.22e-06	0.0804	CACCCGGAAGTCG
ELF3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	82	94	-	16	2.22e-06	0.0804	CACCCGGAAGTCG
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	-	15.4679	2.23e-06	0.224	TGACATCTGACA
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	59	75	+	10.3182	2.23e-06	0.291	AGGTCACTCGAGGCTCA
SP4	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	38	54	-	14.3455	2.23e-06	0.00469	TGGGCCCCGCCCACCAG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	17	30	+	15.7879	2.23e-06	0.198	CTGACACGTCATCC
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	17	30	+	15.7879	2.23e-06	0.198	CTGACACGTCATCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	76	86	-	15.8448	2.23e-06	0.0586	ACTCCCACGCA
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	48	56	-	13.2791	2.23e-06	0.433	GGCAGGTGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	57	65	+	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	64	72	+	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	64	72	+	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	102	110	+	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	104	112	+	12.8909	2.23e-06	0.237	GTGCCCACC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	13	21	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	13	21	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	13	21	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	13	21	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	56	64	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	56	64	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	96	104	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	96	104	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	96	104	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	96	104	+	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	96	104	+	12.1316	2.23e-06	0.117	CTGCCCGCA
NHLH1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	-	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	-	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	+	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	+	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	+	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	+	16.2241	2.23e-06	0.0545	AGCAGCTGCG
NHLH1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	+	16.2241	2.23e-06	0.0545	AGCAGCTGCG
HIC2	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	5	13	-	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	51	59	-	12.8909	2.23e-06	0.237	GTGCCCACC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	51	59	-	12.8909	2.23e-06	0.237	GTGCCCACC
THAP1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	11	19	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	15	23	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	15	23	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	15	23	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	15	23	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	58	66	-	12.1316	2.23e-06	0.117	CTGCCCGCA
THAP1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	94	102	-	12.1316	2.23e-06	0.117	CTGCCCGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	66	76	+	14.4727	2.23e-06	0.0729	AGCCGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	66	76	+	14.4727	2.23e-06	0.0729	AGCCGGAAGTA
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	51	64	+	16.3443	2.23e-06	0.365	ACTCCCCTGGGAGC
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	51	64	+	16.3443	2.23e-06	0.365	ACTCCCCTGGGAGC
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	7	25	+	15.5246	2.23e-06	0.0291	GGGCCGCCAGGGGGTGGAG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	7	25	+	15.5246	2.23e-06	0.0291	GGGCCGCCAGGGGGTGGAG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	+	16.2459	2.24e-06	0.0372	GGCCCCGGGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	-	16.2459	2.24e-06	0.0372	GGCCCCGGGGGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	38	51	-	16	2.24e-06	0.0032	CCACCGCCGCCGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	5	25	+	15.5306	2.24e-06	0.00252	GGAGGGGGGAGGAGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	70	+	15.5306	2.24e-06	0.00252	GGAGGCGGGGGAGGAAAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	70	+	15.5306	2.24e-06	0.00252	GGAGGCGGGGGAGGAAAGCGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	70	+	15.5306	2.24e-06	0.00252	GGAGGCGGGGGAGGAAAGCGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	45	65	-	15.5306	2.24e-06	0.00252	GGAGGCGGGGGAGGAAAGCGG
GSC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	97	106	-	12.5424	2.24e-06	1	GCTAATCCGC
GSC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	97	106	-	12.5424	2.24e-06	1	GCTAATCCGC
NFIA	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	18	27	+	13.6667	2.24e-06	0.595	GGTGCCAAGA
NFIA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	88	97	-	13.6667	2.24e-06	0.595	GGTGCCAAGA
NFIA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	88	97	-	13.6667	2.24e-06	0.595	GGTGCCAAGA
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	35	47	+	16.2069	2.24e-06	0.232	GGCATTTGCATAA
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	35	47	+	16.2069	2.24e-06	0.232	GGCATTTGCATAA
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	35	47	+	16.2069	2.24e-06	0.232	GGCATTTGCATAA
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	35	47	+	16.2069	2.24e-06	0.232	GGCATTTGCATAA
POU2F2	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	68	80	-	16.2069	2.24e-06	0.232	GGCATTTGCATAA
ATF7	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	27	40	+	16.5286	2.24e-06	0.0727	TCGTGACGTCATCA
ATF7	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	75	88	-	16.5286	2.24e-06	0.0727	TCGTGACGTCATCA
RFX2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	-	14.8143	2.24e-06	0.039	CGTTTCCAAGGCGACG
RFX2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	+	14.8143	2.24e-06	0.039	CGTTTCCAAGGCGACG
ELF3	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	40	52	-	15.9828	2.25e-06	0.0804	GACACGGAAGTAG
ELF3	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	63	75	+	15.9828	2.25e-06	0.0804	GACACGGAAGTAG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	26	37	+	16.1639	2.25e-06	0.0353	ATACCGGAAGTG
ELF4	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	48	59	+	16.1639	2.25e-06	0.0353	ATACCGGAAGTG
Hnf4a	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	30	45	+	13.7818	2.26e-06	0.0692	TGGGCCAAAGTCCGCG
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	70	85	-	13.7818	2.26e-06	0.0692	TGGGCCAAAGTCCGCG
Hnf4a	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	70	85	-	13.7818	2.26e-06	0.0692	TGGGCCAAAGTCCGCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	73	87	+	15.7692	2.26e-06	0.233	GAGGGTCAGAGTTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	73	87	+	15.7692	2.26e-06	0.233	GAGGGTCAGAGTTCA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	1	13	-	13.5918	2.26e-06	0.224	AGGGGCTTCCCCA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	74	86	+	16.4426	2.26e-06	0.136	GGATGATGCAAGC
ATF4	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	23	35	-	16.4426	2.26e-06	0.136	GGATGATGCAAGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	24	42	+	15.7258	2.26e-06	0.101	CGCGGCAGCCGGGCGGGGC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	15	27	+	15.9655	2.26e-06	0.0804	GACCCGGAAGTTT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	22	32	+	15.0813	2.26e-06	0.00544	TCCACGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	22	32	+	15.0813	2.26e-06	0.00544	TCCACGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	22	32	+	15.0813	2.26e-06	0.00544	TCCACGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	22	32	+	15.0813	2.26e-06	0.00544	TCCACGCCCAC
SP3	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	34	44	+	15.0813	2.26e-06	0.00544	CCCACGCCCAT
SP3	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	71	81	-	15.0813	2.26e-06	0.00544	CCCACGCCCAT
KLF16	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	30	+	16.0172	2.26e-06	0.00437	ACCACGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	32	+	16.0172	2.26e-06	0.00437	ACCACGCCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	81	+	16.0172	2.26e-06	0.00437	ACCACGCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	34	44	-	16.0172	2.26e-06	0.00437	ACCACGCCCAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	10	27	-	0.960526	2.27e-06	0.0124	GGGGGAAGGGAAGGAGGT
INSM1	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	16	27	+	16.2551	2.27e-06	0.086	GGTCAGGGGTCG
INSM1	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	88	99	-	16.2551	2.27e-06	0.086	GGTCAGGGGTCG
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	19	35	+	7.34831	2.27e-06	0.137	CGGGGTCATAGTTCAGG
Ascl2	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	-	16.2	2.27e-06	0.14	AACAGCTGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	-	16.2	2.27e-06	0.14	AACAGCTGCT
SREBF1	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	35	44	-	16.0488	2.27e-06	0.326	GTCACCCCAC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	+	16.2	2.27e-06	0.14	AACAGCTGCT
BHLHE41	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	16.8846	2.27e-06	0.0457	GGCACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	16.8846	2.27e-06	0.0457	GGCACGTGAC
SREBF1	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	71	80	+	16.0488	2.27e-06	0.326	GTCACCCCAC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	12	32	+	15.5102	2.27e-06	0.00252	AGGGGAAAAGGAGGGGGTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	12	32	+	15.5102	2.27e-06	0.00252	AGGGGAAAAGGAGGGGGTGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	14	34	+	15.5102	2.27e-06	0.00252	TGGGGTGGGAGGAGAGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	35	55	+	15.5102	2.27e-06	0.00252	GGGGCCGGAGAGGAGAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	35	55	+	15.5102	2.27e-06	0.00252	GGGGCCGGAGAGGAGAGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	52	72	+	15.5102	2.27e-06	0.00252	GGGGCCGGAGAGGAGAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	43	63	-	15.5102	2.27e-06	0.00252	GGGGCCGGAGAGGAGAGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	43	63	-	15.5102	2.27e-06	0.00252	GGGGCCGGAGAGGAGAGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	57	77	-	15.5102	2.27e-06	0.00252	GGAGGGCGAGGAGGAGAAGGA
CEBPA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	25	35	-	15.4286	2.27e-06	0.431	ATTGCACAACT
CEBPA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	25	35	-	15.4286	2.27e-06	0.431	ATTGCACAACT
CEBPA	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	112	+	15.4286	2.27e-06	0.431	ATTGCACAACT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	2	15	-	15.9808	2.27e-06	0.00321	CTCCCTCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	2	15	-	15.9808	2.27e-06	0.00321	CTCCCTCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	17	30	-	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	17	30	-	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	83	96	-	15.9808	2.27e-06	0.00321	CCTCCGCCGCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	84	97	-	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	31	+	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	31	+	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
EGR1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	98	+	15.9808	2.27e-06	0.00321	ACCCCGCCCCCTGC
Myog	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	47	+	15.3265	2.28e-06	0.0481	GGCAGCTGCCG
Myog	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	68	78	-	15.3265	2.28e-06	0.0481	GGCAGCTGCCG
FOSL1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	4	14	+	16.0182	2.28e-06	0.0625	AGTGACTCAGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	72	82	-	16.0182	2.28e-06	0.0625	AGTGACTCAGG
FOSL1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	101	111	-	16.0182	2.28e-06	0.0625	AGTGACTCAGG
ZBTB18	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	28	40	-	16.3571	2.28e-06	0.641	CCTCCAGATGTTC
ZBTB18	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	75	87	+	16.3571	2.28e-06	0.641	CCTCCAGATGTTC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	20	31	+	15.6316	2.28e-06	0.0102	ACCACCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	31	+	15.6316	2.28e-06	0.0102	ACCACCCCCCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	39	+	15.9483	2.28e-06	0.00163	TCCCCTCCCCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	36	50	+	15.9483	2.28e-06	0.00163	GCTCCTCCTCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	38	52	-	15.9483	2.28e-06	0.00163	GCTCCTCCTCCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	38	52	-	15.9483	2.28e-06	0.00163	GCTCCTCCTCCCCCC
SP2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	63	77	+	15.9483	2.28e-06	0.00163	GCTCCTCCTCCCCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	65	79	-	15.9483	2.28e-06	0.00163	GCTCCTCCTCCCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	111	+	15.9483	2.28e-06	0.00163	TCCCCTCCCCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	111	+	15.9483	2.28e-06	0.00163	TCCCCTCCCCCTCCT
RREB1	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	8	27	+	13.4771	2.28e-06	0.0229	ACCCTCAACACCCACTCCCT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	44	63	+	13.4771	2.28e-06	0.0229	CCCCACCCCCACCCCTCTCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	44	63	+	13.4771	2.28e-06	0.0229	CCCCACCCCCACCCCTCTCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	61	80	-	13.4771	2.28e-06	0.0229	ACCCTCAACACCCACTCCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	61	80	-	13.4771	2.28e-06	0.0229	ACCCTCAACACCCACTCCCT
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	56	66	+	16.0909	2.28e-06	0.00332	GAGCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	56	66	+	16.0909	2.28e-06	0.00332	GAGCCTGCGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	32	43	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	32	43	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	32	43	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	32	43	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	37	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	43	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	72	83	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	78	89	+	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	83	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	90	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	90	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	90	-	16.0909	2.29e-06	0.0421	GCCCCGGAAGTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	25	41	+	14.2727	2.29e-06	0.00479	CTGGCTCCGCCCACCGC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	25	41	+	14.2727	2.29e-06	0.00479	CTGGCTCCGCCCACCGC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	74	90	-	14.2727	2.29e-06	0.00479	CTGGCTCCGCCCACCGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	13	26	+	16.0862	2.3e-06	0.0105	GACCACGCCCCCGG
EGR4	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	35	50	+	15.7091	2.3e-06	0.0258	CCCCGCCCCCGCTCTC
EGR4	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	65	80	-	15.7091	2.3e-06	0.0258	CCCCGCCCCCGCTCTC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	12	+	16.5918	2.3e-06	0.0524	TATGACGTCATT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	12	+	16.5918	2.3e-06	0.0524	TATGACGTCATT
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	40	-	16.5918	2.3e-06	0.0524	GGTGACGTCATC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	41	-	16.5918	2.3e-06	0.0524	TATGACGTCATT
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	85	+	16.5918	2.3e-06	0.0524	TATGACGTCATT
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	103	114	-	16.5918	2.3e-06	0.0524	TATGACGTCATT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	69	-	13.9091	2.3e-06	0.0557	TGAAAGAGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	99	112	+	13.9091	2.3e-06	0.0557	GAAAAGCAGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	99	112	+	13.9091	2.3e-06	0.0557	GAAAAGCAGAAGTG
NR1H2::RXRA	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	3	19	+	7.29213	2.3e-06	0.137	CAAGTTCATTGGTCAGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	5	18	-	15.9615	2.3e-06	0.00321	CCCCCACCCCCTGA
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	35	48	-	15.9615	2.3e-06	0.00321	CCGCCGCCGCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	35	48	-	15.9615	2.3e-06	0.00321	CCGCCGCCGCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	65	78	-	15.9615	2.3e-06	0.00321	CCGCCGCCGCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	67	80	+	15.9615	2.3e-06	0.00321	CCGCCGCCGCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	92	105	+	15.9615	2.3e-06	0.00321	CCGCCGCCGCCTCC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	41	-	15.4898	2.3e-06	0.00255	GGGGGGGGGGGGGGGGGGTGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	57	77	+	15.4898	2.3e-06	0.00255	GGGGAAGGGGAGGTGGGAGAG
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	1	13	+	16.1633	2.3e-06	0.297	TAAATGAGGTCAT
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	1	13	+	16.1633	2.3e-06	0.297	TAAATGAGGTCAT
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	1	11	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	24	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	26	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	28	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	10	20	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	10	20	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	10	20	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	10	20	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	13	23	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	13	23	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	18	28	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	21	31	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	21	31	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	41	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	41	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	44	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	51	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	51	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	32	42	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	32	42	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	55	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	55	65	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	45	55	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	49	59	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	49	59	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	70	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	60	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	60	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	60	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	61	71	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	61	71	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	52	62	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	52	62	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	52	62	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	52	62	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	69	79	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	83	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	65	75	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	65	75	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	68	78	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	71	81	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	84	-	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	102	+	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	105	+	15.9038	2.31e-06	0.00198	CCCCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	91	101	-	15.9038	2.31e-06	0.00198	CTCCCGCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	27	+	15.931	2.31e-06	0.00164	ACCCCGCCCCCAACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	27	+	15.931	2.31e-06	0.00164	ACCCCGCCCCCAACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	27	+	15.931	2.31e-06	0.00164	ACCCCGCCCCCAACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	27	+	15.931	2.31e-06	0.00164	ACCCCGCCCCCAACC
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	19	33	+	15.931	2.31e-06	0.00164	TCTCCGCCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	22	36	+	15.931	2.31e-06	0.00164	CCCCCGCCTCTCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	22	36	+	15.931	2.31e-06	0.00164	CCCCCGCCTCTCTGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	36	+	15.931	2.31e-06	0.00164	GCCCCTCCCTCTCCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	20	37	+	0.907895	2.32e-06	0.0125	GAGGGAAAGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	61	78	-	0.907895	2.32e-06	0.0125	GAGGGAAAGGAAGGCGGG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	9	23	-	15.8909	2.32e-06	0.188	TGAAAGCGAAAGTAA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	21	35	-	15.8909	2.32e-06	0.188	TGAAAGCGAAAGTAA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	21	35	-	15.8909	2.32e-06	0.188	TGAAAGCGAAAGTAA
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	17	32	+	15.6909	2.32e-06	0.0258	GCCCGCCCCCGCCTCT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	17	32	+	15.6909	2.32e-06	0.0258	GCCCGCCCCCGCCTCT
Vdr	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	35	50	-	14.0164	2.33e-06	0.291	GAGGTCGCCAGGGTCA
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	65	80	+	14.0164	2.33e-06	0.291	GAGGTCGCCAGGGTCA
Vdr	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	65	80	+	14.0164	2.33e-06	0.291	GAGGTCGCCAGGGTCA
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	44	59	-	13.2414	2.33e-06	0.231	CTCCCAGCATGCCACG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	44	59	-	13.2414	2.33e-06	0.231	CTCCCAGCATGCCACG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	+	16.1724	2.33e-06	0.0343	GGCCCCGGGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	-	16.1724	2.33e-06	0.0343	GGCCCCGGGGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	4	24	-	15.4694	2.33e-06	0.00255	GAGGGAGAGCGAAGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	43	63	+	15.4694	2.33e-06	0.00255	AGAGGAGAGAGGAAGAGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	43	63	+	15.4694	2.33e-06	0.00255	AGAGGAGAGAGGAAGAGGAAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	32	52	-	15.4694	2.33e-06	0.00255	GGGAGAGCGGGGGCGGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	53	73	+	15.4694	2.33e-06	0.00255	GGAGAAAGAGGAGGAGTAAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	35	55	-	15.4694	2.33e-06	0.00255	AGAGGAGAGAGGAAGAGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	35	55	-	15.4694	2.33e-06	0.00255	AGAGGAGAGAGGAAGAGGAAG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	60	80	+	15.4694	2.33e-06	0.00255	AGAGGAGAGAGGAAGAGGAAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	63	83	+	15.4694	2.33e-06	0.00255	GGGAGAGCGGGGGCGGGGAGG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	10	22	+	13.4082	2.33e-06	0.224	CGGGGAGTCCCCG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	10	22	+	13.4082	2.33e-06	0.224	CGGGGAGTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	10	22	+	13.4082	2.33e-06	0.224	CGGGGAGTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	10	22	+	13.4082	2.33e-06	0.224	CGGGGAGTCCCCG
MEF2A	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	13	24	+	16.4032	2.33e-06	0.122	CCTAAAAATAGC
MEF2A	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	91	102	-	16.4032	2.33e-06	0.122	CCTAAAAATAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	23	32	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	23	32	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	36	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	36	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	54	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	62	71	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	62	71	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	62	71	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	76	-	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	2	11	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	27	36	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	39	48	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	39	48	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	44	53	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	45	54	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	61	70	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	61	70	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	79	88	+	16.2959	2.34e-06	0.00384	AGGGTGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	-	16.1639	2.34e-06	0.0372	GGCCCTCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	-	16.1639	2.34e-06	0.0372	GGCCCTCGGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	+	16.1639	2.34e-06	0.0372	GGCCCTCGGGGCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	29	43	-	15.5	2.34e-06	0.0642	CCCGCCCCGCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	29	43	-	15.5	2.34e-06	0.0642	CCCGCCCCGCTGCGC
SP2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	2	16	-	15.9138	2.34e-06	0.00164	CCCCCGCCCCCAAGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	3	17	-	15.9138	2.34e-06	0.00164	AGCCCGCCCCTTCCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	3	17	-	15.9138	2.34e-06	0.00164	AGCCCGCCCCTTCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	39	53	+	15.9138	2.34e-06	0.00164	AGCCCGCCCCTTCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	41	55	-	15.9138	2.34e-06	0.00164	GTTCCGCCCCCGCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	41	55	-	15.9138	2.34e-06	0.00164	GTTCCGCCCCCGCGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	41	55	-	15.9138	2.34e-06	0.00164	GTTCCGCCCCCGCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	41	55	-	15.9138	2.34e-06	0.00164	GTTCCGCCCCCGCGT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	62	76	-	15.9138	2.34e-06	0.00164	AGCCCGCCCCTTCCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	62	76	-	15.9138	2.34e-06	0.00164	AGCCCGCCCCTTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	113	+	15.9138	2.34e-06	0.00164	CCCCCGCCCCCAAGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	113	+	15.9138	2.34e-06	0.00164	CCCCCGCCCCCAAGC
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	20	35	+	13.6909	2.34e-06	0.0692	GGGGTCATAGTTCAGG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	73	86	+	15.6207	2.34e-06	0.0734	TTTCCAGGAAGGGT
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	36	+	16.5102	2.34e-06	0.0524	GCTGACGTCATC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	40	+	16.5102	2.34e-06	0.0524	GCTGACGTCATC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	38	-	16.5102	2.34e-06	0.0524	GCTGACGTCATC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	88	+	16.5102	2.34e-06	0.0524	GCTGACGTCATC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	18	36	+	15.4426	2.34e-06	0.0291	GGGCCAGCCGGGGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	18	36	+	15.4426	2.34e-06	0.0291	GGGCCAGCCGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	18	36	+	15.4426	2.34e-06	0.0291	GGGCCAGCCGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	18	36	+	15.4426	2.34e-06	0.0291	GGGCCAGCCGGGGGCGGGG
KLF14	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	53	66	+	16.0517	2.35e-06	0.0105	GGCCCCGCCCCCGT
KLF14	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	49	62	-	16.0517	2.35e-06	0.0105	GGCCCCGCCCCCGT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	73	87	+	15.8033	2.35e-06	0.167	ATGACTCAGCCAGTT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	73	87	+	15.8033	2.35e-06	0.167	ATGACTCAGCCAGTT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	11	25	+	15.8361	2.35e-06	0.0254	CGCCACGCCCTCCTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	26	40	+	15.8361	2.35e-06	0.0254	CGCCACGCCCTCCTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	74	87	+	15.9231	2.36e-06	0.00327	GCTCCTCCCACTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	74	87	+	15.9231	2.36e-06	0.00327	GCTCCTCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	74	87	+	15.9231	2.36e-06	0.00327	GCTCCTCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	74	87	+	15.9231	2.36e-06	0.00327	GCTCCTCCCACTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	12	23	-	15.5921	2.36e-06	0.0102	GACCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	12	23	-	15.5921	2.36e-06	0.0102	GACCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	12	23	-	15.5921	2.36e-06	0.0102	GACCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	33	44	-	15.5921	2.36e-06	0.0102	GCCACACCCACC
SP8	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	71	82	+	15.5921	2.36e-06	0.0102	GCCACACCCACC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	60	70	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	60	70	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	70	80	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	70	80	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	70	80	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	70	80	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	72	82	+	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	33	43	-	16.1061	2.36e-06	0.0315	AGCCCCACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	75	85	-	16.1061	2.36e-06	0.0315	AGCCCCACCCA
SP4	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	12	28	+	14.2	2.36e-06	0.00491	AAAGCTCCGCCCCCAGC
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	87	98	+	16	2.36e-06	0.0249	TAAAATGGCGGC
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	87	98	+	16	2.36e-06	0.0249	TAAAATGGCGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	39	59	+	15.449	2.36e-06	0.00258	CGGGGAGGAGGGGGGAAGGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	88	108	-	15.449	2.36e-06	0.00258	AGGGGAAGGGGACGAGGAAAG
Gmeb1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	70	86	-	12.7632	2.36e-06	0.248	GCGCTGACGTCAGATGT
Gmeb1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	70	86	-	12.7632	2.36e-06	0.248	GCGCTGACGTCAGATGT
Klf12	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	13	27	+	15.8197	2.37e-06	0.0254	GACCACGCCCCCGGC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	17	31	-	15.8636	2.37e-06	0.143	CACTGTGACCCAGCA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	4	17	+	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	4	17	+	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
KLF14	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	56	69	+	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	46	59	-	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	46	59	-	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
KLF14	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	98	111	-	16.0345	2.37e-06	0.0105	GCCCACGCCCCTTT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	69	+	15.4714	2.37e-06	0.0642	GCCCCCCCCCCGCGC
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	81	+	15.1207	2.37e-06	0.128	TGCCACGTGCCT
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	81	+	15.1207	2.37e-06	0.128	TGCCACGTGCCT
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	81	+	15.1207	2.37e-06	0.128	TGCCACGTGCCT
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	81	+	15.1207	2.37e-06	0.128	TGCCACGTGCCT
HES5	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	45	-	15.1207	2.37e-06	0.128	TGCCACGTGCCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	-	16.1552	2.37e-06	0.0343	GGCCCTCGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	-	16.1552	2.37e-06	0.0343	GGCCCTCGGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	+	16.1552	2.37e-06	0.0343	GGCCCTCGGGGCG
FOS	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	+	15.5532	2.37e-06	0.104	GCTGACTCATT
SP2	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	42	+	15.8966	2.37e-06	0.00165	TTCCCGCCCCCGGAC
SP2	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	29	43	+	15.8966	2.37e-06	0.00165	GTCCCTCCCCGCCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	56	70	+	15.8966	2.37e-06	0.00165	CGCCCGCCCCCGGCT
SP2	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	59	-	15.8966	2.37e-06	0.00165	CGCCCGCCCCCGGCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	50	64	-	15.8966	2.37e-06	0.00165	GCCCCGCCCATCACG
SP2	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	72	86	-	15.8966	2.37e-06	0.00165	GTCCCTCCCCGCCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	26	37	-	15.7286	2.38e-06	0.217	TGCGCCCACCGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	26	37	-	15.7286	2.38e-06	0.217	TGCGCCCACCGG
Rfx1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	69	82	+	15.8103	2.38e-06	0.0386	GTTGCCGTGGCGAC
Gabpa	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	75	85	+	16.0492	2.38e-06	0.0162	CCGGAAGTGCT
Gabpa	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	30	40	-	16.0492	2.38e-06	0.0162	CCGGAAGTGCT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	49	59	-	16.0492	2.38e-06	0.0162	CCGGAAGTGCT
SP1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	19	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	5	15	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	5	15	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	6	16	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	26	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	26	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	28	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	13	23	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	35	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	35	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	38	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	20	30	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	20	30	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	22	32	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	24	34	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	24	34	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	24	34	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	31	41	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	34	44	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	34	44	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	34	44	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	34	44	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	81	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	87	97	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	99	109	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	110	+	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	96	106	-	15.8846	2.38e-06	0.00199	GGCCCGCCCCC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	79	93	+	16.0172	2.39e-06	0.208	CAGACCAAGGTCAGC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	79	93	+	16.0172	2.39e-06	0.208	CAGACCAAGGTCAGC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	79	93	+	16.0172	2.39e-06	0.208	CAGACCAAGGTCAGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	79	93	+	16.0172	2.39e-06	0.208	CAGACCAAGGTCAGC
Nr5a2	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	22	36	-	16.0172	2.39e-06	0.208	CAGACCAAGGTCAGC
EGR4	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	62	77	+	15.6545	2.39e-06	0.0258	CTCCGCCCACCCCCAA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	21	34	-	15.9038	2.39e-06	0.0033	GTTCCACCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	21	34	-	15.9038	2.39e-06	0.0033	GTTCCACCCCCTCC
Stat4	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	7	20	-	15.6034	2.39e-06	0.0734	TTGCCAGGAAGTGG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	+	16.1639	2.39e-06	0.0537	CGCCCCCAGGGCG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	28	41	-	14.6327	2.39e-06	0.365	TGGCCTCTCGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	28	41	-	14.6327	2.39e-06	0.365	TGGCCTCTCGCCAA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	+	16.1148	2.39e-06	0.0372	CGCCCCCAGGGCG
RFX5	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	-	14.5862	2.39e-06	0.0375	AGTCGCCACGGCAACC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	29	49	+	15.4286	2.39e-06	0.00261	GAGGGATGGGAACGGGGGAGA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	19	29	+	16	2.4e-06	0.00339	CCGCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	19	29	+	16	2.4e-06	0.00339	CCGCCTGCGCA
NFYB	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	64	78	+	16.0577	2.4e-06	0.0551	GGCCGGGCCAATCGG
NFYB	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	37	51	-	16.0577	2.4e-06	0.0551	GGCCGGGCCAATCGG
FOSL2	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	15	25	+	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	16	26	+	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	16	26	+	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	71	81	+	15.6727	2.4e-06	0.0613	CGGTGACTCAG
ERG	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	15.3818	2.4e-06	0.0626	ACCGGAAATG
ERG	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	15.3818	2.4e-06	0.0626	ACCGGAAATG
ELF5	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	26	36	+	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
ELF5	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	65	75	+	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
RELA	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	59	68	+	16.2959	2.4e-06	0.15	GGGAGTTTCC
ETV5	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	13.7091	2.4e-06	0.0501	ACCGGATGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.5915	2.4e-06	0.0449	ACCGGAAGTC
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	14	24	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	34	44	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	34	44	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	90	100	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	97	107	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	97	107	-	15.6727	2.4e-06	0.0613	CGGTGACTCAG
FEV	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.3462	2.4e-06	0.059	ACCGGAAGTC
ELF5	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	26	-	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	51	-	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	51	-	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	89	-	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	89	-	14.4182	2.4e-06	0.0729	AGCCGGAAGTG
TFE3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	14.1837	2.4e-06	0.037	GTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	14.1837	2.4e-06	0.037	GTCACGTGAC
ETV3	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.5915	2.4e-06	0.0449	ACCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.5915	2.4e-06	0.0449	ACCGGAAGTC
TFEB	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	15.2308	2.4e-06	0.0484	ACCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	15.2308	2.4e-06	0.0484	ACCACGTGAC
ERG	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	15.3818	2.4e-06	0.0626	ACCGGAAATG
ERG	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	15.3818	2.4e-06	0.0626	ACCGGAAATG
FEV	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.3462	2.4e-06	0.059	ACCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.3462	2.4e-06	0.059	ACCGGAAGTC
Sox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	51	65	+	2.92857	2.4e-06	1	AACAACCCCAGTGTT
Sox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	51	65	+	2.92857	2.4e-06	1	AACAACCCCAGTGTT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	+	16.7755	2.41e-06	0.134	GATGAGTCATC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	31	+	15.8793	2.41e-06	0.00167	GCCCCTCCCCGGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	31	+	15.8793	2.41e-06	0.00167	GCCCCTCCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	43	57	-	15.8793	2.41e-06	0.00167	TCCCCGCCCCTTTGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	43	57	-	15.8793	2.41e-06	0.00167	TCCCCGCCCCTTTGG
SP2	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	84	98	-	15.8793	2.41e-06	0.00167	GCCCCTCCCCGGCCC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	54	68	-	15.7455	2.41e-06	0.0875	GACCCCCCGCCGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	54	68	-	15.7455	2.41e-06	0.0875	GACCCCCCGCCGTCG
KLF14	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	28	41	-	16	2.41e-06	0.0105	TGCCCCGCCCCTTC
KLF14	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	56	69	+	16	2.41e-06	0.0105	TGCCCCGCCCCTTC
KLF14	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	46	59	-	16	2.41e-06	0.0105	TGCCCCGCCCCTTC
RFX2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	+	14.6571	2.42e-06	0.0404	CGTCGCCTTGGAAACG
RFX2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	-	14.6571	2.42e-06	0.0404	CGTCGCCTTGGAAACG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	11	25	+	15.7541	2.42e-06	0.167	CTGACTCAGCACCTT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	11	25	+	15.7541	2.42e-06	0.167	CTGACTCAGCACCTT
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	88	105	-	15.8415	2.42e-06	0.027	CGAGTTCCGATTGGCTCT
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	88	105	-	15.8415	2.42e-06	0.027	CGAGTTCCGATTGGCTCT
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	88	105	-	15.8415	2.42e-06	0.027	CGAGTTCCGATTGGCTCT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	88	105	-	15.8415	2.42e-06	0.027	CGAGTTCCGATTGGCTCT
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	43	57	+	15.2252	2.42e-06	0.124	CGAGGTCAGGGGTCA
TGIF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	-	12.3654	2.42e-06	0.231	TGCCAGCTGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	-	12.3654	2.42e-06	0.231	TGCCAGCTGTCA
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	-	15.0306	2.42e-06	0.0857	TGCCCTAGGGCT
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	+	15.0306	2.42e-06	0.0857	TGCCCTAGGGCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	26	42	-	14.1273	2.43e-06	0.00499	CTGACTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	26	42	-	14.1273	2.43e-06	0.00499	CTGACTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	26	42	-	14.1273	2.43e-06	0.00499	CTGACTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	26	42	-	14.1273	2.43e-06	0.00499	CTGACTCCGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	22	35	-	15.8846	2.43e-06	0.00332	CCCCCGCCGCCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	22	35	-	15.8846	2.43e-06	0.00332	CCCCCGCCGCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	50	63	-	15.8846	2.43e-06	0.00332	GCTCCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	50	63	-	15.8846	2.43e-06	0.00332	GCTCCGCCCCCAGC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	61	74	-	15.8846	2.43e-06	0.00332	GCGCCTCCCCCGGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	28	+	15.8846	2.43e-06	0.00332	GCTCCGCCCCCAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	12	32	+	15.4082	2.43e-06	0.00263	CGGGGAGGCGGAGGGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	12	32	+	15.4082	2.43e-06	0.00263	CGGGGAGGCGGAGGGGAGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	48	68	+	15.4082	2.43e-06	0.00263	GAGGGAGAGGAAGAGGAAGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	56	76	+	15.4082	2.43e-06	0.00263	GAGGGAGAGGAAGAGGAAGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	39	59	-	15.4082	2.43e-06	0.00263	GAGGGAGAGGAAGAGGAAGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	47	67	-	15.4082	2.43e-06	0.00263	GAGGGAGAGGAAGAGGAAGAG
IRF9	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	22	36	+	10.2182	2.43e-06	0.158	TGGGAAACTGAAACT
IRF9	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	12	26	-	10.2182	2.43e-06	0.158	TGGGAAACTGAAACT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	28	47	+	13.3211	2.43e-06	0.023	ACCCCCCCCGCCCCCCGCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	28	47	+	13.3211	2.43e-06	0.023	ACCCCCCCCGCCCCCCGCGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	28	47	+	13.3211	2.43e-06	0.023	ACCCCCCCCGCCCCCCGCGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	25	+	16.1475	2.43e-06	0.0537	TGCCCGGGGGGCG
FOXC2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	54	65	-	14.5446	2.44e-06	0.528	TAAGTAAACAAC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	+	15.1455	2.44e-06	0.054	CGCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	+	15.1455	2.44e-06	0.054	CGCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	-	15.1455	2.44e-06	0.054	CGCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	-	15.1455	2.44e-06	0.054	CGCCCGCGGGCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	17	30	+	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	17	30	+	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	18	31	-	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	18	31	-	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
KLF14	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	84	97	+	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
KLF14	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	85	98	-	15.9828	2.44e-06	0.0105	GACCCCGCCCCCTG
IRF1	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	12	32	+	15.7581	2.44e-06	0.0724	TTCCTCTTCCACTTTCTCTAC
IRF1	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	53	73	-	15.7581	2.44e-06	0.0724	TTCCTCTTCCACTTTCTCTAC
IRF1	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	83	103	-	15.7581	2.44e-06	0.0724	TTCCTCTTCCACTTTCTCTAC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	+	15.9273	2.45e-06	0.0625	GGTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	+	15.9273	2.45e-06	0.0625	GGTGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	+	15.9273	2.45e-06	0.0625	GGTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	+	15.9273	2.45e-06	0.0625	GGTGAGTCAGC
SP8	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	54	65	+	15.5263	2.45e-06	0.0104	GACCCGCCCACC
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	27	41	+	15.5968	2.45e-06	0.559	TTTTCAAATGCAGAT
RUNX3	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	4	13	-	14.9038	2.45e-06	0.439	AAACCACAAA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	37	+	14.9836	2.45e-06	0.126	GATGACGTAA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	37	+	14.9836	2.45e-06	0.126	GATGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	37	+	14.9836	2.45e-06	0.126	GATGACGTAA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	37	+	14.9836	2.45e-06	0.126	GATGACGTAA
Crem	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	80	89	+	14.9836	2.45e-06	0.126	GATGACGTAA
RUNX3	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	102	111	+	14.9038	2.45e-06	0.439	AAACCACAAA
Crem	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	26	35	-	14.9836	2.45e-06	0.126	GATGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	26	35	-	14.9836	2.45e-06	0.126	GATGACGTAA
NFYA	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	64	81	-	15.8171	2.46e-06	0.027	GCCGCGCTGATTGGCTGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	29	49	+	15.3878	2.46e-06	0.00266	GGGGCAGGAGACAAGGGGAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	68	88	-	15.3878	2.46e-06	0.00266	AGTGGAGAGGGCGAGGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	76	93	-	0.75	2.46e-06	0.0131	CAAGGGGAGGAAGGAAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	76	93	-	0.75	2.46e-06	0.0131	CAAGGGGAGGAAGGAAGC
RFX5	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	13	28	-	14.5172	2.47e-06	0.0375	CGTTTCCAAGGCGACG
RFX5	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	87	102	+	14.5172	2.47e-06	0.0375	CGTTTCCAAGGCGACG
SP3	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	13	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	23	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	23	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	23	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	23	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	28	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	28	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	48	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	70	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	87	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	95	+	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	15	25	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	15	25	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	20	30	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	20	30	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	28	38	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	30	40	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	30	40	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	87	97	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	102	112	-	15.0325	2.47e-06	0.00559	ACCCCGCCCCC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	64	78	+	15.7091	2.47e-06	0.0875	TGCCACCTGCTGGGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	92	106	+	15.7091	2.47e-06	0.0875	TGCCACCTGCTGGGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	14	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	15	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	15	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	28	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	28	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	28	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	40	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	65	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	65	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	77	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	92	+	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	28	38	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	28	38	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	28	38	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	38	48	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	42	52	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	50	60	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	54	64	-	15.9483	2.47e-06	0.00437	GCCCCTCCCCC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	15	29	-	15.8182	2.47e-06	0.188	GTAAAGTGAAAGCGA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	27	41	-	15.8182	2.47e-06	0.188	GTAAAGTGAAAGCGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	27	41	-	15.8182	2.47e-06	0.188	GTAAAGTGAAAGCGA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	7	20	+	15.8654	2.47e-06	0.00337	GCACCTCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	7	20	+	15.8654	2.47e-06	0.00337	GCACCTCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	7	20	+	15.8654	2.47e-06	0.00337	GCACCTCCCCCGCG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	24	33	+	13.6061	2.47e-06	0.0509	CGAGGGGGAA
TCF3	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	66	75	+	13.9038	2.47e-06	0.183	CACACCTGCG
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	15.3462	2.47e-06	0.1	CGCACGTGCC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	15.3462	2.47e-06	0.1	CGCACGTGCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	15.3462	2.47e-06	0.1	CGCACGTGCC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	15.3462	2.47e-06	0.1	CGCACGTGCC
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	82	91	-	13.6061	2.47e-06	0.0509	CGAGGGGGAA
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	7	27	-	13.2755	2.47e-06	0.0963	GGTAGCACCGTGGAGAGAAAA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	7	27	-	13.2755	2.47e-06	0.0963	GGTAGCACCGTGGAGAGAAAA
NFYA	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	34	51	+	15.8049	2.47e-06	0.027	ATCCCTCTCATTGGCGGA
SP1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	2	12	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	8	18	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	17	27	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	21	31	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	23	33	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	29	39	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	35	45	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	38	48	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	51	-	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	69	+	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	94	+	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	113	+	15.8462	2.48e-06	0.00204	CCCCCACCCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	29	45	-	14.0727	2.48e-06	0.00508	GAGGCCCCGCCCCAGCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	28	47	+	13.2752	2.48e-06	0.023	ACCCCCCCCCCCCCCCGCGC
SP2	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	24	+	15.8448	2.48e-06	0.00171	TCCCCGCCCCCGGAG
SP2	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	16	30	+	15.8448	2.48e-06	0.00171	CCTCCGCCCCTCGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	32	+	15.8448	2.48e-06	0.00171	GCCCCTCCCCGCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	32	+	15.8448	2.48e-06	0.00171	GCCCCTCCCCGCCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	29	43	+	15.8448	2.48e-06	0.00171	GCCCCTCCTCTTCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	23	37	-	15.8448	2.48e-06	0.00171	CCCCCGCCCCCCAAG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	76	+	15.8448	2.48e-06	0.00171	CCCCCGCCCCCCAAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	28	38	+	15.5714	2.48e-06	0.0785	GGATGAGTCAT
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	15	26	+	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	15	26	+	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	22	33	-	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	22	33	-	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
INSM1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	82	93	+	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
INSM1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	89	100	-	16.1224	2.49e-06	0.086	GGGCAGGGGGCG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	27	40	-	15.9483	2.49e-06	0.0105	TGCCCCGCCCACAT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	27	40	-	15.9483	2.49e-06	0.0105	TGCCCCGCCCACAT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	42	+	13.8276	2.49e-06	0.129	CGGCACGTGGCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	42	+	13.8276	2.49e-06	0.129	CGGCACGTGGCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	42	+	13.8276	2.49e-06	0.129	CGGCACGTGGCG
ATF4	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	9	21	+	16.2623	2.49e-06	0.136	GTCTGATGCAACA
ATF4	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	94	106	-	16.2623	2.49e-06	0.136	GTCTGATGCAACA
Six3	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	42	58	+	15.7763	2.49e-06	1	GCTGGGGTATCAATAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	12	32	-	15.3673	2.49e-06	0.00268	GGGGGAGCTGGGAAGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	12	32	-	15.3673	2.49e-06	0.00268	GGGGGAGCTGGGAAGAGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	62	82	-	15.3673	2.49e-06	0.00268	TGTGGCGGGAGGAAAGGAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	83	103	+	15.3673	2.49e-06	0.00268	GGGGGAGCTGGGAAGAGGAGG
Klf12	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	33	47	+	15.7049	2.49e-06	0.0254	GACCCCGCCCTTCCA
Klf12	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	56	70	+	15.7049	2.49e-06	0.0254	GACCCCGCCCTTCCA
Klf12	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	45	59	-	15.7049	2.49e-06	0.0254	GACCCCGCCCTTCCA
Klf12	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	68	82	-	15.7049	2.49e-06	0.0254	GACCCCGCCCTTCCA
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	7	23	-	14.0545	2.49e-06	0.00509	GATGCCCCGCCCCTGCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	76	92	+	14.0545	2.49e-06	0.00509	GATGCCCCGCCCCTGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	37	46	+	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	45	54	+	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	37	46	-	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	54	63	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	45	54	-	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	56	65	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	61	70	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	54	63	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	56	65	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	61	70	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	84	93	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	84	93	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	84	93	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	84	93	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	100	109	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	100	109	+	10.8387	2.49e-06	0.0189	AGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	100	109	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	100	109	-	10.8387	2.49e-06	0.0189	GGCGCGCGCT
KLF5	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	2	11	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	23	32	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	23	32	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	36	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	36	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	27	36	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	54	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	39	48	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	39	48	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	44	53	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	45	54	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	62	71	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	62	71	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	62	71	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	76	+	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	61	70	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	61	70	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	79	88	-	15.9592	2.49e-06	0.00303	GCCCCACCCT
GLI2	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	6	17	-	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	98	109	+	15.8966	2.5e-06	0.164	GCGCCCACGCTG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	+	16.0164	2.51e-06	0.0372	GGCCCCGAGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	+	16.0164	2.51e-06	0.0372	GGCCCCGAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	+	16.0164	2.51e-06	0.0372	GGCCCCGAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	+	16.0164	2.51e-06	0.0372	GGCCCCGAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	+	16.0164	2.51e-06	0.0372	GGCCCCGAGGGCG
CTCF	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	22	40	-	15.3279	2.51e-06	0.0294	CCGCCTGCAGGAGGCGGGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	50	68	-	15.3279	2.51e-06	0.0294	CCGCCTGCAGGAGGCGGGG
CTCF	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	75	93	+	15.3279	2.51e-06	0.0294	CCGCCTGCAGGAGGCGGGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	86	104	-	15.3279	2.51e-06	0.0294	CCGCCTGCAGGAGGCGGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	22	35	-	15.8462	2.51e-06	0.00341	GTCCCGCCCACGGC
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	10	24	+	15.6885	2.51e-06	0.167	GTGACTCAGCTCCTT
USF1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	31	41	-	15.8367	2.51e-06	0.0458	CGCACGTGACC
USF1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	78	+	15.8367	2.51e-06	0.0458	CGCACGTGACC
Mecom	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	5	18	+	16.0787	2.51e-06	0.403	GAGATAAGATAGGG
Mecom	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	39	52	+	16.0787	2.51e-06	0.403	GAGATAAGATAGGG
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr1:158146798..158146912,-__2027.1.0.0	89	101	+	15.8525	2.51e-06	0.673	CTGCAACAGGTAG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	27	41	-	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	27	41	-	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	79	93	-	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	22	36	+	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	22	36	+	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	74	88	+	15.9091	2.52e-06	0.024	ATCTCGCGACAGCTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	32	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	32	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	32	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	32	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	32	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	7	21	-	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	7	21	-	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	7	21	-	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	7	21	-	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	22	36	+	15.8276	2.52e-06	0.00171	CGCCCGCCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	22	36	+	15.8276	2.52e-06	0.00171	CGCCCGCCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	42	+	15.8276	2.52e-06	0.00171	CCCCCGCCCTCTGCT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	42	+	15.8276	2.52e-06	0.00171	CCCCCGCCCTCTGCT
SP2	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	51	+	15.8276	2.52e-06	0.00171	GCCCCGCCCTCGGAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	51	65	+	15.8276	2.52e-06	0.00171	CTCCCGCCCCGCCCG
SP2	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	73	87	-	15.8276	2.52e-06	0.00171	CCCCCGCCCTCTGCT
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	79	93	-	15.8276	2.52e-06	0.00171	CGCCCGCCCTCCGCC
SP2	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	108	+	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	83	97	-	15.8276	2.52e-06	0.00171	GCCCCGCCCCAAGCG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	16	31	-	13.0172	2.52e-06	0.231	GTCCCACAATGCTTTT
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	16	31	-	13.0172	2.52e-06	0.231	GTCCCACAATGCTTTT
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	31	42	-	16.1122	2.52e-06	0.086	TGGCAGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	69	80	-	16.1122	2.52e-06	0.086	TGGCAGGGGGTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	39	54	-	15.5818	2.52e-06	0.0258	TTCCGCCCCCGCGTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	39	54	-	15.5818	2.52e-06	0.0258	TTCCGCCCCCGCGTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	39	54	-	15.5818	2.52e-06	0.0258	TTCCGCCCCCGCGTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	39	54	-	15.5818	2.52e-06	0.0258	TTCCGCCCCCGCGTCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	73	88	+	15.5818	2.52e-06	0.0258	GCCCGCCCTCCCATTT
ELF3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	91	103	+	15.8448	2.52e-06	0.0804	AAGGCGGAAGTAG
HOXC12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	39	-	15.6364	2.52e-06	0.797	GATCGTAAAAA
HOXC12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	39	-	15.6364	2.52e-06	0.797	GATCGTAAAAA
HOXC12	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	76	86	+	15.6364	2.52e-06	0.797	GATCGTAAAAA
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	74	87	-	15.7742	2.52e-06	0.341	AAGAAACTGAAAGT
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	74	87	-	15.7742	2.52e-06	0.341	AAGAAACTGAAAGT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	21	31	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	21	31	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	21	31	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	21	31	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	28	38	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	28	38	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	28	38	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	28	38	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	58	68	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	75	85	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	101	111	+	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	4	14	-	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	4	14	-	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	30	40	-	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	77	87	-	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	84	94	-	15.9836	2.52e-06	0.0162	GCGGAAGTGGC
HINFP	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	61	72	-	15.8939	2.53e-06	0.0632	CCGGGTCCGCGG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	12	-	15.918	2.53e-06	0.0691	AAGCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	12	-	15.918	2.53e-06	0.0691	AAGCCGGAAGTT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	66	86	+	15.3469	2.53e-06	0.00271	TGAGAAGAGGTGGGAGGAAGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	38	54	-	15.7041	2.53e-06	0.338	AGGTCAGAGGAAGGGGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	75	91	-	14.0182	2.53e-06	0.00513	CTGGCCCCGCCTCTCTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	75	91	-	14.0182	2.53e-06	0.00513	CTGGCCCCGCCTCTCTT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	33	47	-	15.0517	2.53e-06	0.02	CCCCGCCCCCCCACC
EGR3	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	70	84	-	15.0517	2.53e-06	0.02	CCCCGCCCCCCCACC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	31	45	+	15.0517	2.53e-06	0.02	CCCCGCCCCCCCACC
EGR3	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	68	82	+	15.0517	2.53e-06	0.02	CCCCGCCCCCCCACC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	-	16	2.54e-06	0.0372	GGCCCCGAGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	+	16	2.54e-06	0.0372	GGCCCCGAGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	+	16	2.54e-06	0.0372	GGCCCCGAGGGGA
KLF14	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	4	17	+	15.9138	2.54e-06	0.0107	CGCCCCGCCCACCT
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	20	35	-	15.7121	2.54e-06	0.0426	GGTCGCCATGGGAACG
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	20	35	-	15.7121	2.54e-06	0.0426	GGTCGCCATGGGAACG
RFX4	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	95	+	15.7121	2.54e-06	0.0426	GGTCGCCATGGGAACG
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	70	90	+	15.6935	2.54e-06	0.0724	TGAAACTTTCAGTTTCTTTGC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	70	90	+	15.6935	2.54e-06	0.0724	TGAAACTTTCAGTTTCTTTGC
EGR1	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	93	106	-	15.8269	2.54e-06	0.00344	CGCCCTCCCCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	9	22	+	15.8269	2.54e-06	0.00344	CGCCCTCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	27	43	+	14	2.55e-06	0.00514	TAGGCCCCGCCCCGCCA
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	35	51	-	14	2.55e-06	0.00514	TAGGCCCCGCCCCGCCA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	79	-	16.051	2.55e-06	0.149	AGGCACGTGGT
Rarg(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	30	46	-	8.2	2.55e-06	0.384	GAGGTCGCATCAGGTCA
Rarg(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	69	85	+	8.2	2.55e-06	0.384	GAGGTCGCATCAGGTCA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	69	85	+	8.2	2.55e-06	0.384	GAGGTCGCATCAGGTCA
Rarg(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	69	85	+	8.2	2.55e-06	0.384	GAGGTCGCATCAGGTCA
Rarg(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	69	85	+	8.2	2.55e-06	0.384	GAGGTCGCATCAGGTCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	8	22	-	15.8103	2.56e-06	0.00173	GGCCCACCCCCTCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	8	22	-	15.8103	2.56e-06	0.00173	GGCCCACCCCCTCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	8	22	-	15.8103	2.56e-06	0.00173	GGCCCACCCCCTCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	8	22	-	15.8103	2.56e-06	0.00173	GGCCCACCCCCTCTC
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	11	25	-	15.8103	2.56e-06	0.00173	CTCCCTCCTCCTCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	18	32	-	15.8103	2.56e-06	0.00173	GCCCCTCCCTCCCGG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	45	56	-	15.9615	2.56e-06	0.0256	CAAAATGGCCCC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	45	56	-	15.9615	2.56e-06	0.0256	CAAAATGGCCCC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	45	56	-	15.9615	2.56e-06	0.0256	CAAAATGGCCCC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	45	56	-	15.9615	2.56e-06	0.0256	CAAAATGGCCCC
YY1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	92	103	-	15.9615	2.56e-06	0.0256	CAAAATGGCCCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	-	15.9836	2.56e-06	0.0372	CCCCCCCGGGGCA
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	9	29	+	15.3265	2.56e-06	0.00274	GGGGGAAAAGGGGAGGTGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	15	35	+	15.3265	2.56e-06	0.00274	AAGGGACTAAGGGGAGGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	86	106	-	15.3265	2.56e-06	0.00274	GGGGGAAAAGGGGAGGTGGGA
Myc	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	60	69	-	15.4182	2.56e-06	0.189	CCACGTGCTT
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	60	69	-	15.4182	2.56e-06	0.189	CCACGTGCTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.2414	2.56e-06	0.0647	ACCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.2414	2.56e-06	0.0647	ACCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.4909	2.56e-06	0.0567	ACCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.4909	2.56e-06	0.0567	ACCGGAAGTT
ERF	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	15.6714	2.56e-06	0.042	ACCGGAAATG
ERF	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	15.6714	2.56e-06	0.042	ACCGGAAATG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	15.569	2.56e-06	0.0454	ACCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	15.569	2.56e-06	0.0454	ACCGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.8936	2.56e-06	0.0603	ACCGGAAGTA
Myc	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	16	25	+	15.4182	2.56e-06	0.189	CCATGTGGTT
ETS1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	15.5	2.56e-06	0.0577	ACCGGAAATG
ETS1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	15.5	2.56e-06	0.0577	ACCGGAAATG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	16.4681	2.56e-06	0.0372	ACCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	16.4681	2.56e-06	0.0372	ACCGGAAGTT
ERF	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	15.6714	2.56e-06	0.042	ACCGGAAATG
ERF	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	15.6714	2.56e-06	0.042	ACCGGAAATG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.8936	2.56e-06	0.0603	ACCGGAAGTA
ETS1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	15.5	2.56e-06	0.0577	ACCGGAAATG
ETS1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	15.5	2.56e-06	0.0577	ACCGGAAATG
JUN	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	54	66	-	16.102	2.57e-06	0.297	TGGATGATGCCAT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	29	42	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	29	42	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	29	42	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	90	103	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	90	103	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	90	103	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	90	103	-	15.8077	2.57e-06	0.00344	GCTCCGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	35	48	+	15.8077	2.57e-06	0.00344	GCCCCGCCCACAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	35	48	+	15.8077	2.57e-06	0.00344	GCCCCGCCCACAGC
YY2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	67	77	+	15.2424	2.57e-06	0.223	GGCCGCCATTT
SP1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	37	+	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	18	28	-	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	18	28	-	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	18	28	-	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	22	32	-	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	37	47	-	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	65	+	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	92	+	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
SP1	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	98	+	15.8269	2.57e-06	0.0021	CCTCCGCCCCC
EGR2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	40	50	+	15.7241	2.57e-06	0.0586	CCGCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	54	64	+	15.7241	2.57e-06	0.0586	CCGCCCCCGCA
EGR2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	65	75	-	15.7241	2.57e-06	0.0586	CCGCCCCCGCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	69	79	-	14.9837	2.58e-06	0.00578	GACACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	69	79	-	14.9837	2.58e-06	0.00578	GACACGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	69	79	-	14.9837	2.58e-06	0.00578	GACACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	69	79	-	14.9837	2.58e-06	0.00578	GACACGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	91	106	+	15.5455	2.58e-06	0.0258	TCCCGCCCTCGCATGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	91	106	+	15.5455	2.58e-06	0.0258	TCCCGCCCTCGCATGC
NFYB	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	30	44	-	15.9808	2.58e-06	0.0551	CGAGCAGCCAATCAG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	2	12	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	2	12	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	2	12	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	2	12	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	11	21	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	11	21	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	13	23	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	13	23	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	13	23	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	13	23	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	19	29	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	19	29	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	22	32	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	22	32	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	22	32	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	16	26	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	16	26	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	26	36	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	31	41	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	31	41	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	33	43	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	33	43	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	33	43	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	33	43	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	48	58	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	48	58	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	49	59	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	52	62	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	52	62	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	53	63	+	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	52	62	-	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	53	63	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	56	66	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	57	67	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	62	72	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	74	84	+	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	77	87	-	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	83	93	-	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	83	93	-	15.9455	2.58e-06	0.00339	GCGGCTGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	96	106	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	103	113	-	15.9455	2.58e-06	0.00339	GCGCAGGCGCG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	7	21	-	15.9545	2.59e-06	0.0796	TAAGTTTCAGTTCTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	7	21	-	15.9545	2.59e-06	0.0796	TAAGTTTCAGTTCTT
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	15	34	-	13.1651	2.59e-06	0.023	ACCCCCACCCCCACCCCCAC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	21	40	-	13.1651	2.59e-06	0.023	ACCCCCACCCCCACCCCCAC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	27	46	-	13.1651	2.59e-06	0.023	ACCCCCACCCCCACCCCCAC
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	27	42	-	13.7541	2.59e-06	0.291	GGGGTCAGCCAGTTCG
Vdr	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	27	42	-	13.7541	2.59e-06	0.291	GGGGTCAGCCAGTTCG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	42	-	16.2545	2.59e-06	0.148	TTTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	68	-	16.2545	2.59e-06	0.148	TTTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	73	83	+	16.2545	2.59e-06	0.148	TTTCCAGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	73	83	+	16.2545	2.59e-06	0.148	TTTCCAGGAAG
Crx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	93	103	+	15.569	2.59e-06	1	AAGAGGATTAA
Crx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	93	103	+	15.569	2.59e-06	1	AAGAGGATTAA
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	30	45	-	15.6818	2.59e-06	0.0426	CGTCGCCATGGGAACC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	30	45	-	15.6818	2.59e-06	0.0426	CGTCGCCATGGGAACC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	34	51	+	0.631579	2.59e-06	0.0136	GGATGGGAGGAGGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	34	51	+	0.631579	2.59e-06	0.0136	GGATGGGAGGAGGGAAGT
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	4	16	-	13.6825	2.59e-06	0.377	TGGGGGCACGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	4	16	-	13.6825	2.59e-06	0.377	TGGGGGCACGTGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	12	26	+	15.7931	2.59e-06	0.00174	TGTCCGCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	15	29	+	15.7931	2.59e-06	0.00174	GCCCCGCTCCCCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	15	29	+	15.7931	2.59e-06	0.00174	GCCCCGCTCCCCGCC
SP2	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	35	+	15.7931	2.59e-06	0.00174	GCCCCTCCCCTGCCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	50	64	+	15.7931	2.59e-06	0.00174	GCTCCGCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	45	59	-	15.7931	2.59e-06	0.00174	GCCCCGCCCACCCTA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	45	59	-	15.7931	2.59e-06	0.00174	GCCCCGCCCACCCTA
SP2	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	51	65	-	15.7931	2.59e-06	0.00174	GCTCCGCCCCGCGCC
KLF13	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	67	84	+	14.1897	2.59e-06	0.0601	GGGCCACGCCCCCAGTCC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	37	50	+	15.8333	2.59e-06	0.01	GCGGCTTGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	37	50	+	15.8333	2.59e-06	0.01	GCGGCTTGGGCCTC
RFX2	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	-	14.5143	2.6e-06	0.0419	GGTTTCCATGACAATG
RFX2	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	+	14.5143	2.6e-06	0.0419	GGTTTCCATGACAATG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	+	14.4138	2.6e-06	0.0375	CGTTGCTATGGCGCCC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	+	14.4138	2.6e-06	0.0375	CGTTGCTATGGCGCCC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	+	14.4138	2.6e-06	0.0375	CGTTGCTATGGCGCCC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	+	14.4138	2.6e-06	0.0375	CGTTGCTATGGCGCCC
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	+	14.4138	2.6e-06	0.0375	CGTTGCTATGGCGCCC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	29	+	15.7755	2.6e-06	0.0556	CCTGACGTCACC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	97	-	15.7755	2.6e-06	0.0556	CCTGACGTCACC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	48	64	+	13.9455	2.6e-06	0.00522	AGAGCCCCGCCCCCGCA
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	79	95	+	13.9455	2.6e-06	0.00522	CAGGCCCCTCCCCCGTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	6	19	+	15.7885	2.61e-06	0.00348	GCGCCGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	6	19	+	15.7885	2.61e-06	0.00348	GCGCCGCCTCCGCG
TFAP2B	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	-	15.1091	2.61e-06	0.0893	TGCCCTAGGGCT
TFAP2B	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	+	15.1091	2.61e-06	0.0893	TGCCCTAGGGCT
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	42	+	14.8276	2.62e-06	0.128	CGGCACGTGGCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	42	+	14.8276	2.62e-06	0.128	CGGCACGTGGCG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	42	+	14.8276	2.62e-06	0.128	CGGCACGTGGCG
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	24	34	-	15.1364	2.62e-06	0.497	GAGTAAACAAA
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	24	34	-	15.1364	2.62e-06	0.497	GAGTAAACAAA
FOXP2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	86	96	-	15.1364	2.62e-06	0.497	GAGTAAACAAA
FOXP2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	19	29	+	15.1364	2.62e-06	0.497	GAGTAAACAAA
FOXP2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	81	91	+	15.1364	2.62e-06	0.497	GAGTAAACAAA
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	12	22	-	15.5319	2.62e-06	0.104	TCTGACTCATG
FOS	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	83	93	-	15.5319	2.62e-06	0.104	TCTGACTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	50	60	+	15.5319	2.62e-06	0.104	TCTGACTCATG
SP2	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	20	34	-	15.7759	2.63e-06	0.00176	GCCCCTCCCACCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	95	+	15.7759	2.63e-06	0.00176	GCCCCTCCCACCTCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	43	63	+	15.2857	2.63e-06	0.00277	GAGTGAGGAGGAGGGGAAGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	47	67	+	15.2857	2.63e-06	0.00277	GGAGGAGGCGGGAGGAGGCGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	59	79	+	15.2857	2.63e-06	0.00277	GAAGGAGAGAGGAAGAGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	67	-	15.2857	2.63e-06	0.00277	GGGGGGGGGGGGCGGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	53	73	-	15.2857	2.63e-06	0.00277	GAAGGAGAAAGGAGCGAGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	53	73	-	15.2857	2.63e-06	0.00277	GAAGGAGAAAGGAGCGAGAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	53	73	-	15.2857	2.63e-06	0.00277	GAAGGAGAAAGGAGCGAGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	53	73	-	15.2857	2.63e-06	0.00277	GAAGGAGAAAGGAGCGAGAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	53	73	-	15.2857	2.63e-06	0.00277	GAAGGAGAAAGGAGCGAGAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	57	77	-	15.2857	2.63e-06	0.00277	AGAGGAAGGAAAGGCAGGAGG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	38	52	+	15.2714	2.63e-06	0.0659	CGCCCCCCGCAGGGA
PKNOX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	-	13.6393	2.63e-06	0.353	TGCCAGCTGTCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	-	13.6393	2.63e-06	0.353	TGCCAGCTGTCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	25	42	-	0.592105	2.64e-06	0.0137	GGAAGGATTGCTGGAAGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	59	76	-	0.592105	2.64e-06	0.0137	GGAAGGATTGCTGGAAGG
TGIF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	+	11.8462	2.64e-06	0.231	TGACAGCTGGCA
TGIF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	+	11.8462	2.64e-06	0.231	TGACAGCTGGCA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	47	+	13.1193	2.64e-06	0.023	CCCCCCCCCCCCCCCCGCAC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	76	-	15.4694	2.64e-06	0.0421	GGCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	76	-	15.4694	2.64e-06	0.0421	GGCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	96	-	15.4694	2.64e-06	0.0421	GGCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	96	-	15.4694	2.64e-06	0.0421	GGCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	78	+	15.4694	2.64e-06	0.0421	GGCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	78	+	15.4694	2.64e-06	0.0421	GGCACGTGACC
Myod1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	38	50	-	15.3265	2.64e-06	0.0598	CGCAGCTGCCCTT
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	16	29	+	15.803	2.64e-06	0.01	GCCCCCGCGGCCTC
SOX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	43	+	12.1633	2.65e-06	1	TGCAATGATATTGTT
SOX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	43	+	12.1633	2.65e-06	1	TGCAATGATATTGTT
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	73	87	+	15.1171	2.65e-06	0.124	GCGGGTCAGAGTTCA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	73	87	+	15.1171	2.65e-06	0.124	GCGGGTCAGAGTTCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	15	34	+	13.1101	2.65e-06	0.023	CCCGCCCCCAACCCCCCTGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	15	34	+	13.1101	2.65e-06	0.023	CCCGCCCCCAACCCCCCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	15	34	+	13.1101	2.65e-06	0.023	CCCGCCCCCAACCCCCCTGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	15	34	+	13.1101	2.65e-06	0.023	CCCGCCCCCAACCCCCCTGC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	+	15.8727	2.65e-06	0.0625	AGTGACTCAGC
FOSL1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	-	15.8727	2.65e-06	0.0625	AGTGACTCAGC
FOSL1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	-	15.8727	2.65e-06	0.0625	AGTGACTCAGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	+	15.8727	2.65e-06	0.0625	AGTGACTCAGC
FOSL1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	+	15.8727	2.65e-06	0.0625	AGTGACTCAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	5	19	+	15.5738	2.65e-06	0.0254	TGCCACGCCCCCCCC
Klf12	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	35	49	+	15.5738	2.65e-06	0.0254	TGCCACGCCCCCCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	41	55	+	15.5738	2.65e-06	0.0254	TGCCACGCCCCCCCC
Klf12	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	60	74	-	15.5738	2.65e-06	0.0254	TGCCACGCCCCCCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	66	80	-	15.5738	2.65e-06	0.0254	TGCCACGCCCCCCCC
T	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	55	70	+	15.1538	2.65e-06	0.786	TCACGCATGCGTGCGA
T	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	45	60	-	15.1538	2.65e-06	0.786	TCACGCATGCGTGCGA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	101	114	-	15.7692	2.66e-06	0.00352	GCCCCACCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	101	114	-	15.7692	2.66e-06	0.00352	GCCCCACCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	71	+	15.7692	2.66e-06	0.00352	GCCCCGCCCCCTGT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	71	+	15.7692	2.66e-06	0.00352	GCCCCGCCCCCTGT
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	3	13	-	15.7759	2.66e-06	0.022	GGGCGGGAACC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	3	13	-	15.7759	2.66e-06	0.022	GGGCGGGAACC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	3	13	-	15.7759	2.66e-06	0.022	GGGCGGGAACC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	15	25	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	15	25	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	32	42	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	32	42	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	49	59	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	49	59	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	49	59	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	49	59	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	49	59	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	58	68	-	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	20	30	+	15.7759	2.66e-06	0.022	GGGCGGGAGCG
E2F6	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	47	57	+	15.7759	2.66e-06	0.022	GGGCGGGAACC
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	90	100	+	15.7759	2.66e-06	0.022	GGGCGGGAGCG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	62	72	+	15.3265	2.66e-06	0.219	GCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	62	72	+	15.3265	2.66e-06	0.219	GCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	62	72	+	15.3265	2.66e-06	0.219	GCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	62	72	+	15.3265	2.66e-06	0.219	GCTTCCCAGAA
ELK4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	25	35	+	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	32	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	32	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	32	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	32	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	44	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	44	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	44	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	44	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	48	58	+	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	53	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	53	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	53	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	53	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	62	72	+	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	71	81	+	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	90	-	15.5455	2.66e-06	0.0196	TCACTTCCGGG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	73	84	+	15.9016	2.66e-06	0.041	GATCCGGAAGTG
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	10	22	+	16.0862	2.67e-06	0.234	GTCATTTGCATAC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	37	+	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	37	+	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	37	+	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	37	+	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	24	38	-	15.7586	2.67e-06	0.00177	GCCCCGCCTCACGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	25	39	-	15.7586	2.67e-06	0.00177	CCCCCTCCCCTTCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	25	39	-	15.7586	2.67e-06	0.00177	CCCCCTCCCCTTCCG
SP2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	26	40	-	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	89	+	15.7586	2.67e-06	0.00177	ACCCCACCCCCCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	62	76	-	15.7586	2.67e-06	0.00177	CCCCCGCCCCCCGTA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	2	22	-	15.2653	2.67e-06	0.0028	TGGTGAGGAGGGAGGGAAGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	63	83	-	15.2653	2.67e-06	0.0028	AGAGAAGAGGAGGGGGAGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	66	86	-	15.2653	2.67e-06	0.0028	AGAAGAGAAGGGAGGAGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	+	15.931	2.67e-06	0.0343	GGCCCCGAGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	+	15.931	2.67e-06	0.0343	GGCCCCGAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	+	15.931	2.67e-06	0.0343	GGCCCCGAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	+	15.931	2.67e-06	0.0343	GGCCCCGAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	+	15.931	2.67e-06	0.0343	GGCCCCGAGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	-	15.9898	2.67e-06	0.086	GGCCTGGGGGCA
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	-	15.9898	2.67e-06	0.086	GGCCTGGGGGCA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	-	15.9898	2.67e-06	0.086	GGCCTGGGGGCA
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	5	25	-	15.3776	2.67e-06	0.381	AAGGTGCTGAGTCAGCCCTGG
MAFG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	5	25	-	15.3776	2.67e-06	0.381	AAGGTGCTGAGTCAGCCCTGG
IRF1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	19	39	-	15.6129	2.67e-06	0.0724	CGCTACTTCCGGTTTCCTTTC
IRF1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	76	96	+	15.6129	2.67e-06	0.0724	CGCTACTTCCGGTTTCCTTTC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	-	16.0328	2.67e-06	0.0537	CGCCCTTAGGGCG
NFYA	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	56	73	+	15.6829	2.67e-06	0.0288	GAGGCGCCGATTGGCCGA
RUNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	66	76	+	14.3966	2.67e-06	0.16	TGCTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	66	76	+	14.3966	2.67e-06	0.16	TGCTGTGGTTT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	29	45	-	13.8727	2.68e-06	0.00535	AAGGCCCCGCCCCAGTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	79	92	-	15.7879	2.68e-06	0.01	CCAGGCCAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	79	92	-	15.7879	2.68e-06	0.01	CCAGGCCAGGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	26	40	-	14.9483	2.68e-06	0.02	CACCGCCCGCGCACG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	26	40	-	14.9483	2.68e-06	0.02	CACCGCCCGCGCACG
EGR3	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	75	89	+	14.9483	2.68e-06	0.02	CACCGCCCGCGCACG
Hes2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	8	20	-	13.6508	2.68e-06	0.377	CCCCGGCACGTGC
Hes2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	31	43	-	13.6508	2.68e-06	0.377	CCCCGGCACGTGC
Hes2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	72	84	+	13.6508	2.68e-06	0.377	CCCCGGCACGTGC
Hes2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	95	107	+	13.6508	2.68e-06	0.377	CCCCGGCACGTGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	12	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	12	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	23	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	14	25	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	20	31	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	43	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	43	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	43	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	43	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	43	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	26	37	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	61	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	61	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	61	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	61	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	73	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	77	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	65	76	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	65	76	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	89	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	95	+	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	103	114	-	15.4211	2.68e-06	0.0104	CCCCCGCCCCCC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	52	67	+	5.5	2.69e-06	0.29	CGACCCGCCGCGGCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	52	67	+	5.5	2.69e-06	0.29	CGACCCGCCGCGGCGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	52	67	+	5.5	2.69e-06	0.29	CGACCCGCCGCGGCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	52	67	+	5.5	2.69e-06	0.29	CGACCCGCCGCGGCGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	15	32	-	0.539474	2.69e-06	0.0138	GGGGGGAAGGAAACAAAG
HOXC10	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	59	-	14.2364	2.69e-06	0.861	GTCGTAAAAA
HOXC10	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	59	-	14.2364	2.69e-06	0.861	GTCGTAAAAA
HLTF	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	51	60	-	9.2439	2.69e-06	1	AACCTTATCT
HOXC10	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	56	65	+	14.2364	2.69e-06	0.861	GTCGTAAAAA
POU6F2	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	1	10	-	15.0727	2.69e-06	1	AGCTCATTAT
ZIC3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	49	63	-	15.2286	2.7e-06	0.0659	CGCCCCCCGGGGTGC
ZIC3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	66	+	15.2286	2.7e-06	0.0659	CGCCCCCCGGGGTGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	29	43	-	14.931	2.7e-06	0.02	CACCGCCCCCTCACT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	27	41	+	15.6667	2.7e-06	0.143	CATGGTGACTCAGCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	64	74	-	15.8333	2.7e-06	0.0344	AGCCACGCCCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	6	26	-	15.2449	2.7e-06	0.00283	AGGGGAGAGGGGAGGGAGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	6	26	-	15.2449	2.7e-06	0.00283	AGGGGAGAGGGGAGGGAGGGC
KLF16	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	11	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	14	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	27	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	27	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	27	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	27	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	40	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	40	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	41	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	43	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	43	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	43	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	51	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	51	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	59	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	61	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	61	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	67	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	71	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	72	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	72	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	72	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	72	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	78	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	86	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	87	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	89	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	98	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	99	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	101	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	104	+	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	8	18	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	10	20	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	11	21	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	11	21	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	14	24	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	14	24	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	14	24	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	16	26	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	17	27	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	18	28	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	24	34	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	28	38	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	28	38	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	29	39	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	30	40	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	30	40	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	37	47	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	48	58	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	50	60	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	50	60	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	50	60	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	50	60	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	52	62	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	54	64	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	55	65	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	55	65	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	55	65	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	55	65	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	64	74	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	64	74	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	65	75	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	71	81	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	71	81	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	72	82	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	74	84	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	74	84	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	75	85	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	78	88	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	78	88	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	101	111	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	101	111	-	15.8276	2.7e-06	0.00437	GCCCCGCCCCT
RFX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	-	15.4394	2.7e-06	0.0409	CATTGCTATGACAACA
SP2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	28	42	+	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	18	32	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	18	32	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	18	32	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	24	38	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	38	52	-	15.7414	2.71e-06	0.00178	CCCCCTCCTCCCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	43	57	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	43	57	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	43	57	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	43	57	-	15.7414	2.71e-06	0.00178	CGCCCGCCCCGCCCC
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	42	55	+	15.5	2.71e-06	0.0735	CTTCCGGGAACTCG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	42	55	+	15.5	2.71e-06	0.0735	CTTCCGGGAACTCG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	42	55	+	15.5	2.71e-06	0.0735	CTTCCGGGAACTCG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	42	55	+	15.5	2.71e-06	0.0735	CTTCCGGGAACTCG
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	19	29	+	15.7308	2.71e-06	0.172	GGTATGAGTCA
ESRRB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	82	92	-	16.5172	2.71e-06	0.867	TCAAGGTCACT
Zfx	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	29	42	+	15.7727	2.71e-06	0.01	TCCGCCTGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	32	45	+	15.7727	2.71e-06	0.01	TGGGGCGGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	32	45	+	15.7727	2.71e-06	0.01	TGGGGCGGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	44	57	-	15.7727	2.71e-06	0.01	CGAGGCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	58	71	+	15.7727	2.71e-06	0.01	CGAGGCCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	58	71	+	15.7727	2.71e-06	0.01	CGAGGCCCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	58	71	+	15.7727	2.71e-06	0.01	CGAGGCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	73	86	-	15.7727	2.71e-06	0.01	TCCGCCTGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	73	86	-	15.7727	2.71e-06	0.01	TCCGCCTGGGCCTC
EGR2	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	18	28	+	15.6552	2.71e-06	0.0586	CCGCCCACGTA
EGR2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	20	30	+	15.6552	2.71e-06	0.0586	CCGCCCACGTA
EGR2	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	31	41	-	15.6552	2.71e-06	0.0586	CCGCCCACGTA
EGR2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	85	95	-	15.6552	2.71e-06	0.0586	CCGCCCACGTA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	87	97	-	15.6552	2.71e-06	0.0586	CCGCCCACGTA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	87	97	-	15.6552	2.71e-06	0.0586	CCGCCCACGTA
SPI1	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	24	37	+	13.4	2.71e-06	0.0625	AGAAAGCGGAAGAA
SPI1	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	78	91	-	13.4	2.71e-06	0.0625	AGAAAGCGGAAGAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	9	25	+	13.8364	2.71e-06	0.00535	CTCGCCACGCCCTCCTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	9	25	+	13.8364	2.71e-06	0.00535	CTCGCCACGCCCTCCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	24	40	+	13.8364	2.71e-06	0.00535	CTCGCCACGCCCTCCTG
SP4	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	27	43	+	13.8364	2.71e-06	0.00535	CTAGCCCCTCCCCCAGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	39	55	-	13.8364	2.71e-06	0.00535	CTAGCCCCTCCCCCAGC
ZEB1	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	14	22	+	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	56	64	+	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	56	64	+	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	56	64	+	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	63	71	+	15.6182	2.72e-06	0.244	CCTCACCTG
NFIX	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	81	89	+	11.3404	2.72e-06	0.758	CGTGCCAAG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	31	40	+	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	75	+	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	75	+	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	69	78	-	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	69	78	-	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	69	78	-	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	95	+	12.8776	2.72e-06	0.0396	GGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	95	+	12.8776	2.72e-06	0.0396	GGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	42	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	42	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	62	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	62	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	56	65	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	50	59	-	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	81	+	14.9836	2.72e-06	0.102	AGTCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	81	+	14.9836	2.72e-06	0.102	AGTCACGTGC
ETV6	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	11	20	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	28	37	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	59	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	56	65	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	56	65	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	83	92	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	83	92	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	83	92	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	83	92	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	104	113	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	104	113	+	15.5192	2.72e-06	0.0363	ACCGGAAGTG
ZEB1	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	51	59	-	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	93	101	-	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	95	103	-	15.6182	2.72e-06	0.244	CCTCACCTG
ZEB1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	101	109	-	15.6182	2.72e-06	0.244	CCTCACCTG
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	7	16	-	14.4343	2.72e-06	0.104	CGGGATTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	7	16	-	14.4343	2.72e-06	0.104	CGGGATTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	7	16	-	14.4343	2.72e-06	0.104	CGGGATTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	7	16	-	14.4343	2.72e-06	0.104	CGGGATTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	19	28	-	14.4343	2.72e-06	0.104	CGGGATTTCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	72	+	15.6327	2.72e-06	0.0486	ACCACGTGACT
ETV6	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	59	-	15.5192	2.72e-06	0.0363	ACCGGAAGTG
IRF2	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	48	65	+	14.0092	2.72e-06	0.254	GGAAAAAGAAACCGATTC
IRF2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	48	65	+	14.0092	2.72e-06	0.254	GGAAAAAGAAACCGATTC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	14	33	-	13.0459	2.72e-06	0.0234	AAACCAACCACAACATCACC
ELF3	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	48	60	-	15.6552	2.72e-06	0.0804	CTCCCGGAAGTGA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	57	68	+	15.8485	2.72e-06	0.0647	TCGCGTCCGCGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	90	103	-	15.7308	2.72e-06	0.00357	CCGCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	96	109	-	15.7308	2.72e-06	0.00357	CCGCCACCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	20	+	15.7308	2.72e-06	0.00357	GCCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	43	+	15.7308	2.72e-06	0.00357	GCCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	43	+	15.7308	2.72e-06	0.00357	GCCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	43	+	15.7308	2.72e-06	0.00357	GCCCCGCCCCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	43	+	15.7308	2.72e-06	0.00357	GCCCCGCCCCCAGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	75	92	-	0.5	2.72e-06	0.0139	GAAGGGGAGCAAGGGAGG
Myog	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	49	59	+	15.2449	2.73e-06	0.056	GGCAGCTGGGG
KLF13	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	26	43	-	14.069	2.73e-06	0.0601	GGGCCACGCCCCCGATGA
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	20	34	-	15.9231	2.73e-06	0.0551	CGCGCGGCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	20	34	-	15.9231	2.73e-06	0.0551	CGCGCGGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	20	34	-	15.9231	2.73e-06	0.0551	CGCGCGGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	20	34	-	15.9231	2.73e-06	0.0551	CGCGCGGCCAATCAG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	49	63	-	15.5818	2.73e-06	0.0875	CCCCACCCGCGGCGC
RFX3	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	+	15.4242	2.73e-06	0.0409	CATTGTCATGGAAACC
RFX3	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	-	15.4242	2.73e-06	0.0409	GGTTTCCATGACAATG
RFX3	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	+	15.4242	2.73e-06	0.0409	GGTTTCCATGACAATG
RFX3	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	-	15.4242	2.73e-06	0.0409	CATTGTCATGGAAACC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	12	25	-	15.7759	2.73e-06	0.0109	GACCACGCCCCTAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	12	25	-	15.7759	2.73e-06	0.0109	GACCACGCCCCTAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	12	25	-	15.7759	2.73e-06	0.0109	GACCACGCCCCTAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	12	25	-	15.7759	2.73e-06	0.0109	GACCACGCCCCTAG
KLF14	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	90	103	+	15.7759	2.73e-06	0.0109	GACCACGCCCCTAG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	+	14.898	2.73e-06	0.0857	TGCCCCGGGGGA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	-	14.898	2.73e-06	0.0857	TGCCCCGGGGGA
ZBTB33	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	15	29	-	15.7879	2.74e-06	0.0243	CGCTCGCGAGAGCCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	35	49	-	15.7879	2.74e-06	0.0243	ACCTCGCGAGAGCTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	35	49	-	15.7879	2.74e-06	0.0243	ACCTCGCGAGAGCTC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	86	100	+	15.7879	2.74e-06	0.0243	CGCTCGCGAGAGCCG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	7	27	+	15.2245	2.74e-06	0.00286	GGAGAAGCAGGCGCGGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	7	27	+	15.2245	2.74e-06	0.00286	GGAGAAGCAGGCGCGGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	21	41	+	15.2245	2.74e-06	0.00286	GGGAGAGGAAGGGGCGGGGCA
Myod1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	80	92	-	15.2857	2.74e-06	0.0602	TGCAGCTGCTTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	47	61	+	15.7241	2.74e-06	0.0018	CCCCCTCCTCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	47	61	+	15.7241	2.74e-06	0.0018	CCCCCTCCTCCTGCC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	38	51	+	15.3607	2.74e-06	0.176	CGCCCCCCGCAGGG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	20	37	-	14.0517	2.75e-06	0.0601	CGGCCACGCCCCTGCAGG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	20	37	-	14.0517	2.75e-06	0.0601	CGGCCACGCCCCTGCAGG
KLF13	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	24	41	-	14.0517	2.75e-06	0.0601	AGGCCACGCCCCGCTTGT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	67	81	+	15.4918	2.75e-06	0.0254	TGCCACGCCCTGTGC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	15	-	16	2.75e-06	0.0537	CGCCCCGGGGGCT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	39	+	16	2.75e-06	0.0537	CGCCCTGGGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	-	15.0182	2.75e-06	0.0893	TCCCCTCGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	-	15.0182	2.75e-06	0.0893	TCCCCTCGGGCA
EGR3	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	80	94	-	14.8966	2.75e-06	0.02	TCCTGCCCACGCACT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	21	35	+	14.8966	2.75e-06	0.02	TCCTGCCCACGCACT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	21	35	+	14.8966	2.75e-06	0.02	TCCTGCCCACGCACT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	21	35	+	14.8966	2.75e-06	0.02	TCCTGCCCACGCACT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	21	35	+	14.8966	2.75e-06	0.02	TCCTGCCCACGCACT
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	26	39	+	15.7115	2.75e-06	0.00359	CCACCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	61	74	+	15.7115	2.75e-06	0.00359	CCCCCGCCTCCGGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	61	74	+	15.7115	2.75e-06	0.00359	CCCCCGCCTCCGGA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	1	11	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	1	11	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	7	17	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr9:77643296..77643410,-__1124.1.0.0	52	62	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	61	71	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	63	73	+	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr9:77643296..77643410,+__2469.1.0.0	53	63	-	15.8182	2.75e-06	0.00339	ACGCATGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	98	108	-	15.8182	2.75e-06	0.00339	ACGCATGCGCA
RFX3	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	-	15.4091	2.76e-06	0.0409	GGTCTCCGTGGCAACG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	71	84	-	15.3521	2.76e-06	0.0649	GAAATGAGGAAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	71	84	-	15.3521	2.76e-06	0.0649	GAAATGAGGAAGCA
KLF14	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	32	45	-	15.7586	2.76e-06	0.0109	AGCCCCGCCCACCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	60	73	+	15.7586	2.76e-06	0.0109	GGCCCCGCCCCTCA
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	34	50	+	11.5606	2.76e-06	0.264	GGGGGCGCCCTGACCTC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	39	+	15.5918	2.76e-06	0.0564	CGTGACGTCATC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	87	-	15.5918	2.76e-06	0.0564	CGTGACGTCATC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	71	85	+	15.8485	2.76e-06	0.0796	CAAGTTTCTGTTCCC
TFEC	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	14.4146	2.76e-06	0.113	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	16.8276	2.76e-06	0.112	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	16.8545	2.76e-06	0.115	GTCACGTGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	14.4146	2.76e-06	0.113	GTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	14.4146	2.76e-06	0.113	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	16.8276	2.76e-06	0.112	GTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	16.8276	2.76e-06	0.112	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	16.8545	2.76e-06	0.115	GTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	16.8545	2.76e-06	0.115	GTCACGTGAC
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	33	45	+	16.0345	2.77e-06	0.234	TGAATTTGCATTT
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	6	20	+	15.5246	2.77e-06	0.167	ATGACTCTGCAAAAG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	6	20	+	15.5246	2.77e-06	0.167	ATGACTCTGCAAAAG
MEF2C	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	11	25	+	15.5254	2.77e-06	0.462	TTCCTAAAAATAGCC
MEF2C	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	90	104	-	15.5254	2.77e-06	0.462	TTCCTAAAAATAGCC
E2F6	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	1	11	-	15.6552	2.77e-06	0.022	AGGCGGGAGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	33	43	+	15.6552	2.77e-06	0.022	AGGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	104	114	+	15.6552	2.77e-06	0.022	AGGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	104	114	+	15.6552	2.77e-06	0.022	AGGCGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	104	114	+	15.6552	2.77e-06	0.022	AGGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	104	114	+	15.6552	2.77e-06	0.022	AGGCGGGAGGC
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	71	81	+	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	71	81	+	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	71	81	+	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	71	81	+	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	81	-	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	81	-	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	81	-	14.2182	2.77e-06	0.0729	ACCCGGAAGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	11	31	-	15.2041	2.78e-06	0.00288	GGAGGGAGGGAGGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	15	35	-	15.2041	2.78e-06	0.00288	GGAGGGAGGGAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	41	61	-	15.2041	2.78e-06	0.00288	AGAGGAGGAAAAAAAAAAAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	41	61	-	15.2041	2.78e-06	0.00288	AGAGGAGGAAAAAAAAAAAAG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	49	63	+	14.8793	2.78e-06	0.02	CCCCGCCCCCGCTGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	50	64	+	14.8793	2.78e-06	0.02	ACACGCCCGCGCACA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	50	64	+	14.8793	2.78e-06	0.02	ACACGCCCGCGCACA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	50	64	+	14.8793	2.78e-06	0.02	ACACGCCCGCGCACA
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	50	64	+	14.8793	2.78e-06	0.02	ACACGCCCGCGCACA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	23	36	+	15.7424	2.78e-06	0.0102	CGGAGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	23	36	+	15.7424	2.78e-06	0.0102	CGGAGCCAGGCCTG
HSF1	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	83	95	-	14.9672	2.78e-06	0.862	TTCCAGAAACTTC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	25	+	15.7069	2.78e-06	0.00182	GCTCCGCCCCTCGCA
SP2	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	30	+	15.7069	2.78e-06	0.00182	CTCCCGCCCCCTCTA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	49	63	-	15.7069	2.78e-06	0.00182	GCTCCGCCCCCAGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	49	63	-	15.7069	2.78e-06	0.00182	GCTCCGCCCCCAGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	3	13	-	15.7241	2.79e-06	0.0186	GGGCGGGAACC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	3	13	-	15.7241	2.79e-06	0.0186	GGGCGGGAACC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	3	13	-	15.7241	2.79e-06	0.0186	GGGCGGGAACC
E2F4	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	47	57	+	15.7241	2.79e-06	0.0186	GGGCGGGAACC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	-	15.1923	2.79e-06	0.0521	CGCCCCAGGCA
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	40	53	+	15.6034	2.79e-06	0.043	GTCGCCATGGTGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	40	53	+	15.6034	2.79e-06	0.043	GTCGCCATGGTGAC
Rfx1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	62	75	-	15.6034	2.79e-06	0.043	GTCGCCATGGTGAC
SP1	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	2	12	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	24	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	25	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	27	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	39	+	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	39	+	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	42	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	42	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	42	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	25	35	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	25	35	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	59	+	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	41	51	-	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	62	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	64	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	64	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	46	56	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	47	57	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	68	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	69	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	53	63	-	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	53	63	-	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	74	+	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	83	+	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	78	88	-	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	78	88	-	15.8077	2.8e-06	0.00222	GCCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	103	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	103	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	103	113	+	15.8077	2.8e-06	0.00222	GTCCCGCCCCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	9	22	-	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	9	22	-	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	39	52	-	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	88	101	-	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	14	27	+	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	63	76	+	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	63	76	+	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	93	106	+	15.6923	2.8e-06	0.00361	CCGCCGCCGCCGCG
Klf12	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	27	41	-	15.4426	2.81e-06	0.0254	GGCCCCGCCCACTAT
ELF4	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	43	-	15.8361	2.81e-06	0.0425	GCCCCGGAAGTA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	14	27	-	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	14	27	-	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	14	27	-	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	14	27	-	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	35	48	+	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	67	80	-	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
KLF14	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	88	101	+	15.7241	2.81e-06	0.0109	GACTACGCCCCCAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	4	24	+	15.1837	2.81e-06	0.0029	AGAAGAGGAGGGGAAAAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	4	24	+	15.1837	2.81e-06	0.0029	AGAAGAGGAGGGGAAAAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	4	24	-	15.1837	2.81e-06	0.0029	GGGAGAGGGGAGGGAGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	4	24	-	15.1837	2.81e-06	0.0029	GGGAGAGGGGAGGGAGGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	16	36	-	15.1837	2.81e-06	0.0029	GGAGGCGGTGGCTGAGGGGGA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	81	+	13.5	2.81e-06	0.129	TGCCACGTGCCT
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	81	+	13.5	2.81e-06	0.129	TGCCACGTGCCT
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	81	+	13.5	2.81e-06	0.129	TGCCACGTGCCT
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	81	+	13.5	2.81e-06	0.129	TGCCACGTGCCT
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	45	-	13.5	2.81e-06	0.129	TGCCACGTGCCT
SP2	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	24	38	+	15.6897	2.82e-06	0.00184	CTCCCGCCTCTTGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	28	42	-	15.6897	2.82e-06	0.00184	GGTCCGCCTCTTCCC
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	41	55	-	15.6897	2.82e-06	0.00184	CTCCCTCCCCCTTCC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	74	+	15.6897	2.82e-06	0.00184	CTCCCTCCCCCTTCC
SP2	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	73	87	+	15.6897	2.82e-06	0.00184	GGTCCGCCTCTTCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	77	91	-	15.6897	2.82e-06	0.00184	CTCCCGCCTCTTGCG
YY2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	96	106	-	15.0606	2.82e-06	0.223	TTCCGCCATTA
YY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	9	19	+	15.0606	2.82e-06	0.223	TTCCGCCATTA
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	9	19	+	15.0606	2.82e-06	0.223	TTCCGCCATTA
ELF1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	60	-	15.7818	2.82e-06	0.049	CTCCCGGAAGTG
HOXD12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	20	30	+	15.4918	2.82e-06	0.549	AATCGTAAAAC
EGR2	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	32	42	-	15.6379	2.83e-06	0.0586	CCGCCTACGCG
Nr5a2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	19	33	+	15.7931	2.83e-06	0.208	CAGTCCAAGGACAGG
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	60	74	+	15.7931	2.83e-06	0.208	CAGTCCAAGGACAGG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	60	74	+	15.7931	2.83e-06	0.208	CAGTCCAAGGACAGG
Nr5a2	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	41	55	-	15.7931	2.83e-06	0.208	CAGTCCAAGGACAGG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	82	96	-	15.7931	2.83e-06	0.208	AATGTCAAGGTCACT
Nr5a2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	82	96	-	15.7931	2.83e-06	0.208	CAGTCCAAGGACAGG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	-	15.8	2.83e-06	0.0519	CGCCCCAGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	+	15.8	2.83e-06	0.0519	CGCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	+	15.8	2.83e-06	0.0519	CGCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	+	15.8	2.83e-06	0.0519	CGCCCCAGGCG
SP3	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	63	73	-	14.8699	2.83e-06	0.00632	GCCACGCCCCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	28	41	+	15.4091	2.84e-06	0.198	GTGCCACGTGACCC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	28	41	+	15.4091	2.84e-06	0.198	GTGCCACGTGACCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	84	101	-	0.381579	2.84e-06	0.0144	GAGGGAAGGGAAGGAAGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	59	72	-	15.6731	2.84e-06	0.00364	TCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	59	72	-	15.6731	2.84e-06	0.00364	TCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	59	72	-	15.6731	2.84e-06	0.00364	TCGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	59	72	-	15.6731	2.84e-06	0.00364	TCGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	83	96	-	15.6731	2.84e-06	0.00364	TCGCCGCCGCCGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	25	39	+	15.5273	2.84e-06	0.0875	ACCCCCCTGCTGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	25	39	+	15.5273	2.84e-06	0.0875	ACCCCCCTGCTGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	25	39	+	15.5273	2.84e-06	0.0875	ACCCCCCTGCTGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	25	39	+	15.5273	2.84e-06	0.0875	ACCCCCCTGCTGGGC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	44	54	-	15.4898	2.84e-06	0.114	TTTCCGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	44	54	-	15.4898	2.84e-06	0.114	TTTCCGGGAAG
STAT3	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	61	71	+	15.4898	2.84e-06	0.114	TTTCCGGGAAG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	+	15.9508	2.84e-06	0.0537	CGCCCCGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	+	15.9508	2.84e-06	0.0537	CGCCCCGGGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	28	-	15.9508	2.84e-06	0.0537	CGCCCTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	-	15.9508	2.84e-06	0.0537	CGCCCCGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	-	15.9508	2.84e-06	0.0537	CGCCCCGGGGGCG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	+	15.4483	2.84e-06	0.0593	CACAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	-	15.4483	2.84e-06	0.0593	CACAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	-	15.4483	2.84e-06	0.0593	CACAGCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	-	15.4483	2.84e-06	0.0593	CACAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	-	15.4483	2.84e-06	0.0593	CACAGCTGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	2	22	+	15.1633	2.85e-06	0.00293	GGGTGAGGGGCAGCGGAAGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	15	35	+	15.1633	2.85e-06	0.00293	GGAGGTGGGGTCAGAGAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	80	100	-	15.1633	2.85e-06	0.00293	GGAGGTGGGGTCAGAGAGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	91	111	-	15.1633	2.85e-06	0.00293	GGGGATGGAGGATGAAGAGGA
SP2	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	12	26	-	15.6724	2.85e-06	0.00184	GCCCCGCTCCCCCGC
SP2	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	17	31	-	15.6724	2.85e-06	0.00184	ACCCCGCCCCGGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	21	35	-	15.6724	2.85e-06	0.00184	GCTCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	21	35	-	15.6724	2.85e-06	0.00184	GCTCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	21	35	-	15.6724	2.85e-06	0.00184	GCTCCGCCCCGCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	21	35	-	15.6724	2.85e-06	0.00184	GCTCCGCCCCGCCGC
SP2	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	21	35	-	15.6724	2.85e-06	0.00184	TCCCCGCCTTCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	25	39	-	15.6724	2.85e-06	0.00184	GCCCCGCCTTCCCTT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	28	42	-	15.6724	2.85e-06	0.00184	CCACCGCCCCCCCCC
SP2	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	42	56	-	15.6724	2.85e-06	0.00184	GCCCCGCCTTCCCTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	59	73	+	15.6724	2.85e-06	0.00184	GCCCCGCCTTCCCTT
SP2	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	80	94	+	15.6724	2.85e-06	0.00184	TCCCCGCCTTCTCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	98	+	15.6724	2.85e-06	0.00184	ACCCCGCCCCGGCCC
CREB3L1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	42	55	+	15.3939	2.85e-06	0.198	CAGCCACGTCATCC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	15	-	15.8936	2.85e-06	0.254	GCTAATGACGTCATA
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	15	-	15.8936	2.85e-06	0.254	GCTAATGACGTCATA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	88	-	15.8936	2.85e-06	0.254	GCTAATGACGTCATA
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	26	40	+	15.8936	2.85e-06	0.254	GTTGATGACGTCACC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	41	+	15.8936	2.85e-06	0.254	GCTAATGACGTCATA
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	114	+	15.8936	2.85e-06	0.254	GCTAATGACGTCATA
Zfx	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	35	48	+	15.7121	2.85e-06	0.0103	TGCGGCGCGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	67	80	-	15.7121	2.85e-06	0.0103	TGCGGCGCGGCCTC
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	4	14	-	15.1455	2.85e-06	0.666	AACCACTCAGG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	28	38	+	15.6545	2.85e-06	0.0675	GGATGAGTCAT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	27	44	+	15.5732	2.86e-06	0.0295	AGGCTTCTTATTGGTGAG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	27	44	+	15.5732	2.86e-06	0.0295	AGGCTTCTTATTGGTGAG
Lhx3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	4	16	-	15.9406	2.86e-06	0.665	ACATTAATTATTC
Lhx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	4	16	-	15.9406	2.86e-06	0.665	ACATTAATTATTC
Lhx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	4	16	-	15.9406	2.86e-06	0.665	ACATTAATTATTC
Lhx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	4	16	-	15.9406	2.86e-06	0.665	ACATTAATTATTC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	-	15.8793	2.86e-06	0.0343	CGCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	-	15.8793	2.86e-06	0.0343	CGCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	-	15.8793	2.86e-06	0.0343	CGCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	-	15.8793	2.86e-06	0.0343	CGCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	-	15.8793	2.86e-06	0.0343	CGCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	-	15.8793	2.86e-06	0.0343	CGCCCCCGGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	+	15.8793	2.86e-06	0.0343	CGCCCCCGGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	-	15.8793	2.86e-06	0.0343	AGCCCGCGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	-	15.8793	2.86e-06	0.0343	AGCCCGCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	-	15.8793	2.86e-06	0.0343	AGCCCGCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	-	15.8793	2.86e-06	0.0343	AGCCCGCGGGGCG
IRF2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	12	29	-	13.8624	2.86e-06	0.254	GTAAAGTGAAAGCGAAAG
IRF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	24	41	-	13.8624	2.86e-06	0.254	GTAAAGTGAAAGCGAAAG
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	24	41	-	13.8624	2.86e-06	0.254	GTAAAGTGAAAGCGAAAG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	+	15	2.87e-06	0.054	TGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	+	15	2.87e-06	0.054	TGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	+	15	2.87e-06	0.054	TGCCCCCAGGCC
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	26	38	-	15.6061	2.87e-06	0.274	GTGAATGATTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	26	38	-	15.6061	2.87e-06	0.274	GTGAATGATTAAC
Klf12	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	62	76	-	15.3934	2.87e-06	0.0254	GGCCCCGCCCCTTTT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	75	89	-	15.3934	2.87e-06	0.0254	GGCCCCGCCCCTCTT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	75	89	-	15.3934	2.87e-06	0.0254	GGCCCCGCCCCTCTT
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	70	83	+	15.3099	2.88e-06	0.0649	AGAATCAGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	70	83	+	15.3099	2.88e-06	0.0649	AGAATCAGGAAGTC
SPIC	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	78	-	15.3099	2.88e-06	0.0649	AGGAAGCGGAAGTA
XBP1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	41	54	+	15.7885	2.88e-06	0.446	GCAGCCACGTCATC
ELF1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	46	-	15.7455	2.88e-06	0.049	GAACCGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	69	80	+	15.7455	2.88e-06	0.049	GAACCGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	69	80	+	15.7455	2.88e-06	0.049	GAACCGGAAGTA
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	100	109	-	15.8537	2.88e-06	0.326	CTCACCCCAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	100	109	-	15.8537	2.88e-06	0.326	CTCACCCCAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	100	109	-	15.8537	2.88e-06	0.326	CTCACCCCAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	100	109	-	15.8537	2.88e-06	0.326	CTCACCCCAC
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	94	103	+	15.8537	2.88e-06	0.326	CTCACCCCAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	65	80	-	15.4	2.88e-06	0.0258	CTCCGCCCCCGCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	65	80	-	15.4	2.88e-06	0.0258	CTCCGCCCCCGCCCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	16	35	-	12.8991	2.88e-06	0.024	CACCCCCACCCCCACCCCCA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	22	41	-	12.8991	2.88e-06	0.024	CACCCCCACCCCCACCCCCA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	28	47	-	12.8991	2.88e-06	0.024	CACCCCCACCCCCACCCCCA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	1	14	+	14.2755	2.89e-06	0.0582	GAGGCCCGAGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	2	22	+	15.1429	2.89e-06	0.00295	GGAGCTGGGGAAGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	40	60	-	15.1429	2.89e-06	0.00295	GGGGGCGGGGGGGGCGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	40	60	-	15.1429	2.89e-06	0.00295	GGGGGCGGGGGGGGCGGGCGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	40	60	-	15.1429	2.89e-06	0.00295	GGGGGCGGGGGGGGCGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	40	60	-	15.1429	2.89e-06	0.00295	GGGGGCGGGGGGGGCGGGCGG
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	-	14.2571	2.89e-06	0.0458	CATTGCTATGACAACA
JUNB	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	90	100	+	15.4898	2.89e-06	0.0785	GAGTGACTCAG
JUNB	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	16	26	-	15.4898	2.89e-06	0.0785	GAGTGACTCAG
JUNB	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	16	26	-	15.4898	2.89e-06	0.0785	GAGTGACTCAG
JUNB	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	29	39	-	15.4898	2.89e-06	0.0785	AGGTGACTCAG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	63	76	-	13.2879	2.89e-06	0.379	GACCCTCCAGGAAG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	63	76	-	13.2879	2.89e-06	0.379	GACCCTCCAGGAAG
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	19	33	-	15.6552	2.9e-06	0.00186	CCCCCACCCCCACCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	25	39	-	15.6552	2.9e-06	0.00186	CCCCCACCCCCACCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	31	45	-	15.6552	2.9e-06	0.00186	CCCCCACCCCCACCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	37	51	-	15.6552	2.9e-06	0.00186	CCCCCACCCCCACCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	55	69	-	15.6552	2.9e-06	0.00186	GTCCCGCCCCGCGCA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	55	69	-	15.6552	2.9e-06	0.00186	GTCCCGCCCCGCGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	55	69	-	15.6552	2.9e-06	0.00186	GTCCCGCCCCGCGCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	55	69	-	15.6552	2.9e-06	0.00186	GTCCCGCCCCGCGCA
FOXC1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	12	-	14.54	2.9e-06	1	AATGTAAACAT
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	-	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	-	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	+	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	+	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	+	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	+	15.7818	2.9e-06	0.0625	GATGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	+	15.7818	2.9e-06	0.0625	GATGACTCATG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	46	60	-	15.377	2.9e-06	0.0254	GGCCCCGCCCACCCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	46	60	-	15.377	2.9e-06	0.0254	GGCCCCGCCCACCCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	46	60	-	15.377	2.9e-06	0.0254	GGCCCCGCCCACCCT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	46	60	-	15.377	2.9e-06	0.0254	GGCCCCGCCCACCCT
SPIC	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	66	-	15.2958	2.9e-06	0.0649	AGAAACAGGAAGTT
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	74	87	+	14.9848	2.9e-06	0.176	CGGGTCAGAGTTCA
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	74	87	+	14.9848	2.9e-06	0.176	CGGGTCAGAGTTCA
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	61	72	+	15.7377	2.9e-06	0.0691	TTCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	61	72	+	15.7377	2.9e-06	0.0691	TTCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	61	72	+	15.7377	2.9e-06	0.0691	TTCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	61	72	+	15.7377	2.9e-06	0.0691	TTCCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	61	72	+	15.7377	2.9e-06	0.0691	TTCCCGGAAGTG
KLF14	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	29	42	+	15.6724	2.91e-06	0.0111	AGCCCCGCCCCTCT
KLF14	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	73	86	-	15.6724	2.91e-06	0.0111	AGCCCCGCCCCTCT
KLF13	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	8	25	+	13.9138	2.91e-06	0.0601	AGACCACGCCCCCGCCTT
KLF13	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	90	107	-	13.9138	2.91e-06	0.0601	AGACCACGCCCCCGCCTT
RFX5	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	+	14.1897	2.91e-06	0.0406	CATTGCCATGGCAATT
RFX5	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	-	14.1897	2.91e-06	0.0406	CATTGCCATGGCAATT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	31	45	+	15.4426	2.91e-06	0.167	GTGACTCAGCTCTCT
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	38	48	+	15.2653	2.91e-06	0.219	CTTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	38	48	+	15.2653	2.91e-06	0.219	CTTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	38	48	+	15.2653	2.91e-06	0.219	CTTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	38	48	+	15.2653	2.91e-06	0.219	CTTTCCCAGAA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	22	32	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	22	32	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	22	32	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	22	32	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	26	36	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	26	36	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	26	36	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	26	36	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	55	65	-	15.75	2.91e-06	0.00229	GCCCCACCCCT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	13	29	-	13.6545	2.91e-06	0.0056	GCAGCCCCGCCCCCGGG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	13	29	-	13.6545	2.91e-06	0.0056	GCAGCCCCGCCCCCGGG
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	22	33	+	15.3553	2.91e-06	0.0111	TCCACGCCCACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	22	33	+	15.3553	2.91e-06	0.0111	TCCACGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	22	33	+	15.3553	2.91e-06	0.0111	TCCACGCCCACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	22	33	+	15.3553	2.91e-06	0.0111	TCCACGCCCACC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	99	111	-	15.541	2.92e-06	0.326	GTGTCTGGCACTC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	99	111	-	15.541	2.92e-06	0.326	GTGTCTGGCACTC
Esrra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	83	93	-	15.6909	2.92e-06	0.862	GTCAAGGTCAC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	38	57	-	12.8716	2.92e-06	0.024	ACCCACCCCCCACCCCCACC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	15.1212	2.92e-06	0.131	ATCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	15.1212	2.92e-06	0.131	ATCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	16.3286	2.92e-06	0.151	ATCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	16.3286	2.92e-06	0.151	ATCACGTGAC
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	6	15	+	12.9516	2.92e-06	0.627	CACATTCCTC
MSC	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	-	15.7683	2.92e-06	0.569	ACCAGCTGTT
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	6	15	+	13.4355	2.92e-06	0.741	CACATTCCTC
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	21	41	+	15.1224	2.93e-06	0.00298	TGAGCAGTAGGGGGAAGGGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	23	43	+	15.1224	2.93e-06	0.00298	GATGCAGGAGGCGATGGAGGG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	42	56	+	15.8462	2.93e-06	0.0551	GCTGCAGCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	42	56	+	15.8462	2.93e-06	0.0551	GCTGCAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	42	56	+	15.8462	2.93e-06	0.0551	GCTGCAGCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	42	56	+	15.8462	2.93e-06	0.0551	GCTGCAGCCAATCAG
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	-	15.5	2.93e-06	0.0473	CATTGCTATGACAACA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	16	30	+	15.5	2.93e-06	0.0701	CGAGGTGAAGGGGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	1	15	+	15.6379	2.94e-06	0.00187	GCTCCGCCCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	1	15	+	15.6379	2.94e-06	0.00187	GCTCCGCCCTCCCTC
SP2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	20	+	15.6379	2.94e-06	0.00187	GCCCCGCCTCGGCGG
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	7	21	-	15.6379	2.94e-06	0.00187	ACCCCTCCCCCCTCC
SP2	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	26	40	-	15.6379	2.94e-06	0.00187	GCCCCGCCCAGTCCG
SP2	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	89	+	15.6379	2.94e-06	0.00187	GCCCCGCCCAGTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	67	81	-	15.6379	2.94e-06	0.00187	ACCCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	67	81	-	15.6379	2.94e-06	0.00187	ACCCCGCCCCGCCCG
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	108	+	15.6379	2.94e-06	0.00187	ACCCCTCCCCCCTCC
SP2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	95	109	-	15.6379	2.94e-06	0.00187	GCCCCGCCTCGGCGG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	52	66	-	15.4262	2.94e-06	0.167	ATGACTCAGCCACTT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	23	37	+	15.4262	2.94e-06	0.167	ATGACTCAGCCACTT
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	26	38	+	15.5758	2.95e-06	0.274	GTTAATCATTCAC
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	26	38	+	15.5758	2.95e-06	0.274	GTTAATCATTCAC
SP3	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	41	51	+	14.813	2.95e-06	0.00655	CCCACTCCCCC
EGR1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	74	87	-	15.6346	2.95e-06	0.00376	GCTCCTCCTCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	28	41	+	15.6346	2.95e-06	0.00376	GCTCCTCCTCCGCC
SP4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	13	29	-	13.6182	2.95e-06	0.0056	GCAGCCCCGCCCCTGCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	30	46	+	13.6182	2.95e-06	0.0056	TTAGCCCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	30	46	+	13.6182	2.95e-06	0.0056	TTAGCCCCGCCCCGCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	29	45	-	13.6182	2.95e-06	0.0056	CCCGCCCCGCCCCCAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	29	45	-	13.6182	2.95e-06	0.0056	CCCGCCCCGCCCCCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	29	45	-	13.6182	2.95e-06	0.0056	CCCGCCCCGCCCCCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	29	45	-	13.6182	2.95e-06	0.0056	CCCGCCCCGCCCCCAGC
SP4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	86	102	+	13.6182	2.95e-06	0.0056	GCAGCCCCGCCCCTGCA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	70	80	-	15.6897	2.95e-06	0.0186	TGGCGGGAAAG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	64	77	+	14.4894	2.96e-06	0.0778	TGCCACCTGCTGGG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	92	105	+	14.4894	2.96e-06	0.0778	TGCCACCTGCTGGG
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	12	22	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	20	30	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	20	30	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	20	30	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	20	30	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	12	22	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	25	35	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	26	36	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	30	40	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	30	40	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	30	40	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	30	40	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	23	33	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	27	37	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	30	40	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	41	51	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	31	41	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	41	51	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	42	52	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	42	52	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	32	42	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	32	42	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	32	42	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	32	42	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	42	52	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	42	52	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	32	42	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	47	57	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	41	51	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	53	63	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	53	63	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	64	74	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	58	68	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	70	80	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	73	83	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	63	73	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	64	74	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	75	85	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	66	76	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	78	88	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	69	79	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	69	79	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	75	85	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	93	103	+	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	84	94	-	15.7818	2.96e-06	0.00339	CCGCCTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	85	95	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	93	103	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	93	103	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	93	103	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	93	103	-	15.7818	2.96e-06	0.00339	GCGCACGCGCA
JUND(var.2)	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	22	36	-	15.8511	2.96e-06	0.254	GGAAATGAGGTAATC
Hoxa11	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	28	39	-	14.7097	2.96e-06	0.71	GATCGTAAAAAT
Hoxa11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	28	39	-	14.7097	2.96e-06	0.71	GATCGTAAAAAT
Hoxa11	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	76	87	+	14.7097	2.96e-06	0.71	GATCGTAAAAAT
RFX2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	+	14.2	2.96e-06	0.0462	GGTTGCCGTGGCGACT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	9	29	-	15.102	2.97e-06	0.00301	GGAGCTGGGAAGAGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	9	29	-	15.102	2.97e-06	0.00301	GGAGCTGGGAAGAGGAGGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	86	106	+	15.102	2.97e-06	0.00301	GGAGCTGGGAAGAGGAGGAGG
ATF7	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	20	33	+	16.0143	2.97e-06	0.0727	AGGTGACGTCACAC
ATF7	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	82	95	-	16.0143	2.97e-06	0.0727	AGGTGACGTCACAC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	31	48	+	0.263158	2.97e-06	0.0149	GGAAGGAGGGAGAGATGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	67	84	-	0.263158	2.97e-06	0.0149	GGAAGGAGGGAGAGATGG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	+	15.1455	2.97e-06	0.0397	AGCCTCAGGCC
SP4	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	7	23	+	13.6	2.97e-06	0.0056	CTGACCCCGCCTCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	7	23	-	13.6	2.97e-06	0.0056	CTGACCCCGCCTCCCTC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	7	23	-	13.6	2.97e-06	0.0056	CTGACCCCGCCTCCCTC
SP4	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	92	108	+	13.6	2.97e-06	0.0056	CTGACCCCGCCTCCCTC
SP4	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	92	108	-	13.6	2.97e-06	0.0056	CTGACCCCGCCTCCCTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	44	+	15.6207	2.98e-06	0.00189	GCCCCGCCCCTGGAA
SP2	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	27	41	-	15.6207	2.98e-06	0.00189	GCACCGCCCCTCGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	15.6207	2.98e-06	0.112	GCCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	15.6207	2.98e-06	0.112	GCCACGTGCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	12	22	-	15.7414	2.98e-06	0.00479	GACACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	12	22	-	15.7414	2.98e-06	0.00479	GACACGCCCCT
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	50	64	+	15.5636	2.98e-06	0.194	TAAAAGGGAAAGCGT
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	50	64	+	15.5636	2.98e-06	0.194	TAAAAGGGAAAGCGT
SPIC	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	30	43	+	15.2676	2.98e-06	0.0649	GAAAACAGGAAGCA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	98	-	15.2676	2.98e-06	0.0649	GAAAACAGGAAGCA
NFATC1	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	51	60	+	11.4959	2.99e-06	0.954	ATTTTCCGTT
NFATC1	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	55	64	-	11.4959	2.99e-06	0.954	ATTTTCCGTT
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	67	81	-	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	67	81	-	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	67	81	-	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	94	108	-	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	7	21	+	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	7	21	+	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	7	21	+	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	7	21	+	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	34	48	+	15.6667	2.99e-06	0.0243	CTCTCGCGAGAAGCC
SP4	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	28	44	+	13.5818	2.99e-06	0.0056	GCAGCCCCGCCTCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	71	87	-	13.5818	2.99e-06	0.0056	GCAGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	71	87	-	13.5818	2.99e-06	0.0056	GCAGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	71	87	-	13.5818	2.99e-06	0.0056	GCAGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	71	87	-	13.5818	2.99e-06	0.0056	GCAGCCCCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	51	64	-	15.6154	2.99e-06	0.0038	CCCCCTCCCTCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	51	64	-	15.6154	2.99e-06	0.0038	CCCCCTCCCTCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	51	64	-	15.6154	2.99e-06	0.0038	CCCCCTCCCTCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	51	64	-	15.6154	2.99e-06	0.0038	CCCCCTCCCTCGCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	28	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	32	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	32	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	22	31	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	41	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	41	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	46	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	29	38	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	29	38	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	29	38	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	31	40	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	32	41	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	33	42	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	34	43	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	34	43	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	64	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	49	58	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	49	58	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	51	60	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	70	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	70	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	65	74	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	65	74	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	80	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	80	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	80	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	80	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	82	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	65	74	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	84	+	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	69	78	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	69	78	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	74	83	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	75	84	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	85	94	-	15.8776	3e-06	0.00343	GCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	85	94	-	15.8776	3e-06	0.00343	GCCCCACCCA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	10	25	+	15.3455	3e-06	0.0258	CCCCGCCCCCGCCACC
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	19	34	+	15.3455	3e-06	0.0258	CCCCGCCCCCGCCACC
EGR4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	34	49	+	15.3455	3e-06	0.0258	CCCCGCCCCCGCCACC
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	81	96	-	15.3455	3e-06	0.0258	CCCCGCCCCCGCCACC
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	-	15.5283	3e-06	1	AATTACGTAACG
Zfx	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	65	78	+	15.6667	3e-06	0.0108	TTGGCCGCGGCCTC
EBF1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	37	50	-	15.8689	3e-06	0.365	ATTCCCCAGGGAGG
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	64	78	-	15.6379	3e-06	0.235	CCGTTCCTGGGAAGC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	64	78	-	15.6379	3e-06	0.235	CCGTTCCTGGGAAGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	31	46	+	5.09615	3.01e-06	0.29	CGACCCGCCCCGTAGG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	31	46	+	5.09615	3.01e-06	0.29	CGACCCGCCCCGTAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	20	40	+	15.0816	3.01e-06	0.00303	AAGGAAGGGAGGGAAAGAAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	22	42	+	15.0816	3.01e-06	0.00303	GGGAGAGGGAGGCCGGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	8	28	-	15.0816	3.01e-06	0.00303	AAGGAAGGGAGGGAAAGAAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	87	107	+	15.0816	3.01e-06	0.00303	AAGGAAGGGAGGGAAAGAAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	73	93	-	15.0816	3.01e-06	0.00303	GGGAGAGGGAGGCCGGGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	75	95	-	15.0816	3.01e-06	0.00303	AAGGAAGGGAGGGAAAGAAGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	3	20	+	0.223684	3.01e-06	0.015	GAGGGGAGGGGAGGATGG
Rfx1	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	19	32	-	15.5172	3.01e-06	0.0456	ATTGCCATGGTAAC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	24	41	+	13.8276	3.01e-06	0.0601	AGACCACGCCCCCGCCGG
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	24	41	+	13.8276	3.01e-06	0.0601	AGACCACGCCCCCGCCGG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	24	41	+	13.8276	3.01e-06	0.0601	AGACCACGCCCCCGCCGG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	24	41	+	13.8276	3.01e-06	0.0601	AGACCACGCCCCCGCCGG
STAT3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	74	84	-	15.3673	3.01e-06	0.114	CTGCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	74	84	-	15.3673	3.01e-06	0.114	CTGCTGGGAAG
Ascl2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	-	15.5143	3.01e-06	0.14	AACAGCTGCC
SREBF2	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	35	44	+	15.7079	3.01e-06	0.871	GTGGGGTGAC
RELA	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	21	30	-	15.9286	3.01e-06	0.15	GGGGGTTTCC
RELA	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	49	58	+	15.9286	3.01e-06	0.15	GGGGGTTTCC
RELA	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	57	66	-	15.9286	3.01e-06	0.15	GGGGGTTTCC
RELA	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	85	94	+	15.9286	3.01e-06	0.15	GGGGGTTTCC
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	13.9592	3.01e-06	0.037	GCCACGTGAC
TFE3	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	13.9592	3.01e-06	0.037	GCCACGTGAC
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	+	15.5143	3.01e-06	0.14	AACAGCTGCC
ETV5	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	13.6545	3.01e-06	0.0501	ACCGGAAGCG
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
TFEB	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	15.1154	3.01e-06	0.0484	GCCACGTGAC
SREBF2	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	71	80	-	15.7079	3.01e-06	0.871	GTGGGGTGAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	23	36	+	15.6034	3.02e-06	0.0113	AGCCACGCCTACTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	23	36	+	15.6034	3.02e-06	0.0113	AGCCACGCCTACTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	23	36	+	15.6034	3.02e-06	0.0113	AGCCACGCCTACTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	23	36	+	15.6034	3.02e-06	0.0113	AGCCACGCCTACTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	6	20	+	15.7121	3.02e-06	0.0796	TGAGTTTCATTTCTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	6	20	+	15.7121	3.02e-06	0.0796	TGAGTTTCATTTCTT
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	35	49	+	15.7121	3.02e-06	0.0796	TGAGTTTCATTTCTT
STAT1::STAT2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	84	98	+	15.7121	3.02e-06	0.0796	CCGGTTTCCTTTCCC
STAT1::STAT2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	17	31	-	15.7121	3.02e-06	0.0796	CCGGTTTCCTTTCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	11	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	11	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	21	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	11	21	-	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	11	21	-	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	38	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	38	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	32	42	-	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	32	42	-	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	63	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	83	+	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	77	87	-	15.7308	3.02e-06	0.00235	GCTCCGCCCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	20	+	15.6034	3.02e-06	0.00191	CCCCCGCCCCCTTAT
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	20	34	+	15.6034	3.02e-06	0.00191	TCCCCTCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	44	58	-	15.6034	3.02e-06	0.00191	TCCCCTCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	44	58	-	15.6034	3.02e-06	0.00191	TCCCCTCCCCTGCCC
IRF1	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	11	31	+	15.4032	3.03e-06	0.0724	TTTTGCTTTCTTTTTCTGCCC
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	63	83	+	15.4032	3.03e-06	0.0724	TTTTGCTTTCTTTTTCTGCCC
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	63	83	+	15.4032	3.03e-06	0.0724	TTTTGCTTTCTTTTTCTGCCC
EGR1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	14	27	-	15.5962	3.03e-06	0.00382	CCCCCGCCCCTGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	28	41	-	15.5962	3.03e-06	0.00382	GCTCCACCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	101	+	15.5962	3.03e-06	0.00382	CCCCCGCCCCTGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	101	+	15.5962	3.03e-06	0.00382	CCCCCGCCCCTGCG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	+	15.8103	3.03e-06	0.0343	TCCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	-	15.8103	3.03e-06	0.0343	TCCCCTCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	-	15.8103	3.03e-06	0.0343	TCCCCTCGGGGCC
Gabpa	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	12	22	+	15.7705	3.03e-06	0.018	CCGGAAGTGAT
Gabpa	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	28	38	+	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	29	39	+	15.7705	3.03e-06	0.018	CCGGAAGTGAT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	69	79	+	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	57	67	-	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	57	67	-	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	77	87	-	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	77	87	-	15.7705	3.03e-06	0.018	CCGGAAGTAGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	77	87	-	15.7705	3.03e-06	0.018	CCGGAAGTAGC
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	13	28	+	15.3273	3.04e-06	0.0258	CCCCGCCCCCGCCCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	60	75	-	15.3273	3.04e-06	0.0258	CCCCGCCCCCGCCCCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	87	102	-	15.3273	3.04e-06	0.0258	CCCCGCCCCCGCCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	46	60	-	14.7069	3.04e-06	0.02	CCCCTCCCCCGCATC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	52	66	-	14.7069	3.04e-06	0.02	CCCCTCCCCCGCATC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	19	33	+	14.7069	3.04e-06	0.02	CCCCTCCCCCGCATC
EGR3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	49	63	+	14.7069	3.04e-06	0.02	CCCCTCCCCCGCATC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	55	69	+	14.7069	3.04e-06	0.02	CCCCTCCCCCGCATC
ZBED1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	19	31	+	14.6545	3.04e-06	1	GTATCGCGATATC
ZNF263	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	47	67	+	15.0612	3.05e-06	0.00305	GAGGGAAGGAGGGAGGGGCGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	48	68	-	15.0612	3.05e-06	0.00305	GAGGGAAGGAGGGAGGGGCGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	55	75	-	15.0612	3.05e-06	0.00305	AGGAGAGGAGAGGGGGGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	64	84	-	15.0612	3.05e-06	0.00305	GAGGGAAGAGGAAGGGAGGCA
SP8	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	32	43	+	15.2895	3.05e-06	0.0115	GCCACGCCTCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	72	83	-	15.2895	3.05e-06	0.0115	GCCACGCCTCCT
BATF3	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	36	49	+	11.7576	3.05e-06	0.0776	TGGTGACGTCAGAG
BATF3	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	66	79	-	11.7576	3.05e-06	0.0776	TGGTGACGTCAGAG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	3	13	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	3	13	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	32	42	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	51	61	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	94	104	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	94	104	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	94	104	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	99	109	-	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	6	16	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	28	38	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	28	38	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	28	38	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	54	64	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	73	83	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
E2F6	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	102	112	+	15.6207	3.05e-06	0.022	GGGAGGGAAGG
ELF4	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	64	75	+	15.6721	3.05e-06	0.0428	GAGCCGGAAGTG
ELF4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	27	-	15.6721	3.05e-06	0.0428	GAGCCGGAAGTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	2	15	-	15.6515	3.05e-06	0.0108	AGGGGCGAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	63	76	+	15.6515	3.05e-06	0.0108	AGGGGCGAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	63	76	+	15.6515	3.05e-06	0.0108	AGGGGCGAGGCCTC
MAFF	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	61	78	-	15.4	3.05e-06	0.54	CACAAGTCAGCATTTAGT
MAFF	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	37	54	+	15.4	3.05e-06	0.54	CACAAGTCAGCATTTAGT
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	5	15	+	15.7455	3.05e-06	0.00347	GCGCGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	5	15	+	15.7455	3.05e-06	0.00347	GCGCGGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	35	45	+	15.7455	3.05e-06	0.00347	GCGCGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	35	45	+	15.7455	3.05e-06	0.00347	GCGCGGGCGCA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	41	57	+	13.5273	3.05e-06	0.00565	CCTGCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	41	57	+	13.5273	3.05e-06	0.00565	CCTGCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	41	57	+	13.5273	3.05e-06	0.00565	CCTGCCCCGCCCCCGCC
SP4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	58	74	-	13.5273	3.05e-06	0.00565	CCTGCCCCGCCCCCGCC
TP63	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	-	10.7241	3.06e-06	0.44	GACGAGTTCGGGCTCGTC
TP63	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	+	10.7241	3.06e-06	0.44	GACGAGTTCGGGCTCGTC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	6	16	+	15.4694	3.06e-06	0.0785	GGGTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	6	16	+	15.4694	3.06e-06	0.0785	GGGTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	21	31	+	15.4694	3.06e-06	0.0785	GGGTGACTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	27	37	-	15.4694	3.06e-06	0.0785	GGGTGACTCAC
Mecom	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	41	54	+	15.7753	3.06e-06	0.403	CAGATAAGACAATA
Mecom	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	41	54	+	15.7753	3.06e-06	0.403	CAGATAAGACAATA
Mecom	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	41	54	+	15.7753	3.06e-06	0.403	CAGATAAGACAATA
Mecom	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	41	54	+	15.7753	3.06e-06	0.403	CAGATAAGACAATA
Mecom	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	61	74	-	15.7753	3.06e-06	0.403	CAGATAAGACAATA
EGR1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	36	49	-	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	88	101	-	15.5769	3.07e-06	0.00383	GCCCTGCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	65	+	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	65	+	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	65	+	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	65	+	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	79	+	15.5769	3.07e-06	0.00383	TCCCCGCCCCTGCC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	79	93	+	15.0263	3.07e-06	0.0864	ACAATGACTCTGCAG
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	24	38	-	15.0263	3.07e-06	0.0864	ACAATGACTCTGCAG
SP2	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	4	18	+	15.5862	3.07e-06	0.00192	TCTCCGCCCCTGCCC
SP2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	30	+	15.5862	3.07e-06	0.00192	CCCCCGCCCCGCGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	9	23	-	15.5862	3.07e-06	0.00192	GTCCCGCCCCACGCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	9	23	-	15.5862	3.07e-06	0.00192	GTCCCGCCCCACGCA
SP2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	14	28	-	15.5862	3.07e-06	0.00192	CCCCCGCCCCGCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	43	+	15.5862	3.07e-06	0.00192	ACCCCACCCCCTGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	43	+	15.5862	3.07e-06	0.00192	ACCCCACCCCCTGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	35	49	+	15.5862	3.07e-06	0.00192	TCTCCGCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	35	49	+	15.5862	3.07e-06	0.00192	TCTCCGCCCCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	101	+	15.5862	3.07e-06	0.00192	CCCCCGCCCCGCGGC
SP2	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	92	106	+	15.5862	3.07e-06	0.00192	GTCCCGCCCCACGCA
SP2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	85	99	-	15.5862	3.07e-06	0.00192	CCCCCGCCCCGCGGC
SP2	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	97	111	-	15.5862	3.07e-06	0.00192	TCTCCGCCCCTGCCC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	71	86	+	12.9818	3.07e-06	0.0823	GGGAGCGAAGTCCAGC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	71	86	+	12.9818	3.07e-06	0.0823	GGGAGCGAAGTCCAGC
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	71	86	+	12.9818	3.07e-06	0.0823	GGGAGCGAAGTCCAGC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	62	72	+	15.7424	3.07e-06	0.0344	CACCACACCCA
Gata4	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	3	13	-	15.2241	3.08e-06	0.58	TCTTATCTCTG
Gata4	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	37	47	-	15.2241	3.08e-06	0.58	TCTTATCTCTG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	83	97	-	15.6212	3.08e-06	0.0244	CTCTCGCGAGCGCGA
ZBTB33	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	18	32	+	15.6212	3.08e-06	0.0244	CTCTCGCGAGCGCGA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	91	107	-	15.4082	3.08e-06	0.338	GGGTCACCTGGCGGCCA
TGIF1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	-	11.4615	3.08e-06	0.246	TGACATCTGACA
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	34	45	+	15.2	3.08e-06	0.439	TGTTGACTCAGG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	23	-	15.4143	3.08e-06	0.0701	GGGGGGCGGGGGGCA
Klf12	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	2	16	+	15.2623	3.08e-06	0.0259	GGCCCCGCCCTTCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	11	25	+	15.2623	3.08e-06	0.0259	CGCCACGCCCTCCTG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	11	25	+	15.2623	3.08e-06	0.0259	CGCCACGCCCTCCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	26	40	+	15.2623	3.08e-06	0.0259	CGCCACGCCCTCCTG
POU1F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	31	44	+	15.4828	3.09e-06	0.835	CAAATGCAAATGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	6	26	+	15.0408	3.09e-06	0.00306	AGAAGAGGAGTGGAGGAGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	18	38	+	15.0408	3.09e-06	0.00306	AGGGGCGGGGATAGAGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	10	30	-	15.0408	3.09e-06	0.00306	GGAGGAGGGGCCCGAGGAGCA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	42	-	15.0408	3.09e-06	0.00306	GGGGGGGGGGGGGGGGGGGTG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	44	64	+	15.0408	3.09e-06	0.00306	AGGGGCGGGGATAGAGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	51	71	-	15.0408	3.09e-06	0.00306	AGGGGCGGGGATAGAGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	53	73	-	15.0408	3.09e-06	0.00306	GAAGGAAAGGCAGGAGGGGGT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	85	105	+	15.0408	3.09e-06	0.00306	GGAGGAGGGGCCCGAGGAGCA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	77	97	-	15.0408	3.09e-06	0.00306	AGGGGCGGGGATAGAGGAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	88	108	-	15.0408	3.09e-06	0.00306	GGTGAAGGGGCAGCAGGAGAG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	75	94	+	12.7339	3.09e-06	0.0251	TCCCCAACCACCAGCCACAG
BHLHE40	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	15.3269	3.09e-06	0.1	GTCACGTGCC
BHLHE40	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	15.3269	3.09e-06	0.1	GTCACGTGCC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	56	65	+	13.4141	3.09e-06	0.0542	GTAGGGGGAG
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	20	29	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	20	29	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	11	20	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	11	20	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	20	29	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	12	21	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	12	21	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	32	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	32	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	28	37	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	21	30	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	32	41	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	42	51	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	42	51	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	42	51	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	74	83	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	85	94	+	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	86	95	-	15.5138	3.09e-06	0.0144	ACCCCCCCCC
ELF4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	25	36	+	15.6557	3.09e-06	0.0428	AGCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	90	-	15.6557	3.09e-06	0.0428	AGCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	90	-	15.6557	3.09e-06	0.0428	AGCCCGGAAGTG
USF1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	31	41	-	15.5918	3.09e-06	0.0533	GGCATGTGACC
EHF	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	25	36	+	15.6393	3.09e-06	0.0691	CAGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	90	-	15.6393	3.09e-06	0.0691	CAGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	90	-	15.6393	3.09e-06	0.0691	CAGCCGGAAGTG
EGR3	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	13	27	-	14.6724	3.09e-06	0.02	CACCGCCCACGCCGG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	48	64	+	13.4909	3.1e-06	0.00572	CGGGCCCCGCCCCTCGC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	16	29	+	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	16	29	+	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	16	29	+	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	16	29	+	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	93	-	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	93	-	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	93	-	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	93	-	15.2113	3.1e-06	0.0649	TAAAACAGGAAGTT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	19	31	+	15.459	3.1e-06	0.326	CAGTCTGACAGCT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	-	15.7636	3.1e-06	0.0641	GGTGACTCAGA
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	-	15.7636	3.1e-06	0.0641	GGTGACTCAGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	30	+	15.569	3.11e-06	0.00194	TCCCCACCCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	30	+	15.569	3.11e-06	0.00194	TCCCCACCCCCGGCC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	70	+	15.569	3.11e-06	0.00194	CCCCCTCCCTCCCCC
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	45	59	-	15.569	3.11e-06	0.00194	CCCCCTCCCTCCCCC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	59	-	15.3091	3.11e-06	0.0222	GCGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	59	-	15.3091	3.11e-06	0.0222	GCGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	59	-	15.3091	3.11e-06	0.0222	GCGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	59	-	15.3091	3.11e-06	0.0222	GCGCTTCCGGG
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	34	47	+	16.5169	3.11e-06	0.464	GAAATTTAGGTCAC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	39	52	-	15.5577	3.12e-06	0.00386	GCCCCTCCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	6	19	+	15.5577	3.12e-06	0.00386	CTCCCTCCCCCACT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	6	19	+	15.5577	3.12e-06	0.00386	CTCCCTCCCCCACT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	43	+	15.5577	3.12e-06	0.00386	GCCCCTCCCCCAGC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	+	14.9273	3.12e-06	0.054	TCCCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	+	14.9273	3.12e-06	0.054	TCCCCTCGGGCG
KLF14	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	27	40	-	15.5517	3.12e-06	0.0115	GGCCACGCCCCGCT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	96	105	+	15.0857	3.12e-06	0.427	CCATTGTTCT
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	96	105	+	15.0857	3.12e-06	0.427	CCATTGTTCT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	-	15.42	3.12e-06	0.744	ATTACGCAAC
Sox6	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	10	19	-	15.0857	3.12e-06	0.427	CCATTGTTCT
Esrrg	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	83	92	-	15.7755	3.12e-06	0.702	TCAAGGTCAC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	55	70	-	15.2909	3.12e-06	0.0258	CCACGCCCCCGCCTGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	26	46	+	15.0204	3.13e-06	0.00308	GGGGCCGGAGGTGGGGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	70	90	-	15.0204	3.13e-06	0.00308	GGGGCCGAGAGAAGAGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	75	95	-	15.0204	3.13e-06	0.00308	AAGGGAGGTGGGAGAGGAAGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	92	112	-	15.0204	3.13e-06	0.00308	GAAGGGGGTGGGAGAGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	92	112	-	15.0204	3.13e-06	0.00308	GAAGGGGGTGGGAGAGGGGGG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	+	14.9091	3.13e-06	0.0893	CGCCCCAAGGCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	-	14.9091	3.13e-06	0.0893	CGCCCCAAGGCG
SP4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	53	69	+	13.4545	3.14e-06	0.00576	ATAAACCCGCCCCCACA
SP4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	46	62	-	13.4545	3.14e-06	0.00576	ATAAACCCGCCCCCACA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	93	104	-	15.6818	3.14e-06	0.0647	CGGGGTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	93	104	-	15.6818	3.14e-06	0.0647	CGGGGTCCGCGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	19	33	-	15.5517	3.14e-06	0.00195	TCCCCGCCTCCTCTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	57	71	+	15.5517	3.14e-06	0.00195	GGCCCGCCCTCTGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	57	71	+	15.5517	3.14e-06	0.00195	GGCCCGCCCTCTGCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	82	96	+	15.5517	3.14e-06	0.00195	CTCCCTCCCCCGGCC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	58	78	+	15.3387	3.14e-06	0.0724	TTGCAGTTCTACTTTCTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	59	79	-	15.3387	3.14e-06	0.0724	TTGCAGTTCTACTTTCTTTTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	11	24	-	15.6212	3.14e-06	0.0109	CCGCCCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	11	24	-	15.6212	3.14e-06	0.0109	CCGCCCCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	11	24	-	15.6212	3.14e-06	0.0109	CCGCCCCCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	11	24	-	15.6212	3.14e-06	0.0109	CCGCCCCCGGCCTC
CREB3	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	73	86	+	15.6286	3.15e-06	0.196	ATGCGACGTCACCC
ETV3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	15.2676	3.15e-06	0.0449	ACCGGATGTG
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	14	24	+	14.8364	3.15e-06	0.239	AGGGTATCAGG
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	57	67	-	14.8364	3.15e-06	0.239	AGGGTATCAGG
Spz1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	57	67	-	14.8364	3.15e-06	0.239	AGGGTATCAGG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	13	30	+	15.4146	3.15e-06	0.0295	CGTCTTCTCATTGGCCGG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	13	30	+	15.4146	3.15e-06	0.0295	CGTCTTCTCATTGGCCGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	34	48	+	14.6379	3.15e-06	0.02	CCCCCCCCCCGCACG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	8	22	-	15.3818	3.15e-06	0.0875	CGCCACCCGCCGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	8	22	-	15.3818	3.15e-06	0.0875	CGCCACCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	8	22	-	15.3818	3.15e-06	0.0875	CGCCACCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	8	22	-	15.3818	3.15e-06	0.0875	CGCCACCCGCCGCGC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	98	+	15.1633	3.16e-06	0.0832	AACAGCTGCTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	60	73	-	15.5385	3.16e-06	0.00386	GCCACGCCCACGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	65	78	-	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	68	81	-	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	81	94	-	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	21	34	+	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	29	42	+	15.5385	3.16e-06	0.00386	TGCCCTCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	29	42	+	15.5385	3.16e-06	0.00386	TGCCCTCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	29	42	+	15.5385	3.16e-06	0.00386	TGCCCTCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	33	46	+	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	33	46	+	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	87	100	+	15.5385	3.16e-06	0.00386	CTGCCGCCGCCGCC
RFX3	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	-	15.1818	3.16e-06	0.045	AATTGCCATGGCAATG
RFX3	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	+	15.1818	3.16e-06	0.045	AATTGCCATGGCAATG
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	37	57	-	12.7347	3.16e-06	0.106	GCCAGCACCTGGGAGGGGAGC
SP4	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	15	31	+	13.4364	3.16e-06	0.00578	AGGGCCCCGCCCACGCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	48	64	+	13.4364	3.16e-06	0.00578	AGAGCCCCGCCCCCGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	5	15	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	5	15	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	5	15	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	5	15	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	5	15	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	20	30	+	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	15	25	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	15	25	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	18	28	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	18	28	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	32	42	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	32	42	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	47	57	+	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	47	57	+	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	49	59	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	58	68	-	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	90	100	+	15.6552	3.16e-06	0.0186	GGGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	96	106	+	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	96	106	+	15.6552	3.16e-06	0.0186	GGGCGGGAGGT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	87	105	-	15.2903	3.16e-06	0.101	AGGGGCAGCCGAGCAGGGG
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	87	105	-	15.2903	3.16e-06	0.101	AGGGGCAGCCGAGCAGGGG
Pax6	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	55	68	+	15.2222	3.16e-06	1	ATTACGCATGAGTT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	5	22	+	0.0526316	3.17e-06	0.0157	GGGAAGAGCGGAGGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	28	48	+	15	3.17e-06	0.00311	CGGGGAGGAGGCGGGGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	25	45	-	15	3.17e-06	0.00311	TGGTGTGGAGGGGGAGGAGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	64	84	+	15	3.17e-06	0.00311	CGAGGCGCGGGAGGAGGAGAA
Gabpa	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	32	42	+	15.7213	3.17e-06	0.018	CCGGAAGCGGT
Gabpa	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	55	65	+	15.7213	3.17e-06	0.018	CCGGAAGCGGT
Gabpa	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	50	60	-	15.7213	3.17e-06	0.018	CCGGAAGCGGT
Gabpa	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	73	83	-	15.7213	3.17e-06	0.018	CCGGAAGCGGT
POU3F1	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	68	79	+	14.8434	3.17e-06	0.497	TTATGCAAATGC
POU3F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	36	47	-	14.8434	3.17e-06	0.497	TTATGCAAATGC
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	36	47	-	14.8434	3.17e-06	0.497	TTATGCAAATGC
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	36	47	-	14.8434	3.17e-06	0.497	TTATGCAAATGC
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	36	47	-	14.8434	3.17e-06	0.497	TTATGCAAATGC
ELF1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	27	-	15.6182	3.17e-06	0.0507	GAGCCGGAAGTG
ELF1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	64	75	+	15.6182	3.17e-06	0.0507	GAGCCGGAAGTG
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	1	21	-	15.3226	3.17e-06	0.0724	CCTTAGTTTCATTTCTCTTTT
JUND	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	+	16.0638	3.17e-06	0.105	AGTGAGTCATC
JUND	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	-	16.0638	3.17e-06	0.105	AGTGAGTCATC
Bach1::Mafk	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	89	103	+	14.9605	3.18e-06	0.0864	AGAGTGACTCAGCCT
Bach1::Mafk	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	13	27	-	14.9605	3.18e-06	0.0864	AGAGTGACTCAGCCT
Bach1::Mafk	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	13	27	-	14.9605	3.18e-06	0.0864	AGAGTGACTCAGCCT
ETS1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	15.1034	3.18e-06	0.0577	ACCGGAAGCG
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	16.4231	3.18e-06	0.0509	GTCACGTGAT
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	16.4231	3.18e-06	0.0509	GTCACGTGAT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	16	29	+	15.5172	3.18e-06	0.0115	GGCCCCGCCCCTTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	16	29	+	15.5172	3.18e-06	0.0115	GGCCCCGCCCCTTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	16	29	+	15.5172	3.18e-06	0.0115	GGCCCCGCCCCTTG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	16	29	+	15.5172	3.18e-06	0.0115	GGCCCCGCCCCTTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	22	36	+	15.5345	3.18e-06	0.00198	GCCCCGCCCTGCCCT
SP2	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	14	28	-	15.5345	3.18e-06	0.00198	CTTCCGCCCCCGGCC
SP2	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	87	101	+	15.5345	3.18e-06	0.00198	CTTCCGCCCCCGGCC
CREB3	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	9	22	-	15.6143	3.18e-06	0.196	CTGAGACGTCATCA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	59	73	+	15.5758	3.19e-06	0.0245	ATCCCGCGAGACTCC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	69	+	14.9143	3.19e-06	0.0755	GCCCCCCCCCCGTGC
Znf423	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	5	19	-	15.4494	3.19e-06	0.163	AGAACCAAGGGGGGC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	+	15.623	3.19e-06	0.039	TCCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	-	15.623	3.19e-06	0.039	TCCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	-	15.623	3.19e-06	0.039	TCCCCTCGGGGCC
SP3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	91	101	+	14.7236	3.2e-06	0.00701	ACCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	14	24	-	14.7236	3.2e-06	0.00701	ACCACGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	14	24	-	14.7236	3.2e-06	0.00701	ACCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	14	24	-	14.7236	3.2e-06	0.00701	ACCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	14	24	-	14.7236	3.2e-06	0.00701	ACCACGCCCCT
EGR1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	77	90	-	15.5192	3.2e-06	0.0039	CCTCCTCCCCCTGC
EGR1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	25	38	+	15.5192	3.2e-06	0.0039	CCTCCTCCCCCTGC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	27	40	+	11.6061	3.2e-06	0.0776	TGATGACGTAAGCC
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	27	40	+	11.6061	3.2e-06	0.0776	TGATGACGTAAGCC
RFX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	-	13.9828	3.2e-06	0.044	CATTGCTATGACAACA
HINFP	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	31	42	+	15.6667	3.2e-06	0.0647	CAGCGTCCGCCA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	26	40	-	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	55	69	-	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	56	70	-	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	69	83	-	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	45	59	+	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	45	59	+	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	45	59	+	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	75	89	+	14.6034	3.21e-06	0.02	CCCCGCCCCCGCCGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	92	112	-	14.9796	3.21e-06	0.00314	GAAGGGGGTGGGAGAGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	92	112	-	14.9796	3.21e-06	0.00314	GAAGGGGGTGGGAGAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	92	112	-	14.9796	3.21e-06	0.00314	GAAGGGGGTGGGAGAGGGGGA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	26	36	+	15.697	3.21e-06	0.0344	AGCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	26	36	+	15.697	3.21e-06	0.0344	AGCCCCACCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	61	71	+	15.697	3.21e-06	0.0344	AGCCCCACCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	44	54	-	15.697	3.21e-06	0.0344	AGCCCCACCCT
Klf1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	79	89	-	15.697	3.21e-06	0.0344	AGCCCCACCCT
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	2	16	+	15.4091	3.21e-06	0.143	GATGATGACTCTGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	2	16	+	15.4091	3.21e-06	0.143	GATGATGACTCTGCA
Tcf7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	21	32	-	15.6613	3.22e-06	1	AGAGATCAAAGT
Tcf7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	21	32	-	15.6613	3.22e-06	1	AGAGATCAAAGT
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	93	113	-	12.6939	3.22e-06	0.106	GGCAGGACCTGGGCTAGAGCT
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	93	113	-	12.6939	3.22e-06	0.106	GGCAGGACCTGGGCTAGAGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	+	15.6364	3.22e-06	0.0519	AGCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	-	15.6364	3.22e-06	0.0519	AGCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	-	15.6364	3.22e-06	0.0519	AGCCCCAGGCT
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	14.1346	3.22e-06	0.276	CCCACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	14.1346	3.22e-06	0.276	CCCACGTGCC
MAX	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	14.1346	3.22e-06	0.276	CCCACGTGCC
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	14.1346	3.22e-06	0.276	CCCACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	14.1346	3.22e-06	0.276	CCCACGTGCC
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	28	39	-	15.5	3.22e-06	0.447	ATATGCAAATCA
NRF1	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	23	33	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	24	34	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	16	26	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	30	40	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	33	43	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	33	43	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	36	46	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	30	40	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	30	40	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	53	63	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	64	74	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	64	74	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	64	74	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	64	74	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	64	74	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	55	65	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	65	75	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	69	79	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	72	82	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	89	99	+	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	81	91	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	82	92	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	82	92	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	82	92	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	82	92	-	15.7273	3.22e-06	0.00349	GAGCATGCGCA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	23	40	-	15.378	3.22e-06	0.0295	TGCCCTGTGATTGGTGGA
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	23	40	-	15.378	3.22e-06	0.0295	TGCCCTGTGATTGGTGGA
RREB1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	10	29	-	12.6239	3.22e-06	0.0254	AACCACCCCACCACCTATAC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	86	105	+	12.6239	3.22e-06	0.0254	AACCACCCCACCACCTATAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	86	105	+	12.6239	3.22e-06	0.0254	AACCACCCCACCACCTATAC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	29	45	-	13.3818	3.23e-06	0.00588	AAGGCCCCGCCCCAGCC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	78	92	-	15.5606	3.23e-06	0.0245	ATCTCGCGATACTAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	78	92	-	15.5606	3.23e-06	0.0245	ATCTCGCGATACTAG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	23	37	+	15.5606	3.23e-06	0.0245	ATCTCGCGATACTAG
KLF16	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	71	81	+	15.5862	3.23e-06	0.00516	GCCACACCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	86	+	15.5862	3.23e-06	0.00516	GCCACACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	34	44	-	15.5862	3.23e-06	0.00516	GCCACACCCAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	21	35	-	15.5172	3.23e-06	0.00199	ACCCCGCCCTCACCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	34	48	-	15.5172	3.23e-06	0.00199	GCCCCACCCTCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	34	48	-	15.5172	3.23e-06	0.00199	GCCCCACCCTCCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	65	+	15.5172	3.23e-06	0.00199	CTCCCGCCCACGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	65	+	15.5172	3.23e-06	0.00199	CTCCCGCCCACGCCG
SP2	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	81	+	15.5172	3.23e-06	0.00199	GCCCCACCCTCCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	59	73	-	15.5172	3.23e-06	0.00199	TCCCCGCCCCATTCC
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	92	105	+	15.3448	3.23e-06	0.0805	TTTCCGGGAACCGA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	92	105	+	15.3448	3.23e-06	0.0805	TTTCCGGGAACCGA
Stat4	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	10	23	-	15.3448	3.23e-06	0.0805	TTTCCGGGAACCGA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	10	22	-	12.5918	3.23e-06	0.224	CGGGGACTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	10	22	-	12.5918	3.23e-06	0.224	CGGGGACTCCCCG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	10	22	-	12.5918	3.23e-06	0.224	CGGGGACTCCCCG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	10	22	-	12.5918	3.23e-06	0.224	CGGGGACTCCCCG
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	13	27	+	15.6212	3.23e-06	0.0796	TTGCTTTCTTTTTCT
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	47	61	+	15.6212	3.23e-06	0.0796	TTGCTTTCTTTTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	65	79	+	15.6212	3.23e-06	0.0796	TTGCTTTCTTTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	65	79	+	15.6212	3.23e-06	0.0796	TTGCTTTCTTTTTCT
TCF4	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	12	21	-	14.5102	3.24e-06	0.207	CGCACCTGGC
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	49	58	+	14.5102	3.24e-06	0.207	CGCACCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	49	58	+	14.5102	3.24e-06	0.207	CGCACCTGGC
TCF4	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	57	66	-	14.5102	3.24e-06	0.207	CGCACCTGGC
TCF4	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	94	103	+	14.5102	3.24e-06	0.207	CGCACCTGGC
PAX5	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	21	39	+	15.2581	3.24e-06	0.101	GGCGCCAGCGAAGCGGAAC
PAX5	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	76	94	-	15.2581	3.24e-06	0.101	GGCGCCAGCGAAGCGGAAC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	62	75	-	15.5	3.24e-06	0.00393	CCGCCGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	62	75	-	15.5	3.24e-06	0.00393	CCGCCGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	68	81	-	15.5	3.24e-06	0.00393	CCGCCGCCGCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	69	82	+	15.5	3.24e-06	0.00393	CCGCCGCCGCCACC
RFX3	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	+	15.1364	3.24e-06	0.045	GGTTGCCGTGGCGACT
SP4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	30	46	+	13.3636	3.25e-06	0.00591	CCCGCCCCGCCCCCGCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	38	+	15.6346	3.25e-06	0.00249	TTCCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	21	31	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	21	31	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	33	43	+	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	23	33	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	25	35	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	34	44	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	51	61	+	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	62	72	+	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	54	64	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	57	67	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	57	67	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	57	67	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	57	67	-	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	84	94	+	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	84	94	+	15.6346	3.25e-06	0.00249	TCCCCGCCTCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	11.6923	3.25e-06	0.0721	GGCACGTGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	11.6923	3.25e-06	0.0721	GGCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	11.6923	3.25e-06	0.0721	GGCACGTGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	11.6923	3.25e-06	0.0721	GGCACGTGCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	21	38	-	-0.0263158	3.25e-06	0.016	AGGAGGGAGGAAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	19	39	-	14.9592	3.25e-06	0.00316	GGTGGAATGGGGGCAGGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	43	63	+	14.9592	3.25e-06	0.00316	GGAGGCGGCGGCGCGGGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	52	72	-	14.9592	3.25e-06	0.00316	GGAGGCGGCGGCGCGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	83	103	-	14.9592	3.25e-06	0.00316	GGGAGAGGGGGGAAAGAAGGC
EGR2	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	17	27	+	15.4828	3.26e-06	0.0586	GCGCCCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	88	98	-	15.4828	3.26e-06	0.0586	GCGCCCACGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	+	15.7869	3.26e-06	0.0537	TGCCCCGAAGGCC
FOXP1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	38	52	+	15.3521	3.26e-06	0.297	AAAAAAAAAACAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	63	77	-	15.3521	3.26e-06	0.297	AAAAAAAAAACAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	63	77	-	15.3521	3.26e-06	0.297	AAAAAAAAAACAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	63	77	-	15.3521	3.26e-06	0.297	AAAAAAAAAACAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	63	77	-	15.3521	3.26e-06	0.297	AAAAAAAAAACAAAA
IRF1	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	18	38	-	15.2742	3.26e-06	0.0724	GTTAAGTTTCACTTACGTTTT
IRF1	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	77	97	+	15.2742	3.26e-06	0.0724	GTTAAGTTTCACTTACGTTTT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	78	91	+	15.5	3.27e-06	0.118	GCAGGATGACTCAT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	24	35	+	15.2237	3.27e-06	0.0121	GCCACGCCTACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	24	35	+	15.2237	3.27e-06	0.0121	GCCACGCCTACT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	24	35	+	15.2237	3.27e-06	0.0121	GCCACGCCTACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	24	35	+	15.2237	3.27e-06	0.0121	GCCACGCCTACT
SP2	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	9	23	+	15.5	3.27e-06	0.00201	CGCCCTCCCCCGCCC
SP2	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	57	+	15.5	3.27e-06	0.00201	GCACCGCCCCTCCGC
SP2	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	58	72	-	15.5	3.27e-06	0.00201	GCACCGCCCCTCCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	92	106	-	15.5	3.27e-06	0.00201	CGCCCTCCCCCGCCC
Rarb	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	1	16	-	7.7931	3.27e-06	0.742	TAGTGTCATGAGGTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	41	+	15.4808	3.28e-06	0.00397	TTCCCGCCCCCGGA
Pou2f3	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	56	71	-	15.6951	3.28e-06	0.428	GCCTATGCAAATAAGC
Pou2f3	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	44	59	+	15.6951	3.28e-06	0.428	GCCTATGCAAATAAGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	42	52	+	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	42	52	+	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	42	52	+	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	42	52	+	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	12	22	-	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	17	27	-	15.6721	3.28e-06	0.018	CCGGAAGCGCG
Gabpa	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	63	73	-	15.6721	3.28e-06	0.018	CCGGAAGCGCG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	57	69	+	15.4848	3.28e-06	0.196	AGGGGCTTTCCCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	10	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	10	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	10	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	12	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	12	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	4	13	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	14	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	14	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	14	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	14	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	7	16	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	17	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	17	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	10	19	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	21	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	21	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	21	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	22	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	22	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	22	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	22	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	22	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	26	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	26	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	26	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	26	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	27	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	28	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	22	31	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	31	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	32	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	32	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	34	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	26	35	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	27	36	-	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	28	37	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	37	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	37	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	37	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	39	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	40	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	40	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	40	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	40	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	40	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	31	40	-	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	41	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	32	41	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	41	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	41	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	42	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	35	44	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	45	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	50	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	50	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	52	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	53	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	53	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	53	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	54	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	54	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	55	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	55	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	56	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	56	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	47	56	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	56	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	56	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	48	57	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	57	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	48	57	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	58	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	58	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	58	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	58	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	60	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	52	61	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	63	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	55	64	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	65	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	66	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	67	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	67	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	58	67	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	58	67	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	59	68	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	70	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	71	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	71	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	71	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	71	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	63	72	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	64	73	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	74	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	75	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	67	76	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	77	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	68	77	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	79	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	79	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	79	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	80	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	71	80	-	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	81	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	81	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	82	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	83	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	85	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	85	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	85	-	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	86	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	77	86	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	88	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	87	96	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	97	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	98	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	98	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	100	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	103	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	103	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	105	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	108	-	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	104	113	-	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	1	10	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	1	10	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	1	10	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	1	10	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	2	11	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	2	11	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	2	11	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	2	11	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	4	13	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	4	13	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	6	15	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	6	15	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	6	15	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	7	16	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	7	16	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	9	18	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	9	18	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	9	18	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	9	18	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	10	19	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	10	19	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	10	19	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	10	19	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	10	19	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	11	20	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	11	20	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	11	20	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	12	21	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	14	23	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	15	24	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	15	24	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	15	24	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	16	25	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	17	26	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	18	27	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	19	28	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	20	29	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	21	30	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	22	31	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	23	32	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	23	32	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	24	33	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	25	34	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	25	34	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	25	34	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	26	35	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	26	35	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	27	36	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	27	36	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	28	37	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	28	37	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	28	37	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	28	37	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	29	38	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	29	38	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	30	39	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	30	39	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	30	39	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	31	40	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	32	41	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	32	41	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	32	41	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	33	42	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	34	43	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	34	43	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	34	43	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	35	44	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	35	44	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	36	45	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	36	45	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	36	45	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	37	46	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	38	47	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	39	48	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	39	48	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	40	49	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	41	50	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	42	51	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	43	52	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	46	55	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	46	55	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	48	57	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	48	57	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	49	58	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	50	59	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	51	60	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	51	60	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	51	60	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	51	60	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	51	60	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	52	61	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	53	62	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	54	63	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	54	63	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	55	64	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	55	64	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	56	65	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	56	65	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	56	65	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	56	65	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	57	66	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	57	66	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	57	66	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	58	67	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	58	67	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	58	67	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	59	68	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	61	70	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	61	70	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	62	71	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	63	72	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	65	74	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	65	74	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	66	75	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	67	76	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	67	76	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	67	76	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	68	77	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	68	77	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	68	77	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	68	77	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	70	79	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	71	80	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	72	81	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	73	82	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	74	83	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	75	84	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	75	84	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	75	84	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	76	85	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	78	87	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	79	88	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	79	88	+	16.1837	3.29e-06	0.00384	TGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	79	88	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	79	88	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	81	90	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	84	93	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	86	95	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	87	96	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	88	97	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	88	97	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	93	102	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	101	110	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	102	111	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	102	111	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	102	111	+	16.1837	3.29e-06	0.00384	GGGGCGGGGC
INSM1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	46	57	+	15.7143	3.29e-06	0.102	GGTCAGGGGTCA
SP4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	22	38	+	13.3273	3.29e-06	0.00596	CCGGCCCCGCCCCAACC
SP4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	77	93	-	13.3273	3.29e-06	0.00596	CCGGCCCCGCCCCAACC
IRF1	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	46	66	-	15.2581	3.3e-06	0.0724	CTTCGCTTTCAGTTCCGCCTA
KLF13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	38	55	-	13.6034	3.3e-06	0.0601	CAGTAACGCCCCCTTCGG
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	38	55	-	13.6034	3.3e-06	0.0601	CAGTAACGCCCCCTTCGG
KLF13	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	60	77	+	13.6034	3.3e-06	0.0601	CAGTAACGCCCCCTTCGG
DUXA	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	32	44	+	15.0484	3.3e-06	1	CTGATCCAATCAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	7	27	+	14.9388	3.3e-06	0.0032	GGAGAAGCGGGCGCGGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	7	27	+	14.9388	3.3e-06	0.0032	GGAGAAGCGGGCGCGGGGAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	88	108	-	14.9388	3.3e-06	0.0032	GGAGAAGCGGGCGCGGGGAGG
YY1	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	29	40	+	15.7115	3.3e-06	0.0323	CAAAATGGCCGT
YY1	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	75	86	-	15.7115	3.3e-06	0.0323	CAAAATGGCCGT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	72	86	+	14.8429	3.3e-06	0.0759	GGTCCCCCGCCGTGC
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	6	19	-	12.9394	3.3e-06	0.379	CGCCCCCCAGGAAG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	6	19	-	12.9394	3.3e-06	0.379	CGCCCCCCAGGAAG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	6	19	-	12.9394	3.3e-06	0.379	CGCCCCCCAGGAAG
PITX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	52	60	-	12.8654	3.31e-06	0.8	CCTAATCCC
PITX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	52	60	-	12.8654	3.31e-06	0.8	CCTAATCCC
PITX3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	100	108	-	12.8654	3.31e-06	0.8	CCTAATCCC
PITX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	100	108	-	12.8654	3.31e-06	0.8	CCTAATCCC
ERG	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	15.0545	3.31e-06	0.0626	ACCGGAAGTA
Myc	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	98	107	-	15.3636	3.31e-06	0.189	CCATGTGCTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ERF	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.5714	3.31e-06	0.042	ACCGGAAGTC
ELK3	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.2241	3.31e-06	0.0454	ACCGGAAGTC
GSC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	51	60	-	13.566	3.31e-06	0.971	CCTAATCCCT
GSC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	51	60	-	13.566	3.31e-06	0.971	CCTAATCCCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	15.2115	3.31e-06	0.0647	ACCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	15.2115	3.31e-06	0.0647	ACCGGAAGTT
Myc	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	8	17	+	15.3636	3.31e-06	0.189	CCATGTGCTC
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	31	40	+	15.3636	3.31e-06	0.189	CCATGTGCTC
Myc	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	31	40	+	15.3636	3.31e-06	0.189	CCATGTGCTC
ELK1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	16.383	3.31e-06	0.0372	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.4545	3.31e-06	0.0567	ACCGGAAGCA
ERF	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.5714	3.31e-06	0.042	ACCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.5714	3.31e-06	0.042	ACCGGAAGTC
ELK3	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.2241	3.31e-06	0.0454	ACCGGAAGTC
ERG	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	15.0545	3.31e-06	0.0626	ACCGGAAGTA
ELK1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	16.383	3.31e-06	0.0372	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	16.383	3.31e-06	0.0372	ACCGGAAGTC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	-	14.7347	3.32e-06	0.0857	CCCCCCGGGGCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	9	25	+	13.3091	3.32e-06	0.00599	CTGGCCCCGCCCCGCCG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	27	44	-	15.3293	3.32e-06	0.0295	CTGCCGCCGATTGGCTGG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	27	44	-	15.3293	3.32e-06	0.0295	CTGCCGCCGATTGGCTGG
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	33	46	-	15.4615	3.32e-06	0.004	GTCCCTCCCCCACA
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	49	62	-	15.4615	3.32e-06	0.004	GTCCCTCCCCCACA
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	53	66	+	15.4615	3.32e-06	0.004	GTCCCTCCCCCACA
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	69	82	+	15.4615	3.32e-06	0.004	GTCCCTCCCCCACA
NRL	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	17	27	-	13.0192	3.32e-06	0.648	ATTCTGCTGAC
TFAP4	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	30	39	+	16.0545	3.32e-06	0.606	ATCAGCTGAT
TFAP4	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	30	39	-	16.0545	3.32e-06	0.606	ATCAGCTGAT
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	15	34	+	12.5505	3.32e-06	0.0258	CCTCACCACACCACCCCCAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	86	103	-	-0.0921053	3.32e-06	0.0162	GGCAGGGATCAAGGAAGT
Tcfl5	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	28	37	+	10.7661	3.32e-06	0.0189	GTCGCGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	28	37	-	10.7661	3.32e-06	0.0189	GGCGCGCGAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	87	96	+	10.7661	3.32e-06	0.0189	GGCGCGCGAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	87	96	-	10.7661	3.32e-06	0.0189	GTCGCGCGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	22	-	15.7705	3.32e-06	0.0537	CGCCCCCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	22	-	15.7705	3.32e-06	0.0537	CGCCCCCGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	51	+	15.7705	3.32e-06	0.0537	CGCCCCCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	51	+	15.7705	3.32e-06	0.0537	CGCCCCCGGGGCG
RFX2	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	+	13.9429	3.33e-06	0.0501	CATTGTCATGGAAACC
RFX2	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	-	13.9429	3.33e-06	0.0501	CATTGTCATGGAAACC
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	75	85	+	15.5345	3.33e-06	0.347	CAATCACAGCC
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	75	85	+	15.5345	3.33e-06	0.347	CAATCACAGCC
Mitf	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	55	-	12.8469	3.33e-06	0.0477	CGTCACGTGG
REL	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	49	58	+	14.3939	3.33e-06	0.11	GGGGGTTTCC
REL	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	85	94	+	14.3939	3.33e-06	0.11	GGGGGTTTCC
REL	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	21	30	-	14.3939	3.33e-06	0.11	GGGGGTTTCC
REL	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	57	66	-	14.3939	3.33e-06	0.11	GGGGGTTTCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	3	13	-	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	19	29	-	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	56	66	-	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	56	66	-	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	86	96	+	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	86	96	+	15.6545	3.33e-06	0.00357	GCGCCTGCCCA
RFX5	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	-	13.8966	3.33e-06	0.0444	AATTGCCATGGCAATG
RFX5	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	+	13.8966	3.33e-06	0.0444	AATTGCCATGGCAATG
Stat4	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	6	19	-	15.3103	3.33e-06	0.0809	GTTCTAGGAAACAG
SP3	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	54	64	-	14.7073	3.34e-06	0.00729	GCCACTCCCAC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	23	43	-	14.9184	3.34e-06	0.0032	GGAGGCGGAGCGAGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	23	43	-	14.9184	3.34e-06	0.0032	GGAGGCGGAGCGAGGGGGCGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	50	70	+	14.9184	3.34e-06	0.0032	GGAGGCCGGGAGGAGGGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	38	58	-	14.9184	3.34e-06	0.0032	TGGGGTGGGGGGAGTGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	40	60	-	14.9184	3.34e-06	0.0032	GGAGGCGGAGCGAGGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	40	60	-	14.9184	3.34e-06	0.0032	GGAGGCGGAGCGAGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	92	112	-	14.9184	3.34e-06	0.0032	GGGGGATGAAGTGGGGAAGTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	92	112	-	14.9184	3.34e-06	0.0032	GGGGGATGAAGTGGGGAAGTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	92	112	-	14.9184	3.34e-06	0.0032	GGGGGATGAAGTGGGGAAGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	92	112	-	14.9184	3.34e-06	0.0032	GGGGGATGAAGTGGGGAAGTG
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	57	68	+	15.6364	3.34e-06	0.0647	CCCCGTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	57	68	+	15.6364	3.34e-06	0.0647	CCCCGTCCGCGG
HINFP	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	47	58	-	15.6364	3.34e-06	0.0647	CCCCGTCCGCGG
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	96	109	-	15.25	3.34e-06	0.557	AGGACAGCTGTTAA
EGR3	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	32	46	-	14.5172	3.34e-06	0.0207	CTCCGCCCCCACACG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	25	37	+	15.1633	3.34e-06	0.0651	TCCAGCTGTCGCG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	26	38	-	15.1633	3.34e-06	0.0651	TCCAGCTGTCGCG
Myod1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	77	89	+	15.1633	3.34e-06	0.0651	TCCAGCTGTCGCG
Myod1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	78	90	-	15.1633	3.34e-06	0.0651	TCCAGCTGTCGCG
RXRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	60	-	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	60	-	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	60	-	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	92	-	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	23	36	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	23	36	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	23	36	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	23	36	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	23	36	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RXRB	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	55	68	+	11.0909	3.34e-06	0.139	AAGGTCGAAGTTCA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	81	100	+	12.5321	3.34e-06	0.0258	CCGCCACCCACCAGCTCCGG
KLF16	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	56	66	+	15.569	3.34e-06	0.00532	AACCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	49	59	-	15.569	3.34e-06	0.00532	AACCCGCCCCC
SPIC	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	68	81	-	15.1268	3.35e-06	0.0673	GGAAAGAGGAAGGA
TFAP2B	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	-	14.8545	3.35e-06	0.0893	CCCCCCGGGGCA
SP8	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	53	64	-	15.1974	3.35e-06	0.0123	GCCACTCCCACA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	-	14.7245	3.35e-06	0.0857	TCCCCTCGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	-	14.7245	3.35e-06	0.0857	TCCCCTCGGGCA
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	15.3818	3.35e-06	0.0969	CACACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	15.3818	3.35e-06	0.0969	CACACGTGCC
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	79	+	15.1967	3.35e-06	0.167	GTGACTCATCAGGTT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	30	40	-	15.7273	3.35e-06	0.065	AGTGAGTCATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	31	41	-	15.7273	3.35e-06	0.065	AGTGAGTCATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	66	76	+	15.7273	3.35e-06	0.065	AGTGAGTCATG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	13	31	-	14.8197	3.36e-06	0.0378	TCGCCAGCAGAGGTCGTAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	13	31	-	14.8197	3.36e-06	0.0378	TCGCCAGCAGAGGTCGTAA
NFIL3	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	45	55	-	15.2727	3.36e-06	1	TTATGTAACAC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	73	-	15.5091	3.36e-06	0.0507	GTCCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	73	-	15.5091	3.36e-06	0.0507	GTCCCGGAAGTC
TBP	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	48	62	+	13.8611	3.36e-06	0.17	GTATATAAGGGCCGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	26	40	-	15.4655	3.36e-06	0.00206	GCCCCACCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	26	40	-	15.4655	3.36e-06	0.00206	GCCCCACCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	26	40	-	15.4655	3.36e-06	0.00206	GCCCCACCCCGGCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	30	44	-	15.4655	3.36e-06	0.00206	GCACCGCCCCCTCAC
SP2	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	37	51	-	15.4655	3.36e-06	0.00206	CCCCCGCCCCCGGAT
SP2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	81	95	-	15.4655	3.36e-06	0.00206	GCCCCGCCCCACATC
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	26	42	-	13.2727	3.36e-06	0.00605	CGGGCCCCGCCCCCGGA
MYF6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	+	16.3788	3.36e-06	1	AACAGCTGTC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	80	93	+	15.4808	3.36e-06	0.118	GAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	80	93	+	15.4808	3.36e-06	0.118	GAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	47	-	15.4808	3.36e-06	0.118	GAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	47	-	15.4808	3.36e-06	0.118	GAAGGATGAGTCAC
SP1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	16	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	26	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	26	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	43	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	43	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	24	34	-	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	24	34	-	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	26	36	-	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	32	42	-	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	43	53	-	15.5769	3.36e-06	0.00255	TCCCCACCCCC
SP1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	83	+	15.5769	3.36e-06	0.00255	TCCCCACCCCC
Hoxd8	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	75	91	-	14.7738	3.36e-06	1	TTGTCAATTAATGGCAC
Zfx	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	28	41	+	15.5455	3.37e-06	0.0111	GTCGGCGGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	52	65	-	15.5455	3.37e-06	0.0111	GCTGCCCAGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	52	65	-	15.5455	3.37e-06	0.0111	GCTGCCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	52	65	-	15.5455	3.37e-06	0.0111	GCTGCCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	52	65	-	15.5455	3.37e-06	0.0111	GCTGCCCAGGCCTC
Zfx	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	74	87	-	15.5455	3.37e-06	0.0111	GTCGGCGGGGCCTC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	93	106	+	15.5455	3.37e-06	0.0111	CGCAGCGGGGCCTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	64	81	-	-0.144737	3.37e-06	0.0163	GCGAGGCAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	64	81	-	-0.144737	3.37e-06	0.0163	GCGAGGCAGGAAGGAGGG
SPDEF	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	18	-	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	24	-	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	24	-	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	24	-	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	51	-	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	61	71	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	61	71	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	64	74	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	91	101	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	97	107	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	97	107	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	97	107	+	15.8545	3.37e-06	0.14	TCCCGGATGTG
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	39	+	15.1429	3.37e-06	0.0573	GACAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	24	34	-	15.1429	3.37e-06	0.0573	GACAGCTGGCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	38	57	-	12.5138	3.37e-06	0.0258	ACTCCCCTCACCCCCTCCCC
FOXC2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	18	29	+	14.3762	3.37e-06	0.528	TGAGTAAACAAA
FOXC2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	80	91	+	14.3762	3.37e-06	0.528	TGAGTAAACAAA
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	24	35	-	14.3762	3.37e-06	0.528	TGAGTAAACAAA
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	24	35	-	14.3762	3.37e-06	0.528	TGAGTAAACAAA
FOXC2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	86	97	-	14.3762	3.37e-06	0.528	TGAGTAAACAAA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	61	74	-	15.4423	3.38e-06	0.00403	CACCCACCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	46	+	15.4423	3.38e-06	0.00403	TCCCCGCCCCCAGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	46	+	15.4423	3.38e-06	0.00403	TCCCCGCCCCCAGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	46	+	15.4423	3.38e-06	0.00403	TCCCCGCCCCCAGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	46	+	15.4423	3.38e-06	0.00403	TCCCCGCCCCCAGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	46	+	15.4423	3.38e-06	0.00403	TCCCCGCCCCCAGA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	44	57	+	15.4423	3.38e-06	0.00403	CACCCACCCCCACG
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	96	109	-	15.1935	3.38e-06	0.129	TTTCCTAGAATGAC
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	62	77	-	15.6585	3.38e-06	0.428	GGTTATGCAAATGACG
MEF2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	69	83	-	15.322	3.38e-06	0.462	TGCCCAAAAATAGAC
MEF2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	69	83	-	15.322	3.38e-06	0.462	TGCCCAAAAATAGAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	1	21	+	14.898	3.38e-06	0.00324	AAAGGAGAAGAGGAGTGGAGG
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	32	+	15.102	3.38e-06	0.0657	GGTGACGTCACA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	94	-	15.102	3.38e-06	0.0657	GGTGACGTCACA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	+	16.449	3.39e-06	0.14	AATGACTCATT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	+	16.449	3.39e-06	0.14	AATGACTCATT
NFE2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	+	16.449	3.39e-06	0.14	AATGACTCATT
NFE2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	-	16.449	3.39e-06	0.14	AATGACTCATT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	-	16.449	3.39e-06	0.14	AATGACTCATT
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	-	16.449	3.39e-06	0.14	AATGACTCATT
RORA(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	49	62	+	16.3708	3.39e-06	0.464	TATAAATAGGTCAG
RORA(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	53	66	-	16.3708	3.39e-06	0.464	TATAAATAGGTCAG
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	73	83	+	15.9636	3.39e-06	0.148	TTTCCAGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	73	83	+	15.9636	3.39e-06	0.148	TTTCCAGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	73	83	+	15.9636	3.39e-06	0.148	TTTCCAGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	73	83	+	15.9636	3.39e-06	0.148	TTTCCAGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	73	83	+	15.9636	3.39e-06	0.148	TTTCCAGGAAT
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	47	+	15.5172	3.4e-06	0.235	GGCTTCCGGAGAACC
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	47	+	15.5172	3.4e-06	0.235	GGCTTCCGGAGAACC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	47	+	15.5172	3.4e-06	0.235	GGCTTCCGGAGAACC
Stat6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	47	+	15.5172	3.4e-06	0.235	GGCTTCCGGAGAACC
Stat6	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	42	56	-	15.5172	3.4e-06	0.235	GTTTTCCTCAGAAGA
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	40	-	15.6364	3.41e-06	0.0675	TGATGACTCAT
Rfx1	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	41	54	+	15.3103	3.41e-06	0.05	GTGGCCCTGGAAAC
Rfx1	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	61	74	-	15.3103	3.41e-06	0.05	GTGGCCCTGGAAAC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	42	+	15.4483	3.41e-06	0.00208	GCTCCGCCCACCGCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	42	+	15.4483	3.41e-06	0.00208	GCTCCGCCCACCGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	73	87	-	15.4483	3.41e-06	0.00208	GCTCCGCCCACCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	89	103	-	15.4483	3.41e-06	0.00208	GCTCCGCCTCCGCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	89	103	-	15.4483	3.41e-06	0.00208	GCTCCGCCTCCGCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	89	103	-	15.4483	3.41e-06	0.00208	GCTCCGCCTCCGCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	89	103	-	15.4483	3.41e-06	0.00208	GCTCCGCCTCCGCGT
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	+	15.0364	3.42e-06	0.0397	AGCCCCAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	-	15.0364	3.42e-06	0.0397	AGCCCCAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	-	15.0364	3.42e-06	0.0397	AGCCCCAGGCT
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	37	48	-	14.8	3.42e-06	0.535	GTTATGCAAATG
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	37	48	-	14.8	3.42e-06	0.535	GTTATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	37	48	-	14.8	3.42e-06	0.535	GTTATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	37	48	-	14.8	3.42e-06	0.535	GTTATGCAAATG
POU2F1	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	67	78	+	14.8	3.42e-06	0.535	GTTATGCAAATG
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	65	76	-	14.8	3.42e-06	0.535	GTTATGCAAATG
CTCF	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	22	40	-	14.7869	3.42e-06	0.0378	CCCCCAGGAGGAGGCGCTG
CTCF	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	75	93	+	14.7869	3.42e-06	0.0378	CCCCCAGGAGGAGGCGCTG
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	-	14.5319	3.42e-06	0.341	AAGGACAAACTGTTCCA
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	-	14.5319	3.42e-06	0.341	AAGGACAAACTGTTCCA
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	+	14.5319	3.42e-06	0.341	AAGGACAAACTGTTCCA
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	+	14.5319	3.42e-06	0.341	AAGGACAAACTGTTCCA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	70	80	+	15.4426	3.42e-06	0.018	CCGGAAGCGCA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	-	16.0213	3.42e-06	0.105	TGTGAGTCATC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	-	16.0213	3.42e-06	0.105	TGTGAGTCATC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	-	16.0213	3.42e-06	0.105	TGTGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	-	16.0213	3.42e-06	0.105	TGTGAGTCATC
USF1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	29	-	15.4694	3.43e-06	0.0533	GACACGTGACC
USF1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	49	-	15.4694	3.43e-06	0.0533	GACACGTGACC
USF1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	76	+	15.4694	3.43e-06	0.0533	GACACGTGACC
USF1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	96	+	15.4694	3.43e-06	0.0533	GACACGTGACC
IRF7	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	11	24	-	15.2258	3.43e-06	0.341	GTGAAAGCGAAAGT
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	23	36	-	15.2258	3.43e-06	0.341	GTGAAAGCGAAAGT
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	23	36	-	15.2258	3.43e-06	0.341	GTGAAAGCGAAAGT
NFYB	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	5	19	+	15.6538	3.43e-06	0.0551	CGCTCCACCAATCAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	24	40	+	13.2182	3.43e-06	0.00612	CCAGCCCCGCCCTCACA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	24	40	+	13.2182	3.43e-06	0.00612	CCAGCCCCGCCCTCACA
SP4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	11	27	-	13.2182	3.43e-06	0.00612	CCGGCCCCGCCCCTGAC
SP4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	88	104	+	13.2182	3.43e-06	0.00612	CCGGCCCCGCCCCTGAC
KLF14	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	19	32	+	15.3793	3.44e-06	0.0115	GACCACGCCCACGG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	37	47	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	37	47	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	37	47	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	37	47	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	66	76	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	66	76	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	66	76	+	15.5345	3.44e-06	0.00538	CACCCGCCCCC
E2F4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	54	64	+	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	51	61	-	15.5862	3.44e-06	0.0186	GCGCGGGAAGA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	52	67	+	15.1636	3.44e-06	0.0258	TCCCGCCCACGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	52	67	+	15.1636	3.44e-06	0.0258	TCCCGCCCACGCCGGC
HOXA10	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	86	+	13.2075	3.44e-06	1	GGTCATAAAAA
HOXA10	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	86	+	13.2075	3.44e-06	1	GGTCATAAAAA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	82	100	-	15.1774	3.44e-06	0.101	CCGCGCAGCCGGCCGGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	82	100	-	15.1774	3.44e-06	0.101	CCGCGCAGCCGGCCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	82	100	-	15.1774	3.44e-06	0.101	CCGCGCAGCCGGCCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	82	100	-	15.1774	3.44e-06	0.101	CCGCGCAGCCGGCCGGGGC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	12	26	+	15.5152	3.45e-06	0.0805	ACGGTTTCAGTTCCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	86	100	-	15.5152	3.45e-06	0.0805	ACGGTTTCAGTTCCT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	9	22	-	15.5152	3.45e-06	0.0111	AGGGCCGGGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	9	22	-	15.5152	3.45e-06	0.0111	AGGGCCGGGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	9	22	-	15.5152	3.45e-06	0.0111	AGGGCCGGGGCCTA
Zfx	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	17	30	-	15.5152	3.45e-06	0.0111	CGCGCTCGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	85	98	+	15.5152	3.45e-06	0.0111	CGCGCTCGGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	93	106	+	15.5152	3.45e-06	0.0111	AGGGCCGGGGCCTA
SP3	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	32	42	+	14.6992	3.45e-06	0.0075	GCCACGCCTCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	73	83	-	14.6992	3.45e-06	0.0075	GCCACGCCTCC
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	4	14	-	15.4808	3.45e-06	0.172	AAAATGAGTCA
SP2	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	35	49	+	15.431	3.45e-06	0.0021	GCTCCTCCCCCGCGC
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	10	21	-	15.4677	3.45e-06	0.447	GTATGCAAATGA
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	11	22	-	15.4677	3.45e-06	0.447	GTATGCAAATGA
NR1H2::RXRA	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	23	39	-	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	76	92	+	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
NR1H2::RXRA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	76	92	+	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	76	92	+	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	76	92	+	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
NR1H2::RXRA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	76	92	+	6.03371	3.46e-06	0.147	CAGGGTCACAGGCCAAT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	5	19	+	15.1311	3.46e-06	0.167	ATGAGTCAGCATGAG
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	5	19	+	15.1311	3.46e-06	0.167	ATGAGTCAGCATGAG
Arntl	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	28	+	14.7377	3.46e-06	0.102	GGTCACGTGT
Arntl	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	48	+	14.7377	3.46e-06	0.102	GGTCACGTGT
Arntl	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	67	76	-	14.7377	3.46e-06	0.102	GGTCACGTGT
Arntl	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	87	96	-	14.7377	3.46e-06	0.102	GGTCACGTGT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	14.0606	3.46e-06	0.247	AACACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	14.0606	3.46e-06	0.247	AACACGTGCC
Klf1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	28	38	+	15.5909	3.46e-06	0.0344	GGCCACACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	78	88	+	15.5909	3.46e-06	0.0344	GGCCACACCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	43	53	-	15.5909	3.46e-06	0.0344	GGCCACACCCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	20	30	-	15.6	3.47e-06	0.00362	ACGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	62	72	-	15.6	3.47e-06	0.00362	ACGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	62	72	-	15.6	3.47e-06	0.00362	ACGCATGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:75994650..75994764,+__758.1.0.0	63	73	-	15.6	3.47e-06	0.00362	ACGCATGCGCG
Rarb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	15	30	-	7.58621	3.47e-06	0.742	AGAGGCCAAGAGGGCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	8	28	+	14.8571	3.47e-06	0.00331	GAGGGAGGAAAGGTGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	10	30	+	14.8571	3.47e-06	0.00331	AGAGAACGGGGGCGGGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	39	59	-	14.8571	3.47e-06	0.00331	GAGGGAGGGGCGGGCGGGCGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	52	72	-	14.8571	3.47e-06	0.00331	GGAGGAGGAGTAACTTGGAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	74	94	-	14.8571	3.47e-06	0.00331	GAAGCACTGTGGGGAGGAGGG
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	-	14.2041	3.47e-06	0.481	AAGGACAAACTGTTCCA
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	-	14.2041	3.47e-06	0.481	AAGGACAAACTGTTCCA
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	+	14.2041	3.47e-06	0.481	AAGGACAAACTGTTCCA
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	+	14.2041	3.47e-06	0.481	AAGGACAAACTGTTCCA
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	+	14.4894	3.48e-06	0.341	TGGAACAGTTTGTCCTT
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	+	14.4894	3.48e-06	0.341	TGGAACAGTTTGTCCTT
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	-	14.4894	3.48e-06	0.341	TGGAACAGTTTGTCCTT
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	-	14.4894	3.48e-06	0.341	TGGAACAGTTTGTCCTT
ETV2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	55	65	+	15.9508	3.48e-06	0.118	AACCGGAAGCA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	60	-	15.9508	3.48e-06	0.118	AACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	60	-	15.9508	3.48e-06	0.118	AACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	60	-	15.9508	3.48e-06	0.118	AACCGGAAGCA
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	60	-	15.9508	3.48e-06	0.118	AACCGGAAGCA
EGR4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	22	37	+	15.1455	3.48e-06	0.0258	CTCCGCCCCCGCCTGC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	53	68	+	15.1455	3.48e-06	0.0258	CTCCGCCCCCGCCTGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	53	68	+	15.1455	3.48e-06	0.0258	CTCCGCCCCCGCCTGC
EGR4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	78	93	-	15.1455	3.48e-06	0.0258	CTCCGCCCCCGCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	21	37	+	13.1818	3.48e-06	0.00617	CTCGCCCCGCCCTCCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	21	37	+	13.1818	3.48e-06	0.00617	CTCGCCCCGCCCTCCCT
HEY2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	15.4483	3.48e-06	0.112	GGCACGTGCG
HEY2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	15.4483	3.48e-06	0.112	GGCACGTGCG
HEY2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	15.4483	3.48e-06	0.112	GGCACGTGCG
HEY2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	15.4483	3.48e-06	0.112	GGCACGTGCG
ELK4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	34	44	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	37	-	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	58	68	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	58	68	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	63	-	15.2364	3.48e-06	0.0226	CCACTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	63	-	15.2364	3.48e-06	0.0226	CCACTTCCGGA
ELK4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	78	88	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	78	88	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	78	88	+	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	81	-	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	81	-	15.2364	3.48e-06	0.0226	CTACTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	85	-	15.2364	3.48e-06	0.0226	CCACTTCCGGA
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	90	+	15.1224	3.48e-06	0.0573	GGCAGCTGCGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	17	30	+	15.3448	3.48e-06	0.0115	GGCCCCGCCCACAA
E2F7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	87	100	+	8.29508	3.48e-06	0.765	CTTTCCCGCCCAAA
ELF1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	26	37	+	15.4909	3.48e-06	0.0507	ATACCGGAAGTG
ELF1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	48	59	+	15.4909	3.48e-06	0.0507	ATACCGGAAGTG
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	18	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	18	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	32	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	32	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	32	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	32	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	38	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	33	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	33	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	33	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	33	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	39	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	86	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	92	+	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	87	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	93	-	15.602	3.49e-06	0.149	GGCCACGTGGC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	107	-	15.602	3.49e-06	0.149	GGCCACGTGGC
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	60	72	+	15.1429	3.49e-06	0.0651	CCCAGCTGCTGCC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	60	72	+	15.1429	3.49e-06	0.0651	CCCAGCTGCTGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	54	67	-	15.4038	3.49e-06	0.00415	GAACCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	54	67	-	15.4038	3.49e-06	0.00415	GAACCGCCCCCTCC
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	-	14.7818	3.49e-06	0.054	TGCCCTAGGGCT
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	+	14.7818	3.49e-06	0.054	TGCCCTAGGGCT
NR2C2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	16	-	15.2143	3.49e-06	0.0701	AGGGGTGAAGGGCCA
NR2C2	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	48	62	+	15.2143	3.49e-06	0.0701	AGGGGTGAAGGGCCA
NR2C2	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	67	-	15.2143	3.49e-06	0.0701	AGGGGTGAAGGGCCA
NR2C2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	99	113	+	15.2143	3.49e-06	0.0701	AGGGGTGAAGGGCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	22	36	-	15.4138	3.49e-06	0.00212	GCCCCACCCCTCCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	22	36	-	15.4138	3.49e-06	0.00212	GCCCCACCCCTCCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	22	36	-	15.4138	3.49e-06	0.00212	GCCCCACCCCTCCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	22	36	-	15.4138	3.49e-06	0.00212	GCCCCACCCCTCCAG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	34	44	+	15.5345	3.49e-06	0.022	AGGCGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	34	44	+	15.5345	3.49e-06	0.022	AGGCGGGAGAG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	78	92	+	15.2692	3.49e-06	0.235	CCAGTGCAAAGTGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	78	92	+	15.2692	3.49e-06	0.235	CCAGTGCAAAGTGCA
NFYA	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	78	95	-	15.2439	3.49e-06	0.0295	CGCCTTATGATTGGTCCC
NFYA	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	20	37	+	15.2439	3.49e-06	0.0295	CGCCTTATGATTGGTCCC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	82	+	15.0816	3.5e-06	0.0657	GATGACGTCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	82	+	15.0816	3.5e-06	0.0657	GATGACGTCAGA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	38	52	+	14.7763	3.5e-06	0.0875	TGCATGAGTCAGCCC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	20	34	-	14.7763	3.5e-06	0.0875	TGCATGAGTCAGCCC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	-	15.5082	3.5e-06	0.039	AGCCCGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	-	15.5082	3.5e-06	0.039	AGCCCGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	-	15.5082	3.5e-06	0.039	AGCCCGCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	-	15.5082	3.5e-06	0.039	AGCCCGCGGGGCG
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	33	44	-	15.1447	3.5e-06	0.0124	GCCCCCCCCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	3	12	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	10	19	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	31	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	26	35	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	26	35	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	26	35	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	20	29	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	23	32	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	24	33	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	58	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	59	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	53	62	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	53	62	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	53	62	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	53	62	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	53	62	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	56	65	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	91	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	80	89	-	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	96	105	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	103	112	+	15.3878	3.5e-06	0.0039	GCCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	27	41	-	15.0164	3.5e-06	0.027	GGCCCCGCCCTGCTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	27	41	-	15.0164	3.5e-06	0.027	GGCCCCGCCCTGCTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	27	41	-	15.0164	3.5e-06	0.027	GGCCCCGCCCTGCTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	27	41	-	15.0164	3.5e-06	0.027	GGCCCCGCCCTGCTC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	4	21	-	-0.302632	3.5e-06	0.0165	GGAGGGAAAGAAGAAGGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	27	44	+	-0.302632	3.5e-06	0.0165	GGAGGGAAAGAAGAAGGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	71	88	-	-0.302632	3.5e-06	0.0165	GGAGGGAAAGAAGAAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	94	111	+	-0.302632	3.5e-06	0.0165	GGAGGGAAAGAAGAAGGG
RFX3	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	-	15	3.51e-06	0.045	AGTCGCCACGGCAACC
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	50	70	+	14.8367	3.52e-06	0.00334	AGAGAAAGGGGAAGGGGAGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	52	72	+	14.8367	3.52e-06	0.00334	GAAGCAGGAAGGAACTGAGAA
ZNF143	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	17	32	+	12.0345	3.52e-06	0.231	GTCCCAGAGTGCCCCG
ZNF143	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	83	98	-	12.0345	3.52e-06	0.231	GTCCCAGAGTGCCCCG
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	100	110	-	15.2245	3.53e-06	0.219	ATTTCCTAGAA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	+	15.6552	3.53e-06	0.0375	CGCCCCGAGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	+	15.6552	3.53e-06	0.0375	CGCCCCGAGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	-	15.6552	3.53e-06	0.0375	CGCCCCGAGGGCC
HES5	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	70	-	13.8103	3.53e-06	0.162	AGCCACGTGCCT
Zfx	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	20	33	-	15.4848	3.53e-06	0.0111	CGGGTCCCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	39	52	+	15.4848	3.53e-06	0.0111	ACGGGCTGGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	50	63	+	15.4848	3.53e-06	0.0111	CGGGTCCCGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	52	65	-	15.4848	3.53e-06	0.0111	CGGGTCCCGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	82	95	+	15.4848	3.53e-06	0.0111	CGGGTCCCGGCCTG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	42	59	+	-0.328947	3.53e-06	0.0166	GGGAGGGAAGAAGAAAGG
SPDEF	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	17	27	+	15.8182	3.53e-06	0.14	AGCCGGATGTG
SPDEF	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	33	-	15.8182	3.53e-06	0.14	AGCCGGATGTG
SPDEF	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	82	92	+	15.8182	3.53e-06	0.14	AGCCGGATGTG
SPDEF	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	98	-	15.8182	3.53e-06	0.14	AGCCGGATGTG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	66	79	+	15.3846	3.54e-06	0.00419	CACCCGCCCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	66	79	+	15.3846	3.54e-06	0.00419	CACCCGCCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	66	79	+	15.3846	3.54e-06	0.00419	CACCCGCCCCCTTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	66	80	-	15	3.54e-06	0.027	TGCCACGCCCCCCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	66	80	-	15	3.54e-06	0.027	TGCCACGCCCCCCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	5	19	+	15	3.54e-06	0.027	TGCCACGCCCCCCCG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	41	55	+	15	3.54e-06	0.027	TGCCACGCCCCCCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	41	55	+	15	3.54e-06	0.027	TGCCACGCCCCCCCG
NFYB	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	6	20	+	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	92	106	+	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	9	23	-	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	9	23	-	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	9	23	-	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	9	23	-	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
NFYB	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	95	109	-	15.6154	3.54e-06	0.0551	AAACCAACCAATCAA
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	+	13.8	3.54e-06	0.0525	TGTTGTCATAGCAATG
E2F3	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	62	79	-	13.0545	3.54e-06	1	GAAAAAAGCGCCAGTTTT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	16	+	15.3966	3.55e-06	0.00214	GCCCCTCCCCTCGGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	16	+	15.3966	3.55e-06	0.00214	GCCCCTCCCCTCGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	16	+	15.3966	3.55e-06	0.00214	GCCCCTCCCCTCGGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	52	66	+	15.3966	3.55e-06	0.00214	CTCCCACCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	70	+	15.3966	3.55e-06	0.00214	GCCCCTCCCCTCGGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	70	+	15.3966	3.55e-06	0.00214	GCCCCTCCCCTCGGT
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	14	32	-	14.7213	3.55e-06	0.0382	GGGCCGGGAGGGGGAGCCG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	14	32	-	14.7213	3.55e-06	0.0382	GGGCCGGGAGGGGGAGCCG
ZIC1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	17	30	-	14.0851	3.55e-06	0.0778	CGCCCCCTGCCGAG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	+	15.6721	3.55e-06	0.0537	GGCCCCGAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	+	15.6721	3.55e-06	0.0537	GGCCCCGAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	+	15.6721	3.55e-06	0.0537	GGCCCCGAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	+	15.6721	3.55e-06	0.0537	GGCCCCGAGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	+	15.6721	3.55e-06	0.0537	GGCCCCGAGGGCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	6	19	-	15.3103	3.56e-06	0.0115	AAGCACGCCCCCTC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	35	48	-	15.3103	3.56e-06	0.0115	AGCCCCGCCCCTTC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	37	54	-	-0.355263	3.56e-06	0.0166	GGAGGGAACGAAGGAGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	9	19	+	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	9	19	+	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Gabpa	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	61	71	+	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	44	54	-	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	44	54	-	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Gabpa	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	96	106	-	15.3934	3.56e-06	0.018	CCGGAAGCGAG
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	1	10	+	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	1	10	+	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	12	+	14.623	3.56e-06	0.126	TATGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	75	+	14.623	3.56e-06	0.126	TATGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	74	83	+	14.623	3.56e-06	0.126	TATGACGTCA
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	15.5758	3.56e-06	1	AACATATGCC
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	15.5758	3.56e-06	1	AACATATGCC
Crem	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	32	41	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	40	49	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	40	49	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	45	54	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	45	54	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	45	54	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	103	112	-	14.623	3.56e-06	0.126	TATGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	105	114	-	14.623	3.56e-06	0.126	TATGACGTCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	5	16	+	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	5	16	+	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP8	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	57	68	+	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	47	58	-	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	47	58	-	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP8	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	99	110	-	15.1316	3.56e-06	0.0124	CCCACGCCCCTT
SP3	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	45	+	14.6829	3.56e-06	0.00772	ACCCCGCCCAC
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	63	76	-	13.8163	3.56e-06	0.0582	GAGGCCTACTGGGA
Klf12	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	69	83	-	14.9836	3.57e-06	0.027	GGCCACGCCCCGGCG
Klf12	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	32	46	+	14.9836	3.57e-06	0.027	GGCCACGCCCCGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	26	46	+	14.8163	3.57e-06	0.00337	GGAAGGGGAGGGGGGGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	26	46	+	14.8163	3.57e-06	0.00337	GGAAGGGGAGGGGGGGGGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	6	26	-	14.8163	3.57e-06	0.00337	GGGGAAGGGAAGGAGGTGGGG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	81	92	+	15.4262	3.57e-06	0.0463	ACACCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	81	92	+	15.4262	3.57e-06	0.0463	ACACCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	81	92	+	15.4262	3.57e-06	0.0463	ACACCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	81	92	+	15.4262	3.57e-06	0.0463	ACACCGGAAGTG
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	95	108	-	15.2586	3.57e-06	0.0514	GGGGCCATGGCGAC
ELF1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	43	-	15.4364	3.57e-06	0.0507	GCCCCGGAAGTA
Nfe2l2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	88	102	+	15.2424	3.57e-06	0.143	TAGAGTGACTCAGCC
Nfe2l2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	14	28	-	15.2424	3.57e-06	0.143	TAGAGTGACTCAGCC
Nfe2l2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	14	28	-	15.2424	3.57e-06	0.143	TAGAGTGACTCAGCC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	-	15.6557	3.57e-06	0.0537	CCCCCCCGGGGCA
PAX5	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	63	81	-	15.129	3.57e-06	0.101	AGGGGCGGCCAGGCGAAGC
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	15	31	-	13.1091	3.57e-06	0.00628	CTATCCCCGCCCCTTCC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	41	57	-	13.1091	3.57e-06	0.00628	CTATCCCCGCCCCTTCC
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	58	74	+	13.1091	3.57e-06	0.00628	CTATCCCCGCCCCTTCC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	84	100	+	13.1091	3.57e-06	0.00628	CTATCCCCGCCCCTTCC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	27	40	-	15.0563	3.58e-06	0.0673	CAAAACAGGAAGGA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	27	40	-	15.0563	3.58e-06	0.0673	CAAAACAGGAAGGA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	55	68	+	15.0563	3.58e-06	0.0673	CAAAACAGGAAGGA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	55	68	+	15.0563	3.58e-06	0.0673	CAAAACAGGAAGGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	8	20	-	15.1724	3.58e-06	0.0804	CACCCGGAAATGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	8	20	-	15.1724	3.58e-06	0.0804	CACCCGGAAATGA
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	60	-	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	60	-	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	60	-	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	92	-	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	23	36	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	23	36	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	23	36	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	23	36	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	23	36	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
RXRG	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	55	68	+	11.6596	3.58e-06	0.15	AAGGTCGAAGTTCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	29	42	-	15.3654	3.58e-06	0.00422	CCCCCACCTCCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	60	73	-	15.3654	3.58e-06	0.00422	CGCCCTCCCCCACG
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	94	107	+	15.3654	3.58e-06	0.00422	GCGCCGCCTCCGCT
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	29	43	-	14.3793	3.59e-06	0.0208	GCCCGCCCACGTACC
EGR3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	83	97	-	14.3793	3.59e-06	0.0208	GCCCGCCCACGTACC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	18	32	+	14.3793	3.59e-06	0.0208	GCCCGCCCACGTACC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	48	62	-	15.4091	3.59e-06	0.0264	GTCTCGCGATGCTAG
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	5	19	+	15.4091	3.59e-06	0.0264	GTCTCGCGATGCTAG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	53	67	+	15.4091	3.59e-06	0.0264	GTCTCGCGATGCTAG
NHLH1	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	+	15.3966	3.59e-06	0.0674	AGCAGCTGCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	-	15.3966	3.59e-06	0.0674	AGCAGCTGCT
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	5	14	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	6	15	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	7	16	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	4	13	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	22	31	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	28	37	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	45	54	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	40	49	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	40	49	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	48	57	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	58	67	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	78	87	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	84	93	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	102	111	+	13.3737	3.59e-06	0.0542	GGAGGGGGGA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	99	108	-	13.3737	3.59e-06	0.0542	GGAGGGGGGA
SP1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	2	12	-	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	19	29	+	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	32	+	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	25	35	+	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	19	29	-	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	22	32	-	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	23	33	-	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	30	40	-	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	37	47	-	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	59	+	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	60	+	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	44	54	-	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	55	65	-	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	58	68	-	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	75	85	+	15.5577	3.59e-06	0.00268	TCTCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	92	+	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	103	113	+	15.5577	3.59e-06	0.00268	GCCCCTCCCTC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	34	43	-	15.4312	3.59e-06	0.0162	TCCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	52	61	+	15.4312	3.59e-06	0.0162	TCCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	52	61	+	15.4312	3.59e-06	0.0162	TCCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	52	61	+	15.4312	3.59e-06	0.0162	TCCCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	72	81	+	15.4312	3.59e-06	0.0162	TCCCCCCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	21	+	15.3793	3.59e-06	0.00217	GACCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	21	+	15.3793	3.59e-06	0.00217	GACCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	70	84	-	15.3793	3.59e-06	0.00217	CCCCCGCCTCCCCTA
USF1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	24	+	15.3673	3.6e-06	0.0533	GCCACGTGACA
KLF14	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	4	17	-	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	29	42	+	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	29	42	+	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	29	42	+	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	29	42	+	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	51	64	+	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	51	64	-	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	51	64	-	15.2931	3.6e-06	0.0115	GGCCCCGCCCCCAG
FOXP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	63	73	-	15.0455	3.6e-06	0.569	ATGTAAACAGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	81	100	-	12.3486	3.6e-06	0.0263	AAACCAAACAACAAACCAAC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	108	+	15.102	3.6e-06	0.0832	GGCAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	108	+	15.102	3.6e-06	0.0832	GGCAGCTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	108	+	15.102	3.6e-06	0.0832	GGCAGCTGCAG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	108	+	15.102	3.6e-06	0.0832	GGCAGCTGCAG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	+	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	-	14.9818	3.6e-06	0.0397	CGCCCGAGGCG
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	64	74	+	15.4848	3.6e-06	0.0344	TGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	64	74	+	15.4848	3.6e-06	0.0344	TGCCCCACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	22	32	-	15.4848	3.6e-06	0.0344	TGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	34	44	-	15.4848	3.6e-06	0.0344	TGCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	34	44	-	15.4848	3.6e-06	0.0344	TGCCCCACCCA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	-	15.6364	3.6e-06	0.0675	GATGACTCATC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	71	84	-	12.6364	3.6e-06	0.079	GAAATGAGGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	71	84	-	12.6364	3.6e-06	0.079	GAAATGAGGAAGCA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	56	68	+	15.1552	3.6e-06	0.0804	ATCCCGGAAGTTG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	56	68	+	15.1552	3.6e-06	0.0804	ATCCCGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	56	68	+	15.1552	3.6e-06	0.0804	ATCCCGGAAGTTG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	56	68	+	15.1552	3.6e-06	0.0804	ATCCCGGAAGTTG
KLF13	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	68	85	-	13.3793	3.6e-06	0.0601	AGGCCACGCCTCCTCCTT
KLF13	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	30	47	+	13.3793	3.6e-06	0.0601	AGGCCACGCCTCCTCCTT
EHF	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	46	-	15.5082	3.6e-06	0.0691	GAACCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	56	67	+	15.5082	3.6e-06	0.0691	ATCCCGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	56	67	+	15.5082	3.6e-06	0.0691	ATCCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	56	67	+	15.5082	3.6e-06	0.0691	ATCCCGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	56	67	+	15.5082	3.6e-06	0.0691	ATCCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	69	80	+	15.5082	3.6e-06	0.0691	GAACCGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	69	80	+	15.5082	3.6e-06	0.0691	GAACCGGAAGTA
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	-	14.9545	3.61e-06	0.045	GGATTCCATGGTAACC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	-	14.9545	3.61e-06	0.045	GGATTCCATGGTAACC
RREB1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	8	27	-	12.3394	3.61e-06	0.0263	CCACCCACCATCCCCCACAT
RREB1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	88	107	+	12.3394	3.61e-06	0.0263	CCACCCACCATCCCCCACAT
MEF2D	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	13	24	+	15.0545	3.61e-06	0.189	CCTAAAAATAGC
MEF2D	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	91	102	-	15.0545	3.61e-06	0.189	CCTAAAAATAGC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	70	80	+	15.5818	3.61e-06	0.00362	GCGGATGCGCA
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	7	21	+	14.7105	3.61e-06	0.0875	CCAGTGACTCAGCTC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	7	27	+	14.7959	3.61e-06	0.00339	TGGGGAAGGGGTGGGGGATGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	28	48	+	14.7959	3.61e-06	0.00339	AGGGGCGGAGGCGCGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	28	48	+	14.7959	3.61e-06	0.00339	AGGGGCGGAGGCGCGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	44	64	+	14.7959	3.61e-06	0.00339	GGGGGAGGGGACGCTGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	44	64	+	14.7959	3.61e-06	0.00339	GGGGGAGGGGACGCTGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	74	94	+	14.7959	3.61e-06	0.00339	GGAGGAGGGGACTCCGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	57	77	-	14.7959	3.61e-06	0.00339	GGGGGAGGGGACGCTGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	57	77	-	14.7959	3.61e-06	0.00339	GGGGGAGGGGACGCTGGGAAG
ELF5	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	6	16	+	14.1273	3.62e-06	0.0786	ACCAGGAAGTT
ELF5	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	60	70	+	14.1273	3.62e-06	0.0786	ACCAGGAAGTT
ELF5	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	64	74	+	14.1273	3.62e-06	0.0786	ACACGGAAGTA
ELF5	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	41	51	-	14.1273	3.62e-06	0.0786	ACACGGAAGTA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	28	41	-	15.5571	3.62e-06	0.0727	TCATGACGTCACGA
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	28	41	-	15.5571	3.62e-06	0.0727	TCATGACGTCACGA
Esrra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	67	77	-	15.2182	3.62e-06	0.862	GTGAAGGTCAT
EGR4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	36	51	-	15.0909	3.62e-06	0.0258	CCCCGCCCCCGCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	44	59	-	15.0909	3.62e-06	0.0258	CTCCGCCCACCCCCCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	80	99	+	12.3303	3.62e-06	0.0263	CCACACCCCGCCCGCTCACC
ETV6	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	15.4231	3.63e-06	0.0363	AGCGGAAGTA
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	40	52	-	12.1429	3.63e-06	0.226	AGGGGCTCCCCCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	14	27	-	15.3462	3.63e-06	0.00424	GCCACGCCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	26	39	-	15.3462	3.63e-06	0.00424	ACTCCGCCCCCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	26	39	-	15.3462	3.63e-06	0.00424	ACTCCGCCCCCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	48	61	-	15.3462	3.63e-06	0.00424	ACTCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	48	61	-	15.3462	3.63e-06	0.00424	ACTCCGCCCCCACG
EGR1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	55	+	15.3462	3.63e-06	0.00424	GCTCCGCCCACGTC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	59	+	15.3462	3.63e-06	0.00424	GCCACGCCCACACC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	21	34	+	15.2759	3.63e-06	0.0115	GTCCACGCCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	21	34	+	15.2759	3.63e-06	0.0115	GTCCACGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	21	34	+	15.2759	3.63e-06	0.0115	GTCCACGCCCACCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	21	34	+	15.2759	3.63e-06	0.0115	GTCCACGCCCACCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	3	22	-	12.3211	3.63e-06	0.0263	CACCCCCCCCCCCCCTCCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	3	22	-	12.3211	3.63e-06	0.0263	CACCCCCCCCCCCCCTCCCG
SP2	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	54	+	15.3621	3.64e-06	0.00219	CCCCCGCCCCCAACT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	3	16	+	13.7551	3.64e-06	0.0582	GGGGGGTTAAGGGG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	39	49	-	15.8727	3.64e-06	0.148	CTTCTGGGAAA
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	39	49	-	15.8727	3.64e-06	0.148	CTTCTGGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	39	49	-	15.8727	3.64e-06	0.148	CTTCTGGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	39	49	-	15.8727	3.64e-06	0.148	CTTCTGGGAAA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	21	32	+	15.0204	3.65e-06	0.0659	GCTGACGTCACA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	21	32	+	15.0204	3.65e-06	0.0659	GCTGACGTCACA
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	11	25	+	15.3333	3.65e-06	0.567	CTGACTCAGCACCTT
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	11	25	+	15.3333	3.65e-06	0.567	CTGACTCAGCACCTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	52	66	+	14.3448	3.65e-06	0.0208	TCCCGCCCACGCCGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	52	66	+	14.3448	3.65e-06	0.0208	TCCCGCCCACGCCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	26	42	-	13.0545	3.65e-06	0.00635	CTGACTCCGCCCCCACG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	26	42	-	13.0545	3.65e-06	0.00635	CTGACTCCGCCCCCACG
Myog	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	75	+	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	93	+	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	84	94	-	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	84	94	-	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	84	94	-	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	84	94	-	15.102	3.65e-06	0.0573	AGCAGCTGCAG
Myog	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	108	+	15.102	3.65e-06	0.0573	AGCAGCTGCAG
ELF3	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	15	27	-	15.0862	3.65e-06	0.0804	GAGCCGGAAGTGC
Nr5a2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	27	41	-	15.4483	3.65e-06	0.225	GTTGTCAAGGCCAGG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	28	42	+	15.1286	3.66e-06	0.0701	GGAGGGGAGGGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	28	42	+	15.1286	3.66e-06	0.0701	GGAGGGGAGGGGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	27	47	+	14.7755	3.66e-06	0.00341	GAAGGGGAGGGGGGGGGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	27	47	+	14.7755	3.66e-06	0.00341	GAAGGGGAGGGGGGGGGAGAA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	9	29	-	14.7755	3.66e-06	0.00341	GAGGGAGCGCGCGGGGAGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	17	37	-	14.7755	3.66e-06	0.00341	TGGGCCGGAGGGGGAGGGGGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	86	106	+	14.7755	3.66e-06	0.00341	GAGGGAGCGCGCGGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	93	113	+	14.7755	3.66e-06	0.00341	GGAAGAGTCAGGGGAGAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	93	113	+	14.7755	3.66e-06	0.00341	GGAAGAGTCAGGGGAGAAGGA
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	27	40	-	15.2414	3.66e-06	0.835	TATATGCAAATCAA
E2F4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	44	54	-	15.5172	3.66e-06	0.0186	GCGCGGGAAGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	61	71	+	15.5172	3.66e-06	0.0186	GCGCGGGAAGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	61	71	+	15.5172	3.66e-06	0.0186	GCGCGGGAAGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	61	71	+	15.5172	3.66e-06	0.0186	GCGCGGGAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	61	71	+	15.5172	3.66e-06	0.0186	GCGCGGGAAGC
ZNF143	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	89	104	+	11.9138	3.66e-06	0.231	CACCCACCATCCCCCA
ZNF143	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	11	26	-	11.9138	3.66e-06	0.231	CACCCACCATCCCCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	3	18	-	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	3	18	-	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	20	35	+	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	20	35	+	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	20	35	+	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	20	35	+	15.0727	3.67e-06	0.0258	CCCCGCCCCCGCCCCG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	63	73	-	15.2653	3.67e-06	0.12	GTTCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	63	73	-	15.2653	3.67e-06	0.12	GTTCTGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	63	73	-	15.2653	3.67e-06	0.12	GTTCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	63	73	-	15.2653	3.67e-06	0.12	GTTCTGGGAAG
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	16	25	-	15.1311	3.67e-06	0.391	TCAACTGTCA
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	16	25	-	15.1311	3.67e-06	0.391	TCAACTGTCA
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	89	98	+	15.1311	3.67e-06	0.391	TCAACTGTCA
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	89	98	+	15.1311	3.67e-06	0.391	TCAACTGTCA
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	14.7576	3.67e-06	0.131	GTCACGTGAC
MLX	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	15.9286	3.67e-06	0.151	GTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	15.9286	3.67e-06	0.151	GTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	14.0854	3.67e-06	0.129	GTCACGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	14.0854	3.67e-06	0.129	GTCACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	16.4655	3.67e-06	0.133	GTCACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	16.4655	3.67e-06	0.133	GTCACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	16.3636	3.67e-06	0.137	GTCACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	16.3636	3.67e-06	0.137	GTCACGTGAT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	20	-	15.4182	3.67e-06	0.0507	CACCCGGAAATG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	20	-	15.4182	3.67e-06	0.0507	CACCCGGAAATG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	46	59	-	15.3269	3.67e-06	0.00429	CCCCCGCCTCCGGG
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	83	95	+	14.9672	3.68e-06	0.673	ATTCAACAAGTGC
Bcl6	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	5	18	+	15.0968	3.68e-06	0.129	TTTCCTGGAGGGGA
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	15	32	-	15.1585	3.68e-06	0.0295	CGAGTTGCGATTGGCCCG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	15	32	-	15.1585	3.68e-06	0.0295	CGAGTTGCGATTGGCCCG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	15	32	-	15.1585	3.68e-06	0.0295	CGAGTTGCGATTGGCCCG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	54	71	-	15.1585	3.68e-06	0.0295	GGCATTGTGATTGGCCCA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	54	71	-	15.1585	3.68e-06	0.0295	GGCATTGTGATTGGCCCA
NFYA	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	44	61	+	15.1585	3.68e-06	0.0295	GGCATTGTGATTGGCCCA
NFYA	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	83	100	+	15.1585	3.68e-06	0.0295	CGAGTTGCGATTGGCCCG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	84	98	+	14.7387	3.68e-06	0.124	TTGGGGCAGGGGCCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	53	67	+	15.3448	3.68e-06	0.00221	TTCCCGCCCCGCCGC
HOXD12	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	55	65	+	15.4262	3.68e-06	0.549	CGTCGTAAAAA
HOXD12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	60	-	15.4262	3.68e-06	0.549	CGTCGTAAAAA
HOXD12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	60	-	15.4262	3.68e-06	0.549	CGTCGTAAAAA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	69	-	15.8197	3.68e-06	0.118	GACCGGAAGTA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	69	-	15.8197	3.68e-06	0.118	GACCGGAAGTA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	89	-	15.8197	3.68e-06	0.118	GACCGGAAGTA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	89	-	15.8197	3.68e-06	0.118	GACCGGAAGTA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	+	14.8269	3.68e-06	0.0521	AGCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	-	14.8269	3.68e-06	0.0521	AGCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	-	14.8269	3.68e-06	0.0521	AGCCCCAGGCT
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	39	50	+	14.7636	3.69e-06	0.054	AGCCCTAGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	65	76	-	14.7636	3.69e-06	0.054	AGCCCTAGGGCA
ZBTB7C	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	10	21	+	14.5323	3.69e-06	0.281	GCGACCCCCAAA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	94	105	-	14.5323	3.69e-06	0.281	GCGACCCCCAAA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	94	105	-	14.5323	3.69e-06	0.281	GCGACCCCCAAA
TP53	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	+	13.6939	3.69e-06	0.335	GTCATGCTCGCACATGTG
KLF16	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	54	64	+	15.4138	3.69e-06	0.00577	GACCCGCCCAC
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	95	111	+	15.1327	3.69e-06	0.338	AGGGCATGGAAAGGACA
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	60	70	+	15.5612	3.69e-06	0.149	AAGCACGTGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	60	70	+	15.5612	3.69e-06	0.149	AAGCACGTGGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	20	33	-	15.2414	3.69e-06	0.0115	CGCCCCGCCCCCAT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	20	33	-	15.2414	3.69e-06	0.0115	CGCCCCGCCCCCAT
MEF2B	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	13	24	+	15.4182	3.7e-06	0.193	CCTAAAAATAGC
MEF2B	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	91	102	-	15.4182	3.7e-06	0.193	CCTAAAAATAGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	5	21	-	13.0182	3.7e-06	0.00635	CCCGCCCCGCCCCTCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	53	69	+	13.0182	3.7e-06	0.00635	CAGGCCCCGCCCCGAGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	53	69	+	13.0182	3.7e-06	0.00635	CAGGCCCCGCCCCGAGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	53	69	+	13.0182	3.7e-06	0.00635	CAGGCCCCGCCCCGAGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	53	69	+	13.0182	3.7e-06	0.00635	CAGGCCCCGCCCCGAGT
Zfx	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	11	24	-	15.4394	3.7e-06	0.0115	CTCGCTGGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	36	49	-	15.4394	3.7e-06	0.0115	CTCGCTGGGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	66	79	+	15.4394	3.7e-06	0.0115	CTCGCTGGGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	91	104	+	15.4394	3.7e-06	0.0115	CTCGCTGGGGCCTG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	5	15	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	5	15	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	9	19	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	12	22	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	4	14	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	4	14	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	4	14	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	4	14	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	8	18	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	10	20	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	22	32	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	22	32	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	33	43	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	33	43	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	33	43	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	33	43	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	33	43	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	28	38	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	28	38	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	40	50	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	43	53	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	43	53	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	43	53	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	43	53	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	57	67	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	48	58	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	65	75	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	83	93	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	95	105	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	97	107	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	99	109	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	99	109	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	99	109	+	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	93	103	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	100	110	-	15.5636	3.7e-06	0.00362	GCGCACGCGCG
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	64	81	-	13.3103	3.7e-06	0.0601	CTGCCACGCCCCCCCGCC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	64	81	-	13.3103	3.7e-06	0.0601	CTGCCACGCCCCCCCGCC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	4	21	+	13.3103	3.7e-06	0.0601	CTGCCACGCCCCCCCGCC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	40	57	+	13.3103	3.7e-06	0.0601	CTGCCACGCCCCCCCGCC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	40	57	+	13.3103	3.7e-06	0.0601	CTGCCACGCCCCCCCGCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	36	50	+	14.3103	3.7e-06	0.0208	CGCCGCCCCCGCGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	11	31	+	14.7551	3.71e-06	0.00343	GAGGAAGGGGGAAGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	11	31	+	14.7551	3.71e-06	0.00343	GAGGAAGGGGGAAGGGGGCGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	11	31	+	14.7551	3.71e-06	0.00343	GAGGAAGGGGGAAGGGGGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr3:94656976..94657090,+__594.1.0.0	12	32	-	14.7551	3.71e-06	0.00343	CAAGCAGGAGGAAGAAAAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	39	59	-	14.7551	3.71e-06	0.00343	GGGGGAGGAGGGAGGAAGTCA
CTCF	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	75	93	+	14.6393	3.71e-06	0.0393	GGAGCAGAAGGGGGCAGCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	24	39	-	15.0545	3.71e-06	0.0258	CCCCGCCCCCGCGCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	24	39	-	15.0545	3.71e-06	0.0258	CCCCGCCCCCGCGCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	52	67	-	15.0545	3.71e-06	0.0258	CTGCGCCCACCCACTA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	52	67	-	15.0545	3.71e-06	0.0258	CTGCGCCCACCCACTA
EHF	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	91	102	+	15.4426	3.72e-06	0.0691	AAGGCGGAAGTA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	16	29	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	17	30	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	54	67	+	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	48	61	-	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
KLF14	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	86	99	+	15.2241	3.73e-06	0.0115	AGCCCCGCCCCCCG
SP2	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	29	+	15.3276	3.73e-06	0.00223	GTCCCGCCCCTCATT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	21	35	+	15.3276	3.73e-06	0.00223	GACCCGCCCCCGACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	21	35	+	15.3276	3.73e-06	0.00223	GACCCGCCCCCGACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	48	+	15.3276	3.73e-06	0.00223	CCCCCGCCCCGTCTC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	48	+	15.3276	3.73e-06	0.00223	CCCCCGCCCCGTCTC
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	26	40	-	15.3276	3.73e-06	0.00223	CCCCCACCCCTCCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	31	45	-	15.3276	3.73e-06	0.00223	CCCCCGCCCCGTCTC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	31	45	-	15.3276	3.73e-06	0.00223	CCCCCGCCCCGTCTC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	89	+	15.3276	3.73e-06	0.00223	CCCCCACCCCTCCGC
T	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	45	60	+	14.5	3.73e-06	0.786	TCGCACGCATGCGTGA
T	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	55	70	-	14.5	3.73e-06	0.786	TCGCACGCATGCGTGA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	22	39	-	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	22	39	-	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	22	39	-	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	22	39	-	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	86	103	-	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	12	29	+	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
NFYA	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	76	93	+	15.1341	3.73e-06	0.0295	ATGCCTCTCATTGGCTCC
ESR1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	97	113	-	10.5909	3.73e-06	0.264	CATGTCGCCGCGACCTA
ESR1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	2	18	+	10.5909	3.73e-06	0.264	CATGTCGCCGCGACCTA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	11	-	15.1636	3.73e-06	0.023	GGACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	11	-	15.1636	3.73e-06	0.023	GGACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	69	79	+	15.1636	3.73e-06	0.023	GGACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	69	79	+	15.1636	3.73e-06	0.023	GGACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	69	79	+	15.1636	3.73e-06	0.023	GGACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	69	79	+	15.1636	3.73e-06	0.023	GGACTTCCGGC
NFYB	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	30	44	-	15.5577	3.74e-06	0.0551	CTTCTGGCCAATCAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	14	31	+	-0.565789	3.74e-06	0.017	AGGAGAAAGGAAGGGAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	17	34	-	-0.565789	3.74e-06	0.017	AGGAGAAAGGAAGGGAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	81	98	+	-0.565789	3.74e-06	0.017	AGGAGAAAGGAAGGGAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	84	101	-	-0.565789	3.74e-06	0.017	AGGAGAAAGGAAGGGAGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	52	66	+	15.1455	3.74e-06	0.0875	TCCCGCCCGCGGCGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	5	15	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	5	15	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	5	15	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	5	15	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	5	15	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	14	24	-	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	18	28	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	18	28	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	49	59	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	49	59	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	58	68	-	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	84	94	-	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	84	94	-	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	84	94	-	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	84	94	-	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	21	31	+	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	42	52	+	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	47	57	+	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	47	57	+	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	52	62	+	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	92	102	+	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	92	102	+	15.5	3.74e-06	0.022	AGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	96	106	+	15.5	3.74e-06	0.022	GGGCGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	96	106	+	15.5	3.74e-06	0.022	GGGCGGGAGGT
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	18	-	15.1	3.75e-06	0.0701	GGGTGTCAGAGGTTA
TBX19	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	30	49	+	14.878	3.75e-06	0.415	TATGACATTTAGATGTCAAA
TBX19	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	66	85	-	14.878	3.75e-06	0.415	TATGACATTTAGATGTCAAA
TBX19	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	66	85	-	14.878	3.75e-06	0.415	TATGACATTTAGATGTCAAA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	38	47	+	11.6643	3.75e-06	0.0721	CGCACGCGTC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	38	47	+	11.6643	3.75e-06	0.0721	CGCACGCGTC
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	58	67	-	11.6643	3.75e-06	0.0721	CGCACGCGTC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	58	67	-	11.6643	3.75e-06	0.0721	CGCACGCGTC
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	58	67	-	11.6643	3.75e-06	0.0721	CGCACGCGTC
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	45	62	+	15.122	3.76e-06	0.0295	CGGGAGCTCATTGGCTGC
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	45	62	+	15.122	3.76e-06	0.0295	CGGGAGCTCATTGGCTGC
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	45	62	+	15.122	3.76e-06	0.0295	CGGGAGCTCATTGGCTGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	24	44	-	14.7347	3.76e-06	0.00347	GGAGGAGGCGGGGGCGGGCCA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	24	44	-	14.7347	3.76e-06	0.00347	GGAGGAGGCGGGGGCGGGCCA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	7	17	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	7	17	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	8	18	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	24	34	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	62	72	+	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	67	77	+	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	81	91	+	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	83	93	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	83	93	-	15.5	3.76e-06	0.0186	CGGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	98	108	+	15.5	3.76e-06	0.0186	CGGCGGGAGGG
SREBF2	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	36	45	+	15.5393	3.76e-06	0.871	CTGGGGTGAT
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	9	18	-	15.8878	3.76e-06	0.15	GGGACTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	9	18	-	15.8878	3.76e-06	0.15	GGGACTTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	29	38	+	15.8878	3.76e-06	0.15	GGGACTTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	32	41	-	15.8878	3.76e-06	0.15	GGGACTTTCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	13.898	3.76e-06	0.0421	CTCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	13.898	3.76e-06	0.0421	CTCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	13.898	3.76e-06	0.0421	CTCACGTGAC
TFE3	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	13.898	3.76e-06	0.0421	CTCACGTGAC
TFE3	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	13.898	3.76e-06	0.0421	CTCACGTGAC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	13.5636	3.76e-06	0.0501	ACCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	13.5636	3.76e-06	0.0501	ACCGGAAGTC
Zfx	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	85	98	-	15.4242	3.76e-06	0.0115	CCCACCTCGGCCTC
Zfx	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	85	98	-	15.4242	3.76e-06	0.0115	CCCACCTCGGCCTC
RFX3	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	+	14.8788	3.76e-06	0.045	CGTTGCCACGGAGACC
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	38	54	-	15.102	3.77e-06	0.338	AGGTCAAAGGAAGGGGA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	27	41	+	14.2759	3.77e-06	0.0208	CCACGCCCCCGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	27	41	+	14.2759	3.77e-06	0.0208	CCACGCCCCCGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	27	41	+	14.2759	3.77e-06	0.0208	CCACGCCCCCGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	27	41	+	14.2759	3.77e-06	0.0208	CCACGCCCCCGCCGG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	5	15	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	5	15	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	5	15	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	5	15	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	5	15	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	22	+	14.6585	3.77e-06	0.00774	GCCACGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	22	+	14.6585	3.77e-06	0.00774	GCCACGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	12	22	+	14.6585	3.77e-06	0.00774	GCCACGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	27	37	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	43	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	73	83	+	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	29	39	-	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	32	42	-	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	72	82	-	14.6585	3.77e-06	0.00774	GCCACGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	78	88	-	14.6585	3.77e-06	0.00774	GCCACGCCCCG
Tcf12	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	75	+	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	93	+	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	84	94	-	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	84	94	-	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	84	94	-	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	84	94	-	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	108	+	15.0816	3.77e-06	0.0832	AGCAGCTGCAG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	22	36	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	22	36	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	22	36	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	22	36	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	22	36	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	54	68	+	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	61	-	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	61	-	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	61	-	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
NR2C2	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	93	-	15.0857	3.77e-06	0.0701	AAAGGTCGAAGTTCA
Klf1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	52	62	+	15.4545	3.77e-06	0.0344	GGACACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	17	27	-	15.4545	3.77e-06	0.0344	GGACACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	17	27	-	15.4545	3.77e-06	0.0344	GGACACACCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	53	63	-	15.4545	3.77e-06	0.0344	GGACACACCCA
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	55	68	-	14.7541	3.77e-06	0.176	GACCCCCCGCCGTC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	55	68	-	14.7541	3.77e-06	0.176	GACCCCCCGCCGTC
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	60	-	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	60	-	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	60	-	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	92	-	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	23	36	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	23	36	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	23	36	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	23	36	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	23	36	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
Rxra	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	55	68	+	11.7073	3.77e-06	0.127	AAGGTCGAAGTTCA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	92	103	+	15.4848	3.77e-06	0.0707	CTGCGTCCGCGT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	+	15.6182	3.77e-06	0.0675	GGTGACTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	+	15.6182	3.77e-06	0.0675	GGTGACTCACG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	-	15.6182	3.77e-06	0.0675	GGTGACTCACG
SP2	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	6	20	-	15.3103	3.77e-06	0.00223	TCCCCTCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	39	+	15.3103	3.77e-06	0.00223	GCCCCTCCCCTTTTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	39	+	15.3103	3.77e-06	0.00223	GCCCCTCCCCTTTTC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	45	+	15.3103	3.77e-06	0.00223	GCCCTGCCCCCACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	45	+	15.3103	3.77e-06	0.00223	GCCCTGCCCCCACCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	55	+	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	55	+	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	29	43	-	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	29	43	-	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	30	44	-	15.3103	3.77e-06	0.00223	TGCCCGCCCCCGGGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	45	59	+	15.3103	3.77e-06	0.00223	GCCCCGCCCTGGCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	59	73	+	15.3103	3.77e-06	0.00223	TGCCCGCCCCCGGGG
SP2	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	86	+	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	60	74	-	15.3103	3.77e-06	0.00223	CCCCCTCCCCCTCGT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	100	114	-	15.3103	3.77e-06	0.00223	GCCCCACCCCCAGCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	100	114	-	15.3103	3.77e-06	0.00223	GCCCCACCCCCAGCT
Hoxa11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	87	+	14.4677	3.77e-06	0.71	GGTCATAAAAAT
Hoxa11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	87	+	14.4677	3.77e-06	0.71	GGTCATAAAAAT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	-	15.4098	3.78e-06	0.039	CGCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	-	15.4098	3.78e-06	0.039	CGCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	-	15.4098	3.78e-06	0.039	CGCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	-	15.4098	3.78e-06	0.039	CGCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	-	15.4098	3.78e-06	0.039	CGCCCTCGGGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	-	15.4098	3.78e-06	0.039	TGCCCCGGAGGGA
NRF1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	7	17	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	6	16	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	8	18	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	45	55	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	45	55	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	46	56	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	46	56	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	46	56	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	46	56	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	40	50	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	44	54	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	45	55	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	45	55	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	45	55	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	45	55	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	56	66	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	49	59	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	50	60	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	60	70	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	65	75	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	59	69	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	99	109	+	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	98	108	-	15.5455	3.78e-06	0.00362	GCGCCGGCGCC
Bcl6	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	80	93	+	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	92	105	+	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	10	23	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	10	23	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	10	23	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	10	23	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	22	35	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	22	35	-	15.0645	3.78e-06	0.129	GTTCCTGGACTGCA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	41	58	-	-0.618421	3.78e-06	0.0171	GGGGAGGAGGGAGGAAGT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	50	64	-	15.3333	3.78e-06	0.0267	GTCTCGCGGTGGCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	51	65	+	15.3333	3.78e-06	0.0267	GTCTCGCGGTGGCTC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	51	65	+	15.3333	3.78e-06	0.0267	GTCTCGCGGTGGCTC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	51	65	+	15.3333	3.78e-06	0.0267	GTCTCGCGGTGGCTC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	-	15.3617	3.79e-06	0.12	TGTGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	-	15.3617	3.79e-06	0.12	TGTGAGTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	-	15.3617	3.79e-06	0.12	TGTGAGTCATC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	-	15.3617	3.79e-06	0.12	TGTGAGTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	+	15.3617	3.79e-06	0.12	GCTGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	+	15.3617	3.79e-06	0.12	GCTGAGTCATC
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	67	81	+	14.9672	3.79e-06	0.167	GTGACTCAGCGTTGC
BHLHE41	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	16.3077	3.79e-06	0.0509	GTCACGTGCC
BHLHE41	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	16.3077	3.79e-06	0.0509	GTCACGTGCC
Klf12	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	31	45	-	14.8525	3.8e-06	0.0271	GGCCCCGCCCAGATC
Klf12	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	70	84	+	14.8525	3.8e-06	0.0271	GGCCCCGCCCAGATC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	71	87	-	12.9455	3.8e-06	0.00635	CCAGCCCCGCCTCCCCT
ELF1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	73	84	+	15.4	3.8e-06	0.0507	GATCCGGAAGTG
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	15.1212	3.8e-06	1	AACATATGCT
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	15.1212	3.8e-06	1	AACATATGCT
BHLHE22	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	15.1212	3.8e-06	1	AACATATGCT
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	10	24	-	15.5385	3.8e-06	0.0551	AAACAGACCAATCGG
KLF16	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	41	51	+	15.3966	3.8e-06	0.00593	CCCACTCCCCC
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	31	45	+	15.0714	3.8e-06	0.0701	CGGGGTGGGGGGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	44	64	-	14.7143	3.81e-06	0.00349	GGGAGAGGGGTGGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	44	64	-	14.7143	3.81e-06	0.00349	GGGAGAGGGGTGGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	55	75	-	14.7143	3.81e-06	0.00349	GAGGGCGGGGCTGAAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	55	75	-	14.7143	3.81e-06	0.00349	GAGGGCGGGGCTGAAGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	55	75	-	14.7143	3.81e-06	0.00349	GAGGGCGGGGCTGAAGGAGGA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	47	61	-	15.5745	3.81e-06	0.254	GGTGATGACGCCATC
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	47	61	-	15.5745	3.81e-06	0.254	GGTGATGACGCCATC
SP1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	10	20	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	11	21	-	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	35	+	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	35	+	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	36	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	40	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	24	34	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	25	35	-	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	25	35	-	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	29	39	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	29	39	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	30	40	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	30	40	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	39	49	-	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	68	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	68	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	76	+	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	90	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	79	89	-	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	104	+	15.5192	3.82e-06	0.00279	ACCCCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	105	+	15.5192	3.82e-06	0.00279	CCCCCTCCCCT
SP2	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	13	27	+	15.2931	3.82e-06	0.00225	GCCCCGCCCCCAAAT
SP2	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	88	102	-	15.2931	3.82e-06	0.00225	GCCCCGCCCCCAAAT
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	26	39	+	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	26	39	+	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	57	70	+	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	45	58	-	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	45	58	-	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	76	89	-	13.9362	3.82e-06	0.0778	CCCCTCCCGCTGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	+	15.5738	3.82e-06	0.0537	CGCCCCGAGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	+	15.5738	3.82e-06	0.0537	CGCCCCGAGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	-	15.5738	3.82e-06	0.0537	CGCCCCGAGGGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	11	27	-	12.9273	3.83e-06	0.00635	CCGACCACGCCCCTAGA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	11	27	-	12.9273	3.83e-06	0.00635	CCGACCACGCCCCTAGA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	11	27	-	12.9273	3.83e-06	0.00635	CCGACCACGCCCCTAGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	11	27	-	12.9273	3.83e-06	0.00635	CCGACCACGCCCCTAGA
SP4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	88	104	+	12.9273	3.83e-06	0.00635	CCGACCACGCCCCTAGA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	3	17	-	14.2414	3.83e-06	0.0208	CCCCGCCCCCTCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	3	17	-	14.2414	3.83e-06	0.0208	CCCCGCCCCCTCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	51	65	-	14.2414	3.83e-06	0.0208	CCCCGCCCCCTCATC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	51	65	-	14.2414	3.83e-06	0.0208	CCCCGCCCCCTCATC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	74	88	-	14.2414	3.83e-06	0.0208	GAACTCCCACGCACG
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	32	-	14.9796	3.83e-06	0.0666	TGTGACGTCACC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	94	+	14.9796	3.83e-06	0.0666	TGTGACGTCACC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	+	14.9455	3.83e-06	0.0397	TGCCCCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	+	14.9455	3.83e-06	0.0397	TGCCCCAGGCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	-	14.9455	3.83e-06	0.0397	TGCCCCAGGCG
LBX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	11.6949	3.83e-06	0.895	GCCAATTAGG
MSC	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	-	15.5122	3.83e-06	0.569	AACAGCTGCT
MSC	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	+	15.5122	3.83e-06	0.569	AACAGCTGCT
MSC	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	-	15.5122	3.83e-06	0.569	AACAGCTGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	51	61	+	15.3115	3.84e-06	0.018	GCGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	51	61	+	15.3115	3.84e-06	0.018	GCGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	61	71	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	61	71	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	61	71	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	61	71	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	61	71	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	89	99	+	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	16	26	-	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	44	54	-	15.3115	3.84e-06	0.018	GCGGAAGTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	46	56	-	15.3115	3.84e-06	0.018	GCGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	46	56	-	15.3115	3.84e-06	0.018	GCGGAAGTGGG
E2F6	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	49	59	-	15.4138	3.84e-06	0.022	GGGCGGGAGCC
E2F6	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	56	66	+	15.4138	3.84e-06	0.022	GGGCGGGAGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	1	14	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	1	14	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	18	31	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	18	31	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	18	31	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	18	31	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	28	41	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	28	41	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	47	60	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	50	63	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	50	63	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	62	75	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	62	75	+	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	52	65	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	64	77	-	15.1724	3.84e-06	0.0115	GGCCCCGCCCCCGC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	4	21	+	15.0854	3.84e-06	0.0299	CCAGTTCCGATTGGTCTG
PKNOX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	+	11.9592	3.84e-06	0.428	TGACAGCTGGCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	+	11.9592	3.84e-06	0.428	TGACAGCTGGCA
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	28	41	+	15.3286	3.85e-06	0.196	GTGCCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	28	41	+	15.3286	3.85e-06	0.196	GTGCCACGTGACCC
TCF4	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	5	14	+	14.3878	3.85e-06	0.207	CGCACCTGGT
TCF4	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	101	110	-	14.3878	3.85e-06	0.207	CGCACCTGGT
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	1	14	+	10.6182	3.85e-06	0.141	GGGGTCAGGGGTGA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	1	14	+	10.6182	3.85e-06	0.141	GGGGTCAGGGGTGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	1	17	+	12.9091	3.85e-06	0.00635	CTGGCCCCGCCCCAGGT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	1	17	+	12.9091	3.85e-06	0.00635	CTGGCCCCGCCCCAGGT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	3	19	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	3	19	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	3	19	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	3	19	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	3	19	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	2	18	-	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	2	18	-	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	2	18	-	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	2	18	-	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	97	113	+	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	96	112	-	12.9091	3.85e-06	0.00635	GAGGCTCCGCCCCCGAC
SP4	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	98	114	-	12.9091	3.85e-06	0.00635	CTGGCCCCGCCCCAGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	21	41	+	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	21	41	+	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	45	65	+	14.6939	3.86e-06	0.00351	GGAGGAGAAAGAAGAGGGCCA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	52	72	+	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	43	63	-	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	43	63	-	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	74	94	-	14.6939	3.86e-06	0.00351	CGGAGAGGACGAGGGGGAGGG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	35	45	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	35	45	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	35	45	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	40	50	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	40	50	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	52	62	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	53	63	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	55	65	-	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	65	75	-	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	65	75	-	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	101	111	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	101	111	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	101	111	+	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	94	104	-	15.5273	3.86e-06	0.00362	GCGCGGGCGCG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	60	71	+	15.3443	3.86e-06	0.0492	CATCCGGAAGTG
FOSL2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	90	100	+	15.6182	3.86e-06	0.0675	GAGTGACTCAG
FOSL2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	16	26	-	15.6182	3.86e-06	0.0675	GAGTGACTCAG
FOSL2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	16	26	-	15.6182	3.86e-06	0.0675	GAGTGACTCAG
YY1	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	85	96	+	15.4231	3.86e-06	0.0374	CAACATGGCCGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	7	20	-	15.2692	3.86e-06	0.00435	CCACCTCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	36	49	+	15.2692	3.86e-06	0.00435	CCGCCGCCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	36	49	+	15.2692	3.86e-06	0.00435	CCGCCGCCGCCGCT
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	81	97	+	10.4697	3.87e-06	0.264	GATGTCAGGATAACCTT
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	81	97	+	10.4697	3.87e-06	0.264	GATGTCAGGATAACCTT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	5	15	+	15.1273	3.87e-06	0.023	CCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	5	15	+	15.1273	3.87e-06	0.023	CCACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	47	57	+	15.1273	3.87e-06	0.023	CCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	47	57	+	15.1273	3.87e-06	0.023	CCACTTCCGCC
ELK4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	67	-	15.1273	3.87e-06	0.023	CCACTTCCGCC
ELK4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	110	-	15.1273	3.87e-06	0.023	CCACTTCCGCC
Rfx1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	88	101	+	15.1207	3.87e-06	0.0526	GTTTCCAAGGCGAC
Rfx1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	14	27	-	15.1207	3.87e-06	0.0526	GTTTCCAAGGCGAC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	64	78	+	14.5286	3.88e-06	0.0815	TGCCACCTGCTGGGC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	92	106	+	14.5286	3.88e-06	0.0815	TGCCACCTGCTGGGC
Foxa2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	45	56	-	14.99	3.88e-06	0.439	TGTTGACTCTGG
KLF13	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	3	20	+	13.1897	3.88e-06	0.0601	AGGCCACGCCTCTTATGC
KLF13	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	95	112	-	13.1897	3.88e-06	0.0601	AGGCCACGCCTCTTATGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	44	58	-	15.3621	3.89e-06	0.225	GAGATCAAGGTCGGC
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	44	58	-	15.3621	3.89e-06	0.225	GAGATCAAGGTCGGC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	38	56	+	14.5574	3.89e-06	0.0393	CGGCCGCCAGGGGTCCCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	38	56	+	14.5574	3.89e-06	0.0393	CGGCCGCCAGGGGTCCCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	38	56	+	14.5574	3.89e-06	0.0393	CGGCCGCCAGGGGTCCCCG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	38	56	+	14.5574	3.89e-06	0.0393	CGGCCGCCAGGGGTCCCCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	-	15.3455	3.89e-06	0.0519	AGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	-	15.3455	3.89e-06	0.0519	AGCCCGAGGCG
NFIA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	64	73	+	13.5111	3.89e-06	0.595	AGTGCCAAGT
NFIA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	64	73	+	13.5111	3.89e-06	0.595	AGTGCCAAGT
NFIA	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	42	51	-	13.5111	3.89e-06	0.595	AGTGCCAAGT
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	25	-	15.551	3.9e-06	0.149	AACCACGTGGA
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	90	100	+	15.551	3.9e-06	0.149	AACCACGTGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	21	41	-	14.6735	3.91e-06	0.00353	GGAGGCGGGGCTGCGGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	25	45	-	14.6735	3.91e-06	0.00353	TGGTGTGGAGGAGGAGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	74	94	+	14.6735	3.91e-06	0.00353	GGAGGCGGGGCTGCGGGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	74	94	+	14.6735	3.91e-06	0.00353	GGAGGCGGGGCTGCGGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	74	94	+	14.6735	3.91e-06	0.00353	GGAGGCGGGGCTGCGGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	74	94	+	14.6735	3.91e-06	0.00353	GGAGGCGGGGCTGCGGGGGAG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	33	43	-	14.6341	3.91e-06	0.00798	GACACGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	33	43	-	14.6341	3.91e-06	0.00798	GACACGCCCAC
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	39	+	15.0408	3.91e-06	0.0832	GACAGCTGGCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	24	34	-	15.0408	3.91e-06	0.0832	GACAGCTGGCG
EGR4	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	18	33	+	14.9818	3.91e-06	0.0258	GCCCGCCCACGTACCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	28	43	-	14.9818	3.91e-06	0.0258	GCCCGCCCACGTACCT
EGR4	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	82	97	-	14.9818	3.91e-06	0.0258	GCCCGCCCACGTACCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	22	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	22	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	3	13	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	27	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	27	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	28	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	28	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	44	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	44	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	60	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	60	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	60	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	60	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	52	62	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	52	62	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	52	62	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	52	62	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	71	81	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	88	98	-	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	112	+	15.3654	3.91e-06	0.00281	GCCCCTCCCCG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.1.0	13	26	+	15.3788	3.91e-06	0.0117	GCGAGCCGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.0.0	13	26	+	15.3788	3.91e-06	0.0117	GCGAGCCGGGCCTG
Zfx	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	26	39	-	15.3788	3.91e-06	0.0117	GTGGGCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	60	73	+	15.3788	3.91e-06	0.0117	GCGAGCCGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	60	73	+	15.3788	3.91e-06	0.0117	GCGAGCCGGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	76	89	+	15.3788	3.91e-06	0.0117	GTGGGCCGGGCCTC
Gmeb1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	63	79	+	12.5263	3.91e-06	0.359	TGGTTTACGTAAGAGGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	42	+	15.2586	3.92e-06	0.0023	GTCCCACCCCTTCCA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	57	+	15.2586	3.92e-06	0.0023	GTCCCACCCCTTCCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	57	+	15.2586	3.92e-06	0.0023	GTCCCACCCCTTCCA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	23	36	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	26	39	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	34	47	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	34	47	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	37	50	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	37	50	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	26	39	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	29	42	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	31	44	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	32	45	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	34	47	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	35	48	-	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	52	65	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	55	68	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	64	77	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	64	77	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	67	80	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	67	80	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	67	80	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	67	80	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	67	80	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	68	81	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	70	83	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	70	83	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	70	83	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	73	86	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	73	86	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	73	86	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	73	86	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	73	86	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	76	89	+	15.25	3.92e-06	0.00435	CCTCCTCCTCCTCC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	40	52	+	11.8571	3.92e-06	0.226	CGGGGGAGCCCCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	-	15.5	3.92e-06	0.14	AGCAGCTGTT
ERF	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	15.2429	3.92e-06	0.042	ACCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.8966	3.92e-06	0.0454	GCCGGAAGTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	15.7234	3.92e-06	0.0603	ACCGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	15.7234	3.92e-06	0.0603	ACCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	14.8182	3.92e-06	0.0626	ACCGGAAGCG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	16.2128	3.92e-06	0.0372	GCCGGAAGTG
Ascl2	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	+	15.5	3.92e-06	0.14	AGCAGCTGTT
Ascl2	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	+	15.5	3.92e-06	0.14	AGCAGCTGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.8966	3.92e-06	0.0454	GCCGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	14.8621	3.92e-06	0.0577	ACCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	16.2128	3.92e-06	0.0372	GCCGGAAGTG
KLF14	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	26	39	+	15.1207	3.92e-06	0.0117	CGTCACGCCCACCG
SPI1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	50	63	+	12.4	3.93e-06	0.0791	AAGAAGGGGAAGTT
SPI1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	52	65	-	12.4	3.93e-06	0.0791	AAGAAGGGGAAGTT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	34	48	+	14.7869	3.93e-06	0.0271	GGCCCCGCCCACAGT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	34	48	+	14.7869	3.93e-06	0.0271	GGCCCCGCCCACAGT
HOXC13	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	61	-	15.4194	3.93e-06	1	CCTCGTAAAAG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	+	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	+	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	+	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	+	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	-	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	-	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
ATF7	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	-	15.4	3.93e-06	0.0727	CCGTGACGTCACAA
EHF	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	27	-	15.3443	3.94e-06	0.0691	GAGCCGGAAGTG
EHF	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	64	75	+	15.3443	3.94e-06	0.0691	GAGCCGGAAGTG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	-	15.377	3.94e-06	0.039	CGCCCCCGGGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	+	15.377	3.94e-06	0.039	CGCCCCCGGGGCC
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	52	66	+	15.5	3.94e-06	0.0551	GCATGAGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	52	66	+	15.5	3.94e-06	0.0551	GCATGAGCCAATGGG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	28	42	-	15.5	3.94e-06	0.0551	GCATGAGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	28	42	-	15.5	3.94e-06	0.0551	GCATGAGCCAATGGG
JUN(var.2)	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	15	-	15.3462	3.94e-06	0.118	CAGAGATGACTCAC
KLF16	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	91	101	+	15.3103	3.94e-06	0.00608	ACCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	14	24	-	15.3103	3.94e-06	0.00608	ACCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	14	24	-	15.3103	3.94e-06	0.00608	ACCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	14	24	-	15.3103	3.94e-06	0.00608	ACCACGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	14	24	-	15.3103	3.94e-06	0.00608	ACCACGCCCCT
ATF7	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	35	48	-	15.3857	3.94e-06	0.0727	GTGTGACGTCATGC
ATF7	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	40	53	-	15.3857	3.94e-06	0.0727	GTGTGACGTCATGC
ATF7	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	62	75	+	15.3857	3.94e-06	0.0727	GTGTGACGTCATGC
ATF7	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	67	80	+	15.3857	3.94e-06	0.0727	GTGTGACGTCATGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	24	+	15.0526	3.94e-06	0.0124	ACCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	24	+	15.0526	3.94e-06	0.0124	ACCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	24	+	15.0526	3.94e-06	0.0124	ACCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	24	+	15.0526	3.94e-06	0.0124	ACCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	71	+	15.0526	3.94e-06	0.0124	ACCCCGCCCCCA
MTF1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	75	88	-	13.439	3.94e-06	0.5	GGCGCACACGGCCC
STAT1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	9	19	-	15.7818	3.95e-06	0.148	GTTCTAGGAAA
CEBPA	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	74	84	-	15.0612	3.95e-06	0.625	GTTGCACAATA
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	25	36	+	15.3636	3.95e-06	0.0507	GAACCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	90	-	15.3636	3.95e-06	0.0507	GAACCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	90	-	15.3636	3.95e-06	0.0507	GAACCGGAAGTC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	2	22	-	14.6531	3.96e-06	0.00357	GGAGGAGTTGCGAGAAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	66	86	-	14.6531	3.96e-06	0.00357	TGAAGATGGGGGAGGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	66	86	-	14.6531	3.96e-06	0.00357	TGAAGATGGGGGAGGGGAGAG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	+	14.8077	3.96e-06	0.0521	TGCCCGAGGCA
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	-	14.8077	3.96e-06	0.0521	TGCCCGAGGCA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	-	14.8077	3.96e-06	0.0521	AGCCCGAGGCT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	14.0962	3.97e-06	0.276	AACACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	14.0962	3.97e-06	0.276	AACACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	13.9848	3.97e-06	0.247	GCCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	13.9848	3.97e-06	0.247	GCCACGTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	11	24	-	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	29	42	+	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	25	38	-	15.2308	3.97e-06	0.00435	GCCCCACCCACGTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	25	38	-	15.2308	3.97e-06	0.00435	GCCCCACCCACGTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	25	38	-	15.2308	3.97e-06	0.00435	GCCCCACCCACGTC
EGR1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	34	47	-	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	37	50	-	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	38	51	-	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	64	77	+	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	64	77	+	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	64	77	+	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	65	78	+	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	68	81	-	15.2308	3.97e-06	0.00435	CCGCCTCCTCCTCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	1	14	-	15.1034	3.97e-06	0.0117	CGTCCCGCCCCCTT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	76	89	+	15.1034	3.97e-06	0.0117	AAACACGCCCATTC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	4	21	-	-0.855263	3.97e-06	0.0177	GAAGAGGAGGAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	4	21	-	-0.855263	3.97e-06	0.0177	GAAGAGGAGGAGGGAAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	94	111	+	-0.855263	3.97e-06	0.0177	GAAGAGGAGGAGGGAAGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	47	+	15.2414	3.97e-06	0.00232	TCCCCACCCCCCACC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	47	+	15.2414	3.97e-06	0.00232	TCCCCACCCCCCACC
SP2	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	25	39	-	15.2414	3.97e-06	0.00232	GCCCCGCCCTTTGAG
SP2	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	32	46	-	15.2414	3.97e-06	0.00232	GTCCCTCCCCCACAC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	53	67	+	15.2414	3.97e-06	0.00232	GTCCCTCCCCCACAC
SP2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	48	62	-	15.2414	3.97e-06	0.00232	GTCCCTCCCCCACAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	53	67	-	15.2414	3.97e-06	0.00232	TCCCCGCCTCCGCGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	53	67	-	15.2414	3.97e-06	0.00232	TCCCCGCCTCCGCGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	53	67	-	15.2414	3.97e-06	0.00232	TCCCCGCCTCCGCGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	53	67	-	15.2414	3.97e-06	0.00232	TCCCCGCCTCCGCGA
SP2	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	69	83	+	15.2414	3.97e-06	0.00232	GTCCCTCCCCCACAC
JUND	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	+	15.8936	3.98e-06	0.113	GATGAGTCATC
JUND	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	-	15.8936	3.98e-06	0.113	AATGACTCATG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	23	33	+	15.0345	3.98e-06	0.0586	CTGCCCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	23	33	+	15.0345	3.98e-06	0.0586	CTGCCCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	23	33	+	15.0345	3.98e-06	0.0586	CTGCCCACGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	23	33	+	15.0345	3.98e-06	0.0586	CTGCCCACGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	82	92	-	15.0345	3.98e-06	0.0586	CTGCCCACGCA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	67	80	+	15.3636	3.98e-06	0.0118	GGAACCCCGGCCTG
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	28	39	-	14.7229	3.98e-06	0.534	ATATGCAAATCA
SP4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	31	47	-	12.8182	3.98e-06	0.00649	CCCGCCCCGCCCATCTC
SP4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	68	84	+	12.8182	3.98e-06	0.00649	CCCGCCCCGCCCATCTC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	+	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	-	15.2909	3.98e-06	0.0519	CGCCCGAGGCG
RORA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	49	62	+	16.1011	3.99e-06	0.464	TAAAAATAGGTCAG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	72	86	+	15.2727	3.99e-06	0.0886	AAACTTTCAGTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	72	86	+	15.2727	3.99e-06	0.0886	AAACTTTCAGTTTCT
ELF5	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	59	-	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	62	72	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	62	72	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	62	72	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	62	72	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	62	72	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	65	75	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	65	75	+	14.0727	3.99e-06	0.0786	TCCCGGAAGTG
E2F4	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	3	13	-	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	22	32	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	23	33	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	23	33	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	38	48	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	38	48	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	57	67	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	48	58	-	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	82	92	-	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	83	93	-	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	102	112	+	15.4483	3.99e-06	0.0186	GCGCGGGAGGG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	1	14	+	11.383	3.99e-06	0.153	GGGGTCAGGGGTGA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	1	14	+	11.383	3.99e-06	0.153	GGGGTCAGGGGTGA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	21	+	15.5082	3.99e-06	0.0537	TGCCCCGGGGGGG
NRF1	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	32	42	+	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	31	41	-	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	32	42	-	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	35	45	-	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	70	80	+	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	70	80	+	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	74	84	+	15.5091	3.99e-06	0.0037	GAGCATGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	73	83	-	15.5091	3.99e-06	0.0037	GAGCATGCGCG
FOXB1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	12	-	14.8077	4e-06	1	AATGTAAACAT
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	88	99	+	15.3846	4e-06	0.0376	CAGGATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	88	99	+	15.3846	4e-06	0.0376	CAGGATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	88	99	+	15.3846	4e-06	0.0376	CAGGATGGCGGC
Hoxd8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	20	+	14.5833	4e-06	1	CAATTAATTAAGAGCTT
Hoxd8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	20	+	14.5833	4e-06	1	CAATTAATTAAGAGCTT
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	2	11	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	2	11	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	2	11	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	2	11	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	13	22	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	13	22	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	15	24	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	16	25	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	13	22	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	13	22	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	15	24	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	25	34	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	16	25	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	29	38	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	31	40	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	31	40	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	31	40	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	31	40	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	34	43	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	25	34	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	34	43	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	29	38	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	31	40	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	31	40	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	31	40	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	31	40	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	34	43	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	34	43	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	46	55	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	47	56	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	47	56	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	50	59	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	50	59	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	51	60	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	52	61	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	52	61	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	46	55	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	55	64	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	47	56	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	56	65	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	56	65	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	47	56	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	59	68	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	59	68	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	50	59	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	50	59	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	51	60	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	60	69	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	52	61	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	52	61	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	55	64	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	64	73	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	56	65	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	56	65	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	59	68	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	68	77	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	59	68	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	60	69	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	64	73	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	77	86	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	68	77	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	81	90	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	77	86	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	81	90	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	91	100	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	93	102	+	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	91	100	-	10.75	4e-06	0.0189	CGCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	93	102	-	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	104	113	+	10.75	4e-06	0.0189	GGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	104	113	-	10.75	4e-06	0.0189	CGCGCGCGCC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	4	17	-	15.3269	4e-06	0.118	GGAGAGTGAGTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	4	17	-	15.3269	4e-06	0.118	GGAGAGTGAGTCAG
RXRB	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	51	-	10.5091	4e-06	0.141	GGGGTCAAGGGGCG
RXRB	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	64	77	+	10.5091	4e-06	0.141	GGGGTCAAGGGGCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	23	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	24	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	38	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	38	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	40	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	40	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	60	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	60	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	67	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	67	+	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	48	58	-	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	71	-	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	71	-	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	75	85	-	15.3462	4e-06	0.00284	CCCCCGCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	77	87	-	15.3462	4e-06	0.00284	CCCCCGCCCTC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	9	18	+	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	6	15	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	15	24	+	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	6	15	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	32	41	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	33	42	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	33	42	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	45	54	+	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	51	60	+	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	54	63	+	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	55	64	-	15.3486	4e-06	0.0169	CCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	61	70	-	15.3486	4e-06	0.0169	CCCCCCCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	14	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	14	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	8	17	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	4	13	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	25	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	25	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	31	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	31	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	32	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	32	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	15	24	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	23	32	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	25	34	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	29	38	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	45	54	-	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	64	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	64	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	70	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	69	78	+	15.3061	4e-06	0.00432	GCCCCTCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	90	+	15.3061	4e-06	0.00432	GCCCCTCCCA
NFYB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	19	33	+	15.4808	4.01e-06	0.0551	GCTGTGACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	19	33	+	15.4808	4.01e-06	0.0551	GCTGTGACCAATCAG
NFYB	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	82	96	-	15.4808	4.01e-06	0.0551	GCTGTGACCAATCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	23	36	-	15.0862	4.01e-06	0.0117	GGTCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	23	36	-	15.0862	4.01e-06	0.0117	GGTCCCGCCCCTCT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	11	31	-	14.9194	4.01e-06	0.0851	AGCTGCTCTTACTTTCACTTT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	13	30	-	15.0122	4.01e-06	0.03	ACCCCGCCCATTGGCCCG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	13	30	-	15.0122	4.01e-06	0.03	ACCCCGCCCATTGGCCCG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	13	30	-	15.0122	4.01e-06	0.03	ACCCCGCCCATTGGCCCG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	13	30	-	15.0122	4.01e-06	0.03	ACCCCGCCCATTGGCCCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	10	30	+	14.6327	4.01e-06	0.00359	GAAGCAGGCGCGGGGAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	10	30	+	14.6327	4.01e-06	0.00359	GAAGCAGGCGCGGGGAGGAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	39	59	+	14.6327	4.01e-06	0.00359	GGGGGAAGAGTAGGGAGAATG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	48	68	+	14.6327	4.01e-06	0.00359	GGTGGAGATGGGGCATGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	83	103	-	14.6327	4.01e-06	0.00359	GGGAGAGGGGGAAAAGAAGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	83	103	-	14.6327	4.01e-06	0.00359	GGGAGAGGGGGAAAAGAAGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	29	45	-	12.8	4.01e-06	0.00649	GAGGACCCGCCCCCGAG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	29	45	-	12.8	4.01e-06	0.00649	GAGGACCCGCCCCCGAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	29	45	-	12.8	4.01e-06	0.00649	GAGGACCCGCCCCCGAG
SP4	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	35	51	-	12.8	4.01e-06	0.00649	CCGGCCCCTCCCCCTCA
SP4	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	64	80	+	12.8	4.01e-06	0.00649	CCGGCCCCTCCCCCTCA
SP4	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	70	86	+	12.8	4.01e-06	0.00649	GAGGACCCGCCCCCGAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	32	42	+	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	32	42	+	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	32	42	+	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	32	42	+	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	85	95	-	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	85	95	-	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	85	95	-	15.4286	4.01e-06	0.0846	AGGTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	85	95	-	15.4286	4.01e-06	0.0846	AGGTGACTCAT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	50	64	+	14.8689	4.02e-06	0.167	ATGACTCTGCAGGAA
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	50	64	+	14.8689	4.02e-06	0.167	ATGACTCTGCAGGAA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	45	+	15.2241	4.02e-06	0.00233	GGCCCGCCCACTTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	45	+	15.2241	4.02e-06	0.00233	GGCCCGCCCACTTCT
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	38	51	+	13.8085	4.02e-06	0.0778	CGCCCCCCGCAGGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	40	53	-	15.2115	4.02e-06	0.00441	CCCTCACCCCCTCC
FOSL1	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	+	15.5818	4.02e-06	0.0694	AGTGAGTCATC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	-	15.5818	4.02e-06	0.0694	AGTGAGTCATC
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	40	54	-	14.1379	4.02e-06	0.0215	TCCCGCCCCCGCTGC
EGR3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	61	75	+	14.1379	4.02e-06	0.0215	TCCCGCCCCCGCTGC
SOX9	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	11	19	-	13.7927	4.03e-06	0.78	CCATTGTTC
SOX9	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	36	44	+	13.7927	4.03e-06	0.78	CCATTGTTC
SOX9	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	78	86	+	13.7927	4.03e-06	0.78	CCATTGTTC
SOX9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	96	104	+	13.7927	4.03e-06	0.78	CCATTGTTC
SOX9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	96	104	+	13.7927	4.03e-06	0.78	CCATTGTTC
Barhl1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	-	10.7547	4.03e-06	1	GCTAATTGGC
TEAD1	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	14	23	-	13.2419	4.03e-06	0.741	CACATTCCTT
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	-	15.0152	4.04e-06	0.0616	GGATTCCATGGTAACC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	-	15.0152	4.04e-06	0.0616	GGATTCCATGGTAACC
FOXH1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	33	43	-	15.3846	4.04e-06	1	GGCAATCCACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	72	82	+	15.3846	4.04e-06	1	GGCAATCCACA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	59	73	-	14.4571	4.04e-06	0.0815	AGCCTCCCGCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	59	73	-	14.4571	4.04e-06	0.0815	AGCCTCCCGCCGCGC
Creb5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	40	-	15.6909	4.04e-06	0.0992	GGTGACGTCACC
Creb5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	86	-	15.6909	4.04e-06	0.0992	GGTGACGTCACC
Creb5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	40	+	15.6909	4.04e-06	0.0992	GGTGACGTCACC
Creb5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	86	+	15.6909	4.04e-06	0.0992	GGTGACGTCACC
Zfx	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	75	88	-	15.3485	4.04e-06	0.0119	GCTGGCCAGGCCTG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	26	40	+	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	26	40	+	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	57	71	+	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	44	58	-	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	44	58	-	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	75	89	-	15.0364	4.04e-06	0.0875	CCCCTCCCGCTGCGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	-	15.5172	4.04e-06	0.039	GGCCCCGAGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	+	15.5172	4.04e-06	0.039	GGCCCCGAGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	+	15.5172	4.04e-06	0.039	GGCCCCGAGGGGA
KLF13	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	51	68	+	13.0862	4.05e-06	0.0601	GGACCACGCCCTCTTCTA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	7	21	+	14.6306	4.05e-06	0.124	GGGGGGCAGAGGGAA
Rfx1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	81	94	+	15.0517	4.05e-06	0.0526	GTCGCCATGGGAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	21	34	-	15.0517	4.05e-06	0.0526	GTCGCCATGGGAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	21	34	-	15.0517	4.05e-06	0.0526	GTCGCCATGGGAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	31	44	-	15.0517	4.05e-06	0.0526	GTCGCCATGGGAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	31	44	-	15.0517	4.05e-06	0.0526	GTCGCCATGGGAAC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	36	46	-	15.1837	4.05e-06	0.0533	ATCATGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	36	46	-	15.1837	4.05e-06	0.0533	ATCATGTGACC
USF1	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	14	+	15.1837	4.05e-06	0.0533	ATCATGTGACC
HOXD12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	39	-	15.4098	4.05e-06	0.549	GATCGTAAAAA
HOXD12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	39	-	15.4098	4.05e-06	0.549	GATCGTAAAAA
HOXD12	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	76	86	+	15.4098	4.05e-06	0.549	GATCGTAAAAA
HOXC11	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	39	-	14.7931	4.05e-06	1	GATCGTAAAAA
HOXC11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	39	-	14.7931	4.05e-06	1	GATCGTAAAAA
HOXC11	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	76	86	+	14.7931	4.05e-06	1	GATCGTAAAAA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	58	-	12.0459	4.05e-06	0.0291	CACCCACCCCCCACCCCCAC
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	+	14.7885	4.05e-06	0.0521	CGCCCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	+	14.7885	4.05e-06	0.0521	CGCCCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	+	14.7885	4.05e-06	0.0521	CGCCCCAGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	-	14.7885	4.05e-06	0.0521	CGCCCCAGGCG
GSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	97	106	-	13.4906	4.06e-06	0.971	GCTAATCCGC
GSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	97	106	-	13.4906	4.06e-06	0.971	GCTAATCCGC
Myc	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	16	25	+	15.2909	4.06e-06	0.189	CCACGTGGTT
Myc	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	90	99	-	15.2909	4.06e-06	0.189	CCACGTGGTT
ETV3	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	14.6901	4.06e-06	0.0449	ACCGGAAATG
ETV3	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	14.6901	4.06e-06	0.0449	ACCGGAAATG
ETV3	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	14.6901	4.06e-06	0.0449	ACCGGAAATG
ETV3	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	14.6901	4.06e-06	0.0449	ACCGGAAATG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	12	23	+	15.2241	4.06e-06	0.202	GCGACCACAATT
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	48	59	+	15.2241	4.06e-06	0.202	GCGACCACAATT
SP2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	24	+	15.2069	4.06e-06	0.00233	GCCCCTCCTCCAGCG
SP2	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	11	25	+	15.2069	4.06e-06	0.00233	AGCCCGCCCCTCGCG
SP2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	12	26	-	15.2069	4.06e-06	0.00233	GCCCCTCCTCCAGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	16	30	-	15.2069	4.06e-06	0.00233	GCCCCACCCCACCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	16	30	-	15.2069	4.06e-06	0.00233	GCCCCACCCCACCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	18	32	-	15.2069	4.06e-06	0.00233	CCTCCGCCCCCGCTC
SP2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	34	48	+	15.2069	4.06e-06	0.00233	CCTCCGCCTCCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	27	41	-	15.2069	4.06e-06	0.00233	TCCCCGCCCCGACCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	27	41	-	15.2069	4.06e-06	0.00233	TCCCCGCCCCGACCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	27	41	-	15.2069	4.06e-06	0.00233	TCCCCGCCCCGACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	27	41	-	15.2069	4.06e-06	0.00233	TCCCCGCCCCGACCC
SP2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	67	81	-	15.2069	4.06e-06	0.00233	CCTCCGCCTCCTTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	96	+	15.2069	4.06e-06	0.00233	CCTCCGCCCCCGCTC
SP2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	103	+	15.2069	4.06e-06	0.00233	GCCCCTCCTCCAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	90	104	+	15.2069	4.06e-06	0.00233	GTCCCGCCCTCGCAT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	90	104	+	15.2069	4.06e-06	0.00233	GTCCCGCCCTCGCAT
SP2	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	90	104	-	15.2069	4.06e-06	0.00233	AGCCCGCCCCTCGCG
SP2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	91	105	-	15.2069	4.06e-06	0.00233	GCCCCTCCTCCAGCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	10	25	-	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	10	25	-	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	10	25	-	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	10	25	-	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	37	52	+	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	27	42	-	14.9273	4.06e-06	0.0258	ACACGCCCCCGCCCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	57	72	+	14.9273	4.06e-06	0.0258	ACACGCCCCCGCCCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	63	78	-	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
EGR4	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	90	105	+	14.9273	4.06e-06	0.0258	CTACGCCCCCACACTT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	20	40	-	14.6122	4.06e-06	0.00363	GGAGGAGCTAGGGCTGGGGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	61	+	14.6122	4.06e-06	0.00363	GGGGGTGGGGGGTGGGTGAGA
SP4	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	2	18	+	12.7636	4.06e-06	0.00656	CGCGCCCCGCCCACCTG
SPIC	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	11	24	+	14.8873	4.07e-06	0.0734	CAAAACAGGAAGTG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	75	87	+	11.7143	4.08e-06	0.226	AGGGGATTCCCAG
Mitf	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	32	41	+	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	35	44	+	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	29	38	-	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	34	43	-	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	47	56	+	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	47	56	+	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	58	67	+	12.7857	4.08e-06	0.051	GGTCACGTGA
Mitf	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	60	69	-	12.7857	4.08e-06	0.051	GGTCACGTGA
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	+	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
RFX3	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	-	14.7424	4.08e-06	0.045	CGCTGCCATGGAGACA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	19	35	-	12.7455	4.09e-06	0.00658	GGCGCCCCGCCCCCATG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	19	35	-	12.7455	4.09e-06	0.00658	GGCGCCCCGCCCCCATG
ELF3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	34	46	-	14.8966	4.09e-06	0.0804	GAACCGGAAGTAG
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	69	81	+	14.8966	4.09e-06	0.0804	GAACCGGAAGTAG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	69	81	+	14.8966	4.09e-06	0.0804	GAACCGGAAGTAG
ETV2	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	26	36	+	15.7213	4.09e-06	0.118	CACCGGAAATG
ETV2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	96	106	+	15.7213	4.09e-06	0.118	CACCGGAAATG
ETV2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	19	-	15.7213	4.09e-06	0.118	CACCGGAAATG
ETV2	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	89	-	15.7213	4.09e-06	0.118	CACCGGAAATG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	6	20	-	15.0182	4.09e-06	0.0875	GAACGCCCGCTGTGA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	6	20	-	15.0182	4.09e-06	0.0875	GAACGCCCGCTGTGA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	6	20	-	15.0182	4.09e-06	0.0875	GAACGCCCGCTGTGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	6	20	-	15.0182	4.09e-06	0.0875	GAACGCCCGCTGTGA
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	72	86	+	15.0182	4.09e-06	0.0875	GGTCCCCCGCCGTGC
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	19	+	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	33	-	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	33	-	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	33	-	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	33	-	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	33	-	15.1207	4.09e-06	0.0674	CGCACCTGCG
NHLH1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	91	+	15.1207	4.09e-06	0.0674	CGCACCTGCG
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	43	59	+	5.49438	4.09e-06	0.166	CGAGGTCAGGGGTCAGC
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	90	102	+	15.1475	4.09e-06	0.326	CTGGCTCTCACCC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	9	26	-	13.0517	4.1e-06	0.0601	CGACCACGCCCCTAGATA
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	9	26	-	13.0517	4.1e-06	0.0601	CGACCACGCCCCTAGATA
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	9	26	-	13.0517	4.1e-06	0.0601	CGACCACGCCCCTAGATA
KLF13	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	89	106	+	13.0517	4.1e-06	0.0601	CGACCACGCCCCTAGATA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	12	26	+	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	12	26	+	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	22	36	-	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	22	36	-	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	79	93	+	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	89	103	-	14.9286	4.1e-06	0.0701	GCGGGGCAGGGGGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	25	38	+	15.0345	4.11e-06	0.0118	CGCCCCGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	55	68	-	15.0345	4.11e-06	0.0118	GACCCCGCCCCTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	55	68	-	15.0345	4.11e-06	0.0118	GACCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	55	68	-	15.0345	4.11e-06	0.0118	GACCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	55	68	-	15.0345	4.11e-06	0.0118	GACCCCGCCCCTCC
SPI1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	78	-	12.2727	4.11e-06	0.0791	AGGAAGCGGAAGTA
SP8	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	46	+	14.9868	4.11e-06	0.0124	ACCCCGCCCACA
Gabpa	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	24	34	+	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	67	77	+	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	67	77	+	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	96	106	+	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	9	19	-	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	9	19	-	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	9	19	-	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	9	19	-	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	38	48	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	39	49	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	39	49	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	39	49	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	68	78	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	68	78	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	68	78	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	68	78	-	15.2131	4.11e-06	0.018	CCGGAAGTCCC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	81	91	-	15.2131	4.11e-06	0.018	CCGGAAGTCGG
Stat6	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	58	72	+	15.3448	4.11e-06	0.235	TGTTTCCAGAGAAAG
Stat6	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	95	109	+	15.3448	4.11e-06	0.235	TGTTTCCAGAGAAAG
Stat6	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	6	20	-	15.3448	4.11e-06	0.235	TGTTTCCAGAGAAAG
Stat6	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	43	57	-	15.3448	4.11e-06	0.235	TGTTTCCAGAGAAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	3	23	+	14.5918	4.11e-06	0.00364	GGAGGAGGGAGGCGGGGTCAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	3	23	+	14.5918	4.11e-06	0.00364	GGAGGAGGGAGGCGGGGTCAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	7	27	-	14.5918	4.11e-06	0.00364	GGAGGAGGGAGGCGGGGTCAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	30	50	+	14.5918	4.11e-06	0.00364	GGAGCCGGGGGAGGGAGACGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	33	53	+	14.5918	4.11e-06	0.00364	TGTGAAGGAAGTGAAGGGGGA
ZNF263	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	62	82	-	14.5918	4.11e-06	0.00364	TGTGAAGGAAGTGAAGGGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	65	85	-	14.5918	4.11e-06	0.00364	GGAGCCGGGGGAGGGAGACGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	88	108	+	14.5918	4.11e-06	0.00364	GGAGGAGGGAGGCGGGGTCAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	89	109	-	14.5918	4.11e-06	0.00364	GGGGGCGGGGGGTAGAGAAAG
ZNF263	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	92	112	-	14.5918	4.11e-06	0.00364	GGAGGAGGGAGGCGGGGTCAG
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	+	14.7273	4.12e-06	0.045	GGTCGCCCTGACAACG
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	+	14.7273	4.12e-06	0.045	GGTCGCCCTGACAACG
PLAG1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	27	40	+	13.4082	4.12e-06	0.0582	GAGGGGCACAGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	75	88	-	13.4082	4.12e-06	0.0582	GAGGGGCACAGGGG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	44	60	+	12.7273	4.12e-06	0.00659	CAGACCACGCCCCGCTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	44	60	+	12.7273	4.12e-06	0.00659	CAGACCACGCCCCGCTG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	21	35	-	15.1897	4.12e-06	0.00236	TCCCCGCCTCCACAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	36	50	+	15.1897	4.12e-06	0.00236	GTTCCTCCTCCCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	36	50	+	15.1897	4.12e-06	0.00236	GTTCCTCCTCCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	38	52	-	15.1897	4.12e-06	0.00236	GTTCCTCCTCCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	38	52	-	15.1897	4.12e-06	0.00236	GTTCCTCCTCCCCCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	+	15.2545	4.12e-06	0.0519	AGCCGCAGGCA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	+	15.2545	4.12e-06	0.0519	AGCCGCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	-	15.2545	4.12e-06	0.0519	AGCCGCAGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	-	15.2545	4.12e-06	0.0519	AGCCGCAGGCA
USF2	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	36	46	-	15.2653	4.12e-06	0.045	ATCATGTGACT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	43	53	-	15.2653	4.12e-06	0.045	GTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	43	53	-	15.2653	4.12e-06	0.045	GTCATGTGATC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	29	+	15.2653	4.12e-06	0.045	GTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	29	+	15.2653	4.12e-06	0.045	GTCATGTGATC
USF2	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	78	+	15.2653	4.12e-06	0.045	ATCATGTGACT
ID4	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	4	13	+	14.4262	4.13e-06	0.351	GGCACCTGTC
ID4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	56	+	14.4262	4.13e-06	0.351	GGCACCTGCC
ID4	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	111	-	14.4262	4.13e-06	0.351	GGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	13.8654	4.13e-06	0.278	AACACCTGCT
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	61	73	+	14.8793	4.13e-06	0.0804	TTCCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	61	73	+	14.8793	4.13e-06	0.0804	TTCCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	61	73	+	14.8793	4.13e-06	0.0804	TTCCCGGAAGTGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	61	73	+	14.8793	4.13e-06	0.0804	TTCCCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	61	73	+	14.8793	4.13e-06	0.0804	TTCCCGGAAGTGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	25	36	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	36	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	25	36	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	25	36	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	25	36	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	27	38	-	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	33	44	-	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	71	82	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	77	88	+	14.9737	4.13e-06	0.0124	CCCACCCCCCCC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	70	81	+	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	70	81	+	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	70	81	+	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	70	81	+	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	82	-	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	82	-	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	82	-	15.2545	4.13e-06	0.0507	GACCCGGAAGCA
Gfi1b	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	27	37	-	15.3621	4.13e-06	0.347	AAATCAGAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	66	76	-	15.3621	4.13e-06	0.347	AAACCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	66	76	-	15.3621	4.13e-06	0.347	AAACCACAGCA
DBP	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	-	15.1132	4.14e-06	1	AATTACGTAATG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	63	76	+	12.2545	4.14e-06	0.0791	AAAAGCCGGAAGTA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	63	76	+	12.2545	4.14e-06	0.0791	AAAAGCCGGAAGTA
XBP1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	26	39	-	15.2115	4.14e-06	0.446	CAGTCCACGTCAGC
XBP1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	76	89	+	15.2115	4.14e-06	0.446	CAGTCCACGTCAGC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	40	52	-	15.0303	4.14e-06	0.196	AGGGGCTCCCCCG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.0.0	3	16	-	15.3182	4.14e-06	0.0121	TGCACCGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.1.0	3	16	-	15.3182	4.14e-06	0.0121	TGCACCGAGGCCTG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	22	35	-	15.1731	4.14e-06	0.00454	TCCCCGCCTCCACA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	76	89	+	14.8592	4.14e-06	0.0734	TGAATGAGGAAGAA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	55	68	-	14.8592	4.14e-06	0.0734	TGAATGAGGAAGAA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	73	86	+	15.1034	4.15e-06	0.0952	TTTCCAGGAAGGCT
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	48	-	14.898	4.15e-06	0.0667	TCTGACGTCACC
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	78	+	14.898	4.15e-06	0.0667	TCTGACGTCACC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	68	82	+	14.069	4.15e-06	0.0221	GCCCGCCCACCCAAC
RFX2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	68	83	-	13.4286	4.15e-06	0.0599	AGTCGCCACGGCAACC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	23	36	+	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	23	36	+	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	23	36	+	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	35	48	-	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	35	48	-	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	35	48	-	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
ZIC1	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	79	92	-	13.7447	4.15e-06	0.0778	CCCCCCCCGCTGTC
E2F4	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	20	30	+	15.4138	4.16e-06	0.0191	TGGCGGGAAGA
E2F4	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	85	95	-	15.4138	4.16e-06	0.0191	TGGCGGGAAGA
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	42	56	+	15	4.16e-06	0.143	CACAGTGAGTCAGCG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	50	63	+	15.2885	4.16e-06	0.118	TAAGGATGACTCAG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	52	65	-	15.2885	4.16e-06	0.118	TAAGGATGACTCAG
GLIS2	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	18	31	-	14.5738	4.17e-06	0.176	TCCCCCCCGCGCCG
ELF3	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	64	76	-	14.8621	4.17e-06	0.0804	GACCAGGAAGTGG
ELF3	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	82	94	+	14.8621	4.17e-06	0.0804	GACCAGGAAGTGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	10	30	-	14.5714	4.17e-06	0.00367	AGGGGAGGGGAGCGGAGGGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	23	43	-	14.5714	4.17e-06	0.00367	GGGGGCGGGGCGGGCGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	48	68	+	14.5714	4.17e-06	0.00367	AGGGGAGGGGAGCGGAGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	48	68	+	14.5714	4.17e-06	0.00367	AGGGGAGGGGAGCGGAGGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	58	78	+	14.5714	4.17e-06	0.00367	GGTGGAGGAAGCAGAAAAGGC
SP2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	44	+	15.1724	4.17e-06	0.00237	ACCCCTCCCCCCGGC
SP2	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	17	31	-	15.1724	4.17e-06	0.00237	TCCCCGCCTCCCGGA
SP2	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	33	47	+	15.1724	4.17e-06	0.00237	TCCCCGCCTCCCGGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	20	34	-	15.1724	4.17e-06	0.00237	GCCCCTCCCCTGGTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	20	34	-	15.1724	4.17e-06	0.00237	GCCCCTCCCCTGGTC
SP2	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	51	65	+	15.1724	4.17e-06	0.00237	TCCCCGCCTCCCGGA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	46	60	-	15.1724	4.17e-06	0.00237	GCTCCGCCCACCCTC
SP2	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	50	64	-	15.1724	4.17e-06	0.00237	TCCCCGCCTCCCGGA
SP2	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	84	98	+	15.1724	4.17e-06	0.00237	TCCCCGCCTCCCGGA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	46	59	-	10.803	4.17e-06	0.0894	TGATGACGCCATCG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	46	59	-	10.803	4.17e-06	0.0894	TGATGACGCCATCG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	+	13.431	4.18e-06	0.0543	CGTTGCCACGGAGACC
RFX2	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	+	13.4143	4.18e-06	0.0599	CGTTGCCACGGAGACC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	12	-	15.2364	4.19e-06	0.0507	AAGCCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	12	-	15.2364	4.19e-06	0.0507	AAGCCGGAAGTT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	5	15	+	15.2759	4.19e-06	0.00619	CCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	5	15	+	15.2759	4.19e-06	0.00619	CCCACGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	57	67	+	15.2759	4.19e-06	0.00619	CCCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	48	58	-	15.2759	4.19e-06	0.00619	CCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	48	58	-	15.2759	4.19e-06	0.00619	CCCACGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	54	64	-	15.2759	4.19e-06	0.00619	GCCACTCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	100	110	-	15.2759	4.19e-06	0.00619	CCCACGCCCCT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	21	31	+	15.7636	4.2e-06	0.148	TTTCTGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	21	31	+	15.7636	4.2e-06	0.148	TTTCTGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	32	42	-	15.7636	4.2e-06	0.148	TTTCTGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	32	42	-	15.7636	4.2e-06	0.148	TTTCTGGGAAG
EGR1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	22	35	-	15.1538	4.2e-06	0.00458	GCCCCGCCCTCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	35	48	-	15.1538	4.2e-06	0.00458	CCCCCACCCCCTTA
EGR1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	93	+	15.1538	4.2e-06	0.00458	GCCCCGCCCTCTCC
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	91	102	-	15.1897	4.2e-06	0.202	ACGACCACTCTG
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	91	102	-	15.1897	4.2e-06	0.202	ACGACCACTCTG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	50	63	+	15	4.2e-06	0.012	GGCCCCGCCCCTCG
EBF1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	37	50	+	15.2951	4.2e-06	0.365	CCTCCCTGGGGAAT
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	17	31	+	15.4231	4.2e-06	0.0554	ACCGCAGCCAATGAG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	17	31	+	15.4231	4.2e-06	0.0554	ACCGCAGCCAATGAG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	21	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	21	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	12	21	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	36	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	27	36	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	43	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	43	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	60	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	60	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	60	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	65	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	71	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	71	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	76	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	68	77	-	16.051	4.2e-06	0.00453	AGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	87	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	99	-	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	1	10	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	14	23	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	16	25	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	21	30	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	21	30	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	21	30	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	21	30	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	21	30	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	23	32	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	23	32	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	23	32	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	23	32	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	27	36	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	27	36	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	27	36	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	27	36	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	28	37	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	31	40	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	31	40	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	31	40	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	39	48	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	50	59	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	51	60	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	51	60	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	51	60	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	51	60	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	51	60	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	52	61	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	52	61	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	52	61	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	52	61	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	56	65	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	58	67	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	62	71	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	63	72	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	63	72	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	105	114	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	105	114	+	16.051	4.2e-06	0.00453	GGGGTGGGGC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	89	102	-	15.303	4.21e-06	0.0123	CGGCCCCGGGCCTC
Arntl	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	32	41	+	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	35	44	+	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	29	38	-	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	34	43	-	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	47	56	+	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	47	56	+	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	58	67	+	14.6557	4.21e-06	0.102	GGTCACGTGA
Arntl	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	60	69	-	14.6557	4.21e-06	0.102	GGTCACGTGA
Tcf12	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	34	+	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	59	+	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	59	+	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	81	91	-	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	81	91	-	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	107	+	15	4.21e-06	0.0832	GGCAGCTGCTG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	107	+	15	4.21e-06	0.0832	GGCAGCTGCTG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	57	69	-	15	4.22e-06	0.196	GGGGAAAGCCCCT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	43	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	43	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	63	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	63	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	82	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	82	-	15.1633	4.22e-06	0.0533	GGCACGTGACT
FEV	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	14.6731	4.22e-06	0.0647	ACCGGAAATG
FEV	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	14.6731	4.22e-06	0.0647	ACCGGAAATG
FEV	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	14.6731	4.22e-06	0.0647	ACCGGAAATG
FEV	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	14.6731	4.22e-06	0.0647	ACCGGAAATG
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	25	39	+	15.0779	4.22e-06	0.291	AGTTAATCATTCACT
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	25	39	+	15.0779	4.22e-06	0.291	AGTTAATCATTCACT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	15	35	+	14.551	4.22e-06	0.0037	GAGGAAGGGGCGGCGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	77	97	+	14.551	4.22e-06	0.0037	GGTGGAGAGAGAATGGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	77	97	+	14.551	4.22e-06	0.0037	GGTGGAGAGAGAATGGGGAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	77	97	+	14.551	4.22e-06	0.0037	GGTGGAGAGAGAATGGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	77	97	+	14.551	4.22e-06	0.0037	GGTGGAGAGAGAATGGGGAGA
EGR4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	57	72	+	14.8727	4.22e-06	0.0258	CCACGCCCTCCCATCT
EGR4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	43	58	-	14.8727	4.22e-06	0.0258	CCACGCCCTCCCATCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	58	72	-	15.1552	4.22e-06	0.0024	ACTCCGCCCCCCGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	58	72	-	15.1552	4.22e-06	0.0024	ACTCCGCCCCCCGGC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	24	34	+	15.4182	4.23e-06	0.00387	CCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	27	37	+	15.4182	4.23e-06	0.00387	CCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	28	38	-	15.4182	4.23e-06	0.00387	CCGCATGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	55	65	+	15.4182	4.23e-06	0.00387	CCGCATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	55	65	+	15.4182	4.23e-06	0.00387	CCGCATGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	59	69	-	15.4182	4.23e-06	0.00387	CCGCATGCGCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	49	59	-	15.4091	4.23e-06	0.0344	CGCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	49	59	-	15.4091	4.23e-06	0.0344	CGCCCCACCCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	57	66	-	14.9438	4.23e-06	0.864	ATCGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	57	66	-	14.9438	4.23e-06	0.864	ATCGAGGTCA
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	17	37	+	14.8226	4.23e-06	0.0851	CTTTCCTTTTTTTTTCCCTTT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	8	18	+	15.4364	4.24e-06	0.0675	GGGTGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	8	18	+	15.4364	4.24e-06	0.0675	GGGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	27	37	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	67	77	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	83	93	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	83	93	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	83	93	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	83	93	+	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	44	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	44	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	44	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	44	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	48	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	88	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	81	91	-	15.4364	4.24e-06	0.0675	GGATGAGTCAC
FOSL2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	97	107	-	15.4364	4.24e-06	0.0675	GGGTGAGTCAC
RFX4	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	+	14.9394	4.24e-06	0.0616	CATTGTCATGGAAACC
RFX4	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	-	14.9394	4.24e-06	0.0616	CATTGTCATGGAAACC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	15.2885	4.24e-06	0.0363	CCCGGAAGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	7	24	-	-1.28947	4.24e-06	0.0179	GGAAGTAATGGCGGAAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	7	24	-	-1.28947	4.24e-06	0.0179	GGAAGTAATGGCGGAAGT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	91	108	+	-1.28947	4.24e-06	0.0179	GGAAGTAATGGCGGAAGT
SP8	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	12	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	28	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	28	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	28	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	28	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	11	22	-	14.9342	4.24e-06	0.0124	GACACGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	11	22	-	14.9342	4.24e-06	0.0124	GACACGCCCCTC
SP8	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	16	27	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	17	28	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	27	38	-	14.9342	4.24e-06	0.0124	GCCCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	27	38	-	14.9342	4.24e-06	0.0124	GCCCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	27	38	-	14.9342	4.24e-06	0.0124	GCCCCTCCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	29	40	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	29	40	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	36	47	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	37	48	-	14.9342	4.24e-06	0.0124	GCCCCTCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	68	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	47	58	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	73	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	73	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	73	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	73	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	78	+	14.9342	4.24e-06	0.0124	GCCCCTCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	64	75	-	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
SP8	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	99	+	14.9342	4.24e-06	0.0124	GCCCCGCCCCTT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	40	50	+	15.0545	4.24e-06	0.0236	ACACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	40	50	+	15.0545	4.24e-06	0.0236	ACACTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	42	52	+	15.0545	4.24e-06	0.0236	ACACTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	73	-	15.0545	4.24e-06	0.0236	ACACTTCCGGC
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	49	66	+	9.62069	4.25e-06	0.44	TACAAGTCCCGGCATGCT
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	49	66	+	9.62069	4.25e-06	0.44	TACAAGTCCCGGCATGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	10	24	-	14.0172	4.25e-06	0.0222	CCCCGCCCCCGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	10	24	-	14.0172	4.25e-06	0.0222	CCCCGCCCCCGCCGG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	+	15.2951	4.25e-06	0.039	CGCCCCGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	+	15.2951	4.25e-06	0.039	CGCCCCGCGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	+	15.2951	4.25e-06	0.039	CGCCCCGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	+	15.2951	4.25e-06	0.039	CGCCCCGCGGGCT
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	49	-	14.5676	4.25e-06	0.124	GGGTGACAAAGGTCA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	66	80	+	14.5676	4.25e-06	0.124	GGGTGACAAAGGTCA
HSF2	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	83	95	-	14.8545	4.25e-06	1	TTCCAGAAACTTC
SP1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	13	+	15.25	4.25e-06	0.00297	GCCCCGCCCTT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	3	13	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	3	13	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	4	14	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	9	19	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	20	30	+	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	31	+	15.25	4.25e-06	0.00297	GCCCCGCCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	18	28	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	28	38	+	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	29	39	-	15.25	4.25e-06	0.00297	GCCCCGCCCTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	48	58	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	48	58	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	61	71	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	77	87	-	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	102	112	+	15.25	4.25e-06	0.00297	TCCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	99	109	-	15.25	4.25e-06	0.00297	GCCCCGCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	99	109	-	15.25	4.25e-06	0.00297	GCCCCGCCCTT
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	30	40	+	15.5091	4.26e-06	0.154	AACCGGATATG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	30	40	+	15.5091	4.26e-06	0.154	AACCGGATATG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	+	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	-	14.7692	4.26e-06	0.0521	CGCCCGAGGCG
ESR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	12	28	+	10.1515	4.26e-06	0.264	GGGGGCAGCGCGACCCG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	68	78	+	15.4754	4.26e-06	0.118	AACCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	90	100	+	15.4754	4.26e-06	0.118	AACCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	90	100	+	15.4754	4.26e-06	0.118	AACCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	90	100	+	15.4754	4.26e-06	0.118	AACCGGAAGCG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	90	100	+	15.4754	4.26e-06	0.118	AACCGGAAGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	+	15.4828	4.26e-06	0.039	TCCCTCCGGGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	+	15.4828	4.26e-06	0.039	CGCCCCGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	+	15.4828	4.26e-06	0.039	CGCCCCGCGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	+	15.4828	4.26e-06	0.039	CGCCCCGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	+	15.4828	4.26e-06	0.039	CGCCCCGCGGGCT
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	11	25	+	15.0649	4.26e-06	0.291	GGATAATCATTAACC
HNF1A	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	30	44	-	15.0649	4.26e-06	0.291	GATTAATGGTTAACA
HNF1B	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	31	43	+	15	4.26e-06	0.341	GTTAACCATTAAT
Myog	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	10	20	-	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	95	105	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	95	105	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	95	105	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	95	105	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	103	113	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	103	113	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	103	113	+	15	4.26e-06	0.0573	GGCAGCTGGAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	103	113	+	15	4.26e-06	0.0573	GGCAGCTGGAG
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	45	55	+	15.4909	4.27e-06	0.0711	TGTGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	45	55	+	15.4909	4.27e-06	0.0711	TGTGACTCATG
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	30	43	+	15.2879	4.27e-06	0.0124	AGGGGCGGGGCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	26	41	+	14.8545	4.27e-06	0.0258	GCCCGCCCCCGCCTCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	26	41	+	14.8545	4.27e-06	0.0258	GCCCGCCCCCGCCTCC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	72	92	+	14.8065	4.27e-06	0.0851	CTTCACTTTCAGTATTATTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	72	92	+	14.8065	4.27e-06	0.0851	CTTCACTTTCAGTATTATTTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	14	34	+	14.5306	4.28e-06	0.00373	AGGGGAGAAGAGGAGGGGGCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	36	56	-	14.5306	4.28e-06	0.00373	AGGGGAAAGGGGGAGAGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	68	88	-	14.5306	4.28e-06	0.00373	GAGGAAGGCGAGGCAGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	68	88	-	14.5306	4.28e-06	0.00373	GAGGAAGGCGAGGCAGGAAGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	31	45	+	15.1379	4.28e-06	0.00243	GGCCCTCCCCTCCTC
SP2	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	51	65	+	15.1379	4.28e-06	0.00243	ATCCCGCCCCTTCGT
SP2	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	50	64	-	15.1379	4.28e-06	0.00243	ATCCCGCCCCTTCGT
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	46	59	+	14.9828	4.28e-06	0.054	GGTATCCTGGCAAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	54	67	-	14.9828	4.28e-06	0.054	GGTATCCTGGCAAC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	87	106	+	11.9083	4.28e-06	0.0304	CACGCACCCACCCCACCCGG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	+	15.8511	4.28e-06	0.113	TATGACTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	+	15.8511	4.28e-06	0.113	TATGACTCATG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	31	41	-	15.1639	4.28e-06	0.0186	CCGGAAGCGAA
SP3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	88	+	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	13	23	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	20	30	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	20	30	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	27	37	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	57	67	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	61	71	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	62	72	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	62	72	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	104	114	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	104	114	-	14.6098	4.28e-06	0.00833	GCCCCACCCCC
POU3F2	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	68	79	+	15.1935	4.28e-06	0.447	TTATGCAAATGC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	36	47	-	15.1935	4.28e-06	0.447	TTATGCAAATGC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	36	47	-	15.1935	4.28e-06	0.447	TTATGCAAATGC
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	36	47	-	15.1935	4.28e-06	0.447	TTATGCAAATGC
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	36	47	-	15.1935	4.28e-06	0.447	TTATGCAAATGC
Stat4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	15	28	+	15.069	4.28e-06	0.0952	CTTCCGGGAACCAG
Stat4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	87	100	-	15.069	4.28e-06	0.0952	CTTCCGGGAACCAG
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	44	+	15.1154	4.29e-06	0.00467	GCCCTGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	44	+	15.1154	4.29e-06	0.00467	GCCCTGCCCCCACC
SPI1	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	74	87	-	12.1455	4.29e-06	0.0791	AAAATGAGGAAGAA
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	74	87	-	12.1455	4.29e-06	0.0791	AAAATGAGGAAGAA
SPI1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	74	87	-	12.1455	4.29e-06	0.0791	AAAATGAGGAAGAA
SP8	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	2	13	+	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	5	16	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	6	17	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	14	25	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	20	31	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	24	35	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	26	37	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	29	40	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	32	43	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	45	56	+	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	45	56	+	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	38	49	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	75	86	+	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	80	91	+	14.9079	4.3e-06	0.0124	CCCACCCCCACC
SP8	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	102	113	-	14.9079	4.3e-06	0.0124	CCCACCCCCACC
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	4	17	-	13.2959	4.3e-06	0.0582	GGGGGCCTAGGGAG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	4	17	-	13.2959	4.3e-06	0.0582	GGGGGCCTAGGGAG
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	66	81	+	11.431	4.3e-06	0.231	CACCCACAGTGCTTAG
ELF4	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	25	36	+	15.1148	4.31e-06	0.0492	CAGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	90	-	15.1148	4.31e-06	0.0492	CAGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	90	-	15.1148	4.31e-06	0.0492	CAGCCGGAAGTG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	38	51	+	13.2857	4.32e-06	0.0582	GAGGCGATAGGGGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	9	22	-	14.9483	4.32e-06	0.0122	CGCCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	9	22	-	14.9483	4.32e-06	0.0122	CGCCCCGCCCCTCT
KLF14	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	25	38	-	14.9483	4.32e-06	0.0122	AGTCCCGCCCCCTC
KLF14	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	93	106	+	14.9483	4.32e-06	0.0122	CGCCCCGCCCCTCT
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	8	22	+	14.3421	4.32e-06	0.0875	GGAGTTACTCAGCAA
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	48	63	-	12.0545	4.32e-06	0.109	AGGGCCAAAGTTTAAT
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	77	92	-	12.0545	4.32e-06	0.109	AGGGCCAAAGTTTAAT
KLF13	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	30	47	-	12.9138	4.33e-06	0.0601	AGGCCACGCCCCCAGCCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	7	20	-	13.6383	4.33e-06	0.0778	GAACGCCCGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	7	20	-	13.6383	4.33e-06	0.0778	GAACGCCCGCTGTG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	7	20	-	13.6383	4.33e-06	0.0778	GAACGCCCGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	7	20	-	13.6383	4.33e-06	0.0778	GAACGCCCGCTGTG
MEOX2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	11.3069	4.34e-06	1	GGTAATTAAG
MEOX2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	11.3069	4.34e-06	1	GGTAATTAAG
SP2	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	11	25	+	15.1207	4.34e-06	0.00245	GCACCGCCTCCCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	1	15	-	15.1207	4.34e-06	0.00245	GCTCCGCCCCGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	28	42	-	15.1207	4.34e-06	0.00245	CTCCCGCCTTTCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	28	42	-	15.1207	4.34e-06	0.00245	CTCCCGCCTTTCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	90	104	-	15.1207	4.34e-06	0.00245	GCACCGCCTCCCTCC
Klf12	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	25	39	-	14.5902	4.34e-06	0.0271	GACCCCGCCCCCTTT
Klf12	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	99	113	-	14.5902	4.34e-06	0.0271	GACCCCGCCCCCTTT
Klf12	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	2	16	+	14.5902	4.34e-06	0.0271	GACCCCGCCCCCTTT
Klf12	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	76	90	+	14.5902	4.34e-06	0.0271	GACCCCGCCCCCTTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	19	35	+	12.5818	4.34e-06	0.00679	GAGTCCACGCCCACCCG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	19	35	+	12.5818	4.34e-06	0.00679	GAGTCCACGCCCACCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	19	35	+	12.5818	4.34e-06	0.00679	GAGTCCACGCCCACCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	19	35	+	12.5818	4.34e-06	0.00679	GAGTCCACGCCCACCCG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	82	+	14.8776	4.34e-06	0.0667	GATGACGTCAGT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	82	+	14.8776	4.34e-06	0.0667	GATGACGTCAGT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	82	+	14.8776	4.34e-06	0.0667	GATGACGTCAGT
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	3	16	+	14.6515	4.34e-06	0.198	CCGCCACGTGACCG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	3	16	+	14.6515	4.34e-06	0.198	CCGCCACGTGACCG
CREB3L1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	29	42	-	14.6515	4.34e-06	0.198	CCGCCACGTGACCG
CREB3L1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	73	86	+	14.6515	4.34e-06	0.198	CCGCCACGTGACCG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	99	112	-	14.6515	4.34e-06	0.198	CCGCCACGTGACCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	+	15.1818	4.35e-06	0.0519	TGCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	+	15.1818	4.35e-06	0.0519	TGCCCCAGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	-	15.1818	4.35e-06	0.0519	TGCCCCAGGCG
EHF	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	60	-	15.2295	4.35e-06	0.0691	CTCCCGGAAGTG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	23	36	-	15.0962	4.35e-06	0.00473	TCCCCACCCCCAGC
E2F8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	41	52	-	12.8049	4.35e-06	0.631	TCTCCCGCCAAG
E2F8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	41	52	-	12.8049	4.35e-06	0.631	TCTCCCGCCAAG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	14	28	+	14.9394	4.35e-06	0.143	CCCGGTGACTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	14	28	+	14.9394	4.35e-06	0.143	CCCGGTGACTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	95	109	-	14.9394	4.35e-06	0.143	CCCGGTGACTCAGCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	95	109	-	14.9394	4.35e-06	0.143	CCCGGTGACTCAGCG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	46	63	+	-1.55263	4.36e-06	0.0179	GGGAAGAAGAAAGGGAGG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	36	46	-	15.4	4.36e-06	0.00397	ACGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	36	46	-	15.4	4.36e-06	0.00397	ACGCGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	40	50	-	15.4	4.36e-06	0.00397	ACGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	40	50	-	15.4	4.36e-06	0.00397	ACGCGTGCGCA
Klf1	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	19	29	+	15.3939	4.36e-06	0.0344	GACCACGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	21	31	+	15.3939	4.36e-06	0.0344	GACCACGCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	70	80	+	15.3939	4.36e-06	0.0344	GACCACGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	35	45	-	15.3939	4.36e-06	0.0344	GACCACGCCCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	98	108	+	14.8793	4.37e-06	0.0586	GCGCCCACGCT
EGR2	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	7	17	-	14.8793	4.37e-06	0.0586	GCGCCCACGCT
SP1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	24	34	-	15.2308	4.37e-06	0.00304	GCCCCTCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	91	+	15.2308	4.37e-06	0.00304	GCCCCTCCCAC
SP4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	57	73	+	12.5636	4.37e-06	0.00679	CGGGCCCCGCCCTCCTC
SP4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	42	58	-	12.5636	4.37e-06	0.00679	CGGGCCCCGCCCTCCTC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	+	15.2623	4.37e-06	0.039	CGCCCCGAGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	+	15.2623	4.37e-06	0.039	CGCCCCGAGGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	-	15.2623	4.37e-06	0.039	CGCCCCGAGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	-	14.75	4.37e-06	0.0521	AGCCCGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	-	14.75	4.37e-06	0.0521	AGCCCGAGGCG
Klf12	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	17	31	+	14.5738	4.37e-06	0.0271	GGCCCCGCCCACAAG
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	-	11.6531	4.38e-06	0.428	TGACATCTGACA
Foxo1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	51	61	+	14.8966	4.38e-06	0.555	GGCTGTTTACA
EGR4	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	14	29	+	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	22	37	+	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	22	37	+	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	22	37	+	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	22	37	+	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	37	52	-	14.8182	4.39e-06	0.0258	CTCCGCCCCCGCCCGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	37	52	-	14.8182	4.39e-06	0.0258	CTCCGCCCCCGCCCGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	37	52	-	14.8182	4.39e-06	0.0258	CTCCGCCCCCGCCCGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	37	52	-	14.8182	4.39e-06	0.0258	CTCCGCCCCCGCCCGG
EGR4	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	78	93	-	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	86	101	-	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	86	101	-	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	86	101	-	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	86	101	-	14.8182	4.39e-06	0.0258	GCACGCGCACGCAATG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	18	31	-	15.1714	4.39e-06	0.0727	AGATTACGTCACCC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	18	31	-	15.1714	4.39e-06	0.0727	AGATTACGTCACCC
TBX20	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	61	71	-	15.1364	4.39e-06	0.676	TGGGTGTGAAG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	-	14.6212	4.39e-06	0.045	GGGCGCCATAGCAACG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	-	14.6212	4.39e-06	0.045	GGGCGCCATAGCAACG
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	-	14.6212	4.39e-06	0.045	GGGCGCCATAGCAACG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	-	14.6212	4.39e-06	0.045	GGGCGCCATAGCAACG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	-	14.6212	4.39e-06	0.045	GGGCGCCATAGCAACG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	73	83	-	15.1224	4.39e-06	0.126	CTTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	73	83	-	15.1224	4.39e-06	0.126	CTTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	42	+	15.1224	4.39e-06	0.126	CTTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	68	+	15.1224	4.39e-06	0.126	CTTCCTGGAAA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	-	14.6364	4.4e-06	0.054	CGCCCCCCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	-	14.6364	4.4e-06	0.054	CGCCCCCCGGCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	10	24	+	15.1034	4.4e-06	0.00248	CTCCCTCCTCCCGCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	82	-	14.8571	4.4e-06	0.0667	ACTGACGTCATC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	82	-	14.8571	4.4e-06	0.0667	ACTGACGTCATC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	82	-	14.8571	4.4e-06	0.0667	ACTGACGTCATC
KLF16	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	16	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	19	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	20	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	30	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	30	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	35	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	38	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	38	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	42	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	42	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	42	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	42	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	42	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	43	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	43	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	43	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	43	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	43	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	44	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	44	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	46	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	46	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	47	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	47	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	49	+	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	1	11	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	1	11	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	13	23	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	33	43	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	42	52	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	42	52	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	42	52	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	42	52	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	42	52	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	44	54	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	71	81	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	73	83	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	99	109	-	15.2069	4.4e-06	0.00619	TCCCCGCCCCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	11	25	+	15.1212	4.4e-06	0.0305	TTCTCGCGATAGTGA
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	11	25	+	15.1212	4.4e-06	0.0305	TTCTCGCGATAGTGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	4	20	+	12.5455	4.4e-06	0.00679	CCCGCCCCGCCCCCAGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	27	43	-	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	50	66	+	12.5455	4.4e-06	0.00679	GAAGCTCCGCCCCTCGC
SP4	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	72	88	+	12.5455	4.4e-06	0.00679	CTGGCCCCACCCACATC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	60	74	-	14.5574	4.41e-06	0.0271	AGCCACGCCCACGCG
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	78	92	+	15.0423	4.41e-06	0.341	CTACAGTAAACAAAT
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	42	-	15.1571	4.41e-06	0.0727	CAGTGACGTCACGC
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	42	-	15.1571	4.41e-06	0.0727	CAGTGACGTCACGC
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	42	-	15.1571	4.41e-06	0.0727	CAGTGACGTCACGC
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	42	-	15.1571	4.41e-06	0.0727	CAGTGACGTCACGC
ELK4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	45	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	68	78	+	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	70	80	+	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	71	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	71	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	71	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	71	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	72	82	+	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	72	82	+	15.0364	4.41e-06	0.0236	CAACTTCCGGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	80	-	15.0364	4.41e-06	0.0236	CAACTTCCGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	14.8276	4.42e-06	0.133	CTCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	14.8276	4.42e-06	0.133	CTCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	14.8276	4.42e-06	0.133	CTCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	14.8276	4.42e-06	0.133	CTCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	14.8276	4.42e-06	0.133	CTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	14.9455	4.42e-06	0.137	CTCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	14.9455	4.42e-06	0.137	CTCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	14.9455	4.42e-06	0.137	CTCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	14.9455	4.42e-06	0.137	CTCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	14.9455	4.42e-06	0.137	CTCACGTGAC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	5	14	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	5	14	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	5	14	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	5	14	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	5	14	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	6	15	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	15	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	1	10	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	4	13	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	23	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	23	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	23	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	23	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	8	17	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	15	24	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	17	26	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	27	36	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	27	36	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	27	36	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	27	36	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	30	39	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	42	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	34	43	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	26	35	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	26	35	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	36	45	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	39	48	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	30	39	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	32	41	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	42	51	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	51	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	51	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	33	42	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	36	45	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	46	55	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	69	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	56	65	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	68	77	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	68	77	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	78	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	62	71	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	64	73	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	73	82	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	64	73	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	70	79	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	70	79	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	70	79	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	72	81	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	72	81	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	72	81	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	72	81	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	73	82	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	79	88	-	15.2653	4.42e-06	0.00432	GCCACGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	98	+	15.2653	4.42e-06	0.00432	GCCACGCCCC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	87	100	-	14.7887	4.42e-06	0.0754	AGAATGGGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	87	100	-	14.7887	4.42e-06	0.0754	AGAATGGGGAAGTT
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	63	76	+	10.2545	4.42e-06	0.144	GGGGTCGAAGGGCA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	63	76	+	10.2545	4.42e-06	0.144	GGGGTCGAAGGGCA
ESR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	34	50	+	10.0303	4.42e-06	0.264	GGGGGCGCCCTGACCCC
EGR1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	17	+	15.0769	4.42e-06	0.00476	GCCCCGCCCCTGCA
EGR1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	5	18	-	15.0769	4.42e-06	0.00476	ATCCCACCCCCACC
EGR1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	13	26	-	15.0769	4.42e-06	0.00476	GCCCCGCCCCTGCA
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	56	69	+	15.0769	4.42e-06	0.00476	CCCCAGCCCCCACC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	46	59	-	15.0769	4.42e-06	0.00476	CCCCAGCCCCCACC
EGR1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	102	+	15.0769	4.42e-06	0.00476	GCCCCGCCCCTGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	98	111	-	15.0769	4.42e-06	0.00476	GCCCCGCCCCTGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	98	111	-	15.0769	4.42e-06	0.00476	GCCCCGCCCCTGCA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	79	+	14.8387	4.42e-06	0.101	GAGGGCGGGGGGGCGTGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	79	+	14.8387	4.42e-06	0.101	GAGGGCGGGGGGGCGTGGC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	90	108	+	14.8387	4.42e-06	0.101	ATGCGCAGCGGGGCCTGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	24	-	14.8387	4.42e-06	0.101	GAGGGCGGGGGGGCGTGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	60	-	14.8387	4.42e-06	0.101	GAGGGCGGGGGGGCGTGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	60	-	14.8387	4.42e-06	0.101	GAGGGCGGGGGGGCGTGGC
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	70	+	15.8909	4.43e-06	0.606	ATCAGCTGTT
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	70	+	15.8909	4.43e-06	0.606	ATCAGCTGTT
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	33	46	+	13.2245	4.44e-06	0.0582	GTGGGTCAAGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	33	46	+	13.2245	4.44e-06	0.0582	GTGGGTCAAGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	69	82	-	13.2245	4.44e-06	0.0582	GTGGGTCAAGGGGA
Zfx	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	65	78	-	15.2424	4.44e-06	0.0128	CAGCCCGAGGCCTG
SOX8	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	91	106	-	0.393939	4.44e-06	1	TACAGCATGCAGTGTT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	6	26	-	14.4694	4.45e-06	0.00387	AGGGGCGGAGGGAGGGGAACG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	69	89	-	14.4694	4.45e-06	0.00387	GAAAGAAGAGAAGGGAGGAGG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	+	13.2931	4.45e-06	0.0543	GGTTACCATGGAATCC
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	+	13.2931	4.45e-06	0.0543	GGTTACCATGGAATCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	28	42	+	15.0862	4.45e-06	0.00249	GGCCCGCCTCCGGGA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	28	42	+	15.0862	4.45e-06	0.00249	GGCCCGCCTCCGGGA
SP2	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	44	+	15.0862	4.45e-06	0.00249	GCCCCTCCCCCAGCA
SP2	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	19	33	-	15.0862	4.45e-06	0.00249	GCCCCTCCCTCTGCT
SP2	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	43	57	+	15.0862	4.45e-06	0.00249	GGCCCGCCCTCCCAT
SP2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	38	52	-	15.0862	4.45e-06	0.00249	GCCCCTCCCCCAGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	66	80	+	15.0862	4.45e-06	0.00249	GTCCCTCCTCCTCTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	66	80	+	15.0862	4.45e-06	0.00249	GTCCCTCCTCCTCTG
SP2	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	96	+	15.0862	4.45e-06	0.00249	GCCCCTCCCTCTGCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	25	38	+	13.5745	4.45e-06	0.0778	ACCCCCCTGCTGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	25	38	+	13.5745	4.45e-06	0.0778	ACCCCCCTGCTGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	25	38	+	13.5745	4.45e-06	0.0778	ACCCCCCTGCTGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	25	38	+	13.5745	4.45e-06	0.0778	ACCCCCCTGCTGGG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	5	17	+	14.7241	4.46e-06	0.0804	AACAAGGAAGTAA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	5	17	+	14.7241	4.46e-06	0.0804	AACAAGGAAGTAA
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	24	42	-	14.7742	4.46e-06	0.671	TGCCCTGGAGTAGACTAGC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	24	42	-	14.7742	4.46e-06	0.671	TGCCCTGGAGTAGACTAGC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	24	42	-	14.7742	4.46e-06	0.671	TGCCCTGGAGTAGACTAGC
EHF	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	59	70	+	15.1475	4.47e-06	0.0691	AACCAGGAAGTT
ZIC3	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	12	26	-	14.2714	4.47e-06	0.0815	GCCTCCCTGCCGCGC
ZIC3	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	89	103	+	14.2714	4.47e-06	0.0815	GCCTCCCTGCCGCGC
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	39	49	-	15.3077	4.47e-06	0.172	GGGATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	79	89	-	15.3077	4.47e-06	0.172	GGGATGAGTCA
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	-	16.1429	4.47e-06	0.597	ATTACGCAAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	-	15.5577	4.47e-06	0.765	ATTACGCAAC
Crem	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	36	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	38	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	71	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	80	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	80	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	80	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	80	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	80	+	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	85	+	14.4754	4.47e-06	0.126	GATGACGTCA
Sox6	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	2	11	-	15.0429	4.47e-06	0.454	CCATTGTTTT
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	26	36	+	15.3077	4.47e-06	0.172	GGGATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	66	76	+	15.3077	4.47e-06	0.172	GGGATGAGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	27	36	-	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	30	39	-	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	31	40	-	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	44	53	-	14.4754	4.47e-06	0.126	GATGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	79	88	-	14.4754	4.47e-06	0.126	GATGACGTCA
ATF7	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	20	33	-	15.1286	4.47e-06	0.0727	GTGTGACGTCACCT
ATF7	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	82	95	+	15.1286	4.47e-06	0.0727	GTGTGACGTCACCT
PKNOX2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	2	13	-	11.6557	4.48e-06	0.467	TGACATGTGTGA
PKNOX2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	102	113	+	11.6557	4.48e-06	0.467	TGACATGTGTGA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	26	+	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	26	+	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	57	67	-	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	57	67	-	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	57	67	-	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	57	67	-	15.2115	4.48e-06	0.00311	ACCCCGCCCCT
EGR1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	19	+	15.0577	4.49e-06	0.0048	TCCCCGCCCCCAGG
EGR1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	43	56	-	15.0577	4.49e-06	0.0048	GCGCCGCCGCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	59	72	+	15.0577	4.49e-06	0.0048	GCGCCGCCGCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	96	109	-	15.0577	4.49e-06	0.0048	TCCCCGCCCCCAGG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	-	15.1273	4.49e-06	0.0525	AGCCCGAGGCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	6	19	+	14.8793	4.49e-06	0.0125	GGACCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	6	19	+	14.8793	4.49e-06	0.0125	GGACCCGCCCCCAC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	10	21	+	14.8026	4.49e-06	0.0125	ACCACGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	58	+	14.8026	4.49e-06	0.0125	ACCACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	58	+	14.8026	4.49e-06	0.0125	ACCACGCCCCGC
SP8	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	57	68	-	14.8026	4.49e-06	0.0125	ACCACGCCCCGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	-	15.2979	4.49e-06	0.132	GCTGAGTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	+	15.2979	4.49e-06	0.132	GCTGAGTCATG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	73	87	+	14.9615	4.49e-06	0.235	GCGGGTCAGAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	73	87	+	14.9615	4.49e-06	0.235	GCGGGTCAGAGTTCA
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	11	+	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	11	+	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	16	+	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	9	19	-	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	98	+	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	106	+	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	99	109	-	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	99	109	-	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
Tcf12	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	104	114	-	14.9592	4.5e-06	0.0832	GGCAGCTGCGG
IRF7	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	75	88	-	14.7419	4.5e-06	0.341	AGGAAACTGAAACT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	15.3077	4.5e-06	0.1	GGCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	15.3077	4.5e-06	0.1	GGCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	15.3077	4.5e-06	0.1	ATCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	15.3077	4.5e-06	0.1	ATCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	15.3077	4.5e-06	0.1	GGCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	15.3077	4.5e-06	0.1	GGCACGTGCC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	70	81	+	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	70	81	+	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	70	81	+	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	70	81	+	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	82	-	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	82	-	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	82	-	14.9836	4.5e-06	0.0492	GACCCGGAAGCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	+	14.4286	4.5e-06	0.0857	TGCCCGAGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	+	14.4286	4.5e-06	0.0857	TGCCCGAGGGGA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	+	14.4286	4.5e-06	0.0857	CGCCCCAAGGCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	-	14.4286	4.5e-06	0.0857	CGCCCCAAGGCG
SP2	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	3	17	+	15.069	4.5e-06	0.00252	GCTCCGCCTACCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	52	66	+	15.069	4.5e-06	0.00252	TTCCCACCCCTTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	43	57	-	15.069	4.5e-06	0.00252	GCCCCTCCCCACCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	52	66	-	15.069	4.5e-06	0.00252	CCCCCTCCCCCCTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	52	66	-	15.069	4.5e-06	0.00252	CCCCCTCCCCCCTCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	4	24	+	14.449	4.5e-06	0.00391	GGAGAAGAGGAGTGGAGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	72	92	-	14.449	4.5e-06	0.00391	GGAGGCGGAAGACGGGGTAAA
TFE3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	13.8163	4.51e-06	0.046	AGCACGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	13.8163	4.51e-06	0.046	AGCACGTGAC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	55	66	-	15.0429	4.51e-06	0.217	TGCGCCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	55	66	-	15.0429	4.51e-06	0.217	TGCGCCCACCCA
ETV2	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	73	83	+	15.4262	4.51e-06	0.118	TACCGGAAGTA
ETV2	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	19	-	15.4262	4.51e-06	0.118	TACCGGAAGTA
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	77	90	-	14.8548	4.51e-06	0.134	CTTCCTGGAATGGA
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	77	90	-	14.8548	4.51e-06	0.134	CTTCCTGGAATGGA
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	97	110	-	14.8548	4.51e-06	0.134	CTTCCTGGAATGGA
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	97	110	-	14.8548	4.51e-06	0.134	CTTCCTGGAATGGA
YY1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	17	28	-	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	87	98	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	87	98	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	93	104	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	93	104	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	93	104	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	93	104	+	15.1731	4.51e-06	0.0396	GAAGATGGCGGA
Klf12	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	31	45	-	14.5082	4.52e-06	0.0271	TGCCACACCCACCCT
Klf12	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	70	84	+	14.5082	4.52e-06	0.0271	TGCCACACCCACCCT
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	31	45	+	14.7714	4.53e-06	0.0744	CGAGGTGGGGGGGCA
MEF2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	8	22	-	14.9492	4.53e-06	0.462	TTTCCAAAAATAACT
MEF2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	8	22	-	14.9492	4.53e-06	0.462	TTTCCAAAAATAACT
JUND	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	30	40	-	15.7872	4.53e-06	0.113	AGTGAGTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	31	41	-	15.7872	4.53e-06	0.113	AGTGAGTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	66	76	+	15.7872	4.53e-06	0.113	AGTGAGTCATG
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	8	21	+	15.8989	4.53e-06	0.464	AAGAACTAGGTCAC
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	8	21	+	15.8989	4.53e-06	0.464	AAGAACTAGGTCAC
USF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	7	17	-	15.2041	4.53e-06	0.045	GCCATGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	7	17	-	15.2041	4.53e-06	0.045	GCCATGTGACA
MAFG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	5	25	+	14.5612	4.53e-06	0.486	CCAGGGCTGACTCAGCACCTT
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	5	25	+	14.5612	4.53e-06	0.486	CCAGGGCTGACTCAGCACCTT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	91	-	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	91	-	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	33	+	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	58	+	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	58	+	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	106	+	15.2857	4.53e-06	0.14	GGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	106	+	15.2857	4.53e-06	0.14	GGCAGCTGCT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	15.8077	4.53e-06	0.0558	CTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	15.8077	4.53e-06	0.0558	CTCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	15.8077	4.53e-06	0.0558	CTCACGTGAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	15.8077	4.53e-06	0.0558	CTCACGTGAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	15.8077	4.53e-06	0.0558	CTCACGTGAC
ELF3	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	62	74	-	14.6897	4.54e-06	0.0804	ACCCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	41	53	+	14.6897	4.54e-06	0.0804	ACCCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	41	53	+	14.6897	4.54e-06	0.0804	ACCCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	41	53	+	14.6897	4.54e-06	0.0804	ACCCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	41	53	+	14.6897	4.54e-06	0.0804	ACCCCGGAAGTGA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	32	44	+	15.5517	4.54e-06	0.325	CTGATTTGCATGA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	28	40	-	15.5517	4.54e-06	0.325	CTGATTTGCATGA
EN2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	12.2712	4.54e-06	1	GCCAATTACC
EN2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	12.2712	4.54e-06	1	GCCAATTACC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	24	38	+	15.3269	4.55e-06	0.0554	GGCCCAGCCAATCGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	24	38	+	15.3269	4.55e-06	0.0554	GGCCCAGCCAATCGG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	24	38	+	15.3269	4.55e-06	0.0554	GGCCCAGCCAATCGG
NFYB	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	58	72	+	15.3269	4.55e-06	0.0554	CGGGCGACCAATCAG
NFYB	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	8	22	-	15.3269	4.55e-06	0.0554	GGCCCAGCCAATCGG
NFYB	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	43	57	-	15.3269	4.55e-06	0.0554	CGGGCGACCAATCAG
FOXH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	72	82	+	15.3462	4.55e-06	1	GGGAATCCACA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	66	80	+	14.4865	4.55e-06	0.124	CGGGGTGAAGGGTCA
Myod1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	13	+	14.9796	4.55e-06	0.0746	CGCAGCTGCTCTT
Myod1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	33	+	14.9796	4.55e-06	0.0746	CGCAGCTGCTCTT
Myod1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	82	94	-	14.9796	4.55e-06	0.0746	CGCAGCTGCTCTT
Myod1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	102	114	-	14.9796	4.55e-06	0.0746	CGCAGCTGCTCTT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	10	20	+	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	10	20	+	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	10	20	+	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	10	20	+	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	33	-	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	82	92	+	14.9636	4.55e-06	0.0236	CGACTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	105	-	14.9636	4.55e-06	0.0236	CGACTTCCGGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	52	66	+	14.7571	4.55e-06	0.0744	CCAGGGCAGGGTTCA
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	13	27	-	13.8621	4.56e-06	0.0236	TCCCGCCCCCGCCGC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	12	-	14.9672	4.56e-06	0.0492	AAGCCGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	12	-	14.9672	4.56e-06	0.0492	AAGCCGGAAGTT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	42	56	+	14.8636	4.56e-06	0.143	CACGGTGAGTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	29	43	-	14.8636	4.56e-06	0.143	TACTGTGACTCAGCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	29	43	-	14.8636	4.56e-06	0.143	TACTGTGACTCAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	29	43	-	14.8636	4.56e-06	0.143	TACTGTGACTCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	29	43	-	14.8636	4.56e-06	0.143	TACTGTGACTCAGCT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	81	92	+	15.0364	4.56e-06	0.0524	ACACCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	81	92	+	15.0364	4.56e-06	0.0524	ACACCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	81	92	+	15.0364	4.56e-06	0.0524	ACACCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	81	92	+	15.0364	4.56e-06	0.0524	ACACCGGAAGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	29	49	+	14.4286	4.56e-06	0.00392	CAAGGAGGGGCGAGAGGGTGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	32	52	+	14.4286	4.56e-06	0.00392	GGGGCAGGGCTAAGGAGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	51	71	+	14.4286	4.56e-06	0.00392	GAGGGAAGAGTGACAGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	51	71	+	14.4286	4.56e-06	0.00392	GAGGGAAGAGTGACAGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	51	71	+	14.4286	4.56e-06	0.00392	GAGGGAAGAGTGACAGAGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	7	27	-	14.4286	4.56e-06	0.00392	GAGGGAAGAGTGACAGAGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	63	83	-	14.4286	4.56e-06	0.00392	GGGGCAGGGCTAAGGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	91	111	-	14.4286	4.56e-06	0.00392	GGAGCATCGAGGAGCGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	91	111	-	14.4286	4.56e-06	0.00392	GGAGCATCGAGGAGCGGGAGG
SP2	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	26	40	-	15.0517	4.56e-06	0.00254	GCCCCGCCCACTATG
SP2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	69	+	15.0517	4.56e-06	0.00254	GCCCCACCCACTCCT
SP2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	46	60	-	15.0517	4.56e-06	0.00254	GCCCCACCCACTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	61	75	+	15.0517	4.56e-06	0.00254	CCCCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	61	75	+	15.0517	4.56e-06	0.00254	CCCCCTCCTCCTCCT
Klf12	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	13	27	-	14.4918	4.56e-06	0.0271	GGCCCCGCCCACCAG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	38	52	-	14.4918	4.56e-06	0.0271	GGCCCCGCCCACCAG
Klf12	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	74	88	-	14.4918	4.56e-06	0.0271	GGCCCCGCCCACCAG
Klf12	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	27	41	+	14.4918	4.56e-06	0.0271	GGCCCCGCCCACCAG
Klf12	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	88	102	+	14.4918	4.56e-06	0.0271	GGCCCCGCCCACCAG
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	96	109	+	14.5263	4.57e-06	0.557	TTAACAGCTGTCCT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	40	-	15.3673	4.57e-06	0.0942	TGATGACTCAT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	12	25	+	14.8448	4.57e-06	0.0125	GACCCCGCCCCCAA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	12	25	+	14.8448	4.57e-06	0.0125	GACCCCGCCCCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	12	25	+	14.8448	4.57e-06	0.0125	GACCCCGCCCCCAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	12	25	+	14.8448	4.57e-06	0.0125	GACCCCGCCCCCAA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	20	-	15.0656	4.57e-06	0.0691	CACCCGGAAATG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	20	-	15.0656	4.57e-06	0.0691	CACCCGGAAATG
EHF	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	26	37	+	15.0656	4.57e-06	0.0691	AACCCGGAAGAA
EHF	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	78	89	-	15.0656	4.57e-06	0.0691	AACCCGGAAGAA
SP8	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	9	20	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	11	22	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	41	52	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	33	44	-	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	44	55	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	47	58	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	55	66	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	55	66	+	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	57	68	-	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	60	71	-	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	63	74	-	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	95	106	-	14.7763	4.57e-06	0.0125	GCCCCCCCCCCC
BATF3	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	2	15	+	10.5152	4.57e-06	0.0894	TTATGACGTCACAG
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	37	50	-	10.5152	4.57e-06	0.0894	TTATGACGTCACAG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	37	50	-	10.5152	4.57e-06	0.0894	TTATGACGTCACAG
BATF3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	65	78	+	10.5152	4.57e-06	0.0894	TTATGACGTCACAG
BATF3	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	100	113	-	10.5152	4.57e-06	0.0894	TTATGACGTCACAG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	16	26	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	19	29	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	15	25	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	29	39	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	55	65	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	55	65	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	46	56	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	59	69	+	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	50	60	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	62	72	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	62	72	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	62	72	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	62	72	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	62	72	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	64	74	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	91	101	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	91	101	-	15.3636	4.57e-06	0.00405	GCGCGCGCGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	58	75	-	-2.07895	4.57e-06	0.0179	GGAAGGGAGGCACCTAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	58	75	-	-2.07895	4.57e-06	0.0179	GGAAGGGAGGCACCTAAG
SCRT1	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	62	76	+	14.6721	4.57e-06	0.494	ATGCAACAAGTAGTA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	4	14	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	4	14	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	7	17	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	7	17	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	10	20	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	10	20	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	14	24	-	15.2586	4.57e-06	0.022	GGGCGGGAGCA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	14	24	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	16	26	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	18	28	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	21	31	-	15.2586	4.57e-06	0.022	GGGAGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	22	32	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	26	36	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	26	36	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	31	41	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	42	52	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	51	61	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	58	68	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	63	73	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	63	73	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	64	74	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	67	77	-	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	1	11	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	1	11	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	1	11	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	1	11	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	1	11	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	7	17	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	7	17	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	20	30	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	38	48	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	47	57	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	70	80	+	15.2586	4.57e-06	0.022	GGGCGGGAGCA
E2F6	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	84	94	+	15.2586	4.57e-06	0.022	GGGAGGGAAGC
E2F6	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	89	99	+	15.2586	4.57e-06	0.022	GGGAGGGAGGG
Myb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	22	31	-	15.0656	4.58e-06	0.399	CTAACTGCCA
Myb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	22	31	-	15.0656	4.58e-06	0.399	CTAACTGCCA
TFEC	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	14	4.58e-06	0.129	ATCACGTGAG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	23	32	-	12.8065	4.58e-06	0.627	CACATTCCAG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	23	32	-	12.8065	4.58e-06	0.627	CACATTCCAG
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	67	76	-	12.8065	4.58e-06	0.627	CACATTCCAG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	88	97	-	12.8065	4.58e-06	0.627	CACATTCCAG
TFEC	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	14	4.58e-06	0.129	ATCACGTGAG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	98	107	+	12.8065	4.58e-06	0.627	CACATTCCAG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	98	107	+	12.8065	4.58e-06	0.627	CACATTCCAG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	-	15.3607	4.58e-06	0.0537	GGCCCCTAGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	37	50	-	13.1429	4.58e-06	0.0582	GGGGCGCAGAGGGA
HEY1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	14.6	4.6e-06	0.0969	CCCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	14.6	4.6e-06	0.0969	CCCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	14.6	4.6e-06	0.0969	CCCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	14.6	4.6e-06	0.0969	CCCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	14.6	4.6e-06	0.0969	CCCACGTGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	45	55	-	15.3448	4.6e-06	0.0205	CGGCGGGAAAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	45	55	-	15.3448	4.6e-06	0.0205	CGGCGGGAAAA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	45	55	-	15.3448	4.6e-06	0.0205	CGGCGGGAAAA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	45	55	-	15.3448	4.6e-06	0.0205	CGGCGGGAAAA
EGR4	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	35	50	+	14.7455	4.61e-06	0.0258	TCCCGCCCCCCCTCTT
EGR4	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	65	80	-	14.7455	4.61e-06	0.0258	TCCCGCCCCCCCTCTT
SP4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	54	70	-	12.4182	4.61e-06	0.0071	CTGGCCCCACCCCCTGC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	24	+	14.2143	4.61e-06	0.0815	CCCCCCCCACCGTGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	88	105	-	-2.17105	4.61e-06	0.0179	GGAAGGGGACGAGGAAAG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	11	20	+	15.2202	4.62e-06	0.0187	ACCCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	11	20	+	15.2202	4.62e-06	0.0187	ACCCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	74	83	-	15.2202	4.62e-06	0.0187	ACCCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	74	83	-	15.2202	4.62e-06	0.0187	ACCCCCCCAT
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	75	85	+	15.0984	4.62e-06	0.0193	CCGGAAGTACC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	7	17	-	15.0984	4.62e-06	0.0193	CCGGAAGTACC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	30	40	-	15.0984	4.62e-06	0.0193	CCGGAAGTAGG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	30	40	-	15.0984	4.62e-06	0.0193	CCGGAAGTAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	30	40	-	15.0984	4.62e-06	0.0193	CCGGAAGTAGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	30	40	-	15.0984	4.62e-06	0.0193	CCGGAAGTAGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	30	40	-	15.0984	4.62e-06	0.0193	CCGGAAGTAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	2	22	+	14.4082	4.62e-06	0.00395	AAAGAAGGAAGAAGGAGTGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	9	29	+	14.4082	4.62e-06	0.00395	GGAGGCGGGAGCCGGGAAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	17	37	-	14.4082	4.62e-06	0.00395	GGAGGGAGGAAGGGAGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	39	59	-	14.4082	4.62e-06	0.00395	GGGGAAGAAGGAGACGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	39	59	-	14.4082	4.62e-06	0.00395	GGGGAAGAAGGAGACGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	81	101	-	14.4082	4.62e-06	0.00395	AAAGAAGGAAGAAGGAGTGGG
Gata1	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	75	85	+	14.8776	4.62e-06	0.687	CCCTTATCTGC
SP2	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	11	25	-	15.0345	4.62e-06	0.00256	CCCCCGCCCCGCGCT
SP2	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	13	27	-	15.0345	4.62e-06	0.00256	CCTCCGCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	64	+	15.0345	4.62e-06	0.00256	GCCCCTCCCCGGGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	64	+	15.0345	4.62e-06	0.00256	GCCCCTCCCCGGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	64	+	15.0345	4.62e-06	0.00256	GCCCCTCCCCGGGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	64	+	15.0345	4.62e-06	0.00256	GCCCCTCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	+	15.1091	4.62e-06	0.0531	AGCCTCAGGCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	23	40	-	-2.19737	4.63e-06	0.0179	GAAAGGGGGGGGGGAAAG
NFATC3	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	51	60	+	12.4949	4.63e-06	0.908	ATTTTCCGTT
NFATC3	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	55	64	-	12.4949	4.63e-06	0.908	ATTTTCCGTT
TP53	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	-	13.2041	4.63e-06	0.335	AACAAGTCTCAACTTGTC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	37	+	14.9592	4.63e-06	0.0746	GCCAGCTGTCGCG
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	26	38	-	14.9592	4.63e-06	0.0746	GCCAGCTGTCGCG
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	16	27	+	15.6	4.64e-06	0.731	GAACATATGCTT
BHLHE23	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	16	27	+	15.6	4.64e-06	0.731	GAACATATGCTT
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	16	27	+	15.6	4.64e-06	0.731	GAACATATGCTT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	75	92	-	-2.22368	4.64e-06	0.0179	GGCAGGCAGGCAGGCAGC
Tcf21	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	9	22	-	14.5	4.64e-06	0.557	TTACCAGCTGTTGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	39	-	14.8364	4.64e-06	0.0966	CGCCCCCCGCGGGCC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	42	52	+	14.0517	4.64e-06	0.215	ATCTGTGGTTT
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	29	40	-	14.58	4.65e-06	0.624	TATATGCAAATC
SP8	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	41	52	+	14.7632	4.65e-06	0.0126	CCCACTCCCCCC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	12	29	+	12.7241	4.66e-06	0.0601	AGGCCACGCCCCCACCCC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	12	29	+	12.7241	4.66e-06	0.0601	AGGCCACGCCCCCACCCC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	12	29	+	12.7241	4.66e-06	0.0601	AGGCCACGCCCCCACCCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	12	29	+	12.7241	4.66e-06	0.0601	AGGCCACGCCCCCACCCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	26	39	-	15	4.66e-06	0.00497	GCCCCGCCCACATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	26	39	-	15	4.66e-06	0.00497	GCCCCGCCCACATC
SCRT2	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	62	74	+	14.4918	4.66e-06	0.673	ATGCAACAAGTAG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	38	51	+	13.1122	4.66e-06	0.0582	GGGGCGGAGAGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	75	88	-	13.1122	4.66e-06	0.0582	GGGGCGGAGAGGGG
CTCF	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	28	46	-	14.2295	4.66e-06	0.0465	CCACCTGTAGGGGGCTCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	25	40	-	14.7273	4.66e-06	0.0258	CACCGCCCGCGCACGC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	25	40	-	14.7273	4.66e-06	0.0258	CACCGCCCGCGCACGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	52	67	+	14.7273	4.66e-06	0.0258	CCCCGCCCCCGCGCGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	41	56	-	14.7273	4.66e-06	0.0258	CCCCGCCCCCGCGCGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	41	56	-	14.7273	4.66e-06	0.0258	CCCCGCCCCCGCGCGG
EGR4	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	75	90	+	14.7273	4.66e-06	0.0258	CACCGCCCGCGCACGC
ATF4	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	51	63	-	15.3443	4.67e-06	0.241	GGCTGACGCAAGA
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	62	71	-	15.8776	4.67e-06	0.15	CGGAATTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	62	71	-	15.8776	4.67e-06	0.15	CGGAATTTCC
ELK3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	14.8793	4.67e-06	0.0475	GCCGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	14.8793	4.67e-06	0.0475	GCCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	14.8793	4.67e-06	0.0475	GCCGGAAGTA
ELK3	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	14.8793	4.67e-06	0.0475	GCCGGAAGTA
ELK1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	15.5532	4.67e-06	0.0372	GCCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	15.5532	4.67e-06	0.0372	GCCGGAAGTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	15.5532	4.67e-06	0.0372	GCCGGAAGTA
ELK1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	15.5532	4.67e-06	0.0372	GCCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.6479	4.67e-06	0.0449	GCCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	14.4364	4.67e-06	0.0567	ACCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	14.4364	4.67e-06	0.0567	ACCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	14.8793	4.67e-06	0.0475	GCCGGAAGTA
ELK1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	15.5532	4.67e-06	0.0372	GCCGGAAGTA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	+	15.3279	4.67e-06	0.0537	TCCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	-	15.3279	4.67e-06	0.0537	TCCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	-	15.3279	4.67e-06	0.0537	TCCCCTCGGGGCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	12	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	12	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	12	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	3	13	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	3	13	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	26	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	33	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	33	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	33	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	35	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	35	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	35	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	35	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	15	25	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	36	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	18	28	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	20	30	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	44	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	44	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	36	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	30	40	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	30	40	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	33	43	-	15.1538	4.67e-06	0.00315	GTCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	33	43	-	15.1538	4.67e-06	0.00315	GTCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	33	43	-	15.1538	4.67e-06	0.00315	GTCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	45	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	45	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	41	51	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	65	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	74	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	89	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	97	+	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	82	92	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	89	99	-	15.1538	4.67e-06	0.00315	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	34	44	+	14.4553	4.67e-06	0.00833	CCCACGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	34	44	+	14.4553	4.67e-06	0.00833	CCCACGCCTCC
TP53	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	30	47	+	13.1837	4.67e-06	0.335	GACAAGTTGAGACTTGTT
HNF4G	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	8	22	+	14.9038	4.68e-06	0.235	GGATTTCAAAGTCCA
HNF4G	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	93	107	-	14.9038	4.68e-06	0.235	GGATTTCAAAGTCCA
POU1F1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	13	26	+	14.8276	4.68e-06	0.835	ATTATGCAAAGGAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	6	26	+	14.3878	4.68e-06	0.00395	GGAGGACGCTGGAGGAGGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	19	39	+	14.3878	4.68e-06	0.00395	GGGGAAGGCGGAGGGATGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	66	86	+	14.3878	4.68e-06	0.00395	GGGGGCGGGGGGGCGAGTGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	66	86	+	14.3878	4.68e-06	0.00395	GGGGGCGGGGGGGCGAGTGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	85	105	+	14.3878	4.68e-06	0.00395	GGAGGACGCTGGAGGAGGGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	2	22	-	14.3878	4.68e-06	0.00395	GGAGGAGGGAAACGGAAGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	30	-	14.3878	4.68e-06	0.00395	GGAGGACGCTGGAGGAGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	46	66	-	14.3878	4.68e-06	0.00395	TGGGGAGAGGGGTGGGGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	46	66	-	14.3878	4.68e-06	0.00395	TGGGGAGAGGGGTGGGGGTGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	72	92	-	14.3878	4.68e-06	0.00395	GGAGGTGGGAGAGGAAGTTAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	75	95	-	14.3878	4.68e-06	0.00395	GGGGGACAGCAGAGAGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	75	95	-	14.3878	4.68e-06	0.00395	GGGGGACAGCAGAGAGGAAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	109	-	14.3878	4.68e-06	0.00395	GGAGGACGCTGGAGGAGGGGC
IRF2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	16	33	+	12.633	4.68e-06	0.31	GGAAAACGTAAGTGAAAC
IRF2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	82	99	-	12.633	4.68e-06	0.31	GGAAAACGTAAGTGAAAC
BATF3	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	41	54	-	10.4545	4.68e-06	0.0894	TGATGACGTCAAAC
BATF3	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	61	74	+	10.4545	4.68e-06	0.0894	TGATGACGTCAAAC
SP8	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	20	31	+	14.7368	4.68e-06	0.0126	ACCACGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	26	37	-	14.7368	4.68e-06	0.0126	ACCACGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	26	37	-	14.7368	4.68e-06	0.0126	ACCACGCCCAGC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	50	64	+	15.0172	4.68e-06	0.00259	CCTCCTCCCCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	74	+	15.0172	4.68e-06	0.00259	ACCCCGCCCCCATCT
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	51	65	-	15.0172	4.68e-06	0.00259	CCTCCTCCCCCTCCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	4	21	+	12.7069	4.69e-06	0.0601	CTGCCACGCCCCCCCCCC
KLF13	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	34	51	+	12.7069	4.69e-06	0.0601	CTGCCACGCCCCCCCCCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	40	57	+	12.7069	4.69e-06	0.0601	CTGCCACGCCCCCCCCCC
KLF13	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	58	75	-	12.7069	4.69e-06	0.0601	CTGCCACGCCCCCCCCCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	64	81	-	12.7069	4.69e-06	0.0601	CTGCCACGCCCCCCCCCC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	22	32	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	22	32	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	22	32	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	22	32	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	55	65	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	55	65	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	55	65	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	55	65	+	15.2069	4.69e-06	0.022	GCGCGGGAAGG
REL	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	40	49	+	14.1212	4.69e-06	0.145	GGGGAATTCC
REL	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	66	75	-	14.1212	4.69e-06	0.145	GGGGAATTCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	54	68	-	14.4426	4.69e-06	0.0271	GGCCCCGCCCTGCTG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	54	68	-	14.4426	4.69e-06	0.0271	GGCCCCGCCCTGCTG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	80	-	14.8727	4.69e-06	0.0236	CTGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	80	-	14.8727	4.69e-06	0.0236	CTGCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	80	-	14.8727	4.69e-06	0.0236	CTGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	80	-	14.8727	4.69e-06	0.0236	CTGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	80	-	14.8727	4.69e-06	0.0236	CTGCTTCCGGC
ELF5	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	61	71	+	13.9818	4.69e-06	0.0858	ATCCGGAAGTG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	74	84	+	13.9818	4.69e-06	0.0858	ATCCGGAAGTG
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	-	13.1724	4.69e-06	0.0543	GGTTGTCCTGGTAACA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	+	15.1967	4.69e-06	0.0404	TGCCGGCGGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	+	15.1967	4.69e-06	0.0404	TGCCGGCGGGGCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	-	11.4694	4.7e-06	0.428	TGCCAGCTGTCA
PKNOX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	-	11.4694	4.7e-06	0.428	TGCCAGCTGTCA
NHLH1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	-	15.0517	4.71e-06	0.0695	CGCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	+	15.0517	4.71e-06	0.0695	CGCAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	+	15.0517	4.71e-06	0.0695	CGCAGCTGTG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	+	15.0517	4.71e-06	0.0695	CGCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	+	15.0517	4.71e-06	0.0695	CGCAGCTGTG
HEY2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	14.8966	4.71e-06	0.112	GTCACGTGCC
HEY2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	14.8966	4.71e-06	0.112	GTCACGTGCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	34	44	-	14.9388	4.71e-06	0.061	GGCAGCTGGTG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	34	44	-	14.9388	4.71e-06	0.061	GGCAGCTGGTG
MIXL1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.6458	4.71e-06	1	GCCAATTAGC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	7	20	+	14.9808	4.71e-06	0.005	CCCCTGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	22	35	-	14.9808	4.71e-06	0.005	GCCCCGCCGCCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	65	78	-	14.9808	4.71e-06	0.005	CCTCCTCCTCCGCG
EGR1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	95	108	-	14.9808	4.71e-06	0.005	CCCCTGCCCCCGGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	12	25	-	14.7931	4.71e-06	0.0127	AGCCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	12	25	-	14.7931	4.71e-06	0.0127	AGCCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	69	82	-	14.7931	4.71e-06	0.0127	AGCCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	69	82	-	14.7931	4.71e-06	0.0127	AGCCCCGCCCCTCC
ZIC3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	18	32	+	14.1714	4.73e-06	0.0815	CCCGCCCCGCGGCGC
ZIC3	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	12	26	-	14.1714	4.73e-06	0.0815	CCCGCCCCGCGGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	89	103	+	14.1714	4.73e-06	0.0815	CCCGCCCCGCGGCGC
ZIC3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	83	97	-	14.1714	4.73e-06	0.0815	CCCGCCCCGCGGCGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	70	87	+	-2.40789	4.73e-06	0.0179	GGAGGAGGGGAAGCAGAG
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	64	76	-	14.69	4.73e-06	1	GTTATGCAAATGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	25	41	-	12.3455	4.74e-06	0.00724	CGCGCCCCGCCCCCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	25	41	-	12.3455	4.74e-06	0.00724	CGCGCCCCGCCCCCAGC
SP4	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	74	90	+	12.3455	4.74e-06	0.00724	CGCGCCCCGCCCCCAGC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	+	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	+	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	-	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	-	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	-	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	-	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	-	14.5455	4.74e-06	0.054	CGCCCCCAGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	-	15.3276	4.74e-06	0.0426	TGCCCCGGAGGGA
HES5	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	45	+	12.8621	4.74e-06	0.165	AGGCACGTGGCA
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	81	-	12.8621	4.74e-06	0.165	AGGCACGTGGCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	81	-	12.8621	4.74e-06	0.165	AGGCACGTGGCA
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	81	-	12.8621	4.74e-06	0.165	AGGCACGTGGCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	81	-	12.8621	4.74e-06	0.165	AGGCACGTGGCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	19	39	+	14.3673	4.74e-06	0.00398	GGTGAAGGGGCGGAGAGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	41	61	+	14.3673	4.74e-06	0.00398	GGTGGCGGAGAAAGAGTAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	18	38	-	14.3673	4.74e-06	0.00398	GGGGGAGGTGGAGCCTGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	18	38	-	14.3673	4.74e-06	0.00398	GGGGGAGGTGGAGCCTGGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	48	68	-	14.3673	4.74e-06	0.00398	AGAGGATCAATGGGAAGAGAA
FOS	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	54	64	-	15.2766	4.74e-06	0.132	TCTGAGTCATC
FOS	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	51	61	+	15.2766	4.74e-06	0.132	TCTGAGTCATC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	88	101	+	13.051	4.74e-06	0.0582	GGGTCGCTAGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	88	101	+	13.051	4.74e-06	0.0582	GGGTCGCTAGGGTG
SP2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	44	+	15	4.75e-06	0.00262	CCCCCTCCCCCGCCA
SP2	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	25	39	-	15	4.75e-06	0.00262	TCCCCGCCCTCCGCA
SP2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	64	+	15	4.75e-06	0.00262	CCCCCTCCCCCGCCA
SP2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	51	65	-	15	4.75e-06	0.00262	CCCCCTCCCCCGCCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	69	83	+	15	4.75e-06	0.00262	CCCCCGCCTCCCTGA
SP2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	71	85	-	15	4.75e-06	0.00262	CCCCCTCCCCCGCCA
BATF3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	22	35	-	10.4091	4.75e-06	0.0894	CGGAGACGTCATCA
BATF3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	80	93	+	10.4091	4.75e-06	0.0894	CGGAGACGTCATCA
Stat4	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	33	-	14.9828	4.75e-06	0.0952	TTGCCGGGAAGGCG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	82	95	+	14.9828	4.75e-06	0.0952	TTGCCGGGAAGGCG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	82	95	+	14.9828	4.75e-06	0.0952	TTGCCGGGAAGGCG
Stat4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	82	95	+	14.9828	4.75e-06	0.0952	TTGCCGGGAAGGCG
Stat4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	82	95	+	14.9828	4.75e-06	0.0952	TTGCCGGGAAGGCG
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	+	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
RFX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	-	14.4848	4.75e-06	0.045	TGTCTCCATGGCAGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	50	63	-	13.4255	4.76e-06	0.0778	CCCCACCCGCGGCG
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	10	23	-	14.4697	4.76e-06	0.198	ACGCCACGTGACCT
TP53	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	-	13.1429	4.76e-06	0.335	CACATGTGCGAGCATGAC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	38	58	-	14.6129	4.76e-06	0.0907	ATCCCCTTTCAGTTCCTCCTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	38	58	-	14.6129	4.76e-06	0.0907	ATCCCCTTTCAGTTCCTCCTT
SPIC	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	72	85	+	14.6901	4.77e-06	0.0785	TGAAAAGGGAAGTA
SPIC	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	30	43	-	14.6901	4.77e-06	0.0785	TGAAAAGGGAAGTA
CDX2	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	45	55	+	14.8305	4.77e-06	1	CAGCAATAAAA
Klf12	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	68	82	-	14.4098	4.77e-06	0.0271	GCCCACGCCCATCGT
Klf12	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	33	47	+	14.4098	4.77e-06	0.0271	GCCCACGCCCATCGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	34	48	+	14.4098	4.77e-06	0.0271	GGCCCCGCCCACAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	34	48	+	14.4098	4.77e-06	0.0271	GGCCCCGCCCACAGC
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	80	94	+	15.2069	4.77e-06	0.242	CTCTTCCAAAGAAGC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	80	94	+	15.2069	4.77e-06	0.242	CTCTTCCAAAGAAGC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	-	14.7273	4.78e-06	0.0397	TGCCCCAGGCT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	-	14.8727	4.78e-06	0.702	ATTACGCAAC
Hes1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	20	29	+	11.4545	4.78e-06	0.0721	CCCACGCGCC
Hes1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	39	48	+	11.4545	4.78e-06	0.0721	CCCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	95	-	11.4545	4.78e-06	0.0721	CCCACGCGCC
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	40	-	15.4	4.78e-06	0.0992	GGTGACGTCATC
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	+	13.2857	4.78e-06	0.481	TGGAACAGTTTGTCCTT
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	+	13.2857	4.78e-06	0.481	TGGAACAGTTTGTCCTT
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	-	13.2857	4.78e-06	0.481	TGGAACAGTTTGTCCTT
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	-	13.2857	4.78e-06	0.481	TGGAACAGTTTGTCCTT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	+	14.5273	4.78e-06	0.0893	CGCCCCCAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	+	14.5273	4.78e-06	0.0893	CGCCCCCAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	+	14.5273	4.78e-06	0.0893	CGCCCCCAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	+	14.5273	4.78e-06	0.0893	CGCCCCCAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	+	14.3776	4.79e-06	0.0857	CGCCCCCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	+	14.3776	4.79e-06	0.0857	CGCCCCCGGGCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	11	24	+	14.7586	4.79e-06	0.0127	CGCCACGCCCTCCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	11	24	+	14.7586	4.79e-06	0.0127	CGCCACGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	11	24	+	14.7586	4.79e-06	0.0127	CGCCACGCCCTCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	26	39	+	14.7586	4.79e-06	0.0127	CGCCACGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	26	39	+	14.7586	4.79e-06	0.0127	CGCCACGCCCTCCT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	88	106	+	14.1803	4.79e-06	0.0466	CCGCCAGTAGGCGGTGGCG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	88	106	+	14.1803	4.79e-06	0.0466	CCGCCAGTAGGCGGTGGCG
TBX19	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	30	49	-	14.4634	4.79e-06	0.415	TTTGACATCTAAATGTCATA
TBX19	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	66	85	+	14.4634	4.79e-06	0.415	TTTGACATCTAAATGTCATA
TBX19	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	66	85	+	14.4634	4.79e-06	0.415	TTTGACATCTAAATGTCATA
EGR1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	18	31	+	14.9615	4.79e-06	0.005	CCGCCTCCTCCGCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	41	+	14.9615	4.79e-06	0.005	GGCCCGCCCCCAGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	30	43	+	14.9615	4.79e-06	0.005	GCCCCGCCCCCTTT
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	20	33	-	14.9615	4.79e-06	0.005	TCTCCTCCTCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	27	40	-	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	28	41	-	14.9615	4.79e-06	0.005	AGCCCGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	28	41	-	14.9615	4.79e-06	0.005	AGCCCGCCCACTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	34	47	-	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	70	+	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	45	58	-	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	75	+	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	75	+	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	75	+	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	75	+	14.9615	4.79e-06	0.005	GCCCCGCCCCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	87	+	14.9615	4.79e-06	0.005	AGCCCGCCCACTCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	82	99	+	-2.52632	4.8e-06	0.0179	TGAAGAAGGCCAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	82	99	+	-2.52632	4.8e-06	0.0179	TGAAGAAGGCCAGGAAGA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	70	81	+	15.1818	4.8e-06	0.0872	GGGCGTCCGCGT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	1	15	-	14.1053	4.8e-06	0.0875	AGAGTGAGTCAGCTG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	1	15	-	14.1053	4.8e-06	0.0875	AGAGTGAGTCAGCTG
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	41	55	-	14.1053	4.8e-06	0.0875	TCGGCGACTCAGCAC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	26	42	-	12.3091	4.8e-06	0.00731	CACACTCCGCCCCCTCC
CREB3	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	25	38	-	14.9429	4.8e-06	0.196	AGTCCACGTCAGCG
CREB3	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	77	90	+	14.9429	4.8e-06	0.196	AGTCCACGTCAGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	87	107	-	14.3469	4.8e-06	0.00402	GGGGGAGGGGACGAGGAAAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	87	107	-	14.3469	4.8e-06	0.00402	GGGGGAGGGGACGAGGAAAGT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	+	14.5273	4.8e-06	0.054	TCCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	+	14.5273	4.8e-06	0.054	CGCCCCGGGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	-	14.5273	4.8e-06	0.054	CGCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	+	14.5273	4.8e-06	0.054	TCCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	+	14.5273	4.8e-06	0.054	TCCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	+	14.5273	4.8e-06	0.054	CGCCCCGGGGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	10	23	+	13.4043	4.81e-06	0.0778	GACGCCCCGCTGCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	52	65	+	13.4043	4.81e-06	0.0778	GACGCCCCGCTGCT
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	49	62	+	13.0204	4.81e-06	0.0582	GAGGGCCTCTGGGA
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	53	66	-	13.0204	4.81e-06	0.0582	GAGGGCCTCTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	58	71	-	13.0204	4.81e-06	0.0582	GAGGGCCTCAGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	58	71	-	13.0204	4.81e-06	0.0582	GAGGGCCTCAGGTG
INSM1	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	5	16	+	15.2755	4.81e-06	0.108	AGCCAGGGGGCG
Rfx1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	9	22	+	14.7931	4.81e-06	0.0575	GTCCCCATGGTGAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	79	92	+	14.7931	4.81e-06	0.0575	GTTTCCATGGTGAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	17	30	-	14.7931	4.81e-06	0.0575	GTTTCCATGGTGAC
Rfx1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	93	106	-	14.7931	4.81e-06	0.0575	GTCCCCATGGTGAC
SP2	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	25	39	+	14.9828	4.82e-06	0.00264	GGTCCGCCCCGCCCC
SP2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	30	44	-	14.9828	4.82e-06	0.00264	GCACCGCCCCCAGCC
SP2	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	50	64	+	14.9828	4.82e-06	0.00264	GGCCCGCCCCGCGTC
SP2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	85	+	14.9828	4.82e-06	0.00264	GCACCGCCCCCAGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	96	+	14.9828	4.82e-06	0.00264	TCCCCTCCCCCCGGG
SP2	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	76	90	-	14.9828	4.82e-06	0.00264	GGTCCGCCCCGCCCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	15	24	-	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	15	24	-	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	50	59	-	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	50	59	-	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	12	21	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	12	21	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	26	35	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	26	35	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	30	39	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	30	39	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	30	39	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	30	39	+	15.9184	4.82e-06	0.0051	AGGGTGTGGC
FOXC1	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	49	59	-	14.3	4.82e-06	1	TATGTCAATAT
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	28	38	+	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	34	44	+	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	32	42	-	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	46	56	-	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	73	83	+	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	71	81	-	15.2182	4.82e-06	0.00424	GCGCTTGCGCC
Mitf	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	24	-	12.7551	4.82e-06	0.0594	TGTCACGTGG
SOX21	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	63	77	-	10.3673	4.83e-06	1	ACCAAGGTCAGTGTT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	13	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	15	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	16	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	16	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	17	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	18	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	19	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	2	11	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	2	11	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	21	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	26	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	26	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	9	18	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	29	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	29	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	14	23	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	33	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	34	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	37	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	37	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	37	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	37	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	19	28	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	37	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	41	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	23	32	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	41	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	41	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	41	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	41	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	42	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	42	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	42	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	42	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	42	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	43	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	43	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	45	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	45	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	46	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	46	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	48	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	48	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	32	41	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	32	41	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	32	41	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	32	41	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	34	43	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	36	45	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	38	47	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	40	49	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	43	52	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	43	52	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	61	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	43	52	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	61	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	61	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	43	52	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	61	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	43	52	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	45	54	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	45	54	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	47	56	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	48	57	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	48	57	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	48	57	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	48	57	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	58	67	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	68	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	70	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	75	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	77	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	70	79	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	64	73	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	67	76	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	72	81	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	74	83	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	78	87	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	96	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	82	91	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	106	+	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	94	103	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	100	109	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	102	111	-	15.1633	4.83e-06	0.00432	TCCCCGCCCC
FEV	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	14.3654	4.83e-06	0.0647	ACCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.9429	4.83e-06	0.042	ACCGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.9429	4.83e-06	0.042	ACCGGAAGTT
FEV	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	14.3654	4.83e-06	0.0647	ACCGGAAGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	8	24	+	12.2909	4.83e-06	0.00731	GTAGCTCCGCCCCTCGC
SP4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	2	18	-	12.2909	4.83e-06	0.00731	CGCGCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	27	43	+	12.2909	4.83e-06	0.00731	TTCGCCCCGCCCCGTCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	27	43	+	12.2909	4.83e-06	0.00731	TTCGCCCCGCCCCGTCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	7	18	-	14.7105	4.83e-06	0.0129	GCCCCCCCCACC
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	97	108	+	14.7105	4.83e-06	0.0129	GCCCCCCCCACC
HNF4G	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	12	26	-	14.8654	4.84e-06	0.235	TGGAACCAAAGTCCA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	89	103	+	14.8654	4.84e-06	0.235	TGGAACCAAAGTCCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	89	103	+	14.8654	4.84e-06	0.235	TGGAACCAAAGTCCA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	+	15.2787	4.84e-06	0.0537	GGCCCCGGGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	-	15.2787	4.84e-06	0.0537	TGCCCCGGAGGGA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	-	15.2787	4.84e-06	0.0537	GGCCCCGGGGGCG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	21	31	+	14.9388	4.84e-06	0.0836	GACAGCTGCAA
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	21	31	+	14.9388	4.84e-06	0.0836	GACAGCTGCAA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	64	+	14.9388	4.84e-06	0.0836	AGCAGCTGCGG
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	46	60	+	14.9242	4.84e-06	0.104	ACAGTTTCATTTCCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	+	14.5091	4.85e-06	0.0893	TGCCCCGGGGGA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	-	14.5091	4.85e-06	0.0893	TGCCCCGGGGGA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	4	18	+	14.377	4.85e-06	0.0271	AGCCACGCCCCGTCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	4	18	+	14.377	4.85e-06	0.0271	AGCCACGCCCCGTCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	4	18	+	14.377	4.85e-06	0.0271	AGCCACGCCCCGTCT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	4	18	+	14.377	4.85e-06	0.0271	AGCCACGCCCCGTCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	4	18	+	14.377	4.85e-06	0.0271	AGCCACGCCCCGTCT
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	12	25	+	13	4.85e-06	0.0582	GGGGCTTTATGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	12	25	+	13	4.85e-06	0.0582	GGGGCTTTATGGGA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	19	36	-	-2.63158	4.86e-06	0.0179	GCAGGGGGGGAAGGAAAC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	44	-	15	4.86e-06	0.0544	ATCCCGGAAGCG
Zfx	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	13	26	+	15.1212	4.86e-06	0.0139	GGGCGCCGGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	89	102	-	15.1212	4.86e-06	0.0139	GGGCGCCGGGCCTG
EGR1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	4	17	-	14.9423	4.86e-06	0.00502	TCTCCGCCTCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	12	25	-	14.9423	4.86e-06	0.00502	CTCCCTCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	30	43	+	14.9423	4.86e-06	0.00502	TTCCCTCCCACTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	31	44	+	14.9423	4.86e-06	0.00502	CTCCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	31	44	+	14.9423	4.86e-06	0.00502	CTCCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	98	111	+	14.9423	4.86e-06	0.00502	TCTCCGCCTCCACC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	8	28	-	14.3265	4.86e-06	0.00407	AAGGGAGGGAGAGCGAAGGAG
KLF16	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	9	19	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	11	21	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	41	51	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	44	54	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	47	57	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	65	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	55	65	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	65	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	55	65	+	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	34	44	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	34	44	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	58	68	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	61	71	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	64	74	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	96	106	-	15.0172	4.86e-06	0.00665	GCCCCCCCCCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	+	14.6909	4.87e-06	0.0397	CGCCTCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	+	14.6909	4.87e-06	0.0397	CGCCTCCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	-	14.6909	4.87e-06	0.0397	CGCCTCCGGCG
Gata1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	24	34	-	14.8571	4.87e-06	0.687	CTCTTATCTCC
Gata1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	24	34	-	14.8571	4.87e-06	0.687	CTCTTATCTCC
Gata1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	81	91	+	14.8571	4.87e-06	0.687	CTCTTATCTCC
KLF14	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	4	17	+	14.7241	4.87e-06	0.0127	GGCCACGCCTCTTA
KLF14	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	57	70	+	14.7241	4.87e-06	0.0127	GGTCCCGCCCCTTC
KLF14	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	45	58	-	14.7241	4.87e-06	0.0127	GGTCCCGCCCCTTC
KLF14	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	98	111	-	14.7241	4.87e-06	0.0127	GGCCACGCCTCTTA
SPI1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	89	102	+	11.7273	4.88e-06	0.088	GGAAGGCGGAAGTA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	61	75	-	14.9655	4.88e-06	0.00267	CCCCCGCCTCCGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	61	75	-	14.9655	4.88e-06	0.00267	CCCCCGCCTCCGAGG
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	40	50	+	14.4146	4.88e-06	0.00833	CCCACGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	43	53	+	14.4146	4.88e-06	0.00833	CCCACGCCCCG
SP3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	56	66	+	14.4146	4.88e-06	0.00833	CCCACGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	5	15	-	14.4146	4.88e-06	0.00833	CCCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	5	15	-	14.4146	4.88e-06	0.00833	CCCACGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	49	59	-	14.4146	4.88e-06	0.00833	CCCACGCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	62	72	-	14.4146	4.88e-06	0.00833	CCCACGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	67	77	-	14.4146	4.88e-06	0.00833	CCCACGCCCTC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	2	16	-	14.0658	4.88e-06	0.0875	GGAGTTAGTCAGCAG
Hoxc9	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	27	39	-	14.8254	4.89e-06	0.909	TGCCATCAATCAC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	44	-	14.8361	4.89e-06	0.0509	ATCCCGGAAGCG
MEF2C	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	4	18	-	14.8305	4.89e-06	0.462	GAATCAAAAATAGCT
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	52	66	+	14.898	4.89e-06	0.511	CCGTTGTTTACTTAC
EHF	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	41	52	-	15	4.89e-06	0.0691	GACACGGAAGTA
EHF	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	63	74	+	15	4.89e-06	0.0691	GACACGGAAGTA
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	39	53	-	14.9091	4.89e-06	0.104	TCAGTTCCCGTTTCC
Myod1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	83	+	14.9184	4.89e-06	0.0746	CGCAGCTGTCTTT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	85	+	14.9184	4.89e-06	0.0746	CGCAGCTGTCTTT
Myod1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	32	44	-	14.9184	4.89e-06	0.0746	CGCAGCTGTCTTT
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	25	41	+	12.2545	4.89e-06	0.00734	GGCGCCCCGCCCCCACG
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	61	77	+	12.2545	4.89e-06	0.00734	GGCGCCCCGCCCCCACG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	47	63	-	12.2545	4.89e-06	0.00734	CCGGCCCCGCCCCTGGA
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	47	63	-	12.2545	4.89e-06	0.00734	CCGGCCCCGCCCCTGGA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	11	-	13.9455	4.9e-06	0.0858	AGCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	11	-	13.9455	4.9e-06	0.0858	AGCCGGAAGTT
ELF5	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	24	34	+	13.9455	4.9e-06	0.0858	AGCCGGAAGTT
ELF5	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	91	-	13.9455	4.9e-06	0.0858	AGCCGGAAGTT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	22	36	-	14.3607	4.9e-06	0.0271	GGCCACACCCTGGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	22	36	-	14.3607	4.9e-06	0.0271	GGCCACACCCTGGCC
Klf12	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	64	78	-	14.3607	4.9e-06	0.0271	GCCCACGCCCTCCCC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	29	42	-	15.1538	4.9e-06	0.118	CAGAGGTGACTCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	7	17	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	11	21	-	15.0962	4.9e-06	0.00327	GTCCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	43	+	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	29	39	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	29	39	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	36	46	-	15.0962	4.9e-06	0.00327	GTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	36	46	-	15.0962	4.9e-06	0.00327	GTCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	52	62	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	52	62	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	59	69	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	79	+	15.0962	4.9e-06	0.00327	GTCCCACCCCC
SP1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	72	82	-	15.0962	4.9e-06	0.00327	GCCCCACCTCC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	13	24	-	15.1154	4.9e-06	0.0408	CAACATGGAGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	13	24	-	15.1154	4.9e-06	0.0408	CAACATGGAGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	13	24	-	15.1154	4.9e-06	0.0408	CAACATGGAGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	13	24	-	15.1154	4.9e-06	0.0408	CAACATGGAGGC
YY1	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	39	50	+	15.1154	4.9e-06	0.0408	TAACATGGCGGC
YY1	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	65	76	-	15.1154	4.9e-06	0.0408	TAACATGGCGGC
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	56	70	-	14.9155	4.9e-06	0.341	CAAGTGAAAACACAG
Nkx3-1	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	97	105	-	14.4364	4.91e-06	1	ACCACTTAA
NKX3-2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	97	105	-	13.6731	4.91e-06	1	ACCACTTAA
Nkx3-1	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	2	10	+	14.4364	4.91e-06	1	ACCACTTAA
NKX3-2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	2	10	+	13.6731	4.91e-06	1	ACCACTTAA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	4	12	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	4	12	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	21	29	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	21	29	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	23	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	23	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	31	39	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	31	39	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	36	44	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	38	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	30	38	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	31	39	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	71	79	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	83	91	+	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	77	85	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	102	110	-	16.6034	4.91e-06	0.216	ATGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	102	110	-	16.6034	4.91e-06	0.216	ATGACTCAT
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	27	+	14.9231	4.92e-06	0.00502	CTCCCGCCCCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	10	23	-	14.9231	4.92e-06	0.00502	CTCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	10	23	-	14.9231	4.92e-06	0.00502	CTCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	19	32	-	14.9231	4.92e-06	0.00502	GCCCCGCCCCCATG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	19	32	-	14.9231	4.92e-06	0.00502	GCCCCGCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	32	45	-	14.9231	4.92e-06	0.00502	CACCCGCCGCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	32	45	-	14.9231	4.92e-06	0.00502	CACCCGCCGCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	64	77	+	14.9231	4.92e-06	0.00502	CGGCCGCCGCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	89	102	+	14.9231	4.92e-06	0.00502	CGGCCGCCGCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	105	+	14.9231	4.92e-06	0.00502	CTCCCGCCCCCAGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	98	111	+	14.9231	4.92e-06	0.00502	CGGCCGCCGCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	88	101	-	14.9231	4.92e-06	0.00502	CTCCCGCCCCCAGG
Hoxd9	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	47	56	+	13.0694	4.92e-06	1	GCAATAAAAT
ZNF263	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	64	84	+	14.3061	4.93e-06	0.00411	AGGGGAAGGAGGCGGAGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	31	51	-	14.3061	4.93e-06	0.00411	AGGGGAAGGAGGCGGAGGAGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	57	70	-	14.9	4.93e-06	0.196	CTGCGACGTCACAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	57	70	-	14.9	4.93e-06	0.196	CTGCGACGTCACAA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	9	22	+	14.9	4.93e-06	0.196	CTGCGACGTCACAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	9	22	+	14.9	4.93e-06	0.196	CTGCGACGTCACAA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	82	93	+	14.8197	4.93e-06	0.0509	GACCAGGAAGTG
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	76	-	14.8197	4.93e-06	0.0509	GACCAGGAAGTG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	3	17	-	14.9483	4.93e-06	0.00269	GGCCCGCCCCTGACA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	3	17	-	14.9483	4.93e-06	0.00269	GGCCCGCCCCTGACA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	38	52	+	14.9483	4.93e-06	0.00269	GGCCCTCCCTCTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	63	+	14.9483	4.93e-06	0.00269	CCCCCACCCCTCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	63	+	14.9483	4.93e-06	0.00269	CCCCCACCCCTCTCC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	1	15	-	12.9888	4.93e-06	0.163	GCCACCAATGGGGTA
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	1	15	-	12.9888	4.93e-06	0.163	GCCACCAATGGGGTA
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	9	20	+	15.2135	4.94e-06	0.99	CCAACAGCTGGT
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	72	82	+	15.1224	4.94e-06	0.219	ATTTCCAGGAA
Gfi1	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	6	15	+	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	27	36	+	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	27	36	+	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	45	54	+	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	73	82	+	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	1	10	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	1	10	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	33	42	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	33	42	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	61	70	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	61	70	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	61	70	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	68	77	-	12.7561	4.94e-06	0.241	CCAATCACAG
Gfi1	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	100	109	-	12.7561	4.94e-06	0.241	CCAATCACAG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	31	51	-	14.5484	4.94e-06	0.0913	TTTTAGTTTTTTTTTTTTTTT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	43	57	+	14.0395	4.94e-06	0.0875	ACAGTGAGTCAGCGG
E2F2	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	63	78	+	10.122	4.94e-06	1	AAACTGGCGCTTTTTT
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	54	64	-	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	21	31	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	21	31	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	51	61	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	51	61	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	51	61	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	51	61	+	15.1897	4.94e-06	0.022	TGGCGGGAGGG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	+	14.4909	4.94e-06	0.0893	AGCCCGCAGGCA
Vdr	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	15	30	+	12.0984	4.95e-06	0.486	GGGTTCATGGGGGTTG
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	30	44	+	14.9545	4.95e-06	0.0317	ATCTCACGAGATCTG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	58	66	-	13.1163	4.95e-06	0.433	AGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	58	66	-	13.1163	4.95e-06	0.433	AGCAGGTGC
HIC2	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	2	10	+	12.8	4.95e-06	0.237	ATGCCCACC
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	17	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	17	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	18	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	18	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	29	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	29	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	31	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	31	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	31	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	31	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	37	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	39	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	39	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	39	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	39	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	39	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	32	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	32	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	32	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	32	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	38	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	85	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	91	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	86	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	92	-	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	105	+	15.2472	4.95e-06	0.0939	GCCACGTGG
Creb3l2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	106	-	15.2472	4.95e-06	0.0939	GCCACGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	76	+	13.1163	4.95e-06	0.433	AGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	76	+	13.1163	4.95e-06	0.433	AGCAGGTGC
HIC2	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	21	29	-	12.8	4.95e-06	0.237	ATGCCCACC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	18	26	+	11.5395	4.95e-06	0.192	CTGCCCGTA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	18	26	+	11.5395	4.95e-06	0.192	CTGCCCGTA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	18	26	+	11.5395	4.95e-06	0.192	CTGCCCGTA
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	25	39	-	14.4754	4.95e-06	0.167	GTGACTCAGCTTCAT
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	25	39	-	14.4754	4.95e-06	0.167	GTGACTCAGCTTCAT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	25	39	-	14.4754	4.95e-06	0.167	GTGACTCAGCTTCAT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	25	39	-	14.4754	4.95e-06	0.167	GTGACTCAGCTTCAT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	95	109	+	14.4754	4.95e-06	0.167	GTGAGTCAGCATGCC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	95	109	+	14.4754	4.95e-06	0.167	GTGAGTCAGCATGCC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	5	15	+	15.082	4.95e-06	0.0206	CCGGAAGTTGC
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	63	76	+	10.9512	4.95e-06	0.154	GGGGTCGAAGGGCA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	63	76	+	10.9512	4.95e-06	0.154	GGGGTCGAAGGGCA
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	44	+	14.9592	4.96e-06	0.15	AGGCACGTGGC
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	69	+	14.9592	4.96e-06	0.15	AGGCACGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	81	-	14.9592	4.96e-06	0.15	AGGCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	81	-	14.9592	4.96e-06	0.15	AGGCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	81	-	14.9592	4.96e-06	0.15	AGGCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	81	-	14.9592	4.96e-06	0.15	AGGCACGTGGC
Npas2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	14.1803	4.96e-06	0.333	ACCACGTGTC
Npas2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	14.1803	4.96e-06	0.333	ACCACGTGTC
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	9	18	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	11	20	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	28	37	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	41	50	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	35	44	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	35	44	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	44	53	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	47	56	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	55	64	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	64	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	64	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	55	64	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	59	68	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	62	71	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	73	82	+	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	65	74	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	97	106	-	15.1651	4.96e-06	0.0187	GCCCCCCCCC
SP8	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	34	45	+	14.6974	4.96e-06	0.0131	CCCACGCCCATC
SP8	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	70	81	-	14.6974	4.96e-06	0.0131	CCCACGCCCATC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	9	22	-	12.9388	4.96e-06	0.0582	GGGGCCCTGGGGAG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.1552	4.96e-06	0.0647	ACCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	14.1552	4.96e-06	0.0647	ACCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	14.1552	4.96e-06	0.0647	ACCGGAAGTC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	44	61	+	-2.78947	4.97e-06	0.0179	GGGAGGAAGAAAGGCGAA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	17	30	-	14.9038	4.97e-06	0.00504	CCCACACCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	17	30	-	14.9038	4.97e-06	0.00504	CCCACACCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	17	30	-	14.9038	4.97e-06	0.00504	CCCACACCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	17	30	-	14.9038	4.97e-06	0.00504	CCCACACCTCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	64	77	+	14.9038	4.97e-06	0.00504	TCCCTGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	52	65	-	14.9038	4.97e-06	0.00504	GCTCCGCCTCCTCA
TP63	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	+	9.06897	4.97e-06	0.44	GACGAGCCCGAACTCGTC
TP63	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	-	9.06897	4.97e-06	0.44	GACGAGCCCGAACTCGTC
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	45	55	+	15.5636	4.97e-06	0.148	TTTCTAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	45	55	+	15.5636	4.97e-06	0.148	TTTCTAGGAAG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	+	14.4909	4.98e-06	0.0548	CGCCCCCGGCCA
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	45	+	14.9828	4.98e-06	0.0068	ACCCCGCCCAC
YY2	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	48	58	+	14.697	4.98e-06	0.269	CTCCGCCATTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	65	78	-	14.6897	4.98e-06	0.0128	GGCCCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	65	78	-	14.6897	4.98e-06	0.0128	GGCCCCGCCCCCGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	65	78	-	14.6897	4.98e-06	0.0128	GGCCCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	65	78	-	14.6897	4.98e-06	0.0128	GGCCCCGCCCCCGA
GCM2	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	9	18	+	14.459	4.98e-06	0.708	GATGCGGGCA
GCM2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	97	106	-	14.459	4.98e-06	0.708	GATGCGGGCA
GCM2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	97	106	-	14.459	4.98e-06	0.708	GATGCGGGCA
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	97	106	-	14.459	4.98e-06	0.708	GATGCGGGCA
GCM2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	97	106	-	14.459	4.98e-06	0.708	GATGCGGGCA
GCM2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	97	106	-	14.459	4.98e-06	0.708	GATGCGGGCA
ETV6	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	24	33	-	15.1923	4.98e-06	0.0363	CGCGGAAGTA
USF2	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	28	38	-	15.1429	4.99e-06	0.045	ACCATGTGACT
USF2	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	72	82	-	15.1429	4.99e-06	0.045	ACCATGTGACT
USF2	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	33	43	+	15.1429	4.99e-06	0.045	ACCATGTGACT
USF2	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	77	87	+	15.1429	4.99e-06	0.045	ACCATGTGACT
GSX2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.6226	4.99e-06	1	CCCAATTAAA
GSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.6226	4.99e-06	1	CCCAATTAAA
GSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.6226	4.99e-06	1	CCCAATTAAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	56	76	+	14.2857	4.99e-06	0.00416	GGAGGCAGGCTTGGAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	39	59	-	14.2857	4.99e-06	0.00416	GGAGGCAGGCTTGGAGGAGGA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	+	15.0545	4.99e-06	0.0542	TGCCCGAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	+	15.0545	4.99e-06	0.0542	CGCCTCAGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	-	15.0545	4.99e-06	0.0542	TGCCCGAGGCA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	21	+	14.931	4.99e-06	0.00271	CCCCCTCCCCCTTCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	21	+	14.931	4.99e-06	0.00271	CCCCCTCCCCCTTCT
SP2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	24	+	14.931	4.99e-06	0.00271	GCCCCGCCCAGCGCG
SP2	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	17	31	+	14.931	4.99e-06	0.00271	CGCCCTCCCCCCTCC
SP2	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	84	98	-	14.931	4.99e-06	0.00271	CGCCCTCCCCCCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	94	108	-	14.931	4.99e-06	0.00271	CCCCCTCCCCCTTCT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:94656976..94657090,+__594.1.0.0	6	23	-	-2.82895	5e-06	0.0179	GGAAGAAAAGGAGGCGGC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	+	14.6818	5e-06	0.0616	TGTTACCAGGACAACC
ZBTB33	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	15	29	-	14.9394	5e-06	0.0317	CTCTCGCGAGAGAGG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	16	30	-	14.9394	5e-06	0.0317	CTCTCGCGATGTTGA
ZBTB33	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	85	99	+	14.9394	5e-06	0.0317	CTCTCGCGATGTTGA
ZBTB33	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	86	100	+	14.9394	5e-06	0.0317	CTCTCGCGAGAGAGG
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	13	23	-	15.0816	5e-06	0.0533	TCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	13	23	-	15.0816	5e-06	0.0533	TCCACGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	13	23	-	15.0816	5e-06	0.0533	TCCACGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	13	23	-	15.0816	5e-06	0.0533	TCCACGTGACC
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	73	87	+	5.85714	5e-06	0.629	GAGGGTCAGAGTTCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	73	87	+	5.85714	5e-06	0.629	GAGGGTCAGAGTTCA
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	3	20	+	-2.84211	5e-06	0.0179	AGAGGGAGGGAAGGAGAA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	28	45	-	-2.84211	5e-06	0.0179	AGAGGGAGGGAAGGAGAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	70	87	+	-2.84211	5e-06	0.0179	AGAGGGAGGGAAGGAGAA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	95	112	-	-2.84211	5e-06	0.0179	AGAGGGAGGGAAGGAGAA
Zfx	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	11	24	-	15.0909	5.02e-06	0.0141	ACCGGCTGGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	42	55	+	15.0909	5.02e-06	0.0141	ACCGGCTGGGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	45	58	+	15.0909	5.02e-06	0.0141	GCGTCTGCGGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	91	104	+	15.0909	5.02e-06	0.0141	ACCGGCTGGGCCTG
ATF7	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	24	37	-	14.8429	5.02e-06	0.0727	AGATGACGTCAGCC
SPI1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	71	84	-	11.6364	5.03e-06	0.089	AAAATGAGGAAGGA
POU1F1	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	9	22	-	14.7241	5.03e-06	0.835	TGTATGCAAATGAA
FLI1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	15.2553	5.03e-06	0.0685	ACCGGAAATA
ETS1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	14.7759	5.03e-06	0.0591	ACCGGAAATA
ZIC1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	65	+	13.2979	5.03e-06	0.0778	CGCCCCCCGGGGTG
ZIC1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	50	63	-	13.2979	5.03e-06	0.0778	CGCCCCCCGGGGTG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	28	42	+	14.3694	5.03e-06	0.124	GGAGGGGAGGGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	28	42	+	14.3694	5.03e-06	0.124	GGAGGGGAGGGGGCA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	37	56	-	11.4862	5.03e-06	0.0343	CCCCTATCCACCCCCAGCCC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	26	43	-	-2.88158	5.04e-06	0.0179	GGGAGGAGGGGAGCCTGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	42	55	-	14.8846	5.04e-06	0.0051	CCTCCGCTCCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	81	94	+	14.8846	5.04e-06	0.0051	CTCCCTCCCACACA
PAX5	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	53	71	-	14.6613	5.04e-06	0.112	GAGGCCGCCCGAGCGTGCC
KLF13	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	75	92	+	12.5172	5.04e-06	0.0637	GAAACACGCCCATTCCAC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	-	15.2414	5.04e-06	0.0446	CGCCCTTAGGGCG
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	-	14.6667	5.05e-06	0.0616	GGTTGTCCTGGTAACA
NRF1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	7	17	+	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	5	15	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	5	15	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	5	15	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	5	15	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	5	15	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	50	60	+	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	55	65	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	100	110	+	15.2	5.05e-06	0.00428	CCGCATGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	98	108	-	15.2	5.05e-06	0.00428	CCGCATGCGCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	48	58	-	14.898	5.05e-06	0.0612	AGCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	48	58	-	14.898	5.05e-06	0.0612	AGCAGCTGCCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	96	106	-	14.898	5.05e-06	0.0612	AGCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	96	106	-	14.898	5.05e-06	0.0612	AGCAGCTGCCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	28	47	+	11.4771	5.05e-06	0.0343	ACCCCCCCCGCCCCCCGCAC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	-	15.4082	5.05e-06	0.14	CATGACTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	-	15.4082	5.05e-06	0.14	CATGACTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	+	15.4082	5.05e-06	0.14	CATGACTCACG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	37	50	-	12.898	5.05e-06	0.0582	GGGGGGTTCTGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	37	50	-	12.898	5.05e-06	0.0582	GGGGGGTTCTGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	37	50	-	12.898	5.05e-06	0.0582	GGGGGGTTCTGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	37	50	-	12.898	5.05e-06	0.0582	GGGGGGTTCTGGGG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	48	63	-	10.931	5.05e-06	0.231	TTCCCAGAATTCCTTG
GLIS2	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	11	24	-	14.1967	5.05e-06	0.176	GACCCCACGCCACG
GLIS2	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	91	104	+	14.1967	5.05e-06	0.176	GACCCCACGCCACG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	5	19	-	14.9138	5.05e-06	0.00272	GCCCCTCCTCCAACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	5	19	-	14.9138	5.05e-06	0.00272	GCCCCTCCTCCAACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	5	19	-	14.9138	5.05e-06	0.00272	GCCCCTCCTCCAACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	5	19	-	14.9138	5.05e-06	0.00272	GCCCCTCCTCCAACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	11	25	-	14.9138	5.05e-06	0.00272	CCTCCGCCTCCCCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	11	25	-	14.9138	5.05e-06	0.00272	CCTCCGCCTCCCCGG
SP2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	14	28	-	14.9138	5.05e-06	0.00272	CCTCCGCCCCCTTCT
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	14	28	-	14.9138	5.05e-06	0.00272	CCTCCGCCCCCTTCT
SP2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	14	28	-	14.9138	5.05e-06	0.00272	CCTCCGCCCCCTTCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	46	+	14.9138	5.05e-06	0.00272	GCCCCGCCCCGGAGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	46	+	14.9138	5.05e-06	0.00272	GCCCCGCCCCGGAGG
SP2	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	48	+	14.9138	5.05e-06	0.00272	TCCCCGCCCCCAGTG
SP2	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	29	43	-	14.9138	5.05e-06	0.00272	GCCCCGCCCCGGAGG
SP2	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	86	+	14.9138	5.05e-06	0.00272	GCCCCGCCCCGGAGG
SP2	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	69	83	-	14.9138	5.05e-06	0.00272	GCCCCGCCCCGGAGG
SP2	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	102	+	14.9138	5.05e-06	0.00272	CCTCCGCCCCCTTCT
SP4	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	25	41	+	12.1636	5.06e-06	0.00745	CAGACTCCGCCCCTACT
SP4	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	28	44	-	12.1636	5.06e-06	0.00745	CAGACTCCGCCCCTACT
SP4	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	71	87	+	12.1636	5.06e-06	0.00745	CAGACTCCGCCCCTACT
SP4	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	74	90	-	12.1636	5.06e-06	0.00745	CAGACTCCGCCCCTACT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	15	25	-	15.1364	5.06e-06	0.0344	CGCCACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	15	25	-	15.1364	5.06e-06	0.0344	CGCCACGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	15	25	-	15.1364	5.06e-06	0.0344	CGCCACGCCCA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	12	25	+	15.1154	5.07e-06	0.118	GAGTGGTGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	49	-	15.1154	5.07e-06	0.118	GAGTGGTGACTCAC
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	70	81	+	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	70	81	+	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	70	81	+	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	70	81	+	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	82	-	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	82	-	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	82	-	14.9508	5.07e-06	0.0691	GACCCGGAAGCA
TCF4	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	21	+	14.2449	5.08e-06	0.207	CGCACCTGTG
TCF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	103	-	14.2449	5.08e-06	0.207	CGCACCTGTG
TCF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	103	-	14.2449	5.08e-06	0.207	CGCACCTGTG
TCF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	103	-	14.2449	5.08e-06	0.207	CGCACCTGTG
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	103	-	14.2449	5.08e-06	0.207	CGCACCTGTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	67	+	-2.93421	5.08e-06	0.0179	GGAGGCGGGGGAGGAAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	67	+	-2.93421	5.08e-06	0.0179	GGAGGCGGGGGAGGAAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	67	+	-2.93421	5.08e-06	0.0179	GGAGGCGGGGGAGGAAAG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	57	74	+	-2.93421	5.08e-06	0.0179	AGAAAGAGGCCAGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	57	74	+	-2.93421	5.08e-06	0.0179	AGAAAGAGGCCAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	57	74	+	-2.93421	5.08e-06	0.0179	AGAAAGAGGCCAGGCAGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	48	65	-	-2.93421	5.08e-06	0.0179	GGAGGCGGGGGAGGAAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	38	47	-	13.3232	5.08e-06	0.0742	TGAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	38	47	-	13.3232	5.08e-06	0.0742	TGAGGGGGAA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	30	44	+	14.8	5.09e-06	0.22	GAAAAGTAAAAGTAA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	99	113	+	14.8	5.09e-06	0.22	GAAAAGTAAAAGTAA
SP4	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	18	34	+	12.1455	5.09e-06	0.00745	CTTGCCCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	12	28	-	12.1455	5.09e-06	0.00745	GAAGCCCCGCCCCAGGA
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	12	28	-	12.1455	5.09e-06	0.00745	GAAGCCCCGCCCCAGGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	12	28	-	12.1455	5.09e-06	0.00745	GAAGCCCCGCCCCAGGA
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	12	28	-	12.1455	5.09e-06	0.00745	GAAGCCCCGCCCCAGGA
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	46	62	+	12.1455	5.09e-06	0.00745	CTTGCCCCGCCTCCTGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	82	98	+	12.1455	5.09e-06	0.00745	CTTGCCCCGCCTCCTGC
SP4	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	81	97	-	12.1455	5.09e-06	0.00745	CTTGCCCCGCCTCCTGC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	+	14.3367	5.09e-06	0.0857	AGCCCGCAGGCA
PKNOX2	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	-	11.3115	5.1e-06	0.475	TGACATCTGACA
EGR1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	11	24	-	14.8654	5.1e-06	0.00513	GTCCCGCCCCCTGA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	47	+	14.8654	5.1e-06	0.00513	GTCCCGCCCCCTGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	47	+	14.8654	5.1e-06	0.00513	GTCCCGCCCCCTGA
EGR1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	68	81	-	14.8654	5.1e-06	0.00513	GTCCCGCCCCCTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	83	96	+	14.8654	5.1e-06	0.00513	CGCCCGCCGACGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	104	+	14.8654	5.1e-06	0.00513	GTCCCGCCCCCTGA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	81	100	+	11.4495	5.1e-06	0.0343	CCGCCACCCAACAGCTCCGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.1	14	28	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.0.0	14	28	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.1.0	14	28	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.0	14	28	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	50	64	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	50	64	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	50	64	-	14.9091	5.11e-06	0.0317	TTCTCACGAGATCTT
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	+	14.5192	5.11e-06	0.0526	AGCCGCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	+	14.5192	5.11e-06	0.0526	CGCCGGAGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	+	14.5192	5.11e-06	0.0526	CGCCGGAGGCA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	+	14.5192	5.11e-06	0.0526	AGCCGCAGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	-	14.5192	5.11e-06	0.0526	AGCCGCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	-	14.5192	5.11e-06	0.0526	AGCCGCAGGCA
TFE3	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	13.6735	5.12e-06	0.046	CCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	13.6735	5.12e-06	0.046	CCCACGTGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	13.6735	5.12e-06	0.046	CCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	13.6735	5.12e-06	0.046	CCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	13.6735	5.12e-06	0.046	CCCACGTGAC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	39	59	+	14.2449	5.12e-06	0.00424	GAAGGATGGGAAGGAGTTAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	72	92	+	14.2449	5.12e-06	0.00424	GAGGAAGTGAGAGGAGGAGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	89	109	+	14.2449	5.12e-06	0.00424	TGTGGAGGAGGAAGGAGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	68	88	-	14.2449	5.12e-06	0.00424	GGTGAAGATGGGGGAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	68	88	-	14.2449	5.12e-06	0.00424	GGTGAAGATGGGGGAGGGGAG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	42	61	+	11.4404	5.12e-06	0.0343	CACCACTCCACCACCTCCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	11	25	+	14.8966	5.12e-06	0.00274	GCCCCGCCTTTTTCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	11	25	+	14.8966	5.12e-06	0.00274	GCCCCGCCTTTTTCT
SP2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	23	37	-	14.8966	5.12e-06	0.00274	CCCCCTCCTCCCGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	26	40	-	14.8966	5.12e-06	0.00274	GCCCCGCCCTGCTCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	26	40	-	14.8966	5.12e-06	0.00274	GCCCCGCCCTGCTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	26	40	-	14.8966	5.12e-06	0.00274	GCCCCGCCCTGCTCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	26	40	-	14.8966	5.12e-06	0.00274	GCCCCGCCCTGCTCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	90	104	-	14.8966	5.12e-06	0.00274	GCCCCGCCTTTTTCT
USF2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	13	23	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	26	36	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	34	44	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	44	54	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	44	54	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	47	57	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	47	57	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	47	57	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	47	57	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	47	57	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	63	73	-	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	52	+	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	59	+	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	71	+	15.0816	5.12e-06	0.045	GTCACGTGGCC
USF2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	89	+	15.0816	5.12e-06	0.045	GTCACGTGGCC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	4	21	+	-2.98684	5.13e-06	0.0179	GGGAGGAGGGGAGGGGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	33	50	+	-2.98684	5.13e-06	0.0179	GGGAGGAGGGGAGGGGGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	65	82	-	-2.98684	5.13e-06	0.0179	GGGAGGAGGGGAGGGGGC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	94	111	-	-2.98684	5.13e-06	0.0179	GGGAGGAGGGGAGGGGGC
ELK4	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	30	-	14.8545	5.13e-06	0.0246	CGGCTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	32	42	+	14.8545	5.13e-06	0.0246	TCGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	54	-	14.8545	5.13e-06	0.0246	CGGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	54	-	14.8545	5.13e-06	0.0246	CGGCTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	56	66	+	14.8545	5.13e-06	0.0246	GTACTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	59	-	14.8545	5.13e-06	0.0246	GTACTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	85	95	+	14.8545	5.13e-06	0.0246	CGGCTTCCGGT
Esrrg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	67	76	-	15.4082	5.14e-06	0.702	TGAAGGTCAT
ZNF143	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	34	49	+	10.8793	5.14e-06	0.231	CTCCCAGCGTGCCCCG
ZNF143	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	66	81	-	10.8793	5.14e-06	0.231	CTCCCAGCGTGCCCCG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	69	86	+	-3	5.14e-06	0.0179	GGGAGGAGGGGAAGCAGA
KLF13	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	37	54	-	12.4655	5.14e-06	0.064	AGGCCACACCCCTCCTTC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	15	25	+	15.4182	5.14e-06	0.0753	TGGTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	29	39	+	15.4182	5.14e-06	0.0753	TGGTGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	29	39	+	15.4182	5.14e-06	0.0753	TGGTGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	79	89	+	15.4182	5.14e-06	0.0753	CGGTGACTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	46	-	15.4182	5.14e-06	0.0753	TGGTGACTCAC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	64	75	+	14.9344	5.15e-06	0.0691	GTCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	64	75	+	14.9344	5.15e-06	0.0691	GTCCCGGAAGTG
TGIF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	34	-	14.0275	5.16e-06	0.425	TGCCAGCTGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	34	-	14.0275	5.16e-06	0.425	TGCCAGCTGTCA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	21	31	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	21	31	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	51	61	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	51	61	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	51	61	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	51	61	+	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	54	64	-	15.2759	5.16e-06	0.0219	TGGCGGGAGGG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	91	+	14.8571	5.16e-06	0.076	TACAGCTGTCGCT
PROX1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	94	105	+	14.5636	5.16e-06	1	CAAGACGCCGTG
PROX1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	10	21	-	14.5636	5.16e-06	1	CAAGACGCCGTG
PROX1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	38	49	-	14.5636	5.16e-06	1	CAAGACGCCGTG
PROX1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	74	85	-	14.5636	5.16e-06	1	CAAGACGCCGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	79	96	-	-3.02632	5.16e-06	0.0179	GAAAGGGAGCCAGGAACA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	79	96	-	-3.02632	5.16e-06	0.0179	GAAAGGGAGCCAGGAACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	79	96	-	-3.02632	5.16e-06	0.0179	GAAAGGGAGCCAGGAACA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	79	96	-	-3.02632	5.16e-06	0.0179	GAAAGGGAGCCAGGAACA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	40	52	+	14.6667	5.17e-06	0.196	CGGGGGAGCCCCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	71	84	+	14.8462	5.17e-06	0.00518	CTGCCACCCACACC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	71	84	+	14.8462	5.17e-06	0.00518	CTGCCACCCACACC
ATF7	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	26	39	+	14.7714	5.17e-06	0.0727	AGATGACGTCAGCA
ATF7	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	28	41	-	14.7714	5.17e-06	0.0727	AGATGACGTCAGCA
ATF7	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	76	89	-	14.7714	5.17e-06	0.0727	AGATGACGTCAGCA
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	29	+	15.0408	5.17e-06	0.0533	CCCACGTGATC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	29	+	15.0408	5.17e-06	0.0533	CCCACGTGATC
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	29	+	15.0408	5.17e-06	0.0533	CCCACGTGATC
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	29	+	15.0408	5.17e-06	0.0533	CCCACGTGATC
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	29	+	15.0408	5.17e-06	0.0533	CCCACGTGATC
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	12	24	+	14.7273	5.17e-06	0.341	GATAATCATTAAC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	10	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	10	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	11	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	11	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	11	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	15	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	17	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	17	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	1	10	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	21	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	21	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	4	13	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	22	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	4	13	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	24	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	24	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	25	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	7	16	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	27	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	10	19	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	10	19	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	12	21	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	32	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	32	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	32	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	16	25	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	34	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	34	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	34	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	34	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	16	25	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	35	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	18	27	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	18	27	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	19	28	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	21	30	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	22	31	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	41	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	41	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	41	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	41	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	41	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	43	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	43	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	27	36	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	46	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	28	37	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	49	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	31	40	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	31	40	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	36	45	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	36	45	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	38	47	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	59	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	59	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	59	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	59	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	42	51	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	42	51	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	61	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	64	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	70	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	70	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	71	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	54	63	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	73	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	75	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	79	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	79	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	61	70	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	64	73	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	64	73	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	65	74	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	65	74	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	66	75	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	66	75	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	67	76	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	67	76	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	69	78	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	87	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	88	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	90	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	90	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	93	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	96	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	97	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	97	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	83	92	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	88	97	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	90	99	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	108	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	108	+	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	94	103	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	105	114	-	15.102	5.17e-06	0.00432	CCCCCGCCCC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	55	68	-	15.0606	5.17e-06	0.0145	GCAGCTGGGGCCTC
GLIS2	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	26	39	-	14.1475	5.17e-06	0.176	CGCCCCCCGCGGGC
Gata1	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	73	83	+	14.7959	5.18e-06	0.687	GTCTTATCTGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	25	42	-	-3.03947	5.18e-06	0.0179	GCAGGGAGGGGAGGCAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	25	42	-	-3.03947	5.18e-06	0.0179	GCAGGGAGGGGAGGCAGA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	73	90	+	-3.03947	5.18e-06	0.0179	GCAGGGAGGGGAGGCAGA
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	9	22	-	13.234	5.18e-06	0.0778	CGCCACCCGCCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	9	22	-	13.234	5.18e-06	0.0778	CGCCACCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	9	22	-	13.234	5.18e-06	0.0778	CGCCACCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	9	22	-	13.234	5.18e-06	0.0778	CGCCACCCGCCGCG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	21	34	+	12.8367	5.18e-06	0.0582	GGGGCCCGCTGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	84	104	-	14.2245	5.18e-06	0.00429	TGGGGAGGAAGCTGGAGAGAG
KLF14	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	12	25	+	14.6034	5.18e-06	0.013	AGCCCCGCCCCCAA
KLF14	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	11	24	-	14.6034	5.18e-06	0.013	GGGCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	57	70	+	14.6034	5.18e-06	0.013	AGCCCCGCCCCCGT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	57	70	+	14.6034	5.18e-06	0.013	AGCCCCGCCCCCGT
KLF14	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	90	103	-	14.6034	5.18e-06	0.013	AGCCCCGCCCCCAA
Foxa2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	45	56	+	14.73	5.19e-06	0.439	TGTTGACTTAGT
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	48	62	+	13.5694	5.19e-06	0.206	GTATAAATAGCAGCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	48	62	+	13.5694	5.19e-06	0.206	GTATAAATAGCAGCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.0	48	62	+	13.5694	5.19e-06	0.206	GTATAAATAGCAGCC
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	48	62	+	13.5694	5.19e-06	0.206	GTATAAATAGCAGCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	48	62	+	13.5694	5.19e-06	0.206	GTATAAATAGCAGCC
SP2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	28	+	14.8793	5.19e-06	0.00277	ACCCCGCCTCCTTCA
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	30	44	-	14.8793	5.19e-06	0.00277	TCTCCGCCCCTTTCC
SP2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	66	80	+	14.8793	5.19e-06	0.00277	CTCCCTCCCCCTTCG
SP2	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	87	101	-	14.8793	5.19e-06	0.00277	GCCCTGCCCCCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	88	102	-	14.8793	5.19e-06	0.00277	TTCCCGCCCTCCGCT
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	16	27	-	15.5273	5.19e-06	0.731	AAGCATATGTTC
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	16	27	-	15.5273	5.19e-06	0.731	AAGCATATGTTC
BHLHE23	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	16	27	-	15.5273	5.19e-06	0.731	AAGCATATGTTC
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	14.0385	5.19e-06	0.276	CCCACGTGCT
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	14.0385	5.19e-06	0.276	CCCACGTGCT
MAX	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	14.0385	5.19e-06	0.276	CCCACGTGCT
Hes1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	+	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	-	11.4476	5.19e-06	0.0721	GGCACGCGCG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	49	63	+	13.5517	5.19e-06	0.0251	GTACCCCCCCGCACG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	90	104	+	15.1538	5.19e-06	0.0601	CTGTGAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	90	104	+	15.1538	5.19e-06	0.0601	CTGTGAGCCAATGAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	3	17	+	13.9211	5.19e-06	0.0875	ATGATGACTCTGCAA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	3	17	+	13.9211	5.19e-06	0.0875	ATGATGACTCTGCAA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	63	77	+	14.5286	5.2e-06	0.0744	CGGGGGCGGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	63	77	+	14.5286	5.2e-06	0.0744	CGGGGGCGGGGGGCG
Klf1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	44	54	+	15.0758	5.2e-06	0.0344	TGCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	61	71	+	15.0758	5.2e-06	0.0344	TGCCCCACCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	61	71	+	15.0758	5.2e-06	0.0344	TGCCCCACCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	45	55	-	15.0758	5.2e-06	0.0344	TGCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	61	71	-	15.0758	5.2e-06	0.0344	TGCCCCACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	61	71	-	15.0758	5.2e-06	0.0344	TGCCCCACCCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	81	98	-	-3.06579	5.2e-06	0.0179	GGAGGAAGGCGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	81	98	-	-3.06579	5.2e-06	0.0179	GGAGGAAGGCGAGGAGGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	47	59	-	14.4138	5.2e-06	0.0887	TAGGCGGAAGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	47	59	-	14.4138	5.2e-06	0.0887	TAGGCGGAAGTGG
CREB3	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	88	101	+	14.8	5.21e-06	0.196	CGGACACGTCATTC
EHF	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	42	53	+	14.9016	5.21e-06	0.0691	TTCCCGGAAGTT
EHF	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	73	-	14.9016	5.21e-06	0.0691	TTCCCGGAAGTT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	18	35	+	-3.07895	5.21e-06	0.0179	AGGAGGAGGGGAGGCGGG
RREB1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	25	44	-	11.3945	5.21e-06	0.0343	CCTCCAGCCACCCACCCCGC
RREB1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	71	90	+	11.3945	5.21e-06	0.0343	CCTCCAGCCACCCACCCCGC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	78	87	+	14.7429	5.21e-06	0.454	CCATTGTCCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	78	87	+	14.7429	5.21e-06	0.454	CCATTGTCCC
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	78	87	+	14.7429	5.21e-06	0.454	CCATTGTCCC
STAT3	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	16	26	-	15.0408	5.22e-06	0.126	GTTCCGGGAAA
STAT3	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	67	77	+	15.0408	5.22e-06	0.126	GTTCCGGGAAA
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	13.8182	5.22e-06	0.247	GGCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	13.8182	5.22e-06	0.247	GGCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	13.8182	5.22e-06	0.247	GGCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	13.8182	5.22e-06	0.247	GGCACGTGCC
ELF1	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	25	36	+	14.8545	5.22e-06	0.0544	CAGCCGGAAGTG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	67	78	+	14.8545	5.22e-06	0.0544	AAACCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	90	-	14.8545	5.22e-06	0.0544	CAGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	90	-	14.8545	5.22e-06	0.0544	CAGCCGGAAGTG
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	65	83	-	14.6129	5.22e-06	0.112	GAAGGCAGCAGAGCATGCA
PLAG1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	37	50	+	12.8163	5.22e-06	0.0582	GGGGGGAAGGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	65	78	-	12.8163	5.22e-06	0.0582	GGGGGGAAGGGGGA
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	47	63	-	12.0727	5.22e-06	0.00763	GCGGCTCCGCCCACCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	34	47	+	14.5862	5.23e-06	0.013	GGCCCCGCCCACAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	34	47	+	14.5862	5.23e-06	0.013	GGCCCCGCCCACAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	34	47	+	14.5862	5.23e-06	0.013	GGCCCCGCCCACAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	34	47	+	14.5862	5.23e-06	0.013	GGCCCCGCCCACAG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	5	14	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	5	14	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	5	14	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	5	14	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	5	14	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	6	15	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	6	15	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	14	23	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	14	23	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	14	23	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	14	23	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	27	36	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	27	36	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	27	36	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	27	36	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	30	39	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	42	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	34	43	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	36	45	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	39	48	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	42	51	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	42	51	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	42	51	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	60	69	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	68	77	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	68	77	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	78	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	73	82	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	89	98	-	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	1	10	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	4	13	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	8	17	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	15	24	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	17	26	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	26	35	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	26	35	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	30	39	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	32	41	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	33	42	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	36	45	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	46	55	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	56	65	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	62	71	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	64	73	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	64	73	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	70	79	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	70	79	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	70	79	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	72	81	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	72	81	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	72	81	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	72	81	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	73	82	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	79	88	+	15.8061	5.23e-06	0.00514	GGGGCGTGGC
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	47	60	-	14.303	5.23e-06	0.198	CGGCCACGTGATCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	+	14.4364	5.23e-06	0.0893	CGCCCCCGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	+	14.4364	5.23e-06	0.0893	CGCCCCCGGGCT
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	16	32	+	12.3816	5.23e-06	0.426	GCGCTGACGTCAGAGAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	9	23	-	13.5345	5.23e-06	0.0251	CCACGCCCACACGTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	9	23	-	13.5345	5.23e-06	0.0251	CCACGCCCACACGTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	9	23	-	13.5345	5.23e-06	0.0251	CCACGCCCACACGTC
CTCF	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	25	43	-	14.0164	5.24e-06	0.0498	CGGCCCCCAGGAGGAGGCG
CTCF	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	72	90	+	14.0164	5.24e-06	0.0498	CGGCCCCCAGGAGGAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	-	15.1639	5.24e-06	0.0537	TGCCTCCAAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	-	15.1639	5.24e-06	0.0537	TGCCTCCAAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	+	15.1639	5.24e-06	0.0537	TGCCCTCCAGGCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	20	+	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	20	+	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	7	17	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	21	31	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	21	31	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	21	31	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	21	31	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	41	+	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	33	43	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	33	43	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	29	39	-	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	32	42	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	32	42	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	32	42	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	44	54	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	55	+	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	50	60	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	50	60	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	45	55	-	15.0769	5.24e-06	0.0034	GTTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	45	55	-	15.0769	5.24e-06	0.0034	GTTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	45	55	-	15.0769	5.24e-06	0.0034	GTTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	45	55	-	15.0769	5.24e-06	0.0034	GTTCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	55	65	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	60	70	-	15.0769	5.24e-06	0.0034	TCCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	84	94	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	98	108	+	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	93	103	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	93	103	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	93	103	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	93	103	-	15.0769	5.24e-06	0.0034	GCTCCGCCTCC
Stat5a::Stat5b	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	8	18	+	15.0204	5.24e-06	0.219	GTTTCCTAGAA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	2	15	+	14.8269	5.24e-06	0.00521	CTTCCTCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	2	15	+	14.8269	5.24e-06	0.00521	CTTCCTCCTCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	20	33	-	14.8269	5.24e-06	0.00521	TCCCCGCCTCCTCT
EGR1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	23	36	-	14.8269	5.24e-06	0.00521	GACCCGCCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	59	72	+	14.8269	5.24e-06	0.00521	CTTCCACCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	59	72	+	14.8269	5.24e-06	0.00521	CTTCCACCCCCTCT
EGR1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	92	+	14.8269	5.24e-06	0.00521	GACCCGCCCCCAGC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	15.2885	5.24e-06	0.1	AGCACGTGAC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	15.2885	5.24e-06	0.1	AGCACGTGAC
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	12	22	-	15.1379	5.25e-06	0.022	GGGAGGGAAAG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	16	26	-	15.1379	5.25e-06	0.022	GGGAGGGAAAG
E2F6	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	79	89	-	15.1379	5.25e-06	0.022	GGGAGGGAAAG
E2F6	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	26	36	+	15.1379	5.25e-06	0.022	GGGAGGGAAAG
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	93	103	+	15.1379	5.25e-06	0.022	GGGAGGGAAAG
SRF	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	1	16	-	12.541	5.25e-06	0.245	TGCGCAAATATGGTAA
SRF	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	86	101	-	12.541	5.25e-06	0.245	TGCGCAAATATGGTAA
SRF	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	14	29	+	12.541	5.25e-06	0.245	TGCGCAAATATGGTAA
SRF	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	99	114	+	12.541	5.25e-06	0.245	TGCGCAAATATGGTAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	17	37	+	14.2041	5.25e-06	0.0043	GGAGGAGTTTGAGATGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	24	44	+	14.2041	5.25e-06	0.0043	CGAGGAGGAAGAAGAGGGTTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	24	44	+	14.2041	5.25e-06	0.0043	CGAGGAGGAAGAAGAGGGTTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	40	60	+	14.2041	5.25e-06	0.0043	GGAGGAGTTTGAGATGGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	61	81	+	14.2041	5.25e-06	0.0043	GAAGGCGGCGGGCCGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	6	26	-	14.2041	5.25e-06	0.0043	GGAGGAGGGCGTGGCGAGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	21	41	-	14.2041	5.25e-06	0.0043	GGAGGAGGGCGTGGCGAGCGG
ZNF263	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	34	54	-	14.2041	5.25e-06	0.0043	GAAGGCGGCGGGCCGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	70	90	-	14.2041	5.25e-06	0.0043	GGAGAACAGGGAAGAGGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	70	90	-	14.2041	5.25e-06	0.0043	GGAGAACAGGGAAGAGGGAAA
POU4F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	46	61	+	13.3455	5.25e-06	0.791	GTGCATAAATAAAGAG
POU4F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	46	61	+	13.3455	5.25e-06	0.791	GTGCATAAATAAAGAG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	15	26	-	14.6316	5.25e-06	0.0131	GCCACACCCCCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	4	21	+	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	4	21	+	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	27	44	-	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	27	44	-	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	71	88	+	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	94	111	-	-3.11842	5.25e-06	0.0179	GGGAGGAGGCGGGGCAGG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	27	38	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	27	38	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	27	38	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	27	38	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	29	40	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	30	41	+	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	19	30	-	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
INSM1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	75	86	-	15.1224	5.25e-06	0.108	GGGCTGGGGGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	51	65	+	14.8621	5.26e-06	0.00279	CTCCCGCCCCGCCGG
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	39	53	-	14.8621	5.26e-06	0.00279	CTCCCGCCCTCGCTC
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	62	76	+	14.8621	5.26e-06	0.00279	CTCCCGCCCTCGCTC
SP2	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	57	71	-	14.8621	5.26e-06	0.00279	TCCCCTCCCCTCCCT
Creb5	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	38	-	15.2182	5.26e-06	0.0992	GCTGACGTCATC
Creb5	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	36	+	15.2182	5.26e-06	0.0992	GCTGACGTCATC
Creb5	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	40	+	15.2182	5.26e-06	0.0992	GCTGACGTCATC
Creb5	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	88	+	15.2182	5.26e-06	0.0992	GCTGACGTCATC
Gabpa	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	19	29	+	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	28	38	+	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	47	57	+	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	53	63	+	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	102	112	+	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	52	62	-	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	58	68	-	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	77	87	-	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	77	87	-	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	86	96	-	15.0328	5.26e-06	0.0208	GCGGAAGTGAC
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	10	21	-	14.3494	5.26e-06	0.549	GTATGCAAATGA
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	11	22	-	14.3494	5.26e-06	0.549	GTATGCAAATGA
IRF2	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	58	75	-	12.3486	5.27e-06	0.31	TAAAAATGAAAGTGATAG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	28	41	-	10.0909	5.27e-06	0.0928	TCATGACGTCACGA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	28	41	-	10.0909	5.27e-06	0.0928	TCATGACGTCACGA
FOXC1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	65	-	14.18	5.27e-06	1	TAAGTAAACAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	42	59	-	-3.13158	5.27e-06	0.0179	GGAGGAGGGCAAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	42	59	-	-3.13158	5.27e-06	0.0179	GGAGGAGGGCAAGGAGGA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	71	88	-	-3.13158	5.27e-06	0.0179	GGGAGCAAGGGAGGAGAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	80	90	+	15.2449	5.27e-06	0.1	GGATGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	80	90	+	15.2449	5.27e-06	0.1	GGATGACTCAC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	80	90	+	15.2449	5.27e-06	0.1	GGATGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	80	90	+	15.2449	5.27e-06	0.1	GGATGACTCAC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	45	59	+	14.6545	5.27e-06	0.0974	GCCACCCCGTGGCGC
NFYB	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	21	35	-	15.1346	5.27e-06	0.0601	AGCCCGGCCAATCAC
GLIS3	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	23	36	+	11.697	5.27e-06	0.379	GACCCCCCACCCCG
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	44	60	-	14.5714	5.28e-06	0.338	GGGTCAGGAGGCGTTTA
SP3	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	11	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	4	14	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	27	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	27	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	27	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	27	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	40	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	40	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	41	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	33	43	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	33	43	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	33	43	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	41	51	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	51	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	59	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	61	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	61	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	57	67	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	71	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	62	72	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	62	72	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	62	72	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	62	72	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	68	78	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	86	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	87	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	89	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	98	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	89	99	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	91	101	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	104	+	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	8	18	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	10	20	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	11	21	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	11	21	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	14	24	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	14	24	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	14	24	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	16	26	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	17	27	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	18	28	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	24	34	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	28	38	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	28	38	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	29	39	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	30	40	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	30	40	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	37	47	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	48	58	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	50	60	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	50	60	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	50	60	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	50	60	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	52	62	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	54	64	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	55	65	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	55	65	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	55	65	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	55	65	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	64	74	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	64	74	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	65	75	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	71	81	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	71	81	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	72	82	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	74	84	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	74	84	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	75	85	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	78	88	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	78	88	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	101	111	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	101	111	-	14.374	5.28e-06	0.00833	GCCCCGCCCCT
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	5	14	+	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	5	14	+	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	5	14	+	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	5	14	+	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	58	67	+	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	64	73	-	15.5204	5.28e-06	0.15	GGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	64	73	-	15.5204	5.28e-06	0.15	GGGGCTTTCC
ELK3	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	15.1915	5.28e-06	0.0372	ACCGGAAGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	+	14.8429	5.28e-06	0.14	ACCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	+	14.8429	5.28e-06	0.14	ACCAGCTGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	13.4182	5.28e-06	0.0501	ACCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	13.4182	5.28e-06	0.0501	ACCGGAAGTT
ETV5	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	13.4182	5.28e-06	0.0501	GCCGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	14.3448	5.28e-06	0.0475	ACCGGAAGCG
ELK1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	15.1915	5.28e-06	0.0372	ACCGGAAGCG
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	15.7115	5.28e-06	0.0599	GTCACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	15.7115	5.28e-06	0.0599	GTCACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	15.7115	5.28e-06	0.0599	GTCACGTGAG
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	15.7115	5.28e-06	0.0599	GTCACGTGAG
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	15.7115	5.28e-06	0.0599	GTCACGTGAG
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	18	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	18	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	32	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	32	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	32	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	32	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	38	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	86	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	92	-	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	33	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	33	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	33	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	33	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	39	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	87	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	93	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
USF1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	107	+	14.9592	5.28e-06	0.0533	GCCACGTGGCC
RFX2	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	+	12.8714	5.28e-06	0.0729	CATTGCCATGGCAATT
RFX2	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	-	12.8714	5.28e-06	0.0729	CATTGCCATGGCAATT
Mafb	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	16	27	-	14.2584	5.28e-06	0.581	ATTCTGCTGACT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	13	23	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	13	23	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	17	27	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	17	27	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	27	37	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	34	44	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	34	44	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	34	44	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	34	44	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	70	80	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	74	84	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	88	98	+	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	17	27	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	31	41	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	31	41	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	35	45	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	42	52	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	50	60	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	50	60	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	50	60	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	50	60	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	78	88	-	15.0606	5.29e-06	0.0344	GGCCCCGCCCA
USF2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	38	+	15.0612	5.29e-06	0.045	CTCACGTGACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	+	15.234	5.29e-06	0.14	TGTGAGTCATT
FOS	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	+	15.234	5.29e-06	0.14	GCTGAGTCATT
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	+	11.1429	5.3e-06	0.428	TGACACCTGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	+	11.1429	5.3e-06	0.428	TGACACCTGTCA
PKNOX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	+	11.1429	5.3e-06	0.428	TGACACCTGTCA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	36	53	+	-3.15789	5.3e-06	0.0179	GGCATGGAGGCAGGAAGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	62	79	-	-3.15789	5.3e-06	0.0179	GGCATGGAGGCAGGAAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	62	79	-	-3.15789	5.3e-06	0.0179	GGCATGGAGGCAGGAAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	62	79	-	-3.15789	5.3e-06	0.0179	GGCATGGAGGCAGGAAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	62	79	-	-3.15789	5.3e-06	0.0179	GGCATGGAGGCAGGAAGC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	32	42	+	14.931	5.3e-06	0.00721	GCCACGCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	73	83	-	14.931	5.3e-06	0.00721	GCCACGCCTCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	52	66	-	13.5	5.3e-06	0.0251	GCCCTCCCCCGCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	52	66	-	13.5	5.3e-06	0.0251	GCCCTCCCCCGCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	19	33	+	13.5	5.3e-06	0.0251	GCCCTCCCCCGCATC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	55	69	+	13.5	5.3e-06	0.0251	GCCCTCCCCCGCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	55	69	+	13.5	5.3e-06	0.0251	GCCCTCCCCCGCATC
ELF4	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	42	53	+	14.7213	5.31e-06	0.0509	TTCCCGGAAGTT
ELF4	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	73	-	14.7213	5.31e-06	0.0509	TTCCCGGAAGTT
ATF4	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	2	14	+	15.1639	5.31e-06	0.247	TGCTGACGCAATG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	60	72	-	15.1639	5.31e-06	0.247	TGCTGACGCAATG
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	38	58	-	14.1837	5.32e-06	0.00435	GGAGGGGAAAGGGGGAGAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	78	-	14.1837	5.32e-06	0.00435	AAGGCAGCGGCGGGGGGGGGG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	82	-	14.6327	5.32e-06	0.0681	TCTGACGTCATC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	82	-	14.6327	5.32e-06	0.0681	TCTGACGTCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	61	74	+	14.8077	5.32e-06	0.00521	GCACCGCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	61	74	+	14.8077	5.32e-06	0.00521	GCACCGCCTCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	58	71	-	14.8077	5.32e-06	0.00521	CGCCCACCCCCTGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	95	108	-	14.8077	5.32e-06	0.00521	CTTCCGCCTCCACC
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	11	+	14.8621	5.32e-06	0.0711	CGCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	11	+	14.8621	5.32e-06	0.0711	CGCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	11	+	14.8621	5.32e-06	0.0711	CGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	58	-	14.8621	5.32e-06	0.0711	CGCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	58	-	14.8621	5.32e-06	0.0711	CGCAGCTGCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	46	57	-	14.6184	5.32e-06	0.0131	GACACGCCCAGT
Tcf21	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	81	94	-	14.1579	5.32e-06	0.557	AAAACAGCTGCTGG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	37	50	+	15.0303	5.32e-06	0.0147	GCGCGCTGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	37	50	+	15.0303	5.32e-06	0.0147	GCGCGCTGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	37	50	+	15.0303	5.32e-06	0.0147	GCGCGCTGGGCCTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	20	31	+	14.8364	5.32e-06	0.0544	TACCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	20	31	+	14.8364	5.32e-06	0.0544	TACCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	20	31	+	14.8364	5.32e-06	0.0544	TACCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	74	85	+	14.8364	5.32e-06	0.0544	TACCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	74	85	+	14.8364	5.32e-06	0.0544	TACCCGGAAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	34	48	-	14.8448	5.32e-06	0.00282	GGCCCGCCCCGCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	34	48	-	14.8448	5.32e-06	0.00282	GGCCCGCCCCGCAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	34	48	-	14.8448	5.32e-06	0.00282	GGCCCGCCCCGCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	34	48	-	14.8448	5.32e-06	0.00282	GGCCCGCCCCGCAGC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	12	26	+	14.8485	5.32e-06	0.0324	GTCTCGCGACTCCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	12	26	+	14.8485	5.32e-06	0.0324	GTCTCGCGACTCCTG
TFEC	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	13.9146	5.32e-06	0.129	AGCACGTGAC
TFEC	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	13.9146	5.32e-06	0.129	AGCACGTGAC
PLAG1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	56	69	+	12.7653	5.33e-06	0.0582	GGGGCCATCCGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	46	59	-	12.7653	5.33e-06	0.0582	GGGGCCATCCGGGG
SP4	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	52	68	+	12.0182	5.33e-06	0.00768	ATGGCCCCACCCACTCC
SP4	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	47	63	-	12.0182	5.33e-06	0.00768	ATGGCCCCACCCACTCC
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	-	14.9636	5.33e-06	0.0569	TGCCCCAGGCT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	19	-	13.7091	5.35e-06	0.0904	ACCCGGAAATG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	19	-	13.7091	5.35e-06	0.0904	ACCCGGAAATG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	4	14	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	4	14	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	20	30	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	20	30	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	43	53	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	39	49	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	56	66	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	64	74	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	64	74	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	64	74	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	64	74	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	66	76	+	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	62	72	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	100	110	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	100	110	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	100	110	-	15.1636	5.35e-06	0.00428	GCGCCCGCGCC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	13	23	-	14.9184	5.35e-06	0.126	CTGCCGGGAAG
STAT3	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	41	51	-	14.9184	5.35e-06	0.126	CTGCCGGGAAG
STAT3	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	64	74	+	14.9184	5.35e-06	0.126	CTGCCGGGAAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	2	16	+	15.1154	5.35e-06	0.0601	GAACTGTCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	2	16	+	15.1154	5.35e-06	0.0601	GAACTGTCCAATCAG
NFYB	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	15	29	+	15.1154	5.35e-06	0.0601	GAACTGTCCAATCAG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	+	15.3878	5.36e-06	0.14	CATGAGTCATT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	16	30	+	15.1702	5.36e-06	0.254	GGGGGTGACGTAATC
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	16	30	+	15.1702	5.36e-06	0.254	GGGGGTGACGTAATC
SP4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	9	25	-	12	5.36e-06	0.00768	TTGGCTCCGCCCCATTG
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	27	43	+	12	5.36e-06	0.00768	CCAGCCCCGCCCCGCTC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	53	69	+	12	5.36e-06	0.00768	CCAGCCCCGCCCCGCTC
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	46	62	-	12	5.36e-06	0.00768	CCAGCCCCGCCCCGCTC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	47	63	-	12	5.36e-06	0.00768	GCGGCTCCGCCCACCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	68	84	-	12	5.36e-06	0.00768	CAGACCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	68	84	-	12	5.36e-06	0.00768	CAGACCCCGCCCCGCCC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	72	88	-	12	5.36e-06	0.00768	CCAGCCCCGCCCCGCTC
RREB1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	2	21	+	11.3211	5.36e-06	0.0343	GCCCAAACCAACCAATCAAG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	8	27	-	11.3211	5.36e-06	0.0343	GCCCAAACCAACCAATCAAG
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	8	27	-	11.3211	5.36e-06	0.0343	GCCCAAACCAACCAATCAAG
RREB1	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	88	107	+	11.3211	5.36e-06	0.0343	GCCCAAACCAACCAATCAAG
RREB1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	94	113	-	11.3211	5.36e-06	0.0343	GCCCAAACCAACCAATCAAG
RXRG	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	51	-	10.4894	5.37e-06	0.185	GGGGTCAAGGGGCG
RXRG	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	64	77	+	10.4894	5.37e-06	0.185	GGGGTCAAGGGGCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	69	+	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	94	+	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	113	+	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	2	12	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	8	18	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	17	27	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	21	31	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	23	33	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	29	39	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	35	45	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	38	48	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	51	-	14.3659	5.37e-06	0.00833	CCCCCACCCCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	16	33	-	-3.22368	5.37e-06	0.0181	GGAGGAAGGGAGGGAGAG
RUNX3	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	84	93	-	14.4423	5.38e-06	0.439	AGACCGCAAA
RUNX3	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	22	31	+	14.4423	5.38e-06	0.439	AGACCGCAAA
MYF6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	-	15.197	5.38e-06	1	GACAGCTGTT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	-	14.5273	5.38e-06	0.0397	AGCCCGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	-	14.5273	5.38e-06	0.0397	AGCCCGAGGCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	26	44	-	13.9672	5.38e-06	0.05	ATGCCACCTGAGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	26	44	-	13.9672	5.38e-06	0.05	ATGCCACCTGAGGGCGGGG
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	9	23	-	13.8421	5.38e-06	0.0875	GCGATGACTCGGCCG
Znf423	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	48	62	+	12.2921	5.38e-06	0.163	GGCACCCCGGGGGGC
Znf423	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	53	67	-	12.2921	5.38e-06	0.163	GGCACCCCGGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	65	85	-	14.1633	5.39e-06	0.0044	GAAGGCGAGGCAGGAAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	65	85	-	14.1633	5.39e-06	0.0044	GAAGGCGAGGCAGGAAGGAGG
HES7	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	93	104	+	11.7241	5.39e-06	0.171	TGGCGCGTGCCT
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	14	28	-	13.4655	5.39e-06	0.0251	CCCCCCCCCCGCAGT
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	87	101	+	13.4655	5.39e-06	0.0251	CCCCCCCCCCGCAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	11	25	-	14.1803	5.39e-06	0.0271	CGCCACGCCCACACG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	11	25	-	14.1803	5.39e-06	0.0271	CGCCACGCCCACACG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	11	25	-	14.1803	5.39e-06	0.0271	CGCCACGCCCACACG
Klf12	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	27	41	-	14.1803	5.39e-06	0.0271	GGCCCCGCCCCTTCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	23	+	14.7885	5.39e-06	0.00521	GCTCCGCCCCCTGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	23	+	14.7885	5.39e-06	0.00521	GCTCCGCCCCCTGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	3	16	-	14.7885	5.39e-06	0.00521	CCTCCTCCTCCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	7	20	-	14.7885	5.39e-06	0.00521	GCTCCGCCCCCTGG
EGR1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	13	26	-	14.7885	5.39e-06	0.00521	CGCCCGCCGCCGCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	32	45	+	14.7885	5.39e-06	0.00521	CCTCCTCCTCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	36	49	+	14.7885	5.39e-06	0.00521	CCGCCTCCCACACG
EGR1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	52	65	+	14.7885	5.39e-06	0.00521	CGCCCGCCGCCGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	62	75	+	14.7885	5.39e-06	0.00521	GCGCCGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	49	62	-	14.7885	5.39e-06	0.00521	CCCCCGCCTCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	49	62	-	14.7885	5.39e-06	0.00521	CCCCCGCCTCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	49	62	-	14.7885	5.39e-06	0.00521	CCCCCGCCTCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	49	62	-	14.7885	5.39e-06	0.00521	CCCCCGCCTCCTTC
EGR1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	50	63	-	14.7885	5.39e-06	0.00521	CGCCCGCCGCCGCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	67	80	+	14.7885	5.39e-06	0.00521	CCGCCGCCGCCTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	88	+	14.7885	5.39e-06	0.00521	GCTCCGCCCCCTGG
EGR1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	89	102	+	14.7885	5.39e-06	0.00521	CGCCCGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	97	110	-	14.7885	5.39e-06	0.00521	CAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	97	110	-	14.7885	5.39e-06	0.00521	CAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	97	110	-	14.7885	5.39e-06	0.00521	CAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	97	110	-	14.7885	5.39e-06	0.00521	CAGCCGCCGCCGCC
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	-	14.4808	5.39e-06	0.0526	TGCCCCAGGCT
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	18	32	-	14.8276	5.39e-06	0.00284	CCTCCGCCTCCACCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	33	47	+	14.8276	5.39e-06	0.00284	GCTCCGCCCTTCCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	33	47	+	14.8276	5.39e-06	0.00284	GCTCCGCCCTTCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	33	47	+	14.8276	5.39e-06	0.00284	GCTCCGCCCTTCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	33	47	+	14.8276	5.39e-06	0.00284	GCTCCGCCCTTCCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	28	42	-	14.8276	5.39e-06	0.00284	CCACCGCCCCCCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	28	42	-	14.8276	5.39e-06	0.00284	CCACCGCCCCCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	75	+	14.8276	5.39e-06	0.00284	CCCCCGCCCCCGGAA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	75	+	14.8276	5.39e-06	0.00284	CCCCCGCCCCCGGAA
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	83	97	+	14.8276	5.39e-06	0.00284	CCTCCGCCTCCACCC
Gfi1b	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	43	53	-	14.9828	5.39e-06	0.347	CAATCTCAGCC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	71	84	-	14.8621	5.39e-06	0.104	CTGCTGGGAAAGCG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	71	84	-	14.8621	5.39e-06	0.104	CTGCTGGGAAAGCG
RFX4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	+	14.5606	5.39e-06	0.065	CGTTGCCACGGAGACC
Foxj3	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	78	94	+	14.5974	5.39e-06	1	CTACAGTAAACAAATGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	80	99	-	11.3028	5.4e-06	0.0343	AGCCCACACAAACACACCCA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	80	99	-	11.3028	5.4e-06	0.0343	AGCCCACACAAACACACCCA
FOSL1	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	34	44	-	15.3818	5.4e-06	0.0767	AGTGAGTCAGG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	35	45	-	15.3818	5.4e-06	0.0767	AGTGAGTCAGG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	70	80	+	15.3818	5.4e-06	0.0767	AGTGAGTCAGG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	71	81	+	15.3818	5.4e-06	0.0767	AGTGAGTCAGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	7	21	+	14.4571	5.41e-06	0.0744	GGGGGGCAGAGGGAA
E2F4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	8	18	-	15.2069	5.41e-06	0.0225	CGGCGGGAGAG
E2F4	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	85	95	+	15.2069	5.41e-06	0.0225	CGGCGGGAGAG
E2F4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	97	107	+	15.2069	5.41e-06	0.0225	CGGCGGGAGAG
Myc	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	21	30	+	15.2364	5.41e-06	0.189	CCATGTGGTC
Myc	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	65	74	+	15.2364	5.41e-06	0.189	CCACGTGCTC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	4	13	-	15.2364	5.41e-06	0.189	CCACGTGCTC
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	4	13	-	15.2364	5.41e-06	0.189	CCACGTGCTC
Myc	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	15	-	15.2364	5.41e-06	0.189	CCACGTGCTC
E2F6	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	3	13	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	14	24	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	14	24	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	76	86	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	76	86	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	76	86	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	76	86	-	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	39	49	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	39	49	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	39	49	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	39	49	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	42	52	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	66	76	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	77	87	+	15.1034	5.41e-06	0.022	GGGAGGGAAGA
ETV2	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	41	51	+	15.3115	5.43e-06	0.118	AACCGGAAACT
ETV2	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	74	-	15.3115	5.43e-06	0.118	AACCGGAAACT
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	17	27	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	25	35	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	27	37	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	18	28	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	32	42	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	32	42	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	32	42	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	32	42	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	34	44	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	24	34	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	34	44	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	34	44	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	34	44	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	36	46	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	36	46	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	36	46	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	36	46	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	26	36	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	28	38	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	33	43	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	33	43	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	33	43	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	33	43	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	35	45	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	35	45	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	35	45	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	35	45	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	47	57	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	53	63	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	44	54	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	57	67	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	48	58	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	61	71	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	54	64	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	65	75	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	58	68	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	66	76	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	84	94	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	84	94	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	86	96	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	86	96	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	92	102	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	92	102	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	83	93	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	83	93	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	94	104	+	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	85	95	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	85	95	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	93	103	-	15.1455	5.43e-06	0.00428	GCGCGCGCGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	39	55	-	11.9636	5.43e-06	0.00776	TAGGCCACACCCCTCCT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	30	43	+	11.4364	5.43e-06	0.0927	GAAAACAGGAAGCA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	98	-	11.4364	5.43e-06	0.0927	GAAAACAGGAAGCA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	37	50	+	15.0385	5.43e-06	0.118	GGTGGGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	37	50	+	15.0385	5.43e-06	0.118	GGTGGGTGACTCAG
Mitf	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	7	16	-	12.5918	5.43e-06	0.0659	GGTCACGAGG
ZEB1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	14	22	+	15.2	5.43e-06	0.244	CCACACCTG
ZEB1	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	79	87	+	15.2	5.43e-06	0.244	CCACACCTG
ZEB1	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	95	103	+	15.2	5.43e-06	0.244	CCACACCTG
ZEB1	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	12	20	-	15.2	5.43e-06	0.244	CCACACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	14	22	-	15.2	5.43e-06	0.244	CCACACCTG
ZEB1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	93	101	-	15.2	5.43e-06	0.244	CCACACCTG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	65	84	+	11.2844	5.44e-06	0.0343	CCCCAACCCACCACAGGCAG
Klf12	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	60	74	+	14.1639	5.44e-06	0.0271	GGCCCCGCCCCTCAC
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	47	57	-	15.2931	5.44e-06	0.867	TGAAGGTCAAA
HOXD11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	38	-	14.3803	5.44e-06	0.869	ATCGTAAAAA
HOXD11	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	38	-	14.3803	5.44e-06	0.869	ATCGTAAAAA
HOXD11	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	77	86	+	14.3803	5.44e-06	0.869	ATCGTAAAAA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	45	59	+	13.9	5.44e-06	0.0867	GCCACCCCGTGGCGC
STAT1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	20	30	+	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	41	51	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	64	74	+	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	60	70	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	60	70	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	60	70	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	60	70	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	60	70	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
STAT1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	85	95	-	15.4727	5.44e-06	0.148	CTTCCGGGAAG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.9286	5.44e-06	0.042	GCCGGAAGTG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	16	26	-	15.0192	5.45e-06	0.00352	GCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	16	26	-	15.0192	5.45e-06	0.00352	GCTCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	31	41	-	15.0192	5.45e-06	0.00352	GCTCCACCCCC
EGR1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	25	38	-	14.7692	5.45e-06	0.00525	CTCCTGCCCCCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	34	47	-	14.7692	5.45e-06	0.00525	CCGCCTCCTCCACC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	66	79	+	14.7692	5.45e-06	0.00525	CCGCCTCCTCCACC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	76	89	+	13.1064	5.45e-06	0.0778	TGCCGCCCGCGGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	76	89	+	13.1064	5.45e-06	0.0778	TGCCGCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	76	89	+	13.1064	5.45e-06	0.0778	TGCCGCCCGCGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	24	44	-	14.1429	5.45e-06	0.00444	TGGGGAGAGCAGGGGGGGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	78	98	-	14.1429	5.45e-06	0.00444	AGGGCCGGGGGAGGGAGAGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	81	101	-	14.1429	5.45e-06	0.00444	AGAGGAGATGAAGAAAGAAGA
SP2	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	17	+	14.8103	5.46e-06	0.00284	ACCCCGCCCCCTTTT
SP2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	5	19	+	14.8103	5.46e-06	0.00284	CCCCCACCTCCTTCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	40	+	14.8103	5.46e-06	0.00284	CCCCCGCCCCGGGGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	12	26	-	14.8103	5.46e-06	0.00284	GCTCCACCCCCTGGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	12	26	-	14.8103	5.46e-06	0.00284	GCTCCACCCCCTGGC
SP2	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	17	31	-	14.8103	5.46e-06	0.00284	CCCCCACCCCCGCTC
SP2	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	24	38	-	14.8103	5.46e-06	0.00284	ACCCCGCCCCCTTTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	25	39	-	14.8103	5.46e-06	0.00284	GCACCGCCTCCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	25	39	-	14.8103	5.46e-06	0.00284	GCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	25	39	-	14.8103	5.46e-06	0.00284	GCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	30	44	-	14.8103	5.46e-06	0.00284	GCTCCGCCCACTTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	30	44	-	14.8103	5.46e-06	0.00284	GCTCCGCCCACTTCG
SP2	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	37	51	-	14.8103	5.46e-06	0.00284	CCCCCGCCCCGGGGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	61	75	+	14.8103	5.46e-06	0.00284	GCACCGCCTCCTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	61	75	+	14.8103	5.46e-06	0.00284	GCACCGCCTCCTCCT
SP2	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	78	+	14.8103	5.46e-06	0.00284	CCCCCGCCCCGGGGC
SP2	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	91	+	14.8103	5.46e-06	0.00284	ACCCCGCCCCCTTTT
SP2	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	98	+	14.8103	5.46e-06	0.00284	CCCCCACCCCCGCTC
SP2	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	98	112	-	14.8103	5.46e-06	0.00284	ACCCCGCCCCCTTTT
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	14	23	+	14.8716	5.46e-06	0.0205	GCCCCCCCAT
EGR2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	51	61	+	14.431	5.46e-06	0.0586	AGGCCCACGCA
EGR2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	54	64	-	14.431	5.46e-06	0.0586	AGGCCCACGCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	21	38	-	-3.30263	5.46e-06	0.0183	GGAAGAAGGGAGGGCTGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	53	71	-	14.5484	5.46e-06	0.113	GGGCGCGGCGGGGCGGGAA
Zfx	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	52	65	+	15	5.47e-06	0.015	GAAGCCCCGGCCTC
KLF14	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	3	16	-	14.5	5.47e-06	0.0134	CGCCCCGCCCCCCG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	13	26	-	14.5	5.47e-06	0.0134	CGCCCCGCCCCCCG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	31	44	+	14.5	5.47e-06	0.0134	CGCCCCGCCCCCCG
KLF14	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	47	60	+	14.5	5.47e-06	0.0134	CGCCCCGCCCCCCG
KLF14	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	55	68	-	14.5	5.47e-06	0.0134	CGCCCCGCCCCCCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	50	66	+	11.9455	5.47e-06	0.00776	GGGACCACGCCCTCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	57	73	+	11.9455	5.47e-06	0.00776	CGCACCCCGCCCCCATC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	11	21	+	14.8364	5.47e-06	0.0246	CCACTTCCTGC
ELK4	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	39	49	+	14.8364	5.47e-06	0.0246	GGACTTCCGGT
ELK4	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	49	59	-	14.8364	5.47e-06	0.0246	CCACTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	76	-	14.8364	5.47e-06	0.0246	GGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	76	-	14.8364	5.47e-06	0.0246	GGACTTCCGGT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	11	26	-	14.4909	5.48e-06	0.0292	CCACGCCCACACCCTT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	47	62	+	14.4909	5.48e-06	0.0292	CCACGCCCACACCCTT
RFX2	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	-	12.7857	5.48e-06	0.0729	GGTCTCCGTGGCAACG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	+	15.1311	5.48e-06	0.0537	CGCCCCGCGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	+	15.1311	5.48e-06	0.0537	CGCCCCGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	+	15.1311	5.48e-06	0.0537	CGCCCCGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	+	15.1311	5.48e-06	0.0537	CGCCCCGCGGGCT
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	18	33	+	10.6724	5.49e-06	0.231	GTCCCAGAATCCCCTG
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	18	33	+	10.6724	5.49e-06	0.231	GTCCCAGAATCCCCTG
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	18	33	+	10.6724	5.49e-06	0.231	GTCCCAGAATCCCCTG
ID4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	14.3934	5.49e-06	0.351	GACACCTGTC
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	14.3934	5.49e-06	0.351	GACACCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	14.3934	5.49e-06	0.351	GACACCTGTC
IRF1	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	26	46	-	14.3548	5.49e-06	0.0913	AATTACTTTTACTTTTCCTCA
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	+	12.8276	5.49e-06	0.0582	TGTTACCAGGACAACC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	55	72	+	-3.32895	5.5e-06	0.0183	GGAAGGGGTGGAGCTAGA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	43	60	-	-3.32895	5.5e-06	0.0183	GGAAGGGGTGGAGCTAGA
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	63	76	-	11.6061	5.5e-06	0.379	GACCCTCCAGGACG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	63	76	-	11.6061	5.5e-06	0.379	GACCCTCCAGGACG
NR2C2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	9	23	-	14.4286	5.5e-06	0.0744	GAGGGGCAGGGGTGA
NR2C2	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	41	55	+	14.4286	5.5e-06	0.0744	GAGGGGCAGGGGTGA
NR2C2	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	60	74	-	14.4286	5.5e-06	0.0744	GAGGGGCAGGGGTGA
NR2C2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	92	106	+	14.4286	5.5e-06	0.0744	GAGGGGCAGGGGTGA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	24	34	+	14.3496	5.51e-06	0.00833	GCCACGCCTAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	24	34	+	14.3496	5.51e-06	0.00833	GCCACGCCTAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	24	34	+	14.3496	5.51e-06	0.00833	GCCACGCCTAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	24	34	+	14.3496	5.51e-06	0.00833	GCCACGCCTAC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	+	14.4	5.51e-06	0.0893	CGCCCGCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	+	14.4	5.51e-06	0.0893	CGCCCGCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	-	14.4	5.51e-06	0.0893	CGCCCGCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	-	14.4	5.51e-06	0.0893	CGCCCGCGGGCG
SCRT1	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	83	97	+	14.2623	5.51e-06	0.494	ATTCAACAAGTGCCC
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	70	80	+	15.1346	5.51e-06	0.172	GTTATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	70	80	+	15.1346	5.51e-06	0.172	GTTATGACTCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	15	35	+	14.1224	5.52e-06	0.00449	TGAGGAGGTGTGGAGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	15	35	+	14.1224	5.52e-06	0.00449	TGAGGAGGTGTGGAGGGGGCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	25	38	-	14.75	5.52e-06	0.00532	CCCCTTCCCCCTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	17	31	-	14.1311	5.52e-06	0.0271	GACCCCGCCCATTGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	17	31	-	14.1311	5.52e-06	0.0271	GACCCCGCCCATTGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	17	31	-	14.1311	5.52e-06	0.0271	GACCCCGCCCATTGG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	17	31	-	14.1311	5.52e-06	0.0271	GACCCCGCCCATTGG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	45	59	-	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	45	59	-	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	97	111	-	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	4	18	+	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	4	18	+	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	56	70	+	14.1311	5.52e-06	0.0271	GCCCACGCCCCTTTC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	78	92	+	14.1311	5.52e-06	0.0271	GGCCACACCCCGCCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	-	14.4615	5.53e-06	0.0526	TGCCCGAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	-	14.4615	5.53e-06	0.0526	TGCCCGAGGCT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	64	78	+	13.7763	5.53e-06	0.0875	CCAGTGACTCAGCGT
LEF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	25	39	+	14.2581	5.53e-06	1	TGACATCAAAGTGTA
LEF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	25	39	+	14.2581	5.53e-06	1	TGACATCAAAGTGTA
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	40	52	+	14.5152	5.53e-06	0.196	CGGGGGAACCCCT
ATF7	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	+	14.6143	5.54e-06	0.0727	CCGTGACGTCACGG
ATF7	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	-	14.6143	5.54e-06	0.0727	CCGTGACGTCACGG
ATF7	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	+	14.6143	5.54e-06	0.0727	CCGTGACGTCACGG
ATF7	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	-	14.6143	5.54e-06	0.0727	CCGTGACGTCACGG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	73	-	14.5902	5.54e-06	0.0509	GTCCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	73	-	14.5902	5.54e-06	0.0509	GTCCCGGAAGTC
RFX2	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	-	12.7571	5.54e-06	0.0729	AATTGCCATGGCAATG
RFX2	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	+	12.7571	5.54e-06	0.0729	AATTGCCATGGCAATG
SP4	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	13	29	-	11.9091	5.54e-06	0.00776	CAAGCCACGCCTTTTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	62	78	+	11.9091	5.54e-06	0.00776	TCAGCCCCGCCCTCCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	62	78	+	11.9091	5.54e-06	0.00776	TCAGCCCCGCCCTCCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	62	78	+	11.9091	5.54e-06	0.00776	TCAGCCCCGCCCTCCGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	22	32	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	22	32	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	61	71	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	61	71	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	61	71	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	61	71	+	14.9836	5.54e-06	0.0208	GCGGAAGCGGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	26	40	-	13.3966	5.54e-06	0.0251	GCCCGCCCCCGCCGC
XBP1	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	34	47	+	14.7308	5.55e-06	0.446	GCAGACACGTCAGC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	68	81	-	14.7308	5.55e-06	0.446	GCAGACACGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	68	81	-	14.7308	5.55e-06	0.446	GCAGACACGTCAGC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	68	81	-	14.7308	5.55e-06	0.446	GCAGACACGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	68	81	-	14.7308	5.55e-06	0.446	GCAGACACGTCAGC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	42	-	15.1277	5.55e-06	0.254	TTTGATGACGTCACG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	68	82	+	15.1277	5.55e-06	0.254	GAGGATGACGTCAGA
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	68	82	+	15.1277	5.55e-06	0.254	GAGGATGACGTCAGA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	73	87	+	15.1277	5.55e-06	0.254	TTTGATGACGTCACG
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	17	30	+	14.4655	5.55e-06	0.0136	GGCCCCGCCCACGC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	41	52	+	14.8033	5.55e-06	0.0691	ACCCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	41	52	+	14.8033	5.55e-06	0.0691	ACCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	41	52	+	14.8033	5.55e-06	0.0691	ACCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	41	52	+	14.8033	5.55e-06	0.0691	ACCCCGGAAGTG
EHF	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	74	-	14.8033	5.55e-06	0.0691	ACCCCGGAAGTG
STAT3	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	57	67	-	14.898	5.56e-06	0.126	CTTCCTGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	58	+	14.898	5.56e-06	0.126	CTTCCTGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	58	+	14.898	5.56e-06	0.126	CTTCCTGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	58	+	14.898	5.56e-06	0.126	CTTCCTGGAAG
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	34	44	-	14.9231	5.56e-06	0.00359	GCCCCGCCCAT
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	54	64	-	14.9231	5.56e-06	0.00359	GCCCCGCCCAT
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	81	+	14.9231	5.56e-06	0.00359	GCCCCGCCCAT
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	58	71	+	12.2143	5.56e-06	0.365	TGCCAGCGCGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	58	71	+	12.2143	5.56e-06	0.365	TGCCAGCGCGCCAA
PLAG1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	24	37	-	12.6633	5.56e-06	0.0598	GGGGCCCAAGGAGA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	28	41	+	9.90909	5.56e-06	0.0928	TCGTGACGTCATGA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	28	41	+	9.90909	5.56e-06	0.0928	TCGTGACGTCATGA
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	28	41	+	14.6	5.56e-06	0.0727	TCGTGACGTCATGA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	28	41	+	14.6	5.56e-06	0.0727	TCGTGACGTCATGA
PKNOX2	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	+	11.1148	5.57e-06	0.475	TGTCAGATGTCA
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	-	14.1475	5.57e-06	0.333	GGCACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	-	14.1475	5.57e-06	0.333	GGCACGTGTG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	23	+	14	5.57e-06	0.176	CCCCCCCCACAGTG
Klf1	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	66	76	+	15	5.57e-06	0.0344	CGCCCCACCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	2	12	-	15	5.57e-06	0.0344	CGCCCCACCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	39	49	-	15	5.57e-06	0.0344	CGCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	39	49	-	15	5.57e-06	0.0344	CGCCCCACCCT
Crem	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	27	+	14.4262	5.58e-06	0.141	CATGACGTAA
Crem	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	50	+	14.4262	5.58e-06	0.141	CATGACGTAA
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	15.4091	5.58e-06	1	GACATATGCC
Crem	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	65	74	-	14.4262	5.58e-06	0.141	CATGACGTAA
Crem	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	88	97	-	14.4262	5.58e-06	0.141	CATGACGTAA
FEV	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.3462	5.58e-06	0.0647	ACCGGATGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.6056	5.58e-06	0.0449	ACCGGAAGTT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.6056	5.58e-06	0.0449	ACCGGAAGTT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	35	-	15.0984	5.58e-06	0.0537	GGCCCTCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	35	-	15.0984	5.58e-06	0.0537	GGCCCTCGGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	43	55	+	15.0984	5.58e-06	0.0537	GGCCCTCGGGGCG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	67	78	+	14.5738	5.58e-06	0.0509	AAACCGGAAGCG
SP2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	6	20	-	14.7759	5.59e-06	0.00289	CCCCCTCCCCTCCTC
SP2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	35	49	-	14.7759	5.59e-06	0.00289	CCCCCTCCCCTCCTC
SP2	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	69	+	14.7759	5.59e-06	0.00289	CCTCCGCCCCCGGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	70	+	14.7759	5.59e-06	0.00289	GCCCCGCCCCGAGTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	70	+	14.7759	5.59e-06	0.00289	GCCCCGCCCCGAGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	70	+	14.7759	5.59e-06	0.00289	GCCCCGCCCCGAGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	70	+	14.7759	5.59e-06	0.00289	GCCCCGCCCCGAGTC
SP2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	80	+	14.7759	5.59e-06	0.00289	CCCCCTCCCCTCCTC
SP2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	109	+	14.7759	5.59e-06	0.00289	CCCCCTCCCCTCCTC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	82	-	15.1091	5.59e-06	0.0992	ACTGACGTCATC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	82	-	15.1091	5.59e-06	0.0992	ACTGACGTCATC
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	82	-	15.1091	5.59e-06	0.0992	ACTGACGTCATC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	57	67	+	13.8966	5.59e-06	0.215	GCCTGTGGTCT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	57	67	+	13.8966	5.59e-06	0.215	GCCTGTGGTCT
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	13	27	+	14.5769	5.59e-06	0.363	GGGGCAGCGCGACCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	57	77	+	14.102	5.59e-06	0.00454	AAGGGAGGGGGCGGGGGTGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	57	77	+	14.102	5.59e-06	0.00454	AAGGGAGGGGGCGGGGGTGGC
EGR1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	25	+	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	90	103	-	14.7308	5.6e-06	0.00534	CCCACACCCACACC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	46	58	-	14.8163	5.6e-06	0.076	AGCAGCTGCCGGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	46	58	-	14.8163	5.6e-06	0.076	AGCAGCTGCCGGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	85	97	-	14.8163	5.6e-06	0.076	CGCAGCTGCCGGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	94	106	-	14.8163	5.6e-06	0.076	AGCAGCTGCCGGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	94	106	-	14.8163	5.6e-06	0.076	AGCAGCTGCCGGC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.7885	5.6e-06	0.0363	GCCGGAAGTG
KLF14	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	45	58	+	14.4483	5.6e-06	0.0136	GGTCCCGCCCACTG
KLF14	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	57	70	-	14.4483	5.6e-06	0.0136	GGTCCCGCCCACTG
Zfx	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	16	29	+	14.9697	5.6e-06	0.0151	GGGGGCGTGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	35	48	+	14.9697	5.6e-06	0.0151	GGGGGCGTGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	45	58	+	14.9697	5.6e-06	0.0151	GGGGGCGTGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	57	70	-	14.9697	5.6e-06	0.0151	GGGGGCGTGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	86	99	-	14.9697	5.6e-06	0.0151	GGGGGCGTGGCCTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	26	43	-	-3.40789	5.6e-06	0.0185	GGGAGGGAGGAAGCCCGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	+	11.4056	5.61e-06	0.0721	GGCACGCGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	-	11.4056	5.61e-06	0.0721	GGCACGCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	9	25	+	11.8727	5.61e-06	0.00776	ATGGCCCCGCCTCCCAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	9	25	+	11.8727	5.61e-06	0.00776	ATGGCCCCGCCTCCCAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	9	25	+	11.8727	5.61e-06	0.00776	ATGGCCCCGCCTCCCAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	9	25	+	11.8727	5.61e-06	0.00776	ATGGCCCCGCCTCCCAG
SP4	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	17	33	-	11.8727	5.61e-06	0.00776	CTAGCCCAGCCCCCTTG
SP4	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	37	53	-	11.8727	5.61e-06	0.00776	CTAGCCCAGCCCCCTTG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	58	74	+	11.8727	5.61e-06	0.00776	GAAGCCCCACCCACCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	58	74	+	11.8727	5.61e-06	0.00776	GAAGCCCCACCCACCCC
SP4	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	62	78	+	11.8727	5.61e-06	0.00776	CTAGCCCAGCCCCCTTG
SP4	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	82	98	+	11.8727	5.61e-06	0.00776	CTAGCCCAGCCCCCTTG
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	71	87	-	11.8727	5.61e-06	0.00776	GAAGCCCCACCCACCCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	14.3846	5.61e-06	0.0768	CTCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	14.3846	5.61e-06	0.0768	CTCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	14.3846	5.61e-06	0.0768	CTCACGTGAC
TFEB	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	14.3846	5.61e-06	0.0768	CTCACGTGAC
TFEB	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	14.3846	5.61e-06	0.0768	CTCACGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	14.3846	5.61e-06	0.0768	AGCACGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	14.3846	5.61e-06	0.0768	AGCACGTGAC
NFYA	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	13	30	-	14.4268	5.61e-06	0.0417	TGCGCGATGATTGGCTGG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	2	16	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCTGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	8	22	-	14.0984	5.62e-06	0.0271	GGCCACACCCTAGGG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	8	22	-	14.0984	5.62e-06	0.0271	GGCCACACCCTAGGG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	17	31	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCTGCCC
Klf12	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	21	35	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTCCC
Klf12	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	49	63	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTCCC
Klf12	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	61	75	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTCCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	71	85	-	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTCCC
Klf12	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	40	54	+	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	49	63	+	14.0984	5.62e-06	0.0271	GGCCACACCCTAGGG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	49	63	+	14.0984	5.62e-06	0.0271	GGCCACACCCTAGGG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	61	75	+	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTTCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	61	75	+	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTTCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	61	75	+	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTTCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	61	75	+	14.0984	5.62e-06	0.0271	GGCCCCGCCCCTTCC
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	34	49	-	15	5.63e-06	0.428	GGTTATGCAAATGCCG
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	34	49	-	15	5.63e-06	0.428	GGTTATGCAAATGCCG
Pou2f3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	34	49	-	15	5.63e-06	0.428	GGTTATGCAAATGCCG
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	34	49	-	15	5.63e-06	0.428	GGTTATGCAAATGCCG
Pou2f3	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	66	81	+	15	5.63e-06	0.428	GGTTATGCAAATGCCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	87	98	+	14.3636	5.63e-06	0.0548	TCCCCCCGGGCC
Rxra	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	51	-	10.6098	5.63e-06	0.163	GGGGTCAAGGGGCG
Rxra	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	64	77	+	10.6098	5.63e-06	0.163	GGGGTCAAGGGGCG
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	15	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	18	+	14.5658	5.63e-06	0.0131	GACCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	18	+	14.5658	5.63e-06	0.0131	GACCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	29	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	7	18	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	29	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	29	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	10	21	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	10	21	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	13	24	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	13	24	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	30	41	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	31	42	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	23	34	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	25	36	-	14.5658	5.63e-06	0.0131	GACCCGCCCCCA
SP8	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	28	39	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	41	52	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	49	60	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	51	62	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	51	62	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	66	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	66	+	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	49	60	-	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	61	72	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	51	62	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	53	64	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	53	64	-	14.5658	5.63e-06	0.0131	GCCCCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	54	65	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	54	65	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	54	65	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	54	65	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	63	74	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	87	+	14.5658	5.63e-06	0.0131	GCCACACCCACA
SP8	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	76	87	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	90	+	14.5658	5.63e-06	0.0131	GACCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	70	81	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	70	81	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	73	84	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	73	84	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	74	85	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	77	88	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	77	88	-	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	94	105	+	14.5658	5.63e-06	0.0131	GCCCCGCCCCTC
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	21	35	+	14.3857	5.63e-06	0.0744	CGGGGGCGGAGGTTG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	79	93	-	14.3857	5.63e-06	0.0744	CGGGGGCGGAGGTTG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	30	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	30	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	30	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	30	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	31	41	+	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	37	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	37	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	37	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	37	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	60	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	60	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	78	88	+	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	84	-	14.8	5.64e-06	0.0246	CCACTTCCGCT
ELK4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	85	95	+	14.8	5.64e-06	0.0246	CCACTTCCGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	+	14.4231	5.64e-06	0.0526	TGCCCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	+	14.4231	5.64e-06	0.0526	TGCCCCAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	-	14.4231	5.64e-06	0.0526	TGCCCCAGGCG
RXRG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	31	-	10.3404	5.65e-06	0.185	GAGATCAAAGTTCG
RXRG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	31	-	10.3404	5.65e-06	0.185	GAGATCAAAGTTCG
SP4	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	42	58	+	11.8545	5.65e-06	0.00776	TCGGCCCCGCCCCATGG
SP4	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	33	49	-	11.8545	5.65e-06	0.00776	CACACCACTCCCACTTC
SP4	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	57	73	-	11.8545	5.65e-06	0.00776	TCGGCCCCGCCCCATGG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	28	41	-	14.5571	5.65e-06	0.0727	TCATGACGTCACGT
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	28	41	-	14.5571	5.65e-06	0.0727	TCATGACGTCACGT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	28	41	-	14.5571	5.65e-06	0.0727	TCATGACGTCACGT
JUN(var.2)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	12	25	+	15	5.65e-06	0.118	AGACGGTGACTCAG
JUN(var.2)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	68	81	+	15	5.65e-06	0.118	AGACGGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	34	47	-	15	5.65e-06	0.118	AGACGGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	34	47	-	15	5.65e-06	0.118	AGACGGTGACTCAG
JUN(var.2)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	90	103	-	15	5.65e-06	0.118	AGACGGTGACTCAG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	+	15.3455	5.65e-06	0.0767	TGTGACTCATC
FOSL1	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	-	15.3455	5.65e-06	0.0767	TGTGACTCATC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	+	15.3455	5.65e-06	0.0767	TGTGACTCATC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	-	15.3455	5.65e-06	0.0767	TGTGACTCATC
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	37	53	+	9.21212	5.65e-06	0.264	AGGGGCGGGGCGACCTT
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	37	53	+	9.21212	5.65e-06	0.264	AGGGGCGGGGCGACCTT
ESR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	37	53	+	9.21212	5.65e-06	0.264	AGGGGCGGGGCGACCTT
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	37	53	+	9.21212	5.65e-06	0.264	AGGGGCGGGGCGACCTT
NRF1	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	31	41	+	15.0909	5.66e-06	0.00444	GAGCGTGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	46	56	+	15.0909	5.66e-06	0.00444	GAGCGTGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	74	84	-	15.0909	5.66e-06	0.00444	GAGCGTGCGCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	8	22	+	13.3448	5.66e-06	0.0251	CCTCGCCCCCGCAGA
YY2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	103	113	-	14.5606	5.66e-06	0.269	GGCCGCCATTG
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	103	113	-	14.5606	5.66e-06	0.269	GGCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	103	113	-	14.5606	5.66e-06	0.269	GGCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	103	113	-	14.5606	5.66e-06	0.269	GGCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	103	113	-	14.5606	5.66e-06	0.269	GGCCGCCATTG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	45	62	+	-3.44737	5.66e-06	0.0185	GGAGGGGAGGAATGCGGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	30	47	-	-3.44737	5.66e-06	0.0185	GGAGGGGAGGAATGCGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	68	85	+	-3.44737	5.66e-06	0.0185	GGAGGGGAGGAATGCGGC
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	53	70	-	-3.44737	5.66e-06	0.0185	GGAGGGGAGGAATGCGGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	+	15.0345	5.66e-06	0.0466	CCCCCTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	-	15.0345	5.66e-06	0.0466	CCCCCTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	-	15.0345	5.66e-06	0.0466	CCCCCTGGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	-	15.0345	5.66e-06	0.0466	CCCCCTGGGGGCG
SP2	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	18	32	-	14.7586	5.66e-06	0.00291	TCCCCGCCCCTTTAG
SP2	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	47	+	14.7586	5.66e-06	0.00291	GCCCCACCTCCGGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	47	+	14.7586	5.66e-06	0.00291	TCCCCGCCCCCAGAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	47	+	14.7586	5.66e-06	0.00291	TCCCCGCCCCCAGAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	47	+	14.7586	5.66e-06	0.00291	TCCCCGCCCCCAGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	47	+	14.7586	5.66e-06	0.00291	TCCCCGCCCCCAGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	47	+	14.7586	5.66e-06	0.00291	TCCCCGCCCCCAGAG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	61	75	+	14.7586	5.66e-06	0.00291	TCTCCGCCCACCCCC
SP2	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	68	82	-	14.7586	5.66e-06	0.00291	GCCCCACCTCCGGTC
ZNF263	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	12	32	+	14.0816	5.67e-06	0.00456	TGAGGAGGCGGGGCCTGGGAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	41	+	14.0816	5.67e-06	0.00456	GGGGGCGGGGGGGGTGGGGTC
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	24	44	+	14.0816	5.67e-06	0.00456	GGGGGCGAGGGGAGGAGGAAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	26	46	-	14.0816	5.67e-06	0.00456	GGGGGAGAGAAAGAAAGTGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	71	91	-	14.0816	5.67e-06	0.00456	GGGGGCGAGGGGAGGAGGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	74	94	-	14.0816	5.67e-06	0.00456	GGGGGCGGGGGGGGTGGGGTC
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	83	103	-	14.0816	5.67e-06	0.00456	AGAGAAGGGCGGGGAAGATAA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	83	103	-	14.0816	5.67e-06	0.00456	TGAGGAGGCGGGGCCTGGGAG
USF2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	51	+	15.0204	5.67e-06	0.045	GTCAGGTGACC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	37	+	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	37	+	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	59	69	-	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	59	69	-	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	99	+	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	99	+	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
Myog	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	107	+	14.8163	5.67e-06	0.0616	AGCAGCTGGGG
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	84	98	-	14.6364	5.67e-06	0.22	CCAAAGTGAAAGTTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	45	+	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	45	+	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	60	+	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	66	+	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	47	57	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	49	59	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	55	65	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	55	65	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	55	65	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	55	65	-	14.9038	5.67e-06	0.00363	GCCCCTCCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	17	26	-	14.9388	5.67e-06	0.00473	GCCACACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	29	38	+	14.9388	5.67e-06	0.00473	GCCACACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	43	52	-	14.9388	5.67e-06	0.00473	GCCACACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	79	88	+	14.9388	5.67e-06	0.00473	GCCACACCCC
SCRT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	86	100	+	14.1967	5.67e-06	0.494	AAGCCACAGGTGAGT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	9	22	-	14.7115	5.68e-06	0.00538	GGCCCACCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	9	22	-	14.7115	5.68e-06	0.00538	GGCCCACCCCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	9	22	-	14.7115	5.68e-06	0.00538	GGCCCACCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	9	22	-	14.7115	5.68e-06	0.00538	GGCCCACCCCCTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	16	29	-	14.7115	5.68e-06	0.00538	TCCTCTCCCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	50	63	+	14.7115	5.68e-06	0.00538	CACCCGCCCACTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	73	+	14.7115	5.68e-06	0.00538	ACCCCGCCCCCATC
PAX1	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	75	91	+	12.9091	5.68e-06	0.48	GGTTCCGCTTCGCTGGC
PAX1	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	24	40	-	12.9091	5.68e-06	0.48	GGTTCCGCTTCGCTGGC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	43	58	-	14.4364	5.68e-06	0.0292	CCCCGCCCACCCTAAG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	43	58	-	14.4364	5.68e-06	0.0292	CCCCGCCCACCCTAAG
Pou2f3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	30	45	+	14.9878	5.68e-06	0.428	TCAAATGCAAATGAGC
Rarb	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	86	101	+	5.82759	5.68e-06	0.742	GGAGGTCAGAAGTCCA
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	14	23	-	12.7419	5.68e-06	0.651	CACATTCCTT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	17	33	-	11.8364	5.69e-06	0.00776	CCGACCCCGCCCATTGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	17	33	-	11.8364	5.69e-06	0.00776	CCGACCCCGCCCATTGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	17	33	-	11.8364	5.69e-06	0.00776	CCGACCCCGCCCATTGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	17	33	-	11.8364	5.69e-06	0.00776	CCGACCCCGCCCATTGG
NFYB	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	19	33	+	15.0385	5.69e-06	0.0618	GGAGCGGCCAATCGG
NFYB	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	40	54	-	15.0385	5.69e-06	0.0618	GAGTCCGCCAATGAG
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	37	-	14.2245	5.69e-06	0.207	CGCACCTGTC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	37	-	14.2245	5.69e-06	0.207	CGCACCTGTC
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	37	-	14.2245	5.69e-06	0.207	CGCACCTGTC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	37	-	14.2245	5.69e-06	0.207	CGCACCTGTC
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	37	-	14.2245	5.69e-06	0.207	CGCACCTGTC
TCF4	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	95	104	+	14.2245	5.69e-06	0.207	CGCACCTGTC
Hmx3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	4	20	+	14.5122	5.69e-06	1	AGGAGCAATTAAGCCAA
Hmx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	4	20	+	14.5122	5.69e-06	1	AGGAGCAATTAAGCCAA
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	42	52	-	14.8793	5.7e-06	0.00773	GCCACACCCCT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	77	87	-	15.3636	5.7e-06	0.0821	GAATGACTCAT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	12	21	+	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	12	21	+	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	26	35	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	26	35	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	26	35	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	37	46	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	38	47	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	38	47	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	49	58	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	49	58	-	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	85	+	14.459	5.7e-06	0.102	CGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	85	+	14.459	5.7e-06	0.102	CGTCACGTGA
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	40	50	+	14.6842	5.7e-06	1	GCTATAAATCA
Hoxa9	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	40	50	+	14.6842	5.7e-06	1	GCTATAAATCA
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	40	50	+	14.6842	5.7e-06	1	GCTATAAATCA
Hoxa9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	40	50	+	14.6842	5.7e-06	1	GCTATAAATCA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	43	56	+	14.4138	5.71e-06	0.0137	TGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	43	56	+	14.4138	5.71e-06	0.0137	TGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	43	56	+	14.4138	5.71e-06	0.0137	TGCCCCGCCCCCGC
KLF14	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	59	72	-	14.4138	5.71e-06	0.0137	TGCCCCGCCCCCGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	27	37	+	14.9344	5.71e-06	0.0208	CCGGAAGTCAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	78	88	-	14.9344	5.71e-06	0.0208	CCGGAAGTCAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	78	88	-	14.9344	5.71e-06	0.0208	CCGGAAGTCAC
ETV4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	14.0862	5.71e-06	0.0647	GCCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	14.0862	5.71e-06	0.0647	GCCGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	14.0862	5.71e-06	0.0647	GCCGGAAGTA
ETV4	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	14.0862	5.71e-06	0.0647	GCCGGAAGTA
ETV4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	14.0862	5.71e-06	0.0647	GCCGGAAGTA
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	70	83	+	9.81818	5.71e-06	0.0928	GGATGACGTCAGAT
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	70	83	+	9.81818	5.71e-06	0.0928	GGATGACGTCAGAT
BATF3	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	92	105	-	9.81818	5.71e-06	0.0928	TGCTGACGTCAGGG
Klf1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	33	43	+	14.9848	5.71e-06	0.0344	GACCACGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	52	62	+	14.9848	5.71e-06	0.0344	GACCACGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	72	82	-	14.9848	5.71e-06	0.0344	GACCACGCCCT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	14.4909	5.71e-06	0.0969	GGCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	14.4909	5.71e-06	0.0969	GGCACGTGGC
IRF9	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	6	20	+	7.32727	5.71e-06	0.248	AATGAAAACGAAAGA
IRF9	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	24	38	-	7.32727	5.71e-06	0.248	AATGAAAACGAAAGA
IRF9	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	77	91	+	7.32727	5.71e-06	0.248	AATGAAAACGAAAGA
IRF9	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	95	109	-	7.32727	5.71e-06	0.248	AATGAAAACGAAAGA
PAX9	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	75	91	+	10.0909	5.71e-06	0.456	GGTTCCGCTTCGCTGGC
PAX9	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	24	40	-	10.0909	5.71e-06	0.456	GGTTCCGCTTCGCTGGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	+	15.0172	5.71e-06	0.0466	CGCCCTAAGGGCG
EHF	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	60	71	+	14.7705	5.72e-06	0.0691	CATCCGGAAGTG
MNT	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	13.803	5.72e-06	0.247	CCCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	13.803	5.72e-06	0.247	CCCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	13.803	5.72e-06	0.247	CCCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	13.803	5.72e-06	0.247	CCCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	13.803	5.72e-06	0.247	CCCACGTGCC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	70	80	-	15.069	5.72e-06	0.0231	TGGCGGGAAAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	34	50	-	11.8182	5.72e-06	0.00778	GTCGCCCCGCCCCTGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	34	50	-	11.8182	5.72e-06	0.00778	GTCGCCCCGCCCCTGGC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	34	49	+	2.44231	5.73e-06	0.29	CCAGCCCCCGCGATGA
JUN	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	30	42	-	15.1224	5.73e-06	0.297	ATGGTGACGTCAT
TFE3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	13.4286	5.73e-06	0.046	GGCACGTGAC
TFE3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	13.4286	5.73e-06	0.046	GGCACGTGAC
SP2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	48	+	14.7414	5.73e-06	0.00294	CGCCCGCCCCTTGAC
SP2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	67	81	-	14.7414	5.73e-06	0.00294	CGCCCGCCCCTTGAC
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	76	90	-	14.2162	5.73e-06	0.124	GAAGGGAAGAGGGCA
Klf4	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	29	38	-	15.6735	5.73e-06	0.00561	GGGGTGTGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	79	88	-	15.6735	5.73e-06	0.00561	GGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	17	26	+	15.6735	5.73e-06	0.00561	GGGGTGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	43	52	+	15.6735	5.73e-06	0.00561	GGGGTGTGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	3	23	+	14.0612	5.74e-06	0.00459	GAGGAGGGGGGAGGAGGAGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	14	34	+	14.0612	5.74e-06	0.00459	GAAAGAGCAGAGGGAGGGGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	34	54	-	14.0612	5.74e-06	0.00459	GGAGGGGGCGCAGAAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	91	111	+	14.0612	5.74e-06	0.00459	GGAGGGCGGGAAGAAGGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	75	95	-	14.0612	5.74e-06	0.00459	GAGGAAGGGGAGCAAGGGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	81	101	-	14.0612	5.74e-06	0.00459	GAAAGAGCAGAGGGAGGGGCA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	46	60	+	13.3103	5.74e-06	0.0251	GCTCGCCCACGCAGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	46	60	+	13.3103	5.74e-06	0.0251	GCTCGCCCACGCAGC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.7091	5.74e-06	0.0754	ACCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.7091	5.74e-06	0.0754	ACCGGAAGTT
Zfx	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	7	20	-	14.9394	5.74e-06	0.0154	CGTGCTGCGGCCTG
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	37	50	-	12.5816	5.75e-06	0.0605	GGGGCCGCCGGGGG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	63	76	+	13.8182	5.75e-06	0.176	GGGGTCGAAGGGCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	63	76	+	13.8182	5.75e-06	0.176	GGGGTCGAAGGGCA
EGR4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	52	67	+	14.4182	5.75e-06	0.0292	TCGCGCCCACGCCCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	48	63	-	14.4182	5.75e-06	0.0292	TCGCGCCCACGCCCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	48	63	-	14.4182	5.75e-06	0.0292	TCGCGCCCACGCCCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	39	58	+	11.1376	5.75e-06	0.0351	CAGCACAACACCCACAGCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	39	58	+	11.1376	5.75e-06	0.0351	CAGCACAACACCCACAGCCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	66	85	-	11.1376	5.75e-06	0.0351	CAGCACAACACCCACAGCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	66	85	-	11.1376	5.75e-06	0.0351	CAGCACAACACCCACAGCCG
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	+	14.8727	5.75e-06	0.0599	AGCCGCAGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	+	14.4038	5.75e-06	0.0526	TGCCCGAGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	-	14.4038	5.75e-06	0.0526	TGCCCGAGGCG
YY1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	3	14	+	14.8269	5.75e-06	0.0462	GAAGATGGCGCC
YY1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	44	55	-	14.8269	5.75e-06	0.0462	CAACATGGCCAC
YY1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	60	71	+	14.8269	5.75e-06	0.0462	CAACATGGCCAC
YY1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	101	112	-	14.8269	5.75e-06	0.0462	GAAGATGGCGCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	34	+	14.6923	5.76e-06	0.0054	GCCCCGCCTCCTGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	22	35	-	14.6923	5.76e-06	0.0054	GCCCCGCCCTCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	62	+	14.6923	5.76e-06	0.0054	GCCCCGCCTCCTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	75	88	+	14.6923	5.76e-06	0.0054	CCCCCACCGCCTCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	75	88	+	14.6923	5.76e-06	0.0054	CCCCCACCGCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	93	+	14.6923	5.76e-06	0.0054	GCCCCGCCCTCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	93	+	14.6923	5.76e-06	0.0054	GCCCCGCCCTCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	93	+	14.6923	5.76e-06	0.0054	GCCCCGCCCTCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	98	+	14.6923	5.76e-06	0.0054	GCCCCGCCTCCTGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	81	94	-	14.6923	5.76e-06	0.0054	GCCCCGCCTCCTGC
RFX5	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	20	35	-	12.7241	5.76e-06	0.0582	GGTCTCCGTGGCAACG
SP3	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	42	52	-	14.3008	5.76e-06	0.00833	GCCACACCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	14	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	8	18	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	38	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	38	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	38	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	31	41	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	31	41	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	31	41	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	31	41	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	37	47	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	46	56	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	58	68	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	69	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	78	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	77	87	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	107	+	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	101	111	-	14.8846	5.77e-06	0.00364	TCCCCGCCCCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	+	14.4727	5.77e-06	0.0397	TGCCCGAGGCA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	-	14.4727	5.77e-06	0.0397	TGCCCGAGGCA
NFYB	WILDTYPE__Antisense.noflip.NA__chr5:59783925..59784039,+__701.1.0.0	17	31	+	15.0192	5.77e-06	0.0618	GAGCCAGCCAATCAC
Sox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	99	113	+	-1.18571	5.77e-06	1	AACGATCCCAGTGTC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	51	65	+	13.2931	5.77e-06	0.0251	CCCCGCCGCCGCACC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	51	65	+	13.2931	5.77e-06	0.0251	CCCCGCCGCCGCACC
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	33	48	+	2.40385	5.77e-06	0.29	GGACCGCCCACGTCCC
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	9	23	-	14.2072	5.77e-06	0.124	GAGGGGCAGGGGTGA
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	41	55	+	14.2072	5.77e-06	0.124	GAGGGGCAGGGGTGA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	60	74	-	14.2072	5.77e-06	0.124	GAGGGGCAGGGGTGA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	92	106	+	14.2072	5.77e-06	0.124	GAGGGGCAGGGGTGA
ETS1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.7241	5.77e-06	0.0591	ACCGGATGTG
INSM1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	73	84	-	14.9898	5.78e-06	0.108	GGTCTGGGGGTG
EGR2	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	38	48	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	54	64	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	63	73	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	66	76	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	66	76	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	68	78	+	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	27	37	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	27	37	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	37	47	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	42	52	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	42	52	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	42	52	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	42	52	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	42	52	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	44	54	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	44	54	-	14.3276	5.79e-06	0.0586	CCGCCCCCGCG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	93	107	-	14.1803	5.79e-06	0.176	ATGAGTAAGCAACTC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	93	107	-	14.1803	5.79e-06	0.176	ATGAGTAAGCAACTC
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	8	22	+	14.1803	5.79e-06	0.176	ATGAGTAAGCAACTC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	+	15.1702	5.79e-06	0.149	AGTGACTCATC
IRF1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	22	42	-	14.2581	5.79e-06	0.0913	AACTCGTTTCACTTCCTCCTT
IRF1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	73	93	+	14.2581	5.79e-06	0.0913	AACTCGTTTCACTTCCTCCTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	76	96	-	14.2581	5.79e-06	0.0913	AAATACTTTTGCTTTCTGTAT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	8	22	+	14.7241	5.8e-06	0.00296	ATCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	8	22	+	14.7241	5.8e-06	0.00296	ATCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	8	22	+	14.7241	5.8e-06	0.00296	ATCCCGCCCCGCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	8	22	+	14.7241	5.8e-06	0.00296	ATCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	25	39	+	14.7241	5.8e-06	0.00296	GCTCCACCTCCCCCG
SP2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	11	25	-	14.7241	5.8e-06	0.00296	GCCCCACCCCGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	25	39	+	14.7241	5.8e-06	0.00296	GCTCCACCTCCCCCG
SP2	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	44	58	+	14.7241	5.8e-06	0.00296	GGCCCGCCCAATCCC
SP2	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	57	71	-	14.7241	5.8e-06	0.00296	GGCCCGCCCAATCCC
SP2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	104	+	14.7241	5.8e-06	0.00296	GCCCCACCCCGCCCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	13	29	+	11.7818	5.8e-06	0.00778	TTTACCCCGCCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	13	29	+	11.7818	5.8e-06	0.00778	TTTACCCCGCCCCTGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	28	44	-	11.7818	5.8e-06	0.00778	ATGGCCCCGCCTCCGCA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	28	44	-	11.7818	5.8e-06	0.00778	ATGGCCCCGCCTCCGCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	28	44	-	11.7818	5.8e-06	0.00778	ATGGCCCCGCCTCCGCA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	28	44	-	11.7818	5.8e-06	0.00778	ATGGCCCCGCCTCCGCA
SP4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	71	87	+	11.7818	5.8e-06	0.00778	ATGGCCCCGCCTCCGCA
RUNX1	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	21	31	-	13.8793	5.8e-06	0.215	CTCTGTGGTCT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	47	+	13.7714	5.8e-06	0.0867	CCCCCCCCCCCGCGC
RFX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	+	12.7069	5.8e-06	0.0582	TGTTGTCATAGCAATG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	4	24	+	14.0408	5.81e-06	0.00462	CGGGAAGGAGGAAGGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	4	24	+	14.0408	5.81e-06	0.00462	CGGGAAGGAGGAAGGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	4	24	+	14.0408	5.81e-06	0.00462	CGGGAAGGAGGAAGGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	18	38	-	14.0408	5.81e-06	0.00462	GAGGGCGGGGGAGCTGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	18	38	-	14.0408	5.81e-06	0.00462	GAGGGCGGGGGAGCTGGGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	77	97	+	14.0408	5.81e-06	0.00462	GAGGGCGGGGGAGCTGGGAAG
Gata4	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	3	13	-	14.8966	5.81e-06	0.58	CCTTATCTCAC
Gata4	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	15	25	-	14.8966	5.81e-06	0.58	CCTTATCTCAC
Gata4	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	33	43	-	14.8966	5.81e-06	0.58	CCTTATCTCAC
Gata4	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	72	82	+	14.8966	5.81e-06	0.58	CCTTATCTCAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	38	55	-	-3.55263	5.81e-06	0.0187	GATAGGGAGGGAGGAGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	38	55	-	-3.55263	5.81e-06	0.0187	GATAGGGAGGGAGGAGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	38	55	-	-3.55263	5.81e-06	0.0187	GATAGGGAGGGAGGAGTG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	38	55	-	-3.55263	5.81e-06	0.0187	GATAGGGAGGGAGGAGTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	20	34	-	13.2759	5.82e-06	0.0251	TCCCGCCCCCGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	20	34	-	13.2759	5.82e-06	0.0251	TCCCGCCCCCGCCGG
EHF	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	25	36	+	14.7541	5.82e-06	0.0691	AGCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	90	-	14.7541	5.82e-06	0.0691	AGCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	90	-	14.7541	5.82e-06	0.0691	AGCCCGGAAGTG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	18	31	-	14.6731	5.82e-06	0.00544	GAGCCGCCCCCTCT
EGR1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	56	69	+	14.6731	5.82e-06	0.00544	AACCCGCCCCCACA
EGR1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	46	59	-	14.6731	5.82e-06	0.00544	AACCCGCCCCCACA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	25	40	-	14.4	5.82e-06	0.0292	CCCCGCCCCCGCCGCT
EGR4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	35	50	-	14.4	5.82e-06	0.0292	CCCCGCCCCCGGATAT
EGR4	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	75	90	+	14.4	5.82e-06	0.0292	CCCCGCCCCCGCCGCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	68	83	-	14.4	5.82e-06	0.0292	CCCCGCCCCCGCCGCT
Gabpa	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	21	31	+	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	45	55	+	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	45	55	+	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	94	104	+	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	11	21	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	31	41	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	31	41	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	31	41	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	31	41	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	52	62	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
Gabpa	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	84	94	-	14.8852	5.82e-06	0.0208	CCGGAAGCCGC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	40	49	-	13.1313	5.83e-06	0.0811	GGAGGGGTAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	40	49	-	13.1313	5.83e-06	0.0811	GGAGGGGTAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	66	75	+	13.1313	5.83e-06	0.0811	GGAGGGGTAA
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	37	48	+	14.3061	5.83e-06	0.0681	CGTGACGTCACG
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	37	48	-	14.3061	5.83e-06	0.0681	CGTGACGTCACG
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	78	+	14.3061	5.83e-06	0.0681	CGTGACGTCACG
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	78	-	14.3061	5.83e-06	0.0681	CGTGACGTCACG
E2F4	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	5	15	-	15.1724	5.83e-06	0.023	AGGCGGGAAAG
E2F4	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	29	39	+	15.1724	5.83e-06	0.023	AGGCGGGAAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	79	89	-	15.1724	5.83e-06	0.023	CGGCGGGAACG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	79	89	-	15.1724	5.83e-06	0.023	CGGCGGGAACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	79	89	-	15.1724	5.83e-06	0.023	CGGCGGGAACG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	79	89	-	15.1724	5.83e-06	0.023	CGGCGGGAACG
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	100	110	+	15.1724	5.83e-06	0.023	AGGCGGGAAAG
Creb5	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	97	-	14.9818	5.83e-06	0.0992	CCTGACGTCACC
Creb5	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	29	+	14.9818	5.83e-06	0.0992	CCTGACGTCACC
ELF4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	9	20	+	14.5246	5.83e-06	0.0509	TTACCGGAAGTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	50	66	-	11.7636	5.84e-06	0.0078	CCGGCTCCGCCCCCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	50	66	-	11.7636	5.84e-06	0.0078	CCGGCTCCGCCCCCAGC
SP8	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	23	34	-	14.5	5.84e-06	0.0134	GCCCCTCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	33	44	-	14.5	5.84e-06	0.0134	GCCCCGCCCATC
SP8	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	53	64	-	14.5	5.84e-06	0.0134	GCCCCGCCCATC
SP8	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	82	+	14.5	5.84e-06	0.0134	GCCCCGCCCATC
SP8	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	92	+	14.5	5.84e-06	0.0134	GCCCCTCCCACC
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	66	81	+	5.72414	5.84e-06	0.742	AGAGGGCAAAGGGTCT
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	66	81	+	5.72414	5.84e-06	0.742	AGAGGGCAAAGGGTCT
MSC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	+	15.3659	5.85e-06	0.569	AACAGCTGTC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	51	61	+	14.9697	5.85e-06	0.0344	GCCCACACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	12	22	-	14.9697	5.85e-06	0.0344	GCCCACACCCT
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	-	15.2909	5.86e-06	0.0767	GATGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	-	15.2909	5.86e-06	0.0767	GATGACTCAGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	5	19	-	14.7069	5.86e-06	0.00298	ACCCCACCCCCACCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	57	+	14.7069	5.86e-06	0.00298	ACCCCACCCCCACCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	57	+	14.7069	5.86e-06	0.00298	ACCCCACCCCCACCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	70	84	+	14.7069	5.86e-06	0.00298	CTCCCGCCCCAACCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	70	84	+	14.7069	5.86e-06	0.00298	CTCCCGCCCCAACCC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	16	29	-	14.9091	5.87e-06	0.0156	GGGAGCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	16	29	-	14.9091	5.87e-06	0.0156	GGGAGCCAGGCCTC
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	83	100	-	12.0917	5.87e-06	0.31	GGAAAGCGACAGGAGAGC
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	83	100	-	12.0917	5.87e-06	0.31	GGAAAGCGACAGGAGAGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	27	40	+	14.3621	5.87e-06	0.0139	CGCCCCGCCCCCAC
KLF14	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	20	33	-	14.3621	5.87e-06	0.0139	CGCCCCGCCCCCAC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	63	76	+	14.3621	5.87e-06	0.0139	CGCCCCGCCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	1	10	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	14	23	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	7	16	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	7	16	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	28	37	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	28	37	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	33	42	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	34	43	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	34	43	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	44	53	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	50	59	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	58	67	+	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	56	65	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	62	71	-	14.6606	5.87e-06	0.0206	CCCCCCCCCT
RREB1	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	37	56	+	11.0826	5.87e-06	0.0352	CACCCAGCCAACCCCAGCAA
RREB1	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	59	78	-	11.0826	5.87e-06	0.0352	CACCCAGCCAACCCCAGCAA
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	47	63	-	11.7455	5.87e-06	0.00782	CCGGCCCCGCCCCTGGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	47	63	-	11.7455	5.87e-06	0.00782	CCGGCCCCGCCCCTGGG
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	25	-	15.2041	5.88e-06	0.105	AGATGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	25	-	15.2041	5.88e-06	0.105	AGATGACTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	77	87	-	15.2041	5.88e-06	0.105	GAATGACTCAT
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	46	59	-	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
IRF7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	46	59	-	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
IRF7	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	91	104	-	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
IRF7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	11	24	+	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	11	24	+	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
IRF7	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	56	69	+	14.2097	5.88e-06	0.341	AAGAAACCGAAACC
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	42	55	+	11.2182	5.88e-06	0.095	GAGAAGAGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	42	55	+	11.2182	5.88e-06	0.095	GAGAAGAGGAAGTG
SPI1	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	73	-	11.2182	5.88e-06	0.095	GAGAAGAGGAAGTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	3	23	+	14.0204	5.88e-06	0.00467	AAAGGAAGAGGAGAAGGAGCT
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	46	66	+	14.0204	5.88e-06	0.00467	GAGGGAAAGGGGCGGGGGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	49	69	-	14.0204	5.88e-06	0.00467	GAGGGAAAGGGGCGGGGGGAG
CENPB	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	98	112	-	14.5769	5.89e-06	0.793	CCCGCCTCCGCCGTA
HES7	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	17	+	11.5345	5.89e-06	0.171	GCGCACGTGCCG
HES7	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	40	+	11.5345	5.89e-06	0.171	GCGCACGTGCCG
HES7	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	75	86	-	11.5345	5.89e-06	0.171	GCGCACGTGCCG
HES7	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	98	109	-	11.5345	5.89e-06	0.171	GCGCACGTGCCG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	57	76	-	11.0734	5.89e-06	0.0352	CAACAACACACAACACATGC
SOX4	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	63	78	-	-0.545455	5.9e-06	1	GACCAAGGTCAGTGTT
Pou5f1::Sox2	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	75	89	+	14.379	5.9e-06	0.959	GTTTCATATGCAAAG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	36	50	+	14	5.91e-06	0.0277	GGCCACGCTCTCTCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	36	50	+	14	5.91e-06	0.0277	GGCCACGCTCTCTCA
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	36	50	+	14	5.91e-06	0.0277	GGCCACGCTCTCTCA
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	36	50	+	14	5.91e-06	0.0277	GGCCACGCTCTCTCA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	30	44	+	14.4394	5.91e-06	0.152	CCCCATGACAAAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	34	48	-	14.4394	5.91e-06	0.152	CCCCATGACAAAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	34	48	-	14.4394	5.91e-06	0.152	CCCCATGACAAAGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	34	48	-	14.4394	5.91e-06	0.152	CCCCATGACAAAGCA
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	46	59	+	14.3448	5.92e-06	0.0139	GACCACGCCCCGCT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	46	59	+	14.3448	5.92e-06	0.0139	GACCACGCCCCGCT
SPIC	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	28	41	+	14.4225	5.93e-06	0.0927	AAAATGAGGACGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	74	87	-	14.4225	5.93e-06	0.0927	AAAATGAGGACGAA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	74	87	-	14.4225	5.93e-06	0.0927	AAAATGAGGACGAA
NHLH1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	24	33	+	14.8103	5.93e-06	0.0736	CGCAGCTGAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	28	38	-	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	28	38	-	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	28	38	-	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	28	38	-	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	43	53	+	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	43	53	+	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	43	53	+	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	62	72	-	15.0727	5.93e-06	0.00458	GCGCATGCCCA
NRF1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	77	87	+	15.0727	5.93e-06	0.00458	GCGCATGCCCA
RFX4	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	+	14.4091	5.93e-06	0.0675	AGTTACCATGGCTCCC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	+	14.4091	5.93e-06	0.0675	GGTTCCCATAGAAACG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	+	14.4091	5.93e-06	0.0675	GGTTCCCATAGAAACG
Mecom	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	92	105	+	14.5281	5.94e-06	0.684	GAGACAGGATAACC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	15.2128	5.94e-06	0.0685	ACCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	15.2128	5.94e-06	0.0685	ACCGGAAGTT
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	70	83	+	9.65152	5.94e-06	0.0928	GGATGACGTCAGTT
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	70	83	+	9.65152	5.94e-06	0.0928	GGATGACGTCAGTT
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	70	83	+	9.65152	5.94e-06	0.0928	GGATGACGTCAGTT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	25	35	+	15.1552	5.94e-06	0.023	GCGCGGGAGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	25	35	+	15.1552	5.94e-06	0.023	GCGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	73	83	+	15.1552	5.94e-06	0.023	GCGCGGGAGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	73	83	+	15.1552	5.94e-06	0.023	GCGCGGGAGAG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	31	44	-	14.9615	5.95e-06	0.118	GGGCAGTGAGTCAT
SP2	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	8	22	-	14.6897	5.95e-06	0.00302	CTCCCGCCCTTCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	48	62	-	14.6897	5.95e-06	0.00302	GCCCCGCTCCCCACC
SP2	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	64	78	+	14.6897	5.95e-06	0.00302	TCCCTGCCCCCTCCC
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	37	+	14.6	5.95e-06	0.439	TGTTTACTCAAG
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	37	+	14.6	5.95e-06	0.439	TGTTTACTCAAG
Foxa2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	99	+	14.6	5.95e-06	0.439	TGTTTACTCAAG
Foxa2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	16	27	-	14.6	5.95e-06	0.439	TGTTTACTCAAG
Foxa2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	78	89	-	14.6	5.95e-06	0.439	TGTTTACTCAAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	17	33	-	11.7091	5.95e-06	0.00787	CCAGCCCCGCCCCAGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	17	33	-	11.7091	5.95e-06	0.00787	CCAGCCCCGCCCCAGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	17	33	-	11.7091	5.95e-06	0.00787	CCAGCCCCGCCCCAGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	17	33	-	11.7091	5.95e-06	0.00787	CCAGCCCCGCCCCAGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	19	33	-	13.9836	5.95e-06	0.0277	AGCCACACCCAACAT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	19	33	-	13.9836	5.95e-06	0.0277	AGCCACACCCAACAT
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	73	87	+	14.5606	5.96e-06	0.116	TCGGTTTCTTTTCTT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	8	28	+	14	5.96e-06	0.00472	AGAGACGGGGGGAGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	8	28	+	14	5.96e-06	0.00472	AGAGACGGGGGGAGAGAGAGG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	+	14.8182	5.96e-06	0.0599	CGCCGCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	+	14.8182	5.96e-06	0.0599	CGCCGCAGGCG
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	+	15	5.96e-06	0.0537	TCCCCTCCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	26	38	-	15	5.96e-06	0.0537	CGCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	26	38	-	15	5.96e-06	0.0537	CGCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	26	38	-	15	5.96e-06	0.0537	CGCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	26	38	-	15	5.96e-06	0.0537	CGCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	26	38	-	15	5.96e-06	0.0537	CGCCCTCGGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	40	-	15	5.96e-06	0.0537	CGCCCCCGGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	75	+	15	5.96e-06	0.0537	CGCCCCCGGGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	-	15	5.96e-06	0.0537	TCCCCTCCAGGCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	11	24	-	14.3276	5.97e-06	0.0139	AGACCCGCCCCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	11	24	-	14.3276	5.97e-06	0.0139	AGACCCGCCCCCCA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	11	24	-	14.3276	5.97e-06	0.0139	AGACCCGCCCCCCA
EGR1	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	47	+	14.6346	5.97e-06	0.00553	TCCCCGCCCCCAGT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	35	48	+	14.6346	5.97e-06	0.00553	CGGCCGCCCCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	35	48	+	14.6346	5.97e-06	0.00553	CGGCCGCCCCCGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	48	+	14.6346	5.97e-06	0.00553	CCCCCTCCCACTTC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	42	55	+	14.6346	5.97e-06	0.00553	GCTCCTCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	66	79	-	14.6346	5.97e-06	0.00553	TCCACACCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	66	79	-	14.6346	5.97e-06	0.00553	TCCACACCCCCACC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	52	63	+	14.2245	5.97e-06	0.0681	CCTGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	52	63	-	14.2245	5.97e-06	0.0681	CCTGACGTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	52	63	-	14.2245	5.97e-06	0.0681	CCTGACGTCACG
SRF	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	18	33	-	12.2131	5.97e-06	0.245	TGCCCAAATAAGGAGC
SRF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	44	59	+	12.2131	5.97e-06	0.245	AGGCCATATAAAGTCA
SRF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	44	59	+	12.2131	5.97e-06	0.245	AGGCCATATAAAGTCA
SRF	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	73	88	+	12.2131	5.97e-06	0.245	TGCCCAAATAAGGAGC
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	24	-	14.6364	5.97e-06	0.0563	AACCCGGAAACG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	60	71	+	14.6364	5.97e-06	0.0563	CATCCGGAAGTG
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	14	29	-	7.38776	5.97e-06	0.877	GAGGCCAAGAGGGCAG
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	12	20	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	13	21	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	30	38	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	38	46	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	38	46	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	38	46	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	38	46	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	60	68	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	61	69	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	66	74	-	14.4602	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	12	20	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	13	21	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	30	38	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	38	46	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	38	46	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	38	46	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	38	46	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	60	68	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	61	69	-	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	66	74	-	15.5714	5.98e-06	0.482	TATGCAAAT
CDX1	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	47	55	+	12.8113	5.98e-06	1	GCAATAAAA
POU5F1B	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	47	55	+	14.4602	5.98e-06	0.482	TATGCAAAT
POU5F1B	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	69	77	+	14.4602	5.98e-06	0.482	TATGCAAAT
POU3F4	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	47	55	+	15.5714	5.98e-06	0.482	TATGCAAAT
POU3F4	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	69	77	+	15.5714	5.98e-06	0.482	TATGCAAAT
MEOX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	11.2673	5.98e-06	1	AGTAATTAAG
Nr2e1	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	29	37	+	14.629	5.98e-06	1	AAAAGTCAA
RFX4	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	-	14.3939	5.98e-06	0.0675	GGTTTCCATGACAATG
RFX4	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	+	14.3939	5.98e-06	0.0675	GGTTTCCATGACAATG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	100	-	13.2069	5.98e-06	0.0251	CAGCGCCCACGCGCC
EGR3	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	15	29	+	13.2069	5.98e-06	0.0251	CAGCGCCCACGCGCC
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	98	114	-	14.25	5.98e-06	1	TAGAAGCTGTAAAGCAT
ZIC4	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	31	45	-	14.4727	5.98e-06	0.0974	GGCCACCCGCAGGTC
ZIC4	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	70	84	+	14.4727	5.98e-06	0.0974	GGCCACCCGCAGGTC
RFX3	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	+	14.0909	5.98e-06	0.0522	CATTGCCATGGCAATT
RFX3	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	-	14.0909	5.98e-06	0.0522	CATTGCCATGGCAATT
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	18	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	18	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	32	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	32	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	32	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	32	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	38	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	46	-	14.9592	5.98e-06	0.045	GTCACGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	46	-	14.9592	5.98e-06	0.045	GTCACGTGACA
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	86	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	92	-	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	33	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	33	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	33	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	33	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	39	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	87	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	87	+	14.9592	5.98e-06	0.045	GTCACGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	87	+	14.9592	5.98e-06	0.045	GTCACGTGACA
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	93	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
USF2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	107	+	14.9592	5.98e-06	0.045	GCCACGTGGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	9	25	+	11.6909	5.99e-06	0.0079	CTAACTCCGCCCCCAGG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	26	36	+	14.7959	5.99e-06	0.0632	GGCAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	26	36	+	14.7959	5.99e-06	0.0632	GGCAGCTGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	5	19	+	14.2857	5.99e-06	0.0744	TGGGGGCGGGGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	96	110	-	14.2857	5.99e-06	0.0744	TGGGGGCGGGGGGCA
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	15.25	5.99e-06	0.1	CTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	15.25	5.99e-06	0.1	CTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	15.25	5.99e-06	0.1	CTCACGTGAC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	15.25	5.99e-06	0.1	CTCACGTGAC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	15.25	5.99e-06	0.1	CTCACGTGAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	6	16	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	6	16	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	2	12	-	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	5	15	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	5	15	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	23	33	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	27	37	-	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	36	46	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	36	46	-	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	47	57	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	47	57	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	42	52	-	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	45	55	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	70	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	61	71	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	61	71	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	66	76	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	69	79	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	69	79	+	14.8654	5.99e-06	0.00372	CCCCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	69	79	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	63	73	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	82	92	+	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	82	92	-	14.8654	5.99e-06	0.00372	CTCCCTCCCCC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	26	39	-	13.8525	6e-06	0.176	CCCCCCCCGCCAAG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	+	14.4	6e-06	0.0397	CGCCGCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	+	14.4	6e-06	0.0397	CGCCGCAGGCG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	8	22	-	13.5921	6e-06	0.0875	GTGCTGAGTCAGCCC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	8	22	-	13.5921	6e-06	0.0875	GTGCTGAGTCAGCCC
IRF9	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	7	21	-	7.14545	6.01e-06	0.248	AGCCAAACTGAAAGC
IRF9	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	94	108	+	7.14545	6.01e-06	0.248	AGCCAAACTGAAAGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	+	10.7016	6.01e-06	0.0254	AGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	+	10.7016	6.01e-06	0.0254	AGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	-	10.7016	6.01e-06	0.0254	GGCGCGTGCT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	-	10.7016	6.01e-06	0.0254	GGCGCGTGCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	42	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	42	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	47	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	65	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	71	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	71	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	81	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	81	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	81	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	81	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	85	+	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	28	38	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	28	38	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	28	38	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	30	40	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	33	43	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	33	43	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	50	60	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	68	78	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	68	78	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	73	83	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	74	84	-	14.2602	6.01e-06	0.00833	GCCCCACCCAC
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	69	83	-	14.9615	6.02e-06	0.0618	ATGTAAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	69	83	-	14.9615	6.02e-06	0.0618	ATGTAAGCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	69	83	-	14.9615	6.02e-06	0.0618	ATGTAAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	69	83	-	14.9615	6.02e-06	0.0618	ATGTAAGCCAATCAG
Klf1	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	56	66	+	14.9545	6.02e-06	0.0344	AACCCCACCCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	25	39	-	14.6724	6.02e-06	0.00304	ACTCCGCCCCCTCCA
SP2	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	28	42	-	14.6724	6.02e-06	0.00304	CCCCCACCTCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	40	54	-	14.6724	6.02e-06	0.00304	TCCCCTCCCCCGCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	40	54	-	14.6724	6.02e-06	0.00304	TCCCCTCCCCCGCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	81	+	14.6724	6.02e-06	0.00304	TCCCCTCCCCCGCCA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	81	+	14.6724	6.02e-06	0.00304	TCCCCTCCCCCGCCA
Nr5a2	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	96	110	-	14.7241	6.03e-06	0.232	TTGCTCAAGGCCAGA
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	7	16	-	15.5102	6.03e-06	0.15	CGGGATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	7	16	-	15.5102	6.03e-06	0.15	CGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	7	16	-	15.5102	6.03e-06	0.15	CGGGATTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	7	16	-	15.5102	6.03e-06	0.15	CGGGATTTCC
RELA	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	19	28	-	15.5102	6.03e-06	0.15	CGGGATTTCC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
ELK1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	14.9149	6.03e-06	0.0372	GCCGGAAGTT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	+	14.8143	6.03e-06	0.14	AGCAGCTGTC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	+	14.8143	6.03e-06	0.14	AGCAGCTGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	+	14.8143	6.03e-06	0.14	AGCAGCTGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.3276	6.03e-06	0.0475	ACCGGAAGCA
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	15.6538	6.03e-06	0.0663	AGCACGTGAC
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	15.6538	6.03e-06	0.0663	AGCACGTGAC
E2F6	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	85	95	-	15.0345	6.03e-06	0.0231	TGGCGGGAAGA
E2F6	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	20	30	+	15.0345	6.03e-06	0.0231	TGGCGGGAAGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	72	82	+	14.8689	6.03e-06	0.0213	CCGGAAGTAGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	72	82	+	14.8689	6.03e-06	0.0213	CCGGAAGTAGA
Gabpa	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	33	43	-	14.8689	6.03e-06	0.0213	CCGGAAGTAGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	27	43	-	11.6727	6.03e-06	0.00794	GTGGCCCCGCCCCGGCC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	-	12.5429	6.03e-06	0.0729	GGATTCCATGGTAACC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	-	12.5429	6.03e-06	0.0729	GGATTCCATGGTAACC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	36	56	+	13.9796	6.03e-06	0.00476	GAGGAAGAGGAGGAGGGAGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	44	64	+	13.9796	6.03e-06	0.00476	GAGGAAGAGGAGGAGGGAGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	51	71	-	13.9796	6.03e-06	0.00476	GAGGAAGAGGAGGAGGGAGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	59	79	-	13.9796	6.03e-06	0.00476	GAGGAAGAGGAGGAGGGAGAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	81	98	+	-3.68421	6.04e-06	0.019	GAGAGAGAGGCAGGCTGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	17	30	-	14.6154	6.04e-06	0.00553	GGCCCGCCCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	17	30	-	14.6154	6.04e-06	0.00553	GGCCCGCCCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	21	34	-	14.6154	6.04e-06	0.00553	GGCCCGCCCCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	21	34	-	14.6154	6.04e-06	0.00553	GGCCCGCCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	21	34	-	14.6154	6.04e-06	0.00553	GGCCCGCCCCCTTC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	31	44	-	14.6154	6.04e-06	0.00553	GCACCGCCCCCAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	84	+	14.6154	6.04e-06	0.00553	GCACCGCCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	112	+	14.6154	6.04e-06	0.00553	CTCCCACCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	112	+	14.6154	6.04e-06	0.00553	CTCCCACCCCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	112	+	14.6154	6.04e-06	0.00553	CTCCCACCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	112	+	14.6154	6.04e-06	0.00553	CTCCCACCCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	112	+	14.6154	6.04e-06	0.00553	CTCCCACCCCCTTC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	-	12.6207	6.04e-06	0.0582	GGGCGCCATAGCAACG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	-	12.6207	6.04e-06	0.0582	GGGCGCCATAGCAACG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	-	12.6207	6.04e-06	0.0582	GGGCGCCATAGCAACG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	-	12.6207	6.04e-06	0.0582	GGGCGCCATAGCAACG
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	-	12.6207	6.04e-06	0.0582	GGGCGCCATAGCAACG
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	+	14.0758	6.04e-06	0.0522	TGTTACCAGGACAACC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	27	37	+	15	6.05e-06	0.00458	CCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	27	37	+	15	6.05e-06	0.00458	CCGCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	28	38	-	15	6.05e-06	0.00458	CCGCGTGCGCA
GBX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	12.5319	6.05e-06	1	GCCAATTAGG
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	44	54	+	15.0204	6.05e-06	0.106	CGGTGAGTCAG
ETV2	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	26	36	+	15.1639	6.05e-06	0.118	AACCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	89	-	15.1639	6.05e-06	0.118	AACCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	89	-	15.1639	6.05e-06	0.118	AACCGGAAGTC
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	21	31	+	15.0545	6.05e-06	0.181	ACCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	21	31	+	15.0545	6.05e-06	0.181	ACCCGGAAGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	21	31	+	15.0545	6.05e-06	0.181	ACCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	21	31	+	15.0545	6.05e-06	0.181	ACCCGGAAGTG
SPDEF	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	35	45	+	15.0545	6.05e-06	0.181	ACCCGGAAGTG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	54	68	+	14.2714	6.05e-06	0.0744	GGAGGTCGGAGTGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	+	14.3273	6.05e-06	0.0548	CGCCCGCGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	+	14.3273	6.05e-06	0.0548	CGCCCGCGGGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	-	14.3273	6.05e-06	0.0548	CGCCCGCGGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	+	14.3273	6.05e-06	0.0548	AGCCCGCAGGCA
JUN	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	23	35	-	15.0612	6.06e-06	0.297	GAAATGAGGTAAT
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	-	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	-	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	+	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	+	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	-	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	-	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
ATF7	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	+	14.4	6.06e-06	0.0727	TTGTGACGTCACGG
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	+	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	+	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	-	15.2364	6.06e-06	0.0767	AGTGAGTCAGC
HES5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	93	104	-	12.1379	6.07e-06	0.196	AGGCACGCGCCA
FOSL2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	17	27	+	15.2	6.07e-06	0.0861	CGATGACTCAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	13.6585	6.07e-06	0.129	GTCACGTGAG
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	13.6585	6.07e-06	0.129	GTCACGTGAG
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	13.6585	6.07e-06	0.129	GTCACGTGAG
TFEC	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	13.6585	6.07e-06	0.129	GTCACGTGAG
TFEC	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	13.6585	6.07e-06	0.129	GTCACGTGAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	60	73	+	14.9423	6.07e-06	0.118	GGACAGTGACTCAT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	15	26	+	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	15	26	+	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	35	46	+	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	35	46	+	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	44	-	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	44	-	14.102	6.07e-06	0.0681	CGTGACGTCACA
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	100	-	14.102	6.07e-06	0.0681	CGTGACGTCACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	97	107	+	14.7347	6.08e-06	0.0588	AGCATGTGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	97	107	+	14.7347	6.08e-06	0.0588	AGCATGTGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	97	107	+	14.7347	6.08e-06	0.0588	AGCATGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	97	107	+	14.7347	6.08e-06	0.0588	AGCATGTGACC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	40	57	+	-3.71053	6.08e-06	0.019	GGCGGGGAGGGAGGAGGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	33	50	-	-3.71053	6.08e-06	0.019	GGGAGAGAGGGAGGGAAG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	65	82	+	-3.71053	6.08e-06	0.019	GGGAGAGAGGGAGGGAAG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	58	75	-	-3.71053	6.08e-06	0.019	GGCGGGGAGGGAGGAGGC
SP1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	2	12	+	14.8462	6.09e-06	0.00376	GGCCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	69	79	+	14.8462	6.09e-06	0.00376	GGCCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	103	113	-	14.8462	6.09e-06	0.00376	GGCCCTCCCCC
Foxa2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	13	+	14.57	6.09e-06	0.439	TGTTTACCTAGC
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	13	+	14.57	6.09e-06	0.439	TGTTTACCTAGC
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	13	+	14.57	6.09e-06	0.439	TGTTTACCTAGC
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	13	+	14.57	6.09e-06	0.439	TGTTTACCTAGC
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	74	90	+	-3.94286	6.09e-06	0.94	AGCTTTCCATGAATCAC
SP2	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	24	38	+	14.6552	6.09e-06	0.00307	GTCCCGCTCCTCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	44	+	14.6552	6.09e-06	0.00307	CCCCCGCCCTCGCAG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	62	76	-	14.6552	6.09e-06	0.00307	CCCCCGCCCCCCATA
RFX5	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	-	12.6034	6.09e-06	0.0582	GGTTTCCATGACAATG
RFX5	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	+	12.6034	6.09e-06	0.0582	GGTTTCCATGACAATG
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	55	65	-	14.8621	6.09e-06	0.347	AAACCACAGCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	37	51	+	14.6515	6.1e-06	0.0365	GTCTCGCGCGCCTGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	37	51	+	14.6515	6.1e-06	0.0365	GTCTCGCGCGCCTGC
ESRRB	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	72	82	+	14.9483	6.1e-06	0.867	CCAAGGTCACA
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	12	32	+	14.1613	6.11e-06	0.0913	CTTGACTTTCCTTTTTTTTTC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	2	18	+	11.6364	6.11e-06	0.00796	AGAGCCACGCCCCGTCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	2	18	+	11.6364	6.11e-06	0.00796	AGAGCCACGCCCCGTCT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	2	18	+	11.6364	6.11e-06	0.00796	AGAGCCACGCCCCGTCT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	2	18	+	11.6364	6.11e-06	0.00796	AGAGCCACGCCCCGTCT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	2	18	+	11.6364	6.11e-06	0.00796	AGAGCCACGCCCCGTCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	54	68	-	13.1552	6.11e-06	0.0251	CTCCGCCGCCGCACC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	54	68	-	13.1552	6.11e-06	0.0251	CTCCGCCGCCGCACC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	54	68	-	13.1552	6.11e-06	0.0251	CTCCGCCGCCGCACC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	54	68	-	13.1552	6.11e-06	0.0251	CTCCGCCGCCGCACC
Nr2f6	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	48	-	13.697	6.11e-06	0.176	GGTGACAAAGGTCA
Nr2f6	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	67	80	+	13.697	6.11e-06	0.176	GGTGACAAAGGTCA
TP63	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	+	8.32759	6.11e-06	0.492	GACAAGCCCGGGCTTGTG
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	75	89	-	13.5526	6.11e-06	0.0875	GCCCTGAGTCAGCTT
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	19	39	+	13.9592	6.11e-06	0.0048	AAAGGAAGGGAGGGAAAGAAG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	9	29	-	13.9592	6.11e-06	0.0048	AAAGGAAGGGAGGGAAAGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	25	45	-	13.9592	6.11e-06	0.0048	GGGTGCGGAGTGGGCGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	86	106	+	13.9592	6.11e-06	0.0048	AAAGGAAGGGAGGGAAAGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	76	96	-	13.9592	6.11e-06	0.0048	AAAGGAAGGGAGGGAAAGAAG
Gata4	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	74	84	+	14.8276	6.11e-06	0.58	TCTTATCTGTG
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	63	73	-	14.9394	6.12e-06	1	TTACGTAACGC
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	78	88	-	15.0577	6.12e-06	0.172	AGAATGACTCA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	64	74	-	14.9388	6.12e-06	0.045	CCCACGTGACC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	64	74	-	14.9388	6.12e-06	0.045	CCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	64	74	-	14.9388	6.12e-06	0.045	CCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	64	74	-	14.9388	6.12e-06	0.045	CCCACGTGACC
USF2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	51	+	14.9388	6.12e-06	0.045	CCCACGTGACC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	40	52	-	10.6531	6.13e-06	0.233	AGGGGTTCCCCCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	25	39	-	14.1351	6.13e-06	0.124	CTGAGAGAAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	25	39	-	14.1351	6.13e-06	0.124	CTGAGAGAAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	25	39	-	14.1351	6.13e-06	0.124	CTGAGAGAAAGGGCA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	-	15.4255	6.13e-06	0.149	TATGAGTCATC
Creb5	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	87	-	14.8727	6.14e-06	0.0992	CGTGACGTCATC
Creb5	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	39	+	14.8727	6.14e-06	0.0992	CGTGACGTCATC
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	26	40	-	14.2429	6.14e-06	0.0744	GAGGGGCGGAGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	26	40	-	14.2429	6.14e-06	0.0744	GAGGGGCGGAGGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	75	89	+	14.2429	6.14e-06	0.0744	GAGGGGCGGAGGGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	24	40	-	11.6182	6.14e-06	0.00796	CCCGCCCCGCCCCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	24	40	-	11.6182	6.14e-06	0.00796	CCCGCCCCGCCCCCGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	24	40	-	11.6182	6.14e-06	0.00796	CCCGCCCCGCCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	24	40	-	11.6182	6.14e-06	0.00796	CCCGCCCCGCCCCCGGC
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	63	76	+	12.4082	6.14e-06	0.0605	GAGGGGCTCTGGGG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	42	55	-	11.0727	6.14e-06	0.0959	TCAAAGGGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	42	55	-	11.0727	6.14e-06	0.0959	TCAAAGGGGAAGTT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	20	34	+	13.5395	6.15e-06	0.0875	CTCATGACTCAGCCA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	55	69	-	13.5395	6.15e-06	0.0875	CTCATGACTCAGCCA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	28	41	+	14.3571	6.15e-06	0.0727	ACGTGACGTCATGA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	28	41	+	14.3571	6.15e-06	0.0727	ACGTGACGTCATGA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	28	41	+	14.3571	6.15e-06	0.0727	ACGTGACGTCATGA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	42	+	14.3571	6.15e-06	0.0727	GCGTGACGTCACTG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	42	+	14.3571	6.15e-06	0.0727	GCGTGACGTCACTG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	42	+	14.3571	6.15e-06	0.0727	GCGTGACGTCACTG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	42	+	14.3571	6.15e-06	0.0727	GCGTGACGTCACTG
Zfx	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	48	61	+	14.8485	6.15e-06	0.0161	GACGCCGGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	64	77	+	14.8485	6.15e-06	0.0161	CCAGCTCAGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	54	67	-	14.8485	6.15e-06	0.0161	GACGCCGGGGCCTT
ELK4	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	45	55	+	14.7273	6.15e-06	0.0263	GCATTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	50	60	-	14.7273	6.15e-06	0.0263	ACACTTCCGGT
ELK4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	71	-	14.7273	6.15e-06	0.0263	GCATTTCCGGC
ELK4	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	71	-	14.7273	6.15e-06	0.0263	GCATTTCCGGC
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	33	43	-	14.9184	6.15e-06	0.219	GTTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	59	69	-	14.9184	6.15e-06	0.219	GTTTCCAGGAA
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	67	78	+	14.6034	6.15e-06	0.262	GCGACCACCGTA
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	67	78	+	14.6034	6.15e-06	0.262	GCGACCACCGTA
MTF1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	71	84	-	12.4512	6.16e-06	0.5	TGTGCGCCCGGCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	66	77	+	14.4342	6.16e-06	0.0134	CACCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	66	77	+	14.4342	6.16e-06	0.0134	CACCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	66	77	+	14.4342	6.16e-06	0.0134	CACCCGCCCCCT
RREB1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	34	53	-	10.9541	6.16e-06	0.0365	CACCCACTCGCCCCACACCC
Nr5a2	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	3	17	-	14.6897	6.16e-06	0.232	TTGTCCAAGGCCACC
Nr5a2	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	98	112	+	14.6897	6.16e-06	0.232	TTGTCCAAGGCCACC
SP2	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	49	+	14.6379	6.17e-06	0.0031	GCCCCGCCCCGAAGC
SP2	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	66	80	-	14.6379	6.17e-06	0.0031	GCCCCGCCCCGAAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	82	96	-	14.6379	6.17e-06	0.0031	CGCCCGCCCCGTCGC
KLF16	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	1	11	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	12	22	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	12	22	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	13	23	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	13	23	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	33	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	33	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	33	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	33	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	33	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	39	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	39	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	53	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	53	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	63	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	70	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	78	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	79	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	85	+	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	102	112	+	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	3	13	-	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	9	19	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	30	40	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	37	47	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	37	47	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	37	47	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	37	47	-	14.7069	6.18e-06	0.00791	ACCCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	104	114	-	14.7069	6.18e-06	0.00791	GACCCGCCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	15	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	2	11	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	4	13	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	16	25	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	42	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	42	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	25	34	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	25	34	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	27	36	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	33	42	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	44	53	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	45	54	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	61	70	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	62	71	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	61	70	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	61	70	-	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	82	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	84	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	84	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	84	+	14.8367	6.18e-06	0.00502	TCCCCACCCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	+	14.2727	6.18e-06	0.0893	TCCCCCCGGGCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	15	32	+	-3.76316	6.18e-06	0.019	GGGCGGAGGGAAGGGAAG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	32	49	+	-3.76316	6.18e-06	0.019	GGGCGGAGGGAAGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	66	83	-	-3.76316	6.18e-06	0.019	GGGCGGAGGGAAGGGAAG
HNF4G	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	32	-	14.5385	6.18e-06	0.253	AGAGATCAAAGTTCG
HNF4G	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	32	-	14.5385	6.18e-06	0.253	AGAGATCAAAGTTCG
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	52	66	+	14.1261	6.18e-06	0.124	CCAGGGCAGGGTTCA
REL	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	29	38	+	14.0101	6.18e-06	0.16	GGGACTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	9	18	-	14.0101	6.18e-06	0.16	GGGACTTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	9	18	-	14.0101	6.18e-06	0.16	GGGACTTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	32	41	-	14.0101	6.18e-06	0.16	GGGACTTTCC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	44	58	+	14.5	6.18e-06	0.116	TAGGTTTCATTTTAC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	16	31	-	14.3091	6.18e-06	0.03	CTCCGCCCCCGCTCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	83	98	+	14.3091	6.18e-06	0.03	CTCCGCCCCCGCTCCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	28	-	14.0816	6.18e-06	0.0681	CATGACGTCAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	28	-	14.0816	6.18e-06	0.0681	CATGACGTCAGA
KLF14	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	53	66	+	14.2586	6.19e-06	0.0143	CGACCCGCCCACCT
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	32	52	+	13.9388	6.19e-06	0.00485	GGAGGGGCGAGAGGGTGGGGA
ETV3	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	14.3944	6.19e-06	0.0449	ACCGGAAGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	+	14.1429	6.19e-06	0.0857	CGCCCGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	+	14.1429	6.19e-06	0.0857	CGCCCGCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	3	14	-	14.1429	6.19e-06	0.0857	CGCCCGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	3	14	-	14.1429	6.19e-06	0.0857	CGCCCGCGGGCG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	32	46	-	14.5091	6.19e-06	0.22	TTAAAGTGAAAGCAA
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	43	57	-	14.5091	6.19e-06	0.22	CGAAAGGGAAAGGAG
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	44	58	-	14.5091	6.19e-06	0.22	TTAAAGTGAAAGCAA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	44	58	-	14.5091	6.19e-06	0.22	TTAAAGTGAAAGCAA
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	77	91	-	14.5091	6.19e-06	0.22	CGAAAGGGAAAGGAG
Myog	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	98	+	14.7347	6.19e-06	0.0645	AACAGCTGCTC
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	6	17	-	14.9286	6.19e-06	0.108	GGCTAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	6	17	-	14.9286	6.19e-06	0.108	GGCTAGGGGGCG
SP3	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	16	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	18	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	18	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	19	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	20	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	25	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	25	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	30	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	30	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	35	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	38	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	38	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	42	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	42	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	42	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	42	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	42	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	43	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	43	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	43	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	43	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	43	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	44	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	44	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	46	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	46	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	47	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	47	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	49	+	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	62	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	91	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	91	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	98	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	98	+	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	1	11	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	1	11	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	13	23	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	17	27	-	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	33	43	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	42	52	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	42	52	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	42	52	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	42	52	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	42	52	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	44	54	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	53	63	-	14.1301	6.2e-06	0.00833	CCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	71	81	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	73	83	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	99	109	-	14.1301	6.2e-06	0.00833	TCCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	9	19	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	10	20	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	25	35	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	18	28	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	26	36	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	39	49	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	39	49	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	39	49	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	45	55	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	39	49	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	39	49	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	39	49	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	39	49	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	49	59	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	50	60	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	55	65	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	66	76	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	60	70	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	66	76	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	79	89	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	87	97	+	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	80	90	-	14.7885	6.2e-06	0.00377	CCTCCTCCCCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	33	46	+	14.5769	6.2e-06	0.00565	GCTCCGCCTCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	33	46	+	14.5769	6.2e-06	0.00565	GCTCCGCCTCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	50	63	+	14.5769	6.2e-06	0.00565	GCTCCGCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	50	63	+	14.5769	6.2e-06	0.00565	GCTCCGCCTCCGGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	18	35	+	-3.77632	6.2e-06	0.019	GGGAGGAGGTAAGCAAAT
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	22	37	+	10.2759	6.2e-06	0.231	GTCCCAGCATGCAGCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	22	37	+	10.2759	6.2e-06	0.231	GTCCCAGCATGCAGCG
RFX4	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	-	14.3333	6.21e-06	0.0684	AATTGCCATGGCAATG
RFX4	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	+	14.3333	6.21e-06	0.0684	AATTGCCATGGCAATG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	22	32	-	14.2586	6.21e-06	0.0586	CCGCCCACGTG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	+	14.6909	6.21e-06	0.0599	CGCCGGAGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	+	14.6909	6.21e-06	0.0599	CGCCGGAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	+	14.9508	6.21e-06	0.0539	TGCCTTGGAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	+	14.9508	6.21e-06	0.0539	TGCCTTGGAGGCA
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	-	12.4714	6.21e-06	0.0729	GGTTGTCCTGGTAACA
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	5	16	+	15.3273	6.22e-06	0.731	AAACATATGCCA
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	49	60	-	15.3273	6.22e-06	0.731	AAACATATGCCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	-	14.8448	6.22e-06	0.049	GGCCTTCGGGGCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	6	22	-	11.5818	6.22e-06	0.00798	CCAGCCCCGCCCCGCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	6	22	-	11.5818	6.22e-06	0.00798	CCAGCCCCGCCCCGCCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	6	22	-	11.5818	6.22e-06	0.00798	CCAGCCCCGCCCCGCCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	6	22	-	11.5818	6.22e-06	0.00798	CCAGCCCCGCCCCGCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	32	48	+	11.5818	6.22e-06	0.00798	GGCGCCCCGCCCCCAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	32	48	+	11.5818	6.22e-06	0.00798	GGCGCCCCGCCCCCAGC
SCRT2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	60	72	-	13.7049	6.22e-06	0.673	AAGCAACAGCTGC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	18	31	+	14.8333	6.22e-06	0.0163	GAAGGCCAGGCCTG
SOX21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	7	21	+	9.61224	6.23e-06	1	GACAGTGACAGTGTT
SOX21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	7	21	+	9.61224	6.23e-06	1	GACAGTGACAGTGTT
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	40	+	14.0408	6.23e-06	0.0681	CGTGACGTCATG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	40	+	14.0408	6.23e-06	0.0681	CGTGACGTCATG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	40	+	14.0408	6.23e-06	0.0681	CGTGACGTCATG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	40	+	14.0408	6.23e-06	0.0681	CGTGACGTCATG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	40	+	14.0408	6.23e-06	0.0681	CGTGACGTCATG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	4	14	-	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	10	20	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	10	20	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	16	26	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	16	26	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr2:122407077..122407191,+__2494.1.0.0	20	30	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	23	33	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	23	33	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	30	40	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	30	40	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	45	55	+	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	49	59	+	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	52	62	+	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	43	53	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	43	53	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	57	67	+	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	48	58	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	53	63	-	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	58	68	-	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	58	68	-	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	60	70	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	60	70	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	63	73	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	63	73	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	63	73	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	63	73	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	64	74	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	64	74	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	71	81	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	71	81	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	71	81	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	71	81	-	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	82	92	+	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr2:122407077..122407191,-__1173.1.0.0	85	95	+	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	89	99	+	14.9636	6.23e-06	0.00458	GCGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	95	105	+	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	95	105	+	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	104	114	+	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	95	105	-	14.9636	6.23e-06	0.00458	GCGGCTGCGCC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	9	23	+	14.4848	6.23e-06	0.116	TTACTTTCGCTTTCA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	21	35	+	14.4848	6.23e-06	0.116	TTACTTTCGCTTTCA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	21	35	+	14.4848	6.23e-06	0.116	TTACTTTCGCTTTCA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	30	-	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	30	-	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	30	-	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	30	-	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	44	-	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	21	30	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	21	30	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	21	30	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	21	30	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	41	50	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	41	50	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	41	50	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	41	50	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	56	65	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	56	65	+	14.7959	6.24e-06	0.00598	TGGGCGGGGT
ELF3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	77	89	-	14.0517	6.24e-06	0.102	AACCCGGAAGAAC
ELF3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	26	38	+	14.0517	6.24e-06	0.102	AACCCGGAAGAAC
KLF14	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	32	45	-	14.2414	6.24e-06	0.0143	CGCCCCGCCCATCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	48	61	-	14.2414	6.24e-06	0.0143	GGCTCCGCCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	48	61	-	14.2414	6.24e-06	0.0143	GGCTCCGCCCACCC
KLF14	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	70	83	+	14.2414	6.24e-06	0.0143	CGCCCCGCCCATCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	-	14.3091	6.24e-06	0.0548	CGCCTCCGGGCG
ZNF143	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	45	60	+	10.2586	6.24e-06	0.231	AGACCACAATGCACCG
ZNF143	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	55	70	-	10.2586	6.24e-06	0.231	AGACCACAATGCACCG
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	68	80	-	13.0635	6.24e-06	0.377	TGAGGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	68	80	-	13.0635	6.24e-06	0.377	TGAGGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	88	100	-	13.0635	6.24e-06	0.377	TGAGGGCACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	88	100	-	13.0635	6.24e-06	0.377	TGAGGGCACGTGA
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	-	14.9636	6.24e-06	0.606	ACCAGCTGTT
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	59	73	-	13.5	6.24e-06	0.0875	GGGATGAGTGAGCAA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	96	110	-	13.5	6.24e-06	0.0875	GGGATGAGTGAGCAA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	96	110	-	13.5	6.24e-06	0.0875	GGGATGAGTGAGCAA
SP2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	19	+	14.6207	6.25e-06	0.00313	GCCCCTCCTCCTGGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	22	36	-	14.6207	6.25e-06	0.00313	CCCCCGCCCCGCGTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	59	+	14.6207	6.25e-06	0.00313	CTCCCGCCCCCACTT
SP2	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	69	+	14.6207	6.25e-06	0.00313	CCCCCGCCCCGCGTC
SP2	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	93	+	14.6207	6.25e-06	0.00313	CCCCCGCCCCGCGTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	96	110	-	14.6207	6.25e-06	0.00313	GCCCCTCCTCCTGGA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	96	110	-	14.6207	6.25e-06	0.00313	GCCCCTCCTCCTGGA
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	45	+	11.3793	6.25e-06	0.171	AGGCACGTGGCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	81	-	11.3793	6.25e-06	0.171	AGGCACGTGGCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	81	-	11.3793	6.25e-06	0.171	AGGCACGTGGCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	81	-	11.3793	6.25e-06	0.171	AGGCACGTGGCA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	81	-	11.3793	6.25e-06	0.171	AGGCACGTGGCA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	33	47	-	13.8852	6.25e-06	0.028	GGCCCCGCCCCCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	54	68	-	13.8852	6.25e-06	0.028	GACCCCGCCCCTCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	54	68	-	13.8852	6.25e-06	0.028	GACCCCGCCCCTCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	54	68	-	13.8852	6.25e-06	0.028	GACCCCGCCCCTCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	54	68	-	13.8852	6.25e-06	0.028	GACCCCGCCCCTCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	62	76	-	13.8852	6.25e-06	0.028	CACCACGCCCCCTTC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	9	23	+	13.8852	6.25e-06	0.028	GGCCCCGCCCCCCCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	50	67	+	-3.80263	6.25e-06	0.019	GGCAGGAAGGGGGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	50	67	+	-3.80263	6.25e-06	0.019	GGCAGGAAGGGGGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	65	82	-	-3.80263	6.25e-06	0.019	GGCAGGAAGGGGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	65	82	-	-3.80263	6.25e-06	0.019	GGCAGGAAGGGGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	90	107	+	-3.80263	6.25e-06	0.019	GGGAAGCAGGCAGGAGAG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	73	87	+	14.1081	6.26e-06	0.124	GAGGGTCAGAGTTCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	73	87	+	14.1081	6.26e-06	0.124	GAGGGTCAGAGTTCA
REST	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	8	28	-	11.1735	6.26e-06	0.16	GTCAGCACAGGGGCCGGCACC
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	87	107	+	11.1735	6.26e-06	0.16	GTCAGCACAGGGGCCGGCACC
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	87	107	+	11.1735	6.26e-06	0.16	GTCAGCACAGGGGCCGGCACC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	25	44	+	10.9083	6.26e-06	0.0365	ACCGACCCCACCCCCTGCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	25	44	+	10.9083	6.26e-06	0.0365	ACCGACCCCACCCCCTGCCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	24	44	+	13.9184	6.27e-06	0.0049	GGAGGGGGAGAGAGGGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	25	45	+	13.9184	6.27e-06	0.0049	GGGGGCCGGAGGTGGGGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	41	61	+	13.9184	6.27e-06	0.0049	GGTGGCGGAGAAAGGGTAGGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	5	19	-	14.4	6.27e-06	0.0974	CGCCGCCCGCCGTGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	69	+	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	94	+	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	113	+	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	2	12	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	8	18	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	17	27	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	21	31	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	23	33	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	29	39	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	35	45	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	38	48	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	51	-	14.6724	6.27e-06	0.00791	CCCCCACCCCC
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.0.0	25	35	+	13.8448	6.27e-06	0.215	GGCTGTGGTCT
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.1.0	25	35	+	13.8448	6.27e-06	0.215	GGCTGTGGTCT
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	25	36	+	14.3279	6.27e-06	0.0509	GAACCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	90	-	14.3279	6.27e-06	0.0509	GAACCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	90	-	14.3279	6.27e-06	0.0509	GAACCGGAAGTC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	40	57	-	-3.81579	6.28e-06	0.019	GGAAGAGGGGAAGGTTTT
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	12	24	-	14.3788	6.28e-06	0.341	GTTAATGATTATC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	68	82	-	14.2	6.28e-06	0.0744	CAGGGGGAGGGGGCA
USF1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	43	+	14.6735	6.28e-06	0.0602	CTCACGTGACT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	74	88	-	14.6061	6.28e-06	0.037	ATCTCGCGAGAACGA
ZBTB33	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	27	41	+	14.6061	6.28e-06	0.037	ATCTCGCGAGAACGA
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	12	21	+	14.5963	6.28e-06	0.0216	CCCCCCCCAG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	8	17	-	14.5963	6.28e-06	0.0216	CCCCCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	8	17	-	14.5963	6.28e-06	0.0216	CCCCCCCCAG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	74	83	-	14.5963	6.28e-06	0.0216	CCCCCCCCAG
Gfi1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	12	21	+	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	63	72	+	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	43	52	-	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	43	52	-	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	43	52	-	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	43	52	-	12.7195	6.29e-06	0.241	TAAATCACTG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	94	103	-	12.7195	6.29e-06	0.241	TAAATCACTG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	46	59	+	9.45455	6.29e-06	0.095	CGATGGCGTCATCA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	46	59	+	9.45455	6.29e-06	0.095	CGATGGCGTCATCA
NFYB	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	7	21	-	14.9038	6.29e-06	0.0638	CATTTAACCAATGAG
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	74	85	-	14.7115	6.3e-06	0.0497	CAGAATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	74	85	-	14.7115	6.3e-06	0.0497	CAGAATGGCGGC
CREB3	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	51	64	-	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	51	64	+	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	51	64	+	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	51	64	+	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	51	64	+	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	51	64	+	14.4714	6.3e-06	0.196	GCGCTACGTCATCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	43	59	-	14.2857	6.3e-06	0.338	GGGTGACCGCGCGTTCA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	43	59	-	14.2857	6.3e-06	0.338	GGGTGACCGCGCGTTCA
TCF4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	66	75	+	14.1429	6.3e-06	0.22	CACACCTGCG
ELF3	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	69	81	+	14.0345	6.3e-06	0.102	GTGCCGGAAGTAA
KLF14	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	10	23	-	14.2241	6.3e-06	0.0143	GGCTCCGCCCCCTG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	31	44	-	14.2241	6.3e-06	0.0143	AAACACGCCCCCGC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	55	68	+	14.2241	6.3e-06	0.0143	AAACACGCCCCCGC
KLF14	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	92	105	+	14.2241	6.3e-06	0.0143	GGCTCCGCCCCCTG
CTCF	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	21	39	-	13.6721	6.3e-06	0.0569	CGGACGCTGGGGGGCGGCG
Stat4	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	35	48	+	14.6897	6.31e-06	0.119	TTTACAGGAAACTG
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	25	41	-	6.84848	6.31e-06	0.708	GGTTCATCGGGAGGGCA
REST	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	57	77	-	11.1531	6.32e-06	0.16	TGCAGCACTTGGGAGAGGTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	9	23	+	14.6034	6.32e-06	0.00315	CTCCCTCCCCTCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	9	23	+	14.6034	6.32e-06	0.00315	CTCCCTCCCCTCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	4	18	-	14.6034	6.32e-06	0.00315	TCCCCTCCTCCCCGG
SP2	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	28	42	+	14.6034	6.32e-06	0.00315	TCCCCTCCCCTCCGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	30	44	+	14.6034	6.32e-06	0.00315	CTCCCTCCTCCCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	45	+	14.6034	6.32e-06	0.00315	TCCCCGCCCTCGGGG
SP2	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	73	87	-	14.6034	6.32e-06	0.00315	TCCCCTCCCCTCCGG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.1455	6.32e-06	0.0567	ACCGGATGTG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	+	14.6727	6.32e-06	0.0599	TGCCCGAGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	-	14.6727	6.32e-06	0.0599	TGCCCGAGGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	96	106	+	14.9455	6.32e-06	0.00464	GCGGGTGCGCG
JUN	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	22	34	-	15	6.33e-06	0.297	AGGGTGATGTCAC
JUN	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	37	49	+	15	6.33e-06	0.297	AGGGTGATGTCAC
JUN	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	66	78	-	15	6.33e-06	0.297	AGGGTGATGTCAC
JUN	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	81	93	+	15	6.33e-06	0.297	AGGGTGATGTCAC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	4	19	+	14.2727	6.34e-06	0.03	CCCCGCCCACCCCGCT
EGR1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	27	+	14.5385	6.34e-06	0.00576	GTCCCGCCCCTGCC
EGR1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	65	+	14.5385	6.34e-06	0.00576	GTCCCGCCCCTGCC
EGR1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	50	63	-	14.5385	6.34e-06	0.00576	GTCCCGCCCCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	51	64	-	14.5385	6.34e-06	0.00576	CTTCCGCCCACGTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	44	60	-	11.5273	6.34e-06	0.0081	GCCGCCCCGCCCCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	44	60	-	11.5273	6.34e-06	0.0081	GCCGCCCCGCCCCCGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	14.6923	6.34e-06	0.0401	GGCGGAAGTA
ETV6	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	14.6923	6.34e-06	0.0401	GGCGGAAGTA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	19	28	-	12.5714	6.34e-06	0.0746	AATCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	19	28	-	12.5714	6.34e-06	0.0746	AATCACGTGG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	14.6923	6.34e-06	0.0401	GGCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	14.6923	6.34e-06	0.0401	GGCGGAAGTA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	6	26	+	13.898	6.34e-06	0.0049	GGAAGAGCGGAGGAAGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	10	30	+	13.898	6.34e-06	0.0049	GGGGGCGCCCGGGAGGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	27	47	+	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	27	47	+	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	27	47	+	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	27	47	+	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	55	+	13.898	6.34e-06	0.0049	CGGGGCGGGGGGGGCGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	24	44	-	13.898	6.34e-06	0.0049	CGGGGCGGGGGGGGCGGAGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	58	78	+	13.898	6.34e-06	0.0049	GAATGAGGTAGCGGTGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	47	67	-	13.898	6.34e-06	0.0049	AGAGGGGGGTGGGGTGGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	78	98	-	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	78	98	-	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	78	98	-	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	78	98	-	13.898	6.34e-06	0.0049	GGAGGGGGTGGAGGGAGGGAA
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	33	43	-	15.1064	6.35e-06	0.157	AGTGACTCATG
Myod1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	95	+	14.7347	6.35e-06	0.0824	AGCAGCTGTTTTC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	46	58	-	14.7347	6.35e-06	0.0824	CCCAGCTGCCCTC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	80	94	-	14.4545	6.35e-06	0.116	GTAGTTTCTCTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	80	94	-	14.4545	6.35e-06	0.116	GTAGTTTCTCTTCCT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	47	61	+	14	6.35e-06	0.184	GTGACTCTGCAGCTG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	52	66	-	13.0517	6.36e-06	0.0251	CCCCGCCTCCGCGAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	52	66	-	13.0517	6.36e-06	0.0251	CCCCGCCTCCGCGAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	52	66	-	13.0517	6.36e-06	0.0251	CCCCGCCTCCGCGAC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	52	66	-	13.0517	6.36e-06	0.0251	CCCCGCCTCCGCGAC
EGR3	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	36	50	+	13.0517	6.36e-06	0.0251	CTCCTCCCCCGCGCT
Klf12	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	27	41	-	13.8525	6.36e-06	0.0282	GGCCCCGCCCAGTCC
Klf12	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	74	88	+	13.8525	6.36e-06	0.0282	GGCCCCGCCCAGTCC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	57	75	-	13.6557	6.36e-06	0.0569	GGGCCTGCGGGGGGCGGTT
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	+	13.3303	6.37e-06	0.46	TGTCAGATGTCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	-	14.3091	6.37e-06	0.0397	AGCCCGAGGCT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	-	14.8525	6.37e-06	0.0457	CGCCCTTAGGGCG
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	37	57	-	11.1327	6.37e-06	0.16	GCCAGGACCTGGGAGGGGAGC
PRDM1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	78	92	-	14.4727	6.38e-06	0.22	GGGTAGGGAAAGTGA
IRF1	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	5	25	+	14.0806	6.38e-06	0.0913	CTAGTCTTTTGCTTTCTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	57	77	+	14.0806	6.38e-06	0.0913	CTAGTCTTTTGCTTTCTTTTT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	+	14.8852	6.38e-06	0.0539	TCCCTCCGGGGCA
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	9	25	-	11.5091	6.38e-06	0.0081	TGGGACACGCCCCTCTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	9	25	-	11.5091	6.38e-06	0.0081	TGGGACACGCCCCTCTG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	59	75	-	11.5091	6.38e-06	0.0081	CAGACTCCGCCCCCCGG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	59	75	-	11.5091	6.38e-06	0.0081	CAGACTCCGCCCCCCGG
SP2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	26	40	+	14.5862	6.38e-06	0.00317	CCTCCGCCCTCCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	24	38	-	14.5862	6.38e-06	0.00317	GCCCCACCCACGTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	24	38	-	14.5862	6.38e-06	0.00317	GCCCCACCCACGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	24	38	-	14.5862	6.38e-06	0.00317	GCCCCACCCACGTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	30	44	-	14.5862	6.38e-06	0.00317	GCCCCTCCTCAGCCC
SP2	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	82	96	+	14.5862	6.38e-06	0.00317	CTTCCGCCTCCCTCC
SP2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	75	89	-	14.5862	6.38e-06	0.00317	CCTCCGCCCTCCCGC
SCRT1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	72	86	-	13.918	6.39e-06	0.494	GAGCAACAGGTTAAG
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	3	13	+	14.5102	6.4e-06	0.672	ATTGCACAAGC
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	3	13	+	14.5102	6.4e-06	0.672	ATTGCACAAGC
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	3	13	+	14.5102	6.4e-06	0.672	ATTGCACAAGC
EGR3	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	39	53	-	13.0345	6.4e-06	0.0251	GCACGCTCACGCACG
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	17	36	+	10.8532	6.4e-06	0.037	CGCCACACCACAACCTGCCC
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	+	14.7547	6.4e-06	1	CGTTACGTAATT
SP8	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	5	16	-	14.3947	6.4e-06	0.0134	CCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	13	24	-	14.3947	6.4e-06	0.0134	ACCACGCCCCTA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	13	24	-	14.3947	6.4e-06	0.0134	ACCACGCCCCTA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	13	24	-	14.3947	6.4e-06	0.0134	ACCACGCCCCTA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	13	24	-	14.3947	6.4e-06	0.0134	ACCACGCCCCTA
SP8	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	51	+	14.3947	6.4e-06	0.0134	CCCCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	91	102	+	14.3947	6.4e-06	0.0134	ACCACGCCCCTA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	110	+	14.3947	6.4e-06	0.0134	CCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	110	+	14.3947	6.4e-06	0.0134	CCCCCGCCCCCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	22	36	+	4.84286	6.41e-06	0.629	CAGGTCAGATGGTCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	20	37	+	-3.88158	6.41e-06	0.0192	GAGGGAAGGGAAGGCGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	37	54	+	-3.88158	6.41e-06	0.0192	GAGGGAAGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	61	78	-	-3.88158	6.41e-06	0.0192	GAGGGAAGGGAAGGCGGG
TBX20	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	37	47	-	14.4545	6.41e-06	0.676	TAAGTGTGAAG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	47	57	-	14.4545	6.41e-06	0.676	TAAGTGTGAAG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	47	57	-	14.4545	6.41e-06	0.676	TAAGTGTGAAG
TBX20	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	58	68	+	14.4545	6.41e-06	0.676	TAAGTGTGAAG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	68	78	+	14.4545	6.41e-06	0.676	TAAGTGTGAAG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	68	78	+	14.4545	6.41e-06	0.676	TAAGTGTGAAG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	7	20	+	14.5192	6.42e-06	0.00577	GCTCAGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	7	20	+	14.5192	6.42e-06	0.00577	GCTCAGCCCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	34	+	14.5192	6.42e-06	0.00577	GCCCCTCCCCTGCC
EGR1	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	10	23	-	14.5192	6.42e-06	0.00577	GCTCAGCCCCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	56	69	-	14.5192	6.42e-06	0.00577	TCTCCGCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	56	69	-	14.5192	6.42e-06	0.00577	TCTCCGCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	56	69	-	14.5192	6.42e-06	0.00577	TCTCCGCCGCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	56	69	-	14.5192	6.42e-06	0.00577	TCTCCGCCGCCGCA
EGR1	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	92	105	+	14.5192	6.42e-06	0.00577	GCTCAGCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	95	108	-	14.5192	6.42e-06	0.00577	GCTCAGCCCCCGCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	43	63	+	13.8776	6.42e-06	0.00493	AGAAGAGGAAGTGGGAGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	43	63	+	13.8776	6.42e-06	0.00493	AGAAGAGGAAGTGGGAGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	44	-	13.8776	6.42e-06	0.00493	CGGGGGGGGGGGGGGGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	49	69	-	13.8776	6.42e-06	0.00493	GGGGCAGGGCGGTGGGTGAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	52	72	-	13.8776	6.42e-06	0.00493	AGAAGAGGAAGTGGGAGAGGC
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	53	65	-	14.37	6.43e-06	1	TTTATGGTAATTA
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	12	24	+	14.37	6.43e-06	1	TTTATGGTAATTA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	30	40	+	14.5816	6.43e-06	0.167	GGCCACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	30	40	+	14.5816	6.43e-06	0.167	GGCCACGTGGA
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	30	40	+	14.5816	6.43e-06	0.167	GGCCACGTGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	30	40	+	14.5816	6.43e-06	0.167	GGCCACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	30	40	+	14.5816	6.43e-06	0.167	GGCCACGTGGA
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	14.5152	6.43e-06	0.585	AACACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	14.5152	6.43e-06	0.585	AACACGTGCC
HNF4G	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	64	-	14.4808	6.43e-06	0.253	CAGGGCCAAAGTTTA
HNF4G	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	93	-	14.4808	6.43e-06	0.253	CAGGGCCAAAGTTTA
IRF1	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	59	79	+	14.0645	6.43e-06	0.0913	TATCACTTTCATTTTTATAGC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	103	-	11.7759	6.43e-06	0.196	AAACACGTGCCT
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	103	-	11.7759	6.43e-06	0.196	AAACACGTGCCT
ELF4	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	78	89	+	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	17	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	17	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	17	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	17	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	17	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	37	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	37	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	37	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	37	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	37	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	65	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	65	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	65	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	65	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	65	-	14.2951	6.43e-06	0.0509	ACGCCGGAAGTG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	53	65	-	14.8689	6.44e-06	0.283	GGATGATGCCATA
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	4	14	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	38	48	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	54	64	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	65	75	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	78	88	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	87	97	-	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	14	24	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	14	24	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	27	37	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	27	37	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	40	50	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	51	61	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	65	75	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	83	93	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	83	93	+	14.8966	6.45e-06	0.0231	GGGAGGGAGGC
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	91	105	-	13.9672	6.46e-06	0.184	CTGACTCAGCAGCAA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	27	41	-	14.569	6.46e-06	0.0032	AGCCCGCCCCTGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	27	41	-	14.569	6.46e-06	0.0032	AGCCCGCCCCTGCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	69	83	+	14.569	6.46e-06	0.0032	GTCCCGCCTTCACTC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	+	14.2909	6.46e-06	0.0397	CGCCCGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	+	14.2909	6.46e-06	0.0397	CGCCCGAGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	+	14.2909	6.46e-06	0.0397	CGCCCGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	+	14.2909	6.46e-06	0.0397	CGCCCGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	+	14.2909	6.46e-06	0.0397	CGCCCGAGGCC
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	35	46	+	14.5246	6.46e-06	0.334	TATGGCGCCCAG
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	35	46	+	14.5246	6.46e-06	0.334	TATGGCGCCCAG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	35	46	+	14.5246	6.46e-06	0.334	TATGGCGCCCAG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	35	46	+	14.5246	6.46e-06	0.334	TATGGCGCCCAG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	35	46	+	14.5246	6.46e-06	0.334	TATGGCGCCCAG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	67	77	+	14.803	6.46e-06	0.0344	TGCCACGCCCT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	57	71	+	13.4211	6.46e-06	0.0875	CCACTGACTCAGCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	68	84	-	11.4727	6.47e-06	0.00819	GAAGCCACGCCTTCCCC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	3	14	+	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	3	14	+	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	3	14	+	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	3	14	+	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	3	14	+	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	23	34	+	14.8367	6.47e-06	0.108	GGCCAGGGGGAG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	23	34	+	14.8367	6.47e-06	0.108	GGCCAGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	23	34	+	14.8367	6.47e-06	0.108	GGCCAGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	23	34	+	14.8367	6.47e-06	0.108	GGCCAGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	23	34	+	14.8367	6.47e-06	0.108	GGCCAGGGGGAG
INSM1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	101	112	-	14.8367	6.47e-06	0.108	GGCCTGGGGTCG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	31	44	+	14.7879	6.47e-06	0.0168	CTGGGTGGGGCCTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	16	29	-	14.7879	6.47e-06	0.0168	CTGGGTGGGGCCTG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	61	75	-	14.3846	6.47e-06	0.365	AGGGCACCATGGCTT
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	61	75	-	14.3846	6.47e-06	0.365	AGGGCACCATGGCTT
Creb5	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	32	-	14.8	6.47e-06	0.0992	TGTGACGTCACC
Creb5	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	94	+	14.8	6.47e-06	0.0992	TGTGACGTCACC
SP1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	29	39	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	30	40	-	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	49	59	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	49	59	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	49	59	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	40	50	-	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	58	68	+	14.7692	6.47e-06	0.0039	GTCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	58	68	+	14.7692	6.47e-06	0.0039	GTCCCTCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	65	75	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	56	66	-	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	56	66	-	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	75	85	+	14.7692	6.47e-06	0.0039	GCCCCTCCTCT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	45	57	+	14.2273	6.48e-06	0.196	AGGGGCTCCCCCA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	68	80	+	14.2273	6.48e-06	0.196	AGGGGCTCCCCCA
NFIL3	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	47	57	-	14.9091	6.49e-06	1	TTACGTAATGT
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	12	26	-	13	6.49e-06	0.0251	CCACGCCCACACCCT
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	47	61	+	13	6.49e-06	0.0251	CCACGCCCACACCCT
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	64	78	-	14.0631	6.49e-06	0.124	GGAGGGGAAAGGTAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	37	51	+	14.0631	6.49e-06	0.124	GGAGGGGAAAGGTAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	37	51	+	14.0631	6.49e-06	0.124	GGAGGGGAAAGGTAA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	37	51	-	14.3455	6.49e-06	0.0974	AACCTCCCGCGGCGT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	37	51	-	14.3455	6.49e-06	0.0974	AACCTCCCGCGGCGT
EHF	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	76	-	14.5738	6.5e-06	0.0748	GACCAGGAAGTG
EHF	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	82	93	+	14.5738	6.5e-06	0.0748	GACCAGGAAGTG
ZNF263	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	36	56	+	13.8571	6.5e-06	0.00496	GGAGGACCCGGGGCTAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	58	78	+	13.8571	6.5e-06	0.00496	GGAGGCGGCGCTGGCGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	58	78	+	13.8571	6.5e-06	0.00496	GGAGGCGGCGCTGGCGGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	58	78	+	13.8571	6.5e-06	0.00496	GGAGGCGGCGCTGGCGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	58	78	+	13.8571	6.5e-06	0.00496	GGAGGCGGCGCTGGCGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	50	70	-	13.8571	6.5e-06	0.00496	AGGAGAGGGGGGTGGGGTGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	58	78	-	13.8571	6.5e-06	0.00496	AAGGCAGCGGCAGGGGGGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	59	79	-	13.8571	6.5e-06	0.00496	GGAGGACCCGGGGCTAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	59	79	-	13.8571	6.5e-06	0.00496	GAAGGCAGCGGCGGGGGGGGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	69	+	10.8073	6.51e-06	0.0374	CCCCCGCCCCCCCCCCCCGC
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	43	56	-	12.2245	6.51e-06	0.0605	GAGGGGCTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	43	56	-	12.2245	6.51e-06	0.0605	GAGGGGCTCGGGGA
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	94	108	-	11.1798	6.51e-06	0.163	GGCACCCAGGCTGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	15	26	+	14.6923	6.51e-06	0.0502	CAACATGGCTGT
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	15	26	+	14.6923	6.51e-06	0.0502	CAACATGGCTGT
YY1	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	39	50	+	14.6923	6.51e-06	0.0502	CAAGATGGCGCT
E2F4	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	14	24	-	15.0862	6.51e-06	0.0249	GGGCGGGAGCA
E2F4	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	70	80	+	15.0862	6.51e-06	0.0249	GGGCGGGAGCA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	92	112	+	11.0816	6.51e-06	0.16	TCCAGCAGCGATGACAGCGAC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	92	112	+	11.0816	6.51e-06	0.16	TCCAGCAGCGATGACAGCGAC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	61	71	+	15.1455	6.51e-06	0.0773	TGTGACTCAGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	64	74	-	15.1455	6.51e-06	0.0773	TGTGACTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	64	74	-	15.1455	6.51e-06	0.0773	TGTGACTCAGG
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	88	98	+	15.1455	6.51e-06	0.0773	TGTGACTCAGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	83	93	-	15.1455	6.51e-06	0.0773	TGTGACTCAGG
EGR1	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	18	31	-	14.5	6.52e-06	0.00584	TCGCCGCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	60	73	-	14.5	6.52e-06	0.00584	GCGCAGCCCCCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	84	97	+	14.5	6.52e-06	0.00584	TCGCCGCCGCCGCA
ELF3	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	59	71	+	13.9483	6.52e-06	0.103	AACCAGGAAGTTC
HSF2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	79	91	+	14.1091	6.52e-06	1	TTCCAGAACAGTC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	14.3269	6.52e-06	0.0768	GTCACGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	14.3269	6.52e-06	0.0768	GTCACGTGAT
ELK4	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	36	-	14.7091	6.52e-06	0.0273	TGACTTCCGGC
ELK4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	40	-	14.7091	6.52e-06	0.0273	TGACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	79	89	+	14.7091	6.52e-06	0.0273	TGACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	79	89	+	14.7091	6.52e-06	0.0273	TGACTTCCGGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	51	65	-	14.5455	6.52e-06	0.0372	GTCTCGCGAGAGACG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	51	65	-	14.5455	6.52e-06	0.0372	GTCTCGCGAGAGACG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	77	91	-	14.5455	6.52e-06	0.0372	GTCTCGCGAGAGACG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	77	91	-	14.5455	6.52e-06	0.0372	GTCTCGCGAGAGACG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	32	42	-	15.1455	6.52e-06	0.0896	GAATGACTCAC
FOSL2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	37	47	-	15.1455	6.52e-06	0.0896	GAGTGACTCAC
Arx	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	35	51	+	14.5476	6.53e-06	1	GTCCGCCAATTAGGAGA
Foxa2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	56	+	14.52	6.54e-06	0.439	TGTTGACATAGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	49	59	+	14.7705	6.54e-06	0.0223	CCGGAAGCGAT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	49	59	+	14.7705	6.54e-06	0.0223	CCGGAAGCGAT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	49	59	+	14.7705	6.54e-06	0.0223	CCGGAAGCGAT
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	67	77	+	14.7705	6.54e-06	0.0223	CCGGAAGCAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	56	66	-	14.7705	6.54e-06	0.0223	CCGGAAGCAGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	56	66	-	14.7705	6.54e-06	0.0223	CCGGAAGCAGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	56	66	-	14.7705	6.54e-06	0.0223	CCGGAAGCAGC
Znf423	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	14	28	-	11.1685	6.54e-06	0.163	GGCCTCCAGGGTTGC
Znf423	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	87	101	+	11.1685	6.54e-06	0.163	GGCCTCCAGGGTTGC
BATF3	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	36	49	-	9.36364	6.54e-06	0.0957	CTCTGACGTCACCA
BATF3	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	66	79	+	9.36364	6.54e-06	0.0957	CTCTGACGTCACCA
CREB3	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	47	60	-	14.4	6.54e-06	0.196	CGGCCACGTGATCA
NHLH1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	33	-	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	58	-	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	58	-	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	91	+	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	91	+	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	106	-	14.6724	6.54e-06	0.0736	AGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	106	-	14.6724	6.54e-06	0.0736	AGCAGCTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	-	14.6897	6.54e-06	0.147	GGCACGTGTG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	-	14.6897	6.54e-06	0.147	GGCACGTGTG
HINFP	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	13	24	-	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	38	49	-	14.7879	6.55e-06	0.0933	GGACGTCCGCGA
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	38	49	-	14.7879	6.55e-06	0.0933	GGACGTCCGCGA
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	91	102	+	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	91	102	+	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	91	102	+	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	91	102	+	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	91	102	+	14.7879	6.55e-06	0.0933	GACCGTCCGCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	1	15	-	14.5517	6.55e-06	0.00322	GTCCCGCCCCGCACA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	1	15	-	14.5517	6.55e-06	0.00322	GTCCCGCCCCGCACA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	1	15	-	14.5517	6.55e-06	0.00322	GTCCCGCCCCGCACA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	1	15	-	14.5517	6.55e-06	0.00322	GTCCCGCCCCGCACA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	26	40	-	14.5517	6.55e-06	0.00322	CCCCCTCCCCTCCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	26	40	-	14.5517	6.55e-06	0.00322	CCCCCTCCCCTCCCA
SP2	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	51	65	+	14.5517	6.55e-06	0.00322	GCACCGCCTCCTCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	58	72	+	14.5517	6.55e-06	0.00322	GTCCCTCCCCTTTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	58	72	+	14.5517	6.55e-06	0.00322	GTCCCTCCCCTTTTC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	50	64	-	14.5517	6.55e-06	0.00322	GCACCGCCTCCTCGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	50	64	-	14.5517	6.55e-06	0.00322	GCACCGCCTCCTCGG
Dlx1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	68	77	+	10.8772	6.55e-06	1	CATAATTATC
ERF	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	14.8143	6.55e-06	0.05	ACCGGAAATA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	6	16	-	14.8545	6.55e-06	0.00478	GCGCATGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	6	16	-	14.8545	6.55e-06	0.00478	GCGCATGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	6	16	-	14.8545	6.55e-06	0.00478	GCGCATGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	6	16	-	14.8545	6.55e-06	0.00478	GCGCATGCCCG
ZBTB18	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	38	50	-	14.9143	6.56e-06	0.729	TAACCAGATGTGC
Klf12	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	82	96	-	13.7869	6.56e-06	0.0286	GGCCCCGCCCCACAT
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	21	31	+	14.7143	6.57e-06	0.0665	GACAGCTGCAA
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	21	31	+	14.7143	6.57e-06	0.0665	GACAGCTGCAA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	45	57	+	10.4082	6.57e-06	0.233	AGGGGCTCCCCCA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	68	80	+	10.4082	6.57e-06	0.233	AGGGGCTCCCCCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	2	17	+	14.2182	6.57e-06	0.03	CCCCGCCCCCCCGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	2	17	+	14.2182	6.57e-06	0.03	CCCCGCCCCCCCGCCT
EGR4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	15	30	-	14.2182	6.57e-06	0.03	CCCCGCCCCCCCGCCT
EGR4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	85	100	+	14.2182	6.57e-06	0.03	CCCCGCCCCCCCGCCT
EGR4	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	98	113	-	14.2182	6.57e-06	0.03	CCCCGCCCCCCCGCCT
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	42	52	-	13.5455	6.57e-06	1	AAGGTGTCAAG
TBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	42	52	-	13.5455	6.57e-06	1	AAGGTGTCAAG
TFAP2A	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	+	14.2727	6.57e-06	0.0397	CGCCTCGGGCA
TFAP2A	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	-	14.2727	6.57e-06	0.0397	CGCCTCGGGCA
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	29	42	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	29	42	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	29	42	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	29	42	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	29	42	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	70	83	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	70	83	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	70	83	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	70	83	+	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	73	86	-	14.3276	6.58e-06	0.0695	GCTGCCATGGAGAC
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	+	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	+	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	+	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	+	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	+	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	-	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	-	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	-	14.898	6.58e-06	0.14	GGTGACTCATC
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	-	14.898	6.58e-06	0.14	GGTGACTCATC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	85	103	+	13.5902	6.59e-06	0.0569	TGGCCGCCAGTAGGCGGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	85	103	+	13.5902	6.59e-06	0.0569	TGGCCGCCAGTAGGCGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	2	22	+	13.8367	6.59e-06	0.00498	GAAGAAGAGGAGGGGAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	2	22	+	13.8367	6.59e-06	0.00498	GAAGAAGAGGAGGGGAAAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	15	35	-	13.8367	6.59e-06	0.00498	GGGGGCGGAGAGTAAAAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	44	64	+	13.8367	6.59e-06	0.00498	GGGGGCGGAGAGTAAAAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	27	47	-	13.8367	6.59e-06	0.00498	AGGGAAGGGCGGAGCGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	27	47	-	13.8367	6.59e-06	0.00498	AGGGAAGGGCGGAGCGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	27	47	-	13.8367	6.59e-06	0.00498	AGGGAAGGGCGGAGCGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	27	47	-	13.8367	6.59e-06	0.00498	AGGGAAGGGCGGAGCGGGAGG
SP1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	13	+	14.75	6.59e-06	0.00396	TCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	22	+	14.75	6.59e-06	0.00396	TCCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	22	+	14.75	6.59e-06	0.00396	TCCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	22	+	14.75	6.59e-06	0.00396	TCCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	22	+	14.75	6.59e-06	0.00396	TCCCCGCCCAC
KLF5	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	3	12	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	4	13	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	9	18	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	10	19	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	10	19	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	10	19	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	29	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	21	30	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	21	30	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	14	23	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	14	23	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	14	23	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	14	23	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	35	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	18	27	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	29	38	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	22	31	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	24	33	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	33	42	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	25	34	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	30	39	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	31	40	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	32	41	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	36	45	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	37	46	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	37	46	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	37	46	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	37	46	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	37	46	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	39	48	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	57	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	40	49	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	58	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	58	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	41	50	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	41	50	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	42	51	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	64	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	64	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	64	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	68	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	79	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	64	73	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	64	73	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	84	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	93	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	77	86	-	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	112	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	104	113	+	14.7755	6.59e-06	0.00509	CCCCCACCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	38	49	+	14.3684	6.59e-06	0.0134	AACACTCCCACT
SP8	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	50	61	+	14.3684	6.59e-06	0.0134	CACCCGCCCACT
SP8	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	77	88	+	14.3684	6.59e-06	0.0134	AACACGCCCATT
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	91	102	-	14.3684	6.59e-06	0.0134	AACACTCCCACT
ELF5	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	43	53	+	13.6	6.6e-06	0.0953	TCCCGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	57	67	+	13.6	6.6e-06	0.0953	TCCCGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	57	67	+	13.6	6.6e-06	0.0953	TCCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	57	67	+	13.6	6.6e-06	0.0953	TCCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	57	67	+	13.6	6.6e-06	0.0953	TCCCGGAAGTT
ELF5	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	72	-	13.6	6.6e-06	0.0953	TCCCGGAAGTT
PRDM1	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	28	42	+	14.4182	6.6e-06	0.22	AGAGAGAGAGAGTGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	73	87	-	14.4182	6.6e-06	0.22	AGAGAGAGAGAGTGA
ID4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	37	-	14.0328	6.6e-06	0.351	CGCACCTGTC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	37	-	14.0328	6.6e-06	0.351	CGCACCTGTC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	37	-	14.0328	6.6e-06	0.351	CGCACCTGTC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	37	-	14.0328	6.6e-06	0.351	CGCACCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	37	-	14.0328	6.6e-06	0.351	CGCACCTGTC
ID4	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	95	104	+	14.0328	6.6e-06	0.351	CGCACCTGTC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	15.2308	6.6e-06	0.1	CGCACGTGAC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	15.2308	6.6e-06	0.1	CGCACGTGAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	29	+	14.4808	6.61e-06	0.00589	ACCCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	29	+	14.4808	6.61e-06	0.00589	ACCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	8	21	-	14.4808	6.61e-06	0.00589	CCGCCGCCGACTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	31	44	-	14.4808	6.61e-06	0.00589	TGCCCGCCCCCGGG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	59	72	+	14.4808	6.61e-06	0.00589	TGCCCGCCCCCGGG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	85	99	-	12.9483	6.61e-06	0.0251	GCCCGCCCACGTAAG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	85	99	-	12.9483	6.61e-06	0.0251	GCCCGCCCACGTAAG
EGR3	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	16	30	+	12.9483	6.61e-06	0.0251	GCCCGCCCACGTAAG
FOXP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	18	28	-	14.6515	6.61e-06	0.766	CAGTAAACAGA
FOXP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	18	28	-	14.6515	6.61e-06	0.766	CAGTAAACAGA
Arntl	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	13	+	14.4426	6.61e-06	0.102	TGTCACGTGT
Arntl	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	53	62	+	14.4426	6.61e-06	0.102	TGTCACGTGT
Arntl	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	102	111	-	14.4426	6.61e-06	0.102	TGTCACGTGT
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	+	13.9091	6.62e-06	0.0546	CGTTGCTATGGCGCCC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	+	13.9091	6.62e-06	0.0546	CGTTGCTATGGCGCCC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	+	13.9091	6.62e-06	0.0546	CGTTGCTATGGCGCCC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	+	13.9091	6.62e-06	0.0546	CGTTGCTATGGCGCCC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	+	13.9091	6.62e-06	0.0546	CGTTGCTATGGCGCCC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	11	25	+	14.1143	6.62e-06	0.0744	CGGTGTCAAAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	11	25	+	14.1143	6.62e-06	0.0744	CGGTGTCAAAGGCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	11	25	+	14.1143	6.62e-06	0.0744	CGGTGTCAAAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	11	25	+	14.1143	6.62e-06	0.0744	CGGTGTCAAAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	11	25	+	14.1143	6.62e-06	0.0744	CGGTGTCAAAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	14	28	-	14.1143	6.62e-06	0.0744	AGAGGGGAGAGGGGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	14	28	-	14.1143	6.62e-06	0.0744	AGAGGGGAGAGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	66	80	+	14.1143	6.62e-06	0.0744	CGGTGTGAAGGGTCA
SP2	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	22	36	-	14.5345	6.62e-06	0.00326	GACCCGCCCCCAGCG
SP2	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	93	+	14.5345	6.62e-06	0.00326	GACCCGCCCCCAGCG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	86	98	-	14.6939	6.62e-06	0.0824	CCCAGCTGCTCCG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	87	99	-	14.6939	6.62e-06	0.0824	TGCAGCTGTTTCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	87	99	-	14.6939	6.62e-06	0.0824	TGCAGCTGTTTCA
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	60	-	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	60	-	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	60	-	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	92	-	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	23	36	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	23	36	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	23	36	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	23	36	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	23	36	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
Nr2f6	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	55	68	+	13.5303	6.63e-06	0.176	AAGGTCGAAGTTCA
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	12	23	-	14.17	6.63e-06	0.632	CGTATGCAAATG
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	11	25	-	14.2338	6.63e-06	0.291	GGTTAATGATTATCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	41	+	13.898	6.63e-06	0.0681	CGTGACGTCACT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	41	+	13.898	6.63e-06	0.0681	CGTGACGTCACT
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	41	+	13.898	6.63e-06	0.0681	CGTGACGTCACT
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	41	+	13.898	6.63e-06	0.0681	CGTGACGTCACT
RFX4	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	-	14.2273	6.63e-06	0.0722	GGGAGCCATGGTAACT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	14.8298	6.64e-06	0.0372	GCCGGAAGTC
Pax6	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	76	89	+	14.2111	6.64e-06	1	TTCACGCTTCTCTT
Gfi1b	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	70	80	+	14.8103	6.65e-06	0.347	AAACCTCAGCA
EGR4	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	73	88	-	14.2	6.65e-06	0.03	GAACTCCCACGCACGC
E2F6	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	3	13	-	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	44	54	-	14.8448	6.65e-06	0.0231	GCGCGGGAAGC
E2F6	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	48	58	-	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	82	92	-	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	83	93	-	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	22	32	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	23	33	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	23	33	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	38	48	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	38	48	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	57	67	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	61	71	+	14.8448	6.65e-06	0.0231	GCGCGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	61	71	+	14.8448	6.65e-06	0.0231	GCGCGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	61	71	+	14.8448	6.65e-06	0.0231	GCGCGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	61	71	+	14.8448	6.65e-06	0.0231	GCGCGGGAAGC
E2F6	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	102	112	+	14.8448	6.65e-06	0.0231	GCGCGGGAGGG
IRF1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	45	65	+	14	6.66e-06	0.0913	ATTTGCTTTCTTTTTCTCCAA
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	31	51	-	14	6.66e-06	0.0913	ATTTAGTTTTTTTTTTTTTTT
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	42	56	-	14.3091	6.66e-06	0.0974	GGCCTCCCGCAGTTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	76	90	+	14.3091	6.66e-06	0.0974	TGCCGCCCGCGGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	76	90	+	14.3091	6.66e-06	0.0974	TGCCGCCCGCGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	76	90	+	14.3091	6.66e-06	0.0974	TGCCGCCCGCGGCGG
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	34	44	-	14.7424	6.67e-06	0.0344	AGACACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	34	44	-	14.7424	6.67e-06	0.0344	AGACACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	34	44	-	14.7424	6.67e-06	0.0344	AGACACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	52	62	-	14.7424	6.67e-06	0.0344	AGACACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	52	62	-	14.7424	6.67e-06	0.0344	AGACACACCCA
XBP1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	87	100	+	14.4038	6.67e-06	0.446	GCGGACACGTCATT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	+	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	+	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	+	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	+	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	+	14.2545	6.67e-06	0.0548	CGCCCGGAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	-	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	-	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	-	14.2545	6.67e-06	0.0548	TGCCCCCGGCCG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	51	64	+	13.803	6.67e-06	0.198	GCGCTACGTCATCA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	51	64	+	13.803	6.67e-06	0.198	GCGCTACGTCATCA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	51	64	+	13.803	6.67e-06	0.198	GCGCTACGTCATCA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	51	64	+	13.803	6.67e-06	0.198	GCGCTACGTCATCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	51	64	+	13.803	6.67e-06	0.198	GCGCTACGTCATCA
CREB3L1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	51	64	-	13.803	6.67e-06	0.198	GCGCTACGTCATCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	16	36	+	13.8163	6.67e-06	0.00498	GGAGCCGGGAAGGAGGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	36	-	13.8163	6.67e-06	0.00498	GAGGGCGGCCGGGGGTGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	36	-	13.8163	6.67e-06	0.00498	GAGGGCGGCCGGGGGTGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	16	36	-	13.8163	6.67e-06	0.00498	AGGGGAGGCAGAGAAAAAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	16	36	-	13.8163	6.67e-06	0.00498	AGGGGAGGCAGAGAAAAAGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	37	57	+	13.8163	6.67e-06	0.00498	CGGGGAGGGGGTGAGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	27	47	-	13.8163	6.67e-06	0.00498	CGAGCAGCAGAGGGCGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	27	47	-	13.8163	6.67e-06	0.00498	CGAGCAGCAGAGGGCGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	29	49	-	13.8163	6.67e-06	0.00498	AGAGGAAGGGGAGGTGTTGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	68	88	+	13.8163	6.67e-06	0.00498	CGAGCAGCAGAGGGCGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	52	72	-	13.8163	6.67e-06	0.00498	GAGGGAAGCAGGAGAGAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	52	72	-	13.8163	6.67e-06	0.00498	GAGGGAAGCAGGAGAGAAAAA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	79	99	+	13.8163	6.67e-06	0.00498	AGGGGAGGCAGAGAAAAAGGC
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	28	42	+	14.036	6.67e-06	0.124	GTGGGTGAAAGGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	38	51	-	12.6383	6.67e-06	0.0891	AACCTCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	38	51	-	12.6383	6.67e-06	0.0891	AACCTCCCGCGGCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	52	68	+	11.3818	6.67e-06	0.00838	GATGCCCCTCCCCCCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	52	68	+	11.3818	6.67e-06	0.00838	GATGCCCCTCCCCCCCT
SP4	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	47	63	-	11.3818	6.67e-06	0.00838	GATGCCCCTCCCCCCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	67	83	+	11.3818	6.67e-06	0.00838	CTCGCCCCGCCCCGCTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	67	83	+	11.3818	6.67e-06	0.00838	CTCGCCCCGCCCCGCTC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	13	24	+	14.5484	6.67e-06	0.57	TTATGGTAATTA
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	53	64	-	14.5484	6.67e-06	0.57	TTATGGTAATTA
STAT1	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	57	67	+	15.2727	6.68e-06	0.156	CTTCCAGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	58	-	15.2727	6.68e-06	0.156	CTTCCAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	58	-	15.2727	6.68e-06	0.156	CTTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	58	-	15.2727	6.68e-06	0.156	CTTCCAGGAAG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	14.5517	6.68e-06	0.0591	ACCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	14.5517	6.68e-06	0.0591	ACCGGAAGTT
FEV	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	14.3077	6.68e-06	0.0647	ACCGGAAATA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	36	53	+	-4.01316	6.69e-06	0.0197	GGAAGGAACGGAAGCATG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	62	79	-	-4.01316	6.69e-06	0.0197	GGAAGGAACGGAAGCATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	62	79	-	-4.01316	6.69e-06	0.0197	GGAAGGAACGGAAGCATG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	36	47	+	14.7576	6.69e-06	0.0933	CCCCGTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	36	47	+	14.7576	6.69e-06	0.0933	CCCCGTCCGCGC
ELF1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	42	53	+	14.4364	6.69e-06	0.0563	TTCCCGGAAGTT
ELF1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	73	-	14.4364	6.69e-06	0.0563	TTCCCGGAAGTT
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	14	23	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	16	25	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	16	25	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	22	31	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	14	23	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	16	25	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	25	34	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	16	25	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	22	31	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	25	34	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	45	54	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	47	56	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	45	54	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	47	56	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	59	68	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	61	70	+	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	63	72	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	63	72	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	63	72	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	63	72	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	59	68	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	61	70	-	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	63	72	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	63	72	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	63	72	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	63	72	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	84	93	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	84	93	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	86	95	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	90	99	+	10.6694	6.69e-06	0.0254	GGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	84	93	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	84	93	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	86	95	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	90	99	-	10.6694	6.69e-06	0.0254	GCCGCGCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	31	41	+	14.6545	6.69e-06	0.0277	CTACTTCCGGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	78	-	14.6545	6.69e-06	0.0277	CTACTTCCGGG
Sox1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	16	30	+	11.9655	6.69e-06	1	CACAATAGGAGTGTG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	+	12.3	6.69e-06	0.0765	GGTTACCATGGAATCC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	+	12.3	6.69e-06	0.0765	GGTTACCATGGAATCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	11	24	+	14.4615	6.69e-06	0.00592	CTTCCGCTCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	11	24	+	14.4615	6.69e-06	0.00592	CTTCCGCTCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	42	+	14.4615	6.69e-06	0.00592	ACCCCACCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	42	+	14.4615	6.69e-06	0.00592	ACCCCACCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	25	38	-	14.4615	6.69e-06	0.00592	GCCCCTCCCCCTGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	25	38	-	14.4615	6.69e-06	0.00592	GCCCCTCCCCCTGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	25	38	-	14.4615	6.69e-06	0.00592	GCCCCTCCCCCTGG
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	91	104	-	14.4615	6.69e-06	0.00592	CTTCCGCTCCCGCC
TGIF1	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	+	8.76923	6.7e-06	0.451	TGACATGTGTCC
TGIF1	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	-	8.76923	6.7e-06	0.451	TGACATGTGTCC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	37	50	+	14.7424	6.7e-06	0.017	TCCACCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	37	50	+	14.7424	6.7e-06	0.017	TCCACCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	60	73	+	14.7424	6.7e-06	0.017	GCGGCCAGGGCCTA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	60	73	+	14.7424	6.7e-06	0.017	GCGGCCAGGGCCTA
KLF14	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	32	45	-	14.1034	6.7e-06	0.0148	TGCCACACCCACCC
KLF14	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	70	83	+	14.1034	6.7e-06	0.0148	TGCCACACCCACCC
Tcf12	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	47	+	14.6939	6.71e-06	0.0993	GGCAGCTGCCG
Tcf12	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	68	78	-	14.6939	6.71e-06	0.0993	GGCAGCTGCCG
CREB3	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	87	100	+	14.3571	6.71e-06	0.196	GTGCCACGTCAAGA
PKNOX1	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	-	10.3673	6.71e-06	0.428	TGACATGTGTCC
PKNOX1	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	+	10.3673	6.71e-06	0.428	TGACATGTGTCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	14	28	-	13.3421	6.71e-06	0.0875	AGAATGAGGCAGCAT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	50	60	-	14.569	6.71e-06	0.00819	GCCACTCCCCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	-	14.6	6.71e-06	0.0612	CGCCGCAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	-	14.6	6.71e-06	0.0612	CGCCGCAGGCT
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	9	23	-	13.7377	6.71e-06	0.0286	GGACACGCCCCTCTG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	9	23	-	13.7377	6.71e-06	0.0286	GGACACGCCCCTCTG
USF2	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	96	106	+	14.898	6.71e-06	0.0487	GCCAGGTGACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	31	47	+	11.3636	6.72e-06	0.0084	CTGACCCCGCCTCCCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	31	47	+	11.3636	6.72e-06	0.0084	CTGACCCCGCCTCCCGC
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	9	29	+	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	9	29	+	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	9	29	+	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	9	29	+	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	11	31	-	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	84	104	+	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
IRF1	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	86	106	-	13.9839	6.72e-06	0.0913	CCTCACTTTCGATTTCTGTAC
Znf423	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	53	67	+	11.0674	6.72e-06	0.163	GCCCCCCGGGGTGCC
Znf423	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	48	62	-	11.0674	6.72e-06	0.163	GCCCCCCGGGGTGCC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	+	14.0678	6.72e-06	1	CGTTACGTAATT
RFX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	+	13.8788	6.73e-06	0.055	TGTTGTCATAGCAATG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	16	29	+	13.7879	6.73e-06	0.198	ACGCCACGTGACCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	48	61	+	13.7879	6.73e-06	0.198	ACGCCACGTGACCC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	55	70	-	10.7818	6.73e-06	0.153	TGGGTTAGAGTCCAGC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	55	70	-	10.7818	6.73e-06	0.153	TGGGTTAGAGTCCAGC
POU4F2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	39	54	-	12.8182	6.74e-06	0.869	ATACATATTTAATTTA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	4	18	-	14.5493	6.74e-06	0.341	ACAGTGAAAACAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	4	18	-	14.5493	6.74e-06	0.341	ACAGTGAAAACAAAG
FOXP1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	35	49	+	14.5493	6.74e-06	0.341	ACAGTGAAAACAAAG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	66	80	-	14.5493	6.74e-06	0.341	ACAGTGAAAACAAAG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	97	111	+	14.5493	6.74e-06	0.341	ACAGTGAAAACAAAG
Rarb	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	54	69	+	5.2069	6.74e-06	0.742	AGAGCTCAAGAGGGCA
Rarb	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	46	61	-	5.2069	6.74e-06	0.742	AGAGCTCAAGAGGGCA
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	68	+	14.8448	6.74e-06	0.308	AGTTTCCACAGAAAC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	68	+	14.8448	6.74e-06	0.308	AGTTTCCACAGAAAC
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	10	27	-	-4.03947	6.75e-06	0.0197	GGAGCGAGGGGAGCAGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	88	105	+	-4.03947	6.75e-06	0.0197	GGAGCGAGGGGAGCAGGG
IRF2	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	8	25	+	11.7615	6.75e-06	0.31	TGAAAACGAAAGAAAATC
IRF2	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	79	96	+	11.7615	6.75e-06	0.31	TGAAAACGAAAGAAAATC
IRF2	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	19	36	-	11.7615	6.75e-06	0.31	TGAAAACGAAAGAAAATC
IRF2	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	90	107	-	11.7615	6.75e-06	0.31	TGAAAACGAAAGAAAATC
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	45	58	+	12.617	6.75e-06	0.0891	GCCACCCCGTGGCG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	25	45	+	13.7959	6.75e-06	0.00501	GGTGGCGGGGGGCGGTGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	25	45	+	13.7959	6.75e-06	0.00501	GGTGGCGGGGGGCGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	8	28	-	13.7959	6.75e-06	0.00501	AGAGGGGAGAGGGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	8	28	-	13.7959	6.75e-06	0.00501	AGAGGGGAGAGGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	14	34	-	13.7959	6.75e-06	0.00501	GGAGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	37	57	+	13.7959	6.75e-06	0.00501	GGAGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	37	57	+	13.7959	6.75e-06	0.00501	TGGGGCGGGGGTGGGGAGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	81	101	-	13.7959	6.75e-06	0.00501	GAGGGAAGGGAAGGAAGTAAG
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	+	13.4909	6.76e-06	0.215	TCTAAATATAGC
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	-	13.4909	6.76e-06	0.215	TCTAAATATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	-	13.4909	6.76e-06	0.215	TCTAAATATAGC
NRF1	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	4	14	-	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	16	26	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	16	26	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	16	26	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	16	26	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	68	78	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	60	70	-	14.8	6.76e-06	0.00483	GCCCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	60	70	-	14.8	6.76e-06	0.00483	GCCCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	60	70	-	14.8	6.76e-06	0.00483	GCCCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	60	70	-	14.8	6.76e-06	0.00483	GCCCCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	60	70	-	14.8	6.76e-06	0.00483	GCCCCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	78	88	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	78	88	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	77	87	-	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	77	87	-	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	89	99	-	14.8	6.76e-06	0.00483	CCGCCTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	101	111	+	14.8	6.76e-06	0.00483	CCGCCTGCGCC
SP4	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	28	44	-	11.3455	6.76e-06	0.00844	CTCGCCCCGCCCCAAGC
USF1	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	82	92	-	14.6531	6.76e-06	0.0628	CGCATGTGACC
USF1	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	23	33	+	14.6531	6.76e-06	0.0628	CGCATGTGACC
USF1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	96	106	+	14.6531	6.76e-06	0.0628	GCCAGGTGACC
CTCF	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	7	25	+	13.541	6.76e-06	0.0569	GGCGCAGCAGAGGGCGGCC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	90	108	-	13.541	6.76e-06	0.0569	GGCGCAGCAGAGGGCGGCC
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	90	108	-	13.541	6.76e-06	0.0569	GGCGCAGCAGAGGGCGGCC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	96	114	-	13.541	6.76e-06	0.0569	CCGCCACCAGAAAGCACTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	96	114	-	13.541	6.76e-06	0.0569	CCGCCACCAGAAAGCACTG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	42	56	-	14.3818	6.76e-06	0.22	AGGAAGAGAAAGGAA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	42	56	-	14.3818	6.76e-06	0.22	AGGAAGAGAAAGGAA
ETV2	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	37	47	+	15.0656	6.76e-06	0.118	AACCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	78	-	15.0656	6.76e-06	0.118	AACCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	78	-	15.0656	6.76e-06	0.118	AACCGGAAACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	28	41	+	14.4423	6.77e-06	0.00595	GCCCAGCCCACGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	28	41	+	14.4423	6.77e-06	0.00595	GCCCAGCCCACGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	16	29	-	14.4423	6.77e-06	0.00595	CCGCCGCCCCTTCC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	32	-	14.7869	6.77e-06	0.0539	GGCCCCGAGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	95	+	14.7869	6.77e-06	0.0539	GGCCCCGAGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	95	+	14.7869	6.77e-06	0.0539	GGCCCCGAGGGGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	14	27	-	14.0862	6.77e-06	0.0148	GGACACACCCACCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	14	27	-	14.0862	6.77e-06	0.0148	GGACACACCCACCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	17	30	-	14.0862	6.77e-06	0.0148	GGCCCCGCCCTCTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	17	30	-	14.0862	6.77e-06	0.0148	GGCCCCGCCCTCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	17	30	-	14.0862	6.77e-06	0.0148	GGCCCCGCCCTCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	17	30	-	14.0862	6.77e-06	0.0148	GGCCCCGCCCTCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	17	30	-	14.0862	6.77e-06	0.0148	GGCCCCGCCCTCTT
KLF14	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	55	68	+	14.0862	6.77e-06	0.0148	GACCGCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	47	60	-	14.0862	6.77e-06	0.0148	GACCGCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	47	60	-	14.0862	6.77e-06	0.0148	GACCGCGCCCCCAC
ELK3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	14.2069	6.77e-06	0.0475	GCCGGAAGTT
Myc	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	20	29	+	14.4364	6.77e-06	0.189	CCATGTGCCT
SREBF1	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	36	45	-	14.6829	6.77e-06	0.472	ATCACCCCAG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
ELK3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	14.2069	6.77e-06	0.0475	GCCGGAAGTT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	7	24	-	-4.05263	6.77e-06	0.0197	GGGAGAGGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	7	24	-	-4.05263	6.77e-06	0.0197	GGGAGAGGGGAGGGAGGG
JUN	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	29	41	+	14.9184	6.77e-06	0.297	GCGATGAGGTAAT
E2F4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	56	66	+	15.0172	6.77e-06	0.0253	GGGCGGGAGCC
E2F4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	49	59	-	15.0172	6.77e-06	0.0253	GGGCGGGAGCC
Zfx	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	43	56	+	14.7273	6.78e-06	0.017	AGGGGCCGGGCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	59	72	-	14.7273	6.78e-06	0.017	AGGGGCCGGGCCTC
SP2	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	3	17	-	14.5	6.78e-06	0.00333	TCTCCGCCTCCACCC
SP2	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	98	112	+	14.5	6.78e-06	0.00333	TCTCCGCCTCCACCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	11	21	+	14.7273	6.78e-06	0.0344	CGCCACGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	11	21	+	14.7273	6.78e-06	0.0344	CGCCACGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	11	21	+	14.7273	6.78e-06	0.0344	CGCCACGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	26	36	+	14.7273	6.78e-06	0.0344	CGCCACGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	26	36	+	14.7273	6.78e-06	0.0344	CGCCACGCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	101	113	+	14.5246	6.78e-06	0.326	TTGGCTGCCACCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	91	105	+	14.2121	6.79e-06	0.152	ACAGGTGAGTCAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	91	105	+	14.2121	6.79e-06	0.152	ACAGGTGAGTCAGCA
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	15.3654	6.79e-06	1	AACATATGCT
OLIG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	15.3654	6.79e-06	1	AACATATGCT
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	15.3654	6.79e-06	1	AACATATGCT
ESR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	12	28	-	8.59091	6.79e-06	0.296	CGGGTCGCGCTGCCCCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	47	61	+	13.3611	6.79e-06	0.207	CTATAAAAGACCTGG
TBP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	47	61	+	13.3611	6.79e-06	0.207	CTATAAAAGACCTGG
TBP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	51	65	+	13.3611	6.79e-06	0.207	CTATAAAAAGGCCTT
TBP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	51	65	+	13.3611	6.79e-06	0.207	CTATAAAAAGGCCTT
TBP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	51	65	+	13.3611	6.79e-06	0.207	CTATAAAAAGGCCTT
TBP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	51	65	+	13.3611	6.79e-06	0.207	CTATAAAAAGGCCTT
TBP	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	54	68	-	13.3611	6.79e-06	0.207	CTATAAAAGACCTGG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	45	57	-	10.2653	6.79e-06	0.233	TGGGGGAGCCCCT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	68	80	-	10.2653	6.79e-06	0.233	TGGGGGAGCCCCT
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	47	59	+	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	47	59	+	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	47	59	+	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	47	59	+	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	47	59	+	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
NR2F1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	56	68	-	14.6327	6.8e-06	0.326	CGAAGGTCACAGG
MEF2D	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	+	13.9273	6.8e-06	0.304	TCTAAATATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	-	13.9273	6.8e-06	0.304	TCTAAATATAGC
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	-	13.9273	6.8e-06	0.304	TCTAAATATAGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	54	66	+	14.7541	6.8e-06	0.0457	TCCCTCCGGGGCA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	+	14.2364	6.8e-06	0.0397	AGCCTCCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	-	14.2364	6.8e-06	0.0397	AGCCTCCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	-	14.2364	6.8e-06	0.0397	AGCCTCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	-	14.2364	6.8e-06	0.0397	AGCCTCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	-	14.2364	6.8e-06	0.0397	AGCCTCCGGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	14.1549	6.8e-06	0.0449	CCCGGAAGTG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	18	31	+	14.1143	6.8e-06	0.0782	GGGTGACGTAATCT
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	18	31	+	14.1143	6.8e-06	0.0782	GGGTGACGTAATCT
ESR2	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	33	47	+	14.3077	6.81e-06	0.365	GGGTCAGCCAGGCTC
NFYB	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	40	54	-	14.7885	6.81e-06	0.067	CGCCTGGCCAATGAG
SP1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	11	21	-	14.6923	6.82e-06	0.00406	CCCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	18	28	-	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	18	28	-	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	18	28	-	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	18	28	-	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	34	44	-	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	37	47	-	14.6923	6.82e-06	0.00406	CCCCCGCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	71	81	+	14.6923	6.82e-06	0.00406	GCTCCTCCCCT
PLAG1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	9	22	+	12.0918	6.82e-06	0.0605	GGGGCCAGAAGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	93	106	-	12.0918	6.82e-06	0.0605	GGGGCCAGAAGGGG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	42	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	42	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	47	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	65	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	71	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	71	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	81	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	81	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	81	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	81	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	85	+	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	28	38	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	28	38	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	28	38	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	30	40	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	33	43	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	33	43	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	50	60	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	68	78	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	68	78	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	73	83	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	74	84	-	14.5517	6.83e-06	0.00819	GCCCCACCCAC
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	4	18	+	14.5918	6.83e-06	0.511	GACTTGTTTACACTA
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	4	18	+	14.5918	6.83e-06	0.511	GACTTGTTTACACTA
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	61	75	-	14.5918	6.83e-06	0.511	GACTTGTTTACACTA
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	61	75	-	14.5918	6.83e-06	0.511	GACTTGTTTACACTA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	6	19	-	14.069	6.83e-06	0.0148	CGCCCCGCCCCTCC
PKNOX1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	2	13	-	10.3469	6.84e-06	0.428	TGACATGTGTGA
PKNOX1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	102	113	+	10.3469	6.84e-06	0.428	TGACATGTGTGA
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	40	52	-	14.1212	6.84e-06	0.196	AGGGGTTCCCCCG
ZNF263	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	2	22	+	13.7755	6.84e-06	0.00505	GGAGCCTGGTGGAGAGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	11	31	+	13.7755	6.84e-06	0.00505	AGAGCAAGCGGCGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	11	31	+	13.7755	6.84e-06	0.00505	AGAGCAAGCGGCGGAGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	19	39	+	13.7755	6.84e-06	0.00505	GGAGGAGCGTGAGGCGGGGCT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	23	43	-	13.7755	6.84e-06	0.00505	AAGGAAAGGGGGGGGGGAAAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	93	113	-	13.7755	6.84e-06	0.00505	GGAGCCTGGTGGAGAGGAGAG
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	41	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	41	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	41	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	76	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	76	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	76	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	76	+	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	70	81	-	14.3158	6.84e-06	0.0134	GCCCCGCCCCGT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	2	15	-	14.4231	6.84e-06	0.00595	CTTCCTCCCACGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	17	30	+	14.4231	6.84e-06	0.00595	CTTCCTCCCACGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	17	30	+	14.4231	6.84e-06	0.00595	CTTCCTCCCACGCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	40	+	14.4231	6.84e-06	0.00595	CCTCCGCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	35	48	+	14.4231	6.84e-06	0.00595	AGCCCGCCCCCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	54	67	+	14.4231	6.84e-06	0.00595	GCTCCTCCCACGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	54	67	+	14.4231	6.84e-06	0.00595	GCTCCTCCCACGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	54	67	+	14.4231	6.84e-06	0.00595	GCTCCTCCCACGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	54	67	+	14.4231	6.84e-06	0.00595	GCTCCTCCCACGGC
ERG	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	14.3818	6.85e-06	0.0754	ACCGGAAATA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	48	58	-	14.6735	6.85e-06	0.0993	AGCAGCTGCCG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	48	58	-	14.6735	6.85e-06	0.0993	AGCAGCTGCCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	96	106	-	14.6735	6.85e-06	0.0993	AGCAGCTGCCG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	96	106	-	14.6735	6.85e-06	0.0993	AGCAGCTGCCG
JUN	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	2	14	-	14.898	6.85e-06	0.297	CTAATGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	2	14	-	14.898	6.85e-06	0.297	CTAATGACGTCAT
JUN	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	28	40	+	14.898	6.85e-06	0.297	CTAATGACGTCAT
JUN	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	75	87	-	14.898	6.85e-06	0.297	CTAATGACGTCAT
JUN	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	101	113	+	14.898	6.85e-06	0.297	CTAATGACGTCAT
Klf4	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	57	66	-	14.6633	6.85e-06	0.00656	TGGGTGGGGT
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	9	26	+	14.7455	6.85e-06	0.915	CCTATCAGTATACGGCAG
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	47	64	-	14.7455	6.85e-06	0.915	CCTATCAGTATACGGCAG
SPIC	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	38	51	+	14.2394	6.86e-06	0.102	AAACAGCGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	77	-	14.2394	6.86e-06	0.102	AAACAGCGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	77	-	14.2394	6.86e-06	0.102	AAACAGCGGAAGTC
ELF4	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	56	67	+	14.1803	6.86e-06	0.0516	ATCCAGGAAGTG
ELF4	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	48	59	-	14.1803	6.86e-06	0.0516	ATCCAGGAAGTG
HES7	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	70	-	11.1379	6.86e-06	0.171	AGCCACGTGCCT
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	42	55	+	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	42	55	+	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	42	55	+	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	74	87	+	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	28	41	-	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	60	73	-	14.7121	6.86e-06	0.017	GGCCCTGAGGCCTG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	47	61	-	14.5172	6.86e-06	0.232	AAGCTGAAGGTCAGA
SP3	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	57	67	-	14.0569	6.86e-06	0.00917	TCCACACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	69	79	-	14.0569	6.86e-06	0.00917	TCCACACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	69	79	-	14.0569	6.86e-06	0.00917	TCCACACCCCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	+	14.6379	6.87e-06	0.049	GCCCCGGGGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	-	14.6379	6.87e-06	0.049	GCCCCGGGGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	-	14.6379	6.87e-06	0.049	GCCCCGGGGGGCA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	+	14.6379	6.87e-06	0.049	GCCCCGGGGGGCA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	-	14.6379	6.87e-06	0.049	GCCCCGGGGGGCA
EHF	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	23	34	+	14.5082	6.87e-06	0.0768	GAGCCGGAAGTT
EHF	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	92	-	14.5082	6.87e-06	0.0768	GAGCCGGAAGTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	5	19	-	14.4828	6.88e-06	0.00336	TTCCCTCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	5	19	-	14.4828	6.88e-06	0.00336	TTCCCTCCCTCCCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	8	22	-	14.4828	6.88e-06	0.00336	CTCCCGCCCCTGCTT
SP2	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	17	31	-	14.4828	6.88e-06	0.00336	ACCCCGCCCTCCCAG
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	22	36	-	14.4828	6.88e-06	0.00336	TCCCCACCCCCAGCC
SP2	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	98	+	14.4828	6.88e-06	0.00336	ACCCCGCCCTCCCAG
SP2	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	107	+	14.4828	6.88e-06	0.00336	CTCCCGCCCCTGCTT
RARA::RXRA	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	50	-	14.1429	6.88e-06	0.338	GGGTCAAGGGGCGGGCG
RARA::RXRA	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	65	81	+	14.1429	6.88e-06	0.338	GGGTCAAGGGGCGGGCG
STAT1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	13	23	-	15.2364	6.88e-06	0.156	TTTCCGGGAAC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	92	102	+	15.2364	6.88e-06	0.156	TTTCCGGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	92	102	+	15.2364	6.88e-06	0.156	TTTCCGGGAAC
NFKB2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	16	28	-	14.1061	6.88e-06	0.196	CGGGATTTCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	16	29	-	14.0517	6.88e-06	0.0149	TGCCGCGCCCCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	16	29	-	14.0517	6.88e-06	0.0149	TGCCGCGCCCCCAA
HES5	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	70	+	11.6379	6.89e-06	0.202	AGGCACGTGGCT
Creb5	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	36	-	14.6727	6.89e-06	0.0992	GATGACGTCAGC
Creb5	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	40	-	14.6727	6.89e-06	0.0992	GATGACGTCAGC
Creb5	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	88	-	14.6727	6.89e-06	0.0992	GATGACGTCAGC
Creb5	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	38	+	14.6727	6.89e-06	0.0992	GATGACGTCAGC
SP1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	14	24	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	28	38	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	41	51	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	41	51	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	41	51	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	41	51	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	31	41	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	52	62	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	56	66	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	57	67	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	57	67	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	48	58	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	49	59	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	53	63	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	53	63	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	53	63	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	53	63	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	53	63	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	77	87	+	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	91	101	-	14.6346	6.9e-06	0.00406	CGCCCGCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	56	67	-	14.3026	6.9e-06	0.0134	GCCCCACCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	61	72	-	14.3026	6.9e-06	0.0134	GCCCCACCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	61	72	-	14.3026	6.9e-06	0.0134	GCCCCACCCCCT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	18	33	+	14.1455	6.9e-06	0.03	GCACGCGCACGCACAC
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	14	28	+	14.0429	6.9e-06	0.0745	GGGGGGCGGGGGGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	63	77	-	14.0429	6.9e-06	0.0745	GGGGGGCGGGGGGCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	96	109	-	12.5532	6.9e-06	0.0891	GACGCCCTGCAGTG
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	92	102	+	15	6.9e-06	0.728	TAACTGAATCA
Rfx1	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	29	42	+	14.2414	6.9e-06	0.0712	ATTGCCCGGGCAAC
Rfx1	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	73	86	-	14.2414	6.9e-06	0.0712	ATTGCCCGGGCAAC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	40	57	+	-4.10526	6.9e-06	0.0198	GGAAGGAGGGAGGCAGCG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	58	75	-	-4.10526	6.9e-06	0.0198	GGAAGGAGGGAGGCAGCG
DUXA	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	1	13	-	14.3387	6.91e-06	1	ATGACTTAATCAC
DUXA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	3	15	-	14.3387	6.91e-06	1	ATGACTTAATCAC
DUXA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	3	15	-	14.3387	6.91e-06	1	ATGACTTAATCAC
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	43	53	+	14.9828	6.91e-06	0.0253	TGGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	43	53	+	14.9828	6.91e-06	0.0253	TGGCGGGAGAG
NFYB	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	48	62	+	14.7692	6.91e-06	0.067	CCCTGAGCCAATCAA
NFYB	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	4	18	-	14.7692	6.91e-06	0.067	CCCTGAGCCAATCAA
NFYB	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	53	67	-	14.7692	6.91e-06	0.067	CCCTGAGCCAATCAA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	90	104	-	12.8276	6.92e-06	0.0251	TACCGCCGCCGCACT
RFX5	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	65	80	-	12.3276	6.92e-06	0.0647	CATTGTCATGGAAACC
RFX5	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	35	50	+	12.3276	6.92e-06	0.0647	CATTGTCATGGAAACC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	58	71	+	13.5574	6.92e-06	0.176	CCCCCCCCGCGCCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	9	29	+	13.7551	6.92e-06	0.00509	GGGGGTGGGGTGGAAAAGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	7	27	-	13.7551	6.92e-06	0.00509	GAGGGATGCGAGGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	33	53	-	13.7551	6.92e-06	0.00509	GGGGGTGGGGTGGAAAAGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	33	53	-	13.7551	6.92e-06	0.00509	GGGGGTGGGGTGGAAAAGGAA
ELF4	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	59	70	+	14.1148	6.92e-06	0.0516	AACCAGGAAGTT
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	24	35	-	13.8163	6.93e-06	0.0681	CCTGACGTCACT
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	57	+	13.8163	6.93e-06	0.0681	CCTGACGTCACT
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	58	69	-	13.8163	6.93e-06	0.0681	CCTGACGTCACT
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	91	+	13.8163	6.93e-06	0.0681	CCTGACGTCACT
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	9	23	-	14.1818	6.93e-06	0.152	CAAAATGACTCGGCC
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	14	28	-	14.1818	6.93e-06	0.152	CAAAATGACTCGGCC
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	87	101	+	14.1818	6.93e-06	0.152	CAAAATGACTCGGCC
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	92	106	+	14.1818	6.93e-06	0.152	CAAAATGACTCGGCC
EGR1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	42	55	-	14.4038	6.93e-06	0.006	CTCCCTCCCCCTTC
EGR1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	73	+	14.4038	6.93e-06	0.006	CTCCCTCCCCCTTC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	66	79	+	14.4038	6.93e-06	0.006	CTCCCTCCCCCTTC
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	50	64	-	14.303	6.93e-06	0.124	TCGCTTTCAGTTCCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	13.2727	6.94e-06	0.0575	ACCGGAAGCA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	13	28	-	10.6909	6.94e-06	0.153	GGGTTCAAAGCTCAGT
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	13	28	-	10.6909	6.94e-06	0.153	GGGTTCAAAGCTCAGT
Hnf4a	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	87	102	+	10.6909	6.94e-06	0.153	GGGTTCAAAGCTCAGT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	77	90	+	14.7885	6.95e-06	0.118	CAAGGATGACTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	77	90	+	14.7885	6.95e-06	0.118	CAAGGATGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	77	90	+	14.7885	6.95e-06	0.118	CAAGGATGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	77	90	+	14.7885	6.95e-06	0.118	CAAGGATGACTCAC
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	+	15.1489	6.95e-06	0.157	TATGAGTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	-	15.1489	6.95e-06	0.157	TATGAGTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	-	15.1489	6.95e-06	0.157	TATGAGTCATG
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	28	38	-	14.6818	6.95e-06	0.0344	AACCACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	28	38	-	14.6818	6.95e-06	0.0344	AACCACGCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	59	72	+	14.0345	6.95e-06	0.0149	CACCCCGCCCCCAT
SP2	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	74	+	14.4655	6.95e-06	0.0034	GCCCTGCCCCCAGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	-	14.1455	6.95e-06	0.0893	AGCCCGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	-	14.1455	6.95e-06	0.0893	AGCCCGGGGGCG
SP8	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	28	39	-	14.2895	6.95e-06	0.0134	GCACCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	33	44	-	14.2895	6.95e-06	0.0134	GCACCGCCCCCT
POU4F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	1	14	-	14.0787	6.96e-06	0.724	ATTAATTATTCATG
POU4F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	1	14	-	14.0787	6.96e-06	0.724	ATTAATTATTCATG
POU4F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	1	14	-	14.0787	6.96e-06	0.724	ATTAATTATTCATG
POU4F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	1	14	-	14.0787	6.96e-06	0.724	ATTAATTATTCATG
EHF	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	73	84	+	14.4754	6.96e-06	0.0768	GATCCGGAAGTG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	22	32	+	14.5345	6.96e-06	0.00825	TCCACGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	22	32	+	14.5345	6.96e-06	0.00825	TCCACGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	22	32	+	14.5345	6.96e-06	0.00825	TCCACGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	22	32	+	14.5345	6.96e-06	0.00825	TCCACGCCCAC
TEF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	+	15.1273	6.97e-06	1	CATTACGTAATT
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	+	15.1273	6.97e-06	1	CGTTACGTAATT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	1	15	-	14.2364	6.97e-06	0.0974	CGCCTCCCGCCGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	24	+	13.4	6.97e-06	0.0867	CCCCCCCCACAGTGT
Spz1	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	32	42	+	14.1182	6.98e-06	0.423	AGGGAAACAGC
Spz1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	73	83	-	14.1182	6.98e-06	0.423	AGGGAAACAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	73	83	-	14.1182	6.98e-06	0.423	AGGGAAACAGC
FOSL2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	29	39	-	15.1273	6.98e-06	0.0939	AGGTGACTCAG
ZNF143	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	77	92	+	9.89655	6.98e-06	0.231	TTCCCGTGATGCCCCA
ZNF143	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	23	38	-	9.89655	6.98e-06	0.231	TTCCCGTGATGCCCCA
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	23	38	-	9.89655	6.98e-06	0.231	TTCCCGTGATGCCCCA
Myog	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	46	+	14.6735	6.99e-06	0.0679	GGCAGCTGCCC
Myog	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	36	46	-	14.6735	6.99e-06	0.0679	GGCAGCTGCCC
Myog	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	79	+	14.6735	6.99e-06	0.0679	GGCAGCTGCCC
ELK4	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	53	-	14.5455	7e-06	0.0284	CTGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	62	72	+	14.5455	7e-06	0.0284	CTGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	62	72	+	14.5455	7e-06	0.0284	CTGCTTCCGGT
ELK4	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	76	-	14.5455	7e-06	0.0284	CTGCTTCCGGT
CTCF	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	15	33	-	13.4754	7e-06	0.0571	GAGCCTGCAGGGGGTGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	95	113	+	13.4754	7e-06	0.0571	TGACCAGCTGGGGGTGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	95	113	+	13.4754	7e-06	0.0571	TGACCAGCTGGGGGTGGGG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	19	33	+	13.6557	7e-06	0.0286	CACCACGCCCAGCTG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	61	75	-	13.6557	7e-06	0.0286	GGCCCCACCCATATC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	+	13.9898	7e-06	0.0857	CGCCCCCAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	+	13.9898	7e-06	0.0857	CGCCCCCAGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	+	13.9898	7e-06	0.0857	CGCCCCCAGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	+	13.9898	7e-06	0.0857	CGCCCCCAGGCG
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	33	-	8.81818	7e-06	0.213	GGGTGCAAAGGTGA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	33	-	8.81818	7e-06	0.213	GGGTGCAAAGGTGA
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	56	66	+	14.0325	7e-06	0.00932	AACACGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	33	43	-	14.0325	7e-06	0.00932	AACACGCCCCC
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	20	30	+	14.449	7.01e-06	0.219	AATTCCCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	20	30	+	14.449	7.01e-06	0.219	AATTCCCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	56	66	+	14.449	7.01e-06	0.219	AATTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	56	66	+	14.449	7.01e-06	0.219	AATTCCCAGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	52	72	+	13.7347	7.01e-06	0.00515	AGAGGAGAGGCAACATGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	52	72	+	13.7347	7.01e-06	0.00515	AGAGGAGAGGCAACATGAGGA
ELF4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	54	65	+	14.082	7.01e-06	0.0516	AAACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	61	-	14.082	7.01e-06	0.0516	AAACCGGAAGCA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	61	-	14.082	7.01e-06	0.0516	AAACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	61	-	14.082	7.01e-06	0.0516	AAACCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	61	-	14.082	7.01e-06	0.0516	AAACCGGAAGCA
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	19	29	+	14.6393	7.01e-06	0.0239	GCGGAAGTGCG
EGR3	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	30	44	-	12.7931	7.01e-06	0.0251	CACCGCCTACGCGGT
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	95	105	+	14.4388	7.01e-06	0.169	GTCCACGTGGT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	4	18	+	14.4394	7.02e-06	0.0385	CTCCCGCGGGAACCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	4	18	+	14.4394	7.02e-06	0.0385	CTCCCGCGGGAACCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	38	52	+	14.4394	7.02e-06	0.0385	TTCCCGCGAGGCCCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	38	52	+	14.4394	7.02e-06	0.0385	TTCCCGCGAGGCCCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	21	34	-	14.3846	7.02e-06	0.00605	TCCCCACCCCCTGA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	21	34	-	14.3846	7.02e-06	0.00605	TCCCCACCCCCTGA
EGR1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	23	36	-	14.3846	7.02e-06	0.00605	CCCCCACCCACATC
EGR1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	92	+	14.3846	7.02e-06	0.00605	CCCCCACCCACATC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	57	71	+	14.4483	7.02e-06	0.00343	GGCCCGCCCTCTACA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	57	71	+	14.4483	7.02e-06	0.00343	GGCCCGCCCTCTACA
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	+	14.4032	7.02e-06	0.314	TCTAAATATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	-	14.4032	7.02e-06	0.314	TCTAAATATAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	-	14.4032	7.02e-06	0.314	TCTAAATATAGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	27	45	+	14.1935	7.02e-06	0.132	GAAGTCAATGAAGCGGGTC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	62	80	+	14.1935	7.02e-06	0.132	GAAGTCAATGAAGCGGGTC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	62	80	+	14.1935	7.02e-06	0.132	GAAGTCAATGAAGCGGGTC
SRF	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	27	42	-	11.8033	7.02e-06	0.264	CCCCCATATAAGGCAG
SRF	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	11	26	+	11.8033	7.02e-06	0.264	CCCCCATATAAGGCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	72	85	-	14.0172	7.02e-06	0.0149	GGTCCCGCCCCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	72	85	-	14.0172	7.02e-06	0.0149	GGTCCCGCCCCCAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	72	85	-	14.0172	7.02e-06	0.0149	GGTCCCGCCCCCAA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	72	85	-	14.0172	7.02e-06	0.0149	GGTCCCGCCCCCAA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	-	15.0909	7.02e-06	0.0823	AATGACTCATG
INSM1	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	73	84	-	14.7143	7.02e-06	0.11	GGTCTGGGGTCA
ZIC1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	96	109	+	12.5106	7.02e-06	0.0891	CGCCCCATGCTGTG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	6	19	-	12.5106	7.02e-06	0.0891	CGCCCCATGCTGTG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	-	14.1273	7.03e-06	0.0548	TCCCCGAGGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	+	14.2182	7.03e-06	0.0397	TGCCCGAGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	-	14.2182	7.03e-06	0.0397	TGCCCGAGGCG
Sox6	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	36	45	+	14.6286	7.03e-06	0.518	CCATTGTTCC
Sox6	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	78	87	+	14.6286	7.03e-06	0.518	CCATTGTTCC
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	82	92	+	14.8	7.04e-06	0.19	AGCCGGATGTT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	82	92	+	14.8	7.04e-06	0.19	AGCCGGATGTT
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	75	-	13.5636	7.05e-06	0.0953	AAGCGGAAGTA
USF2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	29	-	14.8367	7.05e-06	0.0487	GACACGTGACC
USF2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	49	-	14.8367	7.05e-06	0.0487	GACACGTGACC
USF2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	24	+	14.8367	7.05e-06	0.0487	GCCACGTGACA
USF2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	76	+	14.8367	7.05e-06	0.0487	GACACGTGACC
USF2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	96	+	14.8367	7.05e-06	0.0487	GACACGTGACC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	63	76	-	12.0102	7.05e-06	0.0605	GAGGGCTACTGGGA
EHF	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	66	77	+	14.459	7.05e-06	0.0768	CGCCCGGAAGTA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	8	22	+	12.7759	7.06e-06	0.0251	CACCTCCCCCGCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	8	22	+	12.7759	7.06e-06	0.0251	CACCTCCCCCGCGCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	8	22	+	12.7759	7.06e-06	0.0251	CACCTCCCCCGCGCT
POU4F1	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	41	54	-	14.063	7.07e-06	0.724	ATACATATTTAATT
SPI1	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	59	72	-	10.6545	7.07e-06	0.105	CAAAAGCGGAACCT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	92	105	+	14.7692	7.07e-06	0.118	AAGCAGTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	10	23	-	14.7692	7.07e-06	0.118	AAGCAGTGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	10	23	-	14.7692	7.07e-06	0.118	AAGCAGTGACTCAC
ETV1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.9636	7.07e-06	0.0567	GCCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.9636	7.07e-06	0.0567	GCCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.9636	7.07e-06	0.0567	GCCGGAAGTA
ETV1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.9636	7.07e-06	0.0567	GCCGGAAGTA
ETV1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.9636	7.07e-06	0.0567	GCCGGAAGTA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	78	90	-	13.7931	7.07e-06	0.105	GAGGCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	78	90	-	13.7931	7.07e-06	0.105	GAGGCGGAAGTGA
ELF3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	25	37	+	13.7931	7.07e-06	0.105	GAGGCGGAAGTGA
ELF3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	99	111	+	13.7931	7.07e-06	0.105	GAGGCGGAAGTGA
Creb5	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	48	-	14.6182	7.08e-06	0.0992	TCTGACGTCACC
Creb5	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	78	+	14.6182	7.08e-06	0.0992	TCTGACGTCACC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	30	+	14.5	7.08e-06	0.00825	ACCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	20	30	+	14.5	7.08e-06	0.00825	ACCACCCCCCC
CREB3	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	29	42	-	14.2571	7.08e-06	0.196	CCGCCACGTGACCG
CREB3	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	44	57	-	14.2571	7.08e-06	0.196	GTGCCACGTGAGCG
CREB3	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	99	112	-	14.2571	7.08e-06	0.196	CCGCCACGTGACCG
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	3	16	+	14.2571	7.08e-06	0.196	CCGCCACGTGACCG
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	3	16	+	14.2571	7.08e-06	0.196	CCGCCACGTGACCG
CREB3	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	73	86	+	14.2571	7.08e-06	0.196	CCGCCACGTGACCG
GSX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.4603	7.08e-06	1	CCTAATTAGA
HOXC10	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	2	11	+	13.6727	7.08e-06	1	GTCATAAAAA
HOXC10	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	77	86	+	13.6727	7.08e-06	1	GTCATAAAAA
HOXC10	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	77	86	+	13.6727	7.08e-06	1	GTCATAAAAA
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	61	75	-	14.4242	7.09e-06	0.0385	GTCTCGCGGGGACGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	61	75	-	14.4242	7.09e-06	0.0385	GTCTCGCGGGGACGC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	31	40	+	13.9899	7.09e-06	0.16	GGGAATTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	31	40	+	13.9899	7.09e-06	0.16	GGGAATTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	59	68	+	13.9899	7.09e-06	0.16	GGGAATTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	59	68	+	13.9899	7.09e-06	0.16	GGGAATTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	105	114	-	13.9899	7.09e-06	0.16	GGGAATTTCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	19	32	+	14	7.09e-06	0.0149	CGCCGCGCCCCCAT
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	19	32	+	14	7.09e-06	0.0149	CGCCGCGCCCCCAT
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	62	75	-	14	7.09e-06	0.0149	CGCCGCGCCCCCAT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	62	75	-	14	7.09e-06	0.0149	CGCCGCGCCCCCAT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	21	+	14.551	7.09e-06	0.00545	GCCACGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	21	+	14.551	7.09e-06	0.00545	GCCACGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	12	21	+	14.551	7.09e-06	0.00545	GCCACGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	27	36	+	14.551	7.09e-06	0.00545	GCCACGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	36	+	14.551	7.09e-06	0.00545	GCCACGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	68	77	+	14.551	7.09e-06	0.00545	GCCACGCCCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	+	14.3077	7.09e-06	0.0588	CGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	-	14.3077	7.09e-06	0.0588	CGCCTCGGGCA
Nr5a2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	43	57	-	14.4655	7.09e-06	0.232	TCTCTCAAGGTCAGC
Nr5a2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	58	72	+	14.4655	7.09e-06	0.232	TCTCTCAAGGTCAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	43	63	+	13.7143	7.1e-06	0.0052	AGGGCAGGGCAGAGGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	54	74	-	13.7143	7.1e-06	0.0052	AGGGCAGGGCAGAGGAGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	71	88	-	-4.18421	7.1e-06	0.0198	CAAAGAAAGGAAGCCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	71	88	-	-4.18421	7.1e-06	0.0198	CAAAGAAAGGAAGCCGGG
KLF13	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	58	75	-	11.6034	7.1e-06	0.0871	GAGCCACGCCCACGCGCG
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	99	109	-	14.7414	7.1e-06	0.347	CAATCACTGCC
TGIF2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	+	13.1651	7.1e-06	0.46	TGACATGTGTCC
TGIF2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	-	13.1651	7.1e-06	0.46	TGACATGTGTCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	10	20	+	14.6182	7.1e-06	0.00505	ACGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	10	20	+	14.6182	7.1e-06	0.00505	ACGCATGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	23	33	-	14.6182	7.1e-06	0.00505	ACGCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	23	33	-	14.6182	7.1e-06	0.00505	ACGCATGCGCC
Dmbx1	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	30	46	+	14.3553	7.1e-06	1	TGAATGGGATTAATGCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	54	65	+	14.6818	7.1e-06	0.0935	TAGGGTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	54	65	+	14.6818	7.1e-06	0.0935	TAGGGTCCGCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	88	102	-	12.7586	7.11e-06	0.0251	CTCCGCCTCCGCGTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	88	102	-	12.7586	7.11e-06	0.0251	CTCCGCCTCCGCGTG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	88	102	-	12.7586	7.11e-06	0.0251	CTCCGCCTCCGCGTG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	88	102	-	12.7586	7.11e-06	0.0251	CTCCGCCTCCGCGTG
Nr2f6	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	38	-	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
Nr2f6	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	77	90	+	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	77	90	+	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	77	90	+	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
Nr2f6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	77	90	+	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	77	90	+	13.3939	7.11e-06	0.176	AGGGTCACAGGCCA
ZIC3	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	16	30	-	13.3571	7.11e-06	0.0867	CGCCCCCTGCCGAGG
IRF7	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	24	37	-	13.8387	7.11e-06	0.341	ATGAAAACGAAAGA
IRF7	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	95	108	-	13.8387	7.11e-06	0.341	ATGAAAACGAAAGA
IRF7	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	7	20	+	13.8387	7.11e-06	0.341	ATGAAAACGAAAGA
IRF7	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	78	91	+	13.8387	7.11e-06	0.341	ATGAAAACGAAAGA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	15	31	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	15	31	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	15	31	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	15	31	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	15	31	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	8	24	-	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	8	24	-	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	8	24	-	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	8	24	-	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	91	107	+	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
SP4	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	84	100	-	11.2	7.11e-06	0.00871	GCAGCCCCGCCCCAAGC
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	56	66	+	14.3788	7.11e-06	0.269	GTCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	56	66	+	14.3788	7.11e-06	0.269	GTCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.1.0	90	100	+	14.3788	7.11e-06	0.269	GTCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.0.0	90	100	+	14.3788	7.11e-06	0.269	GTCCGCCATCT
SP2	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	22	36	+	14.431	7.11e-06	0.00345	CTCCCTCCTCCCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	49	+	14.431	7.11e-06	0.00345	GCCCCGCCCACAGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	49	+	14.431	7.11e-06	0.00345	GCCCCGCCCACAGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	32	46	-	14.431	7.11e-06	0.00345	CCCCCACCCCTACCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	32	46	-	14.431	7.11e-06	0.00345	CCCCCACCCCTACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	32	46	-	14.431	7.11e-06	0.00345	CCCCCACCCCTACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	32	46	-	14.431	7.11e-06	0.00345	CCCCCACCCCTACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	32	46	-	14.431	7.11e-06	0.00345	CCCCCACCCCTACCC
SP2	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	52	66	+	14.431	7.11e-06	0.00345	GCTCCGCCCTCTGCA
SP2	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	49	63	-	14.431	7.11e-06	0.00345	GCTCCGCCCTCTGCA
SP2	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	70	84	-	14.431	7.11e-06	0.00345	TCCCCTCCTCCCACC
SP2	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	79	93	-	14.431	7.11e-06	0.00345	CTCCCTCCTCCCCCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	+	14.6721	7.11e-06	0.0457	TGCCCCCCGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	+	14.6721	7.11e-06	0.0457	TGCCCCCCGGGGC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	-	14.6721	7.11e-06	0.0457	TGCCCCCCGGGGC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	+	14.6721	7.11e-06	0.0457	TGCCCCCCGGGGC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	-	14.6721	7.11e-06	0.0457	TGCCCCCCGGGGC
JUNB	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	39	49	+	14.8367	7.11e-06	0.11	AGGTGAGTCAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	53	63	+	14.8367	7.11e-06	0.11	GAGTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	93	103	+	14.8367	7.11e-06	0.11	AGGTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	93	103	+	14.8367	7.11e-06	0.11	AGGTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	4	14	-	14.8367	7.11e-06	0.11	GAGTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	4	14	-	14.8367	7.11e-06	0.11	GAGTGAGTCAG
IRF8	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	7	20	+	7.61818	7.11e-06	0.32	ATGAAAACGAAAGA
IRF8	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	24	37	-	7.61818	7.11e-06	0.32	ATGAAAACGAAAGA
IRF8	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	78	91	+	7.61818	7.11e-06	0.32	ATGAAAACGAAAGA
IRF8	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	95	108	-	7.61818	7.11e-06	0.32	ATGAAAACGAAAGA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	3	15	+	14.0606	7.12e-06	0.196	TGGGGAAATCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	5	17	-	14.0606	7.12e-06	0.196	TGGGGAAATCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	5	17	-	14.0606	7.12e-06	0.196	TGGGGAAATCCCT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	38	50	-	14.0606	7.12e-06	0.196	TGGGATTTCCCCT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	45	57	-	14.0606	7.12e-06	0.196	TGGGGGAGCCCCT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	68	80	-	14.0606	7.12e-06	0.196	TGGGGGAGCCCCT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	11.2867	7.12e-06	0.0721	GCCACGTGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	11.2867	7.12e-06	0.0721	GCCACGTGCC
SP3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	81	+	14.0244	7.12e-06	0.00936	GCCCCGCCCAT
SP3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	34	44	-	14.0244	7.12e-06	0.00936	GCCCCGCCCAT
SP3	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	54	64	-	14.0244	7.12e-06	0.00936	GCCCCGCCCAT
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	11	22	-	13.98	7.12e-06	0.632	TGTATGCAAATG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	54	+	13.7551	7.12e-06	0.0681	CCTGACGTCATA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	54	+	13.7551	7.12e-06	0.0681	CCTGACGTCATA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	54	+	13.7551	7.12e-06	0.0681	CCTGACGTCATA
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	32	43	-	13.7551	7.12e-06	0.0681	CATGACATCATC
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	32	45	+	14.3654	7.12e-06	0.00614	GCCCAGCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	54	65	-	13.8871	7.13e-06	0.281	GCGCCCACCCAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	54	65	-	13.8871	7.13e-06	0.281	GCGCCCACCCAC
SP8	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	29	40	-	14.25	7.13e-06	0.0134	GCCCCGCCCAGT
SP8	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	86	+	14.25	7.13e-06	0.0134	GCCCCGCCCAGT
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	60	74	-	14.1364	7.13e-06	0.152	AGGGATGAGTGAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	97	111	-	14.1364	7.13e-06	0.152	AGGGATGAGTGAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	97	111	-	14.1364	7.13e-06	0.152	AGGGATGAGTGAGCA
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	41	61	+	13.871	7.13e-06	0.0935	ACCTCCTTTCCCTTTCGGATT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	75	95	+	13.871	7.13e-06	0.0935	ACCTCCTTTCCCTTTCGGATT
TFEB	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	14.2692	7.13e-06	0.0768	GGCACGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	14.2692	7.13e-06	0.0768	GGCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	14.4655	7.14e-06	0.188	CTCACGTGAT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	14.4655	7.14e-06	0.188	CTCACGTGAT
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	14.4545	7.14e-06	0.189	CTCACGTGAT
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	14.4545	7.14e-06	0.189	CTCACGTGAT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	14	-	13.7308	7.14e-06	0.331	CACACCTGCT
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	14	-	13.7308	7.14e-06	0.331	CACACCTGCT
TCF3	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	57	66	-	13.7308	7.14e-06	0.331	AACACCTGCA
TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	104	113	+	13.7308	7.14e-06	0.331	AACACCTGCA
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	104	113	+	13.7308	7.14e-06	0.331	AACACCTGCA
EGR4	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	36	51	+	14.0909	7.15e-06	0.03	CTCCTCCCCCGCGCTT
PAX9	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	68	84	+	9.34545	7.15e-06	0.456	CGTCATGCCTCAGTAGG
PAX9	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	73	89	+	9.34545	7.15e-06	0.456	CGTCATGCCTCAGTAGG
PAX9	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	26	42	-	9.34545	7.15e-06	0.456	CGTCATGCCTCAGTAGG
PAX9	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	31	47	-	9.34545	7.15e-06	0.456	CGTCATGCCTCAGTAGG
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	48	57	-	14.8776	7.15e-06	0.702	TGAAGGTCAA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	4	18	+	13.9857	7.15e-06	0.0745	GGGGGTTAAGGGGCG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	1	15	-	4.44286	7.15e-06	0.629	AGTGTCATGAGGTCA
EGR3	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	44	58	-	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
EGR3	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	49	63	-	12.7414	7.15e-06	0.0251	CCCCGCCCGCGCGCG
EGR3	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	52	66	+	12.7414	7.15e-06	0.0251	CCCCGCCCGCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	71	+	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	71	+	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	71	+	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	71	+	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	71	+	12.7414	7.15e-06	0.0251	TCCCGCCCAGGCAAC
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	34	50	-	8.40909	7.16e-06	0.296	GAGGTCAGGGCGCCCCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	+	14.2	7.17e-06	0.0397	AGCCGCAGGCA
TFAP2A	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	+	14.2	7.17e-06	0.0397	AGCCGCAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	-	14.2	7.17e-06	0.0397	AGCCGCAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	-	14.2	7.17e-06	0.0397	AGCCGCAGGCA
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	37	48	-	14.4143	7.17e-06	0.217	GGCGCCCACAGC
MAFG	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	7	27	-	13.8265	7.17e-06	0.576	ATTCTGCTGACTAGGCTCATG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	18	31	+	10.6182	7.17e-06	0.105	GAAAACAGGAAGCT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	72	85	-	10.6182	7.17e-06	0.105	GAAAACAGGAAGCT
Stat4	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	38	51	-	14.5517	7.17e-06	0.125	CTTCCGGGAAGTTT
Stat4	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	64	77	+	14.5517	7.17e-06	0.125	CTTCCGGGAAGTTT
ETV2	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	10	20	+	14.9508	7.17e-06	0.118	TACCGGAAGTG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	27	37	+	14.9508	7.17e-06	0.118	TACCGGAAGTG
ETV2	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	49	59	+	14.9508	7.17e-06	0.118	TACCGGAAGTG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	+	14.5862	7.17e-06	0.049	CGCCCCCAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	+	14.5862	7.17e-06	0.049	CGCCCCCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	+	14.5862	7.17e-06	0.049	CGCCCCCAGGGGG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	-	14.5862	7.17e-06	0.049	CGCCCCCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	+	14.6557	7.18e-06	0.0457	GGCCCCGGGGGGG
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	43	57	+	14.1212	7.18e-06	0.152	GCCAGTGACTCTGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	55	+	13.6939	7.19e-06	0.00522	CGGGGCGGGGGGGGCGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	24	44	-	13.6939	7.19e-06	0.00522	CGGGGCGGGGGGGGCGGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	28	48	-	13.6939	7.19e-06	0.00522	AGAGGAAGAGGAGGAGTTGGC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	36	56	-	13.6939	7.19e-06	0.00522	AGAGGAAGAGGAGGAGTTGGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	59	79	+	13.6939	7.19e-06	0.00522	AGAGGAAGAGGAGGAGTTGGC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	67	87	+	13.6939	7.19e-06	0.00522	AGAGGAAGAGGAGGAGTTGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	67	87	+	13.6939	7.19e-06	0.00522	GGAAGATGGGGTGCTGGAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	84	104	-	13.6939	7.19e-06	0.00522	GGGGACGGGGACGGGGGAGGG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	27	40	-	14.75	7.19e-06	0.118	GCAGGATGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	27	40	-	14.75	7.19e-06	0.118	GCAGGATGACTCAG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	18	28	-	13.6724	7.19e-06	0.215	GCCTGTGGCTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	18	28	-	13.6724	7.19e-06	0.215	GCCTGTGGCTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	43	53	+	13.6724	7.19e-06	0.215	GCCTGTGGCTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	43	53	+	13.6724	7.19e-06	0.215	GCCTGTGGCTT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	-	14.6885	7.19e-06	0.0539	TGCCCCGCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	-	14.6885	7.19e-06	0.0539	TGCCCCGCCGGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	52	62	+	14.1207	7.19e-06	0.0586	ACGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	52	62	+	14.1207	7.19e-06	0.0586	ACGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	52	62	+	14.1207	7.19e-06	0.0586	ACGCCCGCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	52	62	+	14.1207	7.19e-06	0.0586	ACGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	99	109	-	14.1207	7.19e-06	0.0586	ATGCCCACGCG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	-	14.7551	7.2e-06	0.14	AATGAGTCATT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	-	14.7551	7.2e-06	0.14	AATGAGTCATT
NFE2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	-	14.7551	7.2e-06	0.14	AATGAGTCATT
NFE2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	+	14.7551	7.2e-06	0.14	AATGAGTCATT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	+	14.7551	7.2e-06	0.14	AATGAGTCATT
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	+	14.7551	7.2e-06	0.14	AATGAGTCATT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	21	35	+	12.7241	7.2e-06	0.0251	CCCCGCCCCCTCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	21	35	+	12.7241	7.2e-06	0.0251	CCCCGCCCCCTCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	38	52	+	12.7241	7.2e-06	0.0251	CCCCGCCCCCTCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	38	52	+	12.7241	7.2e-06	0.0251	CCCCGCCCCCTCGCT
EGR3	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	78	92	+	12.7241	7.2e-06	0.0251	CCGCGCCCCCGCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	15	26	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	15	26	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	32	43	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	32	43	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	32	43	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	53	64	+	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	66	+	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP8	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	49	60	-	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	50	61	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	50	61	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	51	62	-	14.2368	7.2e-06	0.0134	GACACACCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	82	+	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	82	+	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	82	+	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	82	+	14.2368	7.2e-06	0.0134	GCCCCACCCACT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	8	24	-	11.1636	7.2e-06	0.00871	CGCGCCCCGCCCCTCTG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	8	24	-	11.1636	7.2e-06	0.00871	CGCGCCCCGCCCCTCTG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	25	41	-	11.1636	7.2e-06	0.00871	GGAGCCCCGCCCCTGGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	25	41	-	11.1636	7.2e-06	0.00871	GGAGCCCCGCCCCTGGC
SP4	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	49	65	+	11.1636	7.2e-06	0.00871	TAGGCTCCGCCCTCTGC
SP4	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	50	66	-	11.1636	7.2e-06	0.00871	TAGGCTCCGCCCTCTGC
SP4	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	74	90	+	11.1636	7.2e-06	0.00871	GGAGCCCCGCCCCTGGC
SP4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	91	107	+	11.1636	7.2e-06	0.00871	CGCGCCCCGCCCCTCTG
NFIA	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	88	97	+	13.3111	7.2e-06	0.734	AGTGCCAAGA
NFIA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	18	27	-	13.3111	7.2e-06	0.734	AGTGCCAAGA
NFIA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	18	27	-	13.3111	7.2e-06	0.734	AGTGCCAAGA
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	28	40	-	14.21	7.21e-06	1	TATATGCAAATCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	68	82	-	13.9369	7.21e-06	0.124	CAGGGGGAGGGGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	58	70	-	14.6721	7.22e-06	0.0539	AGCCCGCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	79	91	-	14.6721	7.22e-06	0.0539	AGCCCGCGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	79	91	-	14.6721	7.22e-06	0.0539	AGCCCGCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	79	91	-	14.6721	7.22e-06	0.0539	AGCCCGCGGGGCG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	35	52	+	-4.23684	7.22e-06	0.0198	GGAGGAAGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	43	60	+	-4.23684	7.22e-06	0.0198	GGAGGAAGAGGAGGAGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	55	72	-	-4.23684	7.22e-06	0.0198	GGAGGAAGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	63	80	-	-4.23684	7.22e-06	0.0198	GGAGGAAGAGGAGGAGGG
HOXC12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	20	30	+	14.7091	7.23e-06	1	AATCGTAAAAC
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	25	41	-	10.0492	7.23e-06	0.563	GGTTCATCGGGAGGGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	10	23	-	14.3462	7.23e-06	0.0062	CCCCCACCCCTTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	10	23	-	14.3462	7.23e-06	0.0062	CCCCCACCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	10	23	-	14.3462	7.23e-06	0.0062	CCCCCACCCCTTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	30	43	-	14.3462	7.23e-06	0.0062	AACACGCCCCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	56	69	+	14.3462	7.23e-06	0.0062	AACACGCCCCCGCC
SP3	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	14	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	47	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	47	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	47	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	47	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	89	+	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	2	12	-	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	26	36	-	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	68	78	-	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	101	111	-	14.0163	7.23e-06	0.00936	CCCCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	101	111	-	14.0163	7.23e-06	0.00936	CCCCCACCCAC
CEBPG	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	+	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	-	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	-	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	-	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	-	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPG	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	+	15.2653	7.23e-06	0.597	GTTACGCAAT
CEBPD	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	+	15.0577	7.23e-06	0.765	GTTACGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	-	15.0577	7.23e-06	0.765	GTTACGCAAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	-	15.0577	7.23e-06	0.765	GTTACGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	-	15.0577	7.23e-06	0.765	GTTACGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	-	15.0577	7.23e-06	0.765	GTTACGCAAT
CEBPD	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	+	15.0577	7.23e-06	0.765	GTTACGCAAT
MEF2B	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	+	13.4182	7.23e-06	0.215	ACTATAATTAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	5	19	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	5	19	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCTCA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	29	43	+	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCCCA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	35	49	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCCCA
Klf12	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	66	80	+	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCCCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	53	67	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCTCA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	53	67	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCTCA
Klf12	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	72	86	-	13.5902	7.23e-06	0.0286	GGCCCCGCCCCCCCA
RFX3	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	+	13.7424	7.23e-06	0.0581	TGGCGCCATGGCGACG
RFX3	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	-	13.7424	7.23e-06	0.0581	TGGCGCCATGGCGACG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	16	26	-	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	25	35	-	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	80	90	-	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	5	15	+	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	80	90	+	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	80	90	+	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
E2F6	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	104	114	+	14.7759	7.24e-06	0.0233	GGGAGGGAGAG
ETV6	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	27	36	+	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	71	80	+	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	71	80	+	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	83	+	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	18	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	44	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	68	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	68	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	88	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	88	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	88	-	14.5769	7.25e-06	0.0426	ACCGGAAGTA
Klf1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	11	21	+	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	48	58	+	14.6667	7.26e-06	0.0344	GGGCACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	71	81	-	14.6667	7.26e-06	0.0344	GGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	94	104	-	14.6667	7.26e-06	0.0344	ACCCACACCCA
TCF7L2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.0.0	21	34	+	14.5818	7.26e-06	1	GAAGATGAAAGAGA
TCF7L2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	21	34	+	14.5818	7.26e-06	1	GAAGATGAAAGAGA
PRDM1	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	14	28	-	14.2727	7.26e-06	0.22	GGGAAGTGAAAGGCG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	14	28	-	14.2727	7.26e-06	0.22	AAAAAAGGAAAGTCA
PRDM1	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	87	101	+	14.2727	7.26e-06	0.22	GGGAAGTGAAAGGCG
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	43	61	+	14.1452	7.26e-06	0.132	GAACCCAGCGGCGCGGGAC
Foxq1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	101	111	-	14.551	7.27e-06	1	TGTTGTTTATT
YY1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	49	60	-	14.5	7.27e-06	0.0555	GAAAATGGCGGA
Zfx	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	10	23	+	14.6364	7.27e-06	0.0179	TCTGCCTCGGCCTG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	20	+	13.9429	7.27e-06	0.0782	TGGTGACGTAACCC
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	20	+	13.9429	7.27e-06	0.0782	TGGTGACGTAACCC
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	20	+	13.9429	7.27e-06	0.0782	TGGTGACGTAACCC
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	20	+	13.9429	7.27e-06	0.0782	TGGTGACGTAACCC
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	7	27	+	13.6735	7.27e-06	0.00522	TGGGGAGAAGGCGGGGGGGCG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	9	29	+	13.6735	7.27e-06	0.00522	AGGGAAGGAGAAAGGAAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	20	40	+	13.6735	7.27e-06	0.00522	AGGGGCTGGGAGGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	20	40	+	13.6735	7.27e-06	0.00522	AGGGGCTGGGAGGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	21	41	+	13.6735	7.27e-06	0.00522	GGAGAAAGACGCGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	5	25	-	13.6735	7.27e-06	0.00522	TGGGGAGAAGGCGGGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	5	25	-	13.6735	7.27e-06	0.00522	TGGGGAGAAGGCGGGGGGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	19	39	-	13.6735	7.27e-06	0.00522	AGGGAAGGAGAAAGGAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	49	69	+	13.6735	7.27e-06	0.00522	GGAGAAAGACGCGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	39	59	-	13.6735	7.27e-06	0.00522	CAGGAAGAGGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	39	59	-	13.6735	7.27e-06	0.00522	CAGGAAGAGGGAGGAGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	76	96	+	13.6735	7.27e-06	0.00522	AGGGAAGGAGAAAGGAAGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	90	110	+	13.6735	7.27e-06	0.00522	TGGGGAGAAGGCGGGGGGGCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	75	95	-	13.6735	7.27e-06	0.00522	AAAGGGGGAGGAGCAGGGAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	86	106	-	13.6735	7.27e-06	0.00522	AGGGAAGGAGAAAGGAAGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	88	108	-	13.6735	7.27e-06	0.00522	TGGGGAGAAGGCGGGGGGGCG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	10	29	-	10.5046	7.28e-06	0.0376	CACCCCCACCCCCACCAAGC
SP2	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	9	23	+	14.3966	7.28e-06	0.00352	TCCCCTCCCTCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	16	30	-	14.3966	7.28e-06	0.00352	GCCCCACCCCACCGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	20	34	-	14.3966	7.28e-06	0.00352	TCCCCTCCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	20	34	-	14.3966	7.28e-06	0.00352	TCCCCTCCCTCCGCC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	66	80	+	14.3788	7.28e-06	0.0393	TTCTCGCGCGCGCTA
LIN54	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	3	11	+	12.5238	7.28e-06	1	ATTTGAATT
LIN54	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	48	56	-	12.5238	7.28e-06	1	ATTTGAATT
LIN54	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	86	94	+	12.5238	7.28e-06	1	ATTTGAATT
HLF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	+	14	7.28e-06	1	CATTACGTAATT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	64	78	-	12.6897	7.28e-06	0.0251	CCACGCCCCCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	64	78	-	12.6897	7.28e-06	0.0251	CCACGCCCCCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	7	21	+	12.6897	7.28e-06	0.0251	CCACGCCCCCCCGCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	43	57	+	12.6897	7.28e-06	0.0251	CCACGCCCCCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	43	57	+	12.6897	7.28e-06	0.0251	CCACGCCCCCCCGCC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	8	18	+	14.8163	7.28e-06	0.11	GGGTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	8	18	+	14.8163	7.28e-06	0.11	GGGTGAGTCAC
JUNB	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	97	107	-	14.8163	7.28e-06	0.11	GGGTGAGTCAC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	5	15	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	5	15	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	5	15	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	5	15	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	5	15	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	22	-	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	22	-	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	29	39	+	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	36	46	+	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	36	46	+	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	39	-	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	47	57	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	52	62	+	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	58	68	-	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	61	71	-	14.5818	7.29e-06	0.00508	GCCCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	76	86	+	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	76	86	+	14.5818	7.29e-06	0.00508	GCGCACGCGCC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	+	14.6207	7.29e-06	0.0736	CACAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	+	14.6207	7.29e-06	0.0736	CACAGCTGCT
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	-	14.6207	7.29e-06	0.0736	CACAGCTGCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	7	24	-	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	41	58	+	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	41	58	+	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	41	58	+	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	41	58	+	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	41	58	+	-4.26316	7.29e-06	0.0198	GGAAGGAAGGAAACCACA
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	37	47	-	14.3163	7.29e-06	0.169	GACCACGCGGT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	37	47	-	14.3163	7.29e-06	0.169	GACCACGCGGT
MAX::MYC	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	68	78	+	14.3163	7.29e-06	0.169	GACCACGCGGT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	10	26	+	11.1273	7.29e-06	0.00879	GTCGACCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	10	26	+	11.1273	7.29e-06	0.00879	GTCGACCCGCCCCTCCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.1346	7.3e-06	0.0647	GCCGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.5143	7.3e-06	0.0552	ACCGGATGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.5	7.3e-06	0.0591	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.1346	7.3e-06	0.0647	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.5	7.3e-06	0.0591	GCCGGAAGTG
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	+	12.0857	7.3e-06	0.0785	GGTCGCCCTGACAACG
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	+	12.0857	7.3e-06	0.0785	GGTCGCCCTGACAACG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	12	31	-	10.4954	7.3e-06	0.0376	CCCCACACCTCCGCCCCACA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	12	31	-	10.4954	7.3e-06	0.0376	CCCCACACCTCCGCCCCACA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	12	31	-	10.4954	7.3e-06	0.0376	CCCCACACCTCCGCCCCACA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	12	31	-	10.4954	7.3e-06	0.0376	CCCCACACCTCCGCCCCACA
Klf12	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	21	35	+	13.5738	7.3e-06	0.0286	GGCCCCGCCCCCCAC
Klf12	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	80	94	-	13.5738	7.3e-06	0.0286	GGCCCCGCCCCCCAC
MTF1	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	68	81	+	12.0976	7.3e-06	0.5	GTTCCACACGCCAC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	-	14.5345	7.31e-06	0.049	GGCCCCTAGGGCG
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	34	47	+	14.3269	7.31e-06	0.00624	CGCCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	70	83	+	14.3269	7.31e-06	0.00624	CGCCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	70	83	+	14.3269	7.31e-06	0.00624	CGCCCTCCTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	68	81	-	14.3269	7.31e-06	0.00624	CGCCCTCCTCCTCC
IRF2	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	67	84	+	11.578	7.31e-06	0.31	TGAAAGTGGAAGCAAACA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	23	41	-	13.3934	7.31e-06	0.0584	CGCCCAGCAGGGAGAGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	23	41	-	13.3934	7.31e-06	0.0584	CGCCCAGCAGGGAGAGCTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	22	35	-	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	22	35	-	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	27	40	-	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	31	44	-	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	48	61	+	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	54	67	-	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	70	83	+	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	71	84	+	13.931	7.31e-06	0.015	GGCCCCGCCCCCGG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	20	33	+	13.6212	7.31e-06	0.198	AAACCACGTCATCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	20	33	+	13.6212	7.31e-06	0.198	AAACCACGTCATCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	71	84	+	13.6212	7.31e-06	0.198	AAACCACGTCATCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	31	44	-	13.6212	7.31e-06	0.198	AAACCACGTCATCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	31	44	-	13.6212	7.31e-06	0.198	AAACCACGTCATCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	82	95	-	13.6212	7.31e-06	0.198	AAACCACGTCATCA
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	52	72	-	13.8226	7.32e-06	0.0935	TACTAGTTTCACTCTTTATTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	52	72	-	13.8226	7.32e-06	0.0935	TACTAGTTTCACTCTTTATTT
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	41	-	13.6531	7.32e-06	0.0681	AGTGACGTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	41	-	13.6531	7.32e-06	0.0681	AGTGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	41	-	13.6531	7.32e-06	0.0681	AGTGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	41	-	13.6531	7.32e-06	0.0681	AGTGACGTCACG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	28	43	+	14.0545	7.32e-06	0.03	CTCCACCCACCCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	28	43	+	14.0545	7.32e-06	0.03	CTCCACCCACCCACAC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	+	14.623	7.32e-06	0.0457	GGCCCTCTGGGCA
HINFP	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	27	38	-	14.6364	7.32e-06	0.0935	TCACGTCCGCGA
HINFP	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	77	88	+	14.6364	7.32e-06	0.0935	TCACGTCCGCGA
PLAG1	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	41	54	+	11.9184	7.32e-06	0.0605	GAGGGGCAGGGGTG
PLAG1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	92	105	+	11.9184	7.32e-06	0.0605	GAGGGGCAGGGGTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	10	23	-	11.9184	7.32e-06	0.0605	GAGGGGCAGGGGTG
PLAG1	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	61	74	-	11.9184	7.32e-06	0.0605	GAGGGGCAGGGGTG
NFAT5	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	13	22	-	13.1935	7.32e-06	1	GTTTTCCATT
NFAT5	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	93	102	+	13.1935	7.32e-06	1	GTTTTCCATT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	31	50	-	10.4862	7.32e-06	0.0376	CCACGTCCCACCCCCCCCCG
RREB1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	65	84	+	10.4862	7.32e-06	0.0376	CCACGTCCCACCCCCCCCCG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	37	54	+	11.5172	7.33e-06	0.0874	GCGCCACGCCCCTGGGTC
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	50	67	-	11.5172	7.33e-06	0.0874	GCGCCACGCCCCTGGGTC
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	33	-	9.53191	7.33e-06	0.211	GGGTGCAAAGGTGA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	33	-	9.53191	7.33e-06	0.211	GGGTGCAAAGGTGA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	63	76	+	9.53191	7.33e-06	0.211	GGGGTCGAAGGGCA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	63	76	+	9.53191	7.33e-06	0.211	GGGGTCGAAGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	+	14.0909	7.33e-06	0.0548	TCCCCGCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	+	14.0909	7.33e-06	0.0548	TCCCCGCAGGCG
EGR3	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	11	25	-	12.6724	7.33e-06	0.0251	CCCCGCCCCGGCACG
EGR3	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	34	48	-	12.6724	7.33e-06	0.0251	CCCCGCCCCGGCACG
EGR3	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	67	81	+	12.6724	7.33e-06	0.0251	CCCCGCCCCGGCACG
EGR3	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	90	104	+	12.6724	7.33e-06	0.0251	CCCCGCCCCGGCACG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	+	14.6393	7.34e-06	0.054	CGCCCTAAGGGCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	25	35	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	25	35	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	25	35	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	35	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	25	35	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	53	63	+	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	71	81	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	77	87	+	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	16	26	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	16	26	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	18	28	-	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	18	28	-	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	28	38	-	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	33	43	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	33	43	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	33	43	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	34	44	-	14.4655	7.34e-06	0.00825	CCCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	51	61	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	51	61	-	14.4655	7.34e-06	0.00825	GACACACCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	52	62	-	14.4655	7.34e-06	0.00825	GACACACCCAC
NEUROD2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	13.7414	7.34e-06	1	GCCATATGCT
PITX3	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	32	40	+	12.7885	7.34e-06	1	CTTAATCCC
NEUROD2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	13.7414	7.34e-06	1	GCCATATGCT
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	96	110	+	14.4138	7.34e-06	0.232	GGCCTCAAGGACAGG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	96	110	+	14.4138	7.34e-06	0.232	GGCCTCAAGGACAGG
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	74	92	+	14.129	7.35e-06	0.132	GAAGTCAGTCACGCGAGGC
Klf1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	2	12	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	15	25	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	15	25	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	36	46	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	59	69	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	60	70	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	60	70	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	60	70	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	60	70	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	60	70	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	101	111	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	101	111	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	101	111	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	101	111	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	102	112	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	103	113	+	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	2	12	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	3	13	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	3	13	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	3	13	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	3	13	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	6	16	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	20	30	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	20	30	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	20	30	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	20	30	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	20	30	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	21	31	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	31	41	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	31	41	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	31	41	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	31	41	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	45	55	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	46	56	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	58	68	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	58	68	-	14.6515	7.35e-06	0.0344	GGCCCCGCCCT
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	81	90	+	13.0404	7.35e-06	0.101	TTAGGGGGAA
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	15.2115	7.35e-06	0.1	GTCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	15.2115	7.35e-06	0.1	GTCACGTGAC
HES7	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	93	104	-	10.931	7.35e-06	0.171	AGGCACGCGCCA
IRF9	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	13	27	+	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	13	27	-	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	13	27	-	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	13	27	-	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	13	27	-	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	88	102	+	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
IRF9	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	88	102	-	6.4	7.35e-06	0.248	ACAGAAATCGAAAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	34	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	34	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	34	43	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	57	66	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	75	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	93	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	95	104	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	105	114	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	105	114	-	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	11	20	+	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	22	31	+	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	26	35	+	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	49	58	+	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	72	81	+	14.5306	7.35e-06	0.00692	AGGGCGGGGT
Klf12	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	93	107	-	13.5574	7.36e-06	0.0286	CACCACGCCCTGCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	6	20	+	14.3793	7.36e-06	0.00353	CCCCTGCCCCCGCCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	20	34	+	14.3793	7.36e-06	0.00353	CCCCTGCCCCCGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	55	69	+	14.3793	7.36e-06	0.00353	CCCCCGCCTCCCGAA
SP2	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	43	57	-	14.3793	7.36e-06	0.00353	CCCCTGCCCCCGCCC
SP2	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	58	72	+	14.3793	7.36e-06	0.00353	CCCCTGCCCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	45	59	-	14.3793	7.36e-06	0.00353	TCCCCGCCTCTGACG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	73	+	14.3793	7.36e-06	0.00353	CCCCCACCCCCGGCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	45	59	-	14.3793	7.36e-06	0.00353	TCCCCGCCTCTGACG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	46	60	-	14.3793	7.36e-06	0.00353	CCCCCGCCTCCCGAA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	46	60	-	14.3793	7.36e-06	0.00353	CCCCCGCCTCCCGAA
SP2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	95	109	-	14.3793	7.36e-06	0.00353	CCCCTGCCCCCGCCC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	101	114	+	14.6212	7.36e-06	0.0181	ATGGCCCCGGCCTC
HOXC11	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	55	65	+	14.2241	7.36e-06	1	CGTCGTAAAAA
HOXC11	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	60	-	14.2241	7.36e-06	1	CGTCGTAAAAA
HOXC11	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	60	-	14.2241	7.36e-06	1	CGTCGTAAAAA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	-	14.6066	7.36e-06	0.0457	GGCCCCTAGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	10	30	-	13.6531	7.37e-06	0.00527	GGAGAGGGGAGAGGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	10	30	-	13.6531	7.37e-06	0.00527	GGAGAGGGGAGAGGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	45	65	-	13.6531	7.37e-06	0.00527	GGAGGAGGAGGAGGGCAAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	79	99	-	13.6531	7.37e-06	0.00527	GATGAAGGGAGGTGGGAGAGG
ZIC3	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	15	29	+	13.2714	7.38e-06	0.0867	CGCTTCCCGCTGCGC
E2F6	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	7	17	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	32	42	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	33	43	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	33	43	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	41	51	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	41	51	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	41	51	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	41	51	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	48	58	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	61	71	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	69	79	-	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	36	46	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	40	50	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	44	54	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	57	67	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	72	82	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
E2F6	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	98	108	+	14.7414	7.38e-06	0.0233	GGGAGGGAGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	+	14.5172	7.38e-06	0.049	TGCCGGCGGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	+	14.5172	7.38e-06	0.049	TGCCGGCGGGGCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	+	14.5172	7.38e-06	0.049	TGCCCCGAAGGCC
SP4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	49	65	+	11.0909	7.38e-06	0.00883	CTGACTCCGCCCATCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	50	66	-	11.0909	7.38e-06	0.00883	CTGACTCCGCCCATCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	50	66	-	11.0909	7.38e-06	0.00883	CTGACTCCGCCCATCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	50	66	-	11.0909	7.38e-06	0.00883	CTGACTCCGCCCATCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	50	66	-	11.0909	7.38e-06	0.00883	CTGACTCCGCCCATCCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	+	14.5273	7.38e-06	0.0612	AGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	-	14.5273	7.38e-06	0.0612	AGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	-	14.5273	7.38e-06	0.0612	AGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	-	14.5273	7.38e-06	0.0612	AGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	-	14.5273	7.38e-06	0.0612	AGCCTCCGGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	14.766	7.39e-06	0.0372	TCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	14.766	7.39e-06	0.0372	TCCGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	14.766	7.39e-06	0.0372	TCCGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	14.766	7.39e-06	0.0372	TCCGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	14.766	7.39e-06	0.0372	TCCGGAAGTG
SOX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	6	21	+	-1.57576	7.39e-06	1	AGACAGTGACAGTGTT
SOX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	6	21	+	-1.57576	7.39e-06	1	AGACAGTGACAGTGTT
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	73	84	+	14.3714	7.39e-06	0.217	GCCGACCACCAG
GLIS3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	89	102	+	10.7727	7.39e-06	0.379	TGCCTCCCACGGAG
GLIS3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	13	26	-	10.7727	7.39e-06	0.379	TGCCTCCCACGGAG
RUNX1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	1	11	-	13.6552	7.39e-06	0.215	CTCTGTGGCTT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	83	100	-	-4.30263	7.39e-06	0.0198	GGGCGAAAGGGAGCCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	83	100	-	-4.30263	7.39e-06	0.0198	GGGCGAAAGGGAGCCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	83	100	-	-4.30263	7.39e-06	0.0198	GGGCGAAAGGGAGCCAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	83	100	-	-4.30263	7.39e-06	0.0198	GGGCGAAAGGGAGCCAGG
TBR1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	79	88	-	14.3617	7.39e-06	0.473	AGGTGCGAAA
Sox3	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	12	21	+	14.8448	7.39e-06	0.659	CCTTTGTCTC
Sox3	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	75	84	+	14.8448	7.39e-06	0.659	CCTTTGTCTC
TBR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	36	+	14.3617	7.39e-06	0.473	AGGTGCGAAA
TBR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	36	+	14.3617	7.39e-06	0.473	AGGTGCGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	36	+	14.3617	7.39e-06	0.473	AGGTGCGAAA
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	36	+	14.3617	7.39e-06	0.473	AGGTGCGAAA
TBR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	36	+	14.3617	7.39e-06	0.473	AGGTGCGAAA
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	75	84	-	14.8448	7.39e-06	0.659	CCTTTGTCTC
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	75	84	-	14.8448	7.39e-06	0.659	CCTTTGTCTC
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	75	84	-	14.8448	7.39e-06	0.659	CCTTTGTCTC
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	75	84	-	14.8448	7.39e-06	0.659	CCTTTGTCTC
POU2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	13	24	+	13.94	7.39e-06	0.632	AATATGTAAATC
POU2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	13	24	+	13.94	7.39e-06	0.632	AATATGTAAATC
SP1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	5	15	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	8	18	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	13	23	-	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	19	29	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	32	42	+	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	28	38	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	28	38	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	28	38	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	29	39	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	29	39	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	32	42	-	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	32	42	-	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	52	+	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	52	+	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	34	44	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	46	56	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	49	59	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	59	69	+	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	59	69	+	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	66	76	+	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	61	71	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	71	81	+	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	61	71	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	61	71	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	61	71	-	14.5962	7.4e-06	0.00426	GCCCCGCCTTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	70	80	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	74	84	-	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	90	100	+	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	90	100	+	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	92	102	+	14.5962	7.4e-06	0.00426	GTCCCGCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	100	110	+	14.5962	7.4e-06	0.00426	TCCCCTCCTCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	16	25	+	14.4128	7.4e-06	0.0232	CACCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	37	46	+	14.4128	7.4e-06	0.0232	CACCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	37	46	+	14.4128	7.4e-06	0.0232	CACCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	33	42	-	14.4128	7.4e-06	0.0232	CACCCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	45	54	-	14.4128	7.4e-06	0.0232	CACCCCCCAC
ATF7	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	24	37	+	13.8857	7.4e-06	0.0782	GGCTGACGTCATCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	-	14.1818	7.42e-06	0.0397	CGCCGCAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	-	14.1818	7.42e-06	0.0397	CGCCGCAGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	+	14.5902	7.42e-06	0.0457	GGCCCCCTGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	+	14.5902	7.42e-06	0.0457	GGCCCCCTGGGCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	71	82	+	14.2105	7.42e-06	0.0134	ACCCCCCCCACT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	71	82	+	14.2105	7.42e-06	0.0134	ACCCCCCCCACT
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	+	13.697	7.42e-06	0.0585	GGTTACCATGGAATCC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	+	13.697	7.42e-06	0.0585	GGTTACCATGGAATCC
USF2	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	58	-	14.7755	7.42e-06	0.0487	GCCACGTGATC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	72	+	14.7755	7.42e-06	0.0487	ACCACGTGACT
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	22	32	-	14.5636	7.43e-06	0.00513	GCACCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	22	32	-	14.5636	7.43e-06	0.00513	GCACCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	22	32	-	14.5636	7.43e-06	0.00513	GCACCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	22	32	-	14.5636	7.43e-06	0.00513	GCACCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	22	32	-	14.5636	7.43e-06	0.00513	GCACCTGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	83	93	+	14.5636	7.43e-06	0.00513	GCACCTGCGCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	30	46	+	11.0727	7.43e-06	0.00883	CCCGCCCCGCCCCTGCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	30	46	+	11.0727	7.43e-06	0.00883	CCCGCCCCGCCCCTGCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	30	46	+	11.0727	7.43e-06	0.00883	CCCGCCCCGCCCCTGCC
SP4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	69	85	-	11.0727	7.43e-06	0.00883	CCCGCCCCGCCCCTGCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	16	26	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	16	26	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	26	36	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	43	53	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	43	53	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	40	50	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	40	50	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	40	50	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	40	50	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	44	54	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	61	71	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	86	96	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	86	96	+	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	83	93	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	83	93	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	89	99	-	14.931	7.45e-06	0.0253	CGGCGGGAGGA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	+	14.6939	7.45e-06	0.14	AGTGACTCATC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	48	67	+	10.4404	7.45e-06	0.0376	CCCCCCCGCCCCCCCCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	49	68	+	10.4404	7.45e-06	0.0376	CCCCCCGCCCCCCCCCCCCG
Gmeb1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	19	35	+	12.1974	7.45e-06	0.481	CAGGTGACGTCACACGC
Gmeb1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	80	96	-	12.1974	7.45e-06	0.481	CAGGTGACGTCACACGC
SP2	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	9	23	+	14.3621	7.45e-06	0.00357	CGCCCTCCCCCTCGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	28	42	+	14.3621	7.45e-06	0.00357	GGCCCACCCCTTCCA
SP2	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	73	87	-	14.3621	7.45e-06	0.00357	GGCCCACCCCTTCCA
SP2	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	92	106	-	14.3621	7.45e-06	0.00357	CGCCCTCCCCCTCGG
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	-	15.0545	7.45e-06	1	AATTACGTAACG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	+	14.5738	7.45e-06	0.0457	GCCCCGGGGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	-	14.5738	7.45e-06	0.0457	GCCCCGGGGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	-	14.5738	7.45e-06	0.0457	GCCCCGGGGGGCA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	+	14.5738	7.45e-06	0.0457	GCCCCGGGGGGCA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	-	14.5738	7.45e-06	0.0457	GCCCCGGGGGGCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	40	53	-	13.8966	7.46e-06	0.0152	GGCCACACCCCTCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	11	31	-	13.6327	7.46e-06	0.00531	GGGGCAGGAGGAGGAGTTGCG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	17	37	-	13.6327	7.46e-06	0.00531	GGAAGCGGGCGGGGAGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	17	37	-	13.6327	7.46e-06	0.00531	GGAAGCGGGCGGGGAGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	90	110	-	13.6327	7.46e-06	0.00531	GGAGGGGGAGGGGACGAGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	90	110	-	13.6327	7.46e-06	0.00531	GGAGGGGGAGGGGACGAGGAA
ERG	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
ERG	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	14.2182	7.46e-06	0.0754	ACCGGAAGCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	10	27	+	-4.32895	7.46e-06	0.0198	CAGAGGGAGGGAGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	20	37	+	-4.32895	7.46e-06	0.0198	GGGTGGGAGGGAGGTGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	20	37	+	-4.32895	7.46e-06	0.0198	GGGTGGGAGGGAGGTGGG
EN2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	12.0508	7.47e-06	1	GCCAATTAGG
MAFF	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	24	41	-	14.3111	7.47e-06	0.87	GCTTTGTCAGCAACTCTG
MAFF	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	12	29	+	14.3111	7.47e-06	0.87	GCTTTGTCAGCAACTCTG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	15	29	+	13.5246	7.47e-06	0.0286	GGCCCCGCCCTGCCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	15	29	+	13.5246	7.47e-06	0.0286	GGCCCCGCCCTGCCG
Klf12	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	30	44	+	13.5246	7.47e-06	0.0286	GGCCCCGCCCCTCCG
Klf12	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	26	40	-	13.5246	7.47e-06	0.0286	GGCCCCGCCCCTCCG
Klf12	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	75	89	+	13.5246	7.47e-06	0.0286	GGCCCCGCCCCTCCG
Klf12	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	71	85	-	13.5246	7.47e-06	0.0286	GGCCCCGCCCCTCCG
EGR3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	52	66	-	12.6207	7.47e-06	0.0253	CCCCGCCCCCACGCC
EGR3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	49	63	+	12.6207	7.47e-06	0.0253	CCCCGCCCCCACGCC
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	21	35	-	14.7447	7.48e-06	0.254	AAGGGTGATGTCACT
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	65	79	-	14.7447	7.48e-06	0.254	AAGGGTGATGTCACT
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	36	50	+	14.7447	7.48e-06	0.254	AAGGGTGATGTCACT
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	80	94	+	14.7447	7.48e-06	0.254	AAGGGTGATGTCACT
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	24	36	+	14.7959	7.48e-06	0.297	GCAATGATGTCAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	24	36	+	14.7959	7.48e-06	0.297	GCAATGATGTCAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	24	36	+	14.7959	7.48e-06	0.297	GCAATGATGTCAC
JUN	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	24	36	+	14.7959	7.48e-06	0.297	GCAATGATGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	24	36	+	14.7959	7.48e-06	0.297	GCAATGATGTCAC
JUN	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	92	104	+	14.7959	7.48e-06	0.297	TGGATGATGCAAT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	+	14.2885	7.48e-06	0.0588	AGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	+	14.2885	7.48e-06	0.0588	AGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	+	14.2885	7.48e-06	0.0588	CGCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	-	14.2885	7.48e-06	0.0588	CGCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	-	14.2885	7.48e-06	0.0588	CGCCTGGGGCA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	69	82	-	14.7115	7.48e-06	0.118	AATGGGTGAGTCAG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	21	+	14.2885	7.49e-06	0.00636	TCCCCGCCCCTTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	15	28	-	14.2885	7.49e-06	0.00636	TCCCCGCCCCTTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	53	66	+	14.2885	7.49e-06	0.00636	CCCCTTCCCCCACC
EGR1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	41	54	-	14.2885	7.49e-06	0.00636	TCCCCGCCCCTTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	74	+	14.2885	7.49e-06	0.00636	TCCCCGCCCCTTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	100	+	14.2885	7.49e-06	0.00636	TCCCCGCCCCTTCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	23	38	+	14.0182	7.49e-06	0.03	CCACGCCCACCCGGAA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	23	38	+	14.0182	7.49e-06	0.03	CCACGCCCACCCGGAA
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	23	38	+	14.0182	7.49e-06	0.03	CCACGCCCACCCGGAA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	23	38	+	14.0182	7.49e-06	0.03	CCACGCCCACCCGGAA
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	31	44	-	13.3934	7.49e-06	0.176	GCCCCCCCACCTCG
Myog	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	51	+	14.6122	7.5e-06	0.072	GGCAGCTGCGA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	-	14.0727	7.5e-06	0.0548	AGCCCGCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	-	14.0727	7.5e-06	0.0548	AGCCCGCGGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	+	14.0727	7.5e-06	0.0548	AGCCCGCGGGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	6	16	-	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	21	31	+	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	21	31	+	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	63	73	-	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	63	73	-	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	63	73	-	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	63	73	-	14.5455	7.5e-06	0.00514	GCGCGGGCGCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	33	45	+	13.9394	7.5e-06	0.196	TGGGGTTCCCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	33	45	+	13.9394	7.5e-06	0.196	TGGGGTTCCCCCT
Vdr	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	4	19	+	10.9508	7.5e-06	0.492	GGGTTCGCCCAGTTCC
Vdr	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	19	34	-	10.9508	7.5e-06	0.492	GGGTTCGCCCAGTTCC
Vdr	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	81	96	+	10.9508	7.5e-06	0.492	GGGTTCGCCCAGTTCC
Vdr	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	96	111	-	10.9508	7.5e-06	0.492	GGGTTCGCCCAGTTCC
SPIC	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	97	110	+	14.1268	7.51e-06	0.11	AATATGAGGAAGTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	30	43	+	13.8793	7.51e-06	0.0152	CGCCCCGCCCCCGT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	30	43	+	13.8793	7.51e-06	0.0152	CGCCCCGCCCCCGT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	30	43	+	13.8793	7.51e-06	0.0152	CGCCCCGCCCCCGT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	30	43	+	13.8793	7.51e-06	0.0152	CGCCCCGCCCCCGT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.9655	7.52e-06	0.0508	TCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.9655	7.52e-06	0.0508	TCCGGAAGTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.9655	7.52e-06	0.0508	TCCGGAAGTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.9655	7.52e-06	0.0508	TCCGGAAGTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.9655	7.52e-06	0.0508	TCCGGAAGTG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	71	82	+	14.1842	7.52e-06	0.0134	GCCACGGCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	71	82	+	14.1842	7.52e-06	0.0134	GCCACGGCCACT
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	17	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	17	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	17	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	17	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	17	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	37	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	37	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	37	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	37	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	37	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	65	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	65	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	65	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	65	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	65	-	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	78	89	+	14.2545	7.53e-06	0.0563	ACGCCGGAAGTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	56	70	+	12.6034	7.53e-06	0.0253	CCCCCCCCCCGCGCC
SCRT2	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	15	27	-	13.2459	7.53e-06	0.673	GCGCAACCGGTGG
SCRT2	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	88	100	+	13.2459	7.53e-06	0.673	GCGCAACCGGTGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	7	23	+	11.0364	7.53e-06	0.00883	GCAGCCCCGCCTCCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	7	23	+	11.0364	7.53e-06	0.00883	GCAGCCCCGCCTCCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	10	26	-	11.0364	7.53e-06	0.00883	TGAGACCCGCCCCCCAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	10	26	-	11.0364	7.53e-06	0.00883	TGAGACCCGCCCCCCAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	10	26	-	11.0364	7.53e-06	0.00883	TGAGACCCGCCCCCCAG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	20	30	+	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	20	30	+	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	36	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	40	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	68	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	68	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	65	75	+	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	90	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	88	98	+	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	104	+	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	11	21	-	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	18	28	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	18	28	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	25	35	-	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	25	35	-	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	40	50	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	55	65	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	55	65	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	64	74	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	64	74	-	14.3966	7.53e-06	0.00825	GCCGCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	79	89	-	14.3966	7.53e-06	0.00825	ACCCCTCCCCC
BATF3	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	2	15	-	8.93939	7.53e-06	0.1	CTGTGACGTCATAA
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	37	50	+	8.93939	7.53e-06	0.1	CTGTGACGTCATAA
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	37	50	+	8.93939	7.53e-06	0.1	CTGTGACGTCATAA
BATF3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	65	78	-	8.93939	7.53e-06	0.1	CTGTGACGTCATAA
BATF3	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	100	113	+	8.93939	7.53e-06	0.1	CTGTGACGTCATAA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	+	14.5574	7.53e-06	0.0457	CCCCCTGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	-	14.5574	7.53e-06	0.0457	CCCCCTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	-	14.5574	7.53e-06	0.0457	CCCCCTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	-	14.5574	7.53e-06	0.0457	CCCCCTGGGGGCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	16	30	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCTTGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	16	30	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCTTGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	16	30	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCTTGA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	16	30	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCTTGA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	8	22	-	13.5082	7.53e-06	0.0286	GGCCCCGCCCCCTCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	34	48	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCCTCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	28	42	-	13.5082	7.53e-06	0.0286	GGCCCCGCCCCCTCC
Klf12	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	30	44	-	13.5082	7.53e-06	0.0286	GGCCCCGCCCCCTCC
Klf12	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	55	69	+	13.5082	7.53e-06	0.0286	GGCCCCGCCCCCTCC
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	42	57	+	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	42	57	+	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	42	57	+	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	69	84	+	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	31	46	-	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	31	46	-	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	31	46	-	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	31	46	-	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
GLIS1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	58	73	-	1.11538	7.53e-06	0.29	CCTCCCCCCACTTCGC
PRDM1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	61	75	+	14.2182	7.54e-06	0.221	CGGAAATGAAAGTGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	79	96	-	-4.35526	7.54e-06	0.02	GGCGGGAAAGCAGGAATG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	8	18	+	14.5273	7.54e-06	0.0287	GTACTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	50	60	+	14.5273	7.54e-06	0.0287	GCACTTCCGGA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	72	-	14.5273	7.54e-06	0.0287	GCACTTCCGGA
ELK4	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	74	84	-	14.5273	7.54e-06	0.0287	GTACTTCCGGT
CDX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	75	85	+	14.6102	7.54e-06	1	GGGTCATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	75	85	+	14.6102	7.54e-06	1	GGGTCATAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	12	32	-	13.6122	7.55e-06	0.00535	GGTGGAGCCTGGGAGTGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	12	32	-	13.6122	7.55e-06	0.00535	GGTGGAGCCTGGGAGTGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	49	69	+	13.6122	7.55e-06	0.00535	GGAGGAGGGGAAGACGGGCCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	34	54	-	13.6122	7.55e-06	0.00535	GGAGGGGGCGCAGAGGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	36	56	-	13.6122	7.55e-06	0.00535	GGGGGCTAAAGGGAGGGGAGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	29	43	+	14.3448	7.55e-06	0.00361	GCCCTGCCCACCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	20	34	-	14.3448	7.55e-06	0.00361	GTTCCACCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	20	34	-	14.3448	7.55e-06	0.00361	GTTCCACCCCCTCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	34	48	-	14.3448	7.55e-06	0.00361	GCCCTGCCCACCCCC
SP2	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	62	76	+	14.3448	7.55e-06	0.00361	TCCCCGCCTCCAGAC
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	80	92	+	14.2857	7.55e-06	1	AGCCATAAATAAC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	+	14.6066	7.55e-06	0.0548	AGCCCTTGAGGCT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	25	-	13.377	7.55e-06	0.176	ACCCCCCCGCGGCC
JUND	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	-	15.0638	7.55e-06	0.167	TGTGACTCATA
GATA2	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	72	85	+	14.4182	7.56e-06	0.951	TGGCCCTTATCTGC
ETV4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	13.8621	7.56e-06	0.0647	ACCGGATGTG
ETV4	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	13.8621	7.56e-06	0.0647	ACCGGAAATA
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	75	87	-	9.93878	7.57e-06	0.233	CTGGGAATCCCCT
ZBED1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	18	30	-	12.2909	7.57e-06	1	ATATCGCGATACT
Myod1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	59	+	14.5918	7.57e-06	0.0883	GGCACCTGCCGCC
Myod1	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	87	99	+	14.5918	7.57e-06	0.0883	TACAGCTGCCGCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	33	45	-	14.5918	7.57e-06	0.0883	GGCAGCTGCCACA
Myod1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	102	114	-	14.5918	7.57e-06	0.0883	GGCAGCTGCCACA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	26	42	-	11.0182	7.57e-06	0.00883	CGAGCCCCGCCTCCCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	26	42	-	11.0182	7.57e-06	0.00883	CGAGCCCCGCCTCCCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	60	76	-	11.0182	7.57e-06	0.00883	CCACCCCCGCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	60	76	-	11.0182	7.57e-06	0.00883	CCACCCCCGCCCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	68	84	-	11.0182	7.57e-06	0.00883	CGAGCCCCGCCTCCCTG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	68	84	-	11.0182	7.57e-06	0.00883	CGAGCCCCGCCTCCCTG
EGR3	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	44	58	-	12.5862	7.58e-06	0.0253	ACCCGCCCCCACAAG
EGR3	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	57	71	+	12.5862	7.58e-06	0.0253	ACCCGCCCCCACAAG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	18	33	+	14	7.58e-06	0.03	TTCCTCCCACGCTTTA
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	18	33	+	14	7.58e-06	0.03	TTCCTCCCACGCTTTA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	44	59	-	14	7.58e-06	0.03	CTCCGCCCACCCTCCA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	57	-	14.8525	7.58e-06	0.118	TACCGGAAACG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	57	-	14.8525	7.58e-06	0.118	TACCGGAAACG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	21	+	13.8739	7.58e-06	0.124	AGGGGTGAGAGGTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	21	+	13.8739	7.58e-06	0.124	AGGGGTGAGAGGTCA
SMAD2::SMAD3::SMAD4	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	33	45	-	14.3443	7.59e-06	0.326	CTGTCTGTCTCAT
SMAD2::SMAD3::SMAD4	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	71	83	+	14.3443	7.59e-06	0.326	CTGTCTGTCTCAT
SMAD2::SMAD3::SMAD4	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	71	83	+	14.3443	7.59e-06	0.326	CTGTCTGTCTCAT
SMAD2::SMAD3::SMAD4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	71	83	+	14.3443	7.59e-06	0.326	CTGTCTGTCTCAT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	7	20	-	14.2692	7.59e-06	0.00643	GCCCCGCCCCTGCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	79	92	+	14.2692	7.59e-06	0.00643	GCCCCGCCCCTGCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	4	15	-	14.1447	7.59e-06	0.0134	CCCACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	4	15	-	14.1447	7.59e-06	0.0134	CCCACGCCCCGC
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	40	51	+	14.1447	7.59e-06	0.0134	CCCACGCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	43	54	+	14.1447	7.59e-06	0.0134	CCCACGCCCCGC
SP8	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	61	72	-	14.1447	7.59e-06	0.0134	CCCACGCCCCGC
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	6	18	-	14.5306	7.59e-06	0.326	AAAAGGTCACATG
NR2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	32	44	+	14.5306	7.59e-06	0.326	AAAAGGTCACATG
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	32	44	+	14.5306	7.59e-06	0.326	AAAAGGTCACATG
FLI1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	15.0851	7.59e-06	0.0685	ACCGGAAACG
TFEC	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	13.5732	7.59e-06	0.129	GGCACGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	13.5732	7.59e-06	0.129	GGCACGTGAC
Mitf	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	28	+	12.4898	7.59e-06	0.0831	GGTCACGTGT
Mitf	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	48	+	12.4898	7.59e-06	0.0831	GGTCACGTGT
Mitf	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	67	76	-	12.4898	7.59e-06	0.0831	GGTCACGTGT
Mitf	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	87	96	-	12.4898	7.59e-06	0.0831	GGTCACGTGT
MAX	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	13.9038	7.59e-06	0.276	ACCACGTGTC
MAX	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	13.9038	7.59e-06	0.276	ACCACGTGTC
KLF5	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	6	15	+	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	15	24	-	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	15	24	-	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	15	24	-	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	18	27	-	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	46	55	+	14.4694	7.59e-06	0.0058	GCCACGCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	64	73	-	14.4694	7.59e-06	0.0058	GCCACGCCCA
Klf12	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	17	31	+	13.4918	7.6e-06	0.0286	GGCCCCGCCCACGCC
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	57	72	-	14.5732	7.6e-06	0.48	TGCTATGCAAATAAAT
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	47	62	+	14.5732	7.6e-06	0.48	GTGCATGCAAATTGAC
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	9	23	-	14.25	7.6e-06	0.265	CTAGGCCAAAGTCCT
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	9	23	-	14.25	7.6e-06	0.265	CTAGGCCAAAGTCCT
Zfx	FLIPPED__Lincrna.flip.antisense__chr20:37063936..37064050,+__2383.1.0.0	96	109	+	14.5758	7.61e-06	0.0185	CGAGCTGCGGCCTA
Zfx	WILDTYPE__Lincrna.flip.sense__chr20:37063936..37064050,-__473.1.0.0	6	19	-	14.5758	7.61e-06	0.0185	CGAGCTGCGGCCTA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	70	83	-	13.8	7.61e-06	0.0782	AACTGACGTCATCC
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	70	83	-	13.8	7.61e-06	0.0782	AACTGACGTCATCC
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	70	83	-	13.8	7.61e-06	0.0782	AACTGACGTCATCC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	31	48	-	-4.38158	7.61e-06	0.02	GGGAGGGAGCGCGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	67	84	+	-4.38158	7.61e-06	0.02	GGGAGGGAGCGCGGAGGG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	11	22	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	11	22	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	20	31	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	20	31	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	35	-	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	41	52	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	74	-	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	74	-	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	80	91	+	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	95	-	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	104	-	14.2364	7.61e-06	0.0563	CGCCCGGAAGTG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	24	38	-	14.6346	7.61e-06	0.0699	GGGCGGACCAATCAC
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	24	38	-	14.6346	7.61e-06	0.0699	GGGCGGACCAATCAC
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	24	38	-	14.6346	7.61e-06	0.0699	GGGCGGACCAATCAC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	24	38	-	14.6346	7.61e-06	0.0699	GGGCGGACCAATCAC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	+	14.4727	7.62e-06	0.0612	CGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	+	14.4727	7.62e-06	0.0612	CGCCTCCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	-	14.4727	7.62e-06	0.0612	CGCCTCCGGCG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	59	73	-	13.2	7.62e-06	0.0867	TCCCTCCCGCCGCGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	50	66	+	11	7.62e-06	0.00888	CGAGCCCCGCCCTCGTC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	87	106	-	10.3761	7.62e-06	0.0376	CAACACACCACCTGCCCAGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	87	106	-	10.3761	7.62e-06	0.0376	CAACACACCACCTGCCCAGC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	87	106	-	10.3761	7.62e-06	0.0376	CAACACACCACCTGCCCAGC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	33	44	+	14.1897	7.62e-06	0.29	CCGACCACCATG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	33	44	+	14.1897	7.62e-06	0.29	CCGACCACCATG
Gabpa	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	30	40	-	14.5082	7.63e-06	0.0258	CCGGAAGAGGC
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	10.2623	7.63e-06	0.551	TGACAAGTGCCA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	10.2623	7.63e-06	0.551	TGACAAGTGCCA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	64	76	+	13.6207	7.63e-06	0.108	GTCCCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	64	76	+	13.6207	7.63e-06	0.108	GTCCCGGAAGTGC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	97	107	+	14.7143	7.63e-06	0.0487	AGCATGTGACC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	97	107	+	14.7143	7.63e-06	0.0487	AGCATGTGACC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	97	107	+	14.7143	7.63e-06	0.0487	AGCATGTGACC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	97	107	+	14.7143	7.63e-06	0.0487	AGCATGTGACC
PAX1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	68	84	+	12.1636	7.63e-06	0.48	CGTCATGCCTCAGTAGG
PAX1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	73	89	+	12.1636	7.63e-06	0.48	CGTCATGCCTCAGTAGG
PAX1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	26	42	-	12.1636	7.63e-06	0.48	CGTCATGCCTCAGTAGG
PAX1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	31	47	-	12.1636	7.63e-06	0.48	CGTCATGCCTCAGTAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	9	23	-	14.3276	7.63e-06	0.00362	GACCCGCCCCCCAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	9	23	-	14.3276	7.63e-06	0.00362	GACCCGCCCCCCAGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	9	23	-	14.3276	7.63e-06	0.00362	GACCCGCCCCCCAGG
SP2	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	18	32	-	14.3276	7.63e-06	0.00362	CCTCCGCCTTCCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	25	39	-	14.3276	7.63e-06	0.00362	GCCCCGCCTTCCTTT
SP2	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	57	+	14.3276	7.63e-06	0.00362	GCCCCGCCCCGCGAA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	59	73	+	14.3276	7.63e-06	0.00362	GCCCCGCCTTCCTTT
SP2	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	58	72	-	14.3276	7.63e-06	0.00362	GCCCCGCCCCGCGAA
SP2	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	100	114	-	14.3276	7.63e-06	0.00362	CTCCCACCCCCGGCG
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	23	36	-	13.2237	7.63e-06	0.557	GCGACAGCTGGCGA
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	27	40	+	13.2237	7.63e-06	0.557	GCGACAGCTGGCGA
Ascl2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	-	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	-	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	-	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	-	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	-	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	+	14.6	7.64e-06	0.14	GGCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	-	14.6	7.64e-06	0.14	GGCAGCTGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	-	13.9286	7.64e-06	0.0857	AGCCCGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	-	13.9286	7.64e-06	0.0857	AGCCCGGGGGCG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	30	43	-	14.6923	7.64e-06	0.118	TAAGTATGACTCAT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	7	27	-	13.5918	7.64e-06	0.00538	GAGGGGAGAGGGGAGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	7	27	-	13.5918	7.64e-06	0.00538	GAGGGGAGAGGGGAGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	24	44	-	13.5918	7.64e-06	0.00538	GGAGGGAGGAGGGAGGAAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	26	46	-	13.5918	7.64e-06	0.00538	AGTGGCGGGGGAGGGGGGACA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	49	69	+	13.5918	7.64e-06	0.00538	AGTGGCGGGGGAGGGGGGACA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	46	66	-	13.5918	7.64e-06	0.00538	AGTGGCGGGGGAGGGGGGACA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	69	89	+	13.5918	7.64e-06	0.00538	AGTGGCGGGGGAGGGGGGACA
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	75	95	-	13.5918	7.64e-06	0.00538	GATGAAGAAAGAAGAGAAGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	+	14.5246	7.65e-06	0.0457	CGCCCCCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	+	14.5246	7.65e-06	0.0457	CGCCCCCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	+	14.5246	7.65e-06	0.0457	CGCCCCCAGGGGG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	-	14.5246	7.65e-06	0.0457	CGCCCCCAGGGGG
Klf12	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	60	74	-	13.4754	7.65e-06	0.0286	AGCCACGCCCCAGCC
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	51	64	-	14.1475	7.65e-06	0.365	GCTCCCAGGGGAGT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	51	64	-	14.1475	7.65e-06	0.365	GCTCCCAGGGGAGT
Klf1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	35	45	+	14.5152	7.65e-06	0.0349	GGCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	70	80	-	14.5152	7.65e-06	0.0349	GGCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	70	80	-	14.5152	7.65e-06	0.0349	GGCCACTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	70	80	-	14.5152	7.65e-06	0.0349	GGCCACTCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	70	80	-	14.5152	7.65e-06	0.0349	GGCCACTCCCA
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	83	99	-	3.37079	7.66e-06	0.298	CGGGGTCCAAGCTCAGC
IRF2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	70	87	-	11.4679	7.66e-06	0.31	GGAAACTGAAACTTATGC
Tcf12	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	10	20	-	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	95	105	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	95	105	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	95	105	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	95	105	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	103	113	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	103	113	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	103	113	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	103	113	+	14.5714	7.66e-06	0.0993	GGCAGCTGGAG
EGR2	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	16	26	+	13.9483	7.67e-06	0.0586	CGGCCCACGCA
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	89	99	-	13.9483	7.67e-06	0.0586	CGGCCCACGCA
SNAI2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	5	13	-	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	36	44	-	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	96	104	-	13.0698	7.67e-06	0.433	GACAGGTGC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	5	13	+	12.2909	7.67e-06	0.237	GTGCCCACT
HIC2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	11	19	+	12.2909	7.67e-06	0.237	GTGCCCACT
HIC2	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	27	35	+	12.2909	7.67e-06	0.237	GTGCCCACT
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	13	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	13	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	20	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	22	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	26	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	26	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	26	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	26	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	13	21	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	35	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	38	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	38	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	24	32	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	43	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	32	40	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	53	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	53	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	56	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	56	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	56	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	56	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	56	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	57	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	57	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	58	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	58	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	43	51	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	47	55	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	50	58	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	50	58	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	50	58	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	50	58	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	70	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	72	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	62	70	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	83	+	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	80	88	-	14.9663	7.67e-06	0.0939	GCCACGTGA
Creb3l2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	102	110	-	14.9663	7.67e-06	0.0939	GCCACGTGA
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	36	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	36	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	36	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	36	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	36	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	79	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	79	+	13.0698	7.67e-06	0.433	GACAGGTGC
SNAI2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	110	+	13.0698	7.67e-06	0.433	GACAGGTGC
HIC2	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	80	88	-	12.2909	7.67e-06	0.237	GTGCCCACT
HIC2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	96	104	-	12.2909	7.67e-06	0.237	GTGCCCACT
THAP1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	21	29	+	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	33	41	+	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	33	41	+	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	33	41	+	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	33	41	+	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	29	37	-	11.4474	7.67e-06	0.192	CTGCCCTCA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	34	42	-	11.4474	7.67e-06	0.192	CTGCCCTCA
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	72	+	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	72	+	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	72	+	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	72	+	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	72	+	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
EGR4	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	43	58	-	13.9818	7.67e-06	0.03	TCCCGCCCAGGCAACA
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	12	+	13.8211	7.67e-06	0.00936	TCCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	62	72	+	13.8211	7.67e-06	0.00936	TCCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	62	72	+	13.8211	7.67e-06	0.00936	TCCACGCCCCT
MAFG	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	10	30	-	13.7143	7.68e-06	0.576	GAGGCGCTGACGCAGCAGCGT
MAFG	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	85	105	+	13.7143	7.68e-06	0.576	GAGGCGCTGACGCAGCAGCGT
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	17	31	+	13.0395	7.68e-06	0.0875	ACACTGAGTCAGCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	84	98	-	13.0395	7.68e-06	0.0875	ACACTGAGTCAGCGG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	84	98	-	13.0395	7.68e-06	0.0875	ACACTGAGTCAGCGG
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	17	30	-	14.25	7.68e-06	0.00648	CCTCCTCCGCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	31	44	+	14.25	7.68e-06	0.00648	CCTCCTCCGCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	71	84	-	14.25	7.68e-06	0.00648	CCTCCTCCGCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	87	100	+	14.25	7.68e-06	0.00648	CCTCCTCCGCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	83	96	-	14.25	7.68e-06	0.00648	CCGCCACCGACGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	13.9455	7.68e-06	0.0567	GCCGGAAGTG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	14.2909	7.68e-06	0.0969	AACACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	14.2909	7.68e-06	0.0969	AACACGTGCC
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	28	42	-	13.8559	7.68e-06	0.124	TTGGGAAAGAGGTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	1	15	+	4.14286	7.69e-06	0.629	CGGGGCCTGAGGTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	56	70	-	4.14286	7.69e-06	0.629	CGGGGCCTGAGGTCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	24	37	+	13.5152	7.69e-06	0.198	CTGCCACGTGCGCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	28	41	-	13.5152	7.69e-06	0.198	CTGCCACGTGCGCA
Zfx	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	55	68	+	14.5606	7.69e-06	0.0186	GGGCGCTAGGCCTC
Zfx	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	47	60	-	14.5606	7.69e-06	0.0186	GGGCGCTAGGCCTC
TFCP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	85	94	+	13.8333	7.7e-06	1	CAACCGGTTT
TFCP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	85	94	+	13.8333	7.7e-06	1	CAACCGGTTT
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	22	38	+	9.09091	7.7e-06	0.456	CGTCCCGGATGGCCTCG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	22	38	+	9.09091	7.7e-06	0.456	CGTCCCGGATGGCCTCG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	54	70	+	9.09091	7.7e-06	0.456	CGTCCCGGATGGCCTCG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	54	70	+	9.09091	7.7e-06	0.456	CGTCCCGGATGGCCTCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	+	14.0364	7.7e-06	0.0893	CCCCCCCAGGCA
FOS	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	-	14.9574	7.7e-06	0.157	ACTGACTCATT
FOS	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	-	14.9574	7.7e-06	0.157	GATGACTCATC
FOS	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	+	14.9574	7.7e-06	0.157	ACTGACTCATT
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	20	30	-	14.7308	7.71e-06	0.172	AAGATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	33	43	+	14.7308	7.71e-06	0.172	TAAATGACTCA
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	31	41	-	14.7308	7.71e-06	0.172	AGTATGACTCA
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	59	69	-	14.7308	7.71e-06	0.172	TAAATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	72	82	-	14.7308	7.71e-06	0.172	TAAATGACTCA
MTF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	14	27	+	11.9756	7.71e-06	0.5	TCCGCACCCGGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	14	27	+	11.9756	7.71e-06	0.5	TCCGCACCCGGCCC
MTF1	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	88	101	-	11.9756	7.71e-06	0.5	TCCGCACCCGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	27	41	-	14.3103	7.71e-06	0.00365	GCACCGCCTCCCTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	27	41	-	14.3103	7.71e-06	0.00365	GCACCGCCTCCCTCG
SP2	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	64	+	14.3103	7.71e-06	0.00365	GCCCCTCCCTCCTTC
SP2	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	51	65	-	14.3103	7.71e-06	0.00365	GCCCCTCCCTCCTTC
SP2	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	74	88	+	14.3103	7.71e-06	0.00365	GCACCGCCTCCCTCG
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	46	-	14.4898	7.71e-06	0.0686	GTCACGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	46	-	14.4898	7.71e-06	0.0686	GTCACGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	87	+	14.4898	7.71e-06	0.0686	GTCACGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	87	+	14.4898	7.71e-06	0.0686	GTCACGTGACA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	26	36	+	13.5091	7.71e-06	0.0953	ATCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	26	36	+	13.5091	7.71e-06	0.0953	ATCCGGAAGTT
ELF5	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	87	97	+	13.5091	7.71e-06	0.0953	AAGCGGAAGTG
ELF5	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	92	102	+	13.5091	7.71e-06	0.0953	AGGCGGAAGTA
ELF5	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	28	-	13.5091	7.71e-06	0.0953	AAGCGGAAGTG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	21	35	+	14.6154	7.71e-06	0.0699	AGTCTGACCAATGAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	21	35	+	14.6154	7.71e-06	0.0699	AGTCTGACCAATGAG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	+	11.9429	7.71e-06	0.0785	CGTTGCTATGGCGCCC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	+	11.9429	7.71e-06	0.0785	CGTTGCTATGGCGCCC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	+	11.9429	7.71e-06	0.0785	CGTTGCTATGGCGCCC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	+	11.9429	7.71e-06	0.0785	CGTTGCTATGGCGCCC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	+	11.9429	7.71e-06	0.0785	CGTTGCTATGGCGCCC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	86	100	-	14.7021	7.71e-06	0.254	GGAAATGATGTCAGA
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	15	29	+	14.7021	7.71e-06	0.254	GGAAATGATGTCAGA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	15	29	+	14.7021	7.71e-06	0.254	GGAAATGATGTCAGA
ATF7	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	28	41	+	13.7571	7.72e-06	0.0782	TGCTGACGTCATCT
ATF7	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	26	39	-	13.7571	7.72e-06	0.0782	TGCTGACGTCATCT
ATF7	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	76	89	+	13.7571	7.72e-06	0.0782	TGCTGACGTCATCT
ELF1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	54	65	+	14.2	7.72e-06	0.0563	AAACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	61	-	14.2	7.72e-06	0.0563	AAACCGGAAGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	61	-	14.2	7.72e-06	0.0563	AAACCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	61	-	14.2	7.72e-06	0.0563	AAACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	61	-	14.2	7.72e-06	0.0563	AAACCGGAAGCA
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	+	14.4483	7.72e-06	0.049	AGCCCGGCGGGCG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	-	14.4483	7.72e-06	0.049	AGCCCGGCGGGCG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	89	103	+	13.0263	7.72e-06	0.0875	TTCCTGACTCGGCAC
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	89	103	+	13.0263	7.72e-06	0.0875	TTCCTGACTCGGCAC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	89	103	+	13.0263	7.72e-06	0.0875	TTCCTGACTCGGCAC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	12	26	-	13.0263	7.72e-06	0.0875	TTCCTGACTCGGCAC
HES7	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	17	-	10.7069	7.72e-06	0.171	CGGCACGTGCGC
HES7	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	40	-	10.7069	7.72e-06	0.171	CGGCACGTGCGC
HES7	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	75	86	+	10.7069	7.72e-06	0.171	CGGCACGTGCGC
HES7	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	98	109	+	10.7069	7.72e-06	0.171	CGGCACGTGCGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	8	22	+	12.5345	7.72e-06	0.0253	CACCGCCTCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	8	22	+	12.5345	7.72e-06	0.0253	CACCGCCTCCGCCCT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	+	15	7.73e-06	0.0853	GATGAGTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	-	15	7.73e-06	0.0853	TGTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	-	15	7.73e-06	0.0853	TGTGACTCAGC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	-	15	7.73e-06	0.0853	TGTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	-	15	7.73e-06	0.0853	TGTGACTCAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	17	34	+	-4.42105	7.73e-06	0.02	GAGGGAAAGGGAGGCGGG
KLF16	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	16	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	17	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	17	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	28	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	28	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	30	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	40	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	51	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	51	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	58	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	60	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	60	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	64	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	72	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	80	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	82	+	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	31	41	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	33	43	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	33	43	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	51	61	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	55	65	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	56	66	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	56	66	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	57	67	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	64	74	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	75	85	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	98	108	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	99	109	-	14.3621	7.74e-06	0.00825	CCCCCTCCCCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	-	14.4918	7.74e-06	0.0457	TGCCCCGCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	-	14.4918	7.74e-06	0.0457	TGCCCCGCCGGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	6	26	+	13.5714	7.74e-06	0.00543	GGGGGCGGGGGGCAGAGAAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	2	22	-	13.5714	7.74e-06	0.00543	GGGAGAGCGAAGGAGGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	31	51	-	13.5714	7.74e-06	0.00543	GAAGGATAGGGTCGGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	31	51	-	13.5714	7.74e-06	0.00543	GAAGGATAGGGTCGGGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	89	109	-	13.5714	7.74e-06	0.00543	GGGGGCGGGGGGCAGAGAAAG
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	68	82	+	14.3276	7.74e-06	0.232	GCGCCCAAGGTCACA
ELK4	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	3	13	+	14.5091	7.74e-06	0.0287	CCACTTCCTGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	25	-	14.5091	7.74e-06	0.0287	CCACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	71	-	14.5091	7.74e-06	0.0287	CCACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	71	-	14.5091	7.74e-06	0.0287	CCACTTCCTGT
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	41	+	14.4909	7.75e-06	0.0992	CGTGACGTCACT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	41	+	14.4909	7.75e-06	0.0992	CGTGACGTCACT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	41	+	14.4909	7.75e-06	0.0992	CGTGACGTCACT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	41	+	14.4909	7.75e-06	0.0992	CGTGACGTCACT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	-	14.1091	7.75e-06	0.0397	CGCCCCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	-	14.1091	7.75e-06	0.0397	CGCCCCCGGCG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	18	35	+	13.8415	7.75e-06	0.0564	CGAGCCGCGATTGGTCCG
NFYA	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	24	41	+	13.8415	7.75e-06	0.0564	CGGGCGGTGATTGGTAAA
EGR1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	32	45	+	14.2308	7.76e-06	0.00651	GCCACGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	57	70	+	14.2308	7.76e-06	0.00651	CTTCCGCCCTCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	57	70	+	14.2308	7.76e-06	0.00651	CTTCCGCCCTCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	57	70	+	14.2308	7.76e-06	0.00651	CTTCCGCCCTCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	81	94	+	14.2308	7.76e-06	0.00651	CTTCCGCCCTCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	70	83	-	14.2308	7.76e-06	0.00651	GCCACGCCTCCTCC
EGR4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	48	63	-	13.9636	7.76e-06	0.03	TTCCGCCCACGTCATG
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	42	56	+	13.6066	7.76e-06	0.208	GTGACTCAGCGTCCT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	42	56	+	13.6066	7.76e-06	0.208	GTGACTCAGCGTCCT
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	57	-	13.8429	7.77e-06	0.0745	CTGGGTCGGAGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	57	-	13.8429	7.77e-06	0.0745	CTGGGTCGGAGGTTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	57	-	13.8429	7.77e-06	0.0745	CTGGGTCGGAGGTTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	57	-	13.8429	7.77e-06	0.0745	CTGGGTCGGAGGTTA
RXRA::VDR	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	79	93	-	11.8991	7.77e-06	1	GGGTAATGGGGTACA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	12	26	+	13.4426	7.77e-06	0.0286	GACCCCGCCCCCAAC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	12	26	+	13.4426	7.77e-06	0.0286	GACCCCGCCCCCAAC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	12	26	+	13.4426	7.77e-06	0.0286	GACCCCGCCCCCAAC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	12	26	+	13.4426	7.77e-06	0.0286	GACCCCGCCCCCAAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	29	42	+	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	29	42	+	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	29	42	+	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	29	42	+	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	85	98	-	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	85	98	-	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	85	98	-	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	85	98	-	14.6731	7.78e-06	0.118	CGTAGGTGACTCAT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	16	29	-	14.5455	7.79e-06	0.0187	GGGAGCCGGGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	30	43	+	14.5455	7.79e-06	0.0187	GTGGGCGGGGCCTT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	10	24	+	13.1571	7.79e-06	0.0867	GACGCCCCGCTGCTG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	52	66	+	13.1571	7.79e-06	0.0867	GACGCCCCGCTGCTG
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	11	20	+	14.4045	7.79e-06	0.864	AACTAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	11	20	+	14.4045	7.79e-06	0.864	AACTAGGTCA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	+	14.2692	7.79e-06	0.0588	AGCCTGGGGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	-	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	+	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	-	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	-	14.3793	7.79e-06	0.0736	GGCAGCTGCG
NHLH1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	-	14.3793	7.79e-06	0.0736	GGCAGCTGCG
Znf423	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	49	63	-	10.618	7.8e-06	0.163	GGAACCCCGGGGTTC
LEF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	27	41	+	13.5484	7.8e-06	1	CAAGATCAAAACGAA
LEF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	92	106	+	13.5484	7.8e-06	1	CAAGATCAAAACGAA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	43	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	43	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	63	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	63	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	82	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	82	-	14.6531	7.8e-06	0.0487	GGCACGTGACT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	+	14.431	7.8e-06	0.049	TGCCTTGGAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	+	14.431	7.8e-06	0.049	TGCCTTGGAGGCA
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	22	39	+	11.3448	7.8e-06	0.0883	TAGCCACGCCTACTTCCG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	22	39	+	11.3448	7.8e-06	0.0883	TAGCCACGCCTACTTCCG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	22	39	+	11.3448	7.8e-06	0.0883	TAGCCACGCCTACTTCCG
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	22	39	+	11.3448	7.8e-06	0.0883	TAGCCACGCCTACTTCCG
INSM1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	64	75	-	14.5816	7.8e-06	0.11	GGGCTGGGGGCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	1	12	-	14.1184	7.81e-06	0.0134	ACCACGCCCGCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	18	32	+	14.2931	7.81e-06	0.00365	GCCCCGCCCACAAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	14	28	-	14.2931	7.81e-06	0.00365	GCTCCTCCCCTCGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	14	28	-	14.2931	7.81e-06	0.00365	GCTCCTCCCCTCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	14	28	-	14.2931	7.81e-06	0.00365	GCTCCTCCCCTCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	14	28	-	14.2931	7.81e-06	0.00365	GCTCCTCCCCTCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	31	45	+	14.2931	7.81e-06	0.00365	CTCCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	31	45	+	14.2931	7.81e-06	0.00365	CTCCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	25	39	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	25	39	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	25	39	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	25	39	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	26	40	-	14.2931	7.81e-06	0.00365	GCCCCTCCTCTATCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	30	44	-	14.2931	7.81e-06	0.00365	CCCCCTCCCACCCCG
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	35	49	-	14.2931	7.81e-06	0.00365	ACCCCGCCCCGCCCA
SP2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	49	63	+	14.2931	7.81e-06	0.00365	GCCCCTCCTCTATCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	47	61	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	47	61	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	47	61	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	47	61	-	14.2931	7.81e-06	0.00365	ACTCCGCCCCCACCG
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	80	+	14.2931	7.81e-06	0.00365	ACCCCGCCCCGCCCA
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	52	66	-	14.2931	7.81e-06	0.00365	GCCCCTCCTCTATCC
SP2	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	75	89	+	14.2931	7.81e-06	0.00365	GCCCCTCCTCTATCC
RUNX1	WILDTYPE__Antisense.noflip.NA__chr2:74612556..74612670,+__446.1.0.0	103	113	-	13.6207	7.81e-06	0.215	GGCTGTGGCTT
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	28	42	-	13	7.81e-06	0.0875	ACTGTGACTCAGCTT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	28	42	-	13	7.81e-06	0.0875	ACTGTGACTCAGCTT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	28	42	-	13	7.81e-06	0.0875	ACTGTGACTCAGCTT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	28	42	-	13	7.81e-06	0.0875	ACTGTGACTCAGCTT
ELF4	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	13	24	+	13.918	7.81e-06	0.0543	AAACAGGAAGTG
ELF4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	75	86	+	13.918	7.81e-06	0.0543	AAACAGGAAGTG
ELF4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	40	-	13.918	7.81e-06	0.0543	AAACAGGAAGTG
ELF4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	67	-	13.918	7.81e-06	0.0543	AAACAGGAAGTG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	27	40	+	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	27	40	+	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	72	85	+	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	30	43	-	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	30	43	-	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	75	88	-	13.7931	7.81e-06	0.0152	GGCTCCGCCCCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	29	45	+	10.9273	7.81e-06	0.00902	CTGGCCCCACCCACCCG
SP4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	34	50	+	10.9273	7.81e-06	0.00902	CTGGCCCCACCCACCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	65	81	-	10.9273	7.81e-06	0.00902	CTGGCCCCACCCACCCG
SP4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	70	86	-	10.9273	7.81e-06	0.00902	CTGGCCCCACCCACCCG
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	97	107	+	14.5714	7.82e-06	0.687	TCCTTATCTAT
Gata1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	97	107	+	14.5714	7.82e-06	0.687	TCCTTATCTAT
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	46	56	-	14.2727	7.82e-06	0.721	AGCCTCTCAGG
YY2	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	45	55	+	14.2121	7.82e-06	0.269	GCCCGCCATTG
YY2	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	76	86	-	14.2121	7.82e-06	0.269	GCCCGCCATTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	3	16	+	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	3	16	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	99	112	+	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	99	112	-	11.7551	7.83e-06	0.0605	GGGGCCTAGGGAGG
Crem	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	45	+	13.918	7.83e-06	0.153	CATGACGTCA
Crem	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	50	+	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	19	28	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	19	28	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	31	40	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	31	40	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	31	40	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	31	40	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	31	40	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	65	74	-	13.918	7.83e-06	0.153	CATGACGTCA
Crem	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	70	79	-	13.918	7.83e-06	0.153	CATGACGTCA
DBP	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	+	14.6038	7.83e-06	1	CATTACGTAATT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	15	35	-	13.551	7.83e-06	0.00545	GGGGGCGGGGAGTAAAAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	40	60	+	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	40	60	+	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	43	63	+	13.551	7.83e-06	0.00545	GGGGGTGGGGAGAGGGAGGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	44	64	+	13.551	7.83e-06	0.00545	GGGGGCGGGGAGTAAAAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	24	44	-	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	24	44	-	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
ZNF263	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	71	91	+	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
ZNF263	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	55	75	-	13.551	7.83e-06	0.00545	AGAGGCGCAGCGGGAGGGGGT
Klf12	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	24	38	+	13.4262	7.83e-06	0.0286	GGCCCCGCCCCAACC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	50	64	+	13.4262	7.83e-06	0.0286	GGCCCCGCCCCTCGC
Klf12	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	77	91	-	13.4262	7.83e-06	0.0286	GGCCCCGCCCCAACC
REL	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	1	10	+	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	59	68	+	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	59	68	+	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	59	68	+	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	59	68	+	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	47	56	-	13.8485	7.84e-06	0.16	TGGGCTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	105	114	-	13.8485	7.84e-06	0.16	TGGGCTTTCC
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	22	-	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	22	-	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	22	-	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	22	-	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	42	55	+	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	73	-	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	93	106	+	10.3091	7.84e-06	0.105	AAATACAGGAAGTC
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	18	32	-	13.1429	7.84e-06	0.0867	GCCCACCTGTCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	18	32	-	13.1429	7.84e-06	0.0867	GCCCACCTGTCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	10	24	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	10	24	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	10	24	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	10	24	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	55	69	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	67	81	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	67	81	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	67	81	+	13.1429	7.84e-06	0.0867	CCCGCCCCGCCGCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	12	27	-	13.9455	7.84e-06	0.03	CACCGCCCACGCCGGG
EGR4	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	12	27	-	13.9455	7.84e-06	0.03	GCCTGCCCACGCGCTC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	12	27	-	13.9455	7.84e-06	0.03	CGCCGCCCACCCCAAA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	86	101	+	13.9455	7.84e-06	0.03	CGCCGCCCACCCCAAA
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	88	103	+	13.9455	7.84e-06	0.03	GCCTGCCCACGCGCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	88	103	+	13.9455	7.84e-06	0.03	GCCTGCCCACGCGCTC
CENPB	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	16	30	+	14.1538	7.85e-06	0.793	CCCGGATCCGGCGCA
CENPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	85	99	-	14.1538	7.85e-06	0.793	CCCGGATCCGGCGCA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	85	99	-	14.1538	7.85e-06	0.793	CCCGGATCCGGCGCA
CENPB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	85	99	-	14.1538	7.85e-06	0.793	CCCGGATCCGGCGCA
CENPB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	85	99	-	14.1538	7.85e-06	0.793	CCCGGATCCGGCGCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	9	19	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	9	19	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	9	19	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	10	20	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	24	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	4	14	-	14.5577	7.85e-06	0.00445	CCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	10	20	-	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	10	20	-	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	22	32	+	14.5577	7.85e-06	0.00445	CCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	22	32	+	14.5577	7.85e-06	0.00445	CCCCCGCCTCT
SP1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	12	22	-	14.5577	7.85e-06	0.00445	CCCCCGCCTCT
SP1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	12	22	-	14.5577	7.85e-06	0.00445	CTCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	34	44	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	34	44	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	25	35	-	14.5577	7.85e-06	0.00445	ATCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	25	35	-	14.5577	7.85e-06	0.00445	ATCCCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	103	+	14.5577	7.85e-06	0.00445	CTCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	95	105	+	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	95	105	-	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	104	114	-	14.5577	7.85e-06	0.00445	ACCCCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	90	103	-	14.2115	7.85e-06	0.00658	CCGCCACCCCTGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	49	59	+	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	49	59	+	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	49	59	+	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	49	59	+	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	50	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	50	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	50	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	50	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	72	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	72	-	14.4727	7.86e-06	0.0287	GGGCTTCCGGC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	53	+	10.5955	7.86e-06	0.163	GGCCGCCAGGGGTCC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	53	+	10.5955	7.86e-06	0.163	GGCCGCCAGGGGTCC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	53	+	10.5955	7.86e-06	0.163	GGCCGCCAGGGGTCC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	53	+	10.5955	7.86e-06	0.163	GGCCGCCAGGGGTCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	12	28	+	10.9091	7.86e-06	0.00902	CATGCCCCGCCCGCCCC
SP4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	27	43	+	10.9091	7.86e-06	0.00902	CTCGCCCCGCCTCCTGG
SP4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	31	47	-	10.9091	7.86e-06	0.00902	TCGGCCCCGCCCAGATC
SP4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	68	84	+	10.9091	7.86e-06	0.00902	TCGGCCCCGCCCAGATC
SP4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	72	88	-	10.9091	7.86e-06	0.00902	CTCGCCCCGCCTCCTGG
INSM1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	16	27	-	14.5714	7.87e-06	0.11	GGCCTGGGGGTG
MAFF	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	93	110	-	14.2444	7.87e-06	0.87	CTCGTCTCAGCAGTTTCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	80	97	-	-4.47368	7.88e-06	0.02	GGGGGAAAAGAAGGCAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	80	97	-	-4.47368	7.88e-06	0.02	GGGGGAAAAGAAGGCAAG
RELA	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	5	14	+	14.8469	7.88e-06	0.168	CGGAGTTTCC
RELA	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	36	45	+	14.8469	7.88e-06	0.168	CGGAGTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	70	79	-	14.8469	7.88e-06	0.168	CGGAGTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	70	79	-	14.8469	7.88e-06	0.168	CGGAGTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	70	79	-	14.8469	7.88e-06	0.168	CGGAGTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	70	79	-	14.8469	7.88e-06	0.168	CGGAGTTTCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	+	14.4545	7.89e-06	0.0612	AGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	+	14.4545	7.89e-06	0.0612	AGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	-	14.4545	7.89e-06	0.0612	TGCCCGAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	-	14.4545	7.89e-06	0.0612	TGCCCGAGGCT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	29	43	-	14.0545	7.89e-06	0.0974	CCCGCCCCGCTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	29	43	-	14.0545	7.89e-06	0.0974	CCCGCCCCGCTGCGC
EHF	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	43	-	14.2131	7.9e-06	0.0848	GCCCCGGAAGTA
E2F4	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	68	78	+	14.8793	7.9e-06	0.0262	GCGCGGGAGGA
E2F4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	95	105	+	14.8793	7.9e-06	0.0262	GCGCGGGAGGA
CTCF	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	6	24	+	13.2459	7.9e-06	0.0619	GGGCCTGTGGGGGGCGGGG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	67	85	-	13.2459	7.9e-06	0.0619	GGGCCTGTGGGGGGCGGGG
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	71	80	-	12.9032	7.9e-06	0.741	TACATTCCAC
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	71	80	-	12.9032	7.9e-06	0.741	TACATTCCAC
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	71	80	-	12.9032	7.9e-06	0.741	TACATTCCAC
TEAD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	71	80	-	12.9032	7.9e-06	0.741	TACATTCCAC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	-	14.4138	7.9e-06	0.049	TGCCCCGCCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	-	14.4138	7.9e-06	0.049	TGCCCCGCCGGCA
SP3	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	13	+	13.7805	7.9e-06	0.00936	TCCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	22	+	13.7805	7.9e-06	0.00936	TCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	22	+	13.7805	7.9e-06	0.00936	TCCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	22	+	13.7805	7.9e-06	0.00936	TCCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	22	+	13.7805	7.9e-06	0.00936	TCCCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	48	58	-	13.7805	7.9e-06	0.00936	CCCCCGCCCAT
NFE2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	30	40	+	14.551	7.9e-06	0.14	CATGACTCACT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	31	41	+	14.551	7.9e-06	0.14	CATGACTCACT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	66	76	-	14.551	7.9e-06	0.14	CATGACTCACT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	-	14.1923	7.9e-06	0.0588	CGCCGCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	-	14.1923	7.9e-06	0.0588	CGCCGCAGGCT
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	15	25	+	14.6552	7.9e-06	0.347	AAACCACAGCT
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	101	111	-	14.6552	7.9e-06	0.347	AAACCACAGCT
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	101	111	-	14.6552	7.9e-06	0.347	AAACCACAGCT
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	31	41	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	31	41	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.1.0	35	45	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	35	45	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	31	41	-	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	45	55	-	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	66	76	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	66	76	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	74	84	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	74	84	+	14.4545	7.9e-06	0.00535	GCGCCTGCCCC
NFYA	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	15	32	+	13.8049	7.9e-06	0.057	GCAGAGGTGATTGGCCGG
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	14	28	-	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	14	28	-	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	14	28	-	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	14	28	-	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	49	63	+	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	49	63	+	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	49	63	+	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	49	63	+	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	49	63	+	13.9351	7.91e-06	0.291	AGTTAAACATTTACA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	-	14.0182	7.91e-06	0.0893	AGCCCGCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	-	14.0182	7.91e-06	0.0893	AGCCCGCGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	+	14.0182	7.91e-06	0.0893	AGCCCGCGGGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	18	+	14.2759	7.91e-06	0.00368	GCCCCGCCCCAGGTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	18	+	14.2759	7.91e-06	0.00368	GCCCCGCCCCAGGTT
SP2	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	34	+	14.2759	7.91e-06	0.00368	GCCCCTCCTCCCGAT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	47	61	+	14.2759	7.91e-06	0.00368	CGCCCTCCCCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	47	61	+	14.2759	7.91e-06	0.00368	CGCCCTCCCCTGCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	81	95	-	14.2759	7.91e-06	0.00368	GCCCCTCCTCCCGAT
SP2	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	97	111	-	14.2759	7.91e-06	0.00368	GCCCCGCCCCAGGTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	22	38	+	10.8909	7.91e-06	0.00905	GACGCCCCTCCCCTTTT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	22	38	+	10.8909	7.91e-06	0.00905	GACGCCCCTCCCCTTTT
ELF3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	80	92	-	13.5517	7.92e-06	0.108	GAGCCGGAAGTTC
ELF3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	23	35	+	13.5517	7.92e-06	0.108	GAGCCGGAAGTTC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	27	41	-	12.4655	7.92e-06	0.0253	CCACCCCCACGCTCA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	36	50	+	12.4655	7.92e-06	0.0253	CCACCCCCACGCTCA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	91	105	+	12.4655	7.92e-06	0.0253	TCCCGCCCTCGCATG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	91	105	+	12.4655	7.92e-06	0.0253	TCCCGCCCTCGCATG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	39	51	+	14.4426	7.92e-06	0.0462	CGCCCTAAGGGCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	17	31	-	13.8198	7.93e-06	0.124	CAGGGACAGGGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	17	31	-	13.8198	7.93e-06	0.124	CAGGGACAGGGGGCA
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	12	32	+	13.5306	7.93e-06	0.00546	GGAAAAGGGGAGGTGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	16	36	+	13.5306	7.93e-06	0.00546	AGGGGTGGAGGCGGAGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	30	50	+	13.5306	7.93e-06	0.00546	GGAGACGGGGCGGGGGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	30	50	+	13.5306	7.93e-06	0.00546	GGAGACGGGGCGGGGGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	19	39	-	13.5306	7.93e-06	0.00546	GGGGCAGGCAGGGCCGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	29	49	-	13.5306	7.93e-06	0.00546	GGAGACGGGGCGGGGGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	29	49	-	13.5306	7.93e-06	0.00546	GGAGACGGGGCGGGGGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	47	67	-	13.5306	7.93e-06	0.00546	AAGGCAGGAGGGGGTAGAAGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	84	104	+	13.5306	7.93e-06	0.00546	GGAGGCGCCGAAGGTGGAGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	77	97	-	13.5306	7.93e-06	0.00546	GGAGGCAGGAGTGGAGAGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	79	99	-	13.5306	7.93e-06	0.00546	AGGGGTGGAGGCGGAGGGGTG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	83	103	-	13.5306	7.93e-06	0.00546	GGAAAAGGGGAGGTGGGAGGG
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	+	9.73469	7.93e-06	0.466	TGTCAGATGTCA
EGR1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	13	26	-	14.1923	7.93e-06	0.00662	TCACCACCCACTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	45	58	+	14.1923	7.93e-06	0.00662	TCACCACCCACTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	64	+	14.1923	7.93e-06	0.00662	GCCCCTCCTCCTCG
EGR1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	57	70	-	14.1923	7.93e-06	0.00662	TCACCACCCACTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	89	102	+	14.1923	7.93e-06	0.00662	TCACCACCCACTCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	63	77	+	14.2424	7.94e-06	0.0419	CTCTCGCGGTCATTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	63	77	+	14.2424	7.94e-06	0.0419	CTCTCGCGGTCATTC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	34	53	-	10.2661	7.94e-06	0.0376	CCACCCCCCAGCCGCCGAGC
NR2C2	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	23	37	+	13.8	7.94e-06	0.0745	CGAGGGCAGAGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	78	92	-	13.8	7.94e-06	0.0745	CGAGGGCAGAGGCGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	78	92	-	13.8	7.94e-06	0.0745	CGAGGGCAGAGGCGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	78	92	-	13.8	7.94e-06	0.0745	CGAGGGCAGAGGCGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	78	92	-	13.8	7.94e-06	0.0745	CGAGGGCAGAGGCGG
EGR4	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	14	29	+	13.9273	7.94e-06	0.03	ATCCGCCCGCCCACGT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	28	43	-	13.9273	7.94e-06	0.03	CACCGCCCCCTCACTT
EGR4	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	32	47	-	13.9273	7.94e-06	0.03	ATCCGCCCGCCCACGT
EGR4	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	86	101	-	13.9273	7.94e-06	0.03	ATCCGCCCGCCCACGT
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	-	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	-	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	+	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	+	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	+	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	+	14.8936	7.95e-06	0.157	GATGACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	+	14.8936	7.95e-06	0.157	GATGACTCATG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	60	74	+	13.1143	7.95e-06	0.0867	CCCCCCCCGCCGCTG
USF1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	28	38	-	14.449	7.96e-06	0.0686	ACCATGTGACT
USF1	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	72	82	-	14.449	7.96e-06	0.0686	ACCATGTGACT
USF1	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	33	43	+	14.449	7.96e-06	0.0686	ACCATGTGACT
USF1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	77	87	+	14.449	7.96e-06	0.0686	ACCATGTGACT
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	7	19	-	14.4098	7.96e-06	0.283	ACGTGACGCAATC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	7	19	-	14.4098	7.96e-06	0.283	ACGTGACGCAATC
ID4	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	21	-	14	7.96e-06	0.389	CACACCTGTC
BHLHE40	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	15.1923	7.96e-06	0.1	GGCACGTGAC
BHLHE40	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	15.1923	7.96e-06	0.1	GGCACGTGAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	28	37	+	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	28	37	+	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	20	29	-	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	29	-	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	31	-	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	35	44	+	14.4184	7.96e-06	0.00743	TGGGCGTGGT
Klf4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	80	-	14.4184	7.96e-06	0.00743	TGGGCGTGGT
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	52	63	-	14.5408	7.96e-06	0.11	GGCCAGGGGCCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	93	104	-	14.5408	7.96e-06	0.11	GGCCAGGGGCCG
ELK4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	23	33	+	14.4364	7.97e-06	0.0287	CCGCTTCCGCC
ELK4	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	27	37	-	14.4364	7.97e-06	0.0287	CCGCTTCCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	60	70	+	14.4364	7.97e-06	0.0287	CCGCTTCCGCC
ELK4	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	78	88	+	14.4364	7.97e-06	0.0287	CCGCTTCCGCC
ELK4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	82	92	-	14.4364	7.97e-06	0.0287	CCGCTTCCGCC
Zfx	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	24	37	+	14.5152	7.97e-06	0.0191	GTAGCCGCGGCCTT
Creb5	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	32	+	14.4182	7.97e-06	0.0992	GGTGACGTCACA
Creb5	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	94	-	14.4182	7.97e-06	0.0992	GGTGACGTCACA
GLIS2	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	19	32	-	13.2623	7.98e-06	0.176	CGCCCCCAGCGGCG
GLIS2	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	83	96	+	13.2623	7.98e-06	0.176	CGCCCCCAGCGGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	77	-	13.8361	7.99e-06	0.0543	AACGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	77	-	13.8361	7.99e-06	0.0543	AACGCGGAAGCG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	32	42	+	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	32	42	+	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	32	42	+	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	32	42	+	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	25	-	14.8727	7.99e-06	0.0939	AGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	25	-	14.8727	7.99e-06	0.0939	AGATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	85	95	-	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	85	95	-	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	85	95	-	14.8727	7.99e-06	0.0939	AGGTGACTCAT
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	85	95	-	14.8727	7.99e-06	0.0939	AGGTGACTCAT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	4	14	+	14.8621	7.99e-06	0.0262	CGGCGGGAGGC
E2F4	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	12	22	-	14.8621	7.99e-06	0.0262	CGGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	62	72	+	14.8621	7.99e-06	0.0262	CGGCGGGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	62	72	+	14.8621	7.99e-06	0.0262	CGGCGGGAGGC
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	93	103	+	14.8621	7.99e-06	0.0262	CGGCGGGAGGC
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	18	30	+	14.3934	8e-06	0.283	GGGTGACGTAATC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	18	30	+	14.3934	8e-06	0.283	GGGTGACGTAATC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	50	60	+	14.4262	8e-06	0.0269	CCGGAAGTACG
Gabpa	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	55	65	-	14.4262	8e-06	0.0269	CCGGAAGTACG
SP2	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	59	+	14.2586	8e-06	0.00372	GCCCCACCCTCTGTC
SP2	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	33	47	-	14.2586	8e-06	0.00372	TCTCCGCCCCCCGGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	56	70	-	14.2586	8e-06	0.00372	GCCCCACCCTCTGTC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	61	71	-	14.6327	8e-06	0.0487	GTCATGTGGCT
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	93	103	-	14.6327	8e-06	0.0487	GTCATGTGGCT
USF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	93	103	-	14.6327	8e-06	0.0487	GTCATGTGGCT
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	96	107	+	14.3654	8e-06	0.0602	AAAAATGGCGCC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	96	107	+	14.3654	8e-06	0.0602	AAAAATGGCGCC
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	79	89	-	14.5192	8.01e-06	1	TGCAATACACA
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	22	38	+	12.0364	8.01e-06	0.48	CGTCCCGGATGGCCTCG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	22	38	+	12.0364	8.01e-06	0.48	CGTCCCGGATGGCCTCG
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	54	70	+	12.0364	8.01e-06	0.48	CGTCCCGGATGGCCTCG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	54	70	+	12.0364	8.01e-06	0.48	CGTCCCGGATGGCCTCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	4	17	+	13.7414	8.01e-06	0.0152	AGCCACGCCCCGTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	4	17	+	13.7414	8.01e-06	0.0152	AGCCACGCCCCGTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	4	17	+	13.7414	8.01e-06	0.0152	AGCCACGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	4	17	+	13.7414	8.01e-06	0.0152	AGCCACGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	4	17	+	13.7414	8.01e-06	0.0152	AGCCACGCCCCGTC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	29	45	+	10.8545	8.01e-06	0.00914	TTGGCCCCACCCACCCG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	65	81	-	10.8545	8.01e-06	0.00914	TTGGCCCCACCCACCCG
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	42	56	-	13.1	8.01e-06	0.0867	TCCTCCCCGCTGCTC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	13	27	+	13.1	8.01e-06	0.0867	TCCTCCCCGCTGCTC
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	76	86	+	14.2931	8.01e-06	0.555	TCCTGTTTTCT
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	89	99	+	14.2931	8.01e-06	0.555	TCCTGTTTTCT
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	17	27	-	14.2931	8.01e-06	0.555	TCCTGTTTTCT
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	26	36	-	14.2931	8.01e-06	0.555	TCCTGTTTTCT
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	26	36	-	14.2931	8.01e-06	0.555	TCCTGTTTTCT
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	29	39	-	14.2931	8.01e-06	0.555	TCCTGTTTTCT
ZBTB33	WILDTYPE__Antisense.flip.sense__chr14:61789501..61789615,-__294.1.0.0	3	17	-	14.2273	8.01e-06	0.0419	TTCTCGCGAGTATTA
ZBTB33	FLIPPED__Antisense.flip.antisense__chr14:61789501..61789615,+__2365.1.0.0	98	112	+	14.2273	8.01e-06	0.0419	TTCTCGCGAGTATTA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	11	23	-	14.2787	8.02e-06	0.326	CTGTCTGCCAGCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	11	23	-	14.2787	8.02e-06	0.326	CTGTCTGCCAGCA
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	11	23	-	14.2787	8.02e-06	0.326	CTGTCTGCCAGCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	11	23	-	14.2787	8.02e-06	0.326	CTGTCTGCCAGCA
EGR3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	16	30	-	12.431	8.02e-06	0.0253	CCCCGCCCCCCCGCC
EGR3	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	99	113	-	12.431	8.02e-06	0.0253	CCCCGCCCCCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	2	16	+	12.431	8.02e-06	0.0253	CCCCGCCCCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	2	16	+	12.431	8.02e-06	0.0253	CCCCGCCCCCCCGCC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	85	99	+	12.431	8.02e-06	0.0253	CCCCGCCCCCCCGCC
INSM1	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	8	19	+	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	19	30	+	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	19	30	+	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	19	30	+	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
INSM1	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	11	22	-	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
INSM1	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	93	104	+	14.5204	8.02e-06	0.11	GGGAAGGGGGCG
NFYB	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	11	25	+	14.5577	8.02e-06	0.072	CCGCGCGCCAATGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	10	30	+	13.5102	8.03e-06	0.00548	AGGTGAGCAGCGAGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	25	45	+	13.5102	8.03e-06	0.00548	GGAGGAGCCTAAAGAAGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	25	45	+	13.5102	8.03e-06	0.00548	GGAGGAGCCTAAAGAAGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	41	61	+	13.5102	8.03e-06	0.00548	GGGGAAGGTGGAAAAGAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	41	61	+	13.5102	8.03e-06	0.00548	GGGGAAGGTGGAAAAGAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	30	50	-	13.5102	8.03e-06	0.00548	AGGGCAGGGGCGGAGAAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	30	50	-	13.5102	8.03e-06	0.00548	AGGGCAGGGGCGGAGAAGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	64	84	+	13.5102	8.03e-06	0.00548	GAATGAGGCAGTGGGTGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	64	84	+	13.5102	8.03e-06	0.00548	GAATGAGGCAGTGGGTGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	64	84	+	13.5102	8.03e-06	0.00548	GAATGAGGCAGTGGGTGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	64	84	+	13.5102	8.03e-06	0.00548	GAATGAGGCAGTGGGTGGAGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	85	105	-	13.5102	8.03e-06	0.00548	AGGTGAGCAGCGAGGGGAGGG
EGR1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	4	17	+	14.1731	8.03e-06	0.00665	TCTCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	35	48	+	14.1731	8.03e-06	0.00665	TCTCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	35	48	+	14.1731	8.03e-06	0.00665	TCTCCGCCCCTGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	41	54	-	14.1731	8.03e-06	0.00665	CCGCCACCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	61	74	+	14.1731	8.03e-06	0.00665	CCGCCACCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	61	74	+	14.1731	8.03e-06	0.00665	CCGCCACCGCCGCG
EGR1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	98	111	-	14.1731	8.03e-06	0.00665	TCTCCGCCCCTGCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	31	46	+	13.9091	8.03e-06	0.03	CCCCGCCCTCGCAGCC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14	8.04e-06	0.0647	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.3793	8.04e-06	0.0591	ACCGGAAGCA
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14	8.04e-06	0.0647	ACCGGAAGCA
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14	8.04e-06	0.0647	ACCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.3793	8.04e-06	0.0591	ACCGGAAGCA
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	21	40	-	10.2294	8.04e-06	0.0376	ACCGCCCCCAACCGCACAGC
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	23	42	-	10.2294	8.04e-06	0.0376	ACCGCCCCCAACCGCACAGC
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	73	92	+	10.2294	8.04e-06	0.0376	ACCGCCCCCAACCGCACAGC
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	75	94	+	10.2294	8.04e-06	0.0376	ACCGCCCCCAACCGCACAGC
XBP1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	12	25	+	14.0769	8.05e-06	0.446	ACAGACACGTCACG
KLF13	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	12	29	-	11.2586	8.05e-06	0.0888	GGGCCACGCCCACACCCT
KLF13	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	44	61	+	11.2586	8.05e-06	0.0888	GGGCCACGCCCACACCCT
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	32	47	+	10.2545	8.06e-06	0.169	TTGTTCAAAGTCCAGT
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.0.0	32	47	+	10.2545	8.06e-06	0.169	TTGTTCAAAGTCCAGT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	21	34	-	14.0328	8.06e-06	0.365	AGTCCCCAGGGCCT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	36	49	+	14.0328	8.06e-06	0.365	AGTCCCCAGGGCCT
SP1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	1	11	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	7	17	-	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	7	17	-	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	37	+	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	37	+	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	55	+	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	47	57	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	38	48	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	38	48	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	51	61	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	51	61	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	44	54	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	56	66	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	77	+	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	60	70	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	71	81	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	71	81	+	14.5385	8.06e-06	0.00451	GGCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	78	88	-	14.5385	8.06e-06	0.00451	GCCCCACCCTC
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	+	14.6727	8.06e-06	0.606	AACAGCTGGT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	15	26	-	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	15	26	-	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	44	+	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	44	+	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	44	-	13.4286	8.06e-06	0.0688	AATGACGTCAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	35	46	-	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	35	46	-	13.4286	8.06e-06	0.0688	TGTGACGTCACG
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	100	+	13.4286	8.06e-06	0.0688	TGTGACGTCACG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	54	68	-	13.0857	8.07e-06	0.0867	GACCCCCCGCCGTCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	54	68	-	13.0857	8.07e-06	0.0867	GACCCCCCGCCGTCG
MAFG	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	7	27	+	13.6327	8.07e-06	0.576	CATGAGCCTAGTCAGCAGAAT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	56	70	+	12.4138	8.07e-06	0.0253	CTCCGCCCACCCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	56	70	+	12.4138	8.07e-06	0.0253	CTCCGCCCACCCCCT
E2F6	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	22	32	-	14.7069	8.08e-06	0.0244	AGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	73	83	-	14.7069	8.08e-06	0.0244	AGGCGGGAACC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	73	83	-	14.7069	8.08e-06	0.0244	AGGCGGGAACC
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	43	53	+	14.7069	8.08e-06	0.0244	TGGCGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	43	53	+	14.7069	8.08e-06	0.0244	TGGCGGGAGAG
E2F6	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	83	93	+	14.7069	8.08e-06	0.0244	AGGCGGGAGCG
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	+	11.8286	8.08e-06	0.0785	TGTTACCAGGACAACC
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	31	41	+	14.4082	8.08e-06	0.219	CCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	31	41	+	14.4082	8.08e-06	0.219	CCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	22	32	-	14.4082	8.08e-06	0.219	CCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	22	32	-	14.4082	8.08e-06	0.219	CCTTCCCAGAA
Stat5a::Stat5b	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	68	78	-	14.4082	8.08e-06	0.219	TTTTCCCGGAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	19	32	+	13.7241	8.08e-06	0.0152	GACCACCCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	19	32	+	13.7241	8.08e-06	0.0152	GACCACCCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	50	63	+	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	50	63	+	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	64	77	+	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	73	86	+	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	29	42	-	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	38	51	-	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	40	53	-	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	72	85	-	13.7241	8.08e-06	0.0152	AGCCCCGCCCCCGC
MLX	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	14.6286	8.09e-06	0.188	GTCACGTGGT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	14.6286	8.09e-06	0.188	GTCACGTGGT
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	7	27	-	10.5714	8.09e-06	0.178	ATTAGAACCAAGGCCAACTTC
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	32	52	+	10.5714	8.09e-06	0.178	ATTAGAACCAAGGCCAACTTC
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	32	52	+	10.5714	8.09e-06	0.178	ATTAGAACCAAGGCCAACTTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	-	14.4918	8.09e-06	0.0572	AGCCCCGAAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	-	14.4918	8.09e-06	0.0572	AGCCCCGAAGGCC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	13.8654	8.1e-06	0.276	GCCACGTGCC
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	50	59	+	12.9798	8.1e-06	0.101	GGATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	90	99	-	12.9798	8.1e-06	0.101	GGATGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	90	99	-	12.9798	8.1e-06	0.101	GGATGGGGAA
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	13.8654	8.1e-06	0.276	GCCACGTGCC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	13.8654	8.1e-06	0.276	GCCACGTGCC
GCM1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	9	19	+	14.3673	8.1e-06	0.531	GATGCGGGCAG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	31	41	+	14.3673	8.1e-06	0.531	GGTGCGGGTGC
GCM1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	61	71	-	14.3673	8.1e-06	0.531	GGTGCGGGTGC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	96	106	-	14.3673	8.1e-06	0.531	GATGCGGGCAG
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	96	106	-	14.3673	8.1e-06	0.531	GATGCGGGCAG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	96	106	-	14.3673	8.1e-06	0.531	GATGCGGGCAG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	96	106	-	14.3673	8.1e-06	0.531	GATGCGGGCAG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	96	106	-	14.3673	8.1e-06	0.531	GATGCGGGCAG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	26	40	-	13.3607	8.1e-06	0.0293	TGCCCCGCCCACATC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	26	40	-	13.3607	8.1e-06	0.0293	TGCCCCGCCCACATC
KLF5	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	4	13	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	19	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	19	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	17	26	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	17	26	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	40	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	27	36	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	27	36	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	30	39	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	54	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	53	62	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	61	70	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	89	98	+	14.449	8.1e-06	0.0061	TCCCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	102	111	-	14.449	8.1e-06	0.0061	TCCCCGCCCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	22	36	-	13.7928	8.1e-06	0.124	GCGGGGGAGAGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	22	36	-	13.7928	8.1e-06	0.124	GCGGGGGAGAGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	13	27	+	13.7928	8.1e-06	0.124	TTAGGGCAAGGTGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	13	27	+	13.7928	8.1e-06	0.124	TTAGGGCAAGGTGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	13	27	+	13.7928	8.1e-06	0.124	TTAGGGCAAGGTGCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	59	78	+	10.211	8.1e-06	0.0376	ACCCACCACACCCAGCTTCC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	54	65	+	13.8197	8.1e-06	0.0543	GCACCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	54	65	+	13.8197	8.1e-06	0.0543	GCACCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	61	-	13.8197	8.1e-06	0.0543	GCACCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	102	113	+	13.8197	8.1e-06	0.0543	GCACCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	102	113	+	13.8197	8.1e-06	0.0543	GCACCGGAAGTG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	72	85	+	12.1702	8.1e-06	0.0959	GGTCCCCCGCCGTG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	29	42	-	10.2182	8.1e-06	0.107	AAAAAGCAGAAGCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	31	+	14.0658	8.11e-06	0.0134	TCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	31	+	14.0658	8.11e-06	0.0134	TCCCCGCCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	12	23	-	14.0658	8.11e-06	0.0134	TCCCCGCCCCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	37	48	+	14.0658	8.11e-06	0.0134	CACCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	37	48	+	14.0658	8.11e-06	0.0134	CACCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	48	+	14.0658	8.11e-06	0.0134	TCCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	37	48	+	14.0658	8.11e-06	0.0134	CACCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	48	+	14.0658	8.11e-06	0.0134	TCCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	37	48	+	14.0658	8.11e-06	0.0134	CACCCGCCCCCC
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	16	33	+	13.7561	8.11e-06	0.0575	TAAATTCTGATTGGTAGG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	16	33	+	13.7561	8.11e-06	0.0575	TAAATTCTGATTGGTAGG
ESRRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	66	76	-	14.2759	8.11e-06	0.867	TGAAGGTCATG
NR2C2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	8	22	+	13.7571	8.12e-06	0.0745	GGAGGGGAGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	37	51	+	13.7571	8.12e-06	0.0745	GGAGGGGAGGGGGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	64	78	-	13.7571	8.12e-06	0.0745	GGAGGGGAGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	93	107	-	13.7571	8.12e-06	0.0745	GGAGGGGAGGGGGCG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	35	50	-	13.8939	8.12e-06	0.0771	CGTTTCTATGGGAACC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	35	50	-	13.8939	8.12e-06	0.0771	CGTTTCTATGGGAACC
PAX5	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	42	60	+	13.9839	8.12e-06	0.137	ATAAGCAACAAAGCGAAGC
ZNF263	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	5	25	+	13.4898	8.13e-06	0.00551	GGAGAAGGCGGATCCGGGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	38	58	+	13.4898	8.13e-06	0.00551	GGAGAAGGCGGATCCGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	39	59	-	13.4898	8.13e-06	0.00551	GGAGAAGGCGGATCCGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	42	62	-	13.4898	8.13e-06	0.00551	GGTGGGGGAGGAGGGAGGAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	57	77	-	13.4898	8.13e-06	0.00551	GGAGAAGGCGGATCCGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	92	112	+	13.4898	8.13e-06	0.00551	GAATCAGGCAGGAGAGGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	90	110	-	13.4898	8.13e-06	0.00551	GGAGAAGGCGGATCCGGGAGG
ZNF143	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	26	41	+	9.39655	8.13e-06	0.231	TTCCCAGCGTGCCTCA
Myc	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	79	+	14.3091	8.13e-06	0.189	CCACGTGCCT
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	81	+	14.3091	8.13e-06	0.189	CCACGTGCCT
Myc	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	81	+	14.3091	8.13e-06	0.189	CCACGTGCCT
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	81	+	14.3091	8.13e-06	0.189	CCACGTGCCT
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	81	+	14.3091	8.13e-06	0.189	CCACGTGCCT
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.5319	8.13e-06	0.0372	ACCGGAAGCA
Myc	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	43	-	14.3091	8.13e-06	0.189	CCACGTGCCT
Myc	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	68	-	14.3091	8.13e-06	0.189	CCACGTGCCT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.5319	8.13e-06	0.0372	ACCGGAAGCA
GLIS2	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	21	34	-	13.2295	8.13e-06	0.176	CGCCCCCCGCCGCG
GLIS2	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	94	+	13.2295	8.13e-06	0.176	CGCCCCCCGCCGCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	14	27	+	14.1538	8.14e-06	0.00669	TCTCCACCCCCTGC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	30	+	14.1538	8.14e-06	0.00669	CGCCCGCCCACGTA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	12	25	-	14.1538	8.14e-06	0.00669	TGTCCACCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	12	25	-	14.1538	8.14e-06	0.00669	TGTCCACCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	12	25	-	14.1538	8.14e-06	0.00669	TGTCCACCCCCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	29	42	+	14.1538	8.14e-06	0.00669	CGCCTGCCCCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	31	44	-	14.1538	8.14e-06	0.00669	CGCCCGCCCACGTA
EGR1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	85	98	-	14.1538	8.14e-06	0.00669	CGCCCGCCCACGTA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	+	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	-	14.0182	8.15e-06	0.0397	CGCCTCGGGCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	61	-	13.7838	8.15e-06	0.124	CCGGAGCAAAGGTCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	61	-	13.7838	8.15e-06	0.124	CCGGAGCAAAGGTCG
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	61	-	13.7838	8.15e-06	0.124	CCGGAGCAAAGGTCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	61	-	13.7838	8.15e-06	0.124	CCGGAGCAAAGGTCG
E2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	30	41	-	14.2295	8.15e-06	0.334	AGTGGCGCCCAA
E2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	30	41	-	14.2295	8.15e-06	0.334	AGTGGCGCCCAA
E2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	30	41	-	14.2295	8.15e-06	0.334	AGTGGCGCCCAA
E2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	30	41	-	14.2295	8.15e-06	0.334	AGTGGCGCCCAA
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	91	107	-	9.72131	8.15e-06	0.563	GGGTCACCTGGCGGCCA
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	43	+	14.4848	8.15e-06	0.0194	TGCCCCCAGGCCTG
NFIX	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	18	26	+	11.3191	8.15e-06	0.758	GGTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	89	97	-	11.3191	8.15e-06	0.758	GGTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	89	97	-	11.3191	8.15e-06	0.758	GGTGCCAAG
ZEB1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	6	14	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	25	33	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.0.0	64	72	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	64	72	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	97	105	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	97	105	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	104	112	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	106	114	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	106	114	+	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	79	87	-	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	79	87	-	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	101	109	-	14.8182	8.15e-06	0.244	GCTCACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	104	112	-	14.8182	8.15e-06	0.244	GCTCACCTG
KLF13	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	28	45	+	11.2241	8.15e-06	0.0888	CGGCCACGCCCCCAACCT
ATF7	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	32	45	-	13.6143	8.16e-06	0.0793	GAATGACGTCAGAC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	33	46	+	13.7069	8.16e-06	0.0152	AGTCCCGCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	33	46	+	13.7069	8.16e-06	0.0152	AGTCCCGCCCCCTG
KLF14	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	90	103	+	13.7069	8.16e-06	0.0152	AGTCCCGCCCCCTG
KLF14	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	12	25	-	13.7069	8.16e-06	0.0152	AGTCCCGCCCCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	30	43	-	13.7069	8.16e-06	0.0152	CGTCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	30	43	-	13.7069	8.16e-06	0.0152	CGTCCCGCCCCCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	30	43	-	13.7069	8.16e-06	0.0152	CGTCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	30	43	-	13.7069	8.16e-06	0.0152	CGTCCCGCCCCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	69	82	-	13.7069	8.16e-06	0.0152	AGTCCCGCCCCCTG
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	14	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	15	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	15	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	28	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	28	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	28	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	40	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	65	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	65	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	77	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	92	+	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	28	38	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	28	38	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	28	38	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	36	46	-	13.7561	8.16e-06	0.00936	ACCACTCCCAC
SP3	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	38	48	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	42	52	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	50	60	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	54	64	-	13.7561	8.16e-06	0.00936	GCCCCTCCCCC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	82	-	14.3273	8.17e-06	0.0992	TCTGACGTCATC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	82	-	14.3273	8.17e-06	0.0992	TCTGACGTCATC
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	57	75	-	13.1803	8.17e-06	0.0623	TGGCCAGTGGAGGCCGCCC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	79	97	+	13.1803	8.17e-06	0.0623	TGGCCAGTGGAGGCCGCCC
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	79	97	+	13.1803	8.17e-06	0.0623	TGGCCAGTGGAGGCCGCCC
SCRT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	86	98	+	13.0656	8.17e-06	0.673	AAGCCACAGGTGA
ETV4	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	13.8103	8.18e-06	0.0647	ACCGGAAGCG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	32	49	+	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	32	49	+	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	32	49	+	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	32	49	+	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	76	93	-	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	76	93	-	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	76	93	-	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	76	93	-	-4.57895	8.18e-06	0.02	GGGTGGAGGGAGGGAAGA
ELF5	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	26	36	+	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	68	78	+	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	100	110	+	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	58	-	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	58	-	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	89	-	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	89	-	13.4545	8.18e-06	0.0953	AGGCGGAAGTG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	+	14.3607	8.19e-06	0.0462	AGCCCGGCGGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	-	14.3607	8.19e-06	0.0462	AGCCCGGCGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	-	14.3607	8.19e-06	0.0462	GGCCTTCGGGGCA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	65	79	+	13.7429	8.2e-06	0.0745	TGAGGGCGAAGGCCA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	93	107	-	13.7429	8.2e-06	0.0745	ACATGGCAGAGGGCA
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	34	47	-	11.1735	8.2e-06	0.365	TGGCTGGCCGCCAG
NFIC::TLX1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	68	81	+	11.1735	8.2e-06	0.365	TGGCTGGCCGCCAG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	54	-	13.4082	8.2e-06	0.0688	TATGACGTCAGG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	54	-	13.4082	8.2e-06	0.0688	TATGACGTCAGG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	54	-	13.4082	8.2e-06	0.0688	TATGACGTCAGG
ERG	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.1818	8.2e-06	0.0754	ACCGGATGTG
NRL	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	84	94	+	12.5385	8.21e-06	0.648	ATAATGCTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	100	110	+	12.5385	8.21e-06	0.648	ATAATGCTGAC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	9	25	+	10.7818	8.21e-06	0.00934	TAGGCCCCGGCCCCCAT
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	14	29	+	13.8727	8.21e-06	0.03	CCCGGCCCACGCACGA
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	86	101	-	13.8727	8.21e-06	0.03	CCCGGCCCACGCACGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	30	47	-	-4.59211	8.22e-06	0.02	TAAGGGGAGGGAGGAAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	+	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	-	12.9455	8.22e-06	0.215	ACTATTTATAGC
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	33	45	-	14.3443	8.22e-06	0.283	GCGTGACGCAATG
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	59	71	+	14.3443	8.22e-06	0.283	GCGTGACGCAATG
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	92	105	-	14.0141	8.22e-06	0.111	AGTATGGGGAAGTA
SPIC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	92	105	-	14.0141	8.22e-06	0.111	AGTATGGGGAAGTA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	92	105	-	14.0141	8.22e-06	0.111	AGTATGGGGAAGTA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	92	105	-	14.0141	8.22e-06	0.111	AGTATGGGGAAGTA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	92	105	-	14.0141	8.22e-06	0.111	AGTATGGGGAAGTA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	32	52	+	13.4694	8.23e-06	0.00557	GGGGGAGGCGGCGGCGGGCGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	57	77	-	13.4694	8.23e-06	0.00557	AGGGGTGGAGCTGGGAGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	63	83	-	13.4694	8.23e-06	0.00557	GGGGGAGGCGGCGGCGGGCGG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	70	83	-	13.5857	8.24e-06	0.0793	ATCTGACGTCATCC
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	70	83	-	13.5857	8.24e-06	0.0793	ATCTGACGTCATCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	25	36	-	14.0526	8.24e-06	0.0134	GCCACCCCCATC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	25	36	-	14.0526	8.24e-06	0.0134	GCCACCCCCATC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	25	36	-	14.0526	8.24e-06	0.0134	GCCACCCCCATC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	25	36	-	14.0526	8.24e-06	0.0134	GCCACCCCCATC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	11	21	+	14.3485	8.24e-06	0.0371	GGTCACACCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	35	45	-	14.3485	8.24e-06	0.0371	AGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	50	60	-	14.3485	8.24e-06	0.0371	GGTCACACCCA
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	14	23	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	23	32	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	23	32	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	23	32	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	17	26	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	29	38	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	29	38	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	29	38	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	29	38	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	29	38	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	31	40	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	31	40	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	24	33	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	25	34	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	36	45	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	27	36	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	27	36	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	27	36	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	27	36	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	36	45	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	29	38	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	30	39	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	30	39	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	45	54	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	47	56	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	56	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	56	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	47	56	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	39	48	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	39	48	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	39	48	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	39	48	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	39	48	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	49	58	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	58	67	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	60	69	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	57	66	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	75	84	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	76	85	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	81	90	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	89	98	+	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	83	92	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	92	101	-	14.1927	8.24e-06	0.0232	CCCCCCCCGC
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	60	69	-	14.6393	8.25e-06	0.494	GCAACTGTCA
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	60	69	-	14.6393	8.25e-06	0.494	GCAACTGTCA
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	10	19	+	14.6393	8.25e-06	0.494	GCAACTGTCA
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	10	19	+	14.6393	8.25e-06	0.494	GCAACTGTCA
Myb	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	93	102	+	14.6393	8.25e-06	0.494	GCAACTGTCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	26	39	-	14.1346	8.26e-06	0.00676	CCCCCTCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	26	39	-	14.1346	8.26e-06	0.00676	CCCCCTCCCCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	53	66	+	14.1346	8.26e-06	0.00676	TCACCGCCTCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	49	62	-	14.1346	8.26e-06	0.00676	TCACCGCCTCCTCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	46	+	10.156	8.26e-06	0.0376	CCCCCCCCCCCCCCCCCGCA
SRF	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	49	64	-	11.377	8.26e-06	0.299	TGGCCAAATAAGGCTA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	22	35	+	14.4697	8.26e-06	0.0195	GCCAGCCCGGCCTC
Zfx	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	54	67	+	14.4697	8.26e-06	0.0195	GCCAGCCCGGCCTC
Zfx	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	48	61	-	14.4697	8.26e-06	0.0195	GCCAGCCCGGCCTC
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	93	107	-	13.7658	8.26e-06	0.124	GGGGGGAAAAGGGGA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	8	22	+	13.7658	8.26e-06	0.124	GGGGGGAAAAGGGGA
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	54	64	-	14.5152	8.27e-06	0.766	AAGTAAACAAC
Creb5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	24	35	-	14.3091	8.27e-06	0.0992	CCTGACGTCACT
Creb5	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	57	+	14.3091	8.27e-06	0.0992	CCTGACGTCACT
Creb5	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	58	69	-	14.3091	8.27e-06	0.0992	CCTGACGTCACT
Creb5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	91	+	14.3091	8.27e-06	0.0992	CCTGACGTCACT
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	22	39	-	13.7195	8.27e-06	0.0576	AAGGCACTGATTGGTCAC
NFYA	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	76	93	+	13.7195	8.27e-06	0.0576	AAGGCACTGATTGGTCAC
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	29	-	3.82857	8.27e-06	0.629	GGGGTTCAAAGCTCA
ELK4	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	37	-	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	45	55	+	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	51	61	+	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	51	61	+	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	64	-	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	70	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	70	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	70	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	70	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	70	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	78	88	+	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	78	88	+	14.4182	8.28e-06	0.0287	CCGTTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	79	-	14.4182	8.28e-06	0.0287	GCACTTCCGCC
NKX2-3	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	2	11	+	13.6346	8.28e-06	1	ACCACTTAAC
NKX2-3	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	96	105	-	13.6346	8.28e-06	1	ACCACTTAAC
SP2	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	15	29	+	14.2069	8.29e-06	0.00383	GCTCCGCCCTACCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	19	33	-	14.2069	8.29e-06	0.00383	GTACCGCCCCCGACC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	27	41	-	14.2069	8.29e-06	0.00383	CCCCCTCCCCCCAGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	30	44	-	14.2069	8.29e-06	0.00383	GCCCCGCCTTGGGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	47	61	+	14.2069	8.29e-06	0.00383	GCCCCGCCTTGGGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	33	47	-	14.2069	8.29e-06	0.00383	CCCCCGCCCCACTGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	35	49	-	14.2069	8.29e-06	0.00383	ACCCTGCCCCCCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	35	49	-	14.2069	8.29e-06	0.00383	ACCCTGCCCCCCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	64	+	14.2069	8.29e-06	0.00383	CCCCCTCCCCCCAGG
RREB1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	8	27	+	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	88	107	-	10.1468	8.29e-06	0.0376	CACACCCACACCCACACCGG
ZIC3	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	78	92	-	13.0286	8.29e-06	0.0867	CCCCTCCCGCCGCGG
ZIC3	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	23	37	+	13.0286	8.29e-06	0.0867	CCCCTCCCGCCGCGG
BATF3	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	9	22	+	8.60606	8.29e-06	0.1	TGATGACGTCTCAG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	18	31	+	8.60606	8.29e-06	0.1	GGGTGACGTAATCT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	18	31	+	8.60606	8.29e-06	0.1	GGGTGACGTAATCT
ELF3	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	61	73	-	13.4655	8.29e-06	0.108	TTCCCGGAAGTTT
ELF3	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	42	54	+	13.4655	8.29e-06	0.108	TTCCCGGAAGTTT
GLI2	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	52	63	+	14.1207	8.29e-06	0.3	GGGACCACAATG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	+	14.1731	8.29e-06	0.0588	CGCCGGAGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	-	14.1731	8.29e-06	0.0588	CGCCGGAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	+	14.1731	8.29e-06	0.0588	CGCCGGAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	+	14.1731	8.29e-06	0.0588	CGCCGGAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	+	14.1731	8.29e-06	0.0588	CGCCGGAGGCT
ETV5	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13.0727	8.29e-06	0.0663	ACCGGATGTC
ETV5	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13.0727	8.29e-06	0.0663	ACCGGATGTC
MEF2D	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	+	12.7818	8.29e-06	0.354	ACTATAATTAGC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	22	-	14.3621	8.3e-06	0.0763	CCCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	22	-	14.3621	8.3e-06	0.0763	CCCAGCTGCG
RUNX3	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	30	39	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	33	42	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	33	42	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	81	90	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	81	90	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	81	90	-	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	76	85	+	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	76	85	+	13.9808	8.3e-06	0.439	AAACCGCAGA
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	76	85	+	13.9808	8.3e-06	0.439	AAACCGCAGA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	21	31	-	14.5306	8.3e-06	0.154	GTTCTGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	21	31	-	14.5306	8.3e-06	0.154	GTTCTGGGAAT
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	57	67	-	14.5306	8.3e-06	0.154	GTTCTGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	57	67	-	14.5306	8.3e-06	0.154	GTTCTGGGAAT
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	53	63	+	14.5306	8.3e-06	0.154	CTTCTAGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	53	63	+	14.5306	8.3e-06	0.154	CTTCTAGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	53	63	+	14.5306	8.3e-06	0.154	CTTCTAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	53	63	+	14.5306	8.3e-06	0.154	CTTCTAGGAAG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	-	14.3448	8.31e-06	0.051	AGCCTGGAGGGCA
CREB3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	22	35	-	13.9714	8.31e-06	0.196	CGGAGACGTCATCA
CREB3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	80	93	+	13.9714	8.31e-06	0.196	CGGAGACGTCATCA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	12	28	+	10.7455	8.31e-06	0.00934	CACGCCCCGCCCGCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	34	50	-	10.7455	8.31e-06	0.00934	GTCGCCCCGCCCCTGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	34	50	-	10.7455	8.31e-06	0.00934	GTCGCCCCGCCCCTGGG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	1	11	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	1	11	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	5	15	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	9	19	-	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	26	36	+	14.5192	8.31e-06	0.00459	TCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	28	38	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	28	38	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	28	38	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	46	56	+	14.5192	8.31e-06	0.00459	TCTCCTCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	52	62	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	55	65	+	14.5192	8.31e-06	0.00459	TCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	55	65	+	14.5192	8.31e-06	0.00459	TCTCCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	53	63	-	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	59	69	-	14.5192	8.31e-06	0.00459	TCTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	72	82	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	72	82	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	77	87	-	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	96	106	+	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	100	110	-	14.5192	8.31e-06	0.00459	GCTCCGCCCTC
HINFP	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	76	87	-	14.4697	8.31e-06	0.0957	CCGGGTCCGCAG
RREB1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	44	63	-	10.1376	8.31e-06	0.0376	ACCCCGCACACACCCACTCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	36	51	-	13.8545	8.31e-06	0.03	GACCTCCCACCCATAT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	36	51	-	13.8545	8.31e-06	0.03	GACCTCCCACCCATAT
TP73	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	+	13.4423	8.31e-06	0.574	GACGAGCCCGAACTCGTC
TP73	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	-	13.4423	8.31e-06	0.574	GACGAGCCCGAACTCGTC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	31	43	+	9.69388	8.32e-06	0.233	AGGGAAGTCCCCT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	44	58	+	12.8553	8.32e-06	0.0919	CCAGTGACTCTGCAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	11	31	+	13.449	8.33e-06	0.00562	GGGGGTGGGACGGGGTGTGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	15	35	+	13.449	8.33e-06	0.00562	GAAGGAGCTCGAGCGGGAGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	81	101	+	13.449	8.33e-06	0.00562	GAGTGAGAGAGGTGGGGAGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	76	96	-	13.449	8.33e-06	0.00562	GGGGCACAAGGAGGAAGTGGG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.6383	8.34e-06	0.0685	ACCGGAAGCA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	79	96	-	-4.63158	8.34e-06	0.02	TGAGGAAGGGGAGCAAGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	42	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	42	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	62	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	62	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	56	65	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	50	59	-	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	81	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	81	+	12.4082	8.34e-06	0.0831	AGTCACGTGC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	63	73	-	14.8909	8.34e-06	0.166	GTTCTGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	63	73	-	14.8909	8.34e-06	0.166	GTTCTGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	63	73	-	14.8909	8.34e-06	0.166	GTTCTGGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	63	73	-	14.8909	8.34e-06	0.166	GTTCTGGGAAG
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	+	11.8966	8.35e-06	0.0761	GGTCGCCCTGACAACG
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	+	11.8966	8.35e-06	0.0761	GGTCGCCCTGACAACG
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	49	62	-	8.57576	8.36e-06	0.1	CGATGAAGTCATAG
Klf12	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	53	67	+	13.2951	8.36e-06	0.03	GGCCCCGCCCCCGTT
Klf12	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	48	62	-	13.2951	8.36e-06	0.03	GGCCCCGCCCCCGTT
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	44	54	+	14.8364	8.36e-06	0.097	CGGTGAGTCAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	24	34	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	24	34	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	24	34	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	24	34	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	36	46	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	36	46	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	49	59	+	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	56	66	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	56	66	-	14.2727	8.36e-06	0.0056	GCGCATGTGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	+	13.9455	8.36e-06	0.0893	TGCCCGAGGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	+	13.9455	8.36e-06	0.0893	TGCCCGAGGGGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	9	25	+	10.7273	8.36e-06	0.00934	GTATCCCCGCCCACCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	9	25	+	10.7273	8.36e-06	0.00934	GTATCCCCGCCCACCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	9	25	+	10.7273	8.36e-06	0.00934	GTATCCCCGCCCACCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	9	25	+	10.7273	8.36e-06	0.00934	GTATCCCCGCCCACCGC
SP4	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	5	21	-	10.7273	8.36e-06	0.00934	CGAGCCCCGCCCCGCTC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	25	41	+	10.7273	8.36e-06	0.00934	CTGGCTCCGCCCTCATG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	25	41	+	10.7273	8.36e-06	0.00934	CTGGCTCCGCCCTCATG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	25	41	+	10.7273	8.36e-06	0.00934	CTGGCTCCGCCCTCATG
SP4	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	74	90	-	10.7273	8.36e-06	0.00934	CTGGCTCCGCCCTCATG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	24	+	13.9636	8.36e-06	0.0974	CCCCCCCCACAGTGT
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	24	+	13.9636	8.36e-06	0.0974	CCCCCCCCACCGTGT
ZIC4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	26	40	-	13.9636	8.36e-06	0.0974	GCCCCCCCGCCGCCG
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	+	14.9574	8.37e-06	0.169	GCTGACTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	-	14.9574	8.37e-06	0.169	GCTGACTCATG
Stat4	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	38	51	-	14.3966	8.37e-06	0.125	CTGCCGGGAAGTGC
Stat4	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	64	77	+	14.3966	8.37e-06	0.125	CTGCCGGGAAGTGC
SP2	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	18	32	+	14.1897	8.37e-06	0.00386	GCTCCGCCTTCCCCA
SP2	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	83	97	-	14.1897	8.37e-06	0.00386	GCTCCGCCTTCCCCA
SP2	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	92	106	-	14.1897	8.37e-06	0.00386	GGCCCGCCCCGTTAC
Six3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	11	27	+	14.0395	8.38e-06	1	GTGAGGGTATCAGGTTG
Six3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	54	70	-	14.0395	8.38e-06	1	GTGAGGGTATCAGGTTG
Six3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	54	70	-	14.0395	8.38e-06	1	GTGAGGGTATCAGGTTG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	-	14	8.38e-06	0.0397	TGCCCGAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	-	14	8.38e-06	0.0397	TGCCCGAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	+	14	8.38e-06	0.0397	CGCCTCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	+	14	8.38e-06	0.0397	CGCCTCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	+	14	8.38e-06	0.0397	CGCCTCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	+	14	8.38e-06	0.0397	CGCCTCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	+	14	8.38e-06	0.0397	CGCCTCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	+	14	8.38e-06	0.0397	CGCCTCCGGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	21	38	+	-4.64474	8.38e-06	0.02	GGAGGGGAGGAGGGCTTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	21	38	+	-4.64474	8.38e-06	0.02	GGAGGGGAGGAGGGCTTG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	50	67	+	-4.64474	8.38e-06	0.02	GGAAGGAGGGAGGGGCGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	48	65	-	-4.64474	8.38e-06	0.02	GGAAGGAGGGAGGGGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	64	81	-	-4.64474	8.38e-06	0.02	GTGAGGGAGGAAGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	64	81	-	-4.64474	8.38e-06	0.02	GTGAGGGAGGAAGGGAAG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	26	+	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	26	+	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	4	14	-	14.2759	8.38e-06	0.00885	CACACTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	57	67	-	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	57	67	-	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	57	67	-	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	57	67	-	14.2759	8.38e-06	0.00885	ACCCCGCCCCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	-	14.5714	8.38e-06	0.14	GACAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	-	14.5714	8.38e-06	0.14	GACAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	-	14.5714	8.38e-06	0.14	GACAGCTGCT
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	26	36	+	13.4364	8.39e-06	0.0953	AACCGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	89	-	13.4364	8.39e-06	0.0953	AACCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	89	-	13.4364	8.39e-06	0.0953	AACCGGAAGTC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	24	34	+	14.8103	8.39e-06	0.0269	GCGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	24	34	+	14.8103	8.39e-06	0.0269	GCGCGGGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	24	34	+	14.8103	8.39e-06	0.0269	GCGCGGGAGGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	43	54	-	14.4545	8.39e-06	0.0957	GAGCGTCCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	43	54	-	14.4545	8.39e-06	0.0957	GAGCGTCCGCCT
IRF2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	29	46	-	11.2477	8.4e-06	0.31	TTAAAGTGAAAGCAAAAG
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	41	58	-	11.2477	8.4e-06	0.31	TTAAAGTGAAAGCAAAAG
IRF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	41	58	-	11.2477	8.4e-06	0.31	TTAAAGTGAAAGCAAAAG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	+	14.3673	8.41e-06	0.14	TATGACTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	+	14.3673	8.41e-06	0.14	TATGACTCATG
EGR4	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	16	31	+	13.8364	8.41e-06	0.03	GCCCGCCCACGTAAGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	84	99	-	13.8364	8.41e-06	0.03	GCCCGCCCACGTAAGC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	84	99	-	13.8364	8.41e-06	0.03	GCCCGCCCACGTAAGC
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	48	61	+	13.3333	8.42e-06	0.198	CTGACACGTCACAG
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	48	61	+	13.3333	8.42e-06	0.198	CTGACACGTCACAG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	48	61	+	13.3333	8.42e-06	0.198	CTGACACGTCACAG
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	48	61	+	13.3333	8.42e-06	0.198	CTGACACGTCACAG
CREB3L1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	54	67	-	13.3333	8.42e-06	0.198	CTGACACGTCACAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	8	24	+	10.7091	8.42e-06	0.00934	CACGCCCCCCCCCCCTC
SP4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	38	54	+	10.7091	8.42e-06	0.00934	CACGCCCCCCCCCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	44	60	+	10.7091	8.42e-06	0.00934	CACGCCCCCCCCCCCTC
SP4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	55	71	-	10.7091	8.42e-06	0.00934	CACGCCCCCCCCCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	61	77	-	10.7091	8.42e-06	0.00934	CACGCCCCCCCCCCCTC
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	47	62	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	47	62	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	47	62	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	92	107	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	92	107	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	92	107	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	92	107	-	13.4697	8.42e-06	0.0625	GGTTGTCCTGGTAACA
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	10	23	-	14.5962	8.42e-06	0.121	AGGAGCTGAGTCAC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	32	45	-	14.5962	8.42e-06	0.121	CAAGGGTGACTCAG
JUN(var.2)	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	37	50	-	14.5962	8.42e-06	0.121	ACAGAGTGACTCAC
MYBL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	101	112	+	14.0862	8.42e-06	1	GCAGTTAACCGC
MYBL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	101	112	+	14.0862	8.42e-06	1	GCAGTTAACCGC
MYBL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	101	112	+	14.0862	8.42e-06	1	GCAGTTAACCGC
MYBL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	101	112	+	14.0862	8.42e-06	1	GCAGTTAACCGC
MYBL1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	27	38	-	14.0862	8.42e-06	1	GCAGTTAACCGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	15	32	+	-4.65789	8.42e-06	0.02	GGAAGGAACGGAGCGGGG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	10	24	+	14.1897	8.43e-06	0.232	TGGGTCAAGGCCTGC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	10	24	+	14.1897	8.43e-06	0.232	TGGGTCAAGGCCTGC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	19	33	-	14.1897	8.43e-06	0.232	TGGGTCAAGGCCTGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	19	33	-	14.1897	8.43e-06	0.232	TGGGTCAAGGCCTGC
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	14	27	-	11.5714	8.43e-06	0.0605	GAGGCCCTCGAGGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	45	+	14.3607	8.43e-06	0.102	TGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	45	+	14.3607	8.43e-06	0.102	TGTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	78	87	-	14.3607	8.43e-06	0.102	TGTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	78	87	-	14.3607	8.43e-06	0.102	TGTCACGTGA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	13.9483	8.43e-06	0.0536	TCCGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	13.9483	8.43e-06	0.0536	TCCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	13.9483	8.43e-06	0.0536	TCCGGAAGTA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	13.9483	8.43e-06	0.0536	TCCGGAAGTA
ELF1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	21	32	+	14	8.43e-06	0.0596	ACACCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	25	36	+	14	8.43e-06	0.0596	ACACCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	56	67	+	14	8.43e-06	0.0596	ACACCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	56	67	+	14	8.43e-06	0.0596	ACACCGGAAGTC
NFATC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	41	50	+	11.2276	8.43e-06	0.956	ATTTTCCGCT
NFATC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	80	89	+	11.2276	8.43e-06	0.956	ATTTTCCGCT
HOXD11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	21	30	+	13.8732	8.43e-06	1	ATCGTAAAAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	10	30	+	13.4286	8.43e-06	0.00565	GGGGAGGGGAGAAGAGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	44	64	-	13.4286	8.43e-06	0.00565	GGGAGAGGAGGAAAAAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	44	64	-	13.4286	8.43e-06	0.00565	GGGAGAGGAGGAAAAAAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	49	69	-	13.4286	8.43e-06	0.00565	GGGGGTGGGCGGAGCGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	49	69	-	13.4286	8.43e-06	0.00565	GGGGGTGGGCGGAGCGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	56	76	-	13.4286	8.43e-06	0.00565	GGAGGAAGGGAAGGGATGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	56	76	-	13.4286	8.43e-06	0.00565	GGAGGAAGGGAAGGGATGGTG
KLF14	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	78	91	+	13.6379	8.43e-06	0.0156	GGACCCGCCCCCAG
KLF14	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	24	37	-	13.6379	8.43e-06	0.0156	GGACCCGCCCCCAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	91	100	+	13.0562	8.44e-06	0.93	TGTCTGGCTT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	91	100	+	13.0562	8.44e-06	0.93	TGTCTGGCTT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	+	14.3276	8.44e-06	0.0512	TGCCCTCCAGGCT
NR2F1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	17	29	+	14.4286	8.44e-06	0.326	CCGAGGTCACACG
NR2F1	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	20	32	-	14.4286	8.44e-06	0.326	CCAAGGTCAGCGG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	83	95	+	14.4286	8.44e-06	0.326	CCAAGGTCAGCGG
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	83	95	+	14.4286	8.44e-06	0.326	CCAAGGTCAGCGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	83	95	+	14.4286	8.44e-06	0.326	CCAAGGTCAGCGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	83	95	+	14.4286	8.44e-06	0.326	CCAAGGTCAGCGG
NR2F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	86	98	-	14.4286	8.44e-06	0.326	CCGAGGTCACACG
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	86	98	-	14.4286	8.44e-06	0.326	CCGAGGTCACACG
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	13	24	+	13.8193	8.45e-06	0.722	TTATGGTAATTA
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	53	64	-	13.8193	8.45e-06	0.722	TTATGGTAATTA
ZIC3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	55	69	-	12.9857	8.45e-06	0.0867	CCCCCCCCCCCGCGA
ZIC3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	90	104	-	12.9857	8.45e-06	0.0867	CCCCCCCCCCCGCGA
ZIC3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	25	+	12.9857	8.45e-06	0.0867	CCCCCCCCCCCGCGA
ZIC3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	60	+	12.9857	8.45e-06	0.0867	CCCCCCCCCCCGCGA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	20	30	+	14.4	8.45e-06	0.063	CGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	95	-	14.4	8.45e-06	0.063	CGCCTCGGGCA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	27	40	+	11.5612	8.45e-06	0.0605	GAGGGCCAAGCGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	27	40	+	11.5612	8.45e-06	0.0605	GAGGGCCAAGCGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	4	17	-	13.1475	8.45e-06	0.176	CACCCCCAACGTTG
Myod1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	49	+	14.4898	8.46e-06	0.0942	GGCAGCTGCCGGT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	27	39	-	14.4898	8.46e-06	0.0942	CCCAGCTGCTTCT
Myod1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	66	78	-	14.4898	8.46e-06	0.0942	GGCAGCTGCCGGT
ETV3	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	14	8.46e-06	0.0551	ACCGGATGTC
ETV3	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	14	8.46e-06	0.0551	ACCGGATGTC
Myog	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	72	82	-	14.5306	8.46e-06	0.0801	GACAGCTGCGT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	93	106	+	14.0962	8.46e-06	0.00689	CCCCCTCTCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	93	106	+	14.0962	8.46e-06	0.00689	CCCCCTCTCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	93	106	+	14.0962	8.46e-06	0.00689	CCCCCTCTCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	93	106	+	14.0962	8.46e-06	0.00689	CCCCCTCTCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	93	106	+	14.0962	8.46e-06	0.00689	CCCCCTCTCCCACC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	26	36	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	26	36	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	26	36	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	26	36	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	28	38	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	28	38	-	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	51	61	-	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	103	113	-	14.6897	8.46e-06	0.0244	GAGCGGGAAGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	44	54	+	14.6897	8.46e-06	0.0244	GAGCGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	49	59	+	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	49	59	+	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	54	64	+	14.6897	8.46e-06	0.0244	GCGCGGGAAGA
E2F6	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	77	87	+	14.6897	8.46e-06	0.0244	GAGCGGGAGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	38	52	-	14.1724	8.47e-06	0.0039	GCCCCGCCTTGCGCG
POU1F1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	10	23	-	13.9655	8.47e-06	0.835	CGTATGCAAATGAC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	-	13.9636	8.47e-06	0.0397	CGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	-	13.9636	8.47e-06	0.0397	CGCCTGCGGCG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	11	28	+	-4.67105	8.47e-06	0.02	GGGAAAAGGGGAGGTGGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	39	56	-	-4.67105	8.47e-06	0.02	GGAAGTGACCCAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	40	57	-	-4.67105	8.47e-06	0.02	GGAAGAAGGAGACGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	40	57	-	-4.67105	8.47e-06	0.02	GGAAGAAGGAGACGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	59	76	+	-4.67105	8.47e-06	0.02	GGAAGTGACCCAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	59	76	+	-4.67105	8.47e-06	0.02	GGAAGTGACCCAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	59	76	+	-4.67105	8.47e-06	0.02	GGAAGTGACCCAGGAAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	59	76	+	-4.67105	8.47e-06	0.02	GGAAGTGACCCAGGAAGT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	87	104	-	-4.67105	8.47e-06	0.02	GGGAAAAGGGGAGGTGGG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	2	16	-	13.8333	8.47e-06	0.162	GAGAGTGAGTCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	2	16	-	13.8333	8.47e-06	0.162	GAGAGTGAGTCAGCT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	20	33	-	14.4394	8.48e-06	0.0197	CAGGGTGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	20	33	-	14.4394	8.48e-06	0.0197	CAGGGTGGGGCCTG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	-	11.8621	8.48e-06	0.0761	GGATTCCATGGTAACC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	-	11.8621	8.48e-06	0.0761	GGATTCCATGGTAACC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	-	13.8305	8.48e-06	1	AATTACGTAACG
SPIC	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	49	62	+	13.9718	8.48e-06	0.112	ATAAATAGGAAGTA
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	21	32	+	14.2364	8.49e-06	0.0992	GCTGACGTCACA
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	21	32	+	14.2364	8.49e-06	0.0992	GCTGACGTCACA
MNT	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	13.6364	8.49e-06	0.247	CGCACGTGCC
MNT	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	13.6364	8.49e-06	0.247	GCCACGTGCT
MNT	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	13.6364	8.49e-06	0.247	CGCACGTGCC
MNT	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	13.6364	8.49e-06	0.247	GCCACGTGCT
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	13.6364	8.49e-06	0.247	GCCACGTGCT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	13.6364	8.49e-06	0.247	GCCACGTGCT
MNT	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	13.6364	8.49e-06	0.247	CGCACGTGCC
MNT	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	13.6364	8.49e-06	0.247	CGCACGTGCC
Hmx2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	4	20	+	14.0526	8.49e-06	1	AGGAGCAATTAAGCCAA
Hmx2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	4	20	+	14.0526	8.49e-06	1	AGGAGCAATTAAGCCAA
TFEB	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	14.0385	8.49e-06	0.0768	GTCACGTGCC
TFEB	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	14.0385	8.49e-06	0.0768	GTCACGTGCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	17	30	+	8.51515	8.49e-06	0.1	CGCTGACGTCAGAG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	33	-	9.41463	8.5e-06	0.224	GGGTGCAAAGGTGA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	33	-	9.41463	8.5e-06	0.224	GGGTGCAAAGGTGA
GBX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	12.8657	8.5e-06	1	GCCAATTACC
GBX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	12.8657	8.5e-06	1	GCCAATTACC
E2F4	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	24	34	+	14.7586	8.5e-06	0.0269	AGGCGGGAGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	47	57	+	14.7586	8.5e-06	0.0269	AGGCGGGAGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	69	79	+	14.7586	8.5e-06	0.0269	AGGCGGGAGGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	81	91	-	14.7586	8.5e-06	0.0269	AGGCGGGAGGG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	58	71	+	14.3793	8.5e-06	0.125	GTTACAGGAAGTGG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	58	71	+	14.3793	8.5e-06	0.125	GTTACAGGAAGTGG
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	31	46	-	14.4024	8.5e-06	0.48	ACTCATGCAAATCAGA
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	26	41	+	14.4024	8.5e-06	0.48	ACTCATGCAAATCAGA
EGR4	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	13	28	+	13.8182	8.5e-06	0.03	GCCCGCCCGCGCCTAC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	36	51	-	13.8182	8.5e-06	0.03	TTCCCCCCACCCCCTT
EGR4	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	67	82	-	13.8182	8.5e-06	0.03	TCCGGCCCACGCCCTC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	62	72	+	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	62	72	+	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	62	72	+	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	62	72	+	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	70	80	+	14.4098	8.5e-06	0.0271	GCGGAAGTGCA
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	67	77	-	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	71	81	-	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	71	81	-	14.4098	8.5e-06	0.0271	CCGGAAGTTGG
FOS	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	+	14.8511	8.5e-06	0.161	AGTGAGTCATC
FOS	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	-	14.8511	8.5e-06	0.161	AGTGAGTCATC
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	14	28	+	13.7297	8.51e-06	0.125	CTGGAGGAGAGGGGA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	46	65	+	10.0734	8.51e-06	0.0376	GCCCCCCCCGCCCCCCCCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	46	65	+	10.0734	8.51e-06	0.0376	GCCCCCCCCGCCCCCCCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	46	65	+	10.0734	8.51e-06	0.0376	GCCCCCCCCGCCCCCCCCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	46	65	+	10.0734	8.51e-06	0.0376	GCCCCCCCCGCCCCCCCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	22	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	23	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	37	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	37	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	39	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	39	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	59	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	59	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	66	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	66	+	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	49	58	-	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	62	71	-	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	62	71	-	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	76	85	-	14.3878	8.51e-06	0.00633	CCCCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	78	87	-	14.3878	8.51e-06	0.00633	CCCCCGCCCT
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	18	29	+	13.3469	8.51e-06	0.0702	TCTGACGTCACG
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	86	97	-	13.3469	8.51e-06	0.0702	TCTGACGTCACG
Bcl6	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	49	62	+	14.0968	8.52e-06	0.231	CTTCCTGGAGAACT
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	53	66	-	14.0968	8.52e-06	0.231	CTTCCTGGAGAACT
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	53	66	-	14.0968	8.52e-06	0.231	CTTCCTGGAGAACT
KLF16	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	57	67	-	14.2586	8.52e-06	0.00896	TCCACACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	69	79	-	14.2586	8.52e-06	0.00896	TCCACACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	69	79	-	14.2586	8.52e-06	0.00896	TCCACACCCCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	92	105	+	8.5	8.52e-06	0.1	CCCTGACGTCAGCA
ZBTB33	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	80	94	+	14.1212	8.52e-06	0.0443	CTCTCGCGCTCCTGG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	23	33	+	14.6721	8.52e-06	0.118	GACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	23	33	+	14.6721	8.52e-06	0.118	GACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	23	33	+	14.6721	8.52e-06	0.118	GACCGGAAGCA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	23	33	+	14.6721	8.52e-06	0.118	GACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	23	33	+	14.6721	8.52e-06	0.118	GACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	55	65	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	55	65	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	82	92	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	82	92	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	82	92	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	82	92	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	103	113	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	103	113	+	14.6721	8.52e-06	0.118	CACCGGAAGTG
ETV2	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	60	-	14.6721	8.52e-06	0.118	CACCGGAAGTG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	59	73	-	13.4098	8.53e-06	0.216	GTGACTCAGGAGTGC
MAF::NFE2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	59	73	-	13.4098	8.53e-06	0.216	GTGACTCAGGAGTGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	9	29	-	13.4082	8.54e-06	0.00569	AGAGGAAGTGAGGAAGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	9	29	-	13.4082	8.54e-06	0.00569	AGAGGAAGTGAGGAAGGAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	27	47	-	13.4082	8.54e-06	0.00569	AAAAAAGGAAAGGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	28	48	-	13.4082	8.54e-06	0.00569	GGGGCGGGGAGGGGCGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	28	48	-	13.4082	8.54e-06	0.00569	GGGGCGGGGAGGGGCGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	65	85	+	13.4082	8.54e-06	0.00569	GGGGGAAGACAAGGAAGGAAC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	67	87	+	13.4082	8.54e-06	0.00569	GGGGCGGGGAGGGGCGGAGGG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	19	30	-	14	8.54e-06	0.0134	ACCCCGCCCATT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	19	30	-	14	8.54e-06	0.0134	ACCCCGCCCATT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	19	30	-	14	8.54e-06	0.0134	ACCCCGCCCATT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	19	30	-	14	8.54e-06	0.0134	ACCCCGCCCATT
SP8	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	74	+	14	8.54e-06	0.0134	ACCCCTCCCACT
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	3	13	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	9	19	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	13	23	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	13	23	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	13	23	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	33	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	33	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	33	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	33	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	33	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	39	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	39	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	24	34	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	30	40	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	30	40	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	53	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	53	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	36	46	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	36	46	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	36	46	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	36	46	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	36	46	-	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	37	47	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	37	47	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	37	47	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	37	47	-	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	59	+	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	59	+	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	63	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	70	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	78	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	79	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	80	+	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	85	+	14.5	8.54e-06	0.00461	CCCCCACCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	85	+	14.5	8.54e-06	0.00461	ACCCCACCCCC
NFYA	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	33	50	-	13.6585	8.55e-06	0.059	CATGTTCTGATTGGATCA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	11	24	-	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	32	45	-	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	32	45	-	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	70	83	+	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	91	104	+	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	91	104	+	11.5306	8.55e-06	0.0605	GAGGCCGTCTGGTG
LEF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	21	35	+	13.371	8.55e-06	1	GAAGATGAAAGAGAC
LEF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.0.0	21	35	+	13.371	8.55e-06	1	GAAGATGAAAGAGAC
POU4F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	46	61	+	13.8346	8.56e-06	1	GTGCATAAATAAAGAG
POU4F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	46	61	+	13.8346	8.56e-06	1	GTGCATAAATAAAGAG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	59	70	+	14.1571	8.56e-06	0.217	TGCGCCCACCCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	15	28	-	14.0769	8.56e-06	0.00694	TCCCCTCCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	15	28	-	14.0769	8.56e-06	0.00694	TCCCCTCCGCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	19	32	-	14.0769	8.56e-06	0.00694	GCGACACCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	82	+	14.0769	8.56e-06	0.00694	TCCCCTCCCCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	82	+	14.0769	8.56e-06	0.00694	TCCCCTCCCCCATC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	62	75	-	14.0769	8.56e-06	0.00694	CCTCCTCCTCCTCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	7	21	-	14.1552	8.57e-06	0.00394	GTCCCACCCCCAACG
SP2	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	62	+	14.1552	8.57e-06	0.00394	CCCCCACCCCACCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	69	+	14.1552	8.57e-06	0.00394	CCCCCACCCCACCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	69	+	14.1552	8.57e-06	0.00394	CCCCCACCCCACCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	69	+	14.1552	8.57e-06	0.00394	CCCCCACCCCACCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	45	59	-	14.1552	8.57e-06	0.00394	TCCCCTCCTCCTCAC
Klf4	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	1	10	-	14.398	8.58e-06	0.00796	AGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	25	34	-	14.398	8.58e-06	0.00796	AGGGTGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	25	34	-	14.398	8.58e-06	0.00796	AGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	105	114	+	14.398	8.58e-06	0.00796	AGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	105	114	+	14.398	8.58e-06	0.00796	AGGGTGGGGT
NFYB	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	14	28	-	14.4615	8.58e-06	0.0762	TAGCTAGCCAATCAG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	+	13.9455	8.58e-06	0.0397	AGCCGCAGGCG
RFX4	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	6	21	+	13.803	8.58e-06	0.0771	CATTGCCATGGCAATT
RFX4	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	94	109	-	13.803	8.58e-06	0.0771	CATTGCCATGGCAATT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	20	33	-	13.1148	8.59e-06	0.176	GGCCCCCAGCAGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	20	33	-	13.1148	8.59e-06	0.176	GGCCCCCAGCAGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	55	68	-	13.1148	8.59e-06	0.176	GGCCCCCAGCAGGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	55	68	-	13.1148	8.59e-06	0.176	GGCCCCCAGCAGGG
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	14	24	+	14.1552	8.59e-06	0.867	CCAAGGTCACC
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	14	24	+	14.1552	8.59e-06	0.867	CCAAGGTCACC
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	14	24	+	14.1552	8.59e-06	0.867	CCAAGGTCACC
Zfx	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	7	20	-	14.4242	8.59e-06	0.0197	GAGGCTCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	33	46	-	14.4242	8.59e-06	0.0197	GGCCCCGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	33	46	-	14.4242	8.59e-06	0.0197	GGCCCCGCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	95	108	+	14.4242	8.59e-06	0.0197	GAGGCTCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	95	108	+	14.4242	8.59e-06	0.0197	GAGGCTCCGGCCTC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	42	+	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	42	+	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	42	+	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	42	+	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	40	-	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	94	+	10.0459	8.59e-06	0.0376	ACCCCACCCCCCCCGCCCCC
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	34	47	+	11.0612	8.6e-06	0.365	GGGCACCCAGCCAA
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	68	81	-	11.0612	8.6e-06	0.365	GGGCACCCAGCCAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	13	22	-	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	30	39	+	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	30	39	+	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	45	54	-	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	45	54	-	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	61	70	+	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	76	85	-	12.899	8.6e-06	0.101	CGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	93	102	+	12.899	8.6e-06	0.101	CGAGGGGGAG
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	10	24	+	14.1552	8.6e-06	0.232	TTGCCCAAGGTCACC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	10	24	+	14.1552	8.6e-06	0.232	TTGCCCAAGGTCACC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	10	24	+	14.1552	8.6e-06	0.232	TTGCCCAAGGTCACC
E2F6	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	70	80	-	14.6724	8.6e-06	0.0246	TGGCGGGAGGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	35	45	+	14.6724	8.6e-06	0.0246	TGGCGGGAGGA
E2F8	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	10	21	+	11.4024	8.6e-06	0.631	TTTCCCGCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	18	31	-	13.6034	8.61e-06	0.0157	GACCCCGCCCATTG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	18	31	-	13.6034	8.61e-06	0.0157	GACCCCGCCCATTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	18	31	-	13.6034	8.61e-06	0.0157	GACCCCGCCCATTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	18	31	-	13.6034	8.61e-06	0.0157	GACCCCGCCCATTG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	85	96	+	14.4242	8.61e-06	0.0957	TCGCGTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	85	96	+	14.4242	8.61e-06	0.0957	TCGCGTCCGCAG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	85	96	+	14.4242	8.61e-06	0.0957	TCGCGTCCGCAG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	85	96	+	14.4242	8.61e-06	0.0957	TCGCGTCCGCAG
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	48	60	-	14.6122	8.62e-06	0.297	GTGATGACGCCAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	48	60	-	14.6122	8.62e-06	0.297	GTGATGACGCCAT
ZIC1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	27	40	-	12.0213	8.62e-06	0.0959	GCCCCCCCGCCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	75	84	-	11.2028	8.62e-06	0.0721	GACACGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	75	84	-	11.2028	8.62e-06	0.0721	GACACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	75	84	-	11.2028	8.62e-06	0.0721	GACACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	75	84	-	11.2028	8.62e-06	0.0721	GACACGCGCC
MNX1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	65	+	11.6269	8.63e-06	1	GGCAATTAAA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	47	60	+	13.2879	8.63e-06	0.198	CCGCCACGTGACCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	47	60	+	13.2879	8.63e-06	0.198	CCGCCACGTGACCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	5	21	-	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	5	21	-	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	27	43	+	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	27	43	+	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	34	50	-	10.6364	8.63e-06	0.00944	GCCGCCCCGCCCTCTCT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	62	78	-	10.6364	8.63e-06	0.00944	CCGCCCCCGCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	62	78	-	10.6364	8.63e-06	0.00944	CCGCCCCCGCCCCCTCC
SP4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	72	88	-	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
SP4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	94	110	+	10.6364	8.63e-06	0.00944	CCTGCCCCGCCTCCTCC
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	28	38	+	14.7115	8.63e-06	0.172	AGTATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	32	42	-	14.7115	8.63e-06	0.172	AGTATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	32	42	-	14.7115	8.63e-06	0.172	AGTATGAGTCA
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	70	83	-	8.4697	8.63e-06	0.1	AACTGACGTCATCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	70	83	-	8.4697	8.63e-06	0.1	AACTGACGTCATCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	70	83	-	8.4697	8.63e-06	0.1	AACTGACGTCATCC
SP8	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	75	86	+	13.9605	8.63e-06	0.0134	GCCACGCCCGCA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	62	75	+	13.9437	8.64e-06	0.112	AGAAAGGGGAAGGC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	83	96	-	13.9437	8.64e-06	0.112	AGAAAGGGGAAGGC
ATF7	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	66	79	+	13.4429	8.64e-06	0.0793	CTCTGACGTCACCA
ATF7	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	36	49	-	13.4429	8.64e-06	0.0793	CTCTGACGTCACCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	31	51	+	13.3878	8.64e-06	0.00575	GAAGCAGGAGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	20	40	-	13.3878	8.64e-06	0.00575	GAAGCAGGAGGAGTCAGGAAA
Stat4	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	33	46	-	14.3621	8.64e-06	0.125	CTTCAGGGAAGGCG
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	22	37	+	0.423077	8.65e-06	0.29	CCGCCCCCCACAAAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	25	42	-	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	25	42	-	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	25	42	-	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	25	42	-	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	25	42	-	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	73	90	+	-4.72368	8.65e-06	0.02	GGGGGCGGGGAAGGAAGA
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	-	13.7879	8.66e-06	0.0771	CGTTGTCAGGGCGACC
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	-	13.7879	8.66e-06	0.0771	CGTTGTCAGGGCGACC
RFX4	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	+	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
RFX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	-	13.7879	8.66e-06	0.0771	TGTCTCCATGGCAGCG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	76	+	14.5102	8.66e-06	0.101	AACAGCTGCCA
Tcf12	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	58	68	-	14.5102	8.66e-06	0.101	AACAGCTGCCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	+	14.1346	8.66e-06	0.0588	CGCCGCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	+	14.1346	8.66e-06	0.0588	CGCCGCAGGCG
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	60	+	14.0918	8.66e-06	0.186	CAGCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	60	+	14.0918	8.66e-06	0.186	CAGCACGTGGC
MAX::MYC	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	65	-	14.0918	8.66e-06	0.186	CAGCACGTGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	31	44	-	14.0577	8.66e-06	0.007	GCTCCGCCCACTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	31	44	-	14.0577	8.66e-06	0.007	GCTCCGCCCACTTC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	46	59	+	14.0577	8.66e-06	0.007	TCTCCTCCCCCGGA
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	56	69	-	14.0577	8.66e-06	0.007	TCTCCTCCCCCGGA
TGIF1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	2	13	-	7.53846	8.66e-06	0.451	TGACATGTGTGA
TGIF1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	102	113	+	7.53846	8.66e-06	0.451	TGACATGTGTGA
SCRT1	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	57	71	+	13.1967	8.67e-06	0.494	AGGCTACAGGTGTCT
Stat6	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	63	77	-	14.5517	8.67e-06	0.377	AGTTTCCTGGGAAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	40	+	14.1379	8.67e-06	0.00397	CCTCCGCCCACTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	32	46	+	14.1379	8.67e-06	0.00397	GGCCCTCCCTCTGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	20	34	-	14.1379	8.67e-06	0.00397	TCTCCGCCCCTTCAC
SP2	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	36	50	+	14.1379	8.67e-06	0.00397	TCCCCTCCCTCTCGC
SP2	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	54	68	-	14.1379	8.67e-06	0.00397	CTCCCTCCTCCCGGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	+	14.9362	8.67e-06	0.169	GATGACTCATA
Spz1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	20	30	-	13.9364	8.67e-06	0.464	GCGGTAACAGC
Spz1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	85	95	+	13.9364	8.67e-06	0.464	GCGGTAACAGC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	26	38	-	13.6515	8.68e-06	0.196	TGGGGAAGTCCCC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	57	69	+	13.6515	8.68e-06	0.196	TGGGGAAGTCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	46	58	-	13.6515	8.68e-06	0.196	TGGGGAAGTCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	77	89	+	13.6515	8.68e-06	0.196	TGGGGAAGTCCCC
SPDEF	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	26	36	+	14.4545	8.68e-06	0.19	AACCGGAAGTA
SPDEF	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	45	-	14.4545	8.68e-06	0.19	AACCGGAAGTA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	70	80	+	14.4545	8.68e-06	0.19	AACCGGAAGTA
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	70	80	+	14.4545	8.68e-06	0.19	AACCGGAAGTA
SPDEF	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	79	89	-	14.4545	8.68e-06	0.19	AACCGGAAGTA
SP4	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	5	21	+	10.6182	8.68e-06	0.00945	TCAGCCACGCCTATACA
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	74	90	+	10.6182	8.68e-06	0.00945	TGAAACACGCCCATTCC
SP4	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	94	110	-	10.6182	8.68e-06	0.00945	TCAGCCACGCCTATACA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	77	-	14.4	8.69e-06	0.0296	TTACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	77	-	14.4	8.69e-06	0.0296	TTACTTCCGGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	81	-	14.4	8.69e-06	0.0296	TTACTTCCGGC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	26	40	+	13.2131	8.69e-06	0.0306	GGCCACGTCCTTCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	57	71	+	13.2131	8.69e-06	0.0306	GGCCCCGCCCCCTGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	57	71	+	13.2131	8.69e-06	0.0306	GGCCCCGCCCCCTGT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	75	89	+	13.2131	8.69e-06	0.0306	AGCCACACCCACACG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	23	40	+	-4.73684	8.69e-06	0.02	GGAGGAAAAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	23	40	+	-4.73684	8.69e-06	0.02	GGAGGAAAAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	23	40	+	-4.73684	8.69e-06	0.02	GGAGGAAAAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	23	40	+	-4.73684	8.69e-06	0.02	GGAGGAAAAGGAGGAGGA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	75	92	-	-4.73684	8.69e-06	0.02	GGAGGAAAAGGAGGAGGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	62	76	+	12.9286	8.7e-06	0.0867	CCCACCCCGCTGCTC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	62	76	+	12.9286	8.7e-06	0.0867	CCCACCCCGCTGCTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	62	76	+	12.9286	8.7e-06	0.0867	CCCACCCCGCTGCTC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	-	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	-	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	-	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	+	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	+	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	+	13.5488	8.7e-06	0.129	ATCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	+	13.5488	8.7e-06	0.129	ATCACATGAC
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	17	-	12.9848	8.7e-06	0.203	GGTGTCAGAGGTTA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	30	44	+	14.0577	8.7e-06	0.265	CTGGGTCAAAGGGCA
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	22	37	+	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	22	37	+	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	22	37	+	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	25	40	-	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	50	65	+	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	50	65	-	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
ZNF143	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	75	90	+	9.17241	8.7e-06	0.231	ATCCCAGCATGCAGCG
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	14	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	14	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	19	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	19	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	23	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	23	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	24	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	24	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	24	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	24	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	4	15	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	4	15	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	7	18	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	29	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	29	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	8	19	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	8	19	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	8	19	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	8	19	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	9	20	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	9	20	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	10	21	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	10	21	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	10	21	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	10	21	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	10	21	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	33	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	12	23	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	34	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	34	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	14	25	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	14	25	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	15	26	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	39	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	39	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	39	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	17	28	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	19	30	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	19	30	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	19	30	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	19	30	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	41	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	20	31	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	43	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	44	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	44	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	44	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	44	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	44	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	22	33	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	24	35	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	24	35	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	27	38	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	27	38	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	31	42	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	31	42	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	31	42	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	31	42	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	54	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	33	44	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	34	45	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	34	45	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	36	47	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	36	47	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	36	47	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	36	47	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	37	48	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	60	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	60	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	41	52	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	41	52	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	41	52	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	41	52	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	67	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	48	59	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	76	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	76	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	76	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	56	67	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	81	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	81	+	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	61	72	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	74	85	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	74	85	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	76	87	-	13.9474	8.7e-06	0.0134	GCCCCGCCCCGC
RREB1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	57	76	+	10.0092	8.71e-06	0.0376	CCCCTCCCCACCCCGCCCCG
RREB1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	39	58	-	10.0092	8.71e-06	0.0376	CCCCTCCCCACCCCGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	19	34	+	13.7818	8.71e-06	0.03	CCCCTCCCCCGCATCA
EGR4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	49	64	+	13.7818	8.71e-06	0.03	CCCCTCCCCCGCATCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	55	70	+	13.7818	8.71e-06	0.03	CCCCTCCCCCGCATCA
EGR4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	45	60	-	13.7818	8.71e-06	0.03	CCCCTCCCCCGCATCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	51	66	-	13.7818	8.71e-06	0.03	CCCCTCCCCCGCATCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	+	14.2295	8.71e-06	0.0486	TGCCCCGAAGGCC
HEY1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	-	14.1818	8.71e-06	0.0969	GGCACGCGCC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	+	14.2653	8.71e-06	0.14	CATGACTCATA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	+	14.2653	8.71e-06	0.14	CATGACTCATA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	-	14.2653	8.71e-06	0.14	CATGACTCATA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	16	29	-	13.4143	8.71e-06	0.0793	CCATGACGTCAGAA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	16	29	-	13.4143	8.71e-06	0.0793	CCATGACGTCAGAA
TBP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	50	64	+	13.1528	8.72e-06	0.242	ATATAAAAACCCCTG
TBP	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	51	65	-	13.1528	8.72e-06	0.242	ATATAAAAACCCCTG
GLIS1	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	59	74	+	0.384615	8.72e-06	0.29	GGAGCCTCCACGATGG
GLIS1	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	41	56	-	0.384615	8.72e-06	0.29	GGAGCCTCCACGATGG
ESR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	34	50	-	7.72727	8.72e-06	0.3	GGGGTCAGGGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	18	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	18	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	25	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	25	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	62	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	91	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	91	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	91	+	14.2414	8.73e-06	0.00898	GCCCCTCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	98	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	98	+	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	17	27	-	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	24	34	-	14.2414	8.73e-06	0.00898	GCCCCTCCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	53	63	-	14.2414	8.73e-06	0.00898	CCCCCGCCCCT
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	3	20	+	11.0345	8.73e-06	0.0895	GAGCCACGCCCCGTCTGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	3	20	+	11.0345	8.73e-06	0.0895	GAGCCACGCCCCGTCTGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	3	20	+	11.0345	8.73e-06	0.0895	GAGCCACGCCCCGTCTGC
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	3	20	+	11.0345	8.73e-06	0.0895	GAGCCACGCCCCGTCTGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	3	20	+	11.0345	8.73e-06	0.0895	GAGCCACGCCCCGTCTGC
IRF1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	55	75	+	13.4839	8.73e-06	0.108	GCCTGCTTTTATTTTCTTATC
IRF1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	40	60	-	13.4839	8.73e-06	0.108	GCCTGCTTTTATTTTCTTATC
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	93	103	-	14.1515	8.73e-06	0.269	AGCCGCCATTT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	93	103	-	14.1515	8.73e-06	0.269	AGCCGCCATTT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	77	86	-	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	102	111	-	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	102	111	-	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	27	36	+	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	37	46	+	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	37	46	+	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	37	46	+	14.3404	8.74e-06	0.473	AAGTGTGAAA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	37	46	+	14.3404	8.74e-06	0.473	AAGTGTGAAA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	+	7.42308	8.74e-06	0.451	TGACAGCCGTCC
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	+	7.42308	8.74e-06	0.451	TGACAGCCGTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	87	+	13.8283	8.74e-06	0.168	TGGGATTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	28	37	-	13.8283	8.74e-06	0.168	TGGGATTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	41	50	-	13.8283	8.74e-06	0.168	TGGGATTTCC
PLAG1	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	26	39	+	11.4592	8.74e-06	0.0605	GGGGGCATAGCGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	38	51	+	11.4592	8.74e-06	0.0605	GGGGCCTCAGGGTG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	38	51	+	11.4592	8.74e-06	0.0605	GGGGCCTCAGGGTG
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	40	49	+	14.1651	8.75e-06	0.0237	GCCCCCCCAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	5	25	-	13.3673	8.75e-06	0.00581	GGTGGCGGGGGCGGGGAAAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	27	47	-	13.3673	8.75e-06	0.00581	AAAAAAGGAAAGGGGGGGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	49	69	+	13.3673	8.75e-06	0.00581	GGGGGAAGGGTTCGGGGAGAG
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	14	32	-	13.0492	8.75e-06	0.0647	TGGCCGCCAGAGTGAGCCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	52	-	13.9636	8.75e-06	0.0605	GGCCCGGAAGTC
ELF1	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	76	-	13.9636	8.75e-06	0.0605	GACCAGGAAGTG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	82	93	+	13.9636	8.75e-06	0.0605	GACCAGGAAGTG
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	59	72	+	13.569	8.75e-06	0.0157	GGCCCCGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	5	18	-	13.569	8.75e-06	0.0157	GGCTCCGCCCCCAC
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	43	56	-	13.569	8.75e-06	0.0157	GGCCCCGCCCTCCT
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	54	64	-	14.3673	8.75e-06	0.219	ACTTCCTAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	54	64	-	14.3673	8.75e-06	0.219	ACTTCCTAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	54	64	-	14.3673	8.75e-06	0.219	ACTTCCTAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	54	64	-	14.3673	8.75e-06	0.219	ACTTCCTAGAA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	19	30	-	13.9342	8.76e-06	0.0135	GCCCCACCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	19	30	-	13.9342	8.76e-06	0.0135	GCCCCACCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	22	+	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	6	16	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	16	26	+	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	29	39	+	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	29	39	+	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	28	38	-	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	28	38	-	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	28	38	-	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	28	38	-	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	29	39	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	51	61	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	62	72	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	62	72	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	71	81	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	71	81	-	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	76	86	-	14.4808	8.76e-06	0.00464	CCTCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	109	+	14.4808	8.76e-06	0.00464	ACTCCGCCCCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	1	11	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	1	11	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	37	47	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	51	61	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	63	73	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	85	95	+	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	19	29	-	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	42	52	-	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
EGR2	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	68	78	-	13.7241	8.77e-06	0.0586	CCGCCCCCGCT
YY1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	92	103	+	14.1731	8.77e-06	0.0649	CAACATGGCAGA
MSC	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	+	14.1951	8.77e-06	0.569	AACAGCTGGT
MSC	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	14.1951	8.77e-06	0.569	AACAGCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	14.1951	8.77e-06	0.569	AACAGCTGTG
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	14.1951	8.77e-06	0.569	AACAGCTGTG
PRDM1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	46	60	+	13.9818	8.77e-06	0.25	AGTAAGAGAAAGGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	32	45	-	14.0385	8.77e-06	0.00708	GCCACGCCCCCAGC
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	30	40	+	14.623	8.77e-06	0.118	AACCGGATATG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	30	40	+	14.623	8.77e-06	0.118	AACCGGATATG
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	20	-	13.4	8.78e-06	0.0793	GGGTTACGTCACCA
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	20	-	13.4	8.78e-06	0.0793	GGGTTACGTCACCA
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	20	-	13.4	8.78e-06	0.0793	GGGTTACGTCACCA
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	20	-	13.4	8.78e-06	0.0793	GGGTTACGTCACCA
E2F4	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	35	45	+	14.7069	8.78e-06	0.0275	TGGCGGGAGGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	70	80	-	14.7069	8.78e-06	0.0275	TGGCGGGAGGA
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	28	+	14.3673	8.79e-06	0.074	GCCACGTGATT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	28	+	14.3673	8.79e-06	0.074	GCCACGTGATT
ZIC4	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	16	30	-	13.8909	8.79e-06	0.0974	CGCCCCCTGCCGAGG
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	28	37	-	14.8163	8.79e-06	0.174	TGGGATTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	41	50	-	14.8163	8.79e-06	0.174	TGGGATTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	87	+	14.8163	8.79e-06	0.174	TGGGATTTCC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	13.7414	8.79e-06	0.0647	GCCGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	13.8	8.79e-06	0.0643	ACCGGAAATA
ETS1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	14.3103	8.79e-06	0.0605	ACCGGAAACG
POU1F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	95	108	-	13.9138	8.79e-06	0.835	AATATACAAATGAG
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	95	108	-	13.9138	8.79e-06	0.835	AATATACAAATGAG
ELF3	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	5	17	+	13.3276	8.79e-06	0.108	GACCAGGAAGTTG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	28	42	+	13.6143	8.79e-06	0.0758	GTGGGTGAAAGGGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	64	78	+	13.6143	8.79e-06	0.0758	ATGGGTGAGAGGTTA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	34	44	-	14.4694	8.8e-06	0.101	GGCAGCTGGTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	34	44	-	14.4694	8.8e-06	0.101	GGCAGCTGGTG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	16	26	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	31	41	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	31	41	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	31	41	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	31	41	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	45	55	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	49	59	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	52	62	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	52	62	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	63	73	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	56	66	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	67	77	+	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	60	70	-	14.1636	8.8e-06	0.00576	GCGCGCGCGCC
Esrrg	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	14	23	+	14.7347	8.81e-06	0.702	CCAAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	14	23	+	14.7347	8.81e-06	0.702	CCAAGGTCAC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	14	23	+	14.7347	8.81e-06	0.702	CCAAGGTCAC
Esrrg	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	56	65	+	14.7347	8.81e-06	0.702	TGAAGGTCAC
Esrrg	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	72	81	+	14.7347	8.81e-06	0.702	CCAAGGTCAC
Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	31	-	9.31707	8.81e-06	0.224	GAGATCAAAGTTCG
Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	31	-	9.31707	8.81e-06	0.224	GAGATCAAAGTTCG
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	7	22	-	13.7636	8.81e-06	0.03	TCACGCCCCCCCCACC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	93	108	+	13.7636	8.81e-06	0.03	TCACGCCCCCCCCACC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	89	104	-	13.7636	8.81e-06	0.03	TACCGCCGCCGCACTT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	+	13.9273	8.81e-06	0.0397	CGCCGGAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	+	13.9273	8.81e-06	0.0397	CGCCGGAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	-	13.9273	8.81e-06	0.0397	TGCCTCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	-	13.9273	8.81e-06	0.0397	TGCCTCCGGCG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	100	114	-	12.1724	8.82e-06	0.0274	CCCCGCCCCCGTGTT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	100	114	-	12.1724	8.82e-06	0.0274	CCCCGCCCCCGTGTT
RREB1	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	13	32	-	9.97248	8.83e-06	0.0376	CCCCCAACCTCAAGCACAGG
Klf12	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	4	18	+	13.1803	8.83e-06	0.0308	GGCCACGCCTCTTAT
Klf12	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	97	111	-	13.1803	8.83e-06	0.0308	GGCCACGCCTCTTAT
TP63	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	-	6.94828	8.83e-06	0.558	AACAAGTGGCGGCTTGCA
TP63	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	-	6.94828	8.83e-06	0.558	AACAAGTGGCGGCTTGCA
TP63	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	-	6.94828	8.83e-06	0.558	AACAAGTGGCGGCTTGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	+	14.2759	8.83e-06	0.0519	CGCCCTAGGGGCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	3	16	+	11.4286	8.83e-06	0.0605	GTGGGCGTCAGGGG
HOXC12	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	55	65	+	14.6182	8.84e-06	1	CGTCGTAAAAA
HOXC12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	60	-	14.6182	8.84e-06	1	CGTCGTAAAAA
HOXC12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	60	-	14.6182	8.84e-06	1	CGTCGTAAAAA
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	61	73	-	14.1148	8.84e-06	0.326	CTGCCTCCCACCT
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	3	17	+	10.3034	8.84e-06	0.163	GCACCCCTGGGGTGG
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	3	17	+	10.3034	8.84e-06	0.163	GCACCCCTGGGGTGG
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	26	40	-	10.3034	8.84e-06	0.163	GCACCCCTGGGGTGG
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	26	40	-	10.3034	8.84e-06	0.163	GCACCCCTGGGGTGG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	23	+	11.9574	8.85e-06	0.0959	CCCCCCCCACCGTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	7	27	+	13.3469	8.85e-06	0.00584	GAGGGAGAGACGGCGGGTGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	1	21	-	13.3469	8.85e-06	0.00584	GAAGGAGCCCTGAGAGGAGGC
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	29	49	+	13.3469	8.85e-06	0.00584	GAGGGGTGGGGGGGAAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	43	-	13.3469	8.85e-06	0.00584	GGGGGGGGGGGGGGGTGGGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	65	85	-	13.3469	8.85e-06	0.00584	GGAGACAGAGGAGAGAGGAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	66	86	-	13.3469	8.85e-06	0.00584	GAGGGGTGGGGGGGAAGGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	76	96	-	13.3469	8.85e-06	0.00584	GAGGCAGGAGTGGAGAGGGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	83	103	-	13.3469	8.85e-06	0.00584	GGGAGAGGGGGGAAAAAAGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	87	107	-	13.3469	8.85e-06	0.00584	GAAGCCGAGGGAAGGGAAGGA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	14	33	-	9.9633	8.86e-06	0.0376	CCCGCCCTCACCCCCATCCT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	28	+	14.1034	8.86e-06	0.00404	CTCCCGCCCCCAGGA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	9	23	-	14.1034	8.86e-06	0.00404	CTCCCGCCCCCAGGA
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	9	23	-	14.1034	8.86e-06	0.00404	CTCCCGCCCCCAGGA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	40	54	+	14.1034	8.86e-06	0.00404	GGTCCGCCCACCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	40	54	+	14.1034	8.86e-06	0.00404	GGTCCGCCCACCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	106	+	14.1034	8.86e-06	0.00404	CTCCCGCCCCCAGGA
SP2	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	87	101	-	14.1034	8.86e-06	0.00404	CTCCCGCCCCCAGGA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	16	29	+	8.39394	8.86e-06	0.1	TTCTGACGTCATGG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	16	29	+	8.39394	8.86e-06	0.1	TTCTGACGTCATGG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	12	26	+	13.8485	8.87e-06	0.152	ACGCTTTCAGTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	86	100	-	13.8485	8.87e-06	0.152	ACGCTTTCAGTTCCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	+	14.1154	8.87e-06	0.0588	CGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	+	14.1154	8.87e-06	0.0588	AGCCGCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	-	14.1154	8.87e-06	0.0588	CGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	-	14.1154	8.87e-06	0.0588	CGCCGGAGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	4	18	+	13.6	8.87e-06	0.0758	GGGGGGCGAGGGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	4	18	+	13.6	8.87e-06	0.0758	GGGGGGCGAGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	4	18	+	13.6	8.87e-06	0.0758	GGGGGGCGAGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	4	18	+	13.6	8.87e-06	0.0758	GGGGGGCGAGGGGCG
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	102	112	+	14.1212	8.87e-06	0.269	GGCCGCCATCA
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.1.0	102	112	+	14.1212	8.87e-06	0.269	GGCCGCCATCA
SP1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	35	45	-	14.4231	8.88e-06	0.00469	TCCCCGCCCCA
SP1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	70	80	+	14.4231	8.88e-06	0.00469	TCCCCGCCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	63	73	-	14.4231	8.88e-06	0.00469	TCCCCGCCCCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	27	+	14.0192	8.88e-06	0.00713	ACCACGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	55	+	14.0192	8.88e-06	0.00713	GTCCCGCCCCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	55	+	14.0192	8.88e-06	0.00713	GTCCCGCCCCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	55	+	14.0192	8.88e-06	0.00713	GTCCCGCCCCCAGG
EGR1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	60	73	-	14.0192	8.88e-06	0.00713	GTCCCGCCCCCAGG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	+	13.7424	8.88e-06	0.0771	CGTTGCTATGGCGCCC
RFX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	+	13.7424	8.88e-06	0.0771	CGTTGCTATGGCGCCC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	+	13.7424	8.88e-06	0.0771	CGTTGCTATGGCGCCC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	+	13.7424	8.88e-06	0.0771	CGTTGCTATGGCGCCC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	+	13.7424	8.88e-06	0.0771	CGTTGCTATGGCGCCC
ELF5	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	7	17	+	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	14	24	+	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	17	27	+	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	59	69	+	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	76	86	+	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	39	-	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	56	-	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	66	-	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELF5	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	98	-	13.4	8.89e-06	0.0953	AACAGGAAGTG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	33	-	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	37	-	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	37	-	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	68	-	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	68	-	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	78	88	+	14.3818	8.89e-06	0.0296	TGACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	78	88	+	14.3818	8.89e-06	0.0296	TGACTTCCGGT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	25	41	-	10.5455	8.9e-06	0.00965	CTGGCCCCACCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	25	41	-	10.5455	8.9e-06	0.00965	CTGGCCCCACCCACGTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	25	41	-	10.5455	8.9e-06	0.00965	CTGGCCCCACCCACGTC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	20	-	13.6721	8.9e-06	0.0562	CACCCGGAAATG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	20	-	13.6721	8.9e-06	0.0562	CACCCGGAAATG
Mafb	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	13	24	+	13.7528	8.9e-06	0.581	AATGCGCTGACG
YY1	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	48	59	-	14.1538	8.9e-06	0.0649	GAAAATGGCGCC
YY1	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	77	88	-	14.1538	8.9e-06	0.0649	GAAAATGGCGCC
YY1	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	27	38	+	14.1538	8.9e-06	0.0649	GAAAATGGCGCC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	42	56	-	12.8857	8.91e-06	0.0877	GGCCTCCCGCAGTTC
ETV6	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	14.3462	8.91e-06	0.0517	CCCGGAAGTA
ETV6	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	14.3462	8.91e-06	0.0517	CCCGGAAGTA
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	32	45	+	14.3788	8.91e-06	0.0202	TGGGGCGGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	32	45	+	14.3788	8.91e-06	0.0202	TGGGGCGGGGCCTT
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	-	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	-	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	-	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	-	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	+	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	+	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	+	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	+	14.2449	8.92e-06	0.14	GATGAGTCACC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	-	14.2449	8.92e-06	0.14	GATGAGTCACC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	+	13.7551	8.92e-06	0.0857	TGCCCGAGGCCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	+	13.7551	8.92e-06	0.0857	TGCCCGAGGCCA
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	32	45	+	13.8361	8.92e-06	0.365	ATTCCCCTGGGCAT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	32	45	+	13.8361	8.92e-06	0.365	ATTCCCCTGGGCAT
PROX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	78	89	-	13.4364	8.92e-06	1	GAAGACTTCTTG
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	78	89	-	13.4364	8.92e-06	1	GAAGACTTCTTG
STAT3	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	23	33	-	14.4082	8.93e-06	0.154	TTGCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	82	92	+	14.4082	8.93e-06	0.154	TTGCCGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	82	92	+	14.4082	8.93e-06	0.154	TTGCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	82	92	+	14.4082	8.93e-06	0.154	TTGCCGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	82	92	+	14.4082	8.93e-06	0.154	TTGCCGGGAAG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	10	20	-	14.449	8.93e-06	0.0531	GTCATGTGATT
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	10	20	-	14.449	8.93e-06	0.0531	GTCATGTGATT
USF2	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	105	+	14.449	8.93e-06	0.0531	GTCATGTGATT
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	60	73	+	11.3878	8.93e-06	0.0605	GTGTGCCACAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	60	73	+	11.3878	8.93e-06	0.0605	GTGTGCCACAGGGG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	34	-	12.1379	8.94e-06	0.0277	CACCGCCCACGTGTC
SOX9	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	3	11	-	13.1463	8.94e-06	1	CCATTGTTT
NRF1	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	42	52	+	14.1455	8.94e-06	0.00583	GCGTCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	63	73	-	14.1455	8.94e-06	0.00583	GCGTCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	63	73	-	14.1455	8.94e-06	0.00583	GCGTCTGCGCA
ETV2	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	26	36	+	14.5738	8.94e-06	0.118	CACCGGAAACG
ETV2	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	53	63	+	14.5738	8.94e-06	0.118	CACCGGAAACG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	62	-	14.5738	8.94e-06	0.118	CACCGGAAACG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	62	-	14.5738	8.94e-06	0.118	CACCGGAAACG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	89	-	14.5738	8.94e-06	0.118	CACCGGAAACG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	89	-	14.5738	8.94e-06	0.118	CACCGGAAACG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	+	14.1803	8.94e-06	0.0494	TGCCCTCCAGGCT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	-	14.3279	8.94e-06	0.0604	TCCCCTTCGGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	+	14.3279	8.94e-06	0.0604	TCCCCTTCGGGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	10	21	-	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	10	21	-	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	34	+	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	34	+	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	28	39	+	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	19	30	-	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	49	60	-	13.9079	8.95e-06	0.0135	GCCACTCCCCTC
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	85	96	+	13.9079	8.95e-06	0.0135	ACCCCCCCCCCC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	14.3857	8.95e-06	0.0584	ACCGGAAGCA
ERG	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	14.1455	8.95e-06	0.0754	ACCGGAAACG
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	57	77	+	13.4355	8.95e-06	0.108	CTAGTGTTTTGCTTTCTTTTT
Klf12	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	36	50	+	13.1475	8.96e-06	0.0308	GGCCCCGCCCTCGGA
Stat5a::Stat5b	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	40	50	+	14.3469	8.96e-06	0.219	ACTTCCCGGAA
Stat5a::Stat5b	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	65	75	-	14.3469	8.96e-06	0.219	ACTTCCCGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	68	88	+	13.3265	8.96e-06	0.00589	GAGGCAGTGGGTGGAGAGAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	68	88	+	13.3265	8.96e-06	0.00589	GAGGCAGTGGGTGGAGAGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	68	88	+	13.3265	8.96e-06	0.00589	GAGGCAGTGGGTGGAGAGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	68	88	+	13.3265	8.96e-06	0.00589	GAGGCAGTGGGTGGAGAGAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	65	85	-	13.3265	8.96e-06	0.00589	TGAGGAAAGAGGAAGGGAGGC
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	60	70	-	14.5102	8.96e-06	0.0816	AGCAGCTGGTG
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	60	70	-	14.5102	8.96e-06	0.0816	AGCAGCTGGTG
Znf423	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	94	108	-	10.2697	8.97e-06	0.163	AGCCCCCAAGGGCGC
Znf423	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	94	108	-	10.2697	8.97e-06	0.163	AGCCCCCAAGGGCGC
TFAP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	+	14.6182	8.97e-06	0.606	AACAGCTGTC
SP2	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	3	17	-	14.0862	8.97e-06	0.00409	TTTCCGCCCCTCCCT
SP2	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	98	112	+	14.0862	8.97e-06	0.00409	TTTCCGCCCCTCCCT
KLF14	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	50	63	+	13.5172	8.97e-06	0.016	GATCCCGCCCCTTC
KLF14	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	89	102	+	13.5172	8.97e-06	0.016	GGCCCCGCCTCCTC
KLF14	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	13	26	-	13.5172	8.97e-06	0.016	GGCCCCGCCTCCTC
KLF14	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	52	65	-	13.5172	8.97e-06	0.016	GATCCCGCCCCTTC
SPI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	68	81	-	9.90909	8.97e-06	0.114	GGAAAGAGGAAGGA
CTCF	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	21	39	+	13	8.97e-06	0.0647	TGAGCAGTAGGGGGAAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	87	97	-	14.569	8.98e-06	0.0256	GAGCGGGAAAG
HOXA10	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	46	56	+	12.6415	8.98e-06	1	AGCAATAAAAT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	29	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	44	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	44	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	52	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	52	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	52	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	101	+	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	3	13	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	14	24	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	27	37	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	28	38	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	28	38	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	28	38	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	32	42	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	32	42	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	32	42	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	32	42	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	63	73	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	71	81	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	74	84	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	74	84	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	74	84	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	74	84	-	14.1724	8.99e-06	0.00898	GTCCCGCCCCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	-	13.9273	8.99e-06	0.0548	CGCCCTGGGGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	6	23	-	-4.82895	8.99e-06	0.02	GGAGGGAGGGAGGGAGCG
USF1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	56	66	-	14.3061	8.99e-06	0.074	AGCACGTGACT
USF1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	59	+	14.3061	8.99e-06	0.074	AGCACGTGACT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	33	46	+	14	8.99e-06	0.00719	TGCCCACCCCCACG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	31	44	-	14	8.99e-06	0.00719	TGCCCACCCCCACG
EGR1	WILDTYPE__mrna.noflip.NA__chr1:173793436..173793550,-__959.1.0.0	34	47	-	14	8.99e-06	0.00719	CCTCCGCCGCCTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	77	90	-	14	8.99e-06	0.00719	CCGACGCCGCCGCC
JUNB	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	3	13	+	14.6531	8.99e-06	0.113	CAGTGACTCAG
JUNB	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	8	18	+	14.6531	8.99e-06	0.113	CAGTGACTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	65	75	+	14.6531	8.99e-06	0.113	CAGTGACTCAG
JUNB	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	102	112	-	14.6531	8.99e-06	0.113	CAGTGACTCAG
Ascl2	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	+	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	+	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	-	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	-	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	-	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	-	14.4714	8.99e-06	0.14	CGCAGCTGCT
Ascl2	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	-	14.4714	8.99e-06	0.14	CGCAGCTGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	2	12	+	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	2	12	+	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	31	41	+	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	54	64	+	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	51	61	-	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	51	61	-	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	74	84	-	13.7069	9e-06	0.0586	GCGCCCACGCC
EGR2	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	103	113	-	13.7069	9e-06	0.0586	GCGCCCACGCC
REST	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	24	44	+	10.3163	9e-06	0.192	GACTAGACCTTGGACAGCCCC
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	18	35	+	13.561	9e-06	0.0599	TCATCGGTGATTGGTCCG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	18	35	+	13.561	9e-06	0.0599	TCATCGGTGATTGGTCCG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	18	35	+	13.561	9e-06	0.0599	TCATCGGTGATTGGTCCG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	18	35	+	13.561	9e-06	0.0599	TCATCGGTGATTGGTCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	10	20	+	13.7073	9e-06	0.00936	ACCACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	57	+	13.7073	9e-06	0.00936	ACCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	57	+	13.7073	9e-06	0.00936	ACCACGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	53	63	+	13.7073	9e-06	0.00936	ACCACGCCCTC
SP3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	58	68	-	13.7073	9e-06	0.00936	ACCACGCCCCG
TEAD1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	21	30	-	12.8548	9e-06	0.741	CACATTCCTA
TEAD1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	21	30	-	12.8548	9e-06	0.741	CACATTCCTA
NRL	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	42	52	-	12.5	9.01e-06	0.648	TAAATGCTGAC
NRL	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	63	73	+	12.5	9.01e-06	0.648	TAAATGCTGAC
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	70	83	+	13.3286	9.01e-06	0.0798	GGATGACGTCAGAT
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	70	83	+	13.3286	9.01e-06	0.0798	GGATGACGTCAGAT
SRF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	41	56	+	11.1475	9.01e-06	0.302	AGACCAAATAAGGAAG
SRF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	41	56	+	11.1475	9.01e-06	0.302	AGACCAAATAAGGAAG
TBP	WILDTYPE__Lincrna.flip.sense__chr11:65266436..65266550,+__192.1.0.0	49	63	+	13.125	9.02e-06	0.242	CTATAAATACGCCTC
TBP	FLIPPED__Lincrna.flip.antisense__chr11:65266436..65266550,-__2636.1.0.0	52	66	-	13.125	9.02e-06	0.242	CTATAAATACGCCTC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	67	78	+	10.2586	9.03e-06	0.176	CGGCACGTGACC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	67	78	+	10.2586	9.03e-06	0.176	CGGCACGTGACC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	3	20	-	-4.84211	9.03e-06	0.02	GTGAGGAGGGAGGGAAGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	20	37	-	-4.84211	9.03e-06	0.02	GGAGGGAGGAAGGGAGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	24	41	-	-4.84211	9.03e-06	0.02	GGGAGGAGGGAGGAAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	51	68	-	-4.84211	9.03e-06	0.02	GGAGGAGAAGGAGGAGGG
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	16	29	+	11.622	9.03e-06	0.5	TCTGCACATGGCAC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	16	29	+	11.622	9.03e-06	0.5	TCTGCACATGGCAC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	14.1064	9.04e-06	0.0372	TCCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	14.1064	9.04e-06	0.0372	TCCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	14.1064	9.04e-06	0.0372	TCCGGAAGTA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	14.1064	9.04e-06	0.0372	TCCGGAAGTA
ETV5	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.0364	9.04e-06	0.0663	GCCGGAAGTA
ETV5	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.0364	9.04e-06	0.0663	GCCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.0364	9.04e-06	0.0663	GCCGGAAGTA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.0364	9.04e-06	0.0663	GCCGGAAGTA
ETV5	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.0364	9.04e-06	0.0663	GCCGGAAGTA
ELK3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.8621	9.04e-06	0.0536	GCCGGAAGTC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	-	13.7449	9.05e-06	0.0857	CGCCCGAGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	-	13.7449	9.05e-06	0.0857	CGCCCGAGGGGA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	20	33	+	14.3103	9.05e-06	0.125	TTGCCAGGAAAAAG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	20	33	+	14.3103	9.05e-06	0.125	TTGCCAGGAAAAAG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	20	33	+	14.3103	9.05e-06	0.125	TTGCCAGGAAAAAG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	20	33	+	14.3103	9.05e-06	0.125	TTGCCAGGAAAAAG
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	57	70	-	14.3103	9.05e-06	0.125	CTTCCGGGAAGAAC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	57	70	-	14.3103	9.05e-06	0.125	CTTCCGGGAAGAAC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	57	70	-	14.3103	9.05e-06	0.125	CTTCCGGGAAGAAC
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	57	70	-	14.3103	9.05e-06	0.125	CTTCCGGGAAGAAC
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	57	70	-	14.3103	9.05e-06	0.125	CTTCCGGGAAGAAC
SPI1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	42	-	9.89091	9.06e-06	0.114	GTAAACAGGAAGTG
SPI1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	86	+	9.89091	9.06e-06	0.114	GTAAACAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	77	-	13.8545	9.06e-06	0.0617	AACGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	77	-	13.8545	9.06e-06	0.0617	AACGCGGAAGCG
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	19	+	14.18	9.06e-06	0.473	TGTTTACACTAG
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	19	+	14.18	9.06e-06	0.473	TGTTTACACTAG
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	60	71	-	14.18	9.06e-06	0.473	TGTTTACACTAG
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	60	71	-	14.18	9.06e-06	0.473	TGTTTACACTAG
TP73	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	29	46	+	13.2692	9.06e-06	0.574	CGCAAGTCCCGGCTCGCC
TP73	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	69	86	-	13.2692	9.06e-06	0.574	CGCAAGTCCCGGCTCGCC
SP1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	16	+	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	5	15	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	5	15	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	5	15	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	5	15	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	17	27	+	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	17	27	+	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	34	44	+	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	34	44	+	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	29	39	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	29	39	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	37	47	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	42	52	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	58	68	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	59	69	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	59	69	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	59	69	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	59	69	-	14.4038	9.06e-06	0.00473	GTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	71	81	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	71	81	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
SP1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	99	109	-	14.4038	9.06e-06	0.00473	GCCCCGCCTCG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	14	24	+	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	28	38	+	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	29	39	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	29	39	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	41	51	+	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	32	42	-	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	32	42	-	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	59	69	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	64	74	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	64	74	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	64	74	-	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	77	87	-	14.3115	9.07e-06	0.0271	GCGGAAGCGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	91	101	-	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	91	101	-	14.3115	9.07e-06	0.0271	GCGGAAGCGCC
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	3	16	-	14.5	9.07e-06	0.129	ATAAAATGAGTCAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	7	27	+	13.3061	9.07e-06	0.00591	TAGGGAAGGGGTGGGGGATGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	7	27	+	13.3061	9.07e-06	0.00591	TAGGGAAGGGGTGGGGGATGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	8	28	-	13.3061	9.07e-06	0.00591	TGGGGTGGCGGGGGCGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	17	37	-	13.3061	9.07e-06	0.00591	GAGGGAGAAAGGGAGAAAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	17	37	-	13.3061	9.07e-06	0.00591	GAGGGAGAAAGGGAGAAAAGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	40	-	13.3061	9.07e-06	0.00591	GGGGGGGGGGGGGGGGGTGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	31	51	-	13.3061	9.07e-06	0.00591	GGGGGCGGGCGGAGGGAGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	31	51	-	13.3061	9.07e-06	0.00591	GGGGGCGGGCGGAGGGAGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	31	51	-	13.3061	9.07e-06	0.00591	GGGGGCGGGCGGAGGGAGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	31	51	-	13.3061	9.07e-06	0.00591	GGGGGCGGGCGGAGGGAGAGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	85	105	-	13.3061	9.07e-06	0.00591	AGAGGAGAGACAGCAGGGTGG
MEF2D	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	-	12.4	9.07e-06	0.357	TCTATAATTAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	14	31	-	-4.85526	9.07e-06	0.02	GGGAAGGAAGCAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	14	31	-	-4.85526	9.07e-06	0.02	GGGAAGGAAGCAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	45	62	+	-4.85526	9.07e-06	0.02	GGAAGGAAGGAAGCTCCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	45	62	+	-4.85526	9.07e-06	0.02	GGAAGGAAGGAAGCTCCA
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	74	85	-	10.6552	9.07e-06	0.213	AGACACGCGCCG
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	74	85	-	10.6552	9.07e-06	0.213	AGACACGCGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	74	85	-	10.6552	9.07e-06	0.213	AGACACGCGCCG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	74	85	-	10.6552	9.07e-06	0.213	AGACACGCGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	21	35	-	14.069	9.08e-06	0.00413	ACCCCTCCCCCCAGC
SP2	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	94	+	14.069	9.08e-06	0.00413	ACCCCTCCCCCCAGC
ELF4	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	67	78	-	13.6066	9.08e-06	0.0562	AACCCGGAAGGC
ALX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	11.3564	9.08e-06	1	TCCAATTAAC
ALX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	11.3564	9.08e-06	1	TCCAATTAAC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	59	-	14.0164	9.08e-06	0.0902	TAGGCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	59	-	14.0164	9.08e-06	0.0902	TAGGCGGAAGTG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	23	32	+	12.3776	9.08e-06	0.0873	GATCACGTGC
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	23	32	+	12.3776	9.08e-06	0.0873	GATCACGTGC
Mitf	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	83	92	-	12.3776	9.08e-06	0.0873	GATCACGTGC
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	61	75	+	13.803	9.09e-06	0.153	TCACTTTCATTTTTA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	7	26	-	9.88991	9.09e-06	0.0376	ACCCAGACCCCCCCCCCAGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	7	26	-	9.88991	9.09e-06	0.0376	ACCCAGACCCCCCCCCCAGC
SP8	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	21	+	13.8816	9.09e-06	0.0136	GCCCCGCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	96	109	-	13.9808	9.09e-06	0.00727	CCGCCACCGCCACC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	+	14.0577	9.09e-06	0.0588	CGCCTCAGGCC
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	5	15	+	14.2241	9.09e-06	0.555	ACTTGTTTACA
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	5	15	+	14.2241	9.09e-06	0.555	ACTTGTTTACA
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	64	74	-	14.2241	9.09e-06	0.555	ACTTGTTTACA
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	64	74	-	14.2241	9.09e-06	0.555	ACTTGTTTACA
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	6	20	+	13.7121	9.1e-06	0.162	GCCAGTGACTCAGCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	7	20	+	11.3367	9.1e-06	0.0605	GGGGGGCAGAGGGA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	28	41	-	14.3485	9.1e-06	0.0202	GGCCCTGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	28	41	-	14.3485	9.1e-06	0.0202	GGCCCTGGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	55	+	14.3485	9.1e-06	0.0202	GGCCCTGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	55	+	14.3485	9.1e-06	0.0202	GGCCCTGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	38	51	-	14.3485	9.1e-06	0.0202	CGAGGTGCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	38	51	-	14.3485	9.1e-06	0.0202	CGAGGTGCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	38	51	-	14.3485	9.1e-06	0.0202	CGAGGTGCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	38	51	-	14.3485	9.1e-06	0.0202	CGAGGTGCGGCCTC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	8	28	+	13.4032	9.1e-06	0.108	AAGTAGTTTCAGTTTCCCAGA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	20	40	-	13.4032	9.1e-06	0.108	AAGTAGTTTCAGTTTCCCAGA
TFE3	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	13.1837	9.1e-06	0.0722	ACCACGTGCC
Nr2f6	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	51	-	12.8939	9.11e-06	0.203	GGGGTCAAGGGGCG
Nr2f6	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	64	77	+	12.8939	9.11e-06	0.203	GGGGTCAAGGGGCG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	+	14.8085	9.11e-06	0.162	TATGACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	+	14.8085	9.11e-06	0.162	TATGACTCATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	97	114	+	-4.86842	9.11e-06	0.02	GGAGGCAAGGGAGAAAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	97	114	+	-4.86842	9.11e-06	0.02	GGAGGCAAGGGAGAAAAG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	31	50	-	9.88073	9.12e-06	0.0376	CCACGTCCCACCCCCCACCG
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	60	72	+	14.0366	9.12e-06	1	CTCGGGAACGTTC
HSF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	60	72	+	14.0366	9.12e-06	1	CTCGGGAACGTTC
SP4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	9	25	+	10.4727	9.12e-06	0.00981	CTGCCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	25	41	-	10.4727	9.12e-06	0.00981	TCGGCCCCTCCCCCTGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	25	41	-	10.4727	9.12e-06	0.00981	TCGGCCCCTCCCCCTGG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	25	41	-	10.4727	9.12e-06	0.00981	TCGGCCCCTCCCCCTGG
SP4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	90	106	-	10.4727	9.12e-06	0.00981	CTGCCCCCGCCCCCGCC
JUN	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	27	39	+	14.5306	9.12e-06	0.297	TTGATGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	74	86	+	14.5306	9.12e-06	0.297	TTGATGACGTCAC
JUN	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	29	41	-	14.5306	9.12e-06	0.297	TTGATGACGTCAC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	42	55	-	11.3265	9.12e-06	0.0605	GGGGCTAAAGGGAG
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	1	13	-	14.0635	9.12e-06	1	AGAAATAAATCAC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	59	72	-	13.4828	9.12e-06	0.0161	GGTCGCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	59	72	-	13.4828	9.12e-06	0.0161	GGTCGCGCCCCTTC
POU3F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	32	43	+	13.9839	9.13e-06	0.715	AAATGCAAATGA
CTCF	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	72	90	+	12.9672	9.13e-06	0.0647	GTGCCGGCGGGGGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	56	74	-	12.9672	9.13e-06	0.0647	TCGCCCCAAGATGGCGGAC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	56	74	-	12.9672	9.13e-06	0.0647	TCGCCCCAAGATGGCGGAC
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.0.0	90	108	-	12.9672	9.13e-06	0.0647	TCGCCCCAAGATGGCGGAC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.1.0	90	108	-	12.9672	9.13e-06	0.0647	TCGCCCCAAGATGGCGGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	14.9808	9.13e-06	0.0947	GGCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	14.9808	9.13e-06	0.0947	GGCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	14.9808	9.13e-06	0.0947	GGCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	14.9808	9.13e-06	0.0947	GGCACGTGCC
INSM1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	69	80	-	14.3367	9.13e-06	0.117	TGTTTGGGGGTG
YY1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	5	16	+	14.1154	9.14e-06	0.0661	AAAAATGGCGAC
RREB1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	91	110	-	9.87156	9.15e-06	0.0376	CCCCCCCCCCCCCCCCGTGT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	24	+	9.87156	9.15e-06	0.0376	CCCCCCCCCCCCCCCCGTGT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	24	+	9.87156	9.15e-06	0.0376	CCCCCCCCCCCCCCCCGTGT
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	-	14.2951	9.15e-06	0.0604	ACCCCCTAGGGCC
HES5	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	79	+	10.6034	9.15e-06	0.213	CACCACGTGCCT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	14	-	14	9.15e-06	0.297	CACACCTGCT
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	14	-	14	9.15e-06	0.297	CACACCTGCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	62	79	-	-4.88158	9.16e-06	0.02	GGCGGGAGGAAAGGAGGG
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	34	44	-	14.3654	9.16e-06	0.00477	TGCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	43	53	-	14.3654	9.16e-06	0.00477	TGCCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	59	69	+	14.3654	9.16e-06	0.00477	TGCCCGCCCCC
SPIC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	21	34	-	13.8732	9.16e-06	0.117	CGTAAGAGGAAGTC
SPDEF	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	42	52	+	14.3273	9.16e-06	0.19	AGCCGGATGCG
SPDEF	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	52	-	14.3273	9.16e-06	0.19	AGCCGGATGCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	63	73	+	14.3273	9.16e-06	0.19	AGCCGGATGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	63	73	+	14.3273	9.16e-06	0.19	AGCCGGATGCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	73	-	14.3273	9.16e-06	0.19	AGCCGGATGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	73	-	14.3273	9.16e-06	0.19	AGCCGGATGCG
Myod1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	46	58	-	14.4286	9.16e-06	0.0986	CCCACCTGTTCCC
NFE2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	-	14.1224	9.17e-06	0.14	GATGACTCACT
NFE2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	+	14.1224	9.17e-06	0.14	GATGACTCACT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	53	63	-	14.449	9.17e-06	0.101	GACAGCTGCTT
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	53	63	-	14.449	9.17e-06	0.101	GACAGCTGCTT
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	60	70	-	14.449	9.17e-06	0.101	AGCAGCTGGTG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	60	70	-	14.449	9.17e-06	0.101	AGCAGCTGGTG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	58	77	-	9.86239	9.18e-06	0.0376	CCGCCACCCAACCCCTCGCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	58	77	-	9.86239	9.18e-06	0.0376	CCGCCACCCAACCCCTCGCC
SP4	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	48	64	+	10.4545	9.18e-06	0.00984	GAGGCCCCGCCCGCGCG
SP4	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	51	67	-	10.4545	9.18e-06	0.00984	GAGGCCCCGCCCGCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	2	16	+	14.0517	9.18e-06	0.00417	GGTCCGCCTCCTTCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	67	81	-	14.0517	9.18e-06	0.00417	GCTCCGCCTTCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	67	81	-	14.0517	9.18e-06	0.00417	GCTCCGCCTTCTCCA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	24	44	+	13.2857	9.18e-06	0.00597	GGGTGAGTGGGAAGCAGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	26	46	-	13.2857	9.18e-06	0.00597	GAGAGAGAGGAGGGGGAGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	71	91	-	13.2857	9.18e-06	0.00597	GGGTGAGTGGGAAGCAGGGGA
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	30	44	-	14.3654	9.18e-06	0.0791	TGAGGAACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	30	44	-	14.3654	9.18e-06	0.0791	TGAGGAACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	30	44	-	14.3654	9.18e-06	0.0791	TGAGGAACCAATCAG
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	31	44	+	6.58182	9.19e-06	0.32	CTGAAACTGGAAGT
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	31	44	+	6.58182	9.19e-06	0.32	CTGAAACTGGAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	100	113	-	6.58182	9.19e-06	0.32	CTGAAACTGGAAGT
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	100	113	-	6.58182	9.19e-06	0.32	CTGAAACTGGAAGT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	43	+	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	43	+	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	48	+	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	32	43	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	32	43	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	72	+	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	72	+	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	67	78	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	67	78	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	72	83	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	73	84	-	13.8684	9.19e-06	0.0136	GCCCCACCCACC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	18	32	-	13.8182	9.19e-06	0.0974	GCCCACCTGTCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	18	32	-	13.8182	9.19e-06	0.0974	GCCCACCTGTCGCGC
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	21	31	+	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	42	52	-	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	59	69	+	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	59	69	+	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	63	73	+	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	84	94	-	14.0727	9.19e-06	0.00595	GCGCGTGTGCA
EGR1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	34	47	+	13.9615	9.19e-06	0.00733	CGCTCTCCCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	36	49	-	13.9615	9.19e-06	0.00733	TCCCAGCCCCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	66	79	+	13.9615	9.19e-06	0.00733	TCCCAGCCCCCTCC
IRF2	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	52	69	-	11.0367	9.19e-06	0.326	TGAAAGTGATAGTAGAAC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	9	22	+	13.4655	9.2e-06	0.0161	GACCACGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	32	45	-	13.4655	9.2e-06	0.0161	CGCTCCGCCCACTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	32	45	-	13.4655	9.2e-06	0.0161	CGCTCCGCCCACTT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	63	76	-	13.4655	9.2e-06	0.0161	GCCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	63	76	-	13.4655	9.2e-06	0.0161	GCCCCCGCCCCCTC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	68	81	+	10.898	9.2e-06	0.365	TGGGAGGAGGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	68	81	+	10.898	9.2e-06	0.365	TGGGAGGAGGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	68	81	+	10.898	9.2e-06	0.365	TGGGAGGAGGCCAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	68	81	+	10.898	9.2e-06	0.365	TGGGAGGAGGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	68	81	+	10.898	9.2e-06	0.365	TGGGAGGAGGCCAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	72	89	-	-4.89474	9.2e-06	0.02	GAAAGAAGAGAAGGGAGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	52	70	-	12.9508	9.2e-06	0.0647	CCGCCACAGGGAGGCGGAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	52	70	-	12.9508	9.2e-06	0.0647	CCGCCACAGGGAGGCGGAA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	26	40	-	13.6306	9.21e-06	0.129	GTGGATGAAAGGCCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	100	114	+	13.6306	9.21e-06	0.129	GTGGATGAAAGGCCA
HEY1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	14.1636	9.21e-06	0.0969	GGCACGTGCG
HEY1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	14.1636	9.21e-06	0.0969	GGCACGTGCG
HEY1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	14.1636	9.21e-06	0.0969	GGCACGTGCG
HEY1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	14.1636	9.21e-06	0.0969	GGCACGTGCG
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	29	40	-	13.8553	9.22e-06	0.0136	GCACCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	29	40	-	13.8553	9.22e-06	0.0136	GCACCGCCCACC
SP8	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	86	+	13.8553	9.22e-06	0.0136	GCACCGCCCACC
EGR4	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	12	27	-	13.6909	9.22e-06	0.0305	TCCCGCCCCCGCCGCC
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	16	29	-	8.25758	9.22e-06	0.1	CCATGACGTCAGAA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	16	29	-	8.25758	9.22e-06	0.1	CCATGACGTCAGAA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	101	113	-	14.0656	9.22e-06	0.326	ATGTCTCTCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	101	113	-	14.0656	9.22e-06	0.326	ATGTCTCTCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	101	113	-	14.0656	9.22e-06	0.326	ATGTCTCTCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	101	113	-	14.0656	9.22e-06	0.326	ATGTCTCTCTCCT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	21	34	+	14.4808	9.22e-06	0.129	AGAGGATGATTCAT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	+	13.8545	9.23e-06	0.0893	AGCCCTGAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	+	13.8545	9.23e-06	0.0893	TCCCCTCGGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	+	13.8545	9.23e-06	0.0893	TCCCCTCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	-	13.8545	9.23e-06	0.0893	AGCCCTGAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	70	81	-	13.8545	9.23e-06	0.0893	AACCCCAGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	70	81	-	13.8545	9.23e-06	0.0893	AACCCCAGGGCA
Znf423	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	68	+	10.2022	9.23e-06	0.163	GGCCCCCCTGGGGGC
Znf423	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	61	-	10.2022	9.23e-06	0.163	GGCCCCCCTGGGGGC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	61	-	10.2022	9.23e-06	0.163	GGCCCCCCTGGGGGC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	61	-	10.2022	9.23e-06	0.163	GGCCCCCCTGGGGGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	23	33	+	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	28	38	+	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
Gabpa	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	31	41	+	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	22	32	-	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	83	93	+	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	83	93	+	14.2623	9.24e-06	0.0271	CCGGAAGTCAG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	+	14.1148	9.24e-06	0.0495	TGCCCTTTGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	+	14.1148	9.24e-06	0.0495	TGCCCTTTGGGCG
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	26	38	+	13.5152	9.24e-06	0.196	GGGGACTTCCCCA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	46	58	+	13.5152	9.24e-06	0.196	GGGGACTTCCCCA
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	57	69	-	13.5152	9.24e-06	0.196	GGGGACTTCCCCA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	77	89	-	13.5152	9.24e-06	0.196	GGGGACTTCCCCA
Sox3	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	58	67	+	14.4655	9.25e-06	0.659	CCTTTGTTTG
ZNF740	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	3	12	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	6	15	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	7	16	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	13	22	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	13	22	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	13	22	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	15	24	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	21	30	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	25	34	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	27	36	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	36	45	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	29	38	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	30	39	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	32	41	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	33	42	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	46	55	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	46	55	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	47	56	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	48	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	62	71	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	76	85	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	81	90	+	13.9817	9.25e-06	0.0237	CCACCCCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	103	112	-	13.9817	9.25e-06	0.0237	CCACCCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	15	25	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	30	40	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	30	40	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	30	40	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	38	48	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	61	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	61	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	61	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	66	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	49	59	-	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	77	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
SP1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	100	+	14.3462	9.25e-06	0.00478	GCCCCACCCCG
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	53	69	+	12.0789	9.25e-06	0.481	CCTGGGACGTCCGGGGG
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	46	62	-	12.0789	9.25e-06	0.481	CCTGGGACGTCCGGGGG
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	41	55	+	13.2459	9.26e-06	0.228	GTGAGTCAGCTTTTG
JUN	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	81	93	+	14.5102	9.26e-06	0.297	CCAATGATGTAAT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	+	13.7245	9.26e-06	0.0857	TCCCCCCGGGCG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	38	51	+	13.4483	9.27e-06	0.0161	CGCCACGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	53	66	-	13.4483	9.27e-06	0.0161	CGCCACGCCCCTGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	86	97	+	14.2879	9.27e-06	0.0993	GCAGGTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	86	97	+	14.2879	9.27e-06	0.0993	GCAGGTCCGCGG
Myog	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	72	+	14.449	9.27e-06	0.0816	AGCAGCTGCAC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	92	+	14.449	9.27e-06	0.0816	AGCAGCTGCAC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	92	+	14.449	9.27e-06	0.0816	AGCAGCTGCAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	48	61	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	48	61	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	48	61	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	93	106	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	93	106	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	93	106	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	93	106	-	13.7931	9.27e-06	0.0887	GTTGTCCTGGTAAC
IRF8	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	57	70	-	6.54545	9.27e-06	0.32	ATGAAAGTGATAGT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	19	33	-	13.9848	9.28e-06	0.0472	ATCCCGCGAGAACGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	19	33	-	13.9848	9.28e-06	0.0472	ATCCCGCGAGAACGG
ZBTB33	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	82	96	+	13.9848	9.28e-06	0.0472	ATCCCGCGAGAACGG
SP2	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	32	46	-	14.0345	9.28e-06	0.0042	CTCCCTCCCCCGGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	63	77	+	14.0345	9.28e-06	0.0042	GTTCCGCCCACCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	63	77	+	14.0345	9.28e-06	0.0042	GTTCCGCCCACCTGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	66	80	+	14.0345	9.28e-06	0.0042	CTCCCTCCCTCGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	69	83	+	14.0345	9.28e-06	0.0042	CTCCCTCCCCCGGCT
SP2	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	88	102	+	14.0345	9.28e-06	0.0042	GCCGCGCCCCCGCCC
EGR3	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	5	19	-	12.0345	9.28e-06	0.0283	CACTGCCCCCGCAAG
EGR3	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	96	110	+	12.0345	9.28e-06	0.0283	CACTGCCCCCGCAAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	15	32	+	-4.92105	9.29e-06	0.02	GGGAGCCGGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	5	22	-	-4.92105	9.29e-06	0.02	GGGAGTGGGGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	5	22	-	-4.92105	9.29e-06	0.02	GGGAGTGGGGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	10	27	-	-4.92105	9.29e-06	0.02	GGAGCGAGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	14	31	-	-4.92105	9.29e-06	0.02	GGAGGGAGCGAGGGAGGG
Pou2f3	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	1	16	-	14.2683	9.29e-06	0.494	ACCTATGCTAATTCAA
SP4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	9	25	+	10.4182	9.29e-06	0.00992	CGCGCCCCGCCCCCGGT
SP4	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	21	37	-	10.4182	9.29e-06	0.00992	CGGGCCCCTCCCACCTC
SP4	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	78	94	+	10.4182	9.29e-06	0.00992	CGGGCCCCTCCCACCTC
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	24	41	+	13.5	9.29e-06	0.0599	ACCCAACTGATTGGTTCC
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	24	41	+	13.5	9.29e-06	0.0599	ACCCAACTGATTGGTTCC
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	24	41	+	13.5	9.29e-06	0.0599	ACCCAACTGATTGGTTCC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	44	61	-	13.5	9.29e-06	0.0599	CGCGCGCTCATTGGAGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	21	41	-	13.2653	9.29e-06	0.00603	GAAGGATTGCTGGAAGGAAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	55	75	-	13.2653	9.29e-06	0.00603	GAAGGATTGCTGGAAGGAAGA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	49	62	-	13.9423	9.3e-06	0.0074	GCCCCACCTCCACG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	49	62	-	13.9423	9.3e-06	0.0074	GCCCCACCTCCACG
RFX4	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	+	13.6667	9.3e-06	0.0793	TGGAACTATGGCAACG
RFX4	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	-	13.6667	9.3e-06	0.0793	TGGAACTATGGCAACG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	27	41	-	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
Klf12	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	74	88	+	13.0656	9.3e-06	0.0308	GGCCCCACCCACATC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	77	-	14.3455	9.3e-06	0.0306	CAGCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	77	-	14.3455	9.3e-06	0.0306	CAGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	77	-	14.3455	9.3e-06	0.0306	CAGCTTCCGGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	35	47	+	14.4082	9.32e-06	0.0986	ACCAGCTGCCCGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	35	47	+	14.4082	9.32e-06	0.0986	ACCAGCTGCCCGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	2	19	-	-4.93421	9.33e-06	0.02	GGAGGGAGGGAGCGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	2	19	-	-4.93421	9.33e-06	0.02	GGAGGGAGGGAGCGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	18	35	-	-4.93421	9.33e-06	0.02	GGAGGGAGGGAGCGAGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	30	43	-	11.8298	9.33e-06	0.0959	CCCGCCCCGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	30	43	-	11.8298	9.33e-06	0.0959	CCCGCCCCGCTGCG
Arntl	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	34	43	-	14.3115	9.34e-06	0.102	AGTCACGTGA
ZNF143	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	35	50	-	8.93103	9.34e-06	0.234	CTCCCATGAGGCCCTG
ZNF143	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	65	80	+	8.93103	9.34e-06	0.234	CTCCCATGAGGCCCTG
EGR2	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	77	87	+	13.6379	9.34e-06	0.0586	CCGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	90	100	+	13.6379	9.34e-06	0.0586	CTGCCCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	90	100	+	13.6379	9.34e-06	0.0586	CTGCCCACGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	15	25	-	13.6379	9.34e-06	0.0586	CTGCCCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	28	38	-	13.6379	9.34e-06	0.0586	CCGCCCGCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	28	38	-	13.6379	9.34e-06	0.0586	CCGCCCGCGCA
EGR2	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	51	61	-	13.6379	9.34e-06	0.0586	CCGCCCGCGCA
SP1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	11	21	+	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	14	24	+	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	5	15	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	17	27	+	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	25	35	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	25	35	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	25	35	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	25	35	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	50	60	+	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	55	65	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	94	104	-	14.3269	9.34e-06	0.00479	GCTCCGCCCCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	34	48	+	12.0172	9.34e-06	0.0283	CCCCCCCCCCGCGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	+	14.0385	9.35e-06	0.0588	AGCCTCAGGCC
GLIS1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	26	41	+	0.0384615	9.35e-06	0.29	CGACGCCCCGCGCCGG
GLIS1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	74	89	-	0.0384615	9.35e-06	0.29	CGACGCCCCGCGCCGG
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	82	+	14	9.35e-06	0.0992	GATGACGTCAGT
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	82	+	14	9.35e-06	0.0992	GATGACGTCAGT
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	82	+	14	9.35e-06	0.0992	GATGACGTCAGT
STAT1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	54	64	+	14.6	9.35e-06	0.166	ATTCTGGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	21	31	-	14.6	9.35e-06	0.166	GTTCTGGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	21	31	-	14.6	9.35e-06	0.166	GTTCTGGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	57	67	-	14.6	9.35e-06	0.166	GTTCTGGGAAT
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	57	67	-	14.6	9.35e-06	0.166	GTTCTGGGAAT
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	+	14.2623	9.35e-06	0.0604	CCCCCTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	-	14.2623	9.35e-06	0.0604	CCCCCTGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	-	14.2623	9.35e-06	0.0604	CCCCCTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	-	14.2623	9.35e-06	0.0604	CCCCCTGGGGGCG
Nr1h3::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	43	61	-	13.7581	9.35e-06	0.671	TGACCTATTGATACCCCAG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	-	14.0984	9.36e-06	0.0495	TGCCCAGGGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	-	14.0984	9.36e-06	0.0495	TGCCCAGGGGGCC
FOS	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	30	40	-	14.7872	9.36e-06	0.162	AGTGAGTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	31	41	-	14.7872	9.36e-06	0.162	AGTGAGTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	66	76	+	14.7872	9.36e-06	0.162	AGTGAGTCATG
IRF7	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	14	27	+	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	89	102	+	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	13	26	-	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	13	26	-	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	13	26	-	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	13	26	-	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
IRF7	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	88	101	-	13.2903	9.37e-06	0.341	CAGAAATCGAAAGT
FOSL2	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	13	23	+	14.7818	9.37e-06	0.102	GAATGAGTCAG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	53	63	+	14.7818	9.37e-06	0.102	GAGTGAGTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	4	14	-	14.7818	9.37e-06	0.102	GAGTGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	4	14	-	14.7818	9.37e-06	0.102	GAGTGAGTCAG
FOSL2	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	92	102	-	14.7818	9.37e-06	0.102	GAATGAGTCAG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	+	14.8364	9.37e-06	0.102	GATGACTCATA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	17	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	17	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	21	31	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	21	31	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	73	83	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	89	+	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	13	23	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	13	23	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	13	23	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	26	36	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	32	42	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	32	42	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	32	42	-	13.6829	9.38e-06	0.00936	GACCCGCCCCC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	28	41	-	14.4615	9.38e-06	0.129	AGTGTATGACTCAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	27	44	+	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	27	44	+	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	27	44	+	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	27	44	+	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	22	39	-	-4.94737	9.38e-06	0.02	TGAGGGAGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	81	98	-	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	81	98	-	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	81	98	-	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	81	98	-	-4.94737	9.38e-06	0.02	GGAGGGGGTGGAGGGAGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	69	88	+	9.79817	9.39e-06	0.0376	CACACACACACACACACACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	23	37	+	14.0172	9.39e-06	0.00425	TTCCCTCCCACCCCC
RUNX1	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	15	25	-	13.5345	9.39e-06	0.215	AGCTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	101	111	+	13.5345	9.39e-06	0.215	AGCTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	101	111	+	13.5345	9.39e-06	0.215	AGCTGTGGTTT
SPI1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	97	110	+	9.78182	9.39e-06	0.117	AATATGAGGAAGTC
Foxd3	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	85	96	-	13.8696	9.4e-06	1	GTATGTTTTTTC
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	+	12.1207	9.4e-06	0.882	AAGGACAAACTGTTCCA
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	+	12.1207	9.4e-06	0.882	AAGGACAAACTGTTCCA
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	-	12.1207	9.4e-06	0.882	AAGGACAAACTGTTCCA
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	-	12.1207	9.4e-06	0.882	AAGGACAAACTGTTCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	+	13.8364	9.41e-06	0.0893	CGCCCGGAGGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	-	13.8364	9.41e-06	0.0893	TCCCCGAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	-	13.8364	9.41e-06	0.0893	CGCCTCCGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	14	34	+	13.2449	9.41e-06	0.00608	GGAGGAGTGGGGTGGAGTGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	7	27	-	13.2449	9.41e-06	0.00608	GGAGGGGGAGGGGAGTAGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	40	60	+	13.2449	9.41e-06	0.00608	GGAGGAGCGCGGGGCTGGCGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	55	75	-	13.2449	9.41e-06	0.00608	GGAGGAGCGCGGGGCTGGCGG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	45	59	-	12	9.41e-06	0.0283	CTCCGCCCACCCTCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	56	70	-	12	9.41e-06	0.0283	CCCCACCCCCGCTCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	35	54	+	9.78899	9.42e-06	0.0376	CCCCTCCCCGCCCCCCCCGC
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	29	43	+	14.2667	9.42e-06	0.567	CCCTGTCAGCATTAA
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	29	43	+	14.2667	9.42e-06	0.567	CCCTGTCAGCATTAA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	+	14.3091	9.42e-06	0.063	CGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	-	14.3091	9.42e-06	0.063	CGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	-	14.3091	9.42e-06	0.063	CGCCGGAGGCG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	27	41	-	13.8727	9.42e-06	0.26	AGAGAAAGAAAGTGA
EGR1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	1	14	+	13.9231	9.43e-06	0.00745	GTTCCTCCTCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	46	59	+	13.9231	9.43e-06	0.00745	GTTCCTCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	56	69	-	13.9231	9.43e-06	0.00745	GTTCCTCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	56	69	-	13.9231	9.43e-06	0.00745	GTTCCTCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	86	99	-	13.9231	9.43e-06	0.00745	TCGCCGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	86	99	-	13.9231	9.43e-06	0.00745	TCGCCGCCGCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	89	102	-	13.9231	9.43e-06	0.00745	TCGCCGCCGCCACC
EGR1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	101	114	-	13.9231	9.43e-06	0.00745	GTTCCTCCTCCGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	10	24	+	13.7818	9.43e-06	0.0974	GACGCCCCGCTGCTG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	52	66	+	13.7818	9.43e-06	0.0974	GACGCCCCGCTGCTG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	10	24	+	14.3269	9.43e-06	0.0796	AATTAAGCCAATGAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	10	24	+	14.3269	9.43e-06	0.0796	AATTAAGCCAATGAG
TFEC	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	13.4146	9.44e-06	0.129	ACCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	13.4146	9.44e-06	0.129	ACCACGTGAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	29	39	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	44	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	36	46	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	40	50	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	66	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	49	59	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	51	61	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	51	61	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	51	61	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	54	64	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	54	64	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	54	64	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	54	64	-	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	65	75	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	79	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	79	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	79	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	79	+	14.3077	9.46e-06	0.00479	CCCCCTCCCTC
KLF13	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	26	43	-	10.8103	9.46e-06	0.0958	GAGAAACGCCTCTTTTGC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	-	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	+	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	+	13.8909	9.46e-06	0.0397	CGCCCCCGGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	41	51	+	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	41	51	+	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	41	51	+	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	41	51	+	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	48	58	-	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	48	58	-	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	48	58	-	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	48	58	-	14.2131	9.46e-06	0.0271	CCGGAAGCCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	63	73	+	14.2131	9.46e-06	0.0271	CCGGAAGCCGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	63	73	+	14.2131	9.46e-06	0.0271	CCGGAAGCCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	63	73	+	14.2131	9.46e-06	0.0271	CCGGAAGCCGG
SCRT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	86	100	+	12.9836	9.46e-06	0.494	CAGCCACAGGTGAGT
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	17	33	-	9.31148	9.46e-06	0.563	GGGCCATGCCAGGGCCA
ELF5	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	27	37	+	13.3455	9.46e-06	0.0953	ACCCGGAAGAA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	60	70	+	13.3455	9.46e-06	0.0953	AGCAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	60	70	+	13.3455	9.46e-06	0.0953	AGCAGGAAGTG
ELF5	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	97	107	+	13.3455	9.46e-06	0.0953	AGCAGGAAGTG
ELF5	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	18	-	13.3455	9.46e-06	0.0953	AGCAGGAAGTG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	22	-	13.3455	9.46e-06	0.0953	AGCAGGAAGTG
ELF5	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	78	88	-	13.3455	9.46e-06	0.0953	ACCCGGAAGAA
INSM1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	31	42	-	14.2857	9.47e-06	0.117	TTCATGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	-	14.1724	9.47e-06	0.0519	TGCCTCCAAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	-	14.1724	9.47e-06	0.0519	TGCCTCCAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	+	14.1724	9.47e-06	0.0519	TGCCCCCCGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	+	14.1724	9.47e-06	0.0519	TGCCCCCCGGGGC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	-	14.1724	9.47e-06	0.0519	TGCCCCCCGGGGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	+	14.1724	9.47e-06	0.0519	TGCCCCCCGGGGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	-	14.1724	9.47e-06	0.0519	TGCCCCCCGGGGC
NR2C2	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	73	87	+	13.4714	9.47e-06	0.0797	CCGGGGTAGAGGGCG
GLIS3	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	91	104	+	10.0758	9.47e-06	0.379	GACCCCACGCCACG
GLIS3	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	11	24	-	10.0758	9.47e-06	0.379	GACCCCACGCCACG
ELF4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	29	-	13.5574	9.47e-06	0.0562	GAAGCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	86	97	+	13.5574	9.47e-06	0.0562	GAAGCGGAAGTG
ELK4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	35	-	14.3273	9.47e-06	0.0308	GAACTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	80	90	+	14.3273	9.47e-06	0.0308	GAACTTCCGGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	81	91	+	14.3273	9.47e-06	0.0308	GAACTTCCGGC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	10	20	-	13.9818	9.47e-06	0.00612	GCACATGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	10	20	-	13.9818	9.47e-06	0.00612	GCACATGCGCA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	25	36	+	13.9344	9.48e-06	0.0902	CATCCGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	25	36	+	13.9344	9.48e-06	0.0902	CATCCGGAAGTT
HES7	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	13	-	10.0172	9.48e-06	0.176	GGGCACGTGACG
HES7	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	34	+	10.0172	9.48e-06	0.176	GGGCACGTGACG
HES7	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	92	-	10.0172	9.48e-06	0.176	GGGCACGTGACG
HES7	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	113	+	10.0172	9.48e-06	0.176	GGGCACGTGACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	5	15	+	14.6207	9.49e-06	0.0291	GGGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	5	15	+	14.6207	9.49e-06	0.0291	GGGCGGGAGCT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	5	15	+	14.6207	9.49e-06	0.0291	GGGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	5	15	+	14.6207	9.49e-06	0.0291	GGGCGGGAGCT
Rfx1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	45	58	+	13.7414	9.49e-06	0.0887	GTTTCTATGGAAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	57	70	-	13.7414	9.49e-06	0.0887	GTTTCTATGGAAAC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	-	13.7041	9.49e-06	0.0857	AGCCCGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	-	13.7041	9.49e-06	0.0857	AGCCCGCGGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	+	13.7041	9.49e-06	0.0857	AGCCCGCGGGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	71	82	-	13.5968	9.49e-06	0.281	GAGACCACCAAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	71	82	-	13.5968	9.49e-06	0.281	GAGACCACCAAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	33	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	33	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	33	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	33	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	33	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	39	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	39	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	53	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	53	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	63	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	70	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	78	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	79	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	85	+	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	9	19	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	30	40	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	37	47	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	37	47	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	37	47	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	37	47	-	13.6585	9.49e-06	0.00936	ACCCCACCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	47	+	14	9.49e-06	0.00428	GCCCCTCCCCTATCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	47	+	14	9.49e-06	0.00428	GCCCCTCCCCTATCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	47	+	14	9.49e-06	0.00428	GCCCCTCCCCTATCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	47	+	14	9.49e-06	0.00428	GCCCCTCCCCTATCT
SP2	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	19	33	-	14	9.49e-06	0.00428	CTCCCTCCTCCCACC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	68	82	-	14	9.49e-06	0.00428	GCCCCTCCCCTATCT
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	4	12	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	4	12	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	4	12	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	11	19	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	11	19	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	22	30	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	50	58	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	50	58	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	50	58	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	54	62	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	54	62	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	78	86	+	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	9	17	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	19	27	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	19	27	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	29	37	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	29	37	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	36	44	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	85	93	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	96	104	-	12.2182	9.5e-06	0.237	GTGCCCGCC
HIC2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	103	111	-	12.2182	9.5e-06	0.237	GTGCCCGCC
ELF1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	9	20	+	13.7636	9.5e-06	0.0642	TTACCGGAAGTG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	3	17	+	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	3	17	+	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	3	17	+	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	3	17	+	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
Klf12	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	47	61	+	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
Klf12	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	54	68	-	13.0164	9.5e-06	0.0308	GGCCCCGCCCCCACG
NRL	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	61	71	-	12.4615	9.51e-06	0.648	TTTCTGCTGAC
NRL	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	44	54	+	12.4615	9.51e-06	0.648	TTTCTGCTGAC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	27	41	-	13.6364	9.51e-06	0.162	AGAGGTGACTCAGCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	12	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	21	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	21	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	21	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	21	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	17	26	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	17	26	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	19	28	+	14.3673	9.52e-06	0.00696	GCCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	12	21	-	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	12	21	-	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	31	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	31	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	31	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	31	+	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	36	45	-	14.3673	9.52e-06	0.00696	GCCACTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	51	60	-	14.3673	9.52e-06	0.00696	GCCACTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	70	79	+	14.3673	9.52e-06	0.00696	GCCACTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	84	93	-	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	85	94	-	14.3673	9.52e-06	0.00696	TCCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	87	96	-	14.3673	9.52e-06	0.00696	GCCACTCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	12	22	+	14.1207	9.52e-06	0.00941	GCCACGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	22	+	14.1207	9.52e-06	0.00941	GCCACGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	22	+	14.1207	9.52e-06	0.00941	GCCACGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	27	37	+	14.1207	9.52e-06	0.00941	GCCACGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	37	+	14.1207	9.52e-06	0.00941	GCCACGCCCTC
KLF16	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	71	81	+	14.1207	9.52e-06	0.00941	GCCCCGCCCAT
KLF16	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	34	44	-	14.1207	9.52e-06	0.00941	GCCCCGCCCAT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	54	64	-	14.1207	9.52e-06	0.00941	GCCCCGCCCAT
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	37	57	-	13.2245	9.52e-06	0.00614	GGAGGGCGGGAGAGAGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	58	78	+	13.2245	9.52e-06	0.00614	GGAGGGCGGGAGAGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	68	88	-	13.2245	9.52e-06	0.00614	AAATGAGGAAAGAGGAAGGGA
SP4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	19	35	-	10.3455	9.52e-06	0.0102	CGCGCCCCGCCCCCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	14	23	+	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	18	27	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	18	27	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	18	27	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	18	27	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	14	23	-	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	18	27	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	18	27	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	18	27	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	18	27	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	62	71	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	62	71	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	62	71	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	62	71	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	92	101	+	10.621	9.53e-06	0.0319	TGCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	92	101	-	10.621	9.53e-06	0.0319	GGCGCGCGCA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	49	59	+	14.4286	9.53e-06	0.101	GGCAGCTGGGG
Tcf12	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	66	76	-	14.4286	9.53e-06	0.101	AACAGCTGCTT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	49	63	+	12.7429	9.54e-06	0.09	TCCTCCCTGCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	49	63	+	12.7429	9.54e-06	0.09	TCCTCCCTGCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	49	63	+	12.7429	9.54e-06	0.09	TCCTCCCTGCCGCGC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	65	79	+	13.5856	9.54e-06	0.129	TCGGGGCAGGGGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	100	114	+	13.5856	9.54e-06	0.129	CTTGGGGAAAGTGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	100	114	+	13.5856	9.54e-06	0.129	CTTGGGGAAAGTGCA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	2	21	-	9.75229	9.54e-06	0.0376	CCCCAACCCGGCCCCAGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	2	21	-	9.75229	9.54e-06	0.0376	CCCCAACCCGGCCCCAGCCC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	68	82	+	14.4043	9.55e-06	0.254	GAGGATGACGTCAGT
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	68	82	+	14.4043	9.55e-06	0.254	GAGGATGACGTCAGT
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	68	82	+	14.4043	9.55e-06	0.254	GAGGATGACGTCAGT
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	52	64	-	14.2857	9.55e-06	0.326	CCGGGGTCACGCG
Rarg(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	45	61	+	3.09091	9.55e-06	0.896	GGGGTAACAATAGGTCA
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	19	32	-	14.4423	9.55e-06	0.129	CAAAGATGAGTCAG
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	-	14.1552	9.56e-06	0.0519	CGCCCGCCGGGCT
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	+	14.1552	9.56e-06	0.0519	CGCCCGCCGGGCT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	46	59	-	13.9038	9.56e-06	0.00752	TCCCCTCCTCCTCA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	66	79	+	13.9038	9.56e-06	0.00752	CTCCCTCCCTCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	64	77	-	13.9038	9.56e-06	0.00752	GATCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	64	77	-	13.9038	9.56e-06	0.00752	GATCCGCCGCCGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	2	12	+	13.9636	9.57e-06	0.00616	GCGGGTGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr10:6622203..6622317,-__1147.1.0.0	5	15	-	13.9636	9.57e-06	0.00616	GCGGGTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr10:6622203..6622317,+__2478.1.0.0	100	110	+	13.9636	9.57e-06	0.00616	GCGGGTGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	103	113	-	13.9636	9.57e-06	0.00616	GCGGGTGCGCC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	3	16	-	13.7241	9.57e-06	0.0887	CCTACCTTGGCAAC
ELF4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	91	102	+	13.541	9.57e-06	0.0562	AAGGCGGAAGTA
KLF13	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	4	21	+	10.7759	9.58e-06	0.0959	CGGCCACGCCCACCCCAA
RARA	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	19	36	+	-0.242424	9.58e-06	1	GAGGTCACACGGACAGTG
RARA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	79	96	-	-0.242424	9.58e-06	1	GAGGTCACACGGACAGTG
RARA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	79	96	-	-0.242424	9.58e-06	1	GAGGTCACACGGACAGTG
Zfx	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	8	21	+	14.2727	9.58e-06	0.021	ACGGCCAGGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	91	104	-	14.2727	9.58e-06	0.021	GGACCCCAGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	94	107	-	14.2727	9.58e-06	0.021	ACGGCCAGGGCCTG
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	47	-	13.1633	9.58e-06	0.0747	TGTGACGTCATG
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	52	-	13.1633	9.58e-06	0.0747	TGTGACGTCATG
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	74	+	13.1633	9.58e-06	0.0747	TGTGACGTCATG
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	79	+	13.1633	9.58e-06	0.0747	TGTGACGTCATG
Klf12	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	3	17	-	13	9.58e-06	0.0308	GGCCCCGCCCCCAGA
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	5	17	+	13.4394	9.58e-06	0.196	AGGGATTTCCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	5	17	+	13.4394	9.58e-06	0.196	AGGGATTTCCCCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	3	15	-	13.4394	9.58e-06	0.196	AGGGATTTCCCCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	38	50	+	13.4394	9.58e-06	0.196	AGGGGAAATCCCA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	70	82	-	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	70	82	-	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	70	82	-	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	70	82	+	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	70	82	+	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	70	82	+	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	70	82	+	13.1379	9.59e-06	0.108	GACCCGGAAGCAC
SP2	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	33	47	+	13.9828	9.59e-06	0.00432	CGCCCTCCCCCTCCA
SP2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	53	67	+	13.9828	9.59e-06	0.00432	TCACCGCCTCCTCCC
SP2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	48	62	-	13.9828	9.59e-06	0.00432	TCACCGCCTCCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	68	82	-	13.9828	9.59e-06	0.00432	CGCCCTCCCCCTCCA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	27	47	-	10.1633	9.59e-06	0.192	GGCGGCTCCGAGGCCAGAGCC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	27	47	-	10.1633	9.59e-06	0.192	GGCGGCTCCGAGGCCAGAGCC
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	15	29	-	13.6212	9.59e-06	0.162	GAGAATGAGGCAGCA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	44	61	-	13.439	9.6e-06	0.0609	CGGGCGCTCATTGGAGCC
NFYA	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	64	81	+	13.439	9.6e-06	0.0609	CGCCCTGTGATTGGCCAC
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	4	17	+	13.8315	9.6e-06	0.681	GGGATGTGGGTCAA
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	4	17	+	13.8315	9.6e-06	0.681	GGGATGTGGGTCAA
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	26	39	-	13.8315	9.6e-06	0.681	GGGATGTGGGTCAA
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	26	39	-	13.8315	9.6e-06	0.681	GGGATGTGGGTCAA
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	53	63	+	14.5818	9.6e-06	0.166	CTTCTAGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	53	63	+	14.5818	9.6e-06	0.166	CTTCTAGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	53	63	+	14.5818	9.6e-06	0.166	CTTCTAGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	53	63	+	14.5818	9.6e-06	0.166	CTTCTAGGAAG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	93	111	-	12.8689	9.6e-06	0.0647	AGGACACCAGACGGCAGCG
Myog	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	103	+	14.3878	9.6e-06	0.0816	AGCAGCTGCTC
Myog	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	92	102	-	14.3878	9.6e-06	0.0816	AGCAGCTGCTC
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	6	19	-	14.2414	9.61e-06	0.125	CTTCTGAGAAACTG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	6	19	-	14.2414	9.61e-06	0.125	CTTCTGAGAAACTG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	6	19	-	14.2414	9.61e-06	0.125	CTTCTGAGAAACTG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	6	19	-	14.2414	9.61e-06	0.125	CTTCTGAGAAACTG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	6	19	-	14.2414	9.61e-06	0.125	CTTCTGAGAAACTG
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	5	19	+	12.5263	9.62e-06	0.102	GAGATGAGTAAGCAA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	96	110	-	12.5263	9.62e-06	0.102	GAGATGAGTAAGCAA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	96	110	-	12.5263	9.62e-06	0.102	GAGATGAGTAAGCAA
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	15	28	-	11.1633	9.62e-06	0.0605	GGGGGCACGGGGGG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	10	22	-	13.4242	9.62e-06	0.196	CGGGGACTCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	10	22	-	13.4242	9.62e-06	0.196	CGGGGACTCCCCG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	10	22	-	13.4242	9.62e-06	0.196	CGGGGACTCCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	10	22	-	13.4242	9.62e-06	0.196	CGGGGACTCCCCG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	18	35	+	-5.01316	9.63e-06	0.0205	GGGAGGCAGGGAGGGAGA
Creb5	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	20	+	13.9455	9.63e-06	0.0992	TCTGACGTCACT
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	14	25	-	13.9455	9.63e-06	0.0992	TCTGACGTCACT
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	14	25	-	13.9455	9.63e-06	0.0992	TCTGACGTCACT
Creb5	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	101	+	13.9455	9.63e-06	0.0992	TCTGACGTCACT
Creb5	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	95	106	-	13.9455	9.63e-06	0.0992	TCTGACGTCACT
GLIS2	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	18	31	-	12.8689	9.63e-06	0.176	CGCCCCCCGCAGGC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	60	73	+	12.8689	9.63e-06	0.176	CGCCCCCCGCAGGC
TGIF2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	2	13	-	12.5413	9.63e-06	0.546	TGACATGTGTGA
TGIF2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	102	113	+	12.5413	9.63e-06	0.546	TGACATGTGTGA
ELF5	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	32	42	-	13.2909	9.63e-06	0.0959	ACCCGGAAGAG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	2	15	-	11.7447	9.64e-06	0.0959	CGCCTCCCGCCGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	41	-	13.2041	9.64e-06	0.00619	GGAGGGAGAGCGGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	41	-	13.2041	9.64e-06	0.00619	GGAGGGAGAGCGGGGAGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	41	-	13.2041	9.64e-06	0.00619	GGAGGGAGAGCGGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	41	-	13.2041	9.64e-06	0.00619	GGAGGGAGAGCGGGGAGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	45	65	+	13.2041	9.64e-06	0.00619	GGAGGAAGAAAGGCGAAGGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	49	69	+	13.2041	9.64e-06	0.00619	GGAAGAGACGAGGCAGGAAGA
Myod1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	59	71	-	14.3878	9.64e-06	0.0986	TGCAGCTGCTCTG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	79	91	-	14.3878	9.64e-06	0.0986	TGCAGCTGCTCTG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	79	91	-	14.3878	9.64e-06	0.0986	TGCAGCTGCTCTG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	+	13.6939	9.64e-06	0.0857	CGCCCGCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	+	13.6939	9.64e-06	0.0857	CGCCCGCGGGCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	-	13.6939	9.64e-06	0.0857	CGCCCGCGGGCT
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	20	+	8.10606	9.64e-06	0.1	TGGTGACGTAACCC
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	20	+	8.10606	9.64e-06	0.1	TGGTGACGTAACCC
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	20	+	8.10606	9.64e-06	0.1	TGGTGACGTAACCC
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	20	+	8.10606	9.64e-06	0.1	TGGTGACGTAACCC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	7	22	-	9.70909	9.64e-06	0.186	TAGGCCAAAGTCCTGG
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	7	22	-	9.70909	9.64e-06	0.186	TAGGCCAAAGTCCTGG
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	20	34	+	13.6818	9.65e-06	0.156	TCAGTTTCCTTTACC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	69	83	-	13.6818	9.65e-06	0.156	TCAGTTTCCTTTACC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	7	22	+	13.6182	9.65e-06	0.0305	CCACGCCCCCCCCCCC
EGR4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	37	52	+	13.6182	9.65e-06	0.0305	CCACGCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	43	58	+	13.6182	9.65e-06	0.0305	CCACGCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	32	47	-	13.6182	9.65e-06	0.0305	TTCCTCCCACGCCTCA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	32	47	-	13.6182	9.65e-06	0.0305	TTCCTCCCACGCCTCA
EGR4	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	68	83	+	13.6182	9.65e-06	0.0305	TTCCTCCCACGCCTCA
EGR4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	57	72	-	13.6182	9.65e-06	0.0305	CCACGCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	63	78	-	13.6182	9.65e-06	0.0305	CCACGCCCCCCCCCCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	26	40	+	13.7455	9.65e-06	0.0974	GGCCCCACGCTGCTT
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	26	40	+	13.7455	9.65e-06	0.0974	GGCCCCACGCTGCTT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	26	40	+	13.7455	9.65e-06	0.0974	GGCCCCACGCTGCTT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	26	40	+	13.7455	9.65e-06	0.0974	GGCCCCACGCTGCTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	13.9787	9.65e-06	0.0372	CCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
ETV5	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.0182	9.65e-06	0.0663	ACCGGAAGCC
NHLH1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	+	14.2241	9.65e-06	0.0866	CGCAGCTGTT
NHLH1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	-	14.2241	9.65e-06	0.0866	CGCAGCTGTT
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	4	14	-	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	4	14	-	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	60	70	-	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	60	70	-	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	60	70	-	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	12	22	+	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	45	55	+	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
E2F6	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	101	111	+	14.5517	9.66e-06	0.0268	AGGAGGGAAGG
EGR2	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	12	22	+	13.5517	9.66e-06	0.0586	ACGCCGACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	93	103	-	13.5517	9.66e-06	0.0586	ACGCCGACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	93	103	-	13.5517	9.66e-06	0.0586	ACGCCGACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	93	103	-	13.5517	9.66e-06	0.0586	ACGCCGACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	93	103	-	13.5517	9.66e-06	0.0586	ACGCCGACGCG
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	-	11.5745	9.66e-06	0.704	CGGTACACGCTGTCCAC
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	-	11.5745	9.66e-06	0.704	CGGTACACGCTGTCCAC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	58	71	+	13.9355	9.67e-06	0.232	GTTGCTGGAAAGCC
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	58	71	+	13.9355	9.67e-06	0.232	GTTGCTGGAAAGCC
Nr1h3::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	43	61	-	13.7097	9.68e-06	0.671	TGACCTATTTTTACCCCAG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	+	14.2131	9.68e-06	0.061	TGCCCTTTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	+	14.2131	9.68e-06	0.061	TGCCCTTTGGGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	78	88	+	13.9273	9.68e-06	0.00622	GCGTCTGCGCG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	10	28	+	12.8525	9.68e-06	0.0647	TTTACACTAGAGGGCAAAA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	10	28	+	12.8525	9.68e-06	0.0647	TTTACACTAGAGGGCAAAA
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	51	69	-	12.8525	9.68e-06	0.0647	TTTACACTAGAGGGCAAAA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	51	69	-	12.8525	9.68e-06	0.0647	TTTACACTAGAGGGCAAAA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	17	27	-	14.1818	9.68e-06	0.0388	CGCCACACCCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	+	14.1379	9.69e-06	0.0521	GGCCCCGGGGGGG
SPI1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	46	59	+	9.69091	9.69e-06	0.118	AGATACCGGAAGTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	22	36	-	13.9655	9.69e-06	0.00434	GCCCCGCCCCGAGTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	22	36	-	13.9655	9.69e-06	0.00434	GCCCCGCCCCGAGTG
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	33	47	-	13.9655	9.69e-06	0.00434	CCTCCGCCCCCACAC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	58	72	-	13.9655	9.69e-06	0.00434	CGCCCGCCCTCAGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	58	72	-	13.9655	9.69e-06	0.00434	CGCCCGCCCTCAGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	58	72	-	13.9655	9.69e-06	0.00434	CGCCCGCCCTCAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	58	72	-	13.9655	9.69e-06	0.00434	CGCCCGCCCTCAGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	11	24	+	13.8846	9.7e-06	0.00754	CCTACTCCCCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	18	31	-	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	18	31	-	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	33	46	-	13.8846	9.7e-06	0.00754	CCCCCACCCCTACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	33	46	-	13.8846	9.7e-06	0.00754	CCCCCACCCCTACC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	33	46	-	13.8846	9.7e-06	0.00754	CCCCCACCCCTACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	33	46	-	13.8846	9.7e-06	0.00754	CCCCCACCCCTACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	33	46	-	13.8846	9.7e-06	0.00754	CCCCCACCCCTACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	54	67	+	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	54	67	+	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	48	61	-	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	51	64	-	13.8846	9.7e-06	0.00754	CTCCCACCGCCGCG
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	84	97	+	13.8846	9.7e-06	0.00754	GAGCCGCCGCCGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	13.569	9.7e-06	0.0691	TCCGGAAGTA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	13.569	9.7e-06	0.0691	TCCGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	13.569	9.7e-06	0.0691	TCCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	13.569	9.7e-06	0.0691	TCCGGAAGTA
ETV1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	13.7818	9.7e-06	0.0662	ACCGGAAATG
ETV1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	13.7818	9.7e-06	0.0662	ACCGGAAATG
ETV1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	13.7818	9.7e-06	0.0662	ACCGGAAATG
ETV1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	13.7818	9.7e-06	0.0662	ACCGGAAATG
ERF	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	14.0714	9.7e-06	0.0584	GCCGGAAGTA
ERF	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	14.0714	9.7e-06	0.0584	GCCGGAAGTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	14.0714	9.7e-06	0.0584	GCCGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	14.0714	9.7e-06	0.0584	GCCGGAAGTA
ERF	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	14.0714	9.7e-06	0.0584	GCCGGAAGTA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	4	23	-	9.70642	9.7e-06	0.0376	TTCCACCCCACCCCCACCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	39	58	+	9.70642	9.7e-06	0.0376	TTCCACCCCACCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	39	58	+	9.70642	9.7e-06	0.0376	TTCCACCCCACCCCCACCCC
NR2F1	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	11	23	-	14.2653	9.7e-06	0.326	CAGGGGTCAAGGA
NR2F1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	48	60	+	14.2653	9.7e-06	0.326	CAGGGGTCAAGGA
NR2F1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	55	67	-	14.2653	9.7e-06	0.326	CAGGGGTCAAGGA
NR2F1	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	92	104	+	14.2653	9.7e-06	0.326	CAGGGGTCAAGGA
GATA1::TAL1	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	55	72	-	14.2545	9.7e-06	0.915	GTTATCTTCCAGGCCCAC
BATF3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	17	30	+	8.09091	9.71e-06	0.1	TCATGACGTAAGCG
BATF3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	40	53	+	8.09091	9.71e-06	0.1	TCATGACGTAAGCG
BATF3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	62	75	-	8.09091	9.71e-06	0.1	TCATGACGTAAGCG
BATF3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	85	98	-	8.09091	9.71e-06	0.1	TCATGACGTAAGCG
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	66	80	+	13.8814	9.71e-06	0.462	CAGGTAAAAATAGCA
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	78	92	-	13.9091	9.71e-06	0.048	GTCTCGCGCTGCTGG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	78	92	-	13.9091	9.71e-06	0.048	GTCTCGCGCTGCTGG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	78	92	-	13.9091	9.71e-06	0.048	GTCTCGCGCTGCTGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	78	92	-	13.9091	9.71e-06	0.048	GTCTCGCGCTGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	6	20	+	11.9138	9.71e-06	0.0283	CCCCTCCCCCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	6	20	+	11.9138	9.71e-06	0.0283	CCCCTCCCCCGCGCG
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	22	36	+	14.2245	9.72e-06	0.511	ACTTTGTTTACTCAA
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	22	36	+	14.2245	9.72e-06	0.511	ACTTTGTTTACTCAA
FOXA1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	17	31	-	14.2245	9.72e-06	0.511	ACTTTGTTTACTCAA
FOXA1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	84	98	+	14.2245	9.72e-06	0.511	ACTTTGTTTACTCAA
FOXA1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	79	93	-	14.2245	9.72e-06	0.511	ACTTTGTTTACTCAA
NFKB2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	16	28	+	13.4091	9.72e-06	0.196	GGGGGAAATCCCG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	3	16	+	10	9.72e-06	0.379	GGCCCCCCGCAGTG
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	3	16	+	10	9.72e-06	0.379	GGCCCCCCGCAGTG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	42	55	-	13.7887	9.73e-06	0.121	TCAAAGGGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	42	55	-	13.7887	9.73e-06	0.121	TCAAAGGGGAAGTT
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	14	28	+	13.6667	9.73e-06	0.156	TGACTTTCCTTTTTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	5	15	+	14.2885	9.73e-06	0.00492	TTCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	5	15	+	14.2885	9.73e-06	0.00492	TTCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	5	15	+	14.2885	9.73e-06	0.00492	TTCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	49	59	-	14.2885	9.73e-06	0.00492	TCCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	49	59	-	14.2885	9.73e-06	0.00492	TCCCCGCCTCT
Klf4	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	12	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	16	25	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	16	25	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	21	30	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	21	30	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	22	31	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	22	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	22	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	22	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	22	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	25	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	25	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	27	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	27	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	29	38	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	31	40	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	31	40	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	40	49	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	47	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	58	67	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	58	67	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	58	67	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	58	67	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	67	76	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	69	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	63	72	-	14.2857	9.74e-06	0.00867	TGGGTGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	72	81	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	72	81	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	75	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	86	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	88	97	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	93	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	94	-	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	103	112	+	14.2857	9.74e-06	0.00867	GGGGCGGGGT
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	71	84	-	14.2241	9.74e-06	0.125	CTGCTGGGAAGGCG
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	71	84	-	14.2241	9.74e-06	0.125	CTGCTGGGAAGGCG
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	22	36	-	12.7	9.74e-06	0.09	CGCCCCCTCCCGCGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	79	93	+	12.7	9.74e-06	0.09	CGCCCCCTCCCGCGC
MLX	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	14.2143	9.74e-06	0.188	AGCACGTGAC
MLX	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	14.2143	9.74e-06	0.188	AGCACGTGAC
SCRT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	18	30	+	12.541	9.74e-06	0.673	GCGCGACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	18	30	+	12.541	9.74e-06	0.673	GCGCGACAGGTGG
PKNOX2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	+	9.47541	9.74e-06	0.598	TGACATGTGTCC
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	-	9.47541	9.74e-06	0.598	TGACATGTGTCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	-	13.8364	9.74e-06	0.0397	AGCCCGAGGCC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	40	52	+	9.16327	9.74e-06	0.233	CGGGGGAACCCCT
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	15	26	+	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	15	26	+	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	35	46	+	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	35	46	+	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	44	-	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	44	-	13.8909	9.74e-06	0.0992	CGTGACGTCACA
Creb5	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	100	-	13.8909	9.74e-06	0.0992	CGTGACGTCACA
KLF14	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	87	100	+	13.3448	9.75e-06	0.0168	CGCCCCGCCCCTTG
KLF14	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	15	28	-	13.3448	9.75e-06	0.0168	CGCCCCGCCCCTTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	16	29	-	13.3448	9.75e-06	0.0168	CGCCCCGCCCCTTG
PLAG1	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	66	79	-	11.1327	9.75e-06	0.0605	GGGACGCTAGGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	78	91	-	11.1327	9.75e-06	0.0605	GGGGCGCACGGCGG
TEAD1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	51	60	-	12.8387	9.75e-06	0.741	CGCATTCCTC
TEAD1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	74	83	-	12.8387	9.75e-06	0.741	CGCATTCCTC
TEAD1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	32	41	+	12.8387	9.75e-06	0.741	CGCATTCCTC
TEAD1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	55	64	+	12.8387	9.75e-06	0.741	CGCATTCCTC
MAX	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	13.7885	9.75e-06	0.276	ACCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	13.7885	9.75e-06	0.276	ACCACGTGAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	4	13	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	31	40	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	31	40	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	31	40	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	31	40	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	28	37	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	43	52	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	43	52	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	43	52	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	36	45	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	45	54	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	36	45	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	36	45	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	36	45	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	51	60	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	67	76	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	70	79	+	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	63	72	-	13.9725	9.75e-06	0.0237	CTCCCCCCAC
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	37	53	-	7.33333	9.75e-06	0.3	AAGGTCGCCCCGCCCCT
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	37	53	-	7.33333	9.75e-06	0.3	AAGGTCGCCCCGCCCCT
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	37	53	-	7.33333	9.75e-06	0.3	AAGGTCGCCCCGCCCCT
ESR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	37	53	-	7.33333	9.75e-06	0.3	AAGGTCGCCCCGCCCCT
ZNF263	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	20	40	-	13.1837	9.76e-06	0.00622	GGGGGCTGAGGGCGGAGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	47	67	+	13.1837	9.76e-06	0.00622	GAGAGAGGAAGAGGAAGGAAC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	47	67	+	13.1837	9.76e-06	0.00622	GAGAGAGGAAGAGGAAGGAAC
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	30	50	-	13.1837	9.76e-06	0.00622	GGGAGAGAGGGAGGGAAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	31	51	-	13.1837	9.76e-06	0.00622	GAGAGAGGAAGAGGAAGGAAC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	31	51	-	13.1837	9.76e-06	0.00622	GAGAGAGGAAGAGGAAGGAAC
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	64	84	+	13.1837	9.76e-06	0.00622	GAGAGAGGAAGAGGAAGGAAC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	65	85	+	13.1837	9.76e-06	0.00622	GGGAGAGAGGGAGGGAAGGAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	75	95	+	13.1837	9.76e-06	0.00622	GGGGGCTGAGGGCGGAGAGAG
MAFK	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	11	25	+	14.2222	9.76e-06	0.567	GTTACTCAGCAAATA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	7	22	+	13.6	9.76e-06	0.0305	CCACGCCCCCCCGCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	43	58	+	13.6	9.76e-06	0.0305	CCACGCCCCCCCGCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	43	58	+	13.6	9.76e-06	0.0305	CCACGCCCCCCCGCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	63	78	-	13.6	9.76e-06	0.0305	CCACGCCCCCCCGCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	63	78	-	13.6	9.76e-06	0.0305	CCACGCCCCCCCGCCC
Six3	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	17	33	+	13.8026	9.77e-06	1	GGCAGGGTATCAAATCT
EGR3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	16	30	-	11.8966	9.77e-06	0.0283	CCCCACCCCCGCTCA
EGR3	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	53	67	-	11.8966	9.77e-06	0.0283	CTCCGCCCCCTCGCC
EGR3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	85	99	+	11.8966	9.77e-06	0.0283	CCCCACCCCCGCTCA
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	23	37	+	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	23	37	+	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	23	37	+	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	34	48	-	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	34	48	-	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	34	48	-	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
ZIC4	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	78	92	-	13.7273	9.77e-06	0.0974	CCCCCCCCGCTGTCG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	12	29	-	-5.05263	9.78e-06	0.0207	AGAGGGAGGGAAAGAATG
Rfx1	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	7	20	-	13.6897	9.78e-06	0.0897	GGAGCCATGGTAAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	2	12	+	14.1967	9.78e-06	0.0275	CCGGAAGGGGC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	2	12	+	14.1967	9.78e-06	0.0275	CCGGAAGGGGC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	44	54	-	14.1967	9.78e-06	0.0275	CCGGAAGGGGC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	61	71	+	14.1967	9.78e-06	0.0275	CCGGAAGGGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	61	71	+	14.1967	9.78e-06	0.0275	CCGGAAGGGGC
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	37	-	13.4143	9.79e-06	0.0797	TTGGGGCAGAGGCCA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	37	-	13.4143	9.79e-06	0.0797	TTGGGGCAGAGGCCA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	93	107	+	13.4143	9.79e-06	0.0797	TTGGGGCAGAGGCCA
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	18	29	+	13.1429	9.79e-06	0.0747	TCTGACGTCACA
ELK4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	12	22	+	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	29	39	+	14.2727	9.79e-06	0.0308	TCATTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	29	39	+	14.2727	9.79e-06	0.0308	TCATTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	22	32	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	22	32	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	22	32	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	76	86	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	76	86	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
ELK4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	93	103	-	14.2727	9.79e-06	0.0308	CGGCTTCCGGG
CEBPE	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	+	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	-	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	-	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	-	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	-	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPE	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	+	14.3636	9.79e-06	0.702	GTTACGCAAT
CEBPB	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	+	14.86	9.79e-06	0.744	GTTACGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	-	14.86	9.79e-06	0.744	GTTACGCAAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	-	14.86	9.79e-06	0.744	GTTACGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	-	14.86	9.79e-06	0.744	GTTACGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	-	14.86	9.79e-06	0.744	GTTACGCAAT
CEBPB	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	+	14.86	9.79e-06	0.744	GTTACGCAAT
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	4	18	-	13.9483	9.8e-06	0.00439	ATCCCACCCCCACCC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	29	43	-	13.9483	9.8e-06	0.00439	GTCCCTCCCTCTCTG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	81	91	+	14.3939	9.8e-06	0.766	CAGTAAACAAA
Tcf21	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	57	70	-	12.5658	9.8e-06	0.557	GCAACAGCTGCCAA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	10	23	-	13.8654	9.81e-06	0.00759	TCGCCACCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	47	60	+	13.8654	9.81e-06	0.00759	CCCCCTCCTCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	47	60	+	13.8654	9.81e-06	0.00759	CCCCCTCCTCCTGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	65	78	-	13.8654	9.81e-06	0.00759	GAGCCGCCCCCTGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	84	97	+	13.8654	9.81e-06	0.00759	ACTCCTCCTCCGCC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	51	71	+	13.2581	9.81e-06	0.115	ACTTAGTTTTTTTTTTTTTTT
EMX1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	+	11.4071	9.82e-06	1	CTTAATTACC
EMX1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	-	11.4071	9.82e-06	1	CTTAATTACC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	4	12	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	4	12	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	23	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	23	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	21	29	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	21	29	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	30	38	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	38	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	31	39	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	31	39	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	31	39	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	36	44	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	71	79	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	77	85	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	83	91	-	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	102	110	+	15.1379	9.82e-06	0.216	ATGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	102	110	+	15.1379	9.82e-06	0.216	ATGAGTCAT
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	24	34	+	14.3265	9.82e-06	0.219	TGTTCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	24	34	+	14.3265	9.82e-06	0.219	TGTTCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	24	34	+	14.3265	9.82e-06	0.219	TGTTCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	24	34	+	14.3265	9.82e-06	0.219	TGTTCCAAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	24	34	+	14.3265	9.82e-06	0.219	TGTTCCAAGAA
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	61	77	-	10.2545	9.82e-06	0.0105	CTGGCCCCACCCATATC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	94	104	+	14.5345	9.82e-06	0.027	GAGCGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	94	104	+	14.5345	9.82e-06	0.027	GAGCGGGAAGA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	61	74	-	13.7746	9.82e-06	0.121	TCCAAGGGGAAGTA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	79	92	+	13.1774	9.83e-06	0.341	CAGAAAGCAAAAGT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	40	57	+	-5.06579	9.83e-06	0.0207	GGGAAGGGGGAGGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	58	75	-	-5.06579	9.83e-06	0.0207	GGGAAGGGGGAGGGAGGG
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	28	42	+	14.3617	9.83e-06	0.254	GGCGATGAGGTAATT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	30	43	+	13.3276	9.84e-06	0.0168	AGGCCCGCCCACTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	30	43	+	13.3276	9.84e-06	0.0168	AGGCCCGCCCACTT
ELF4	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	20	-	13.5082	9.85e-06	0.0562	CTACCGGAAGTA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	72	83	+	13.5082	9.85e-06	0.0562	CTACCGGAAGTA
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	3	22	-	9.66055	9.86e-06	0.0376	ACCAATCCCACCCCCACCCA
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	39	53	+	13.8077	9.86e-06	0.793	CCCGGTTTCTGCAAA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	45	58	+	9.63636	9.86e-06	0.118	CAAATAAGGAAGTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	45	58	+	9.63636	9.86e-06	0.118	CAAATAAGGAAGTT
MTF1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	21	34	+	11.3902	9.86e-06	0.5	TCTGCGCCCGACAC
MTF1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	81	94	-	11.3902	9.86e-06	0.5	TCTGCGCCCGACAC
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	23	33	+	14.2759	9.86e-06	0.347	CAATCAGAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	23	33	+	14.2759	9.86e-06	0.347	CAATCAGAGCA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	40	50	+	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	40	50	+	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	40	50	+	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	40	50	+	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	22	32	-	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	22	32	-	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	22	32	-	14.2759	9.86e-06	0.347	CAACCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	22	32	-	14.2759	9.86e-06	0.347	CAACCACAGCA
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	96	109	-	12.5526	9.87e-06	0.557	ACCACAGCTGTTAA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	96	109	-	12.5526	9.87e-06	0.557	ACCACAGCTGTTAA
ZIC4	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	31	-	13.7091	9.87e-06	0.0974	CGCCCCCCGCAGGCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	60	74	+	13.7091	9.87e-06	0.0974	CGCCCCCCGCAGGCC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	+	13.6735	9.87e-06	0.0857	CCCCCCCAGGCA
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	14.5192	9.87e-06	0.0996	GTCACGTGCT
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	14.5192	9.87e-06	0.0996	GTCACGTGCT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	31	51	+	13.1633	9.87e-06	0.00626	TGGGGAAGTGGAGAGTGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	55	75	-	13.1633	9.87e-06	0.00626	GAGGAAGGGAAGGGATGGTGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	55	75	-	13.1633	9.87e-06	0.00626	GAGGAAGGGAAGGGATGGTGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	91	111	+	13.1633	9.87e-06	0.00626	GAGGGAGGACCAGGAATGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	91	111	+	13.1633	9.87e-06	0.00626	GAGGGAGGACCAGGAATGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	91	111	+	13.1633	9.87e-06	0.00626	GAGGGAGGACCAGGAATGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	91	111	+	13.1633	9.87e-06	0.00626	GAGGGAGGACCAGGAATGGAG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	70	83	-	8.0303	9.87e-06	0.1	ATCTGACGTCATCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	70	83	-	8.0303	9.87e-06	0.1	ATCTGACGTCATCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	22	38	+	10.2364	9.88e-06	0.0105	TACTCCCCGCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	41	57	-	10.2364	9.88e-06	0.0105	TACTCCCCGCCCCCCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	55	69	-	12.9344	9.88e-06	0.0308	GGCCCCGCCCCCCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	55	69	-	12.9344	9.88e-06	0.0308	GGCCCCGCCCCCCCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	11	22	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	11	22	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	20	31	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	20	31	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	35	-	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	41	52	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	74	-	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	74	-	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	80	91	+	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	95	-	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	104	-	13.4918	9.88e-06	0.0562	CGCCCGGAAGTG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	16	26	+	13.8182	9.88e-06	0.0397	AGCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	16	26	+	13.8182	9.88e-06	0.0397	AGCCTCGGGCA
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	14	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	14	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	28	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	28	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	28	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	28	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	28	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	29	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	35	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	40	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	55	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	55	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	73	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	73	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	80	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	86	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	104	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	109	+	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	6	16	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	11	21	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	11	21	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	11	21	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	11	21	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	15	25	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	15	25	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	15	25	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	15	25	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	15	25	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	16	26	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	16	26	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	16	26	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	20	30	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	20	30	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	20	30	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	20	30	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	29	39	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	31	41	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	32	42	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	32	42	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	32	42	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	32	42	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	35	45	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	60	70	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	60	70	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	75	85	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	80	90	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	85	95	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	86	96	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	87	97	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	101	111	-	13.5691	9.89e-06	0.00936	GCCCCGCCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	23	33	-	14.1667	9.89e-06	0.0388	AGCTACACCCA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	85	98	-	11.0918	9.9e-06	0.0605	GGGTGTCTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	85	98	-	11.0918	9.9e-06	0.0605	GGGTGTCTCGGGGA
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	6	13	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	6	13	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	15	22	+	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	30	37	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	30	37	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	51	58	+	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	57	64	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	78	85	+	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	93	100	-	12.4605	9.9e-06	0.384	GGACGTGC
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	102	109	+	12.4605	9.9e-06	0.384	GGACGTGC
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	12	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	12	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	16	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	16	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	19	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	21	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	25	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	25	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	25	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	25	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	28	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	28	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	30	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	30	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	30	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	30	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	33	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	34	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	36	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	37	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	37	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	38	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	38	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	38	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	38	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	38	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	42	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	52	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	52	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	55	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	55	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	55	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	55	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	55	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	56	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	56	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	57	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	57	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	62	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	69	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	71	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	78	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	78	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	78	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	78	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	82	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	84	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	90	+	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	104	+	14.8197	9.9e-06	0.0977	GCCACGTG
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	14.431	9.9e-06	0.16	GCCACGTGCG
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	14.431	9.9e-06	0.16	GCCACGTGCG
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	18	26	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	18	26	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	11	19	-	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	34	42	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	73	81	-	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	81	89	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	93	101	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	93	101	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	96	104	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	96	104	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	96	104	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	96	104	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	96	104	+	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	103	111	-	11.3421	9.9e-06	0.192	CTGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	103	111	-	11.3421	9.9e-06	0.192	CTGCCCGGA
Mycn	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	9	16	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	11	18	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	11	18	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	14	21	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	25	32	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	25	32	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	25	32	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	25	32	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	25	32	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	31	38	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	32	39	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	33	40	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	34	41	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	34	41	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	34	41	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	37	44	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	44	51	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	48	55	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	51	58	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	51	58	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	51	58	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	51	58	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	53	60	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	53	60	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	62	69	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	63	70	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	79	86	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	81	88	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	85	92	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	99	106	-	14.8197	9.9e-06	0.0977	GCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	103	110	-	14.8197	9.9e-06	0.0977	GCCACGTG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	29	40	+	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	29	40	+	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	29	40	+	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	29	40	+	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	43	54	-	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	43	54	-	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	43	54	-	14.1837	9.91e-06	0.117	TGCATGGGGGAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	43	54	-	14.1837	9.91e-06	0.117	TGCATGGGGGAG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	20	33	+	13.8462	9.91e-06	0.00765	TCCCCTCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	45	58	-	13.8462	9.91e-06	0.00765	TCCCCTCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	45	58	-	13.8462	9.91e-06	0.00765	TCCCCTCCCCTGCC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	77	+	14.3673	9.91e-06	0.0816	GGCAGCTGCAA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	77	+	14.3673	9.91e-06	0.0816	GGCAGCTGCAA
ELF3	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	31	43	-	13.0517	9.91e-06	0.108	GCCCCGGAAGTAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	18	31	-	13.3103	9.92e-06	0.0168	CGGCCCGCCCCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	18	31	-	13.3103	9.92e-06	0.0168	CGGCCCGCCCCCTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	22	35	-	13.3103	9.92e-06	0.0168	CGGCCCGCCCCCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	22	35	-	13.3103	9.92e-06	0.0168	CGGCCCGCCCCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	22	35	-	13.3103	9.92e-06	0.0168	CGGCCCGCCCCCTT
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	8	22	-	13.931	9.92e-06	0.00443	CCTCCTCCTCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	44	58	+	13.931	9.92e-06	0.00443	CGCCCGCCCTTCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	58	72	+	13.931	9.92e-06	0.00443	TTTCCGCCCCCTACG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	53	67	-	13.931	9.92e-06	0.00443	GCCCCGCCCTGCTGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	53	67	-	13.931	9.92e-06	0.00443	GCCCCGCCCTGCTGG
SP2	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	57	71	-	13.931	9.92e-06	0.00443	CGCCCGCCCTTCCCT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	36	53	+	-5.09211	9.92e-06	0.0207	AGGAGGAAGGAGGGAGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	62	79	-	-5.09211	9.92e-06	0.0207	AGGAGGAAGGAGGGAGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	40	50	+	14.2545	9.93e-06	0.0311	GGACTTCCGGG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	1	14	+	8.9878	9.93e-06	0.238	GGGGTCAGGGGTGA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	1	14	+	8.9878	9.93e-06	0.238	GGGGTCAGGGGTGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	33	47	+	12.6571	9.93e-06	0.0907	GCCCTCCCTCTGCGC
STAT3	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	61	71	-	14.2653	9.93e-06	0.16	CTGCTTGGAAG
SP4	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	51	67	-	10.2182	9.94e-06	0.0105	GCCGCCCCGCCCATCAC
ELK3	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	13.8103	9.95e-06	0.0544	ACCGGAAATG
ELK3	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	13.8103	9.95e-06	0.0544	ACCGGAAATG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	20	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	13	22	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	13	22	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	13	22	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	13	22	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	15	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	15	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	22	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	28	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	39	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	40	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	40	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	45	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	57	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	51	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	55	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	55	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	58	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	58	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	58	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	58	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	58	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	59	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	59	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	69	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	60	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	64	73	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	64	73	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	64	73	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	64	73	+	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	85	-	14.1475	9.95e-06	0.102	GGTCACGTGG
Arntl	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	109	+	14.1475	9.95e-06	0.102	GGTCACGTGG
ELK3	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	13.8103	9.95e-06	0.0544	ACCGGAAATG
ELK3	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	13.8103	9.95e-06	0.0544	ACCGGAAATG
SP8	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	3	14	-	13.7763	9.95e-06	0.0146	CACACTCCCCCT
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	3	17	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCAAAG
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	29	43	+	12.918	9.95e-06	0.0308	GGCCCCGCCCCAAAG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	19	33	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCCGA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	19	33	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCCGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	19	33	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCCGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	19	33	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCCGA
Klf12	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	51	65	+	12.918	9.95e-06	0.0308	GGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	50	64	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	50	64	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCCAGC
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	72	86	-	12.918	9.95e-06	0.0308	GGCCCCGCCCCAAAG
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	98	112	+	12.918	9.95e-06	0.0308	GGCCCCGCCCCAAAG
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	11	25	+	13.0984	9.95e-06	0.239	GTTACTCAGCAAATA
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	25	+	14.2041	9.96e-06	0.672	GTTGCACAACT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	25	+	14.2041	9.96e-06	0.672	GTTGCACAACT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	25	+	14.2041	9.96e-06	0.672	GTTGCACAACT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	56	66	-	14.2041	9.96e-06	0.672	GTTGCACAACT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	56	66	-	14.2041	9.96e-06	0.672	GTTGCACAACT
SP1	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	34	+	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	40	+	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	25	35	-	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	56	+	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	61	+	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	59	69	-	14.2692	9.96e-06	0.00501	GTCCCGCCCAC
FOXF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	34	47	+	14.3556	9.96e-06	1	CCTACGTAAACATG
FOXF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	34	47	+	14.3556	9.96e-06	1	CCTACGTAAACATG
YY1	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	53	64	-	14.0192	9.96e-06	0.0709	TAAGATGGCGGT
YY1	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	51	62	+	14.0192	9.96e-06	0.0709	TAAGATGGCGGT
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	79	93	+	11.8448	9.97e-06	0.0283	CCCCGCCCCCCCGCG
USF2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	11	21	-	14.2653	9.97e-06	0.0583	GTCACGTGGCT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	61	71	-	14.2653	9.97e-06	0.0583	GTCACGTGGCT
NFYA	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	6	23	+	13.3659	9.97e-06	0.061	TGGCCGCCCATTGGCTCC
FOS	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	-	14.7447	9.98e-06	0.169	TATGACTCATT
SP3	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	16	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	17	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	17	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	28	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	28	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	30	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	40	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	51	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	51	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	58	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	60	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	60	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	64	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	72	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	80	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	82	+	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	31	41	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	33	43	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	33	43	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	51	61	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	55	65	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	56	66	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	56	66	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	57	67	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	64	74	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	75	85	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	98	108	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	99	109	-	13.5122	9.98e-06	0.00936	CCCCCTCCCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	59	69	+	14.1803	9.99e-06	0.0277	CCGGAAGTTGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	59	69	+	14.1803	9.99e-06	0.0277	CCGGAAGTTGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	59	69	+	14.1803	9.99e-06	0.0277	CCGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	59	69	+	14.1803	9.99e-06	0.0277	CCGGAAGTTGA
Bcl6	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	62	75	-	13.8871	9.99e-06	0.232	TTTCCTGGGAAGCA
IRF7	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	78	91	+	13.1452	9.99e-06	0.341	TGGAAAACGAAAAC
EGR4	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	25	40	+	13.5636	9.99e-06	0.0305	TCCCGCCCACCCCGCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	45	60	+	13.5636	9.99e-06	0.0305	CCCCGCCCCCGCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	45	60	+	13.5636	9.99e-06	0.0305	CCCCGCCCCCGCCGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	45	60	+	13.5636	9.99e-06	0.0305	CCCCGCCCCCGCCGCC
EGR4	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	52	67	+	13.5636	9.99e-06	0.0305	TCCCGCCCACCCCGCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	55	70	-	13.5636	9.99e-06	0.0305	CCCCGCCCCCGCCGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	+	13.8	9.99e-06	0.0397	CGCCTCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	+	13.8	9.99e-06	0.0397	CGCCTCGGGCT
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	87	101	+	3.05714	9.99e-06	0.649	GAGGTCAGAAGTCCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	4	24	-	13.1429	9.99e-06	0.00627	GAGGGAAAGAATGAAGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	22	42	-	13.1429	9.99e-06	0.00627	GGGGGGGGGGGGGGTGGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	24	44	-	13.1429	9.99e-06	0.00627	GGGGGCGGGAGGGCGGAGGAC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	45	65	-	13.1429	9.99e-06	0.00627	AAAGGAGCGGGAGCATGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	45	65	-	13.1429	9.99e-06	0.00627	AAAGGAGCGGGAGCATGGTGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	49	69	-	13.1429	9.99e-06	0.00627	GGGGAGGGAGGGGGAGGAGGT
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	46	66	+	13.1429	9.99e-06	0.00627	GGGGAGGGAGGGGGAGGAGGT
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	71	91	+	13.1429	9.99e-06	0.00627	GGGGGCGGGAGGGCGGAGGAC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	31	43	-	9.08163	1e-05	0.233	AGGGGACTTCCCT
ELF4	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	38	49	-	13.4426	1e-05	0.0562	ACCCAGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	66	77	+	13.4426	1e-05	0.0562	ACCCAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	66	77	+	13.4426	1e-05	0.0562	ACCCAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	66	77	+	13.4426	1e-05	0.0562	ACCCAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	66	77	+	13.4426	1e-05	0.0562	ACCCAGGAAGTG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	+	13.6429	1e-05	0.0857	CGCCCCGGGGCC
TFAP2C	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	-	13.6429	1e-05	0.0857	CGCCCCGGGGCC
TFAP2C	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	+	13.6429	1e-05	0.0857	CGCCCCGGGGCC
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	31	45	+	13.3714	1e-05	0.0797	CGGGGGGGGGGGGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	35	48	+	13.8269	1e-05	0.00769	GCCCCGCCCACAGT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	35	48	+	13.8269	1e-05	0.00769	GCCCCGCCCACAGT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	45	58	-	13.8269	1e-05	0.00769	GCCTCTCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	45	58	-	13.8269	1e-05	0.00769	GCCTCTCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	45	58	-	13.8269	1e-05	0.00769	GCCTCTCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	45	58	-	13.8269	1e-05	0.00769	GCCTCTCCCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	45	58	-	13.8269	1e-05	0.00769	GCCTCTCCCCCGCG
PLAG1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	39	52	-	11.0612	1e-05	0.0605	GGGGGTCAAGGGGC
PLAG1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	63	76	+	11.0612	1e-05	0.0605	GGGGGTCAAGGGGC
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	36	49	+	12.9848	1e-05	0.198	CCGCCACGTAATTG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	36	49	+	12.9848	1e-05	0.198	CCGCCACGTAATTG
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	28	41	-	12.9848	1e-05	0.198	CCGCCACGTAATTG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	28	41	-	12.9848	1e-05	0.198	CCGCCACGTAATTG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	74	87	+	12.9848	1e-05	0.198	CCGCCACGTAATTG
CREB3L1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	66	79	-	12.9848	1e-05	0.198	CCGCCACGTAATTG
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	7	17	-	14.1837	1e-05	0.074	GCCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	7	17	-	14.1837	1e-05	0.074	GCCATGTGACA
MEF2A	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	-	13.8065	1e-05	0.428	TCTATAATTAGC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	96	107	-	14.1667	1e-05	0.101	CACCGTCCGCAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	21	35	+	13.9138	1e-05	0.00447	GTCCCACCTCCTTCA
SP2	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	89	103	+	13.9138	1e-05	0.00447	TCCCCGCCCTTCTCT
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	-	13.9836	1e-05	0.0517	TCCCCGCCGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	+	13.9836	1e-05	0.0517	TCCCCGCCGGGCG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	52	66	+	12.4211	1e-05	0.105	TGAGTGAGTCAGCTG
RFX3	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	-	13.1515	1e-05	0.0739	GGGAGCCATGGTAACT
TCF7L2	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	41	54	+	14.1091	1e-05	1	GCACATGAAAGGGC
TCF7L2	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	36	49	-	14.1091	1e-05	1	GCACATGAAAGGGC
TCF7L2	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	66	79	+	14.1091	1e-05	1	GCACATGAAAGGGC
TCF7L2	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	61	74	-	14.1091	1e-05	1	GCACATGAAAGGGC
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	86	95	+	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	86	95	+	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	86	95	+	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	17	26	-	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	17	26	-	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	17	26	-	13.7541	1e-05	0.172	TATGACGTAG
Crem	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	73	82	-	13.7541	1e-05	0.172	TATGACGTAG
ZIC1	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	52	65	+	11.6383	1e-05	0.0959	TCCCGCCCGCGGCG
Myog	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	32	42	-	14.3469	1e-05	0.0816	GGCAGCTGGAC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	80	90	-	14.3469	1e-05	0.0816	GGCAGCTGGAC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	80	90	-	14.3469	1e-05	0.0816	GGCAGCTGGAC
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	80	90	-	14.3469	1e-05	0.0816	GGCAGCTGGAC
TP63	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	-	6.44828	1.01e-05	0.559	CACAAGCCCGGGCTTGTC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	60	71	+	13.6	1.01e-05	0.0673	AACCCGGAAACC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	24	34	+	14.4828	1.01e-05	0.027	GCGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	24	34	+	14.4828	1.01e-05	0.027	GCGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	24	34	+	14.4828	1.01e-05	0.027	GCGCGGGAGGC
Hic1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	95	103	+	12.9423	1.01e-05	0.516	ATGCCAACT
Hic1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	12	20	-	12.9423	1.01e-05	0.516	ATGCCAACT
FLI1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
FLI1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	14.4681	1.01e-05	0.0685	ACCGGAAGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	30	46	-	10.1818	1.01e-05	0.0106	TGAAACACGCCCCCGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	53	69	+	10.1818	1.01e-05	0.0106	TGAAACACGCCCCCGCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	2	19	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	2	19	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	2	19	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	2	19	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	44	61	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	44	61	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	44	61	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	44	61	+	-5.13158	1.01e-05	0.0207	GAACTGGAGGAAGGAGGG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	102	+	13.8	1.01e-05	0.0548	CGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	13	24	-	13.8	1.01e-05	0.0548	CGCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	-	13.8	1.01e-05	0.0548	TGCCCTCCGGCG
HSF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	45	57	-	13.3091	1.01e-05	1	TTCCAGAACCTCC
HSF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	45	57	-	13.3091	1.01e-05	1	TTCCAGAACCTCC
Nr5a2	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	1	15	-	13.8966	1.01e-05	0.264	GATCACAAGGTCAGG
EGR3	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	13	27	-	11.8103	1.01e-05	0.0283	GCCTGCCCACGCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	88	102	+	11.8103	1.01e-05	0.0283	GCCTGCCCACGCGCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	88	102	+	11.8103	1.01e-05	0.0283	GCCTGCCCACGCGCT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	-	14.7818	1.01e-05	0.105	AGTGACTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	-	14.7818	1.01e-05	0.105	AGTGACTCACC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	+	14.7818	1.01e-05	0.105	AGTGACTCACC
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	65	79	+	13.3571	1.01e-05	0.0797	TCGGGGCAGGGGTGA
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	+	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
RFX2	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	-	11.2714	1.01e-05	0.0878	CGCTGCCATGGAGACA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	12	26	-	13.6727	1.01e-05	0.0974	GCCGCCCCGCCGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	12	26	-	13.6727	1.01e-05	0.0974	GCCGCCCCGCCGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	12	26	-	13.6727	1.01e-05	0.0974	GCCGCCCCGCCGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	12	26	-	13.6727	1.01e-05	0.0974	GCCGCCCCGCCGGGC
NFYB	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	30	44	+	14.2308	1.01e-05	0.0838	CTCTGATCCAATCAG
SP1	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	1	11	-	14.2308	1.01e-05	0.00507	TCCCCACCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	3	13	-	14.2308	1.01e-05	0.00507	TCCCCACCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	85	+	14.2308	1.01e-05	0.00507	TCCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	85	+	14.2308	1.01e-05	0.00507	TCCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	85	+	14.2308	1.01e-05	0.00507	TCCCCACCCCT
CTCF	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	9	27	-	12.7705	1.01e-05	0.0647	TTCCCTCCAGGCGGCAGCG
CTCF	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	88	106	+	12.7705	1.01e-05	0.0647	TTCCCTCCAGGCGGCAGCG
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	-	13.931	1.01e-05	0.188	GTCACCTGAC
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	14	30	+	5.13636	1.01e-05	0.785	AGGCCAATGAGGGGGCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	14	30	+	5.13636	1.01e-05	0.785	AGGCCAATGAGGGGGCA
Myc	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	43	52	+	14.1455	1.01e-05	0.189	CCATGTGCTG
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	18	27	-	14.1455	1.01e-05	0.189	CCATGTGCTG
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	18	27	-	14.1455	1.01e-05	0.189	CCATGTGCTG
Myc	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	102	111	-	14.1455	1.01e-05	0.189	CCATGTGCTG
EGR2	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	16	26	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	20	30	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	24	34	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	24	34	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	24	34	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	24	34	+	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	81	91	-	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	89	99	-	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	89	99	-	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	89	99	-	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	89	99	-	13.5172	1.01e-05	0.0586	ACGCGCACGCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	100	110	-	13.5172	1.01e-05	0.0586	ACGCCTCCGCA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	64	79	+	13.5455	1.01e-05	0.0305	CCCCGCCCCCGCGGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	64	79	+	13.5455	1.01e-05	0.0305	CCCCGCCCCCGCGGCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	22	+	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	32	42	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	93	103	-	14	1.01e-05	0.00942	CCCACACCCAC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.6901	1.01e-05	0.0637	TCCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.6901	1.01e-05	0.0637	TCCGGAAGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.6901	1.01e-05	0.0637	TCCGGAAGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.6901	1.01e-05	0.0637	TCCGGAAGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.6901	1.01e-05	0.0637	TCCGGAAGTG
JUNB	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	13	23	+	14.6122	1.01e-05	0.113	GAATGAGTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	15	25	+	14.6122	1.01e-05	0.113	TGGTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	29	39	+	14.6122	1.01e-05	0.113	TGGTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	29	39	+	14.6122	1.01e-05	0.113	TGGTGACTCAC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	19	29	-	14.6122	1.01e-05	0.113	AGATGAGTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	46	-	14.6122	1.01e-05	0.113	TGGTGACTCAC
JUNB	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	92	102	-	14.6122	1.01e-05	0.113	GAATGAGTCAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	22	42	+	13.1224	1.01e-05	0.00627	AGAGGAGGGGGCAGGAGACAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	44	64	+	13.1224	1.01e-05	0.00627	GAAGGTGGAAAAGAGGAAGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	44	64	+	13.1224	1.01e-05	0.00627	GAAGGTGGAAAAGAGGAAGCA
SP4	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	3	19	+	10.1636	1.01e-05	0.0106	AACGCCCCGCCCTCCGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	48	64	-	10.1636	1.01e-05	0.0106	AACGCCCCGCCCTCCGC
SP4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	60	76	-	10.1636	1.01e-05	0.0106	TAGTCCCCGCCCCATTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	26	39	+	11.617	1.01e-05	0.0959	GGCCCCACGCTGCT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	26	39	+	11.617	1.01e-05	0.0959	GGCCCCACGCTGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	26	39	+	11.617	1.01e-05	0.0959	GGCCCCACGCTGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	26	39	+	11.617	1.01e-05	0.0959	GGCCCCACGCTGCT
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	13	25	+	14.2041	1.01e-05	0.326	GAGAGGTCAGAGG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	13	25	+	14.2041	1.01e-05	0.326	GAGAGGTCAGAGG
Gata4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	46	56	-	14.2931	1.01e-05	0.641	CCTTATCTCAT
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	46	56	-	14.2931	1.01e-05	0.641	CCTTATCTCAT
Gata4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	46	56	-	14.2931	1.01e-05	0.641	CCTTATCTCAT
Gata4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	46	56	-	14.2931	1.01e-05	0.641	CCTTATCTCAT
Gata4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	46	56	-	14.2931	1.01e-05	0.641	CCTTATCTCAT
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	5	18	+	13.8077	1.01e-05	0.00775	TCCCCACCTACTCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	70	+	13.8077	1.01e-05	0.00775	GCTCCTCCCCCTTC
EGR1	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	45	58	-	13.8077	1.01e-05	0.00775	GCTCCTCCCCCTTC
TAL1::TCF3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	45	56	+	14.2809	1.01e-05	0.99	CCACCATCTGCT
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	22	32	-	13.8727	1.01e-05	0.00646	ACGCCGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	22	32	-	13.8727	1.01e-05	0.00646	ACGCCGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	22	32	-	13.8727	1.01e-05	0.00646	ACGCCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	22	32	-	13.8727	1.01e-05	0.00646	ACGCCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	47	57	+	13.8727	1.01e-05	0.00646	GCGCATGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	47	57	+	13.8727	1.01e-05	0.00646	GCGCATGCCCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	88	98	+	13.8727	1.01e-05	0.00646	ACGCCGGCGCA
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	11.1469	1.01e-05	0.0721	CGCACGTGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	11.1469	1.01e-05	0.0721	CGCACGTGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	11.1469	1.01e-05	0.0721	CGCACGTGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	11.1469	1.01e-05	0.0721	CGCACGTGCC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	2	15	+	14.197	1.01e-05	0.022	GAGGGCGGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	2	15	+	14.197	1.01e-05	0.022	GAGGGCGGGGCCTT
Zfx	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	36	49	-	14.197	1.01e-05	0.022	CGCCGCCCGGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	66	79	+	14.197	1.01e-05	0.022	CGCCGCCCGGCCTC
JUND	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	+	14.766	1.01e-05	0.169	TCTGACTCATC
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	+	14.766	1.01e-05	0.169	TCTGACTCATC
JUND	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	+	14.766	1.01e-05	0.169	TCTGACTCATC
SP2	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	51	65	+	13.8966	1.01e-05	0.00451	CTCCCGCCCCGCCTG
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	40	54	-	13.8966	1.01e-05	0.00451	TCCCCACCCCGCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	44	58	-	13.8966	1.01e-05	0.00451	CCCCCGCCCATCCTG
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	61	75	+	13.8966	1.01e-05	0.00451	TCCCCACCCCGCCCC
SP2	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	50	64	-	13.8966	1.01e-05	0.00451	CTCCCGCCCCGCCTG
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	19	32	+	13.6538	1.01e-05	0.446	GAAACCACGTCATC
XBP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	19	32	+	13.6538	1.01e-05	0.446	GAAACCACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	32	45	-	13.6538	1.01e-05	0.446	GAAACCACGTCATC
XBP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	32	45	-	13.6538	1.01e-05	0.446	GAAACCACGTCATC
XBP1	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	70	83	+	13.6538	1.01e-05	0.446	GAAACCACGTCATC
XBP1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	83	96	-	13.6538	1.01e-05	0.446	GAAACCACGTCATC
STAT1	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	92	102	+	14.5455	1.02e-05	0.167	TTTCTGGGAAC
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	49	62	+	12.6818	1.02e-05	0.203	AAGGTCACAGGTCT
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	49	62	+	12.6818	1.02e-05	0.203	AAGGTCACAGGTCT
NFYA	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	24	41	+	13.3293	1.02e-05	0.061	CGCCTGCGGATTGGCTAC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	74	91	-	13.3293	1.02e-05	0.061	CGCCTGCGGATTGGCTAC
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	74	91	-	13.3293	1.02e-05	0.061	CGCCTGCGGATTGGCTAC
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	74	91	-	13.3293	1.02e-05	0.061	CGCCTGCGGATTGGCTAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	4	13	-	13.9633	1.02e-05	0.0243	GCCCCCCCTC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	15	24	+	13.9633	1.02e-05	0.0243	GCCCCCCCTC
ZNF740	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	39	48	+	13.9633	1.02e-05	0.0243	GCCCCCCCTC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	32	41	-	13.9633	1.02e-05	0.0243	GCCCCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	67	76	-	13.9633	1.02e-05	0.0243	GCCCCCCCTC
USF2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	43	+	14.2449	1.02e-05	0.0591	CTCACGTGACT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	66	+	9.56881	1.02e-05	0.0376	CCCCCCCCGCCCCCCCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	66	+	9.56881	1.02e-05	0.0376	CCCCCCCCGCCCCCCCCCCC
SP4	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	3	19	-	10.1455	1.02e-05	0.0107	GCGGCCCCGCCCCAAAG
SP4	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	27	43	+	10.1455	1.02e-05	0.0107	GCGGCCCCGCCCCAAAG
SP4	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	72	88	-	10.1455	1.02e-05	0.0107	GCGGCCCCGCCCCAAAG
SP4	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	96	112	+	10.1455	1.02e-05	0.0107	GCGGCCCCGCCCCAAAG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	28	-	8.48936	1.02e-05	0.268	GGGTTCAAAGCTCA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	28	-	8.48936	1.02e-05	0.268	GGGTTCAAAGCTCA
RXRG	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	87	100	+	8.48936	1.02e-05	0.268	GGGTTCAAAGCTCA
Hoxd3	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	68	83	-	13.3896	1.02e-05	1	TTCTGTTAATTAATCT
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	28	+	13.0816	1.02e-05	0.0747	TCTGACGTCATG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	28	+	13.0816	1.02e-05	0.0747	TCTGACGTCATG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	37	+	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	37	+	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	59	69	-	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	59	69	-	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	72	82	-	14.4082	1.02e-05	0.101	GACAGCTGCGT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	99	+	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	99	+	14.4082	1.02e-05	0.101	AGCAGCTGGGG
Tcf12	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	107	+	14.4082	1.02e-05	0.101	AGCAGCTGGGG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	76	-	13.2	1.02e-05	0.0978	ACGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	76	-	13.2	1.02e-05	0.0978	ACGCGGAAGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	68	85	-	-5.17105	1.02e-05	0.0209	GGAAATGAGGAAGCAGTA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	68	85	-	-5.17105	1.02e-05	0.0209	GGAAATGAGGAAGCAGTA
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	-	11.2429	1.02e-05	0.0878	CGTTGTCAGGGCGACC
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	-	11.2429	1.02e-05	0.0878	CGTTGTCAGGGCGACC
GATA2	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	66	79	-	14.1273	1.02e-05	0.951	TGGTGGTTATCTGC
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	93	107	-	13.4955	1.02e-05	0.134	CCGGGGCAGGGGGCT
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	8	22	+	13.4955	1.02e-05	0.134	CCGGGGCAGGGGGCT
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	5	15	+	14.1636	1.02e-05	0.0318	GTGCTTCCGGC
ELK4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	110	-	14.1636	1.02e-05	0.0318	GTGCTTCCGGC
ELF1	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	59	70	+	13.5818	1.02e-05	0.0673	AACCAGGAAGTT
ELF1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	66	77	+	13.5818	1.02e-05	0.0673	CGCCCGGAAGTA
Rfx1	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	36	49	+	13.6207	1.02e-05	0.0897	ATTGTCATGGAAAC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	37	50	+	13.6207	1.02e-05	0.0897	GTTGCCATGACAGC
Rfx1	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	66	79	-	13.6207	1.02e-05	0.0897	ATTGTCATGGAAAC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	33	45	-	13.2879	1.02e-05	0.196	AGGGGGAACCCCA
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	33	45	-	13.2879	1.02e-05	0.196	AGGGGGAACCCCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	29	39	+	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	29	39	+	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	11	21	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	11	21	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	11	21	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	11	21	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	11	21	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	30	40	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	30	40	-	13.4828	1.02e-05	0.0586	CCGCCCACTCG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	41	55	+	14.2115	1.02e-05	0.0838	ACAAGAACCAATCAC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	41	55	+	14.2115	1.02e-05	0.0838	ACAAGAACCAATCAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	25	43	+	13.6452	1.02e-05	0.137	CGGGGCAGCGGGGCCCGAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	25	43	+	13.6452	1.02e-05	0.137	CGGGGCAGCGGGGCCCGAC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	+	13.8367	1.02e-05	0.154	GATGACTCATA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	4	17	+	13.2414	1.02e-05	0.0172	AGCCCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	4	17	+	13.2414	1.02e-05	0.0172	AGCCCCGCCCCCGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	4	17	+	13.2414	1.02e-05	0.0172	AGCCCCGCCCCCGA
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	4	17	+	13.2414	1.02e-05	0.0172	AGCCCCGCCCCCGA
KLF14	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	98	111	-	13.2414	1.02e-05	0.0172	AGCCCCGCCCCCGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	20	40	-	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	66	86	-	13.102	1.02e-05	0.00627	TGGAGAGGGCGAGGGAGGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	78	98	-	13.102	1.02e-05	0.00627	GGGGGCTGGGGGGAGGGGTAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	105	-	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	105	-	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	105	-	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	105	-	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	5	25	+	13.102	1.02e-05	0.00627	GGAGAAAGGGAGCAGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	5	25	+	13.102	1.02e-05	0.00627	GGAGAAAGGGAGCAGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	17	37	+	13.102	1.02e-05	0.00627	GGGGGCTGGGGGGAGGGGTAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	20	40	+	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	20	40	+	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	20	40	+	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	20	40	+	13.102	1.02e-05	0.00627	AGGGAAAGGAGGGGGTGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	24	44	+	13.102	1.02e-05	0.00627	GGGAGAGGGGTTGGCGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	31	51	+	13.102	1.02e-05	0.00627	GAAGCAGGGGGAGTCAGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	32	52	+	13.102	1.02e-05	0.00627	GGAGGAGGAGCCTCTGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	32	52	+	13.102	1.02e-05	0.00627	GGAGGAGGAGCCTCTGAGGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	60	77	-	-5.18421	1.02e-05	0.0209	CGAGGGAGGGAGGGTAGG
ZNF143	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	20	35	-	8.62069	1.02e-05	0.25	TACCCAGGAAGCATCT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	93	103	+	13.7818	1.02e-05	0.0397	CCCCCCAGGCA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	95	106	-	13.9143	1.02e-05	0.217	GGCGACCCCCAA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	95	106	-	13.9143	1.02e-05	0.217	GGCGACCCCCAA
ZBTB7A	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	9	20	+	13.9143	1.02e-05	0.217	GGCGACCCCCAA
NRF1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	13	23	+	13.8545	1.02e-05	0.00652	GCGCGTGTGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	65	75	-	13.8545	1.02e-05	0.00652	GCGCGTGTGCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	29	39	-	13.9483	1.02e-05	0.00942	TCCACTCCCCC
ATF7	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	17	30	+	12.9286	1.02e-05	0.0863	CCCTGACGTCACCC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	61	74	-	12.9286	1.02e-05	0.0863	CTGTGACGTAACAC
ATF7	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	85	98	-	12.9286	1.02e-05	0.0863	CCCTGACGTCACCC
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	7	16	+	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	10	19	+	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	10	19	+	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	37	46	+	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	37	46	+	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	49	58	-	12.7172	1.03e-05	0.103	GGAGGGGAAA
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	69	78	-	12.7172	1.03e-05	0.103	GGAGGGGAAA
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	42	55	-	13.5574	1.03e-05	0.365	CATCCCACGGGAAT
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	42	55	-	13.5574	1.03e-05	0.365	CATCCCACGGGAAT
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	42	55	-	13.5574	1.03e-05	0.365	CATCCCACGGGAAT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	42	55	-	13.5574	1.03e-05	0.365	CATCCCACGGGAAT
EBF1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	60	73	+	13.5574	1.03e-05	0.365	CATCCCACGGGAAT
TEAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	3	12	-	12.4194	1.03e-05	0.651	CACATTCCTG
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	3	12	-	12.4194	1.03e-05	0.651	CACATTCCTG
TEAD4	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	51	60	-	12.4194	1.03e-05	0.651	CGCATTCCTC
TEAD4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	74	83	-	12.4194	1.03e-05	0.651	CGCATTCCTC
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	103	112	-	12.4194	1.03e-05	0.651	CACATTCCTG
TEAD4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	32	41	+	12.4194	1.03e-05	0.651	CGCATTCCTC
TEAD4	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	55	64	+	12.4194	1.03e-05	0.651	CGCATTCCTC
MSC	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	-	13.8659	1.03e-05	0.569	GACAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	-	13.8659	1.03e-05	0.569	GACAGCTGCT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	-	13.8659	1.03e-05	0.569	GACAGCTGCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	3	17	-	13.8793	1.03e-05	0.00453	GCCCCACCTCCCAGT
SP2	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	29	43	+	13.8793	1.03e-05	0.00453	GCTCCTCCCCGCCCC
SP2	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	30	44	+	13.8793	1.03e-05	0.00453	TTCCCTCCCACTCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	28	42	-	13.8793	1.03e-05	0.00453	GCACCGCCCCCAACC
SP2	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	43	57	+	13.8793	1.03e-05	0.00453	GTCCCACCTCCAGGC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	30	44	-	13.8793	1.03e-05	0.00453	GCACCGCCCCCAACC
SP2	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	47	61	+	13.8793	1.03e-05	0.00453	GCTCCACCCCTTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	51	65	+	13.8793	1.03e-05	0.00453	GCCCTGCCCCGCCCC
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	49	63	-	13.8793	1.03e-05	0.00453	GGCCCGCCCTGCCCT
SP2	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	54	68	-	13.8793	1.03e-05	0.00453	GCTCCACCCCTTCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	85	+	13.8793	1.03e-05	0.00453	GCACCGCCCCCAACC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	87	+	13.8793	1.03e-05	0.00453	GCACCGCCCCCAACC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	1	14	+	13.7885	1.03e-05	0.00778	GACCCGCCCCTGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	11	24	-	13.7885	1.03e-05	0.00778	GCCACGCCCACACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	11	24	-	13.7885	1.03e-05	0.00778	GCCACGCCCACACG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	11	24	-	13.7885	1.03e-05	0.00778	GCCACGCCCACACG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	40	+	13.7885	1.03e-05	0.00778	CTCCCACCCCCAGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	27	40	-	13.7885	1.03e-05	0.00778	GCCCCGCCCCTTCA
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	27	40	-	13.7885	1.03e-05	0.00778	CTGCCGCCGCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	41	54	-	13.7885	1.03e-05	0.00778	GACCCACCGCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	60	73	+	13.7885	1.03e-05	0.00778	CCGTCACCCCCTCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	75	88	+	13.7885	1.03e-05	0.00778	CTGCCGCCGCCACC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	101	114	-	13.7885	1.03e-05	0.00778	GACCCGCCCCTGCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	31	45	+	11.7586	1.03e-05	0.0283	CCCCGCCCTCGCAGC
LBX2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	11.3898	1.03e-05	0.895	GCCAATTAGA
LBX2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	11.3898	1.03e-05	0.895	GCCAATTAGA
GLIS1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	21	36	+	-0.423077	1.03e-05	0.294	CGACAGCTCACGATGC
GLIS1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	79	94	-	-0.423077	1.03e-05	0.294	CGACAGCTCACGATGC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	53	67	-	14.2979	1.03e-05	0.254	CTGGATGATGCCATA
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	19	33	+	14.2979	1.03e-05	0.254	AGGGATGAGGTCAGG
Hoxc9	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	26	38	-	13.9206	1.03e-05	1	ACCCATAAATTAC
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	2	16	+	13.3143	1.03e-05	0.0797	GGAGGGGAAGGGGCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	21	35	+	13.3143	1.03e-05	0.0797	GGAGGGGAAGGGGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	75	89	-	13.3143	1.03e-05	0.0797	GGAGGGGAAGGGGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	48	64	-	10.1091	1.03e-05	0.0107	GCGACTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	48	64	-	10.1091	1.03e-05	0.0107	GCGACTCCGCCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	48	64	-	10.1091	1.03e-05	0.0107	GCGACTCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	48	64	-	10.1091	1.03e-05	0.0107	GCGACTCCGCCCCCACC
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	+	14.0517	1.03e-05	0.0526	TCCCCTCCAGGCA
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	+	14.0517	1.03e-05	0.0526	ACCCCGGGGGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	-	14.0517	1.03e-05	0.0526	ACCCCGGGGGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	-	14.0517	1.03e-05	0.0526	TCCCCTCCAGGCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	23	42	+	9.53211	1.03e-05	0.0376	ACTCCACCCTCCCCCACCCC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	+	14.5957	1.03e-05	0.169	GGTGACTCACG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	+	14.5957	1.03e-05	0.169	GGTGACTCACG
JUND	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	-	14.5957	1.03e-05	0.169	GGTGACTCACG
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	20	33	+	12.9143	1.03e-05	0.0863	AGCTGACGTCACAG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	20	33	+	12.9143	1.03e-05	0.0863	AGCTGACGTCACAG
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	26	38	+	13.7805	1.03e-05	1	GAAGTGTGAAATG
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	75	87	-	13.7805	1.03e-05	1	GAAGTGTGAAATG
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	29	43	+	12.8361	1.03e-05	0.031	GGCCCCGCCCCCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	19	33	-	12.8361	1.03e-05	0.031	GGCCCCGCCCCCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	58	72	+	12.8361	1.03e-05	0.031	GGCCCCGCCCCCCGC
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	72	86	-	12.8361	1.03e-05	0.031	GGCCCCGCCCCCCGC
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	80	91	-	13.9672	1.03e-05	0.334	TTAGGCGCCACT
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	80	91	-	13.9672	1.03e-05	0.334	TTAGGCGCCACT
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	80	91	-	13.9672	1.03e-05	0.334	TTAGGCGCCACT
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	80	91	-	13.9672	1.03e-05	0.334	TTAGGCGCCACT
Gata1	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	31	41	+	14.102	1.03e-05	0.687	TTCTTATCTTC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	18	31	+	13.2241	1.03e-05	0.0173	CGTCCCGCCCCCCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	47	57	+	14.1061	1.03e-05	0.0388	GGCCACTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	66	76	+	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	89	99	+	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	16	26	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	27	37	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	27	37	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	27	37	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	27	37	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	31	41	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	31	41	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	31	41	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	39	49	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	51	61	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	51	61	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	51	61	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	51	61	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	51	61	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	58	68	-	14.1061	1.03e-05	0.0388	GGCCACTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	58	68	-	14.1061	1.03e-05	0.0388	GGCCACTCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	58	68	-	14.1061	1.03e-05	0.0388	GGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	58	68	-	14.1061	1.03e-05	0.0388	GGCCACTCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	58	68	-	14.1061	1.03e-05	0.0388	GGCCACTCCCT
RFX5	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	-	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
RFX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	+	11.4138	1.03e-05	0.0841	CGCTGCCATGGAGACA
E2F6	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	16	26	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	31	41	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	31	41	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	31	41	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	48	58	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	67	77	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	84	94	-	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	21	31	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	26	36	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	38	48	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	57	67	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	89	99	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
E2F6	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	90	100	+	14.4138	1.03e-05	0.027	GGGAGGGAGAC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	74	92	+	13.629	1.03e-05	0.137	GAAGTCAGTGACGCGAGGC
HNF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	14	28	-	13.4935	1.03e-05	0.291	AGTAAATGGTTAACC
HNF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	14	28	-	13.4935	1.03e-05	0.291	AGTAAATGGTTAACC
KLF5	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	12	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	22	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	22	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	22	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	22	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	25	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	25	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	18	27	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	18	27	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	14	23	-	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	16	25	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	16	25	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	21	30	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	21	30	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	22	31	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	38	47	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	29	38	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	31	40	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	31	40	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	34	43	-	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	36	45	-	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	36	45	-	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	40	49	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	49	58	-	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	60	69	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	75	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	58	67	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	58	67	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	58	67	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	58	67	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	80	+	14.3061	1.03e-05	0.00731	CCCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	67	76	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	86	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	72	81	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	72	81	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	93	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	85	94	+	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	88	97	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	103	112	-	14.3061	1.03e-05	0.00731	ACCCCGCCCC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	57	71	-	13.803	1.03e-05	0.0504	CCCTCGCGGGAGCAC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	57	71	-	13.803	1.03e-05	0.0504	CCCTCGCGGGAGCAC
Ascl2	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	-	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	-	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	+	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	+	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	71	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	+	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	74	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	91	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	91	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	92	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	+	14.3714	1.04e-05	0.14	AGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	85	94	-	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	85	94	-	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	85	94	-	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	85	94	-	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	107	+	14.3714	1.04e-05	0.14	AGCAGCTGCA
Ascl2	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	+	14.3714	1.04e-05	0.14	AGCAGCTGCG
POU1F1	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	10	23	-	13.6897	1.04e-05	0.835	AGTATGCAAAATAG
BATF::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	1	11	+	14.3846	1.04e-05	0.172	TATATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	1	11	+	14.3846	1.04e-05	0.172	TATATGAGTCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	49	69	-	13.0816	1.04e-05	0.00632	GAAGGCGGGGCCGGAGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	49	69	-	13.0816	1.04e-05	0.00632	GAAGGCGGGGCCGGAGAGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	28	48	+	13.0816	1.04e-05	0.00632	GAAGAACCGGGGGGCGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	29	49	+	13.0816	1.04e-05	0.00632	GAAGGCGGGGCCGGAGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	29	49	+	13.0816	1.04e-05	0.00632	GAAGGCGGGGCCGGAGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	46	66	+	13.0816	1.04e-05	0.00632	GAAGGCGGGGCCGGAGAGGAG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	4	23	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	4	23	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	6	25	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	6	25	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	45	64	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	47	66	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	49	68	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	51	70	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	53	72	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	55	74	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	57	76	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	59	78	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	61	80	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	63	82	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	65	84	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	67	86	+	9.51376	1.04e-05	0.0376	CACACACACACACACACACA
FOSL2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	12	-	14.6545	1.04e-05	0.112	AGATGACTCAC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	3	16	+	13.7692	1.04e-05	0.00782	CCTCCTCCTACTCC
EGR1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	21	34	-	13.7692	1.04e-05	0.00782	CTTCCGCCTCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	81	94	+	13.7692	1.04e-05	0.00782	CTTCCGCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	81	94	+	13.7692	1.04e-05	0.00782	CTTCCGCCTCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	100	113	-	13.7692	1.04e-05	0.00782	CCGCCTCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	100	113	-	13.7692	1.04e-05	0.00782	CCGCCTCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	100	113	-	13.7692	1.04e-05	0.00782	CCGCCTCCGCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	100	113	-	13.7692	1.04e-05	0.00782	CCGCCTCCGCCACC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	46	59	+	12.8857	1.04e-05	0.0863	CGATGGCGTCATCA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	46	59	+	12.8857	1.04e-05	0.0863	CGATGGCGTCATCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	11	25	+	13.8621	1.04e-05	0.00457	CCCCCTCCCCGGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	11	25	+	13.8621	1.04e-05	0.00457	CCCCCTCCCCGGCCC
SP2	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	34	48	+	13.8621	1.04e-05	0.00457	AGCCCGCCTCCCGCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	49	+	13.8621	1.04e-05	0.00457	GCCCCTCCCCAGACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	49	+	13.8621	1.04e-05	0.00457	GCCCCTCCCCAGACC
SP2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	29	43	-	13.8621	1.04e-05	0.00457	CGCCCGCCCCACGGC
SP2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	72	86	+	13.8621	1.04e-05	0.00457	CGCCCGCCCCACGGC
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	28	44	+	9.04918	1.04e-05	0.563	AGGTGATGCTGGGGTGA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.8936	1.04e-05	0.0373	ACCGGAAGCT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.8936	1.04e-05	0.0373	ACCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.8936	1.04e-05	0.0373	ACCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.8936	1.04e-05	0.0373	ACCGGAAGCT
ELK1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.8936	1.04e-05	0.0373	ACCGGAAGCT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.8936	1.04e-05	0.0373	ACCGGAAGCT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	97	111	+	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
MAFK	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	4	18	-	14.1333	1.04e-05	0.567	AATAATCAGCAAAAT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	43	+	13.7273	1.04e-05	0.0548	TGCCCCGGGGGA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	29	40	-	13.7273	1.04e-05	0.0548	TGCCCCGGGGGA
ELF1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	23	34	+	13.5455	1.04e-05	0.0673	GAGCCGGAAGTT
ELF1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	92	-	13.5455	1.04e-05	0.0673	GAGCCGGAAGTT
EGR3	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	38	52	-	11.7241	1.04e-05	0.0283	CCCCACCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	45	59	-	11.7241	1.04e-05	0.0283	CTCCGCCCACCCCCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	+	13.7273	1.04e-05	0.0893	TGCCCGAGGCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	+	13.7273	1.04e-05	0.0893	TGCCCGAGGCCA
KLF14	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	52	65	+	13.2069	1.04e-05	0.0173	GGACACACCCACCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	13	26	-	13.2069	1.04e-05	0.0173	TACCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	13	26	-	13.2069	1.04e-05	0.0173	TACCCCGCCCCCGC
KLF14	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	50	63	-	13.2069	1.04e-05	0.0173	GGACACACCCACCC
CUX2	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	61	70	-	13.6531	1.04e-05	1	TGATCGATAT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	52	68	-	10.0727	1.04e-05	0.0108	CGCGCCCCGCCCCTCGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	52	68	-	10.0727	1.04e-05	0.0108	CGCGCCCCGCCCCTCGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	52	68	-	10.0727	1.04e-05	0.0108	CGCGCCCCGCCCCTCGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	52	68	-	10.0727	1.04e-05	0.0108	CGCGCCCCGCCCCTCGT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	20	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	20	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	22	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	22	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	22	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	22	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	25	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	31	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	40	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	40	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	40	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	41	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	42	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	59	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	84	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	84	94	+	13.8966	1.04e-05	0.00942	GACCCCCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	94	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	95	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	100	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	107	+	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	8	18	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	8	18	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	11	21	-	13.8966	1.04e-05	0.00942	GACCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	11	21	-	13.8966	1.04e-05	0.00942	GACCCCCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	15	25	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	21	31	-	13.8966	1.04e-05	0.00942	GACCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	29	39	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	29	39	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	31	41	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	45	55	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	45	55	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	45	55	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	71	81	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	71	81	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	74	84	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	75	85	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	75	85	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	84	94	-	13.8966	1.04e-05	0.00942	GCCCCGCCTCC
ETV1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.4727	1.04e-05	0.0662	ACCGGAAGCT
ETV1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.4727	1.04e-05	0.0662	ACCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.4727	1.04e-05	0.0662	ACCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.4727	1.04e-05	0.0662	ACCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.4727	1.04e-05	0.0662	ACCGGAAGCT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.4727	1.04e-05	0.0662	ACCGGAAGCT
RREB1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	74	93	+	9.49541	1.04e-05	0.0376	CCCCCCCCCGCCCCCCCGCG
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	12	29	-	-0.621212	1.04e-05	1	GAGGCCAAGAGGGCAGGG
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	103	-	12.6212	1.05e-05	0.203	AGGGCCAAAGGTTG
Nr2f6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	59	+	12.6212	1.05e-05	0.203	AGGGCCAAAGGTTG
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	59	+	12.6212	1.05e-05	0.203	AGGGCCAAAGGTTG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	21	31	+	13.8	1.05e-05	0.00663	CCGCGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	69	79	+	13.8	1.05e-05	0.00663	CCGCGTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	84	94	-	13.8	1.05e-05	0.00663	CCGCGTGCGCC
ELF4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	23	34	+	13.3607	1.05e-05	0.058	GAGCCGGAAGTT
ELF4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	92	-	13.3607	1.05e-05	0.058	GAGCCGGAAGTT
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	14.3485	1.05e-05	0.171	GTCACGTGCT
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	14.3485	1.05e-05	0.171	GTCACGTGCT
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	58	+	13.8061	1.05e-05	0.219	GATCACGTGGC
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	96	114	-	13.5968	1.05e-05	0.671	TGCCTCCCGGTGGCCCCGG
ELF1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	26	37	+	13.5273	1.05e-05	0.0673	AACCCGGAAGAA
ELF1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	78	89	-	13.5273	1.05e-05	0.0673	AACCCGGAAGAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	75	88	-	10.6224	1.05e-05	0.365	TGGCAAGGTGGCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	75	88	-	10.6224	1.05e-05	0.365	TGGCAAGGTGGCAA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	33	43	-	13.7347	1.05e-05	0.155	AGTGACTCATG
SP1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	4	14	+	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	42	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	42	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	24	34	-	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	35	45	+	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	35	45	+	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	47	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	28	38	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	28	38	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	28	38	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	30	40	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	30	40	-	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	33	43	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	33	43	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	34	44	-	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	55	65	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	50	60	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	61	71	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	61	71	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	81	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	81	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	81	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	81	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	85	+	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	68	78	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	68	78	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	73	83	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	74	84	-	14.2115	1.05e-05	0.00515	GCCCCACCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	101	111	-	14.2115	1.05e-05	0.00515	TCTCCGCCCCT
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	4	17	+	9.78788	1.05e-05	0.379	CGCCCCCCACCATG
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	57	70	-	9.78788	1.05e-05	0.379	CGCCCCCCACCATG
SP4	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	31	47	-	10.0545	1.05e-05	0.0108	CTTGCCACACCCACCCT
SP4	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	68	84	+	10.0545	1.05e-05	0.0108	CTTGCCACACCCACCCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	-	14.0345	1.05e-05	0.0526	CCCCCCCGGGGCC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	-	14.0345	1.05e-05	0.0526	TCCCCGCCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	+	14.0345	1.05e-05	0.0526	TCCCCGCCGGGCG
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	17	30	-	7.84848	1.05e-05	0.105	CTCTGACGTCAGCG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	71	85	+	12.5429	1.05e-05	0.0947	CCCCTCCCCCTGCGC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	79	94	+	9.45455	1.05e-05	0.186	CAGTGCAAAGTGCATC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	79	94	+	9.45455	1.05e-05	0.186	CAGTGCAAAGTGCATC
EGR1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	6	19	-	13.75	1.05e-05	0.00785	GCTCCGCCCTCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	35	48	+	13.75	1.05e-05	0.00785	TGCCCGCCCACGTC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	35	48	-	13.75	1.05e-05	0.00785	CCTCCGCCCACAGG
EGR1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	43	56	-	13.75	1.05e-05	0.00785	TGCCCGCCCACGTC
EGR1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	59	72	+	13.75	1.05e-05	0.00785	TGCCCGCCCACGTC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	86	+	13.75	1.05e-05	0.00785	CCTCCGCCCACAGG
EGR1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	67	80	-	13.75	1.05e-05	0.00785	TGCCCGCCCACGTC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	96	109	+	13.75	1.05e-05	0.00785	GCTCCGCCCTCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	33	47	+	13.8448	1.05e-05	0.00461	CCTCCGCCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	31	45	-	13.8448	1.05e-05	0.00461	CCTCCGCCCCGGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	31	45	-	13.8448	1.05e-05	0.00461	CCTCCGCCCCGGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	75	89	+	13.8448	1.05e-05	0.00461	CCTCCGCCCCGGCCC
TCF4	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	15	24	+	13.9388	1.05e-05	0.317	CACACCTGGG
TCF4	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	91	100	-	13.9388	1.05e-05	0.317	CACACCTGGG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	63	76	+	13.8226	1.05e-05	0.232	CTTCCTGGAGGGTC
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	63	76	+	13.8226	1.05e-05	0.232	CTTCCTGGAGGGTC
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	2	12	+	14.0862	1.05e-05	0.555	AGCTGTTTACT
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	2	12	+	14.0862	1.05e-05	0.555	AGCTGTTTACT
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	2	12	+	14.0862	1.05e-05	0.555	AGCTGTTTACT
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	2	12	+	14.0862	1.05e-05	0.555	AGCTGTTTACT
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	14	28	+	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	14	28	+	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	14	28	+	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	14	28	+	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	49	63	-	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	49	63	-	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	49	63	-	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	49	63	-	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	49	63	-	13.4675	1.05e-05	0.291	TGTAAATGTTTAACT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	10	27	+	-5.26316	1.05e-05	0.0214	GGAAGGGGTGGGGGATGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	10	27	+	-5.26316	1.05e-05	0.0214	GGAAGGGGTGGGGGATGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	10	27	+	-5.26316	1.05e-05	0.0214	GGAAGGGGTGGGGGATGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	37	51	+	12.7869	1.05e-05	0.031	GACCCCGCCCCCCAG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	27	41	-	12.7869	1.05e-05	0.031	GACCCCGCCCCCCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	27	41	-	12.7869	1.05e-05	0.031	GACCCCGCCCCCCAG
TEF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	-	14.2545	1.05e-05	1	AATTACGTAATG
GLIS2	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	23	36	+	12.6721	1.05e-05	0.176	GACCCCCCACCCCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	54	67	-	10.949	1.05e-05	0.0605	GCGGCCTAAGGGGA
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	36	50	+	11.6897	1.05e-05	0.0283	GCCCGCCCCCACGTT
Hoxd9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	44	+	12.5694	1.06e-05	1	GTAATTAAAA
Hoxd9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	44	+	12.5694	1.06e-05	1	GTAATTAAAA
Arntl	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	55	-	13.9508	1.06e-05	0.107	CGTCACGTGG
Rfx1	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	62	75	+	13.569	1.06e-05	0.0897	GCCACCCAGGCAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	40	53	-	13.569	1.06e-05	0.0897	GCCACCCAGGCAAC
JUNB	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	27	37	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	63	73	+	14.5918	1.06e-05	0.113	CAGTGACTCAT
JUNB	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	67	77	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	83	93	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	83	93	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	83	93	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	83	93	+	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	44	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	44	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	44	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	44	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	34	44	-	14.5918	1.06e-05	0.113	CAGTGACTCAT
JUNB	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	48	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	88	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	81	91	-	14.5918	1.06e-05	0.113	GGATGAGTCAC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	60	73	-	14.1364	1.06e-05	0.022	GATGCCTGGGCCTG
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	43	-	14.2553	1.06e-05	0.254	TGCGGTGACGTCACC
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	23	37	+	14.2553	1.06e-05	0.254	GGCAATGATGTCACT
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	23	37	+	14.2553	1.06e-05	0.254	GGCAATGATGTCACT
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	23	37	+	14.2553	1.06e-05	0.254	GGCAATGATGTCACT
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	23	37	+	14.2553	1.06e-05	0.254	GGCAATGATGTCACT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	23	37	+	14.2553	1.06e-05	0.254	GGCAATGATGTCACT
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	72	86	+	14.2553	1.06e-05	0.254	TGCGGTGACGTCACC
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	38	54	-	9	1.06e-05	0.563	AGGTCAAAGGAAGGGGA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	+	13.7091	1.06e-05	0.0548	TCCCCGCGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	-	13.7091	1.06e-05	0.0548	TCCCCGCGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	-	13.7091	1.06e-05	0.0548	TCCCCGCGGGCT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	9	18	+	13.9541	1.06e-05	0.0248	CCCCCCCCCA
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	9	18	+	13.9541	1.06e-05	0.0248	CCCCCCCCCA
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	11	20	+	13.9541	1.06e-05	0.0248	CCCCCCCCCA
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	9	18	-	13.9541	1.06e-05	0.0248	CCCCCCCCCA
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	9	18	-	13.9541	1.06e-05	0.0248	CCCCCCCCCA
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	27	36	-	13.9541	1.06e-05	0.0248	CCCCCCCCCA
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	13.871	1.06e-05	1	AACATATGCC
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	13.871	1.06e-05	1	AACATATGCC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	25	35	+	14.3621	1.06e-05	0.0272	GCGCGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	25	35	+	14.3621	1.06e-05	0.0272	GCGCGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	73	83	+	14.3621	1.06e-05	0.0272	GCGCGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	73	83	+	14.3621	1.06e-05	0.0272	GCGCGGGAGAG
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	-	14.7091	1.06e-05	0.105	TGTGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	-	14.7091	1.06e-05	0.105	TGTGAGTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	-	14.7091	1.06e-05	0.105	TGTGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	-	14.7091	1.06e-05	0.105	TGTGAGTCATC
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	23	32	+	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	22	31	-	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	22	31	-	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	22	31	-	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	22	31	-	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	28	37	-	12.2439	1.06e-05	0.317	CCAATCACCG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	35	44	-	12.2439	1.06e-05	0.317	CCAATCACCG
ELF4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	85	96	+	13.3443	1.06e-05	0.0583	ATCCCGGAAGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	28	38	+	14.1311	1.06e-05	0.0292	CCGGAAGTTAC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	28	38	+	14.1311	1.06e-05	0.0292	CCGGAAGTTAC
SP1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	3	13	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	38	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	38	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	52	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	34	44	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	34	44	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	60	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	65	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	65	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	50	60	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	50	60	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	55	65	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	77	87	-	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	112	+	14.1923	1.06e-05	0.00516	GCTCCGCCCAC
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	29	-	13.7692	1.06e-05	0.265	AGGGTTCAAAGCTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	37	-	13.7692	1.06e-05	0.265	TTGGGGCAGAGGCCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	37	-	13.7692	1.06e-05	0.265	TTGGGGCAGAGGCCA
HNF4G	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	86	100	+	13.7692	1.06e-05	0.265	AGGGTTCAAAGCTCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	93	107	+	13.7692	1.06e-05	0.265	TTGGGGCAGAGGCCA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	61	74	-	13.662	1.06e-05	0.127	GTAATGCGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	61	74	-	13.662	1.06e-05	0.127	GTAATGCGGAAGAA
ETV4	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	13.5172	1.06e-05	0.0731	ACCGGAAATG
ETV4	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	13.5172	1.06e-05	0.0731	ACCGGAAATG
ETV4	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	13.5172	1.06e-05	0.0731	ACCGGAAATG
ETV4	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	13.5172	1.06e-05	0.0731	ACCGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.9231	1.06e-05	0.0818	TCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.9231	1.06e-05	0.0818	TCCGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.9231	1.06e-05	0.0818	TCCGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.9231	1.06e-05	0.0818	TCCGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
ERF	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	13.9714	1.06e-05	0.0584	ACAGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.9231	1.06e-05	0.0818	TCCGGAAGTG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	54	64	+	14.2449	1.06e-05	0.16	ATTCTGGGAAA
SP2	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	2	16	-	13.8276	1.06e-05	0.00463	TGCCCGCCCCACCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	24	38	+	13.8276	1.06e-05	0.00463	AGCCCGCCCCGCCGC
SP2	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	24	38	+	13.8276	1.06e-05	0.00463	CCCCCTCCCCGCCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	24	38	+	13.8276	1.06e-05	0.00463	AGCCCGCCCCGCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	24	38	+	13.8276	1.06e-05	0.00463	AGCCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	24	38	+	13.8276	1.06e-05	0.00463	AGCCCGCCCCGCCGC
SP2	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	40	54	-	13.8276	1.06e-05	0.00463	GCCCCTCCCAGCCCC
SP2	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	75	+	13.8276	1.06e-05	0.00463	GCCCCTCCCAGCCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	77	91	-	13.8276	1.06e-05	0.00463	CCCCCTCCCCGCCCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	32	42	-	14.5172	1.06e-05	0.0324	GCGCGGGAGAC
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	30	50	-	13.0408	1.06e-05	0.00646	CGGGGAGGGAGCGCGGAGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	65	85	+	13.0408	1.06e-05	0.00646	CGGGGAGGGAGCGCGGAGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	14	32	-	12.6721	1.06e-05	0.0647	CGGCCGCCAGAGTGAGCCA
Klf12	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	32	46	-	12.7705	1.06e-05	0.031	GGCCACGCTCCTCCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	87	101	+	12.7705	1.06e-05	0.031	GATCACGCCCTTGAT
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	87	101	+	12.7705	1.06e-05	0.031	GATCACGCCCTTGAT
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	-	12.9423	1.06e-05	0.574	AACAAGTGGCGGCTTGCA
TP73	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	-	12.9423	1.06e-05	0.574	AACAAGTGGCGGCTTGCA
TP73	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	-	12.9423	1.06e-05	0.574	AACAAGTGGCGGCTTGCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	23	39	-	10.0182	1.06e-05	0.0109	TAGGCCCCACCCCTCCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	23	39	-	10.0182	1.06e-05	0.0109	TAGGCCCCACCCCTCCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	23	39	-	10.0182	1.06e-05	0.0109	TAGGCCCCACCCCTCCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	23	39	-	10.0182	1.06e-05	0.0109	TAGGCCCCACCCCTCCA
GLIS2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	27	40	-	12.6557	1.06e-05	0.176	GCCCCCCCGCCGCC
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	45	60	+	9.41818	1.06e-05	0.186	GGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	45	60	+	9.41818	1.06e-05	0.186	GGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	80	95	+	9.41818	1.06e-05	0.186	GGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	80	95	+	9.41818	1.06e-05	0.186	GGGAGCAGAGTCCGGC
MNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	34	43	+	11.4627	1.06e-05	1	TGTAATTAAA
MNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	34	43	+	11.4627	1.06e-05	1	TGTAATTAAA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	23	36	-	14.3077	1.06e-05	0.134	AGCGAGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	47	-	14.3077	1.06e-05	0.134	CAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	47	-	14.3077	1.06e-05	0.134	CAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	80	93	+	14.3077	1.06e-05	0.134	CAAGGATGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	80	93	+	14.3077	1.06e-05	0.134	CAAGGATGAGTCAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	13.1429	1.06e-05	0.0731	CGCACGTGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	13.1429	1.06e-05	0.0731	CGCACGTGAC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	1	14	-	13.7308	1.06e-05	0.00792	GCTCTTCCCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	90	103	+	13.7308	1.06e-05	0.00792	CCTCCGCCTCCAGC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	86	99	-	13.7308	1.06e-05	0.00792	CCACCGCCTCCTCT
EGR1	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	101	114	+	13.7308	1.06e-05	0.00792	GCTCTTCCCCCGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	-	13.5612	1.06e-05	0.0857	CGCCTCCGGGCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	23	+	13.7105	1.06e-05	0.0152	GCCACGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	23	+	13.7105	1.06e-05	0.0152	GCCACGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	12	23	+	13.7105	1.06e-05	0.0152	GCCACGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	27	38	+	13.7105	1.06e-05	0.0152	GCCACGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	38	+	13.7105	1.06e-05	0.0152	GCCACGCCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	50	60	-	13.4472	1.06e-05	0.00936	GCCACTCCCCT
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	-	13.7455	1.06e-05	0.0397	CGCCTGCGGCT
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	+	11.1119	1.06e-05	0.0721	AGCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	+	11.1119	1.06e-05	0.0721	AGCACGCGCC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	58	72	+	13.4394	1.06e-05	0.169	TACTGTGACTCAGGA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	82	96	-	13.4394	1.06e-05	0.169	TACTGTGACTCAGGA
HEY2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	14.1379	1.06e-05	0.16	GTCACGTGTC
HEY2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	14.1379	1.06e-05	0.16	GTCACGTGTC
HEY2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	14.1379	1.06e-05	0.16	GTCACGTGTC
HEY2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	14.1379	1.06e-05	0.16	GTCACGTGTC
HEY2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	14.1379	1.06e-05	0.16	GTCACGTGTC
HEY2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	14.1379	1.06e-05	0.16	GTCACGTGTC
SRF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	1	16	+	10.7049	1.06e-05	0.332	TTCCCATAAAAGGGCT
SRF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	1	16	+	10.7049	1.06e-05	0.332	TTCCCATAAAAGGGCT
E2F3	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	60	77	-	9.89091	1.06e-05	1	AAAAAGGGCGCCTACAGC
KLF16	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	19	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	26	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	26	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	28	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	35	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	35	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	38	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	81	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	99	109	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	110	+	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	5	15	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	5	15	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	6	16	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	13	23	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	20	30	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	20	30	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	22	32	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	24	34	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	24	34	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	24	34	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	31	41	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	34	44	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	34	44	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	34	44	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	34	44	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	87	97	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	96	106	-	13.8621	1.06e-05	0.00942	GGCCCGCCCCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	46	-	14.1455	1.07e-05	0.0328	ACACTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	56	66	+	14.1455	1.07e-05	0.0328	GGGCTTCCGGT
ELK4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	59	-	14.1455	1.07e-05	0.0328	GGGCTTCCGGT
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	49	63	+	13.4414	1.07e-05	0.138	GGGGGTCAGAAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	+	13.9615	1.07e-05	0.0588	CGCCTCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	+	13.9615	1.07e-05	0.0588	CGCCTCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	-	13.9615	1.07e-05	0.0588	GGCCTGAGGCT
KLF14	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	8	21	+	13.1552	1.07e-05	0.0173	AGGCCCGCCCCCTC
KLF14	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	99	112	+	13.1552	1.07e-05	0.0173	AGGCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	3	16	-	13.1552	1.07e-05	0.0173	AGGCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	3	16	-	13.1552	1.07e-05	0.0173	AGGCCCGCCCCCTC
KLF14	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	94	107	-	13.1552	1.07e-05	0.0173	AGGCCCGCCCCCTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	14.1915	1.07e-05	0.0685	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	2	11	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	2	11	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	15	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	15	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	15	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	15	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	15	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	25	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	27	36	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	28	37	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	35	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	35	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	35	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	35	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	35	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	40	49	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	50	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	50	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	52	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	63	72	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	63	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	63	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	63	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	63	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	63	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	65	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	65	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	65	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	65	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	66	75	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	75	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	75	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	75	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	75	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	75	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	80	89	+	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	87	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	87	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	88	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	88	-	13.9091	1.07e-05	0.0754	GCCGGAAGTG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	10	22	+	13.197	1.07e-05	0.196	CGGGGAGTCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	10	22	+	13.197	1.07e-05	0.196	CGGGGAGTCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	10	22	+	13.197	1.07e-05	0.196	CGGGGAGTCCCCG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	10	22	+	13.197	1.07e-05	0.196	CGGGGAGTCCCCG
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	1	15	-	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	1	15	-	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	1	15	-	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	1	15	-	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.0	63	77	+	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.1	63	77	+	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	63	77	+	14.1224	1.07e-05	0.511	CTCGTGTTTGCATAG
USF1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	13	23	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	26	36	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	34	44	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	44	54	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	44	54	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	47	57	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	47	57	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	47	57	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	47	57	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	47	57	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	63	73	-	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	52	+	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	55	+	14.0816	1.07e-05	0.074	ACCACGTGACG
USF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	59	+	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	71	+	14.0816	1.07e-05	0.074	GTCACGTGGCC
USF1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	89	+	14.0816	1.07e-05	0.074	GTCACGTGGCC
EGR2	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	78	88	+	13.4138	1.07e-05	0.0586	CCGCACACGCA
EGR2	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	101	111	+	13.4138	1.07e-05	0.0586	CCGCACACGCA
EGR2	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	4	14	-	13.4138	1.07e-05	0.0586	CCGCACACGCA
EGR2	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	27	37	-	13.4138	1.07e-05	0.0586	CCGCACACGCA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	8	21	-	14.1212	1.07e-05	0.022	GCCGCCTTGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	8	21	-	14.1212	1.07e-05	0.022	GCCGCCTTGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	8	21	-	14.1212	1.07e-05	0.022	GCCGCCTTGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	8	21	-	14.1212	1.07e-05	0.022	GCCGCCTTGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	11	24	-	14.1212	1.07e-05	0.022	GGGGGCGTGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	11	24	-	14.1212	1.07e-05	0.022	GGGGGCGTGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	11	24	-	14.1212	1.07e-05	0.022	GGGGGCGTGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	11	24	-	14.1212	1.07e-05	0.022	GGGGGCGTGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	34	47	-	14.1212	1.07e-05	0.022	CCTGGCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	34	47	-	14.1212	1.07e-05	0.022	CCTGGCCGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	69	82	-	14.1212	1.07e-05	0.022	CCTGGCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	69	82	-	14.1212	1.07e-05	0.022	CCTGGCCGGGCCTC
ETV2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	66	76	+	14.2623	1.07e-05	0.118	AACCGGAAAGA
ETV2	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	26	-	14.2623	1.07e-05	0.118	AACCGGAAGCT
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	49	-	14.2623	1.07e-05	0.118	AACCGGAAAGA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	49	-	14.2623	1.07e-05	0.118	AACCGGAAAGA
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	49	-	14.2623	1.07e-05	0.118	AACCGGAAAGA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	49	-	14.2623	1.07e-05	0.118	AACCGGAAAGA
ETV2	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	64	-	14.2623	1.07e-05	0.118	AACCGGAAGCT
Stat6	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	51	65	-	14.2931	1.07e-05	0.392	CCATTCCTGAGAATC
BATF3	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	41	54	+	7.78788	1.07e-05	0.105	GTTTGACGTCATCA
BATF3	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	61	74	-	7.78788	1.07e-05	0.105	GTTTGACGTCATCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	+	14.082	1.07e-05	0.0626	TGCCTTGCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	+	14.082	1.07e-05	0.0626	TGCCTTGCAGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	-	14.082	1.07e-05	0.0626	TGCCTTGCAGGCA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	48	64	+	10	1.07e-05	0.0109	CGCGCCCCGCCCCTCGC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	51	67	-	10	1.07e-05	0.0109	CGCGCCCCGCCCCTCGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	49	63	-	11.6552	1.07e-05	0.0283	CTCCACCCACGCCTG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	45	62	-	13.2317	1.07e-05	0.061	CGCGGCCTGATTGGCTGC
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	45	62	-	13.2317	1.07e-05	0.061	CGCGGCCTGATTGGCTGC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	45	62	-	13.2317	1.07e-05	0.061	CGCGGCCTGATTGGCTGC
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	45	62	-	13.2317	1.07e-05	0.061	CGCGGCCTGATTGGCTGC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	29	43	-	12.7541	1.07e-05	0.031	GGCCCCGCCCCAGTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	29	43	-	12.7541	1.07e-05	0.031	GGCCCCGCCCCAGTC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	51	63	-	14.3061	1.07e-05	0.107	CGCAGCTGCTTTC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	32	50	-	13.5645	1.07e-05	0.671	TGCCCCGGAGTGGACCGCC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	32	50	-	13.5645	1.07e-05	0.671	TGCCCCGGAGTGGACCGCC
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	32	50	-	13.5645	1.07e-05	0.671	TGCCCCGGAGTGGACCGCC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	66	78	-	8.79592	1.07e-05	0.233	GGGGGGGTCCCCG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	66	78	-	8.79592	1.07e-05	0.233	GGGGGGGTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	66	78	-	8.79592	1.07e-05	0.233	GGGGGGGTCCCCG
EHF	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	5	16	+	13.7377	1.07e-05	0.0902	GACCAGGAAGTT
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	25	35	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	25	35	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	25	35	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	25	35	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	37	47	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	37	47	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	37	47	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	57	67	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	57	67	+	13.7636	1.07e-05	0.00672	GCACATGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	48	58	-	13.7636	1.07e-05	0.00672	GCACATGCGCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	27	42	+	13.4545	1.07e-05	0.031	CCACGCCCCCGCCGGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	27	42	+	13.4545	1.07e-05	0.031	CCACGCCCCCGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	27	42	+	13.4545	1.07e-05	0.031	CCACGCCCCCGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	27	42	+	13.4545	1.07e-05	0.031	CCACGCCCCCGCCGGC
REL	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	11	20	-	13.4444	1.07e-05	0.187	CGGGAATTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	62	71	-	13.4444	1.07e-05	0.187	CGGGAATTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	62	71	-	13.4444	1.07e-05	0.187	CGGGAATTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	101	110	-	13.4444	1.07e-05	0.187	CGGGAATTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	101	110	-	13.4444	1.07e-05	0.187	CGGGAATTCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	1	20	-	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	1	20	-	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	1	20	-	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	1	20	-	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	9	28	-	9.42202	1.07e-05	0.0376	TCACCAACCAATCCCACCCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	26	45	+	9.42202	1.07e-05	0.0376	GACCCACCCACCCGATCCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	52	71	+	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	52	71	+	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	52	71	+	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	52	71	+	9.42202	1.07e-05	0.0376	ACCCAGCTCACCCAATCAGA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	11	24	-	10.9082	1.07e-05	0.0605	GAGGCCAACGCGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	91	104	+	10.9082	1.07e-05	0.0605	GAGGCCAACGCGGG
SP2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	5	19	-	13.8103	1.07e-05	0.00467	CCTCCTCCCCCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	6	20	-	13.8103	1.07e-05	0.00467	CCTCCTCCCCCCTCC
SP2	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	39	53	-	13.8103	1.07e-05	0.00467	TTCCCTCCTCCCGGC
SP2	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	62	76	+	13.8103	1.07e-05	0.00467	TTCCCTCCTCCCGGC
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	29	-	2.77143	1.07e-05	0.649	AGGGTTCAAAGCTCA
Nr2f6(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	86	100	+	2.77143	1.07e-05	0.649	AGGGTTCAAAGCTCA
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	4	24	-	13.0806	1.07e-05	0.12	TGTCACTTTCTCTTTATTTCC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	4	24	-	13.0806	1.07e-05	0.12	TGTCACTTTCTCTTTATTTCC
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	41	55	+	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	41	55	+	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	41	55	+	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	41	55	+	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	41	55	+	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
NR2C2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	60	74	-	13.2286	1.07e-05	0.0797	GGCGGGCGAAGGTCA
TBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	48	62	+	12.9722	1.07e-05	0.272	GTATAAAAGCTGGCC
TBP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	48	62	+	12.9722	1.07e-05	0.272	GTATAAAAGCTGGCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	22	38	+	2.6	1.07e-05	0.896	GAGGTCATCGGTGGTCG
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	22	38	+	2.6	1.07e-05	0.896	GAGGTCATCGGTGGTCG
Rarg(var.2)	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	77	93	-	2.6	1.07e-05	0.896	GAGGTCATCGGTGGTCG
Mitf	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	34	43	-	12.3163	1.07e-05	0.102	AGTCACGTGA
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	57	+	14.1731	1.07e-05	0.00522	ACCCCTCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	50	60	-	14.1731	1.07e-05	0.00522	ACCCCTCCCCT
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	34	50	+	13.3878	1.07e-05	0.338	GGGTGACCCGGGGTGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	34	50	+	13.3878	1.07e-05	0.338	GGGTGACCCGGGGTGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	34	50	+	13.3878	1.07e-05	0.338	GGGTGACCCGGGGTGCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	15	28	-	13.7115	1.07e-05	0.00798	CGCCTTCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:173793436..173793550,-__959.1.0.0	37	50	-	13.7115	1.07e-05	0.00798	GGCCCTCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	65	78	-	13.7115	1.07e-05	0.00798	CCTCCGCTCCCTCA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	83	103	-	13.0204	1.07e-05	0.00654	GGGAGAGGGGGAAAAAAAGGC
SP4	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	6	22	-	9.98182	1.08e-05	0.011	GGCGCCCCGCCCCCGAC
SP4	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	93	109	+	9.98182	1.08e-05	0.011	GGCGCCCCGCCCCCGAC
PLAG1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	13	26	+	10.898	1.08e-05	0.0605	GGGGGCCTGGCGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	16	29	-	10.898	1.08e-05	0.0605	GGGGGTCCCGGGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	89	102	-	10.898	1.08e-05	0.0605	GGGGGCCTGGCGGG
Creb5	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	44	+	13.6545	1.08e-05	0.0992	TCTGACGTCATT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	58	75	-	-5.31579	1.08e-05	0.0217	GGAGGAAAGGAGGGGAGC
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	1	14	+	12.5606	1.08e-05	0.203	GGGGTCAGGGGTGA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	1	14	+	12.5606	1.08e-05	0.203	GGGGTCAGGGGTGA
EGR3	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	19	33	-	11.6379	1.08e-05	0.0283	CCTCGCCCCCGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	90	104	-	11.6379	1.08e-05	0.0283	CCTCGCCCCCGCCCC
EGR3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	11	25	+	11.6379	1.08e-05	0.0283	CCTCGCCCCCGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	82	96	+	11.6379	1.08e-05	0.0283	CCTCGCCCCCGCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	22	32	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	22	32	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	22	32	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	22	32	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	26	36	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	26	36	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	26	36	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	26	36	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	55	65	-	13.8448	1.08e-05	0.00942	GCCCCACCCCT
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	+	14.5319	1.08e-05	0.169	GCTGAGTCATC
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	+	14.5319	1.08e-05	0.169	GCTGAGTCATC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	73	85	+	12.8621	1.08e-05	0.108	GATCCGGAAGTGG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	34	47	-	11.4681	1.08e-05	0.0959	CCCCACCCGCTGCT
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	16	26	+	14.0364	1.08e-05	0.197	ACCCGGAAGTT
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	+	11.234	1.08e-05	0.704	GTGGACAGCGTGTACCG
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	+	11.234	1.08e-05	0.704	GTGGACAGCGTGTACCG
Zfx	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	11	24	-	14.1061	1.08e-05	0.022	ACAGCTGCGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	52	65	+	14.1061	1.08e-05	0.022	GGATGCCAGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	50	63	-	14.1061	1.08e-05	0.022	GGATGCCAGGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	91	104	+	14.1061	1.08e-05	0.022	ACAGCTGCGGCCTG
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	60	74	+	12.7377	1.08e-05	0.031	GGCCCCGCCCTGGAA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	60	74	+	12.7377	1.08e-05	0.031	GGCCCCGCCCTGGAA
TFAP4	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	-	14.1636	1.08e-05	0.606	CACAGCTGTT
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	-	14.1636	1.08e-05	0.606	CACAGCTGTT
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	-	14.1636	1.08e-05	0.606	CACAGCTGTT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	-	13.551	1.08e-05	0.0857	CGCCTCAGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	+	13.551	1.08e-05	0.0857	CGCCTCAGGGCT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	+	14.6727	1.08e-05	0.105	GGTGACTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	+	14.6727	1.08e-05	0.105	GGTGACTCACA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	+	14.6727	1.08e-05	0.105	GGTGACTCACA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	-	14.6727	1.08e-05	0.105	GGTGACTCACA
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	33	51	-	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	33	51	-	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	33	51	-	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	33	51	-	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	33	51	-	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
CTCF	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	64	82	+	12.6393	1.08e-05	0.0647	CTCCCACAGGGGGGCGGGG
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	70	83	+	9.32727	1.08e-05	0.123	AGAATCAGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	70	83	+	9.32727	1.08e-05	0.123	AGAATCAGGAAGTC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	-	13.6909	1.08e-05	0.0548	TCCCTCCGGGCG
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	61	+	5.2449	1.08e-05	0.877	AGGGCCAAAGGTTGAA
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	61	+	5.2449	1.08e-05	0.877	AGGGCCAAAGGTTGAA
Rarg	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	88	103	-	5.2449	1.08e-05	0.877	AGGGCCAAAGGTTGAA
Tcf12	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	72	+	14.3878	1.08e-05	0.104	AGCAGCTGCAC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	92	+	14.3878	1.08e-05	0.104	AGCAGCTGCAC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	92	+	14.3878	1.08e-05	0.104	AGCAGCTGCAC
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	62	76	+	11.6207	1.08e-05	0.0283	CTCCGCCCACCCCCA
Znf423	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	55	69	+	9.86517	1.08e-05	0.163	GCCCCCCTGGGGGCG
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	60	-	9.86517	1.08e-05	0.163	GCCCCCCTGGGGGCG
Znf423	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	60	-	9.86517	1.08e-05	0.163	GCCCCCCTGGGGGCG
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	60	-	9.86517	1.08e-05	0.163	GCCCCCCTGGGGGCG
HMBOX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	15	24	-	12.9032	1.08e-05	1	CCTAGTTACG
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	15	24	-	12.9032	1.08e-05	1	CCTAGTTACG
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	15	24	-	12.9032	1.08e-05	1	CCTAGTTACG
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	15	24	-	12.9032	1.08e-05	1	CCTAGTTACG
HMBOX1	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	91	100	+	12.9032	1.08e-05	1	CCTAGTTACG
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	14.0172	1.08e-05	1	AACATATGCT
OLIG3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	14.0172	1.08e-05	1	AACATATGCT
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	14.0172	1.08e-05	1	AACATATGCT
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	22	39	+	13.2073	1.08e-05	0.061	CGCGCCCCCATTGGCTCA
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	22	39	+	13.2073	1.08e-05	0.061	CGCGCCCCCATTGGCTCA
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	55	72	-	13.2073	1.08e-05	0.061	CGCGCCCCCATTGGCTCA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	55	72	-	13.2073	1.08e-05	0.061	CGCGCCCCCATTGGCTCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	67	81	+	13.7273	1.08e-05	0.0524	CGCTCGCGGGACCAG
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	38	49	-	13.7213	1.08e-05	0.0902	AACCGGGAAGTA
EHF	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	66	77	+	13.7213	1.08e-05	0.0902	AACCGGGAAGTA
Klf1	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	35	45	+	14.0455	1.08e-05	0.0388	TCCCACACCCA
ELF3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	25	37	-	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	71	83	-	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	32	44	+	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	32	44	+	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	32	44	+	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	32	44	+	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
ELF3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	78	90	+	12.8448	1.08e-05	0.108	GCCCCGGAAGTGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	85	95	-	14.3448	1.08e-05	0.0272	AGGCGGGAGCC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	85	95	-	14.3448	1.08e-05	0.0272	AGGCGGGAGCC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	85	95	-	14.3448	1.08e-05	0.0272	AGGCGGGAGCC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	85	95	-	14.3448	1.08e-05	0.0272	AGGCGGGAGCC
E2F6	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	11	21	+	14.3448	1.08e-05	0.0272	AGGCGGGAGCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	37	47	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	37	47	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	37	47	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	37	47	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	66	76	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	66	76	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	66	76	+	13.439	1.08e-05	0.00936	CACCCGCCCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	15	30	+	13.4364	1.08e-05	0.031	CAGCGCCCACGCGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	85	100	-	13.4364	1.08e-05	0.031	CAGCGCCCACGCGCCT
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	86	-	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	86	-	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	46	+	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	47	+	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	47	+	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	58	+	14.0612	1.08e-05	0.074	GTCACGTGACG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	58	+	14.0612	1.08e-05	0.074	GTCACGTGACG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	19	29	+	14.4828	1.08e-05	0.0326	GCGCGGGAACC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	86	96	-	14.4828	1.08e-05	0.0326	GCGCGGGAACC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	86	96	-	14.4828	1.08e-05	0.0326	GCGCGGGAACC
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	35	48	+	10.5816	1.08e-05	0.365	TGGCGGCCAGCCAA
NFIC::TLX1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	67	80	-	10.5816	1.08e-05	0.365	TGGCGGCCAGCCAA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	4	13	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	4	13	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	5	14	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	23	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	5	14	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	8	17	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	10	19	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	20	29	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	29	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	11	20	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	29	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	34	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	17	26	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	19	28	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	28	37	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	52	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	44	53	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	45	54	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	45	54	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	63	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	63	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	63	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	48	57	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	49	58	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	49	58	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	52	61	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	54	63	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	65	74	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	65	74	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	76	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	76	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	78	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	78	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	62	71	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	62	71	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	63	72	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	91	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	95	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	78	87	-	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	106	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	106	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	107	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	102	111	+	14.2653	1.08e-05	0.0074	TCCCCTCCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	30	41	+	14.0455	1.08e-05	0.101	CTCCGTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	30	41	+	14.0455	1.08e-05	0.101	CTCCGTCCGCGG
USF2	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	33	43	-	14.2041	1.08e-05	0.0606	ATCATGTGACA
USF2	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	49	59	-	14.2041	1.08e-05	0.0606	ATCATGTGACA
USF2	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	65	75	-	14.2041	1.08e-05	0.0606	ACCATGTGGCC
USF2	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	40	50	+	14.2041	1.08e-05	0.0606	ACCATGTGGCC
USF2	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	66	+	14.2041	1.08e-05	0.0606	ATCATGTGACA
RXRG	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	17	-	8.2766	1.08e-05	0.277	GGTGTCAGAGGTTA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	10	19	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	20	29	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	31	40	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	32	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	32	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	32	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	32	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	32	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	38	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	38	47	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	38	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	29	38	-	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	38	47	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	38	47	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	38	47	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	39	48	+	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	34	43	-	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	52	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	52	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	53	62	-	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	62	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	64	73	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	64	73	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	69	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	69	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	69	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	69	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	70	79	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	70	79	+	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	72	81	+	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	67	76	-	14.1531	1.09e-05	0.00928	AGGGCGTGGT
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	77	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	78	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	84	-	14.1531	1.09e-05	0.00928	GGGGTGGGGT
Klf4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	97	106	+	14.1531	1.09e-05	0.00928	AGGGCGTGGT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	6	19	+	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	34	47	+	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	34	47	+	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	46	59	+	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	76	89	+	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	26	39	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	26	39	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	30	43	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	30	43	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	30	43	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	30	43	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
KLF14	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	56	69	-	13.1207	1.09e-05	0.0173	CGCCCCGCCCCCAG
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	41	-	13.6	1.09e-05	0.0992	AGTGACGTCACG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	41	-	13.6	1.09e-05	0.0992	AGTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	41	-	13.6	1.09e-05	0.0992	AGTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	41	-	13.6	1.09e-05	0.0992	AGTGACGTCACG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	37	51	+	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	37	51	+	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	28	42	-	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	30	44	-	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	44	58	+	13.7931	1.09e-05	0.0047	CGCCCACCTCCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	44	58	+	13.7931	1.09e-05	0.0047	CGCCCACCTCCCGCC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	46	60	+	13.7931	1.09e-05	0.0047	CTCCCTCCTCCCCCA
SP2	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	36	50	-	13.7931	1.09e-05	0.0047	CCCCCTCCCTCCCGG
SP2	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	65	79	+	13.7931	1.09e-05	0.0047	CCCCCTCCCTCCCGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	73	87	+	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	73	87	+	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	73	87	+	13.7931	1.09e-05	0.0047	CCTCCTCCTCCTCCC
TBX19	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	88	107	+	13	1.09e-05	0.784	GGTGGCACCAGGCTGTGAAG
TBX19	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	88	107	+	13	1.09e-05	0.784	GGTGGCACCAGGCTGTGAAG
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	18	29	+	13.98	1.09e-05	0.537	TATTTACACAGT
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	+	13.8689	1.09e-05	0.0517	CGCCCGGCGGGGA
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	-	13.8689	1.09e-05	0.0517	CGCCCGCCGGGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	+	13.8689	1.09e-05	0.0517	CGCCCGCCGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	-	13.8689	1.09e-05	0.0517	CGCCCGGCGGGGA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	-	13.8689	1.09e-05	0.0517	TGCCCAGAGGGCC
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	64	77	+	12.2895	1.09e-05	0.557	CCAACAGCTGCCAC
FOXA1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	41	55	+	14.102	1.09e-05	0.511	TCTCTGTTGACTTAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	52	72	-	13	1.09e-05	0.00658	GGTGGAGCTGGGTGGTGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	79	99	-	13	1.09e-05	0.00658	GAGGGCCGGGGGAGGGAGAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	81	101	-	13	1.09e-05	0.00658	GGTGGAGCTGGGTGGTGAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	85	105	-	13	1.09e-05	0.00658	CGGGGACGGGGACGGGGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	14	34	+	13	1.09e-05	0.00658	GGTGGAGCTGGGTGGTGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	29	49	+	13	1.09e-05	0.00658	GGGAGAGAGGGGGGCGAAGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	35	55	+	13	1.09e-05	0.00658	TGGGAACGGGGGAGAAGAAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	43	63	+	13	1.09e-05	0.00658	GGTGGAGCTGGGTGGTGAAGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	44	54	+	14.0984	1.09e-05	0.0293	CCGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	61	71	-	14.0984	1.09e-05	0.0293	CCGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	61	71	-	14.0984	1.09e-05	0.0293	CCGGAAGCAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	31	47	-	9.94545	1.09e-05	0.011	GAGACCACGCGCCCTCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	31	47	-	9.94545	1.09e-05	0.011	GAGACCACGCGCCCTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	68	84	+	9.94545	1.09e-05	0.011	GCGGCCACGGCCACTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	68	84	+	9.94545	1.09e-05	0.011	GCGGCCACGGCCACTCC
SP8	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	10	21	-	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	36	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	37	+	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	41	+	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	43	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	43	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	43	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	43	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	43	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	24	35	-	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	24	35	-	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	50	+	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	32	43	-	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	43	54	-	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	56	67	+	13.6974	1.09e-05	0.0152	AACCCGCCCCCA
SP8	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	48	59	-	13.6974	1.09e-05	0.0152	AACCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	56	67	-	13.6974	1.09e-05	0.0152	ACCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	56	67	-	13.6974	1.09e-05	0.0152	ACCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	56	67	-	13.6974	1.09e-05	0.0152	ACCCCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	56	67	-	13.6974	1.09e-05	0.0152	ACCCCGCCCCTC
SP8	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	91	+	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	72	83	-	13.6974	1.09e-05	0.0152	TCCCCGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	78	89	-	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	105	+	13.6974	1.09e-05	0.0152	ACCCCTCCCCCC
POU1F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	2	15	-	13.6207	1.09e-05	0.835	TAAATGTAAATGAG
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	2	15	-	13.6207	1.09e-05	0.835	TAAATGTAAATGAG
Nr2e1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	57	65	+	13.5806	1.09e-05	1	AGAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	57	65	+	13.5806	1.09e-05	1	AGAAGTCAA
CTCF	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	23	+	12.623	1.09e-05	0.0647	TGCCCTTCAGGGGGCGGGA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	35	53	-	12.623	1.09e-05	0.0647	TGCCCTTCAGGGGGCGGGA
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	35	53	-	12.623	1.09e-05	0.0647	TGCCCTTCAGGGGGCGGGA
CTCF	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	80	+	12.623	1.09e-05	0.0647	TGCCCTTCAGGGGGCGGGA
CTCF	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	92	110	-	12.623	1.09e-05	0.0647	TGCCCTTCAGGGGGCGGGA
ESRRB	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	56	66	+	13.7414	1.09e-05	0.867	TGAAGGTCACT
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	20	37	-	13.1951	1.09e-05	0.061	AGCTCTCTCATTGGCTGC
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	20	37	-	13.1951	1.09e-05	0.061	AGCTCTCTCATTGGCTGC
NRF1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	32	42	+	13.6545	1.09e-05	0.0068	ACGCCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	55	65	+	13.6545	1.09e-05	0.0068	ACGCCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	50	60	-	13.6545	1.09e-05	0.0068	ACGCCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	73	83	-	13.6545	1.09e-05	0.0068	ACGCCGGCGCG
RFX5	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	+	11.2931	1.09e-05	0.0879	AGTTACCATGGCTCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	18	32	+	11.6034	1.09e-05	0.0283	TTCCTCCCACGCTTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	18	32	+	11.6034	1.09e-05	0.0283	TTCCTCCCACGCTTT
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	8	21	-	13.6923	1.09e-05	0.00804	CCTCCTCCTCCTCG
EGR1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	37	50	+	13.6923	1.09e-05	0.00804	GCCCCGCCGCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	58	71	+	13.6923	1.09e-05	0.00804	CCTCCTCCTCCTCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	69	82	+	13.6923	1.09e-05	0.00804	GGCCCTCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	76	89	+	13.6923	1.09e-05	0.00804	CCTCCTCCTCCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	76	89	+	13.6923	1.09e-05	0.00804	CCTCCTCCTCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	65	78	-	13.6923	1.09e-05	0.00804	GCCCCGCCGCCTGC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	74	87	-	13.6923	1.09e-05	0.00804	CGCCCGCTCCCGCG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	77	90	-	14.0909	1.09e-05	0.022	GGGTGTGAGGCCTG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	42	62	+	13.0484	1.09e-05	0.12	CTTAGGTTTCATTTTACGTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	53	73	+	13.0484	1.09e-05	0.12	TTTTTCTTTTTTTTTTTTTTT
FOXH1	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	7	17	-	14.2115	1.09e-05	1	TTGAATACACA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	67	77	+	13.8333	1.09e-05	0.269	CGCCGCCATTT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	67	77	+	13.8333	1.09e-05	0.269	CGCCGCCATTT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	38	52	+	13.3939	1.09e-05	0.169	GTGGGTGACTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	38	52	+	13.3939	1.09e-05	0.169	GTGGGTGACTCAGCG
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	90	104	+	13.3939	1.09e-05	0.169	TAACATGACATAGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	-	14.0328	1.09e-05	0.0626	AGCCTGGAGGGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	+	14.0909	1.09e-05	0.063	CGCCGGAGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	-	14.0909	1.09e-05	0.063	CGCCGGAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	+	14.0909	1.09e-05	0.063	CGCCGGAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	+	14.0909	1.09e-05	0.063	CGCCGGAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	+	14.0909	1.09e-05	0.063	CGCCGGAGGCT
Gata1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	4	14	-	14.0816	1.09e-05	0.687	ATCTTATCTCT
Gata1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	38	48	-	14.0816	1.09e-05	0.687	ATCTTATCTCT
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	24	36	-	14.102	1.09e-05	0.326	AAGAGGTCAGCAG
Vdr	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	10	25	+	9.88525	1.09e-05	0.544	GACTTCACCGAGGTCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	90	105	-	9.88525	1.09e-05	0.544	GACTTCACCGAGGTCA
Vdr	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	90	105	-	9.88525	1.09e-05	0.544	GACTTCACCGAGGTCA
GLIS2	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	14	27	+	12.5902	1.09e-05	0.176	CCCCCCCCGCGAGT
GLIS2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	49	62	+	12.5902	1.09e-05	0.176	CCCCCCCCGCGAGT
GLIS2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	53	66	-	12.5902	1.09e-05	0.176	CCCCCCCCGCGAGT
GLIS2	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	88	101	-	12.5902	1.09e-05	0.176	CCCCCCCCGCGAGT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	83	93	-	14.1837	1.09e-05	0.16	CTGCCGGGAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	83	93	-	14.1837	1.09e-05	0.16	CTGCCGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	83	93	-	14.1837	1.09e-05	0.16	CTGCCGGGAAT
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	83	93	-	14.1837	1.09e-05	0.16	CTGCCGGGAAT
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	51	64	+	13.6197	1.09e-05	0.128	TAAATAAGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	51	64	+	13.6197	1.09e-05	0.128	TAAATAAGGAAGTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	47	61	+	12.7049	1.09e-05	0.031	GGCCACTCCCTCCCG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	54	68	-	12.7049	1.09e-05	0.031	GGCCACTCCCTCCCG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	54	68	-	12.7049	1.09e-05	0.031	GGCCACTCCCTCCCG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	54	68	-	12.7049	1.09e-05	0.031	GGCCACTCCCTCCCG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	54	68	-	12.7049	1.09e-05	0.031	GGCCACTCCCTCCCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	37	-	9.29091	1.1e-05	0.123	AGGAAGAGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	63	-	9.29091	1.1e-05	0.123	AGGAAGAGGAAGTG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	16	29	+	12.7879	1.1e-05	0.207	CTGCCACGTGATTT
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	16	29	+	12.7879	1.1e-05	0.207	CTGCCACGTGATTT
Znf423	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	66	+	9.8427	1.1e-05	0.163	CGCCCCCCGGGGTGC
Znf423	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	49	63	-	9.8427	1.1e-05	0.163	CGCCCCCCGGGGTGC
Twist2	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	48	57	+	13.6885	1.1e-05	1	TCCATATGTG
Twist2	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	42	51	-	13.6885	1.1e-05	1	TCCATATGTG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	16	26	+	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	16	26	+	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	57	67	-	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	57	67	-	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	57	67	-	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	57	67	-	13.4228	1.1e-05	0.00936	ACCCCGCCCCT
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	25	38	-	14.2692	1.1e-05	0.135	GCAGGATGAGTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	25	38	-	14.2692	1.1e-05	0.135	GCAGGATGAGTCAG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	38	52	+	13.6364	1.1e-05	0.266	AGAAAGAGAGAGTCT
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	38	52	+	13.6364	1.1e-05	0.266	AGAAAGAGAGAGTCT
HOXA13	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	100	109	-	13.3056	1.1e-05	1	CCAATAAACA
HOXA13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	6	15	+	13.3056	1.1e-05	1	CCAATAAACA
HOXA13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	6	15	+	13.3056	1.1e-05	1	CCAATAAACA
HOXA13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	49	58	+	13.3056	1.1e-05	1	CCAATAAACA
HOXA13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	49	58	+	13.3056	1.1e-05	1	CCAATAAACA
HOXA13	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	99	108	+	13.3056	1.1e-05	1	CCAATAAACA
EGR4	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	24	39	-	13.4182	1.1e-05	0.031	CCCCGCCCGCGCGGTC
EGR4	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	76	91	+	13.4182	1.1e-05	0.031	CCCCGCCCGCGCGGTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	15	29	+	13.7759	1.1e-05	0.00472	CCCCCGCTCCCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	15	29	+	13.7759	1.1e-05	0.00472	CCCCCGCTCCCCGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	17	31	+	13.7759	1.1e-05	0.00472	CTCCCGCCCCGCTCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	17	31	+	13.7759	1.1e-05	0.00472	CTCCCGCCCCGCTCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	31	45	+	13.7759	1.1e-05	0.00472	GGCCCTCCTCTTCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	28	42	-	13.7759	1.1e-05	0.00472	GGCCCTCCTCTTCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	72	+	13.7759	1.1e-05	0.00472	ACCCCTCCCCCATCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	72	+	13.7759	1.1e-05	0.00472	ACCCCTCCCCCATCC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	84	98	-	13.7759	1.1e-05	0.00472	CTCCCGCCCCGCTCT
SP2	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	86	100	-	13.7759	1.1e-05	0.00472	CCCCCGCTCCCCGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	35	44	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	35	44	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	57	66	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	57	66	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	86	95	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	86	95	+	14.1571	1.1e-05	0.14	ACCAGCTGCC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	31	48	+	-5.36842	1.1e-05	0.0221	GGAAAGAAGAAGGGCGGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	67	84	-	-5.36842	1.1e-05	0.0221	GGAAAGAAGAAGGGCGGG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.0.0	100	112	-	13.9286	1.1e-05	0.729	CTGGCAGATGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.1.0	100	112	-	13.9286	1.1e-05	0.729	CTGGCAGATGTGG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	19	29	+	13.9848	1.1e-05	0.0388	CACCACGCCCA
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	85	98	-	13.5	1.1e-05	0.0897	GTTGCTAGGGCAAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	11	21	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	11	21	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	31	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	31	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	31	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	31	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	24	34	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	37	47	-	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	40	50	-	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	65	75	+	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	66	76	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	66	76	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	66	76	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	66	76	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	66	76	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	81	91	-	14.1154	1.1e-05	0.00527	CCCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	104	114	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	104	114	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	104	114	+	14.1154	1.1e-05	0.00527	GTCCCTCCTCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	32	46	-	11.5862	1.1e-05	0.0283	CCCCACCCCCGCTTC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	32	46	-	11.5862	1.1e-05	0.0283	CCCCACCCCCGCTTC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	32	46	-	11.5862	1.1e-05	0.0283	CCCCACCCCCGCTTC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	32	46	-	11.5862	1.1e-05	0.0283	CCCCACCCCCGCTTC
EGR3	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	69	83	-	11.5862	1.1e-05	0.0283	CTCCACCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	93	107	-	11.5862	1.1e-05	0.0283	CCACGCCCCGGCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	93	107	-	11.5862	1.1e-05	0.0283	CCACGCCCCGGCGCT
EGR3	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	32	46	+	11.5862	1.1e-05	0.0283	CTCCACCCCCGCCCC
EGR3	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	69	83	+	11.5862	1.1e-05	0.0283	CCCCACCCCCGCTTC
MAX	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	13.7692	1.1e-05	0.276	GCCACGTGCT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	13.7692	1.1e-05	0.276	GCCACGTGCT
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	13.7692	1.1e-05	0.276	GCCACGTGCT
MAX	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	13.7692	1.1e-05	0.276	GCCACGTGCT
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	19	37	-	12.6066	1.1e-05	0.0647	CCGCCGCGAGAGGGCGGGT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	19	37	-	12.6066	1.1e-05	0.0647	CCGCCGCGAGAGGGCGGGT
CTCF	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	78	96	+	12.6066	1.1e-05	0.0647	CCGCCGCGAGAGGGCGGGT
Myog	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	71	81	-	14.2857	1.1e-05	0.0882	CACAGCTGCAG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	63	76	+	10.8469	1.1e-05	0.0605	GTGGGGCTCTGGGG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	20	30	+	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	20	30	+	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	25	35	+	13.3621	1.1e-05	0.0586	ACGCCCACTCT
EGR2	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	74	84	+	13.3621	1.1e-05	0.0586	ACGCCCACTCT
EGR2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	2	12	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	31	41	-	13.3621	1.1e-05	0.0586	ACGCCCACTCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	64	74	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	64	74	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	64	74	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	64	74	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	64	74	-	13.3621	1.1e-05	0.0586	CCTCCCACGCT
NRF1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	20	30	+	13.6364	1.1e-05	0.00685	GCGGCGGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	85	95	-	13.6364	1.1e-05	0.00685	GCGGCGGCGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	21	31	+	13.1273	1.1e-05	0.0978	ACCCGGAAGCC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	21	31	+	13.1273	1.1e-05	0.0978	ACCCGGAAGCC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	21	31	+	13.1273	1.1e-05	0.0978	ACCCGGAAGCC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	75	85	+	13.1273	1.1e-05	0.0978	ACCCGGAAGCC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	75	85	+	13.1273	1.1e-05	0.0978	ACCCGGAAGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	68	-	14.1273	1.1e-05	0.033	CAACTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	68	-	14.1273	1.1e-05	0.033	CAACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	68	-	14.1273	1.1e-05	0.033	CAACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	68	-	14.1273	1.1e-05	0.033	CAACTTCCGGG
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	32	43	-	13.5281	1.1e-05	0.581	TTAATGCTGACA
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	32	43	-	13.5281	1.1e-05	0.581	TTAATGCTGACA
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	11	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	11	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	11	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	11	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	11	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	1	10	-	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	1	10	-	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	26	35	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	27	36	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	35	44	-	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	35	44	-	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	105	114	+	13.8349	1.1e-05	0.0248	TCCCCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	104	113	-	13.8349	1.1e-05	0.0248	TCCCCCCCCC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	1	15	-	9.83146	1.1e-05	0.163	CCCACCCAGGGATGC
RFX3	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	+	12.9848	1.1e-05	0.0784	AGTTACCATGGCTCCC
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	-	12.9848	1.1e-05	0.0784	CGTTGTCAGGGCGACC
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	-	12.9848	1.1e-05	0.0784	CGTTGTCAGGGCGACC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	19	33	+	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	19	33	+	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	19	33	+	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	19	33	+	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	83	97	+	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	18	32	-	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
NFYB	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	82	96	-	14.0962	1.1e-05	0.0845	GTTGGAGCCAATGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	40	60	-	12.9796	1.1e-05	0.0066	GAGGGAGGGAGACCGAGAGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	61	81	-	12.9796	1.1e-05	0.0066	GGAGGAGCCGAGGGTAATGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	61	81	-	12.9796	1.1e-05	0.0066	GGAGGAGCCGAGGGTAATGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	61	81	-	12.9796	1.1e-05	0.0066	GGAGGAGCCGAGGGTAATGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	61	81	-	12.9796	1.1e-05	0.0066	GGAGGAGCCGAGGGTAATGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	90	110	-	12.9796	1.1e-05	0.0066	GGAGCAGCGCAGGCTGGGGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	5	25	+	12.9796	1.1e-05	0.0066	GGAGCAGCGCAGGCTGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	14	34	+	12.9796	1.1e-05	0.0066	GGAGGAGTGGGGTGGAGTGAT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	36	56	+	12.9796	1.1e-05	0.0066	GGGGCTGGGGGTGGATAGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	55	75	+	12.9796	1.1e-05	0.0066	GAGGGAGGGAGACCGAGAGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	55	75	+	12.9796	1.1e-05	0.0066	AGGGGTGGGGCAGAAGAAAGG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	+	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	-	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	+	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	+	13.7091	1.1e-05	0.0397	CGCCGCAGGCC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	+	14.0152	1.1e-05	0.585	AACACGTGTG
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	-	14.0152	1.1e-05	0.585	AACACGTGTG
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	-	14.0152	1.1e-05	0.585	AACACGTGTG
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	-	14.0152	1.1e-05	0.585	AACACGTGTG
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	-	14.0152	1.1e-05	0.585	AACACGTGTG
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	-	14.0152	1.1e-05	0.585	AACACGTGTG
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	13.8103	1.1e-05	0.188	ATCACGTGAG
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	13.8103	1.1e-05	0.188	ATCACGTGAG
ELK1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
ELK1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.8085	1.1e-05	0.0373	ACCGGAAGCC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	13.8689	1.1e-05	0.333	GGCACGTGTT
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	13.8689	1.1e-05	0.333	GGCACGTGTT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	30	-	13.8966	1.1e-05	0.0907	CACAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	30	-	13.8966	1.1e-05	0.0907	CACAGCTGCC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	30	-	13.8966	1.1e-05	0.0907	CACAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	30	-	13.8966	1.1e-05	0.0907	CACAGCTGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	21	37	+	9.90909	1.1e-05	0.0111	CCGGCCCCGCCCGTTCC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	21	37	+	9.90909	1.1e-05	0.0111	CCGGCCCCGCCCGTTCC
SP4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	78	94	-	9.90909	1.1e-05	0.0111	CCGGCCCCGCCCGTTCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	16	27	+	14.0152	1.1e-05	0.101	CAGCGTCCGGGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	16	27	+	14.0152	1.1e-05	0.101	CAGCGTCCGGGG
OLIG2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	14.3103	1.1e-05	1	AACATATGCT
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	14.3103	1.1e-05	1	AACATATGCT
OLIG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	14.3103	1.1e-05	1	AACATATGCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	11	28	-	-5.38158	1.1e-05	0.0221	GGGAGCGAGGGAGGGAGG
Zfx	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	26	39	+	14.0758	1.1e-05	0.022	CTGCCCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	39	52	+	14.0758	1.1e-05	0.022	ACAGGCTGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	44	57	-	14.0758	1.1e-05	0.022	GGGGTTGCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	44	57	-	14.0758	1.1e-05	0.022	GGGGTTGCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	44	57	-	14.0758	1.1e-05	0.022	GGGGTTGCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	78	91	+	14.0758	1.1e-05	0.022	CTGCCCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	78	91	+	14.0758	1.1e-05	0.022	CTGCCCTCGGCCTC
NFYA	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	47	64	+	13.1707	1.1e-05	0.061	GCCATGTTGATTGGCTCA
NFYA	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	51	68	-	13.1707	1.1e-05	0.061	GCCATGTTGATTGGCTCA
Klf12	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	22	36	-	12.6885	1.1e-05	0.031	TGCCCCGCCCTCACC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	79	93	+	12.6885	1.1e-05	0.031	TGCCCCGCCCTCACC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	79	93	+	12.6885	1.1e-05	0.031	TGCCCCGCCCTCACC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	79	93	+	12.6885	1.1e-05	0.031	TGCCCCGCCCTCACC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	34	-	13.5323	1.1e-05	0.137	TGGGGCGGCAGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	34	-	13.5323	1.1e-05	0.137	TGGGGCGGCAGGGCGGGGC
HNF4G	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	7	21	-	13.7115	1.1e-05	0.265	AGACTGCAAAGGCCA
HNF4G	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	94	108	+	13.7115	1.1e-05	0.265	AGACTGCAAAGGCCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	26	39	+	13.6731	1.1e-05	0.00814	TCTCCTCCTCCTCC
EGR3	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	25	39	-	11.569	1.1e-05	0.0283	CCCCGCCCGCGCGGT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	30	44	+	11.569	1.1e-05	0.0283	GCCCTCCCCCGCGTT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	30	44	+	11.569	1.1e-05	0.0283	GCCCTCCCCCGCGTT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	30	44	+	11.569	1.1e-05	0.0283	GCCCTCCCCCGCGTT
EGR3	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	76	90	+	11.569	1.1e-05	0.0283	CCCCGCCCGCGCGGT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	+	13.9423	1.1e-05	0.0588	TGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	+	13.9423	1.1e-05	0.0588	AGCCTCGGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	-	13.9423	1.1e-05	0.0588	TGCCTCGGGCA
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	14	-	12.9592	1.11e-05	0.0747	TGTGACGTCATA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	49	+	12.9592	1.11e-05	0.0747	TGTGACGTCATA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	49	+	12.9592	1.11e-05	0.0747	TGTGACGTCATA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	77	-	12.9592	1.11e-05	0.0747	TGTGACGTCATA
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	101	112	+	12.9592	1.11e-05	0.0747	TGTGACGTCATA
ETV1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ETV1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.4182	1.11e-05	0.0662	ACCGGAAGCC
ELK3	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	13.7931	1.11e-05	0.0544	ACCGGAAATA
TFEB	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	13.8654	1.11e-05	0.094	GACACGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	13.8654	1.11e-05	0.094	GACACGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	13.8654	1.11e-05	0.094	GACACGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	13.8654	1.11e-05	0.094	GACACGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	13.8654	1.11e-05	0.094	GACACGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	13.8654	1.11e-05	0.094	GACACGTGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	48	61	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	48	61	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	48	61	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	93	106	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	93	106	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	93	106	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	93	106	+	13.4828	1.11e-05	0.0897	GTTACCAGGACAAC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	39	49	-	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	39	49	-	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	81	91	-	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	5	15	+	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	5	15	+	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	5	15	+	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	5	15	+	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	25	35	+	14.3276	1.11e-05	0.0272	GAGCGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	68	78	+	14.3276	1.11e-05	0.0272	GCGCGGGAGGA
E2F6	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	95	105	+	14.3276	1.11e-05	0.0272	GCGCGGGAGGA
Sox3	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	53	62	+	14.069	1.11e-05	0.659	CCTTTGTCTG
Sox3	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	85	94	-	14.069	1.11e-05	0.659	CCTTTGTCTG
ETV2	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	26	36	+	14.1967	1.11e-05	0.118	GACCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	47	57	+	14.1967	1.11e-05	0.118	GACCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	47	57	+	14.1967	1.11e-05	0.118	GACCGGAAGCG
ETV2	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	68	-	14.1967	1.11e-05	0.118	GACCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	89	-	14.1967	1.11e-05	0.118	GACCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	89	-	14.1967	1.11e-05	0.118	GACCGGAAGCG
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	66	85	-	9.33028	1.11e-05	0.0382	ACACTCAACACACACTCACA
SP3	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	91	+	13.4065	1.11e-05	0.00936	GCCCCTCCCAC
SP3	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	24	34	-	13.4065	1.11e-05	0.00936	GCCCCTCCCAC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	75	84	-	14.0909	1.11e-05	0.0969	GACACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	75	84	-	14.0909	1.11e-05	0.0969	GACACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	75	84	-	14.0909	1.11e-05	0.0969	GACACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	75	84	-	14.0909	1.11e-05	0.0969	GACACGCGCC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	15	27	+	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	15	27	+	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	15	27	+	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	15	27	+	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	50	62	-	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	50	62	-	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	50	62	-	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	50	62	-	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	50	62	-	13.3182	1.11e-05	0.341	GTAAATGTTTAAC
STAT1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	99	109	+	14.4	1.11e-05	0.167	ATTCTAGGAAA
GLIS1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	97	112	-	-0.769231	1.11e-05	0.305	ACACCCGCCGCGGAGC
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	56	69	-	10.8265	1.11e-05	0.0605	GGGGACGAGGGGGG
SP2	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	2	16	-	13.7586	1.11e-05	0.00473	GCCCCGCCCCAAAGG
SP2	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	9	23	-	13.7586	1.11e-05	0.00473	CCCCCGCCCAGCCCG
SP2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	44	+	13.7586	1.11e-05	0.00473	GCCCCGCCCCAAAGG
SP2	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	35	49	+	13.7586	1.11e-05	0.00473	TGCCCGCCCACGTCC
SP2	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	42	56	-	13.7586	1.11e-05	0.00473	TGCCCGCCCACGTCC
SP2	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	59	73	+	13.7586	1.11e-05	0.00473	TGCCCGCCCACGTCC
SP2	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	66	80	-	13.7586	1.11e-05	0.00473	TGCCCGCCCACGTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	96	+	13.7586	1.11e-05	0.00473	GCTCCTCCCCCTTTC
SP2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	71	85	-	13.7586	1.11e-05	0.00473	GCCCCGCCCCAAAGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	113	+	13.7586	1.11e-05	0.00473	CTCCCACCCCCTTCT
SP2	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	113	+	13.7586	1.11e-05	0.00473	GCCCCGCCCCAAAGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	113	+	13.7586	1.11e-05	0.00473	CTCCCACCCCCTTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	113	+	13.7586	1.11e-05	0.00473	CTCCCACCCCCTTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	113	+	13.7586	1.11e-05	0.00473	CTCCCACCCCCTTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	113	+	13.7586	1.11e-05	0.00473	CTCCCACCCCCTTCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	51	66	+	13.4	1.11e-05	0.031	CCCCGCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	51	66	+	13.4	1.11e-05	0.031	CCCCGCCCCCCCCCCC
FOS	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	29	39	+	14.6383	1.11e-05	0.169	GATGAGTCATC
RFX3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	+	12.9697	1.11e-05	0.0784	AGTCCCCATGGTGACA
RFX3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	-	12.9697	1.11e-05	0.0784	AGTCCCCATGGTGACA
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	9	22	-	13.7419	1.11e-05	0.232	TTTCCTGGAGTGAC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	9	22	-	13.7419	1.11e-05	0.232	TTTCCTGGAGTGAC
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	9	22	-	13.7419	1.11e-05	0.232	TTTCCTGGAGTGAC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	9	22	-	13.7419	1.11e-05	0.232	TTTCCTGGAGTGAC
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	9	22	-	13.7419	1.11e-05	0.232	TTTCCTGGAGTGAC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	-	14	1.11e-05	0.0626	CGCCCCTCGGGCC
TP53	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	96	113	+	11.2245	1.11e-05	0.669	CACATGACGGAGCATGAC
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	96	113	+	11.2245	1.11e-05	0.669	CACATGACGGAGCATGAC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	-	13.6909	1.11e-05	0.0397	CGCCCCGGGCA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	64	83	-	9.3211	1.11e-05	0.0382	CTCCTCCACACCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	64	83	-	9.3211	1.11e-05	0.0382	CTCCTCCACACCCCCACCCC
IRF8	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	14	27	+	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	13	26	-	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	13	26	-	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	13	26	-	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	13	26	-	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	89	102	+	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
IRF8	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	88	101	-	5.76364	1.11e-05	0.32	CAGAAATCGAAAGT
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	28	38	-	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	28	38	-	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	53	63	-	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	52	62	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	79	89	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	79	89	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	79	89	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	79	89	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	80	90	+	14.3077	1.11e-05	0.172	AGGATGACTCA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	5	18	-	9.23636	1.11e-05	0.123	GGAAGGGGGAAGTA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	38	51	+	9.23636	1.11e-05	0.123	GGAAGGGGGAAGTA
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	67	81	-	12.8689	1.11e-05	0.26	GTGACTCAGGAATGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	44	55	+	13.5306	1.11e-05	0.0857	CGCCCGGAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	-	13.5306	1.11e-05	0.0857	CGCCCGGGGGGA
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	61	75	-	13.4091	1.11e-05	0.175	CCACTTTCATTTCCG
HES5	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	54	65	+	9.91379	1.11e-05	0.213	CGCCACGTGCTG
HES5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	61	-	9.91379	1.11e-05	0.213	CGCCACGTGCTG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	61	-	9.91379	1.11e-05	0.213	CGCCACGTGCTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	60	73	+	11.383	1.11e-05	0.0959	CCCCCCCCGCCGCT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	38	55	+	-5.40789	1.11e-05	0.0221	GGCCGGGAGGAGGGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	23	40	-	-5.40789	1.11e-05	0.0221	GTGAGGGAGGGAGGGAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	60	77	-	-5.40789	1.11e-05	0.0221	GGCCGGGAGGAGGGAAGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	31	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	31	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	70	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	70	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	70	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	70	-	14.1091	1.11e-05	0.033	CCGCTTCCGCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	12	+	13.8276	1.11e-05	0.00965	TCCACGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	50	60	+	13.8276	1.11e-05	0.00965	CACCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	62	72	+	13.8276	1.11e-05	0.00965	TCCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	62	72	+	13.8276	1.11e-05	0.00965	TCCACGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	65	75	+	13.8276	1.11e-05	0.00965	CACCCGCCCAC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	81	91	+	13.8276	1.11e-05	0.00965	CACCCGCCCAC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	24	34	-	13.8276	1.11e-05	0.00965	CACCCGCCCAC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	40	50	-	13.8276	1.11e-05	0.00965	CACCCGCCCAC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	9	20	+	14	1.11e-05	0.101	CTGCGTCCGCAC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	9	20	+	14	1.11e-05	0.101	CTGCGTCCGCAC
HINFP	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	22	33	+	14	1.11e-05	0.101	CGCCGTCCGCAG
HINFP	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	82	93	-	14	1.11e-05	0.101	CGCCGTCCGCAG
HINFP	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	95	106	-	14	1.11e-05	0.101	CTGCGTCCGCAC
Creb5	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	32	43	-	13.5455	1.11e-05	0.0992	CATGACATCATC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	65	85	-	12.9592	1.11e-05	0.00665	GAAGATGGGGGAGGGGAGAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	65	85	-	12.9592	1.11e-05	0.00665	GAAGATGGGGGAGGGGAGAGC
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	67	87	-	12.9592	1.11e-05	0.00665	GGAGGGGTGGGGGGGAAGGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	9	29	+	12.9592	1.11e-05	0.00665	GGGAGAGGCGGGGGAAGGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	15	35	+	12.9592	1.11e-05	0.00665	GGAGGGAGGCAGGGAGGGAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	28	48	+	12.9592	1.11e-05	0.00665	GGAGGGGTGGGGGGGAAGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	41	61	+	12.9592	1.11e-05	0.00665	GGTGGCGGAGAAAAAGTAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	41	61	+	12.9592	1.11e-05	0.00665	GGTGGCGGAGAAAAAGTAGGG
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	27	43	+	11.9737	1.11e-05	0.481	CAGGTTACGTCAGCGGC
Gmeb1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	68	84	+	11.9737	1.11e-05	0.481	CAGGTTACGTCAGCGGC
Gmeb1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	31	47	-	11.9737	1.11e-05	0.481	CAGGTTACGTCAGCGGC
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	72	88	-	11.9737	1.11e-05	0.481	CAGGTTACGTCAGCGGC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	3	16	+	10.8061	1.11e-05	0.0605	GGGGAGAAAGGGGG
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	3	12	-	13.623	1.12e-05	0.172	AATGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	3	12	-	13.623	1.12e-05	0.172	AATGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	39	+	13.623	1.12e-05	0.172	AATGACGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	35	44	-	13.623	1.12e-05	0.172	AATGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	76	85	-	13.623	1.12e-05	0.172	AATGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	103	112	+	13.623	1.12e-05	0.172	AATGACGTCA
GLI2	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	30	41	-	13.6724	1.12e-05	0.33	CCGCCCACCCTG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	45	56	-	13.6724	1.12e-05	0.33	CCGCCCACCCTG
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	45	56	-	13.6724	1.12e-05	0.33	CCGCCCACCCTG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	12	22	-	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	12	22	-	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	22	32	-	14.082	1.12e-05	0.0293	GCGGAAGCGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	66	76	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	66	76	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	68	78	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	68	78	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	68	78	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	83	93	+	14.082	1.12e-05	0.0293	GCGGAAGCGGA
Gabpa	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	93	103	+	14.082	1.12e-05	0.0293	CCGGAAGCTGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	81	93	+	14.2653	1.12e-05	0.107	TCCAGCTGCCGTT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	81	93	+	14.2653	1.12e-05	0.107	TCCAGCTGCCGTT
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	81	93	+	14.2653	1.12e-05	0.107	TCCAGCTGCCGTT
GSC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	51	60	-	12.1864	1.12e-05	1	CCTAATCCCT
GSC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	51	60	-	12.1864	1.12e-05	1	CCTAATCCCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	39	56	-	-5.42105	1.12e-05	0.0222	CGGAGGGAGGGAGGGAGG
IRF1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	65	85	+	13	1.12e-05	0.12	CTTTCCTTCCTCTTTCCTTAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	71	91	+	13	1.12e-05	0.12	CATAAGTTTCAGTTTCCTAAA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	82	102	+	13	1.12e-05	0.12	TGGAACTTTCACTTTGGACTT
ETV5	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.9273	1.12e-05	0.0689	GCCGGATGTG
ETV5	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.9273	1.12e-05	0.0689	GCCGGATGTG
ETV5	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.9273	1.12e-05	0.0689	GCCGGATGTG
ETV5	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.9273	1.12e-05	0.0689	GCCGGATGTG
ELF3	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	26	38	+	12.7759	1.12e-05	0.108	ATACCGGAAGTGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	6	19	-	13.6538	1.12e-05	0.00821	TCGCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	40	+	13.6538	1.12e-05	0.00821	GCCCCGCCCTCGGC
EGR1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	40	53	-	13.6538	1.12e-05	0.00821	CTCCCGCCCTCGCT
EGR1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	62	75	+	13.6538	1.12e-05	0.00821	CTCCCGCCCTCGCT
CREB3	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	41	54	+	13.4429	1.12e-05	0.196	TCTCCACGTCACAC
FOXB1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	17	27	-	13.6731	1.12e-05	1	TGTGTAAATAA
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	90	102	-	13.7869	1.12e-05	0.343	CTGTCTCCCTCCC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	+	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	-	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	+	10.6129	1.12e-05	0.0319	CGCGCGTGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	-	10.6129	1.12e-05	0.0319	GGCACGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	+	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	-	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	+	10.6129	1.12e-05	0.0319	CGCACGCGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	-	10.6129	1.12e-05	0.0319	GGCGCGTGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	34	44	+	14.4655	1.12e-05	0.033	AGGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	34	44	+	14.4655	1.12e-05	0.033	AGGCGGGAGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	62	72	+	14.4655	1.12e-05	0.033	CGGCGGGAGCG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	60	70	-	14.4655	1.12e-05	0.033	CGGCGGGAGCG
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	50	64	-	9.79775	1.12e-05	0.163	GGAACCCAGGTTGCC
PAX1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	64	80	+	11.1455	1.12e-05	0.48	AGTCCCGCACCAACGCC
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	35	51	-	11.1455	1.12e-05	0.48	AGTCCCGCACCAACGCC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	35	51	-	11.1455	1.12e-05	0.48	AGTCCCGCACCAACGCC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	35	51	-	11.1455	1.12e-05	0.48	AGTCCCGCACCAACGCC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	35	51	-	11.1455	1.12e-05	0.48	AGTCCCGCACCAACGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	56	70	-	11.5345	1.12e-05	0.0283	CGCCGCCGCCGCATC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	56	70	-	11.5345	1.12e-05	0.0283	CGCCGCCGCCGCATC
TFAP2A	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	+	13.6727	1.12e-05	0.0397	CGCCGGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	-	13.6727	1.12e-05	0.0397	CGCCGGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	-	13.6727	1.12e-05	0.0397	CGCCGGAGGCG
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	20	+	12.9388	1.12e-05	0.0747	TCTGACGTCACT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	14	25	-	12.9388	1.12e-05	0.0747	TCTGACGTCACT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	14	25	-	12.9388	1.12e-05	0.0747	TCTGACGTCACT
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	101	+	12.9388	1.12e-05	0.0747	TCTGACGTCACT
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	95	106	-	12.9388	1.12e-05	0.0747	TCTGACGTCACT
ESX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	11.2639	1.12e-05	1	GCCAATTACC
ESX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	11.2639	1.12e-05	1	GCCAATTACC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	65	79	+	13.3784	1.12e-05	0.138	TCAGGGCAGGGGTGA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	37	51	-	13.6154	1.12e-05	0.426	GGGGCAGGCAGGCCT
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	37	51	-	13.6154	1.12e-05	0.426	GGGGCAGGCAGGCCT
Klf12	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	11	25	-	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	34	48	-	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	34	48	-	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	34	48	-	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	34	48	-	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	67	81	+	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
Klf12	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	90	104	+	12.6557	1.12e-05	0.031	GGCCCCGCCCCTGAC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	3	16	+	10.7959	1.12e-05	0.0605	GGGGGCTGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	3	16	+	10.7959	1.12e-05	0.0605	GGGGGCTGGGGGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	71	87	-	9.85455	1.12e-05	0.0113	GAGGTCCCGCCCCCAAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	71	87	-	9.85455	1.12e-05	0.0113	GAGGTCCCGCCCCCAAC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	9	23	-	13.7414	1.12e-05	0.00473	CCTCCGCCCACCTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	9	23	-	13.7414	1.12e-05	0.00473	CCTCCGCCCACCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	16	30	-	13.7414	1.12e-05	0.00473	ACCCCGCCCATTGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	16	30	-	13.7414	1.12e-05	0.00473	ACCCCGCCCATTGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	16	30	-	13.7414	1.12e-05	0.00473	ACCCCGCCCATTGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	16	30	-	13.7414	1.12e-05	0.00473	ACCCCGCCCATTGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	35	49	+	13.7414	1.12e-05	0.00473	AGCCCGCCCCCACGT
SP2	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	26	40	-	13.7414	1.12e-05	0.00473	CCTCCGCCCACCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	66	80	+	13.7414	1.12e-05	0.00473	GTCCCTCCTCCTTTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	66	80	+	13.7414	1.12e-05	0.00473	GTCCCTCCTCCTTTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	66	80	+	13.7414	1.12e-05	0.00473	CACCCGCCCCCTTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	66	80	+	13.7414	1.12e-05	0.00473	CACCCGCCCCCTTCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	66	80	+	13.7414	1.12e-05	0.00473	CACCCGCCCCCTTCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	66	80	+	13.7414	1.12e-05	0.00473	GTCCCTCCTCCTTTG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	75	89	+	13.7414	1.12e-05	0.00473	CCTCCGCCCACCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	75	89	+	13.7414	1.12e-05	0.00473	CCTCCGCCCACCTCC
TP73	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	+	12.8269	1.12e-05	0.574	GACAAGCCCGGGCTTGTG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	70	83	+	12.6286	1.12e-05	0.0898	GGATGACGTCAGTT
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	70	83	+	12.6286	1.12e-05	0.0898	GGATGACGTCAGTT
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	70	83	+	12.6286	1.12e-05	0.0898	GGATGACGTCAGTT
ETV3	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	13.493	1.12e-05	0.07	ACCGGAAATA
Myc	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	41	50	+	14.1273	1.12e-05	0.189	CCATGTGGCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	54	+	14.1273	1.12e-05	0.189	CCACGTGCCC
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	54	+	14.1273	1.12e-05	0.189	CCACGTGCCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	34	-	14.1273	1.12e-05	0.189	CCACGTGCCC
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	34	-	14.1273	1.12e-05	0.189	CCACGTGCCC
Myc	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	65	74	-	14.1273	1.12e-05	0.189	CCATGTGGCC
EGR4	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	52	67	+	13.3818	1.12e-05	0.031	CCCCGCCCGCGCGCGC
EGR4	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	48	63	-	13.3818	1.12e-05	0.031	CCCCGCCCGCGCGCGC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	8	21	+	5.70909	1.12e-05	0.32	CCAAAAGTGAAAGT
NFYA	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	11	28	+	13.1341	1.12e-05	0.061	CGGGCGCCCATTGGCTGC
NFYA	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	10	27	-	13.1341	1.12e-05	0.061	CGGGCGCCCATTGGCTGC
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	88	105	+	13.1341	1.12e-05	0.061	CGGGCGCCCATTGGCTGC
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	87	104	-	13.1341	1.12e-05	0.061	CGGGCGCCCATTGGCTGC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	+	13.5204	1.12e-05	0.0857	CGCCCTCGGGGA
TFE3	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	13.0204	1.12e-05	0.0731	GTCACGTGCC
Gata1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	37	47	-	14.0612	1.12e-05	0.687	TTCTTATCTGG
Gata1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	68	78	+	14.0612	1.12e-05	0.687	TTCTTATCTGG
Hes2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	4	16	-	12.6032	1.12e-05	0.377	GAGGGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	32	44	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	32	44	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	62	74	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	68	80	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	68	80	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	68	80	-	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	83	95	-	12.6032	1.12e-05	0.377	GAGGGGCACGTGA
Hes2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	20	32	+	12.6032	1.12e-05	0.377	GAGGGGCACGTGA
Hes2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	35	47	+	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	41	53	+	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	41	53	+	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	41	53	+	12.6032	1.12e-05	0.377	TGCAGACACGTGA
Hes2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	99	111	+	12.6032	1.12e-05	0.377	GAGGGGCACGTGA
Klf1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	91	101	+	13.9697	1.12e-05	0.0388	GGACCCACCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	33	43	-	13.9697	1.12e-05	0.0388	CCCCACACCCA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	13	23	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	13	23	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	33	43	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	33	43	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	90	100	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	90	100	-	13.8182	1.12e-05	0.269	GGCCGCCATGA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	51	61	+	14.0408	1.12e-05	0.672	ATTTCACAACA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	11	21	-	13.2759	1.13e-05	0.0586	ACGCCCACACG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	11	21	-	13.2759	1.13e-05	0.0586	ACGCCCACACG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	11	21	-	13.2759	1.13e-05	0.0586	ACGCCCACACG
Foxq1	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	58	68	-	14.1327	1.13e-05	1	CAATGTTTATA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	36	53	-	-5.44737	1.13e-05	0.0222	GGAAAGGGGGAGAGAAGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	51	65	+	13.1429	1.13e-05	0.0808	GGCGGTCAGAGGGTA
NR2C2	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	50	64	-	13.1429	1.13e-05	0.0808	GGCGGTCAGAGGGTA
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	16	26	+	13.8103	1.13e-05	0.00973	GACACGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	16	26	+	13.8103	1.13e-05	0.00973	GACACGCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	89	99	-	13.8103	1.13e-05	0.00973	GACACGCCTCC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	68	88	-	12.9388	1.13e-05	0.0067	TGAGGCGGTGGGGGAAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	68	88	-	12.9388	1.13e-05	0.0067	TGAGGCGGTGGGGGAAGTAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	68	88	-	12.9388	1.13e-05	0.0067	AAATGAGGGAAGAGGAAGGGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	93	113	-	12.9388	1.13e-05	0.0067	GGAGGAAGAGGAGATGGGCTA
ZNF263	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	2	22	+	12.9388	1.13e-05	0.0067	GGAGGAAGAGGAGATGGGCTA
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	48	68	+	12.9388	1.13e-05	0.0067	GGGGGTGGGTGAGAAAAAAAA
Crx	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	61	71	-	13.931	1.13e-05	1	AAGAGGATTAT
RFX3	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	+	12.9394	1.13e-05	0.0785	TGGAACTATGGCAACG
RFX3	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	-	12.9394	1.13e-05	0.0785	TGGAACTATGGCAACG
E2F7	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	2	15	+	3.40984	1.13e-05	1	TTTTCGCGCCGAAT
E2F7	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	100	113	-	3.40984	1.13e-05	1	TTTTCGCGCCGAAT
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	17	30	+	14.2308	1.13e-05	0.135	TGGGTATGAGTCAC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	41	54	-	14.2308	1.13e-05	0.135	AAAAGCTGACTCAC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	3	16	-	13.6346	1.13e-05	0.00827	GCGCCTCCTCCGCT
EGR1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	45	58	+	13.6346	1.13e-05	0.00827	GCGCCTCCTCCGCT
EGR1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	57	70	-	13.6346	1.13e-05	0.00827	GCGCCTCCTCCGCT
SP4	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	26	42	-	9.83636	1.13e-05	0.0113	GCAGCCCCGCCCTTTGA
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	+	13.9836	1.13e-05	0.0626	AGCCCGGCGGGCG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	-	13.9836	1.13e-05	0.0626	AGCCCGGCGGGCG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	28	38	+	14.5818	1.13e-05	0.113	TGGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	44	-	14.5818	1.13e-05	0.113	TGGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	75	-	14.5818	1.13e-05	0.113	TGATGAGTCAC
RUNX1	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	18	28	-	13.3793	1.13e-05	0.215	TCCTGTGGTTA
RUNX1	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	87	97	+	13.3793	1.13e-05	0.215	TCCTGTGGTTA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	9	22	+	13.4286	1.13e-05	0.196	CTGCAACGTCACAA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	9	22	+	13.4286	1.13e-05	0.196	CTGCAACGTCACAA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	57	70	-	13.4286	1.13e-05	0.196	CTGCAACGTCACAA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	57	70	-	13.4286	1.13e-05	0.196	CTGCAACGTCACAA
KLF14	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	72	85	+	13.0345	1.13e-05	0.0174	GGACCCGCCCCCGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	30	43	-	13.0345	1.13e-05	0.0174	GGACCCGCCCCCGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	30	43	-	13.0345	1.13e-05	0.0174	GGACCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	30	43	-	13.0345	1.13e-05	0.0174	GGACCCGCCCCCGA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	40	53	+	14.0455	1.13e-05	0.0225	TCGTCCCAGGCCTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	20	29	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	20	29	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	33	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	24	33	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	46	55	+	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	46	55	+	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	55	64	+	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	49	58	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	50	59	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	59	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	69	-	13.9615	1.13e-05	0.0614	AGAGGAAGTG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	37	51	+	9.77528	1.13e-05	0.163	GCACCACAGGGTTCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	24	+	9.26606	1.13e-05	0.0382	CCCCCCCCCCCCCCCAGTGT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	33	45	+	14.2449	1.13e-05	0.107	TCCAGCTGCCTCG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	78	+	14.2449	1.13e-05	0.107	AACAGCTGCCACC
ELF5	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	69	79	-	13.0909	1.13e-05	0.0978	ACCAGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	82	92	+	13.0909	1.13e-05	0.0978	ACCAGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	82	92	+	13.0909	1.13e-05	0.0978	ACCAGGAAGCG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	25	36	-	13.4032	1.13e-05	0.281	GCGCCCACCGGG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	25	36	-	13.4032	1.13e-05	0.281	GCGCCCACCGGG
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	91	105	-	13.6731	1.13e-05	0.265	CAAAATCAAAGTTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	91	105	-	13.6731	1.13e-05	0.265	CAAAATCAAAGTTCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	20	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	20	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	22	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	22	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	22	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	22	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	25	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	31	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	40	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	40	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	40	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	41	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	42	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	59	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	84	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	94	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	95	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	100	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	107	+	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	8	18	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	8	18	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	15	25	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	29	39	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	29	39	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	31	41	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	45	55	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	45	55	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	45	55	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	71	81	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	71	81	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	74	84	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	75	85	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	75	85	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
SP3	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	84	94	-	13.3984	1.13e-05	0.00936	GCCCCGCCTCC
NR1H2::RXRA	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	15	31	-	1.83146	1.13e-05	0.401	CGGGGTCATTGCTCAAC
NR1H2::RXRA	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	84	100	+	1.83146	1.13e-05	0.401	CGGGGTCATTGCTCAAC
NR2C2	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	17	31	-	13.1286	1.13e-05	0.0808	GGAGGGGGGAGGGCG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	84	98	+	13.1286	1.13e-05	0.0808	GGAGGGGGGAGGGCG
ELF3	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	11	23	-	12.7414	1.13e-05	0.108	CAGCAGGAAGTGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	2	17	-	13.3636	1.14e-05	0.031	CCCCGCCCCCTCATCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	2	17	-	13.3636	1.14e-05	0.031	CCCCGCCCCCTCATCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	19	34	-	13.3636	1.14e-05	0.031	TCCCGCCCCCGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	19	34	-	13.3636	1.14e-05	0.031	TCCCGCCCCCGCCGGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	52	67	+	13.3636	1.14e-05	0.031	GCCCGCCCTCGCAGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	52	67	+	13.3636	1.14e-05	0.031	GCCCGCCCTCGCAGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	52	67	+	13.3636	1.14e-05	0.031	GCCCGCCCTCGCAGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	50	65	-	13.3636	1.14e-05	0.031	CCCCGCCCCCTCATCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	50	65	-	13.3636	1.14e-05	0.031	CCCCGCCCCCTCATCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.2241	1.14e-05	0.0752	TCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.2241	1.14e-05	0.0752	TCCGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.2241	1.14e-05	0.0752	TCCGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.2241	1.14e-05	0.0752	TCCGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.2241	1.14e-05	0.0752	TCCGGAAGTG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	9	25	+	9.81818	1.14e-05	0.0114	CTCGCCCCGCCCCGCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	5	19	+	13.7241	1.14e-05	0.00477	CTTCCGCCCCGTCCC
SP2	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	20	34	-	13.7241	1.14e-05	0.00477	GGCCCACCCTCTGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	25	39	-	13.7241	1.14e-05	0.00477	GCCCCGCCTCGCTGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	25	39	-	13.7241	1.14e-05	0.00477	GCCCCGCCTCGCTGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	41	55	+	13.7241	1.14e-05	0.00477	CTTCCGCCCCGTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	38	52	-	13.7241	1.14e-05	0.00477	TCCCCACCCTCTCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	67	81	-	13.7241	1.14e-05	0.00477	GCCCCGCCTCGCTGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	67	81	-	13.7241	1.14e-05	0.00477	GCCCCGCCTCGCTGA
SP2	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	81	95	+	13.7241	1.14e-05	0.00477	GGCCCACCCTCTGCG
REST	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	19	39	-	9.7551	1.14e-05	0.198	GTCCAGACCAAGGTCAGCGGA
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	76	96	+	9.7551	1.14e-05	0.198	GTCCAGACCAAGGTCAGCGGA
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	76	96	+	9.7551	1.14e-05	0.198	GTCCAGACCAAGGTCAGCGGA
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	76	96	+	9.7551	1.14e-05	0.198	GTCCAGACCAAGGTCAGCGGA
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	76	96	+	9.7551	1.14e-05	0.198	GTCCAGACCAAGGTCAGCGGA
POU3F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	32	43	+	13.4578	1.14e-05	0.89	AAATGCAAATGA
RARA	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	87	104	+	-0.984848	1.14e-05	1	GAGGTCAGAAGTCCACAG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	39	50	+	13.6182	1.14e-05	0.0893	CGCCCGCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	39	50	+	13.6182	1.14e-05	0.0893	CGCCCGCGGGCT
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	65	76	-	13.6182	1.14e-05	0.0893	CGCCCGCGGGCT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	-	12.9184	1.14e-05	0.0747	GGTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	-	12.9184	1.14e-05	0.0747	GGTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	-	12.9184	1.14e-05	0.0747	GGTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	-	12.9184	1.14e-05	0.0747	GGTTACGTCACC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	21	32	+	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	21	32	+	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	21	32	+	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	21	32	-	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	21	32	-	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	21	32	-	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	83	94	+	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	83	94	-	12.9184	1.14e-05	0.0747	GCTGACGTCAGC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	15	27	-	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	15	27	-	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	15	27	-	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	15	27	-	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	50	62	+	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	50	62	+	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	50	62	+	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	50	62	+	13.2727	1.14e-05	0.341	GTTAAACATTTAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	50	62	+	13.2727	1.14e-05	0.341	GTTAAACATTTAC
NKX2-8	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	47	55	-	12.3846	1.14e-05	1	GCACTTGAA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	17	31	+	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	17	31	+	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	17	31	-	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	17	31	-	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
Klf12	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	84	98	+	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
Klf12	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	84	98	-	12.623	1.14e-05	0.031	GACCCCGCCCCCTGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	12	22	-	14.4894	1.14e-05	0.169	TCTGACTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	50	60	+	14.4894	1.14e-05	0.169	TCTGACTCATG
JUND	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	83	93	-	14.4894	1.14e-05	0.169	TCTGACTCATG
SP1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	5	15	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	9	19	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	28	38	+	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	24	34	-	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	24	34	-	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	36	46	+	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	36	46	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	37	47	+	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	37	47	+	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	28	38	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	32	42	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	32	42	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	34	44	-	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	34	44	-	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	42	52	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	42	52	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	61	71	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	61	71	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	63	73	+	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	53	63	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	53	63	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	71	81	+	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	69	79	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	77	87	-	14.0385	1.14e-05	0.00539	GCTCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	100	110	-	14.0385	1.14e-05	0.00539	TCCCCTCCCTC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	1	20	-	9.24771	1.14e-05	0.0382	CACCCCACCCCCACCCCTCT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	42	61	+	9.24771	1.14e-05	0.0382	CACCCCACCCCCACCCCTCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	42	61	+	9.24771	1.14e-05	0.0382	CACCCCACCCCCACCCCTCT
SRF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	44	59	-	10.5246	1.14e-05	0.332	TGACTTTATATGGCCT
SRF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	44	59	-	10.5246	1.14e-05	0.332	TGACTTTATATGGCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	9	23	-	11.4828	1.14e-05	0.0283	GACCGCCCACTCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	9	23	-	11.4828	1.14e-05	0.0283	GACCGCCCACTCGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	9	23	-	11.4828	1.14e-05	0.0283	GACCGCCCACTCGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	9	23	-	11.4828	1.14e-05	0.0283	GACCGCCCACTCGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	9	23	-	11.4828	1.14e-05	0.0283	GACCGCCCACTCGCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	67	80	+	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	90	103	+	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	12	25	-	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	35	48	-	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	35	48	-	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	35	48	-	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	35	48	-	13.0172	1.14e-05	0.0174	GGCCCCGCCCCTGA
BHLHE41	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	14.4808	1.14e-05	0.109	ATCACGTGAG
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	14.4808	1.14e-05	0.109	CGCACGTGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	14.4808	1.14e-05	0.109	CGCACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	14.4808	1.14e-05	0.109	ATCACGTGAG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	54	65	+	13.3455	1.14e-05	0.0708	GCACCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	54	65	+	13.3455	1.14e-05	0.0708	GCACCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	61	-	13.3455	1.14e-05	0.0708	GCACCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	102	113	+	13.3455	1.14e-05	0.0708	GCACCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	102	113	+	13.3455	1.14e-05	0.0708	GCACCGGAAGTG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	5	22	+	-5.48684	1.14e-05	0.0222	GGGAAGGAGGAAGGGGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	5	22	+	-5.48684	1.14e-05	0.0222	GGGAAGGAGGAAGGGGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	5	22	+	-5.48684	1.14e-05	0.0222	GGGAAGGAGGAAGGGGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	25	42	+	-5.48684	1.14e-05	0.0222	GGAAGGAAAGGCGGGAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	36	53	+	-5.48684	1.14e-05	0.0222	GGAAGGTAGGAAGGGGCG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	62	79	-	-5.48684	1.14e-05	0.0222	GGAAGGTAGGAAGGGGCG
E2F6	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	28	38	-	14.3103	1.14e-05	0.0278	GGGAGGGAACG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	45	55	-	14.3103	1.14e-05	0.0278	GGGAGGGAACG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	103	113	+	14.3103	1.14e-05	0.0278	GGGAGGGAACG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	11	-	14.0909	1.14e-05	0.033	CCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	11	-	14.0909	1.14e-05	0.033	CCCCTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	17	27	+	14.0909	1.14e-05	0.033	GCACTTCCGCT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	28	-	14.0909	1.14e-05	0.033	GCACTTCCGCT
ELK4	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	45	55	+	14.0909	1.14e-05	0.033	CCCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	70	-	14.0909	1.14e-05	0.033	CCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	70	-	14.0909	1.14e-05	0.033	CCCCTTCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	98	-	14.0909	1.14e-05	0.033	GCACTTCCGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	10	23	+	11.3191	1.14e-05	0.0959	GACGCCCCGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	52	65	+	11.3191	1.14e-05	0.0959	GACGCCCCGCTGCC
ZIC1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	6	19	-	11.3191	1.14e-05	0.0959	CGCCGCCCGCCGTG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	32	52	-	12.9184	1.14e-05	0.00676	GGAGCAGACGGCAGAAGAGAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	35	55	-	12.9184	1.14e-05	0.00676	GGGGCTAAAGGGAGGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	28	48	+	12.9184	1.14e-05	0.00676	CGAGGAGGAGGGTAAAGGAAT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	15	28	-	13.6154	1.14e-05	0.00832	GCTCCTCCCACGTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	15	28	-	13.6154	1.14e-05	0.00832	GCTCCTCCCACGTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	29	42	+	13.6154	1.14e-05	0.00832	CCTCCTCCTCCACA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	54	67	-	13.6154	1.14e-05	0.00832	GCTCCTCCCACGTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	54	67	-	13.6154	1.14e-05	0.00832	GCTCCTCCCACGTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	86	+	13.6154	1.14e-05	0.00832	CCCCCGCCTCCTGT
Klf1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	5	15	+	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	12	22	+	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	12	22	+	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	12	22	+	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	12	22	+	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	100	110	-	13.9545	1.14e-05	0.0388	AGGCACACCCA
FLI1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	14.1489	1.14e-05	0.0727	ACCGGATGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	13.8182	1.14e-05	0.0754	ACCGGAAGCA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	7	23	+	9.8	1.14e-05	0.0114	CCGACCACGCCCCGCCC
CUX1	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	61	70	-	13.3367	1.14e-05	1	TGATCGATAT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	11	22	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	11	22	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	20	31	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	20	31	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	35	-	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	41	52	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	74	-	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	74	-	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	80	91	+	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	95	-	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	104	-	13.6393	1.14e-05	0.0902	CGCCCGGAAGTG
TP73	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	36	53	+	12.7885	1.14e-05	0.574	AACAAGCCCAGGCAAGCC
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	44	58	-	13.3377	1.14e-05	0.307	AATAAATAAATAACT
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	10	24	+	14.0385	1.14e-05	0.0847	CAAGAGGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	10	24	+	14.0385	1.14e-05	0.0847	CAAGAGGCCAATGAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	81	93	-	8.59184	1.14e-05	0.233	AGGGGGATCCCTG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	81	93	-	8.59184	1.14e-05	0.233	AGGGGGATCCCTG
TBP	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	40	54	-	12.9167	1.14e-05	0.275	GTATAAATAGGCTCC
TBP	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	57	71	+	12.9167	1.14e-05	0.275	GTATAAATAGGCTCC
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	80	90	-	14.1633	1.14e-05	0.16	CTTCCTGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	80	90	-	14.1633	1.14e-05	0.16	CTTCCTGGAAT
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	100	110	-	14.1633	1.14e-05	0.16	CTTCCTGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	100	110	-	14.1633	1.14e-05	0.16	CTTCCTGGAAT
NFYA	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	38	55	-	13.0976	1.14e-05	0.0613	CTCAAGCTCATTGGCCAG
NFYA	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	60	77	+	13.0976	1.14e-05	0.0613	CTCAAGCTCATTGGCCAG
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	-	14.6	1.15e-05	0.11	AATGACTCAGC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	19	36	+	-5.5	1.15e-05	0.0222	CGGGGGACGGCAGGAAGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	79	96	-	-5.5	1.15e-05	0.0222	CGGGGGACGGCAGGAAGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	59	71	+	12.7241	1.15e-05	0.108	TAGCAGGAAGTGT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	59	71	+	12.7241	1.15e-05	0.108	TAGCAGGAAGTGT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	20	34	+	12.6066	1.15e-05	0.031	TGCCCCGCCCTTGTC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	96	110	-	12.6066	1.15e-05	0.031	TGCCCCGCCCTTGTC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	96	110	-	12.6066	1.15e-05	0.031	TGCCCCGCCCTTGTC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	18	32	-	9.75281	1.15e-05	0.163	GCCCCCCAAGATGCC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	67	81	+	9.75281	1.15e-05	0.163	GCCCCCCAAGATGCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	48	67	+	9.22936	1.15e-05	0.0382	CCCCCCCGCCCCCCCCCCGC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	15	24	+	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	15	24	+	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	12	21	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	12	21	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	26	35	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	26	35	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	30	39	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	30	39	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	30	39	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	30	39	-	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	50	59	+	14.2245	1.15e-05	0.00768	GCCACACCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	50	59	+	14.2245	1.15e-05	0.00768	GCCACACCCT
REL	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	84	93	+	13.4343	1.15e-05	0.196	CGGGTTTTCC
ZEB1	WILDTYPE__Lincrna.noflip.NA__chr11:62620470..62620584,-__182.1.0.0	36	44	-	14.5818	1.15e-05	0.267	ACTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	92	100	-	14.5818	1.15e-05	0.267	ACTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	92	100	-	14.5818	1.15e-05	0.267	ACTCACCTG
PAX9	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	30	46	-	7.69091	1.15e-05	0.456	AGACCCGCTTCATTGAC
PAX9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	65	81	-	7.69091	1.15e-05	0.456	AGACCCGCTTCATTGAC
PAX9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	65	81	-	7.69091	1.15e-05	0.456	AGACCCGCTTCATTGAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	12	22	-	13.374	1.15e-05	0.00936	GACACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	12	22	-	13.374	1.15e-05	0.00936	GACACGCCCCT
MEF2B	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	+	12.0909	1.15e-05	0.291	GCTAATTATAGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	12	26	-	13.7069	1.15e-05	0.0048	GCTCCGCCCCAGCAC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	12	26	-	13.7069	1.15e-05	0.0048	GCTCCGCCCCAGCAC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	37	51	-	13.7069	1.15e-05	0.0048	CGCCCTCCTCCCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	39	53	-	13.7069	1.15e-05	0.0048	TTCCCTCCCCTTCGG
SP2	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	67	+	13.7069	1.15e-05	0.0048	ACCCCACCCCCCTCT
SP2	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	62	76	+	13.7069	1.15e-05	0.0048	TTCCCTCCCCTTCGG
SP2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	64	78	+	13.7069	1.15e-05	0.0048	CGCCCTCCTCCCTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	92	106	+	13.7069	1.15e-05	0.0048	ATCCCGCCCTCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	92	106	+	13.7069	1.15e-05	0.0048	ATCCCGCCCTCCAGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	-	13.8966	1.15e-05	0.0537	TGCCCAGGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	-	13.8966	1.15e-05	0.0537	TGCCCAGGGGGCC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr11:118436602..118436716,-__1351.1.0.0	29	43	+	13.6364	1.15e-05	0.0548	GTCTCACGAGAGTGG
TCF7L2	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	82	95	-	13.9455	1.15e-05	1	CAAGTTCAAAGAAT
IRF8	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	24	37	-	5.61818	1.15e-05	0.32	TGGAAACCGAAAAC
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	78	91	+	5.61818	1.15e-05	0.32	TGGAAACCGAAAAC
FOXA1	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	34	48	+	14.0408	1.15e-05	0.511	TTTCTGTTTGCTTAG
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	91	105	-	12.3571	1.15e-05	0.0969	CCCCCCCCCCCGTGT
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	24	+	12.3571	1.15e-05	0.0969	CCCCCCCCCCCGTGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	24	+	12.3571	1.15e-05	0.0969	CCCCCCCCCCCGTGT
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	6	16	-	14.2727	1.15e-05	0.766	GTGTAAACAAG
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	6	16	-	14.2727	1.15e-05	0.766	GTGTAAACAAG
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	63	73	+	14.2727	1.15e-05	0.766	GTGTAAACAAG
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	63	73	+	14.2727	1.15e-05	0.766	GTGTAAACAAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	69	79	+	14.551	1.15e-05	0.115	GAATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	100	110	+	14.551	1.15e-05	0.115	GAATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	100	110	+	14.551	1.15e-05	0.115	GAATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	4	14	-	14.551	1.15e-05	0.115	GAATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	4	14	-	14.551	1.15e-05	0.115	GAATGAGTCAT
JUNB	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	36	46	-	14.551	1.15e-05	0.115	GAATGAGTCAT
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	23	36	+	13	1.15e-05	0.0174	CGTCCCGCCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	27	40	+	13	1.15e-05	0.0174	GGCTCCGCCCACCG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	27	40	+	13	1.15e-05	0.0174	GGCTCCGCCCACCG
KLF14	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	32	45	+	13	1.15e-05	0.0174	CGCCCCGCCCCCGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	50	63	+	13	1.15e-05	0.0174	CGTCCCGCCCACCC
KLF14	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	101	114	+	13	1.15e-05	0.0174	GGCTCCGCCCACCG
KLF14	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	1	14	-	13	1.15e-05	0.0174	GGCTCCGCCCACCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	45	58	-	13	1.15e-05	0.0174	CGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	45	58	-	13	1.15e-05	0.0174	CGCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	56	69	-	13	1.15e-05	0.0174	GGCTGCGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	56	69	-	13	1.15e-05	0.0174	GGCTGCGCCCACCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	75	88	-	13	1.15e-05	0.0174	GGCTCCGCCCACCG
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	+	13.5102	1.15e-05	0.0857	AGCCTGAAGGCA
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	-	13.5102	1.15e-05	0.0857	AGCCTGAAGGCA
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	71	81	+	13.7653	1.15e-05	0.23	GAGAACGTGGT
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	71	81	+	13.7653	1.15e-05	0.23	GAGAACGTGGT
MAFG	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	10	30	+	13.0408	1.15e-05	0.704	ACGCTGCTGCGTCAGCGCCTC
MAFG	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	85	105	-	13.0408	1.15e-05	0.704	ACGCTGCTGCGTCAGCGCCTC
Myog	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	23	33	-	14.2449	1.15e-05	0.0894	AGCAGCTGCCC
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	92	+	14.2449	1.15e-05	0.0894	AGCAGCTGCCC
Myog	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	92	+	14.2449	1.15e-05	0.0894	AGCAGCTGCCC
INSM1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	1	12	+	13.9286	1.15e-05	0.122	GGCTTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	69	80	+	13.9286	1.15e-05	0.122	GGCTTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	69	80	+	13.9286	1.15e-05	0.122	GGCTTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	103	114	-	13.9286	1.15e-05	0.122	GGCTTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	103	114	-	13.9286	1.15e-05	0.122	GGCTTGGGGGCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	18	37	-	9.22018	1.15e-05	0.0382	CCCTCCACCACCATCCCCCA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	18	37	-	9.22018	1.15e-05	0.0382	CCCTCCACCACCATCCCCCA
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	18	37	-	9.22018	1.15e-05	0.0382	CCCTCCACCACCATCCCCCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	13.931	1.15e-05	0.076	ACCGGATATG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	13.931	1.15e-05	0.076	ACCGGATATG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	13.6383	1.15e-05	0.0373	GCCGGAAGCG
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	19	-	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	33	+	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	33	+	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	33	+	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	33	+	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	33	+	13.8276	1.15e-05	0.0907	CGCAGGTGCG
NHLH1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	91	-	13.8276	1.15e-05	0.0907	CGCAGGTGCG
MTF1	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	62	75	-	10.9878	1.15e-05	0.5	AGTGCAGACGGCGC
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	82	98	-	13.2653	1.15e-05	0.338	GGGTCATCAGAAGCACA
TFEC	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	-	13.2195	1.15e-05	0.129	ATCACATGAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	+	13.2195	1.15e-05	0.129	ATCACATGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	+	13.2195	1.15e-05	0.129	ATCACATGAT
EGR2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	10	20	+	13.1897	1.15e-05	0.0586	TCGCCCCCGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	59	79	-	12.898	1.15e-05	0.00681	GAAGGGGGCGGGTGAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	59	79	-	12.898	1.15e-05	0.00681	GAAGGGGGCGGGTGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	59	79	-	12.898	1.15e-05	0.00681	GAAGGGGGCGGGTGAGGGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	9	29	+	12.898	1.15e-05	0.00681	AGGGGACAGAGGGAAAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	32	52	+	12.898	1.15e-05	0.00681	GGAGGGGGGGGGAGAAGGCGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	32	52	+	12.898	1.15e-05	0.00681	GGAGGGGGGGGGAGAAGGCGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	62	82	+	12.898	1.15e-05	0.00681	AATGGAAGAGGAAGGGGAGAT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	59	72	+	13.5962	1.15e-05	0.00841	GCGCCTCCCACGTC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	81	94	-	13.5962	1.15e-05	0.00841	GCGCCTCCCACGTC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	25	38	+	7.51515	1.15e-05	0.108	CCCTGACGTCAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	25	38	+	7.51515	1.15e-05	0.108	CCCTGACGTCAGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	6	22	-	9.76364	1.16e-05	0.0115	CAGGCCACGCCTCAGTA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	27	43	+	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	27	43	+	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	27	43	+	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	27	43	+	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	25	41	-	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	25	41	-	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
SP4	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	54	70	-	9.76364	1.16e-05	0.0115	CCAGCCCCGCCCCGCGC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	-	13.6327	1.16e-05	0.169	TATGAGTCATC
NRF1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	23	33	-	13.5636	1.16e-05	0.00718	GCACGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	29	39	-	13.5636	1.16e-05	0.00718	GAGCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	29	39	-	13.5636	1.16e-05	0.00718	GAGCCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	82	92	+	13.5636	1.16e-05	0.00718	GCACGTGCGCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	24	43	-	9.20183	1.16e-05	0.0382	CCCCCGCCCAACCTCCGCCC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	90	+	9.20183	1.16e-05	0.0382	CCCCCGCCCAACCTCCGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	54	68	+	13.6897	1.16e-05	0.00483	GTCCCTCCCTTTCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	70	84	-	13.6897	1.16e-05	0.00483	AGTCCGCCCCCGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	70	84	-	13.6897	1.16e-05	0.00483	AGTCCGCCCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	70	84	-	13.6897	1.16e-05	0.00483	AGTCCGCCCCCGGCC
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	25	36	-	14.0787	1.16e-05	0.99	TGACCATCTGTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	69	82	-	14.0152	1.16e-05	0.023	CCCGCTAGGGCCTG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	+	13.6545	1.16e-05	0.0397	AGCCCCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	+	13.6545	1.16e-05	0.0397	AGCCCCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	+	13.6545	1.16e-05	0.0397	AGCCCCCGGCG
MLX	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	13.8286	1.16e-05	0.188	ATCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	13.8286	1.16e-05	0.188	ATCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	13.8286	1.16e-05	0.188	ATCACGTGGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	14	+	13.6316	1.16e-05	0.0158	TCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	23	+	13.6316	1.16e-05	0.0158	TCCCCGCCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	23	+	13.6316	1.16e-05	0.0158	TCCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	23	+	13.6316	1.16e-05	0.0158	TCCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	23	+	13.6316	1.16e-05	0.0158	TCCCCGCCCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	5	16	-	13.6316	1.16e-05	0.0158	GCCCCGCCCGCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	28	39	+	13.6316	1.16e-05	0.0158	GCCCCGCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	28	39	+	13.6316	1.16e-05	0.0158	GCCCCGCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	88	99	+	13.6316	1.16e-05	0.0158	GCCCCGCCCGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	88	99	+	13.6316	1.16e-05	0.0158	GCCCCGCCCGCT
KLF16	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	36	46	-	13.7241	1.16e-05	0.01	ACCACTCCCAC
ZIC4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	18	32	+	13.4545	1.16e-05	0.0974	CCCGCCCCGCGGCGC
ZIC4	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	12	26	-	13.4545	1.16e-05	0.0974	CCCGCCCCGCGGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	89	103	+	13.4545	1.16e-05	0.0974	CCCGCCCCGCGGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	83	97	-	13.4545	1.16e-05	0.0974	CCCGCCCCGCGGCGC
EGR4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	39	54	-	13.3273	1.16e-05	0.0313	CGCCGCCCCCGCGCGC
EGR4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	61	76	+	13.3273	1.16e-05	0.0313	CGCCGCCCCCGCGCGC
DBP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	-	14.2642	1.16e-05	1	AATTACGTAAGG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	35	+	14	1.16e-05	0.00548	ACCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	35	+	14	1.16e-05	0.00548	ACCCCGCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	21	31	-	14	1.16e-05	0.00548	ACCCCGCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	25	35	-	14	1.16e-05	0.00548	ACCCCGCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	76	+	14	1.16e-05	0.00548	ACCCCGCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	94	+	14	1.16e-05	0.00548	ACCCCGCCCTC
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	25	39	+	13.3182	1.16e-05	0.175	AATGTTTCAGTTCCC
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	76	90	-	13.3182	1.16e-05	0.175	AATGTTTCAGTTCCC
Npas2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	13.8361	1.16e-05	0.333	CCCACGTGTC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	13.8361	1.16e-05	0.333	CCCACGTGTC
Npas2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	13.8361	1.16e-05	0.333	CCCACGTGTC
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	-	10.9143	1.16e-05	0.0955	GGGCGCCATAGCAACG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	-	10.9143	1.16e-05	0.0955	GGGCGCCATAGCAACG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	-	10.9143	1.16e-05	0.0955	GGGCGCCATAGCAACG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	-	10.9143	1.16e-05	0.0955	GGGCGCCATAGCAACG
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	-	10.9143	1.16e-05	0.0955	GGGCGCCATAGCAACG
SP4	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	1	17	+	9.74545	1.16e-05	0.0115	GCCGCCCCGCCCCTGCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	98	114	-	9.74545	1.16e-05	0.0115	GCCGCCCCGCCCCTGCA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	98	114	-	9.74545	1.16e-05	0.0115	GCCGCCCCGCCCCTGCA
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	42	55	-	13.6613	1.16e-05	0.233	CTTCTTAGAAAGTC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	42	55	-	13.6613	1.16e-05	0.233	CTTCTTAGAAAGTC
CTCF	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	8	26	-	12.4918	1.16e-05	0.0676	CGGCCGGCGGGAGGCGGGA
CTCF	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	89	107	+	12.4918	1.16e-05	0.0676	CGGCCGGCGGGAGGCGGGA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	67	80	+	7.16364	1.16e-05	0.343	GGTGTGAAGGGTCA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	-	14.5532	1.16e-05	0.169	TATGAGTCATC
RREB1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	31	50	-	9.18349	1.16e-05	0.0382	CCACACCACTCCCACTTCGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	32	43	-	13.6182	1.17e-05	0.0548	AGCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	32	43	-	13.6182	1.17e-05	0.0548	AGCCCGGGGGCG
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	51	65	+	13.2727	1.17e-05	0.176	CTGAGTGAGTCAGCT
BATF::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	26	36	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	26	36	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	35	45	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	35	45	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	35	45	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	35	45	-	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	27	37	+	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	82	92	+	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	82	92	+	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	82	92	+	14.2885	1.17e-05	0.172	AGGATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	82	92	+	14.2885	1.17e-05	0.172	AGGATGAGTCA
HSF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	60	72	+	11.918	1.17e-05	1	CTCGGGAACGTTC
HSF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	60	72	+	11.918	1.17e-05	1	CTCGGGAACGTTC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	7	17	-	14.0328	1.17e-05	0.0298	GCGGAAGCGAC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	7	17	-	14.0328	1.17e-05	0.0298	GCGGAAGCGAC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	10	20	-	14.0328	1.17e-05	0.0298	CAGGAAGTGGC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	24	34	+	14.0328	1.17e-05	0.0298	CCGGAAGTCAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	59	69	+	14.0328	1.17e-05	0.0298	CCGGAAGTCAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	59	69	+	14.0328	1.17e-05	0.0298	CCGGAAGTCAA
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	63	73	-	14.0328	1.17e-05	0.0298	CAGGAAGTGGC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	85	95	+	14.0328	1.17e-05	0.0298	CAGGAAGTGGC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	98	108	+	14.0328	1.17e-05	0.0298	GCGGAAGCGAC
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	45	54	-	13.7885	1.17e-05	0.439	CAACCACAAA
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	20	29	+	13.7885	1.17e-05	0.439	CAACCACAAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	32	41	-	12.697	1.17e-05	0.103	GGAGGGGGAC
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	44	53	-	12.697	1.17e-05	0.103	GGAGGGGGAC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	95	104	-	12.697	1.17e-05	0.103	GTATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	95	104	-	12.697	1.17e-05	0.103	GTATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	95	104	-	12.697	1.17e-05	0.103	GTATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	95	104	-	12.697	1.17e-05	0.103	GTATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	95	104	-	12.697	1.17e-05	0.103	GTATGGGGAA
IRF9	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	57	71	-	4.65455	1.17e-05	0.38	AATGAAAGTGATAGT
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	13.8462	1.17e-05	0.0945	CCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	13.8462	1.17e-05	0.0945	CCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	13.8462	1.17e-05	0.0945	CCCACGTGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	13.8462	1.17e-05	0.0945	CCCACGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	13.8462	1.17e-05	0.0945	CCCACGTGAC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	26	39	+	13.5769	1.17e-05	0.00845	CTTCCGCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	15	28	-	13.5769	1.17e-05	0.00845	CCGCTGCCCACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	84	+	13.5769	1.17e-05	0.00845	GCCCCACCCACTGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	84	+	13.5769	1.17e-05	0.00845	GCCCCACCCACTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	84	+	13.5769	1.17e-05	0.00845	GCCCCACCCACTGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	84	+	13.5769	1.17e-05	0.00845	GCCCCACCCACTGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	85	98	+	13.5769	1.17e-05	0.00845	CCGCTGCCCACTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	76	89	-	13.5769	1.17e-05	0.00845	CTTCCGCCGCCGCT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	54	+	13.4182	1.17e-05	0.0992	CCTGACGTCATA
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	54	+	13.4182	1.17e-05	0.0992	CCTGACGTCATA
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	54	+	13.4182	1.17e-05	0.0992	CCTGACGTCATA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	30	50	-	12.8776	1.17e-05	0.00683	GGAGGCCAGAGGAAAAGGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	30	50	-	12.8776	1.17e-05	0.00683	GGAGGCCAGAGGAAAAGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	30	50	-	12.8776	1.17e-05	0.00683	GGAGGCCAGAGGAAAAGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	30	50	-	12.8776	1.17e-05	0.00683	GGAGGCCAGAGGAAAAGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	31	51	-	12.8776	1.17e-05	0.00683	GGTGCTGGTGGAGGAGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	89	-	12.8776	1.17e-05	0.00683	TGGTGAAGATGGGGGAGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	89	-	12.8776	1.17e-05	0.00683	TGGTGAAGATGGGGGAGGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	73	93	-	12.8776	1.17e-05	0.00683	GGAGGTGGAGAATCAGAAGGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	89	109	-	12.8776	1.17e-05	0.00683	GGATGAAGTGGGGAAGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	89	109	-	12.8776	1.17e-05	0.00683	GGATGAAGTGGGGAAGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	89	109	-	12.8776	1.17e-05	0.00683	GGATGAAGTGGGGAAGTGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	89	109	-	12.8776	1.17e-05	0.00683	GGATGAAGTGGGGAAGTGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	23	43	+	12.8776	1.17e-05	0.00683	TGGTGAGGGGAGGAGGAGGAG
Mecom	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	34	47	+	13.1124	1.17e-05	1	ATGACAAGACAGAA
Mecom	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	68	81	-	13.1124	1.17e-05	1	ATGACAAGACAGAA
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	13.4545	1.17e-05	0.247	CCCACGTGCT
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	13.4545	1.17e-05	0.247	CCCACGTGCT
MNT	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	13.4545	1.17e-05	0.247	ACCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	13.4545	1.17e-05	0.247	ACCACGTGAC
MNT	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	13.4545	1.17e-05	0.247	CCCACGTGCT
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	31	45	+	13.0714	1.17e-05	0.0808	CGAGGGGGGGGGGCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	29	43	-	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	29	43	-	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	29	43	-	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	29	43	-	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	82	96	-	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	19	33	+	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
EGR3	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	72	86	+	11.4138	1.17e-05	0.0283	GCCCGCCCCCACGCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	16	26	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	16	26	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	26	36	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	26	36	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	28	38	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	52	62	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	64	74	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	64	74	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	64	74	+	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	30	40	-	13.9394	1.17e-05	0.0388	AGCCCCGCCCT
TFAP4	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	101	+	14.1273	1.17e-05	0.606	AACAGCTGAG
TFAP4	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	14	23	-	14.1273	1.17e-05	0.606	AACAGCTGAG
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	101	110	-	12.1951	1.17e-05	0.34	TCAATCACTG
INSM1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	63	74	+	13.8878	1.17e-05	0.122	TGCTAGGGGCCG
INSM1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	41	52	-	13.8878	1.17e-05	0.122	TGCTAGGGGCCG
Hes2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	6	18	-	12.5714	1.17e-05	0.377	CCTGGACACGTGA
Hes2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	97	109	+	12.5714	1.17e-05	0.377	CCTGGACACGTGA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	95	107	-	14.2041	1.17e-05	0.109	TGCAGCTGCTAGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	94	108	-	12.3143	1.17e-05	0.0969	CGCACCCCGCCGAGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	7	21	+	12.3143	1.17e-05	0.0969	CGCACCCCGCCGAGC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	75	94	+	9.16514	1.17e-05	0.0382	TCCCCAACCACAAGCCACAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	7	21	+	13.6724	1.17e-05	0.00487	CCACCGCCTCCGCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	7	21	+	13.6724	1.17e-05	0.00487	CCACCGCCTCCGCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	72	86	+	13.6724	1.17e-05	0.00487	ACCCCTCCTCCCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	59	73	-	13.6724	1.17e-05	0.00487	ACTCCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	59	73	-	13.6724	1.17e-05	0.00487	ACTCCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	59	73	-	13.6724	1.17e-05	0.00487	ACTCCGCCCCGCCCC
NR2F1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	31	43	-	14.0204	1.17e-05	0.326	CAAAGGTCAGTTG
NR2F1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	72	84	+	14.0204	1.17e-05	0.326	CAAAGGTCAGTTG
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	55	69	-	13.303	1.17e-05	0.175	GGAGTTTCTTTTTTT
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	67	80	+	13.5211	1.17e-05	0.129	CGGAACCGGAAGTA
SPIC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	67	80	+	13.5211	1.17e-05	0.129	CGGAACCGGAAGTA
SPIC	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	48	-	13.5211	1.17e-05	0.129	CGGAACCGGAAGTA
SP1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	45	+	13.9808	1.17e-05	0.00553	CCCCCTCCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	34	44	-	13.9808	1.17e-05	0.00553	CCCCCTCCCAC
NFYB	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	29	43	-	14	1.17e-05	0.0847	AGATTAGCCAATCAA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	66	-	13.4364	1.17e-05	0.0974	GAACGCCCGCGGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	66	-	13.4364	1.17e-05	0.0974	GAACGCCCGCGGGGA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	73	83	-	14.4694	1.17e-05	0.115	AAGTGACTCAG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	+	13.9231	1.17e-05	0.0588	AGCCTGGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	+	13.9231	1.17e-05	0.0588	AGCCTGGGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	-	13.9231	1.17e-05	0.0588	AGCCTGGGGCT
EGR4	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	35	50	+	13.3091	1.17e-05	0.0313	TGACGCCCACCCCCGG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	54	69	-	13.3091	1.17e-05	0.0313	CCCCGCCCCCGCCGCG
EGR4	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	65	80	-	13.3091	1.17e-05	0.0313	TGACGCCCACCCCCGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	12	23	+	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	7	18	-	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	7	18	-	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	42	53	+	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	48	59	+	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	56	67	+	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	56	67	-	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	62	73	-	13.6184	1.18e-05	0.0158	CCCCCCCCCCCT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	-	14.5455	1.18e-05	0.112	TGTGACTCATA
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	13.7414	1.18e-05	0.188	GACACGTGAC
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	13.7414	1.18e-05	0.188	GACACGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	13.7414	1.18e-05	0.188	GACACGTGAC
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	13.7414	1.18e-05	0.188	GACACGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	13.7414	1.18e-05	0.188	GACACGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	13.7414	1.18e-05	0.188	GACACGTGAC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	33	45	+	8.4898	1.18e-05	0.233	TGGGGTTCCCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	33	45	+	8.4898	1.18e-05	0.233	TGGGGTTCCCCCT
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	20	33	+	7.4697	1.18e-05	0.108	AGCTGACGTCACAG
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	20	33	+	7.4697	1.18e-05	0.108	AGCTGACGTCACAG
Vdr	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	91	106	+	9.67213	1.18e-05	0.544	GAGTGCAGCGGGGTTA
Vdr	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	91	106	+	9.67213	1.18e-05	0.544	GAGTGCAGCGGGGTTA
FOXH1	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	85	95	-	14.1538	1.18e-05	1	CCTAATCCACA
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	35	46	-	13.7869	1.18e-05	0.334	CTGGGCGCCATA
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	35	46	-	13.7869	1.18e-05	0.334	CTGGGCGCCATA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	35	46	-	13.7869	1.18e-05	0.334	CTGGGCGCCATA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	35	46	-	13.7869	1.18e-05	0.334	CTGGGCGCCATA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	35	46	-	13.7869	1.18e-05	0.334	CTGGGCGCCATA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	65	79	+	13.0571	1.18e-05	0.0808	TCAGGGCAGGGGTGA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	-	13.7541	1.18e-05	0.0517	ACCCCTGCGGGGA
TP63	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	96	113	-	5.82759	1.18e-05	0.559	GTCATGCTCCGTCATGTG
TP63	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	96	113	-	5.82759	1.18e-05	0.559	GTCATGCTCCGTCATGTG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	14	33	-	9.14679	1.18e-05	0.0382	CCACCACCATCCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	14	33	-	9.14679	1.18e-05	0.0382	CCACCACCATCCCCCACCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	14	33	-	9.14679	1.18e-05	0.0382	CCACCACCATCCCCCACCCC
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	13	26	+	12.4714	1.18e-05	0.0898	CAGTGACGTCAGAG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	13	26	+	12.4714	1.18e-05	0.0898	CAGTGACGTCAGAG
ATF7	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	94	107	+	12.4714	1.18e-05	0.0898	CAGTGACGTCAGAG
ATF7	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	8	21	-	12.4714	1.18e-05	0.0898	CAGTGACGTCAGAG
ATF7	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	89	102	-	12.4714	1.18e-05	0.0898	CAGTGACGTCAGAG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ELK3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ELK3	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.6552	1.18e-05	0.0544	ACCGGAAGCT
ZIC3	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	55	69	-	12.3	1.18e-05	0.0969	GGCTTCCCGCGGTGA
ZIC3	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	46	60	+	12.3	1.18e-05	0.0969	GGCTTCCCGCGGTGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	26	43	+	-5.59211	1.18e-05	0.0227	GGAAGGATGTGGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	17	34	-	-5.59211	1.18e-05	0.0227	GCGGGGAAGGAAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	17	34	-	-5.59211	1.18e-05	0.0227	GCGGGGAAGGAAGCAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	72	89	-	-5.59211	1.18e-05	0.0227	GGAAGGATGTGGGGAAGG
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	42	62	+	12.8871	1.18e-05	0.12	TTTTGCTTTCACTTTAACAAA
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	42	62	+	12.8871	1.18e-05	0.12	TTTTGCTTTCACTTTAACAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	36	56	-	12.8571	1.18e-05	0.00688	GGTGGAGGGCGACAGGAGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	36	56	-	12.8571	1.18e-05	0.00688	GGTGGAGGGCGACAGGAGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	74	94	-	12.8571	1.18e-05	0.00688	GAAGGCGAGGAGGAGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	74	94	-	12.8571	1.18e-05	0.00688	GAAGGCGAGGAGGAGGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	80	100	-	12.8571	1.18e-05	0.00688	GGAGGCGGGGCCTGGGAGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	15	35	+	12.8571	1.18e-05	0.00688	GGAGGCGGGGCCTGGGAGGGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	85	98	+	13.5577	1.18e-05	0.00853	CCTTCGCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	90	103	+	13.5577	1.18e-05	0.00853	GTCCCGCCCTCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	90	103	+	13.5577	1.18e-05	0.00853	GTCCCGCCCTCGCA
INSM1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	22	33	-	13.8776	1.18e-05	0.122	GGCCAGGGGTTG
Znf423	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	4	18	+	9.68539	1.18e-05	0.163	GGAACTCAGGGTGTC
Znf423	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	41	55	+	9.68539	1.18e-05	0.163	GGAACTCAGGGTGTC
Znf423	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	60	74	-	9.68539	1.18e-05	0.163	GGAACTCAGGGTGTC
Znf423	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	97	111	-	9.68539	1.18e-05	0.163	GGAACTCAGGGTGTC
NRL	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	90	100	-	12.2885	1.18e-05	0.648	AGTCTGCTGAC
SP4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	29	45	+	9.69091	1.18e-05	0.0117	ACGGCCCCGCCTCCTGG
ATF7	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	36	49	+	12.4571	1.18e-05	0.0898	TGGTGACGTCAGAG
ATF7	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	66	79	-	12.4571	1.18e-05	0.0898	TGGTGACGTCAGAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	70	83	+	12.931	1.19e-05	0.0179	GGGCCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	70	83	+	12.931	1.19e-05	0.0179	GGGCCCGCCCCTTC
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	10	22	-	13.5	1.19e-05	1	TGTATGCAAATGA
Barhl1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	-	10.3774	1.19e-05	1	CCTAATTGGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	76	86	+	13.8909	1.19e-05	0.721	GGCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	76	86	+	13.8909	1.19e-05	0.721	GGCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	76	86	+	13.8909	1.19e-05	0.721	GGCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	76	86	+	13.8909	1.19e-05	0.721	GGCCACTCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	10	24	-	13.6552	1.19e-05	0.00492	CCTCCGCCCCGCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	10	24	-	13.6552	1.19e-05	0.00492	CCTCCGCCCCGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	10	24	-	13.6552	1.19e-05	0.00492	CCTCCGCCCCGCCGC
SP2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	28	42	+	13.6552	1.19e-05	0.00492	GCTCCTCCTCCGCCT
SP2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	73	87	-	13.6552	1.19e-05	0.00492	GCTCCTCCTCCGCCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	60	77	+	-5.60526	1.19e-05	0.0227	GGAGGGAAGTGAGGAACA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	65	82	+	-5.60526	1.19e-05	0.0227	GGGGGAAGACAAGGAAGG
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	82	+	13.4	1.19e-05	0.0992	GATGACGTCAGA
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	82	+	13.4	1.19e-05	0.0992	GATGACGTCAGA
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	-	13.4	1.19e-05	0.0992	GGTTACGTCACC
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	-	13.4	1.19e-05	0.0992	GGTTACGTCACC
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	-	13.4	1.19e-05	0.0992	GGTTACGTCACC
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	-	13.4	1.19e-05	0.0992	GGTTACGTCACC
KLF5	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	15	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	16	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	16	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	1	10	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	11	20	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	11	20	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	5	14	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	27	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	27	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	29	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	11	20	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	30	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	30	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	30	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	30	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	24	33	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	34	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	34	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	39	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	32	41	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	25	34	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	30	39	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	30	39	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	31	40	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	31	40	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	50	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	50	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	32	41	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	34	43	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	34	43	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	55	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	38	47	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	57	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	40	49	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	59	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	41	50	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	59	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	63	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	52	61	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	71	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	65	74	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	56	65	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	75	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	57	66	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	57	66	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	58	67	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	79	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	81	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	65	74	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	76	85	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	82	91	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	104	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	101	110	+	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	99	108	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	100	109	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	105	114	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	105	114	-	14.2041	1.19e-05	0.00768	CCCCCTCCCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	+	14.1	1.19e-05	0.148	AACAGCTGTC
Pou2f3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	4	19	+	13.878	1.19e-05	0.537	GCGTATTCAAATGAGG
Pou2f3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	4	19	+	13.878	1.19e-05	0.537	GCGTATTCAAATGAGG
Pou2f3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	4	19	+	13.878	1.19e-05	0.537	GCGTATTCAAATGAGG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	26	39	+	14.1731	1.19e-05	0.135	ACAGTATGAGTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	31	44	-	14.1731	1.19e-05	0.135	ACAGTATGAGTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	31	44	-	14.1731	1.19e-05	0.135	ACAGTATGAGTCAT
ATF7	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	32	45	+	12.4429	1.19e-05	0.0898	GTCTGACGTCATTC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	25	38	-	7.43939	1.19e-05	0.108	CGCTGACGTCAGGG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	25	38	-	7.43939	1.19e-05	0.108	CGCTGACGTCAGGG
INSM1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	43	54	+	13.8673	1.19e-05	0.122	AGGCAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	61	72	-	13.8673	1.19e-05	0.122	AGGCAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	61	72	-	13.8673	1.19e-05	0.122	AGGCAGGGGGCG
Klf12	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	28	42	+	12.5246	1.19e-05	0.032	GGCCACACCCCCGGG
YY1	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	13	24	+	13.7885	1.19e-05	0.0841	GAAAATGGCCGA
Rfx1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	101	114	+	13.3621	1.19e-05	0.0949	GCTGCTTTGGCAAC
Rfx1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	1	14	-	13.3621	1.19e-05	0.0949	GCTGCTTTGGCAAC
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	81	97	-	6.62121	1.19e-05	0.3	AAGGTTATCCTGACATC
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	81	97	-	6.62121	1.19e-05	0.3	AAGGTTATCCTGACATC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	-	13.4796	1.19e-05	0.0857	TCCCCGAGGGCG
SP4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	26	42	-	9.67273	1.19e-05	0.0117	GCTGCCCCGCCCCACTC
SP4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	73	89	+	9.67273	1.19e-05	0.0117	GCTGCCCCGCCCCACTC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	+	11.5	1.19e-05	0.882	GTGGACAGCGTGTACCG
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	+	11.5	1.19e-05	0.882	GTGGACAGCGTGTACCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	+	13.7377	1.19e-05	0.0517	TGCCGGGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	+	13.7377	1.19e-05	0.0517	TGCCGGGGGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	+	13.7377	1.19e-05	0.0517	TGCCCCTGTGGCA
IRF1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	69	89	-	12.871	1.19e-05	0.12	ACTCAGTTTCAATTTCCTCCC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	20	34	+	13.0286	1.19e-05	0.0808	AAGGTGCAGAGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	20	34	+	13.0286	1.19e-05	0.0808	AAGGTGCAGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	20	34	+	13.0286	1.19e-05	0.0808	AAGGTGCAGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	26	40	+	13.0286	1.19e-05	0.0808	CAGGGGGAGAGGCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	26	40	+	13.0286	1.19e-05	0.0808	CAGGGGGAGAGGCCG
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	13.6727	1.19e-05	0.189	ATCACGTGAG
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	13.6727	1.19e-05	0.189	ATCACGTGAG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	20	38	-	12.4426	1.19e-05	0.0688	GGAGCAGGAGGGGGCGGAG
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	65	79	-	13.2973	1.19e-05	0.138	GGGGGGGAAGGGGGA
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	36	50	+	13.2973	1.19e-05	0.138	GGGGGGGAAGGGGGA
RFX4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	+	13.2424	1.19e-05	0.0978	TGGCGCCATGGCGACG
RFX4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	-	13.2424	1.19e-05	0.0978	TGGCGCCATGGCGACG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	91	103	-	13.8852	1.19e-05	0.0626	GGCCTTCGGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	+	14.0182	1.19e-05	0.063	AGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	+	14.0182	1.19e-05	0.063	AGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	+	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	-	14.0182	1.19e-05	0.063	CGCCTCGGGCG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	31	44	-	9.40909	1.19e-05	0.379	GCCCCCCCACCTCG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	13	23	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	13	23	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	28	38	-	13.9423	1.2e-05	0.0056	GCCCCGCCTCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	38	48	+	13.9423	1.2e-05	0.0056	GCCCCGCCTCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	38	48	+	13.9423	1.2e-05	0.0056	GCCCCGCCTCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	62	72	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	62	72	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	62	72	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	62	72	-	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
SP1	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	92	102	+	13.9423	1.2e-05	0.0056	GTCCCGCCCCA
Zfx	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	38	51	+	13.9697	1.2e-05	0.0235	GTGCGCCCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	64	77	-	13.9697	1.2e-05	0.0235	GTGCGCCCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	64	77	-	13.9697	1.2e-05	0.0235	GTGCGCCCGGCCTG
POU5F1B	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	5	13	-	13.4956	1.2e-05	0.889	TATGCTAAT
POU3F4	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	5	13	-	15.102	1.2e-05	0.889	TATGCTAAT
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	27	44	+	13.0122	1.2e-05	0.0635	AGGTTTCTTATTGGTGAG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	5	15	-	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	5	15	-	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	37	47	-	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	58	68	-	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	71	81	-	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	34	44	+	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	47	57	+	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	68	78	+	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	99	109	+	14.2692	1.2e-05	0.172	TGAATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	99	109	+	14.2692	1.2e-05	0.172	TGAATGAGTCA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	13.3636	1.2e-05	0.0697	TCCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	13.3636	1.2e-05	0.0697	TCCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	13.3636	1.2e-05	0.0697	TCCGGAAGTA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	13.3636	1.2e-05	0.0697	TCCGGAAGTA
ETV3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.4507	1.2e-05	0.07	GCCGGAAGTA
ETV3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.4507	1.2e-05	0.07	GCCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.4507	1.2e-05	0.07	GCCGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.4507	1.2e-05	0.07	GCCGGAAGTA
ETV3	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.4507	1.2e-05	0.07	GCCGGAAGTA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	46	66	-	12.8367	1.2e-05	0.00694	GGGGGGGGGGGCGGGGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	46	66	-	12.8367	1.2e-05	0.00694	GGGGGGGGGGGCGGGGGGGGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	88	108	-	12.8367	1.2e-05	0.00694	AGGGGCGGAAAGAGCAGAGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	7	27	+	12.8367	1.2e-05	0.00694	AGGGGCGGAAAGAGCAGAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	16	36	+	12.8367	1.2e-05	0.00694	TGGGGAGGGGAAGTGGGTGAA
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	43	53	-	13.9184	1.2e-05	0.0785	GTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	43	53	-	13.9184	1.2e-05	0.0785	GTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	29	+	13.9184	1.2e-05	0.0785	GTCATGTGATC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	29	+	13.9184	1.2e-05	0.0785	GTCATGTGATC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	52	62	+	13.4909	1.2e-05	0.00739	ACGCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	52	62	+	13.4909	1.2e-05	0.00739	ACGCCCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	52	62	+	13.4909	1.2e-05	0.00739	ACGCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	52	62	+	13.4909	1.2e-05	0.00739	ACGCCCGCGCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	21	31	-	13.9091	1.2e-05	0.0388	GACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	21	31	-	13.9091	1.2e-05	0.0388	GACCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	21	31	-	13.9091	1.2e-05	0.0388	GACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	21	31	-	13.9091	1.2e-05	0.0388	GACCCCGCCCA
SP4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	51	67	+	9.65455	1.2e-05	0.0118	CCCGACCCGCCCACCTG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	60	73	-	11.1915	1.2e-05	0.0959	TCCCTCCCGCCGCG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	20	34	-	13.5606	1.2e-05	0.0548	GTATCGCGAGATCAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	81	95	+	13.5606	1.2e-05	0.0548	GTATCGCGAGATCAG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	81	95	+	13.5606	1.2e-05	0.0548	GTATCGCGAGATCAG
POU6F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	33	42	+	13.6909	1.2e-05	1	GGCTCATTAT
POU6F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	72	81	+	13.6909	1.2e-05	1	GGCTCATTAT
GLIS2	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	18	31	+	12.3934	1.2e-05	0.176	CGCCCCCCCCGACG
GLIS2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	12	25	-	12.3934	1.2e-05	0.176	GACCCCACGCCTTG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	90	103	+	12.3934	1.2e-05	0.176	GACCCCACGCCTTG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	90	103	+	12.3934	1.2e-05	0.176	GACCCCACGCCTTG
GLIS2	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	84	97	-	12.3934	1.2e-05	0.176	CGCCCCCCCCGACG
SP2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	4	18	-	13.6379	1.2e-05	0.00495	CCCCCACCCCCTGAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	19	33	+	13.6379	1.2e-05	0.00495	CCACCGCCCCTCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	19	33	+	13.6379	1.2e-05	0.00495	CCACCGCCCCTCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	19	33	+	13.6379	1.2e-05	0.00495	CCACCGCCCCTCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	19	33	+	13.6379	1.2e-05	0.00495	CCACCGCCCCTCCCG
SP2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	31	45	+	13.6379	1.2e-05	0.00495	TCTCCACCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	71	85	+	13.6379	1.2e-05	0.00495	GCCCCACCCACTGAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	71	85	+	13.6379	1.2e-05	0.00495	GCCCCACCCACTGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	71	85	+	13.6379	1.2e-05	0.00495	GCCCCACCCACTGAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	71	85	+	13.6379	1.2e-05	0.00495	GCCCCACCCACTGAC
SP2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	70	84	-	13.6379	1.2e-05	0.00495	TCTCCACCCCCGCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	64	73	+	13.5596	1.2e-05	0.027	ACCCCCCCAG
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	+	13.3818	1.2e-05	0.0992	GGTGACGTAACC
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	+	13.3818	1.2e-05	0.0992	GGTGACGTAACC
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	+	13.3818	1.2e-05	0.0992	GGTGACGTAACC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	+	13.3818	1.2e-05	0.0992	GGTGACGTAACC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	56	69	+	13.493	1.2e-05	0.129	TAAAAAGGGAAGAA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	56	69	+	13.493	1.2e-05	0.129	TAAAAAGGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.0.0	83	96	-	13.493	1.2e-05	0.129	TAAAAAGGGAAGAA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.1.0	83	96	-	13.493	1.2e-05	0.129	TAAAAAGGGAAGAA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	31	44	+	13.5385	1.2e-05	0.00854	CACCCACCCACACT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	31	44	+	13.5385	1.2e-05	0.00854	CACCCACCCACACT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	25	38	-	13.5385	1.2e-05	0.00854	CCGCCTCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	25	38	-	13.5385	1.2e-05	0.00854	GCGCCACCCCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	25	38	-	13.5385	1.2e-05	0.00854	GCGCCACCCCCATC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	29	42	-	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	37	50	-	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	65	78	+	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	73	86	+	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	65	78	-	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	68	81	-	13.5385	1.2e-05	0.00854	CCGCCTCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	82	95	+	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	82	95	+	13.5385	1.2e-05	0.00854	CTTCCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	71	84	-	13.5385	1.2e-05	0.00854	AGTCCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	71	84	-	13.5385	1.2e-05	0.00854	AGTCCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	71	84	-	13.5385	1.2e-05	0.00854	AGTCCGCCCCCGGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	71	84	-	13.5385	1.2e-05	0.00854	CGCCCGCCCCTTCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	+	13.5818	1.2e-05	0.0548	AGCCCTGAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	-	13.5818	1.2e-05	0.0548	AGCCCTGAGGCG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	18	32	+	9.66292	1.2e-05	0.163	GGCATCTTGGGGGGC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	67	81	-	9.66292	1.2e-05	0.163	GGCATCTTGGGGGGC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	23	43	+	12.8548	1.2e-05	0.12	TTTTTTTTTCCCTTTTCCTTT
HLF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	+	13.5932	1.2e-05	1	CCTTACGTAATT
STAT1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	15	25	+	14.2545	1.2e-05	0.167	CTTCCGGGAAC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	42	52	+	14.2545	1.2e-05	0.167	CTTCCGGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	42	52	+	14.2545	1.2e-05	0.167	CTTCCGGGAAC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	42	52	+	14.2545	1.2e-05	0.167	CTTCCGGGAAC
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	42	52	+	14.2545	1.2e-05	0.167	CTTCCGGGAAC
STAT1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	90	100	-	14.2545	1.2e-05	0.167	CTTCCGGGAAC
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	51	66	-	8.06897	1.2e-05	0.258	GTCCCGGCATGCACCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	51	66	-	8.06897	1.2e-05	0.258	GTCCCGGCATGCACCG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	51	66	-	8.06897	1.2e-05	0.258	GTCCCGGCATGCACCG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	51	66	-	8.06897	1.2e-05	0.258	GTCCCGGCATGCACCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	51	66	-	8.06897	1.2e-05	0.258	GTCCCGGCATGCACCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	34	49	+	13.2727	1.2e-05	0.0318	CCCCCCCCCCGCACGC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	26	44	+	12.4262	1.2e-05	0.0689	CCGCCACCAGAGGCAGCGG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	15	25	+	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	48	58	+	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	48	58	+	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	48	58	+	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	48	58	+	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	26	-	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	84	-	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	84	-	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	84	-	14.0328	1.2e-05	0.118	AACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	84	-	14.0328	1.2e-05	0.118	AACAGGAAATG
HOXD12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	86	+	14.1639	1.2e-05	1	GGTCATAAAAA
HOXD12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	86	+	14.1639	1.2e-05	1	GGTCATAAAAA
NFYA	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	2	19	+	13	1.2e-05	0.0635	GGGGCGCCGATTGGAGCC
E2F4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	56	66	-	14.4138	1.2e-05	0.0352	GCGCGGGAGGT
E2F4	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	73	83	+	14.4138	1.2e-05	0.0352	GCGCGGGAGCG
NRL	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	84	94	-	12.2692	1.2e-05	0.648	GTTGTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	21	31	+	12.2692	1.2e-05	0.648	GTTGTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	21	31	+	12.2692	1.2e-05	0.648	GTTGTGCTGAC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	21	+	14.2857	1.2e-05	0.11	AACAGCTGGTA
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	71	81	-	14.2857	1.2e-05	0.11	CACAGCTGCAG
Tcf12	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	103	+	14.2857	1.2e-05	0.11	AGCAGCTGCTC
Tcf12	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	92	102	-	14.2857	1.2e-05	0.11	AGCAGCTGCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	11	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	11	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	13	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	13	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	16	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	18	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	18	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	22	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	22	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	23	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	23	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	23	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	23	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	28	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	29	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	20	30	+	13.3577	1.2e-05	0.00936	ACCACGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	32	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	33	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	33	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	34	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	34	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	37	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	37	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	37	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	38	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	38	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	38	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	40	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	42	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	42	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	42	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	43	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	43	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	43	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	43	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	43	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	45	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	45	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	45	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	45	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	45	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	46	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	47	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	53	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	59	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	59	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	63	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	66	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	66	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	66	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	66	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	66	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	70	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	75	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	76	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	80	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	80	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	82	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	83	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	90	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	90	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	90	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	90	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	99	+	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	113	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	104	114	+	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	1	11	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	2	12	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	2	12	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	2	12	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	2	12	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	5	15	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	5	15	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	8	18	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	9	19	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	9	19	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	9	19	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	9	19	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	10	20	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	10	20	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	11	21	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	11	21	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	11	21	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	11	21	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	11	21	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	13	23	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	15	25	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	15	25	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	16	26	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	16	26	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	17	27	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	17	27	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	17	27	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	18	28	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	29	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	29	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	19	29	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	19	29	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	29	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	20	30	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	21	31	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	23	33	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	25	35	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	25	35	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	25	35	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	25	35	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	26	36	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	26	36	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	27	37	-	13.3577	1.2e-05	0.00936	ACCACGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	27	37	-	13.3577	1.2e-05	0.00936	ACCACGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	28	38	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	28	38	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	30	40	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	30	40	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	32	42	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	32	42	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	32	42	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	32	42	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	32	42	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	33	43	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	34	44	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	35	45	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	35	45	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	37	47	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	37	47	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	37	47	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	37	47	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	37	47	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	38	48	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	39	49	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	42	52	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	42	52	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	42	52	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	42	52	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	42	52	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	45	55	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	45	55	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	45	55	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	49	59	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	51	61	-	13.3577	1.2e-05	0.00936	GCCCCGCCCTC
SP3	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	57	67	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	58	68	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	58	68	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	58	68	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	62	72	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	69	79	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	70	80	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	71	81	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	73	83	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	75	85	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	75	85	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	77	87	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	87	97	-	13.3577	1.2e-05	0.00936	GCCCCGCCCCG
GLI2	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	86	97	+	13.5517	1.21e-05	0.33	GCGACCACAGTC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	23	32	+	13.8525	1.21e-05	0.114	GATCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	23	32	+	13.8525	1.21e-05	0.114	GATCACGTGC
Arntl	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	24	-	13.8525	1.21e-05	0.114	TGTCACGTGG
Arntl	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	83	92	-	13.8525	1.21e-05	0.114	GATCACGTGC
Mlxip	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	26	33	+	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	48	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	41	48	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	48	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	41	48	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	82	89	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	82	89	-	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	94	101	+	14.0984	1.21e-05	0.275	GCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	94	101	+	14.0984	1.21e-05	0.275	GCACGTGT
Id2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	4	11	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	16	23	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	16	23	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	25	32	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	25	32	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	25	32	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	33	40	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	35	42	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	35	42	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	50	57	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	56	63	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	52	59	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	55	62	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	55	62	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	58	65	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	69	76	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	69	76	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	69	76	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	68	75	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	68	75	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	74	81	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	74	81	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	83	90	+	14.3443	1.21e-05	0.29	GCACGTGA
Id2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	83	90	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	88	95	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	88	95	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	96	103	-	14.3443	1.21e-05	0.29	GCACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	104	111	+	14.3443	1.21e-05	0.29	GCACGTGA
ETV6	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.8462	1.21e-05	0.0636	GCCGGAAGTA
ETV6	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.8462	1.21e-05	0.0636	GCCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.8462	1.21e-05	0.0636	GCCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.8462	1.21e-05	0.0636	GCCGGAAGTA
ETV6	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.8462	1.21e-05	0.0636	GCCGGAAGTA
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	18	29	+	13.3455	1.21e-05	0.0992	TCTGACGTCACA
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	22	39	-	10.1207	1.21e-05	0.117	AGAACACACCCCTCCTAG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	22	39	-	10.1207	1.21e-05	0.117	AGAACACACCCCTCCTAG
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	78	90	-	12.6034	1.21e-05	0.108	AGCCCGGAAGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	78	90	-	12.6034	1.21e-05	0.108	AGCCCGGAAGTGG
ELF3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	25	37	+	12.6034	1.21e-05	0.108	AGCCCGGAAGTGG
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	9	19	-	13.9038	1.21e-05	0.00564	CTCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	40	50	-	13.9038	1.21e-05	0.00564	CTCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	50	60	-	13.9038	1.21e-05	0.00564	CTCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	67	77	-	13.9038	1.21e-05	0.00564	CTCCCGCCTCC
Klf12	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	13	27	-	12.4918	1.21e-05	0.032	GGCGACGCCCAATGG
Klf12	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	88	102	+	12.4918	1.21e-05	0.032	GGCGACGCCCAATGG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	18	31	+	12.377	1.21e-05	0.176	GAGCCCCCGCAAGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	18	31	+	12.377	1.21e-05	0.176	GAGCCCCCGCAAGG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	73	86	+	14.1538	1.21e-05	0.135	GGAAGCTGACTCAG
REL	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	32	41	-	13.404	1.21e-05	0.203	GGGGGATTCC
ELF1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	35	46	+	13.2727	1.21e-05	0.074	GACCCGGATGTG
ELF1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	80	-	13.2727	1.21e-05	0.074	GACCCGGATGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	5	14	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	5	14	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	10	19	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	16	25	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	19	28	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	19	28	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	19	28	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	19	28	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	22	31	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	32	41	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	32	41	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	54	63	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	46	55	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	60	69	+	12.6667	1.21e-05	0.103	GGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	52	61	-	12.6667	1.21e-05	0.103	GGAGGGGGGG
MSC	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	+	13.7805	1.21e-05	0.569	AGCAGCTGTT
MSC	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	+	13.7805	1.21e-05	0.569	AGCAGCTGTT
MSC	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	-	13.7805	1.21e-05	0.569	AGCAGCTGTT
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	6	23	+	-5.65789	1.21e-05	0.0229	GGGAGGGAAGGAGAAAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	25	42	-	-5.65789	1.21e-05	0.0229	GGGAGGGAAGGAGAAAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	73	90	+	-5.65789	1.21e-05	0.0229	GGGAGGGAAGGAGAAAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	92	109	-	-5.65789	1.21e-05	0.0229	GGGAGGGAAGGAGAAAGG
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	+	6.19231	1.21e-05	0.558	TGACAGCCGTGA
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	+	6.19231	1.21e-05	0.558	TGACAGCCGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	86	-	13.2793	1.21e-05	0.138	TCAGGGCAAAGTCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	86	-	13.2793	1.21e-05	0.138	TCAGGGCAAAGTCCA
TFAP2B	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	+	13.5455	1.21e-05	0.0893	CGCCTTGGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	-	13.5455	1.21e-05	0.0893	CGCCTTGGGGCG
IRF2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	22	39	+	10.3853	1.21e-05	0.396	CGTAAGTGAAACTTAACT
IRF2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	76	93	-	10.3853	1.21e-05	0.396	CGTAAGTGAAACTTAACT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	63	77	+	13.2121	1.21e-05	0.176	TCCAGTGACTCAGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	+	13.7213	1.21e-05	0.0517	TCCCCTCCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	-	13.7213	1.21e-05	0.0517	TGCCTTGTGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	-	13.7213	1.21e-05	0.0517	TGCCTTGTGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	-	13.7213	1.21e-05	0.0517	TGCCTTGTGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	-	13.7213	1.21e-05	0.0517	TGCCTTGTGGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	-	13.7213	1.21e-05	0.0517	TCCCCTCCAGGCA
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	43	-	2.25714	1.21e-05	0.649	GAGAGGAAAAGGTCA
Nr2f6(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	47	61	+	2.25714	1.21e-05	0.649	GGTATCAATAGGTCA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	3	22	-	9.07339	1.21e-05	0.0389	CCCCCCACCCATCCCACCCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	56	75	-	9.07339	1.21e-05	0.0389	CCCCGCCCCACCCCCGCTCC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	+	12.7959	1.21e-05	0.0756	GGTGACGTAACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	+	12.7959	1.21e-05	0.0756	GGTGACGTAACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	+	12.7959	1.21e-05	0.0756	GGTGACGTAACC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	+	12.7959	1.21e-05	0.0756	GGTGACGTAACC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	15	24	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	15	24	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	15	24	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	15	24	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	19	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	10	19	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	23	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	35	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	35	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	35	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	35	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	56	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	56	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	59	68	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	66	75	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	96	105	+	13.9082	1.21e-05	0.0101	GGGGCGTGGT
Klf4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	91	100	-	13.9082	1.21e-05	0.0101	GGGGCGTGGT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	47	61	-	13.5455	1.21e-05	0.0548	CTCCCGCGACATCAC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	47	61	-	13.5455	1.21e-05	0.0548	CTCCCGCGACATCAC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	47	61	-	13.5455	1.21e-05	0.0548	CTCCCGCGACATCAC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	47	61	-	13.5455	1.21e-05	0.0548	CTCCCGCGACATCAC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	47	61	-	13.5455	1.21e-05	0.0548	CTCCCGCGACATCAC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	87	101	-	13.5455	1.21e-05	0.0548	CCCTCGCGCGGCTCC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	3	15	+	12.9091	1.21e-05	0.212	GCGGGATTCCCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	3	15	+	12.9091	1.21e-05	0.212	GCGGGATTCCCCC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	25	45	-	12.8163	1.21e-05	0.00701	GAATCAGGCGCGGGGGAAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	70	90	+	12.8163	1.21e-05	0.00701	GAATCAGGCGCGGGGGAAGGG
MEF2B	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	-	11.9636	1.21e-05	0.299	TCTATAATTAGC
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	41	57	+	1.58427	1.21e-05	0.401	TTAGCACAAAGGTCACC
NR1H2::RXRA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	41	57	+	1.58427	1.21e-05	0.401	TTAGCACAAAGGTCACC
RFX3	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	+	12.803	1.21e-05	0.083	CGTCGCCATGGCGCCA
RFX3	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	-	12.803	1.21e-05	0.083	CGTCGCCATGGCGCCA
FOSL2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	3	13	+	14.5455	1.21e-05	0.113	CAGTGACTCAG
FOSL2	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	8	18	+	14.5455	1.21e-05	0.113	CAGTGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	65	75	+	14.5455	1.21e-05	0.113	CAGTGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	99	109	+	14.5455	1.21e-05	0.113	GCGTGACTCAG
FOSL2	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	104	114	+	14.5455	1.21e-05	0.113	GCATGACTCAG
FOSL2	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	1	11	-	14.5455	1.21e-05	0.113	GCATGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	31	41	-	14.5455	1.21e-05	0.113	GCGTGACTCAG
FOSL2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	102	112	-	14.5455	1.21e-05	0.113	CAGTGACTCAG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	15	+	14.2245	1.21e-05	0.0904	CACAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	15	+	14.2245	1.21e-05	0.0904	CACAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	53	63	-	14.2245	1.21e-05	0.0904	GACAGCTGCTT
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	53	63	-	14.2245	1.21e-05	0.0904	GACAGCTGCTT
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	78	88	-	13.5182	1.21e-05	0.52	AGAGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	78	88	-	13.5182	1.21e-05	0.52	AGAGTAGCAGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	19	33	+	13.6207	1.21e-05	0.00498	CGCCCGCCCCGGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	19	33	+	13.6207	1.21e-05	0.00498	CGCCCGCCCCGGTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	37	51	+	13.6207	1.21e-05	0.00498	CTTCCGCCTCCCTGC
SP2	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	53	67	+	13.6207	1.21e-05	0.00498	CTTCCGCCTCCCTGC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	48	62	-	13.6207	1.21e-05	0.00498	CTTCCGCCTCCCTGC
SP2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	64	78	-	13.6207	1.21e-05	0.00498	CTTCCGCCTCCCTGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	65	79	-	13.6207	1.21e-05	0.00498	GACCCGCCCTCTCTC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	10	20	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	10	20	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	21	31	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	31	41	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	40	50	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	40	50	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	40	50	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	40	50	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	40	50	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	65	75	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	66	76	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	66	76	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	66	76	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	66	76	+	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	84	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	-	13.9038	1.21e-05	0.0588	GGCCTGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	83	93	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	83	93	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	94	-	13.9038	1.21e-05	0.0588	CGCCTCGGGCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	47	60	+	13.2857	1.21e-05	0.196	CCGCCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	47	60	+	13.2857	1.21e-05	0.196	CCGCCACGTGACCC
HES7	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	100	111	-	9.25862	1.21e-05	0.189	TGGCCCGTGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	12	28	-	9.61818	1.21e-05	0.0119	CGTACCCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	12	28	-	9.61818	1.21e-05	0.0119	CGTACCCCGCCCCCGCC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	6	16	+	13.0545	1.21e-05	0.0978	ACAAGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	6	16	+	13.0545	1.21e-05	0.0978	ACAAGGAAGTA
ELF5	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	21	31	-	13.0545	1.21e-05	0.0978	TCCAGGAAGTA
ELF5	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	54	64	+	13.0545	1.21e-05	0.0978	TCCAGGAAGTA
ELF5	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	51	61	-	13.0545	1.21e-05	0.0978	TCCAGGAAGTA
BHLHE22	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	14.3788	1.21e-05	1	AACATATGCC
BHLHE22	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	14.3788	1.21e-05	1	AACATATGCC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	6	15	-	13.4615	1.21e-05	0.38	AGCACCTGGG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	6	15	-	13.4615	1.21e-05	0.38	AGCACCTGGG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	45	54	-	13.4615	1.21e-05	0.38	AGCACCTGGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	+	13.8689	1.21e-05	0.0626	AGCCCTCCAGGCT
NHLH1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	24	33	-	13.7414	1.21e-05	0.0944	CTCAGCTGCG
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	68	77	+	13.8182	1.21e-05	1	AAGGTGTGAG
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	68	77	+	13.8182	1.21e-05	1	AAGGTGTGAG
TBX21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	68	77	+	13.8182	1.21e-05	1	AAGGTGTGAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	65	82	-	-5.67105	1.21e-05	0.0229	AGGAAAGAGGAAGGAAAG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	40	+	13.5192	1.21e-05	0.00855	GCCCCGCCCTCACA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	40	+	13.5192	1.21e-05	0.00855	GCCCCGCCCTCACA
EGR1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	24	37	-	13.5192	1.21e-05	0.00855	GCTCCGCTCCCACC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	41	54	+	13.5192	1.21e-05	0.00855	GCTCCGCTCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	32	45	-	13.5192	1.21e-05	0.00855	CTGCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	32	45	-	13.5192	1.21e-05	0.00855	CTGCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	32	45	-	13.5192	1.21e-05	0.00855	CTGCCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	32	45	-	13.5192	1.21e-05	0.00855	CTGCCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	70	83	+	13.5192	1.21e-05	0.00855	CTGCCTCCTCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	61	74	-	13.5192	1.21e-05	0.00855	GCTCCGCTCCCACC
EGR1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	78	91	+	13.5192	1.21e-05	0.00855	GCTCCGCTCCCACC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	13.8793	1.21e-05	0.16	GGCACGTGTT
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	13.8793	1.21e-05	0.16	GGCACGTGTT
KLF14	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	52	65	-	12.8793	1.21e-05	0.0183	CGCCCCGCCCATCA
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	37	47	+	13.9672	1.21e-05	0.0305	CCGGAAGTGTG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	39	49	-	13.9672	1.21e-05	0.0305	CCGGAAGTGTG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	39	49	-	13.9672	1.21e-05	0.0305	CCGGAAGTGTG
Gabpa	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	41	51	-	13.9672	1.21e-05	0.0305	CCGGAAGTGTG
Gabpa	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	64	74	+	13.9672	1.21e-05	0.0305	CCGGAAGTGTG
SP8	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	26	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	7	18	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	7	18	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	32	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	14	25	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	41	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	41	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	41	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	42	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	43	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	60	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	44	55	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	44	55	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	44	55	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	73	84	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	73	84	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	73	84	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	73	84	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	74	85	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	96	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	74	85	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	101	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	83	94	-	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	108	+	13.5658	1.21e-05	0.0158	GCCCCGCCTCCT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	+	12.7755	1.22e-05	0.0756	GATGACGTAAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	+	12.7755	1.22e-05	0.0756	GATGACGTAAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	+	12.7755	1.22e-05	0.0756	GATGACGTAAGC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	+	12.7755	1.22e-05	0.0756	GATGACGTAAGC
GLIS2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	25	38	+	12.3607	1.22e-05	0.176	GCCCCCCAGCGTCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.7636	1.22e-05	0.0776	TCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.7636	1.22e-05	0.0776	TCCGGAAGTG
ERG	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.7636	1.22e-05	0.0776	TCCGGAAGTG
ERG	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.7636	1.22e-05	0.0776	TCCGGAAGTG
ERG	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.7636	1.22e-05	0.0776	TCCGGAAGTG
ELK4	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	37	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	57	67	+	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	58	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	58	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	78	88	+	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	78	88	+	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	101	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	101	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	101	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	101	-	14.0364	1.22e-05	0.034	ACGCTTCCGGT
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	3	13	-	13.898	1.22e-05	0.0785	TCCATGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	3	13	-	13.898	1.22e-05	0.0785	TCCATGTGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	24	34	+	13.898	1.22e-05	0.0785	TCCATGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	24	34	+	13.898	1.22e-05	0.0785	TCCATGTGACC
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	7	21	+	13.197	1.22e-05	0.176	AGGAGTTACTCAGCA
Hoxa11	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	55	66	+	13.4194	1.22e-05	1	CGTCGTAAAAAG
Hoxa11	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	49	60	-	13.4194	1.22e-05	1	CGTCGTAAAAAG
Hoxa11	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	49	60	-	13.4194	1.22e-05	1	CGTCGTAAAAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	95	105	+	14.3966	1.22e-05	0.0352	CCGCGGGAAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	95	105	+	14.3966	1.22e-05	0.0352	CCGCGGGAAGA
ELF3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	31	43	-	12.5862	1.22e-05	0.108	GACCCGGAAGAGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	26	38	-	13.9796	1.22e-05	0.326	CAAAGGTCAAAAA
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	26	38	-	13.9796	1.22e-05	0.326	CAAAGGTCAAAAA
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	26	38	-	13.9796	1.22e-05	0.326	CAAAGGTCAAAAA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	18	29	-	13.8276	1.22e-05	0.365	CCGCCCCCCGAA
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	18	29	-	13.8276	1.22e-05	0.365	CCGCCCCCCGAA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	18	29	-	13.8276	1.22e-05	0.365	CCGCCCCCCGAA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	18	29	-	13.8276	1.22e-05	0.365	CCGCCCCCCGAA
SCRT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	24	38	+	12.3443	1.22e-05	0.494	TCTCAACAAGTGTGC
SCRT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	24	38	+	12.3443	1.22e-05	0.494	TCTCAACAAGTGTGC
SCRT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	82	96	-	12.3443	1.22e-05	0.494	TCTCAACAAGTGTGC
SCRT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	82	96	-	12.3443	1.22e-05	0.494	TCTCAACAAGTGTGC
NFE2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	-	13.5102	1.22e-05	0.175	TATGACTCATT
REST	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	79	99	-	9.58163	1.22e-05	0.198	CTCGGGCCCAGGGGCAGTGCC
SP4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	5	21	-	9.6	1.22e-05	0.0119	CACGCCCCCCCCACCCT
SP4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	94	110	+	9.6	1.22e-05	0.0119	CACGCCCCCCCCACCCT
ETV2	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	57	-	14.0164	1.22e-05	0.118	AACCGGAAGCC
NFYB	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	9	23	+	13.9423	1.22e-05	0.0847	CCAGCGGCCAATGGG
NFYB	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	43	57	+	13.9423	1.22e-05	0.0847	CCAGCGGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	3	17	-	13.9423	1.22e-05	0.0847	GCAAGAGCCAATCAC
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	3	17	-	13.9423	1.22e-05	0.0847	GCAAGAGCCAATCAC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	19	36	+	10.0862	1.22e-05	0.117	AAGCCACGTCCCCCGTGT
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	19	36	+	10.0862	1.22e-05	0.117	AAGCCACGTCCCCCGTGT
E2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	30	41	+	13.7377	1.22e-05	0.334	TTGGGCGCCACT
E2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	30	41	+	13.7377	1.22e-05	0.334	TTGGGCGCCACT
E2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	30	41	+	13.7377	1.22e-05	0.334	TTGGGCGCCACT
E2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	30	41	+	13.7377	1.22e-05	0.334	TTGGGCGCCACT
EHF	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	67	78	+	13.5082	1.22e-05	0.0902	CAGGCGGAAGTG
MLX	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	13.8143	1.22e-05	0.188	GGCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	13.8143	1.22e-05	0.188	GGCACGTGAC
FOSL1	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	54	64	+	14.4909	1.22e-05	0.114	GATGACTCAGA
FOSL1	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	51	61	-	14.4909	1.22e-05	0.114	GATGACTCAGA
TFAP2C	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	+	13.4286	1.22e-05	0.0857	TGCCCCGGGGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	23	+	11.1489	1.22e-05	0.0959	CCCCCCCCACAGTG
BATF3	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	31	44	-	7.34848	1.22e-05	0.108	CCATGACATCATCC
GSX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.254	1.22e-05	1	CCCAATTAAA
GSX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.254	1.22e-05	1	CCCAATTAAA
GSX1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.254	1.22e-05	1	CCCAATTAAA
ZBTB7A	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	74	85	-	13.6429	1.22e-05	0.217	TCCGCCCACCGC
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	30	41	+	13.6429	1.22e-05	0.217	TCCGCCCACCGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	30	41	+	13.6429	1.22e-05	0.217	TCCGCCCACCGC
HOXC11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	20	30	+	13.9138	1.22e-05	1	AATCGTAAAAC
HOXC11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	86	+	13.9138	1.22e-05	1	GGTCATAAAAA
HOXC11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	86	+	13.9138	1.22e-05	1	GGTCATAAAAA
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	29	44	-	13.197	1.22e-05	0.0978	GGGCGCCATAGCAACG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	29	44	-	13.197	1.22e-05	0.0978	GGGCGCCATAGCAACG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	29	44	-	13.197	1.22e-05	0.0978	GGGCGCCATAGCAACG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	29	44	-	13.197	1.22e-05	0.0978	GGGCGCCATAGCAACG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	29	44	-	13.197	1.22e-05	0.0978	GGGCGCCATAGCAACG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	61	74	-	12.3429	1.22e-05	0.0899	CCGTGACGTAACAC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	+	13.7049	1.22e-05	0.0517	CGCCCTAGGGGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	29	43	+	13.6034	1.22e-05	0.005	GCTCCGCCTTCCCTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	61	75	+	13.6034	1.22e-05	0.005	CCCCCGCCTCCGGAA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	61	75	+	13.6034	1.22e-05	0.005	CCCCCGCCTCCGGAA
SP2	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	67	81	+	13.6034	1.22e-05	0.005	GCTCCACCCCTCCTC
SP2	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	88	+	13.6034	1.22e-05	0.005	AGCCCGCCCACTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	75	89	+	13.6034	1.22e-05	0.005	TTTCCGCCTCTGCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	75	89	+	13.6034	1.22e-05	0.005	TTTCCGCCTCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	75	89	+	13.6034	1.22e-05	0.005	TTTCCGCCTCTGCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	75	89	+	13.6034	1.22e-05	0.005	TTTCCGCCTCTGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	26	40	-	13.6034	1.22e-05	0.005	TTTCCGCCTCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	27	41	-	13.6034	1.22e-05	0.005	AGCCCGCCCACTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	27	41	-	13.6034	1.22e-05	0.005	AGCCCGCCCACTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	64	78	-	13.6034	1.22e-05	0.005	GTTCCTCCCCTGCCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	44	+	9.0367	1.22e-05	0.0392	CCCCCCCCCCCCGCCCCCCG
FOS	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	+	14.4894	1.22e-05	0.169	TATGAGTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	-	14.4894	1.22e-05	0.169	TATGAGTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	-	14.4894	1.22e-05	0.169	TATGAGTCATG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	58	72	-	12.459	1.23e-05	0.032	AACGACGCCCTTTTA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	58	72	-	12.459	1.23e-05	0.032	AACGACGCCCTTTTA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	58	72	-	12.459	1.23e-05	0.032	AACGACGCCCTTTTA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	4	24	-	12.7959	1.23e-05	0.00706	TGGGAAGAGGAGGAGGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	4	24	-	12.7959	1.23e-05	0.00706	TGGGAAGAGGAGGAGGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	9	29	-	12.7959	1.23e-05	0.00706	GGAGCCTGGGAGTGGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	9	29	-	12.7959	1.23e-05	0.00706	GGAGCCTGGGAGTGGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	56	76	-	12.7959	1.23e-05	0.00706	GGAGGGCGGGGCAGAGGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	4	24	+	12.7959	1.23e-05	0.00706	GGGGAAGAGCGGAGGAAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	41	61	+	12.7959	1.23e-05	0.00706	GGAGGGCGGGGCAGAGGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	91	111	+	12.7959	1.23e-05	0.00706	TGGGAAGAGGAGGAGGGAAGG
ETS1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.7759	1.23e-05	0.076	GCCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.7759	1.23e-05	0.076	GCCGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.7759	1.23e-05	0.076	GCCGGAAGTA
ETS1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.7759	1.23e-05	0.076	GCCGGAAGTA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	13.6857	1.23e-05	0.0666	ACCGGAACTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	13.6857	1.23e-05	0.0666	ACCGGAACTG
ETS1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.7759	1.23e-05	0.076	GCCGGAAGTA
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	15	28	-	13.5	1.23e-05	0.0086	CCTCCTCCCCCAGG
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	23	36	-	13.5	1.23e-05	0.0086	CCTCCTCCCCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	34	47	-	13.5	1.23e-05	0.0086	ACCCCACCTCCGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	34	47	-	13.5	1.23e-05	0.0086	ACCCCACCTCCGCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	42	55	-	13.5	1.23e-05	0.0086	TTTCCGCCCCCAGC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	79	92	+	13.5	1.23e-05	0.0086	CCTCCTCCCCCAGG
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	87	100	+	13.5	1.23e-05	0.0086	CCTCCTCCCCCAGG
Myod1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	19	31	-	14.1633	1.23e-05	0.111	GGCAGCTGCCTGC
ELF4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	76	-	13.0656	1.23e-05	0.0644	GAAGCGGAAGTA
RREB1	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	47	66	-	9.02752	1.23e-05	0.0392	ACACAACACAACCTACACAG
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	8	18	+	12.25	1.23e-05	0.648	TTACTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	8	18	+	12.25	1.23e-05	0.648	TTACTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	8	18	+	12.25	1.23e-05	0.648	TTACTGCTGAC
NRL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	8	18	+	12.25	1.23e-05	0.648	TTACTGCTGAC
Klf1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	3	13	+	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	36	46	+	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	36	46	+	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	78	88	+	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	27	37	-	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	102	112	-	13.8939	1.23e-05	0.0388	GCCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	102	112	-	13.8939	1.23e-05	0.0388	GCCCCCACCCA
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	12	32	+	12.8065	1.23e-05	0.12	CTTTTCTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	12	32	+	12.8065	1.23e-05	0.12	CTTTTCTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	17	37	+	12.8065	1.23e-05	0.12	CTTTTCTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	17	37	+	12.8065	1.23e-05	0.12	CTTTTCTTTTTTTTTTTTTTT
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	70	83	+	13.2571	1.23e-05	0.196	CGGCGACGTCACAG
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	70	83	+	13.2571	1.23e-05	0.196	CGGCGACGTCACAG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	19	34	+	13.2364	1.23e-05	0.0318	GCCCTCCCCCGCATCA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	55	70	+	13.2364	1.23e-05	0.0318	GCCCTCCCCCGCATCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	55	70	+	13.2364	1.23e-05	0.0318	GCCCTCCCCCGCATCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	51	66	-	13.2364	1.23e-05	0.0318	GCCCTCCCCCGCATCA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	51	66	-	13.2364	1.23e-05	0.0318	GCCCTCCCCCGCATCA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	49	61	-	14.0345	1.23e-05	0.757	TCAATTTGCATGC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	14	24	+	13.7449	1.23e-05	0.239	GACCATGTGGT
Zfx	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	16	29	-	13.9242	1.23e-05	0.0239	CGAACTGCGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	86	99	+	13.9242	1.23e-05	0.0239	CGAACTGCGGCCTG
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	+	10.5918	1.23e-05	0.849	GTGGACAGCGTGTACCG
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	+	10.5918	1.23e-05	0.849	GTGGACAGCGTGTACCG
Foxj3	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	16	32	+	13.6883	1.23e-05	1	CTTGAGTAAACAAAGTG
Foxj3	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	78	94	+	13.6883	1.23e-05	1	CTTGAGTAAACAAAGTG
Foxj3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	21	37	-	13.6883	1.23e-05	1	CTTGAGTAAACAAAGTG
Foxj3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	21	37	-	13.6883	1.23e-05	1	CTTGAGTAAACAAAGTG
Foxj3	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	83	99	-	13.6883	1.23e-05	1	CTTGAGTAAACAAAGTG
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	66	77	-	13.5526	1.23e-05	0.016	CACACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	66	77	-	13.5526	1.23e-05	0.016	CACACCCCCACC
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	5	19	+	11.2759	1.23e-05	0.0283	CTCCGCCTACACACA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	33	43	-	13.4545	1.23e-05	0.00755	GAGCTTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	33	43	-	13.4545	1.23e-05	0.00755	GAGCTTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	47	57	-	13.4545	1.23e-05	0.00755	GCGCGTGCCCC
NRF1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	58	68	+	13.4545	1.23e-05	0.00755	GCGCGTGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	72	82	+	13.4545	1.23e-05	0.00755	GAGCTTGCGCA
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	90	+	14.2653	1.23e-05	0.111	GGCAGCTGCGC
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	+	13.8846	1.23e-05	0.0588	CGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	-	13.8846	1.23e-05	0.0588	CGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	-	13.8846	1.23e-05	0.0588	CGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	-	13.8846	1.23e-05	0.0588	CGCCTGGGGCG
FOXA1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	41	55	+	13.9592	1.23e-05	0.511	TCTCTGTTGACATAG
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	85	99	+	13.9592	1.23e-05	0.511	TGTTTGTTTGCTCAG
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	85	99	+	13.9592	1.23e-05	0.511	TGTTTGTTTGCTCAG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	+	14.4468	1.23e-05	0.169	AATGACTCATT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	+	14.4468	1.23e-05	0.169	AATGACTCATT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	-	14.4468	1.23e-05	0.169	AGTGACTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	-	14.4468	1.23e-05	0.169	AGTGACTCACC
JUND	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	+	14.4468	1.23e-05	0.169	AATGACTCATT
JUND	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	-	14.4468	1.23e-05	0.169	AATGACTCATT
JUND	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	+	14.4468	1.23e-05	0.169	AGTGACTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	-	14.4468	1.23e-05	0.169	AATGACTCATT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	-	14.4468	1.23e-05	0.169	AATGACTCATT
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	13.9231	1.23e-05	0.147	CGCACGTGCT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	13.9231	1.23e-05	0.147	CGCACGTGCT
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	13.9231	1.23e-05	0.147	CGCACGTGCT
BHLHE40	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	13.9231	1.23e-05	0.147	CGCACGTGCT
Creb5	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	44	-	13.2909	1.23e-05	0.0992	AATGACGTCAGA
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	47	63	-	9.56364	1.23e-05	0.012	CCGGCCACTCCCCTCAC
Nr2f6	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	41	-	12.2727	1.23e-05	0.222	AGGGTCAGAGGCCG
Nr2f6	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	74	87	+	12.2727	1.23e-05	0.222	AGGGTCAGAGGCCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	41	55	-	13.2523	1.23e-05	0.138	TTGAGGCAGAGGGGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	40	54	+	13.2523	1.23e-05	0.138	TTGAGGCAGAGGGGA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	44	54	+	14.449	1.23e-05	0.115	GTGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	44	54	+	14.449	1.23e-05	0.115	GTGTGACTCAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	87	97	+	14.449	1.23e-05	0.115	GTGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	9	19	-	14.449	1.23e-05	0.115	GTGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	9	19	-	14.449	1.23e-05	0.115	GTGTGACTCAG
JUNB	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	37	47	-	14.449	1.23e-05	0.115	GAGTGACTCAC
ESRRB	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	43	53	-	13.5	1.23e-05	0.867	TCAAGGTCAGC
ESRRB	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	62	72	+	13.5	1.23e-05	0.867	TCAAGGTCAGC
Foxo1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	30	40	-	13.9483	1.24e-05	0.617	TTCTGTTTACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	25	39	+	12.4426	1.24e-05	0.032	TGCCCCGCCCACCCA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	29	43	+	12.4426	1.24e-05	0.032	GGCCCCGCCCCGCCA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	35	49	-	12.4426	1.24e-05	0.032	GGCCCCGCCCCGCCA
EGR2	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	29	39	-	13.0862	1.24e-05	0.0586	ACACCCACGCC
ETV2	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	42	52	+	14	1.24e-05	0.118	CACCGGAAGCA
ETV2	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	65	75	+	14	1.24e-05	0.118	CACCGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	73	-	14	1.24e-05	0.118	CACCGGAAGCA
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	73	-	14	1.24e-05	0.118	CACCGGAAGCA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	24	+	9.00917	1.24e-05	0.0393	CCCCCCCCCCCCCACCGTGT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	38	49	-	13.0492	1.24e-05	0.0644	AACCGGGAAGTA
ELF4	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	66	77	+	13.0492	1.24e-05	0.0644	AACCGGGAAGTA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	69	83	+	13.1667	1.24e-05	0.176	AGTTATGACTCAGCC
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	69	83	+	13.1667	1.24e-05	0.176	AGTTATGACTCAGCC
SPI1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	52	65	+	8.89091	1.24e-05	0.127	AGAAAGGGGAAGGG
Mecom	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	41	54	+	12.9775	1.24e-05	1	TCGATAAGATAAAT
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	6	20	+	13.5862	1.24e-05	0.00504	CTCCCTCCTCCCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	46	+	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	46	+	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
SP2	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	51	+	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
SP2	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	83	97	+	13.5862	1.24e-05	0.00504	CTCCCTCCCCTCGCT
SP2	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	18	32	-	13.5862	1.24e-05	0.00504	CTCCCTCCCCTCGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	64	78	-	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	64	78	-	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
SP2	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	69	83	-	13.5862	1.24e-05	0.00504	GCCCCACCCACCCGA
YY1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	12	23	-	13.75	1.24e-05	0.0863	TAAGATGGCGTC
YY1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	92	103	+	13.75	1.24e-05	0.0863	TAAGATGGCGTC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	67	-	12.7755	1.24e-05	0.00712	AGGGGGGGGGGGCGGGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	7	27	+	12.7755	1.24e-05	0.00712	AGAGGGGAGGGGAGAAGAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	41	61	+	12.7755	1.24e-05	0.00712	AAAGCAGGGTGGTGCAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	80	100	+	12.7755	1.24e-05	0.00712	GAGGGATCGCGGGCCGGAGGG
SP8	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	41	+	13.5395	1.24e-05	0.0161	GCCCCTCCCCCA
SP8	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	41	52	-	13.5395	1.24e-05	0.0161	GCCCCTCCCCCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	27	40	-	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	88	+	13.4808	1.24e-05	0.00863	GCCCCACCCACATC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	14	28	-	11.2586	1.24e-05	0.0283	CCCTGCCCCCGCGCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	14	28	-	11.2586	1.24e-05	0.0283	CCCTGCCCCCGCGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	17	31	-	11.2586	1.24e-05	0.0283	CCCCGCCCCCACCTT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	95	109	+	11.2586	1.24e-05	0.0283	CCCTGCCCCCGCGCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	95	109	+	11.2586	1.24e-05	0.0283	CCCTGCCCCCGCGCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	33	+	13.8846	1.24e-05	0.00572	GCCCCTCCCAT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	33	+	13.8846	1.24e-05	0.00572	GCCCCTCCCAT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	28	38	+	13.8846	1.24e-05	0.00572	GGCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	28	38	+	13.8846	1.24e-05	0.00572	GGCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	20	30	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	20	30	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	20	30	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	22	32	-	13.8846	1.24e-05	0.00572	GCCCCTCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	44	+	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	44	+	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	65	+	13.8846	1.24e-05	0.00572	GCCCCTCCCAT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	65	+	13.8846	1.24e-05	0.00572	GCCCCTCCCAT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	50	60	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	50	60	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	50	60	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	50	60	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	50	60	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	51	61	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	51	61	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	51	61	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	51	61	-	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	72	+	13.8846	1.24e-05	0.00572	GCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	72	+	13.8846	1.24e-05	0.00572	GCCCCACCCCA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	44	61	-	12.939	1.24e-05	0.0647	ACAGTCGTGATTGGTTCT
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	44	61	-	12.939	1.24e-05	0.0647	ACAGTCGTGATTGGTTCT
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	97	+	13.3455	1.24e-05	0.0974	GCCCCCCCGCGACTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	13.6207	1.24e-05	0.0544	CCCGGAAGTG
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	76	85	+	14.2551	1.24e-05	0.18	GGGGATTCCC
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
ELK3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	13.6207	1.24e-05	0.0544	CCCGGAAGTG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	+	13.6885	1.24e-05	0.0517	GGCCCCGGGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	-	13.6885	1.24e-05	0.0517	GGCCCCGGGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	-	13.6885	1.24e-05	0.0517	GGCCCCGGGGGGC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	+	13.6885	1.24e-05	0.0517	ACCCCGGGGGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	-	13.6885	1.24e-05	0.0517	ACCCCGGGGGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	+	13.6885	1.24e-05	0.0517	GGCCCCGGGGGGC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	-	13.6885	1.24e-05	0.0517	GGCCCCGGGGGGC
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	86	99	+	11.9211	1.24e-05	0.557	AGAACAGCTGCTCA
ELK1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	13.5532	1.24e-05	0.0396	ACCGGAAATG
ELK1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	13.5532	1.24e-05	0.0396	ACCGGAAATG
ELK1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	13.5532	1.24e-05	0.0396	ACCGGAAATG
ELK1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	13.5532	1.24e-05	0.0396	ACCGGAAATG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	12.8727	1.24e-05	0.0689	ACCGGAAGCT
ETV5	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.8727	1.24e-05	0.0689	GCCGGAAGCG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	42	55	-	13.9091	1.24e-05	0.0239	AGAGCCCAGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	42	55	-	13.9091	1.24e-05	0.0239	AGAGCCCAGGCCTA
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	10	20	+	14.1636	1.24e-05	0.167	GTTCCAGGAAC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	10	20	+	14.1636	1.24e-05	0.167	GTTCCAGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	51	61	-	14.1636	1.24e-05	0.167	GTTCCAGGAAC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	51	61	-	14.1636	1.24e-05	0.167	GTTCCAGGAAC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	24	34	+	13.8485	1.24e-05	0.0388	CACCCCACCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	24	34	+	13.8485	1.24e-05	0.0388	CACCCCACCCT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	+	13.5091	1.24e-05	0.0893	CGCCCCGGGGCC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	+	13.5091	1.24e-05	0.0893	GGCCCCAGGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	+	13.5091	1.24e-05	0.0893	CGCCCCGGGGCC
TFAP2B	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	-	13.5091	1.24e-05	0.0893	CGCCCCGGGGCC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	86	96	-	13.8545	1.24e-05	0.721	GAGCACTCAGG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	86	96	-	13.8545	1.24e-05	0.721	GAGCACTCAGG
TFEC	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	+	13.2073	1.24e-05	0.129	GTCACATGAC
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	34	49	-	13.2182	1.24e-05	0.0318	CCCCGCCCCCGCGGGC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	66	81	+	13.2182	1.24e-05	0.0318	CCCCGCCCCCGCGGGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	14	25	+	13.6286	1.24e-05	0.217	CCCGCCCACCGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	14	25	+	13.6286	1.24e-05	0.217	CCCGCCCACCGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	14	25	+	13.6286	1.24e-05	0.217	CCCGCCCACCGC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	14	25	+	13.6286	1.24e-05	0.217	CCCGCCCACCGC
EBF1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	13	26	+	13.1311	1.24e-05	0.365	TCTCCCCCGGGACC
EGR2	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	24	34	+	13.069	1.24e-05	0.0586	CCGCCGACGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	48	61	+	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	50	63	+	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	52	65	-	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	53	66	-	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	53	66	-	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	53	66	-	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	53	66	-	12.8276	1.25e-05	0.0185	CGCCCCGCCCCTCG
FEV	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.7692	1.25e-05	0.0859	GCCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.7692	1.25e-05	0.0859	GCCGGAAGTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.7692	1.25e-05	0.0859	GCCGGAAGTA
FEV	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.7692	1.25e-05	0.0859	GCCGGAAGTA
FEV	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.7692	1.25e-05	0.0859	GCCGGAAGTA
SP3	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	27	37	+	13.3333	1.25e-05	0.00967	GTCACGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	54	64	+	13.3333	1.25e-05	0.00967	GACCCGCCCAC
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	+	13.7586	1.25e-05	0.0537	TGCCTGGAGGGGA
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	-	13.7586	1.25e-05	0.0537	TGCCTGGAGGGGA
STAT3	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	57	67	+	14.0816	1.25e-05	0.16	CTTCCAGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	58	-	14.0816	1.25e-05	0.16	CTTCCAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	58	-	14.0816	1.25e-05	0.16	CTTCCAGGAAG
STAT3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	58	-	14.0816	1.25e-05	0.16	CTTCCAGGAAG
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	+	12.7143	1.25e-05	0.0756	GCTGACGTAACC
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	-	12.7143	1.25e-05	0.0756	GCTGACGTAACC
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	+	12.7143	1.25e-05	0.0756	GCTGACGTAACC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	-	12.7143	1.25e-05	0.0756	GCTGACGTAACC
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	64	76	+	12.5238	1.25e-05	0.377	GCGCGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	64	76	+	12.5238	1.25e-05	0.377	GCGCGGCACGTGA
TEAD4	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	94	103	-	12.3548	1.25e-05	0.651	AACATTCCAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	49	63	-	11.2414	1.25e-05	0.0283	TCGCGCCCACGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	49	63	-	11.2414	1.25e-05	0.0283	TCGCGCCCACGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	15	29	+	11.2414	1.25e-05	0.0283	CCACGCCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	15	29	+	11.2414	1.25e-05	0.0283	CCACGCCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	15	29	+	11.2414	1.25e-05	0.0283	CCACGCCCCCACCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	15	29	+	11.2414	1.25e-05	0.0283	CCACGCCCCCACCCC
EGR3	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	52	66	+	11.2414	1.25e-05	0.0283	TCGCGCCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	2	11	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	2	11	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	27	36	+	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	31	40	+	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	23	32	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	23	32	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	29	38	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	35	44	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	71	80	+	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	85	+	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	79	88	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	79	88	-	14.1429	1.25e-05	0.00799	GCCACACCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	104	113	+	14.1429	1.25e-05	0.00799	GCCACACCCA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	29	42	+	14.1154	1.25e-05	0.135	GGACAGTGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	68	81	+	14.1154	1.25e-05	0.135	GAGTTATGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	68	81	+	14.1154	1.25e-05	0.135	GAGTTATGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	60	73	-	14.1154	1.25e-05	0.135	GGGGGCTGAGTCAG
BATF3	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	13	26	+	7.25758	1.25e-05	0.108	TGTTGACATCATCC
BATF3	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	89	102	-	7.25758	1.25e-05	0.108	TGTTGACATCATCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	41	58	+	-5.76316	1.25e-05	0.0233	GGAGAGGAGAGAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	41	58	+	-5.76316	1.25e-05	0.0233	GGAGAGGAGAGAGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	40	57	-	-5.76316	1.25e-05	0.0233	GGAGAGGAGAGAGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	40	57	-	-5.76316	1.25e-05	0.0233	GGAGAGGAGAGAGGAAGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	58	75	+	-5.76316	1.25e-05	0.0233	GGAGAGGAGAGAGGAAGA
SP8	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	27	38	+	13.5132	1.25e-05	0.0162	GTCACGCCCACC
PAX1	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	53	69	+	10.8364	1.25e-05	0.48	TGTCACGCATGCGTGCG
PAX1	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	46	62	-	10.8364	1.25e-05	0.48	TGTCACGCATGCGTGCG
FOXF2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	78	91	+	14.0667	1.25e-05	1	CTACAGTAAACAAA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	+	13.5455	1.25e-05	0.0548	TGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	+	13.5455	1.25e-05	0.0548	TGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	+	13.5455	1.25e-05	0.0548	CGCCCGCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	+	13.5455	1.25e-05	0.0548	CGCCCGCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	+	13.5455	1.25e-05	0.0548	CGCCCGCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	+	13.5455	1.25e-05	0.0548	CGCCCGCAGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	23	+	14.0816	1.25e-05	0.0688	GTCACGTGATT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	23	+	14.0816	1.25e-05	0.0688	GTCACGTGATT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	66	80	-	13.569	1.25e-05	0.00508	GTTCCTCCTCCGGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	66	80	-	13.569	1.25e-05	0.00508	GTTCCTCCTCCGGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	66	80	-	13.569	1.25e-05	0.00508	GTTCCTCCTCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	66	80	-	13.569	1.25e-05	0.00508	GTTCCTCCTCCGGCC
RREB1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	94	113	-	8.97248	1.25e-05	0.0393	TCCCCCCCCCCCCCCCCCCG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	21	+	8.97248	1.25e-05	0.0393	TCCCCCCCCCCCCCCCCCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	21	+	8.97248	1.25e-05	0.0393	TCCCCCCCCCCCCCCCCCCG
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	89	100	+	13.1636	1.25e-05	0.0748	GAACCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	89	100	+	13.1636	1.25e-05	0.0748	GAACCGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	89	100	+	13.1636	1.25e-05	0.0748	GAACCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	89	100	+	13.1636	1.25e-05	0.0748	GAACCGGAAGCG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	1	15	-	13.9038	1.25e-05	0.0847	CGGGGAGCCAATGAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	1	15	-	13.9038	1.25e-05	0.0847	CGGGGAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	1	15	-	13.9038	1.25e-05	0.0847	CGGGGAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	1	15	-	13.9038	1.25e-05	0.0847	CGGGGAGCCAATGAG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	1	15	-	13.9038	1.25e-05	0.0847	CGGGGAGCCAATGAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	12	22	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	16	26	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	16	26	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	27	37	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	27	37	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	27	37	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	27	37	-	13.8654	1.25e-05	0.00575	GCTCCGCCCCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	-	13.9636	1.25e-05	0.063	CGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	-	13.9636	1.25e-05	0.063	CGCCTGCGGCG
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	13	23	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	13	23	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	13	23	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	13	23	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	29	39	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	32	42	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	33	43	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	59	69	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	68	78	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	88	98	+	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	4	14	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	8	18	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	15	25	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	17	27	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	26	36	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	26	36	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	30	40	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	32	42	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	36	46	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	46	56	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	62	72	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	72	82	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	72	82	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	72	82	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	72	82	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	73	83	-	13.8333	1.25e-05	0.0388	GGCCACGCCCC
HOXB13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	6	15	+	13.4545	1.25e-05	1	CCAATAAACA
HOXB13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	6	15	+	13.4545	1.25e-05	1	CCAATAAACA
HOXB13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	49	58	+	13.4545	1.25e-05	1	CCAATAAACA
HOXB13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	49	58	+	13.4545	1.25e-05	1	CCAATAAACA
HOXB13	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	99	108	+	13.4545	1.25e-05	1	CCAATAAACA
HOXB13	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	100	109	-	13.4545	1.25e-05	1	CCAATAAACA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	8	20	-	14.1429	1.25e-05	0.111	ACCAGCTGTTGGC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	23	35	-	14.1429	1.25e-05	0.111	GCCAGCTGCCGCA
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	23	35	-	14.1429	1.25e-05	0.111	GCCAGCTGCCGCA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	78	96	-	13.3387	1.25e-05	0.137	ATGTGCAGGAAGGCAAGAC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	+	13.8033	1.25e-05	0.0626	TGCCCACAAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	+	13.8033	1.25e-05	0.0626	TGCCCACAAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	+	13.8033	1.25e-05	0.0626	TGCCCACAAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	+	13.8033	1.25e-05	0.0626	TGCCCACAAGGCA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	25	36	+	13.0328	1.25e-05	0.0644	CATCCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	25	36	+	13.0328	1.25e-05	0.0644	CATCCGGAAGTT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	50	67	-	-5.77632	1.25e-05	0.0234	AAAAGAAAAGGAGGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	6	26	-	12.7551	1.25e-05	0.0072	GAGGGATGGGAGGGGTAGGGT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	43	63	+	12.7551	1.25e-05	0.0072	GGGGCTGAGGGGAGGGGTGGG
KLF16	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	34	44	+	13.569	1.25e-05	0.01	CCCACGCCCAT
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	71	81	-	13.569	1.25e-05	0.01	CCCACGCCCAT
EGR1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	9	22	-	13.4615	1.26e-05	0.00868	CTCCCGCCCCTGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	25	38	-	13.4615	1.26e-05	0.00868	GCCCCGCCCCTGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	25	38	-	13.4615	1.26e-05	0.00868	GCCCCGCCCCTGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	34	47	-	13.4615	1.26e-05	0.00868	GCCCCGCCCCTGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	34	47	-	13.4615	1.26e-05	0.00868	GCCCCGCCCCTGGC
EGR1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	77	90	+	13.4615	1.26e-05	0.00868	GCCCCGCCCCTGGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	106	+	13.4615	1.26e-05	0.00868	CTCCCGCCCCTGCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	101	114	-	13.4615	1.26e-05	0.00868	CTCCCACCGCCGCT
Hoxb5	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	81	96	-	13.3896	1.26e-05	1	AGGTTAATGATCACAT
SPI1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	69	-	8.85455	1.26e-05	0.127	CTAAACAGGAAGTG
Zfx	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	42	55	+	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	60	73	-	13.8939	1.26e-05	0.0239	CTGCCCGCGGCCTA
Mitf	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	5	14	-	12.2551	1.26e-05	0.118	TATCACGTGG
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	22	36	-	13.4848	1.26e-05	0.0561	CCCTCGCGCGTCCTG
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	20	34	+	13.4848	1.26e-05	0.0561	CCCTCGCGCGTCCTG
HES5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	61	+	9.48276	1.26e-05	0.213	CAGCACGTGGCG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	61	+	9.48276	1.26e-05	0.213	CAGCACGTGGCG
HES5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	54	65	+	9.48276	1.26e-05	0.213	CGCCACGCGCCG
HES5	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	54	65	-	9.48276	1.26e-05	0.213	CAGCACGTGGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	-	13.6721	1.26e-05	0.0517	TGCCTGGAGGGGA
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	+	13.6721	1.26e-05	0.0517	TGCCTGGAGGGGA
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	9	19	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	14	24	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	20	30	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	20	30	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	22	32	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	34	44	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	29	39	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	43	53	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	47	57	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	58	68	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	61	71	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	62	72	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	68	78	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	68	78	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	68	78	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	68	78	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	71	81	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	83	93	+	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	93	103	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	93	103	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	96	106	-	13.4182	1.26e-05	0.00755	GCGGCGGCGCG
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	20	31	+	13.459	1.26e-05	0.0902	TACCCGGAAGCC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	20	31	+	13.459	1.26e-05	0.0902	TACCCGGAAGCC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	20	31	+	13.459	1.26e-05	0.0902	TACCCGGAAGCC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	73	-	13.459	1.26e-05	0.0902	GTCCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	73	-	13.459	1.26e-05	0.0902	GTCCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	74	85	+	13.459	1.26e-05	0.0902	TACCCGGAAGCC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	74	85	+	13.459	1.26e-05	0.0902	TACCCGGAAGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	12	26	-	11.2241	1.26e-05	0.0283	CCCCGCCCCCGTTCT
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	15	25	+	14.0816	1.26e-05	0.219	CTTTCCCGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	68	78	-	14.0816	1.26e-05	0.219	CTTTCCCGGAA
Stat5a::Stat5b	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	93	103	-	14.0816	1.26e-05	0.219	CGTTCCCAGAA
ZIC4	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	34	48	-	13.3273	1.26e-05	0.0974	CACCGCCCGCCGAGT
ZIC4	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	67	81	+	13.3273	1.26e-05	0.0974	CACCGCCCGCCGAGT
Myc	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	56	65	+	14.0182	1.26e-05	0.189	CCACGTGCTG
Myc	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	59	-	14.0182	1.26e-05	0.189	CCACGTGCTG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	59	-	14.0182	1.26e-05	0.189	CCACGTGCTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	58	73	+	13.2	1.26e-05	0.0318	TTCCGCCCTCGCCTGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	58	73	+	13.2	1.26e-05	0.0318	TTCCGCCCTCGCCTGG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	58	73	+	13.2	1.26e-05	0.0318	TTCCGCCCTCGCCTGG
EGR4	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	82	97	+	13.2	1.26e-05	0.0318	TTCCGCCCTCGCCTGG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	28	41	-	7.22727	1.26e-05	0.108	TCATGACGTCACGT
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	28	41	-	7.22727	1.26e-05	0.108	TCATGACGTCACGT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	28	41	-	7.22727	1.26e-05	0.108	TCATGACGTCACGT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	19	32	-	11.0638	1.26e-05	0.0959	GCCCACCTGTCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	19	32	-	11.0638	1.26e-05	0.0959	GCCCACCTGTCGCG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	5	15	-	14.3276	1.26e-05	0.0358	CCGCGGGAAGC
E2F4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	47	57	-	14.3276	1.26e-05	0.0358	CCGCGGGAAGC
E2F4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	58	68	+	14.3276	1.26e-05	0.0358	CCGCGGGAAGC
ATF7	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	8	21	+	12.2571	1.26e-05	0.0899	CTCTGACGTCACTG
ATF7	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	89	102	+	12.2571	1.26e-05	0.0899	CTCTGACGTCACTG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	13	26	-	12.2571	1.26e-05	0.0899	CTCTGACGTCACTG
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	13	26	-	12.2571	1.26e-05	0.0899	CTCTGACGTCACTG
ATF7	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	94	107	-	12.2571	1.26e-05	0.0899	CTCTGACGTCACTG
IRF7	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	23	36	+	12.6452	1.26e-05	0.382	GGGAAACTGAAACT
IRF7	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	12	25	-	12.6452	1.26e-05	0.382	GGGAAACTGAAACT
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	5	24	-	8.95413	1.26e-05	0.0394	CAACCAATCCCACCCCCACC
TFAP4	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	39	48	-	14.0182	1.26e-05	0.606	ATCAGCTGAC
TFAP4	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	67	76	+	14.0182	1.26e-05	0.606	ATCAGCTGAC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	66	79	+	10.7439	1.26e-05	0.5	TCTGCAGGCGGCCC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	66	79	+	10.7439	1.26e-05	0.5	TCTGCAGGCGGCCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	+	13.7414	1.26e-05	0.0537	GGCCCCCTGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	+	13.7414	1.26e-05	0.0537	GGCCCCCTGGGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	+	13.7414	1.26e-05	0.0537	GGCCCTCTGGGCA
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	49	+	13.2364	1.26e-05	0.0992	TGTGACGTCATA
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	49	+	13.2364	1.26e-05	0.0992	TGTGACGTCATA
Creb5	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	101	112	+	13.2364	1.26e-05	0.0992	TGTGACGTCATA
Creb5	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	14	-	13.2364	1.26e-05	0.0992	TGTGACGTCATA
Creb5	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	77	-	13.2364	1.26e-05	0.0992	TGTGACGTCATA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	58	70	-	12.803	1.26e-05	0.212	AGGGAAACTCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	80	92	+	12.803	1.26e-05	0.212	TGGGAGTTCCCCA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	3	11	+	11.2368	1.26e-05	0.192	TTGCCCGCA
THAP1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	41	49	+	11.2368	1.26e-05	0.192	TTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	64	72	-	11.2368	1.26e-05	0.192	TTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.0.0	64	72	-	11.2368	1.26e-05	0.192	TTGCCCGCA
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	6	19	-	12.2787	1.26e-05	0.176	CGCCCCCCAGGAAG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	6	19	-	12.2787	1.26e-05	0.176	CGCCCCCCAGGAAG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	6	19	-	12.2787	1.26e-05	0.176	CGCCCCCCAGGAAG
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	21	32	-	13.7759	1.26e-05	0.365	GCGCCCCCCGCA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	8	22	-	12.3934	1.26e-05	0.032	GCCCACACCCTTCCT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	51	65	+	12.3934	1.26e-05	0.032	GCCCACACCCTTCCT
Esrrg	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	44	53	-	14.3265	1.26e-05	0.702	TCAAGGTCAG
Esrrg	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	62	71	+	14.3265	1.26e-05	0.702	TCAAGGTCAG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	37	51	-	9.5618	1.26e-05	0.166	GGAACCCTGTGGTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	32	+	13.5517	1.26e-05	0.00511	CCCCCTCCCCCGCAT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	23	37	+	13.5517	1.26e-05	0.00511	TTCCCTCCCCGCCCC
SP2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	62	+	13.5517	1.26e-05	0.00511	CCCCCTCCCCCGCAT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	68	+	13.5517	1.26e-05	0.00511	CCCCCTCCCCCGCAT
SP2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	47	61	-	13.5517	1.26e-05	0.00511	CCCCCTCCCCCGCAT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	53	67	-	13.5517	1.26e-05	0.00511	CCCCCTCCCCCGCAT
SP2	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	78	92	-	13.5517	1.26e-05	0.00511	TTCCCTCCCCGCCCC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	6	23	+	-5.80263	1.26e-05	0.0235	GGGGGGAGAGAAGGGAGG
ELK4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	15	25	+	14.0182	1.26e-05	0.035	CAGCTTCCGGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	20	30	+	14.0182	1.26e-05	0.035	CCTCTTCCGGT
ELF3	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	64	76	-	12.5	1.26e-05	0.108	TTCCCGGAAGCAA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	7	21	+	11.2069	1.27e-05	0.0283	AGCCGCTCCCGCATT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	7	21	+	11.2069	1.27e-05	0.0283	AGCCGCTCCCGCATT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	23	37	+	11.2069	1.27e-05	0.0283	CCACGCCCACCCGGA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	23	37	+	11.2069	1.27e-05	0.0283	CCACGCCCACCCGGA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	23	37	+	11.2069	1.27e-05	0.0283	CCACGCCCACCCGGA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	23	37	+	11.2069	1.27e-05	0.0283	CCACGCCCACCCGGA
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	44	54	+	13.5517	1.27e-05	0.01	CACCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	65	75	+	13.5517	1.27e-05	0.01	CACCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	65	75	+	13.5517	1.27e-05	0.01	CACCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	48	58	-	13.5517	1.27e-05	0.01	CACCCACCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	64	74	-	13.5517	1.27e-05	0.01	CACCCACCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	70	80	-	13.5517	1.27e-05	0.01	CACCCACCCCC
TFAP2B	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	+	13.4909	1.27e-05	0.0893	AGCCTGAAGGCA
TFAP2B	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	-	13.4909	1.27e-05	0.0893	AGCCTGAAGGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	+	13.9455	1.27e-05	0.063	AGCCTGGGGCA
FOSL2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	69	79	+	14.5273	1.27e-05	0.113	GAATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	100	110	+	14.5273	1.27e-05	0.113	GAATGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	100	110	+	14.5273	1.27e-05	0.113	GAATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	4	14	-	14.5273	1.27e-05	0.113	GAATGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	4	14	-	14.5273	1.27e-05	0.113	GAATGAGTCAT
FOSL2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	36	46	-	14.5273	1.27e-05	0.113	GAATGAGTCAT
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	13.4909	1.27e-05	0.189	GACACGTGAC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	13.4909	1.27e-05	0.189	GACACGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	13.4909	1.27e-05	0.189	GACACGTGAC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	13.4909	1.27e-05	0.189	GACACGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	13.4909	1.27e-05	0.189	GACACGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	13.4909	1.27e-05	0.189	GACACGTGAC
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	44	+	12.6735	1.27e-05	0.076	TCTGACGTCATT
BATF3	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	17	30	+	7.19697	1.27e-05	0.108	TGCTGACGTCAGGC
BATF3	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	32	45	-	7.19697	1.27e-05	0.108	TGCTGACGTCAGGC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	70	81	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	70	81	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	70	81	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	70	81	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	77	88	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	103	114	-	13.2742	1.27e-05	0.281	GCGCCCCCCGCC
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	-	10.5102	1.27e-05	0.849	CGGTACACGCTGTCCAC
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	-	10.5102	1.27e-05	0.849	CGGTACACGCTGTCCAC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	34	48	+	14.069	1.27e-05	0.392	GTCTTCTACAGAACA
Stat6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	34	48	+	14.069	1.27e-05	0.392	GTCTTCTACAGAACA
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.0.0	34	48	+	14.069	1.27e-05	0.392	GTCTTCTACAGAACA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	29	39	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	29	39	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	32	42	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	39	49	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	39	49	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	58	68	+	14.0408	1.27e-05	0.16	CTGCCTGGAAA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	22	32	-	13.4	1.27e-05	0.00761	GAGCCCGCGCA
USF2	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	82	92	-	14.0612	1.27e-05	0.0688	CGCATGTGACC
USF2	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	23	33	+	14.0612	1.27e-05	0.0688	CGCATGTGACC
GATA2	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	70	83	+	13.9091	1.27e-05	0.951	TTGGTCTTATCTGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	2	12	+	13.918	1.27e-05	0.0313	CCGGAAGTCCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	2	12	+	13.918	1.27e-05	0.0313	CCGGAAGTCCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	68	78	+	13.918	1.27e-05	0.0313	CCGGAAGTAAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	68	78	+	13.918	1.27e-05	0.0313	CCGGAAGTAAA
Gabpa	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	72	82	+	13.918	1.27e-05	0.0313	CCGGAAGTAAA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	11	21	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	11	21	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	11	21	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	11	21	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	23	33	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	23	33	-	13.803	1.27e-05	0.0388	AGCCACTCCCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	55	75	-	12.7347	1.27e-05	0.00727	GAGGGCGGGGCAGAGGAGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	79	99	-	12.7347	1.27e-05	0.00727	GAGGGCAGAAAGGGAAAAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	42	62	+	12.7347	1.27e-05	0.00727	GAGGGCGGGGCAGAGGAGGAG
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	10	24	+	13.5	1.27e-05	0.265	TGAGTACAAAGACCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	10	24	+	13.5	1.27e-05	0.265	TGAGTACAAAGACCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	58	72	-	13.5	1.27e-05	0.265	TGAGTACAAAGACCA
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	27	40	+	10.7317	1.27e-05	0.5	AATGCACACGATAC
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	80	93	-	10.7317	1.27e-05	0.5	AATGCACACGATAC
SP3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	31	41	+	13.3252	1.27e-05	0.0098	GCCACACCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	11	21	-	13.3252	1.27e-05	0.0098	CCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	16	26	-	13.3252	1.27e-05	0.0098	GCCACACCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	37	47	-	13.3252	1.27e-05	0.0098	CCCCCGCCCCA
SP3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	74	84	-	13.3252	1.27e-05	0.0098	GCCACACCTCC
Creb5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	+	13.2	1.27e-05	0.0992	GCTGACGTAACC
Creb5	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	+	13.2	1.27e-05	0.0992	GCTGACGTAACC
Creb5	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	-	13.2	1.27e-05	0.0992	GCTGACGTAACC
Creb5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	-	13.2	1.27e-05	0.0992	GCTGACGTAACC
RFX2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	-	10.6857	1.27e-05	0.102	TGTCACCATGGGGACT
RFX2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	+	10.6857	1.27e-05	0.102	TGTCACCATGGGGACT
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr13:33112927..33113041,-__1243.1.0.0	91	107	+	8.47541	1.27e-05	0.563	GGGTAACCGAGAGGTGA
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	1	17	+	9.47273	1.27e-05	0.0124	CCGGCCCCTCCCCCCAG
SP4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	57	73	+	9.47273	1.27e-05	0.0124	CAGGCGCCGCCCCCGCG
SP4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	42	58	-	9.47273	1.27e-05	0.0124	CAGGCGCCGCCCCCGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.3455	1.27e-05	0.0716	TCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.3455	1.27e-05	0.0716	TCCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.3455	1.27e-05	0.0716	TCCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.3455	1.27e-05	0.0716	TCCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.3455	1.27e-05	0.0716	TCCGGAAGTG
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	3	19	+	11.3276	1.27e-05	0.882	TGGAACAGTTTGTCCTT
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	3	19	+	11.3276	1.27e-05	0.882	TGGAACAGTTTGTCCTT
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	60	76	-	11.3276	1.27e-05	0.882	TGGAACAGTTTGTCCTT
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	60	76	-	11.3276	1.27e-05	0.882	TGGAACAGTTTGTCCTT
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	18	27	-	13.7755	1.27e-05	0.0106	GGGGTGTGGT
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	44	53	+	13.7755	1.27e-05	0.0106	GGGGTGTGGT
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	62	71	-	13.7755	1.27e-05	0.0106	GGGGTGTGGT
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	88	97	+	13.7755	1.27e-05	0.0106	GGGGTGTGGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	100	109	+	13.7755	1.27e-05	0.0106	GGGGTGTGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	100	109	+	13.7755	1.27e-05	0.0106	GGGGTGTGGT
CREB3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	18	31	-	13.2	1.27e-05	0.196	GGGACACGTGACCG
CREB3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	38	51	-	13.2	1.27e-05	0.196	GGGACACGTGACCG
CREB3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	64	77	+	13.2	1.27e-05	0.196	GGGACACGTGACCG
CREB3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	84	97	+	13.2	1.27e-05	0.196	GGGACACGTGACCG
TP63	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	9	26	+	5.51724	1.27e-05	0.559	AACGCGCCCTGACACGTG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	+	13.6557	1.27e-05	0.0517	TGCCTTGGAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	+	13.6557	1.27e-05	0.0517	TGCCTTGGAGGCA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	47	61	+	12.377	1.27e-05	0.032	GGCCCCGCCCCCGCT
CTCF	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	41	59	-	12.3115	1.27e-05	0.0725	GCGCCACGGGGTGGCACGA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	44	58	-	11.1897	1.27e-05	0.0283	CCCCGCCCACCCTAA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	44	58	-	11.1897	1.27e-05	0.0283	CCCCGCCCACCCTAA
EGR3	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	4	18	+	11.1897	1.27e-05	0.0283	CCGCGCCCCCGCTCC
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	27	40	+	12.2143	1.27e-05	0.0899	TGATGACGTAAGCG
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	27	40	+	12.2143	1.27e-05	0.0899	TGATGACGTAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	72	-	13.0364	1.27e-05	0.0978	TCCCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	72	-	13.0364	1.27e-05	0.0978	TCCCGGAAGTC
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	8	18	+	13.9655	1.27e-05	0.349	GAATCACAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	97	107	-	13.9655	1.27e-05	0.349	GAATCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	97	107	-	13.9655	1.27e-05	0.349	GAATCACAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	97	107	-	13.9655	1.27e-05	0.349	GAATCACAGCA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	97	107	-	13.9655	1.27e-05	0.349	GAATCACAGCA
SPIC	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	10	23	-	13.4085	1.27e-05	0.132	TGAAAGCGAAAGTA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	22	35	-	13.4085	1.27e-05	0.132	TGAAAGCGAAAGTA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	22	35	-	13.4085	1.27e-05	0.132	TGAAAGCGAAAGTA
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	39	+	13.6429	1.28e-05	0.239	GCGCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	36	-	13.6429	1.28e-05	0.239	GCGCACGTGGC
PLAG1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	23	36	+	10.4286	1.28e-05	0.0605	GAGGCGGAGGGGTG
PLAG1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	79	92	-	10.4286	1.28e-05	0.0605	GAGGCGGAGGGGTG
Rarg(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	45	61	+	1.87273	1.28e-05	0.958	GGGGTAAAAATAGGTCA
REST	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	72	92	+	9.46939	1.28e-05	0.198	CGAAGGACCTCGGGGAGCCCC
BARHL2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	54	63	+	11.58	1.28e-05	1	ATTAAACGGT
BARHL2	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	52	61	-	11.58	1.28e-05	1	ATTAAACGGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	103	113	-	14.4364	1.28e-05	0.116	AGTGAGTCAGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	103	113	-	14.4364	1.28e-05	0.116	AGTGAGTCAGA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	21	-	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	21	-	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	21	-	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	21	-	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	22	32	+	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	93	-	13.8182	1.28e-05	0.197	ACCCGGAAGTC
SPDEF	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	94	104	+	13.8182	1.28e-05	0.197	ACCCGGAAGTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	9	22	+	12.7759	1.28e-05	0.0185	AGCTCCGCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	9	22	+	12.7759	1.28e-05	0.0185	AGCTCCGCCCCCTG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	21	30	-	13.5385	1.28e-05	0.439	AGACCACAAA
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	21	30	-	13.5385	1.28e-05	0.439	AGACCACAAA
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	20	29	+	13.5385	1.28e-05	0.439	AGACCACAAA
JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	86	98	+	14.0204	1.28e-05	0.301	GGGCTGATGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	86	98	+	14.0204	1.28e-05	0.301	GGGCTGATGTCAT
JUN	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	17	29	-	14.0204	1.28e-05	0.301	GGGCTGATGTCAT
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	32	40	+	12.9231	1.28e-05	0.516	ATGCCAGCC
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	71	79	+	12.9231	1.28e-05	0.516	ATGCCAGCC
Hic1	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	36	44	-	12.9231	1.28e-05	0.516	ATGCCAGCC
Hic1	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	75	83	-	12.9231	1.28e-05	0.516	ATGCCAGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	-	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	-	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	-	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	+	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	+	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	+	13.8269	1.28e-05	0.097	ATCACATGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	+	13.8269	1.28e-05	0.097	ATCACATGAC
HINFP	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	33	44	-	13.7879	1.28e-05	0.109	CTACGTCCGCCT
HINFP	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	71	82	+	13.7879	1.28e-05	0.109	CTACGTCCGCCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	+	13.3776	1.28e-05	0.0857	CGCCCCGAGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	-	13.3776	1.28e-05	0.0857	CGCCCCGAGGGA
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	-	13.3776	1.28e-05	0.0857	CGCCCCGAGGGA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	12	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	12	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	12	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	31	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	35	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	35	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	43	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	43	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	43	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	43	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	43	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	66	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	66	+	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	24	34	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	24	34	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	72	82	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	73	83	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	73	83	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	73	83	-	13.5345	1.28e-05	0.01	GCCCCTCCCCT
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	4	14	+	14.0612	1.28e-05	0.219	GCTTCCAGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	29	39	+	14.0612	1.28e-05	0.219	GCTTCCAGGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	76	86	-	14.0612	1.28e-05	0.219	GCTTCCAGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	101	111	-	14.0612	1.28e-05	0.219	GCTTCCAGGAA
Hes1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	13	22	-	11.042	1.28e-05	0.0721	TGCACGCGCC
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	58	68	+	13.8852	1.28e-05	0.118	GACCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	58	68	+	13.8852	1.28e-05	0.118	GACCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	58	68	+	13.8852	1.28e-05	0.118	GACCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	58	68	+	13.8852	1.28e-05	0.118	GACCGGAAGTC
ETV2	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	57	-	13.8852	1.28e-05	0.118	GACCGGAAGTC
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	12	31	+	11.2556	1.28e-05	1	CTGCGTAACCGGGACTTCCT
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	12	31	+	11.2556	1.28e-05	1	CTGCGTAACCGGGACTTCCT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	22	36	-	13.4545	1.28e-05	0.0561	ACCTCGCGAGGCTGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	64	78	-	13.4545	1.28e-05	0.0561	GTCCCGCGAGCGCAG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	79	93	+	13.4545	1.28e-05	0.0561	ACCTCGCGAGGCTGC
SP2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	7	21	+	13.5345	1.28e-05	0.00515	CCCCTGCCCCCGGCC
SP2	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	71	+	13.5345	1.28e-05	0.00515	GCTCCTCCCCCTTCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	1	15	-	13.5345	1.28e-05	0.00515	CTCCCTCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	1	15	-	13.5345	1.28e-05	0.00515	CTCCCTCCCCCACGG
SP2	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	44	58	-	13.5345	1.28e-05	0.00515	GCTCCTCCCCCTTCA
SP2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	94	108	-	13.5345	1.28e-05	0.00515	CCCCTGCCCCCGGCC
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	11.9633	1.28e-05	0.591	TGACAAGTGCCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	11.9633	1.28e-05	0.591	TGACAAGTGCCA
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	11	28	-	9.94828	1.28e-05	0.12	GGGACACACCCACCTCAG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	11	28	-	9.94828	1.28e-05	0.12	GGGACACACCCACCTCAG
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	+	12.697	1.28e-05	0.0851	TATTGTCATGGAGACG
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	+	12.697	1.28e-05	0.0851	TATTGTCATGGAGACG
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	+	12.697	1.28e-05	0.0851	TATTGTCATGGAGACG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	+	12.697	1.28e-05	0.0851	TATTGTCATGGAGACG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	89	108	-	8.90826	1.28e-05	0.0399	CCACACCCCAAGCACCGCAG
Rxra	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	48	-	8.2561	1.28e-05	0.264	GGTGACAAAGGTCA
Rxra	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	67	80	+	8.2561	1.28e-05	0.264	GGTGACAAAGGTCA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	28	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	37	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	41	50	+	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	60	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	72	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	72	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	74	-	13.8033	1.28e-05	0.114	AGTCACGTGG
Arntl	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	78	87	+	13.8033	1.28e-05	0.114	AGTCACGTGG
ETV6	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	38	47	-	13.7885	1.28e-05	0.0656	GGCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	49	58	+	13.7885	1.28e-05	0.0656	GGCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	49	58	+	13.7885	1.28e-05	0.0656	GGCGGAAGTT
ETV6	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	66	-	13.7885	1.28e-05	0.0656	GGCGGAAGTT
ETV6	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	68	77	+	13.7885	1.28e-05	0.0656	GGCGGAAGTT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	25	43	+	13.3065	1.28e-05	0.137	GAGAGCAGCGAAGGGGGTC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	25	43	+	13.3065	1.28e-05	0.137	GAGAGCAGCGAAGGGGGTC
TCF7L2	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	92	105	-	13.8182	1.28e-05	1	AGTGTTCAAAGGAA
Stat4	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	9	22	-	13.8966	1.28e-05	0.147	GTTACGGGAAGTCG
Creb5	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	37	48	+	13.1818	1.28e-05	0.0992	CGTGACGTCACG
Creb5	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	78	+	13.1818	1.28e-05	0.0992	CGTGACGTCACG
Creb5	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	37	48	-	13.1818	1.28e-05	0.0992	CGTGACGTCACG
Creb5	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	78	-	13.1818	1.28e-05	0.0992	CGTGACGTCACG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	65	75	+	14.2586	1.28e-05	0.0358	CCGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	65	75	+	14.2586	1.28e-05	0.0358	CCGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	65	75	+	14.2586	1.28e-05	0.0358	CCGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	65	75	+	14.2586	1.28e-05	0.0358	CCGCGGGAGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	100	110	+	14.2586	1.28e-05	0.0358	CCGCGGGAGGG
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	93	+	13.2258	1.28e-05	0.959	TATTGTCATGGAGAC
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	93	+	13.2258	1.28e-05	0.959	TATTGTCATGGAGAC
Pou5f1::Sox2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	93	+	13.2258	1.28e-05	0.959	TATTGTCATGGAGAC
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	93	+	13.2258	1.28e-05	0.959	TATTGTCATGGAGAC
ELF4	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	66	77	+	13	1.28e-05	0.0644	CGCCCGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	33	46	-	8.78182	1.28e-05	0.127	CAAAGGGGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	33	46	-	8.78182	1.28e-05	0.127	CAAAGGGGGAAGTC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr11:62622801..62622915,-__185.1.0.0	74	87	-	13.2414	1.28e-05	0.0959	ATCCCCGTAGCAAC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	15	+	14.1837	1.28e-05	0.112	CACAGCTGCTG
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	15	+	14.1837	1.28e-05	0.112	CACAGCTGCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	8	22	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	8	22	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	8	22	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	8	22	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	68	82	-	12.3607	1.28e-05	0.032	GGCCCCGCCCCGTCC
ID4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	5	14	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	10	19	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	10	19	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	10	19	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	10	19	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	49	58	+	13.7377	1.28e-05	0.389	GGCACCTGGC
ID4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	101	110	-	13.7377	1.28e-05	0.389	GGCACCTGGC
EGR3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	54	68	-	11.1724	1.28e-05	0.0283	CCCCCCCCCCGCGAG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	75	89	-	11.1724	1.28e-05	0.0283	CTCCACCCCCGCCTC
EGR3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	89	103	-	11.1724	1.28e-05	0.0283	CCCCCCCCCCGCGAG
EGR3	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	7	21	+	11.1724	1.28e-05	0.0283	CCACGCCCACCCCAA
EGR3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	12	26	+	11.1724	1.28e-05	0.0283	CCCCCCCCCCGCGAG
EGR3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	47	61	+	11.1724	1.28e-05	0.0283	CCCCCCCCCCGCGAG
LEF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.1.0	60	74	-	12.5323	1.28e-05	1	AGAGATCTAAGGCTT
LEF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.0.0	60	74	-	12.5323	1.28e-05	1	AGAGATCTAAGGCTT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	35	+	13.4231	1.28e-05	0.00884	GCCCCTCCCTCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	28	41	-	13.4231	1.28e-05	0.00884	GCCCCGCCTCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	28	41	-	13.4231	1.28e-05	0.00884	GCCCCGCCTCCATC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	51	64	-	13.4231	1.28e-05	0.00884	GTCCTTCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	88	101	-	13.4231	1.28e-05	0.00884	CACCCGCCGCCGGC
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	78	91	+	12.5968	1.28e-05	0.382	TGGAAACCGAAAAC
IRF7	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	24	37	-	12.5968	1.28e-05	0.382	TGGAAACCGAAAAC
ZNF263	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	92	112	-	12.7143	1.28e-05	0.00733	CGGGGAGGGGCCAGAAGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	3	23	+	12.7143	1.28e-05	0.00733	CGGGGAGGGGCCAGAAGGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	10	30	+	12.7143	1.28e-05	0.00733	GGGGACAGAGGGAAAGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	49	69	+	12.7143	1.28e-05	0.00733	GGGGCTGCAGGAAGGAGAGAG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	8	22	+	13.2909	1.29e-05	0.0974	CCCCGCCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	8	22	+	13.2909	1.29e-05	0.0974	CCCCGCCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	39	53	-	13.2909	1.29e-05	0.0974	CCCCGCCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	39	53	-	13.2909	1.29e-05	0.0974	CCCCGCCCGCCGCGC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	93	107	-	13.2909	1.29e-05	0.0974	CCCCGCCCGCCGCGC
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.0.0	31	45	+	13.4808	1.29e-05	0.265	TTTGTTCAAAGTCCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	31	45	+	13.4808	1.29e-05	0.265	TTTGTTCAAAGTCCA
HNF4G	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	49	-	13.4808	1.29e-05	0.265	GGGTGACAAAGGTCA
HNF4G	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	66	80	+	13.4808	1.29e-05	0.265	GGGTGACAAAGGTCA
HES5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	93	104	+	9.44828	1.29e-05	0.213	TGGCGCGTGCCT
EGR4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	31	46	+	13.1636	1.29e-05	0.0321	CTCCGCCCGCCCCTTG
EGR4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	69	84	-	13.1636	1.29e-05	0.0321	CTCCGCCCGCCCCTTG
NHLH1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	-	13.7069	1.29e-05	0.0947	AACAGCTGCG
NHLH1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	+	13.7069	1.29e-05	0.0947	AACAGCTGCG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	56	71	-	7.82759	1.29e-05	0.264	CTCCCAGGATTCACAG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	56	71	-	7.82759	1.29e-05	0.264	CTCCCAGGATTCACAG
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	29	42	+	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	29	42	+	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
KLF14	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	30	43	+	12.7586	1.29e-05	0.0185	GACCACGCCTCTTG
KLF14	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	96	109	+	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	6	19	-	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	6	19	-	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
KLF14	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	72	85	-	12.7586	1.29e-05	0.0185	GACCACGCCTCTTG
KLF14	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	73	86	-	12.7586	1.29e-05	0.0185	TGCCCCGCCTCCTC
YY2	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	12	22	+	13.6818	1.29e-05	0.269	GACCGCCATCG
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	93	103	-	13.6818	1.29e-05	0.269	GACCGCCATCG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	93	103	-	13.6818	1.29e-05	0.269	GACCGCCATCG
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	93	103	-	13.6818	1.29e-05	0.269	GACCGCCATCG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	93	103	-	13.6818	1.29e-05	0.269	GACCGCCATCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	+	13.7069	1.29e-05	0.0537	CGCCCGGCGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	-	13.7069	1.29e-05	0.0537	CGCCCGGCGGGGA
TFE3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	12.9796	1.29e-05	0.0744	GACACGTGAC
TFE3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	12.9796	1.29e-05	0.0744	GACACGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	12.9796	1.29e-05	0.0744	GACACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	12.9796	1.29e-05	0.0744	GTCACGTGAT
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	12.9796	1.29e-05	0.0744	GTCACGTGAT
TFE3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	12.9796	1.29e-05	0.0744	GACACGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	12.9796	1.29e-05	0.0744	GACACGTGAC
TFE3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	12.9796	1.29e-05	0.0744	GACACGTGAC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	20	31	+	12.9672	1.29e-05	0.0644	TACCCGGAAGCC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	20	31	+	12.9672	1.29e-05	0.0644	TACCCGGAAGCC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	20	31	+	12.9672	1.29e-05	0.0644	TACCCGGAAGCC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	74	85	+	12.9672	1.29e-05	0.0644	TACCCGGAAGCC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	74	85	+	12.9672	1.29e-05	0.0644	TACCCGGAAGCC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	89	100	+	12.9672	1.29e-05	0.0644	GAACCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	89	100	+	12.9672	1.29e-05	0.0644	GAACCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	89	100	+	12.9672	1.29e-05	0.0644	GAACCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	89	100	+	12.9672	1.29e-05	0.0644	GAACCGGAAGCG
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	71	83	+	13.6066	1.29e-05	0.343	TTGTCTCCCACTT
ERG	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13.5818	1.29e-05	0.0805	ACCGGATGTC
ERG	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13.5818	1.29e-05	0.0805	ACCGGATGTC
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	8	19	+	13.3483	1.29e-05	0.581	TTACTGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	8	19	+	13.3483	1.29e-05	0.581	TTACTGCTGACG
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	8	19	+	13.3483	1.29e-05	0.581	TTACTGCTGACG
Mafb	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	8	19	+	13.3483	1.29e-05	0.581	TTACTGCTGACG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	4	14	-	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	7	17	-	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	20	30	-	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	52	62	-	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	5	15	+	14.1897	1.29e-05	0.03	GGGCGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	5	15	+	14.1897	1.29e-05	0.03	GGGCGGGAGCT
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	5	15	+	14.1897	1.29e-05	0.03	GGGCGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	5	15	+	14.1897	1.29e-05	0.03	GGGCGGGAGCT
E2F6	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	7	17	+	14.1897	1.29e-05	0.03	AGGAGGGAAGC
E2F6	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	17	27	+	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	53	63	+	14.1897	1.29e-05	0.03	AGGAGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	85	95	+	14.1897	1.29e-05	0.03	AGGAGGGAGGG
MNT	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	13.3788	1.29e-05	0.247	AGCACGTGGC
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	13.3788	1.29e-05	0.247	AGCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	13.3788	1.29e-05	0.247	AGCACGTGGC
MNT	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	13.3788	1.29e-05	0.247	AGCACGTGGC
Sox3	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	15	24	+	13.6897	1.29e-05	0.659	CCTTTGTGTT
Sox3	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	91	100	-	13.6897	1.29e-05	0.659	CCTTTGTGTT
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	58	70	+	13.931	1.29e-05	0.757	TTTATTTGCATAG
BHLHE41	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	14.0192	1.29e-05	0.12	CTCACGTGAT
BHLHE41	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	14.0192	1.29e-05	0.12	CTCACGTGAT
FOXP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	82	92	-	14.2121	1.29e-05	0.766	ATGTAAACAGT
FOXP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	82	92	-	14.2121	1.29e-05	0.766	ATGTAAACAGT
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	58	72	-	9.51685	1.29e-05	0.166	GGCCACCAGGGGGCA
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	58	72	-	9.51685	1.29e-05	0.166	GGCCACCAGGGGGCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	26	40	+	12.3443	1.29e-05	0.032	AGCCCCGCCCTCACA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	26	40	+	12.3443	1.29e-05	0.032	AGCCCCGCCCTCACA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	29	43	+	12.3443	1.29e-05	0.032	GGCCCCGCCCCCAGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	29	43	+	12.3443	1.29e-05	0.032	GGCCCCGCCCCCAGG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	29	43	+	12.3443	1.29e-05	0.032	GGCCCCGCCCCCAGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	29	43	+	12.3443	1.29e-05	0.032	GGCCCCGCCCCCAGG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	40	+	13.4342	1.29e-05	0.0164	ACCCCACCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	40	+	13.4342	1.29e-05	0.0164	ACCCCACCCCCT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	29	46	-	-5.88158	1.29e-05	0.024	GCCAGGAAGGAAGAAGGG
SP4	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	81	97	+	9.41818	1.29e-05	0.0126	TCCGCCCCGCCTCCCTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	77	-	13.4098	1.29e-05	0.0902	AACGCGGAAGCG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	77	-	13.4098	1.29e-05	0.0902	AACGCGGAAGCG
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	29	40	+	13.6	1.29e-05	0.217	CACGCCCACCGC
Tcf21	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	65	78	-	11.8026	1.29e-05	0.557	AAAACAGCTGCTTG
STAT1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	5	15	+	14.0545	1.29e-05	0.167	CTTCCAGGAAC
STAT1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	30	40	+	14.0545	1.29e-05	0.167	CTTCCAGGAAC
STAT1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	85	-	14.0545	1.29e-05	0.167	CTTCCAGGAAC
STAT1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	110	-	14.0545	1.29e-05	0.167	CTTCCAGGAAC
SP2	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	31	45	+	13.5172	1.29e-05	0.00519	TCTCCGCCCCGGCCC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	89	103	+	13.5172	1.29e-05	0.00519	CCTCCACCCCTCCCC
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	12	26	-	13.5172	1.29e-05	0.00519	CCTCCACCCCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	28	42	-	13.5172	1.29e-05	0.00519	GCACCGCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	28	42	-	13.5172	1.29e-05	0.00519	GCACCGCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	49	63	-	13.5172	1.29e-05	0.00519	CGCCCGCCCCACCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	49	63	-	13.5172	1.29e-05	0.00519	CGCCCGCCCCACCCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	66	80	-	13.5172	1.29e-05	0.00519	TCCCCTCCTCCCTCT
SP2	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	70	84	-	13.5172	1.29e-05	0.00519	TCTCCGCCCCGGCCC
Myog	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	46	+	14.1837	1.29e-05	0.0913	AGCAGCTGCGA
Myog	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	74	+	14.1837	1.29e-05	0.0913	AGCAGCTGCGA
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	79	89	-	14.1837	1.29e-05	0.0913	CGCAGCTGCGG
HES5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	17	-	9.39655	1.29e-05	0.213	CGGCACGTGCGC
HES5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	40	-	9.39655	1.29e-05	0.213	CGGCACGTGCGC
HES5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	75	86	+	9.39655	1.29e-05	0.213	CGGCACGTGCGC
HES5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	98	109	+	9.39655	1.29e-05	0.213	CGGCACGTGCGC
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	26	36	+	14.1633	1.29e-05	0.112	GGCAGCTGGCG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	26	36	+	14.1633	1.29e-05	0.112	GGCAGCTGGCG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	-	12.5714	1.29e-05	0.076	GCTTACGTCATC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	-	12.5714	1.29e-05	0.076	GCTTACGTCATC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	-	12.5714	1.29e-05	0.076	GCTTACGTCATC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	-	12.5714	1.29e-05	0.076	GCTTACGTCATC
Foxk1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	53	69	-	13.5974	1.29e-05	1	TCTCTGTAAACAAACCG
SP1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	5	15	+	13.8462	1.3e-05	0.0058	CCCCCACCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	5	15	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	26	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	26	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	17	27	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	17	27	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	10	20	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	22	32	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	37	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	29	39	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	20	30	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	30	40	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	30	40	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	30	40	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	30	40	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	50	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	32	42	-	13.8462	1.3e-05	0.0058	CCCCCACCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	44	54	+	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	45	55	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	47	57	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	47	57	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	44	54	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	47	57	-	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	70	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	70	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	61	71	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	61	71	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	61	71	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	61	71	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	61	71	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	53	63	-	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	65	75	+	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	65	75	+	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	57	67	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	57	67	-	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	61	71	-	13.8462	1.3e-05	0.0058	TCCCCTCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	65	75	-	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	109	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	109	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	109	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	109	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	109	+	13.8462	1.3e-05	0.0058	CTCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	102	112	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	102	112	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	102	112	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	102	112	+	13.8462	1.3e-05	0.0058	GCCCCGCCCTG
SP1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	104	114	-	13.8462	1.3e-05	0.0058	CTCCCACCCCC
Crem	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	52	61	+	13.6066	1.3e-05	0.183	GATGACGTAG
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	54	63	-	13.6066	1.3e-05	0.183	GATGACGTAG
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	54	63	-	13.6066	1.3e-05	0.183	GATGACGTAG
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	54	63	-	13.6066	1.3e-05	0.183	GATGACGTAG
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	54	63	-	13.6066	1.3e-05	0.183	GATGACGTAG
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	54	63	-	13.6066	1.3e-05	0.183	GATGACGTAG
VENTX	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	5	13	-	13.0638	1.3e-05	1	AGCGATTAG
VENTX	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	102	110	+	13.0638	1.3e-05	1	AGCGATTAG
HOXC12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	86	+	13.8909	1.3e-05	1	GGTCATAAAAA
HOXC12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	86	+	13.8909	1.3e-05	1	GGTCATAAAAA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	31	44	+	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	31	44	+	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	31	44	+	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	31	44	+	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	31	44	+	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	78	91	+	12.7414	1.3e-05	0.0185	TGCCCCGCCCCTGC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	8	21	-	12.7414	1.3e-05	0.0185	TGCCCCGCCCCTGC
KLF14	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	71	84	-	12.7414	1.3e-05	0.0185	TTCCCCGCCCCCCT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	16	29	+	12.1571	1.3e-05	0.0899	TTCTGACGTCATGG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	16	29	+	12.1571	1.3e-05	0.0899	TTCTGACGTCATGG
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	17	30	+	12.1571	1.3e-05	0.0899	TTCTGACGTCACAG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	32	45	-	13.4038	1.3e-05	0.0089	CACCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	32	45	-	13.4038	1.3e-05	0.0089	CACCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	73	+	13.4038	1.3e-05	0.0089	CTCCCACCCCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	73	+	13.4038	1.3e-05	0.0089	CTCCCACCCCCAGG
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	70	83	+	13.4038	1.3e-05	0.0089	CACCCACCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	70	83	+	13.4038	1.3e-05	0.0089	AGGCCTCCCCCGCA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	33	47	-	12.1	1.3e-05	0.0969	CCCCACCCGCTGCTG
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	55	68	+	13.2241	1.3e-05	0.0959	GTTTCCACAGAAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	55	68	+	13.2241	1.3e-05	0.0959	GTTTCCACAGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	83	96	+	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	83	96	+	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	83	96	+	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	83	96	+	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	83	96	+	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Rfx1	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	19	32	-	13.2241	1.3e-05	0.0959	CCTGCCTTAGCAAC
Creb5	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	+	13.1636	1.3e-05	0.0992	CATTACGTAATT
EGR3	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	8	22	-	11.1379	1.3e-05	0.0286	CCCCACCCCCGCCCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	11	31	-	12.6939	1.3e-05	0.00741	GGAGGGAGCGAGGGAGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	70	90	-	12.6939	1.3e-05	0.00741	AGGGGAGCAAGGGAGGAGACG
RREB1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	47	66	+	8.86239	1.3e-05	0.0401	CCCCTCCCCACCCATCCCGC
CREB3	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	35	48	+	13.1571	1.3e-05	0.196	CAGACACGTCAGCC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	67	80	-	13.1571	1.3e-05	0.196	CAGACACGTCAGCC
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	67	80	-	13.1571	1.3e-05	0.196	CAGACACGTCAGCC
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	67	80	-	13.1571	1.3e-05	0.196	CAGACACGTCAGCC
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	67	80	-	13.1571	1.3e-05	0.196	CAGACACGTCAGCC
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	35	48	+	10.0714	1.3e-05	0.365	TGGCATGATGCCTA
ETV4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.0345	1.3e-05	0.0824	ACCGGAAGCT
ETV4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.0345	1.3e-05	0.0824	ACCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.0345	1.3e-05	0.0824	ACCGGAAGCT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.0345	1.3e-05	0.0824	ACCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.0345	1.3e-05	0.0824	ACCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.0345	1.3e-05	0.0824	ACCGGAAGCT
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	2	16	+	13.8462	1.3e-05	0.0847	CTCTCATCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	2	16	+	13.8462	1.3e-05	0.0847	CTCTCATCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	2	16	+	13.8462	1.3e-05	0.0847	CTCTCATCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	2	16	+	13.8462	1.3e-05	0.0847	CTCTCATCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	51	65	-	13.8462	1.3e-05	0.0847	GGGGCAGCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	51	65	-	13.8462	1.3e-05	0.0847	GGGGCAGCCAATGAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	51	65	-	13.8462	1.3e-05	0.0847	GGGGCAGCCAATGAG
NFYB	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	99	113	-	13.8462	1.3e-05	0.0847	CTCTCATCCAATCAG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	32	43	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	32	43	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	32	43	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	32	43	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	37	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	43	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	72	83	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	78	89	+	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	83	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	90	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	90	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	90	-	13.3934	1.3e-05	0.0902	GCCCCGGAAGTG
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	53	69	-	9.4	1.3e-05	0.0126	CCGGCCCCGGCCACTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	51	66	+	13.1455	1.3e-05	0.0321	CCCCGCCCCCCCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	51	66	+	13.1455	1.3e-05	0.0321	CCCCGCCCCCCCCCCG
EGR2	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	13	23	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	29	39	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	29	39	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	29	39	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	29	39	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	59	69	+	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	77	87	+	13.0345	1.3e-05	0.0586	CCGCCTCCGCA
EGR2	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	78	88	+	13.0345	1.3e-05	0.0586	CCGCGCACGCA
EGR2	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	27	37	-	13.0345	1.3e-05	0.0586	CCGCGCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	28	38	-	13.0345	1.3e-05	0.0586	CCGCCTCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	28	38	-	13.0345	1.3e-05	0.0586	CCGCCTCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	28	38	-	13.0345	1.3e-05	0.0586	CCGCCTCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	28	38	-	13.0345	1.3e-05	0.0586	CCGCCTCCGCA
EGR2	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	30	40	-	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	38	48	-	13.0345	1.3e-05	0.0586	AGGCCCACGCG
EGR2	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	58	68	-	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
EGR2	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	92	102	-	13.0345	1.3e-05	0.0586	ACGCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	10	21	-	13.4211	1.3e-05	0.0164	GACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	10	21	-	13.4211	1.3e-05	0.0164	GACCCCCCCCCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	20	31	-	13.4211	1.3e-05	0.0164	GACCCCCCCCCC
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	84	95	+	13.4211	1.3e-05	0.0164	GACCCCCCCCCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	13	27	-	12.3279	1.3e-05	0.0322	AGCCACGCCTTTTTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	13	+	13.5	1.3e-05	0.01	TCCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	22	+	13.5	1.3e-05	0.01	TCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	22	+	13.5	1.3e-05	0.01	TCCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	22	+	13.5	1.3e-05	0.01	TCCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	22	+	13.5	1.3e-05	0.01	TCCCCGCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	27	37	+	13.5	1.3e-05	0.01	GTCACGCCCAC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	14	27	+	10.3571	1.3e-05	0.0605	GGGTGGGTCGGGGG
BHLHE22	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	14.3636	1.3e-05	1	GCCATATGCT
BHLHE22	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	14.3636	1.3e-05	1	GCCATATGCT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	71	85	-	13.0758	1.3e-05	0.183	GAAAGTGACTCAGGA
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	5	15	-	13.3455	1.3e-05	0.00778	GCACGTGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	28	38	-	13.3455	1.3e-05	0.00778	GCACGTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	65	+	13.3455	1.3e-05	0.00778	GCACGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	65	+	13.3455	1.3e-05	0.00778	GCACGTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	87	+	13.3455	1.3e-05	0.00778	GCACGTGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	110	+	13.3455	1.3e-05	0.00778	GCACGTGCGCG
Gata1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	47	57	+	13.9796	1.3e-05	0.687	TCCTTATCTGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	11	21	-	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	17	27	-	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	90	100	-	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	90	100	-	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	25	35	+	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	25	35	+	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	25	35	+	14.1724	1.3e-05	0.03	GAGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	25	35	+	14.1724	1.3e-05	0.03	GAGCGGGAGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	-	13.5455	1.31e-05	0.0397	CGCCTGGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	-	13.5455	1.31e-05	0.0397	CGCCTGGGGCA
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	+	13.5455	1.31e-05	0.0397	CGCCTGGGGCA
FEV	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FLI1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.9574	1.31e-05	0.079	ACCGGAAGCT
FLI1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.9574	1.31e-05	0.079	ACCGGAAGCT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.9574	1.31e-05	0.079	ACCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.9574	1.31e-05	0.079	ACCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.9574	1.31e-05	0.079	ACCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.9574	1.31e-05	0.079	ACCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
FEV	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.6346	1.31e-05	0.0859	ACCGGAAGCC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	83	-	9	1.31e-05	0.189	AGGCACGTGACT
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	83	-	9	1.31e-05	0.189	AGGCACGTGACT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	37	51	+	13.5	1.31e-05	0.00519	GCTCCTCCTCCTTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	37	51	+	13.5	1.31e-05	0.00519	GCTCCTCCTCCTTGC
SP2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	84	+	13.5	1.31e-05	0.00519	GCCCCGCCCCAGAGA
SP2	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	71	85	+	13.5	1.31e-05	0.00519	GCTCCTCCCCTTTGC
SP2	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	89	+	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	81	95	+	13.5	1.31e-05	0.00519	CTTCCGCCTCCGGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	81	95	+	13.5	1.31e-05	0.00519	CTTCCGCCTCCGGCG
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	13	27	-	13.5	1.31e-05	0.00519	CCCCCACCCCCACCA
SP2	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	34	-	13.5	1.31e-05	0.00519	CTTCCGCCTCCGGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	26	40	-	13.5	1.31e-05	0.00519	GCCCCACCCACATCC
SP2	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	30	44	-	13.5	1.31e-05	0.00519	GCTCCTCCCCTTTGC
SP2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	31	45	-	13.5	1.31e-05	0.00519	GCCCCGCCCCAGAGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	54	68	-	13.5	1.31e-05	0.00519	GCTCCTCCCACCGCC
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	33	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	33	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	33	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	33	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	39	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	87	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	93	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	107	+	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	17	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	17	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	31	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	31	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	31	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	31	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	37	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	30	39	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	30	39	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	30	39	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	30	39	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	30	39	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	85	-	14	1.31e-05	0.189	CCACGTGGCC
Myc	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	91	-	14	1.31e-05	0.189	CCACGTGGCC
TP73	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	65	82	-	12.5	1.31e-05	0.578	CACAAGCCCGGGCTTGTC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	4	23	-	8.84404	1.31e-05	0.0401	ACACCCCCAACCCACTTCCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	48	+	8.84404	1.31e-05	0.0401	CCCCCCCCCCCCCCCGCACG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	5	19	-	12.8571	1.31e-05	0.0846	TCAGGTCGGAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	5	19	-	12.8571	1.31e-05	0.0846	TCAGGTCGGAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	5	19	-	12.8571	1.31e-05	0.0846	TCAGGTCGGAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	5	19	-	12.8571	1.31e-05	0.0846	TCAGGTCGGAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	5	19	-	12.8571	1.31e-05	0.0846	TCAGGTCGGAGGCCG
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	37	49	-	12.431	1.31e-05	0.108	AACCGGGAAGTAG
ELF3	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	66	78	+	12.431	1.31e-05	0.108	AACCGGGAAGTAG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	2	18	+	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	2	18	+	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	7	23	-	9.38182	1.31e-05	0.0126	CAGACCCCCCCCCCAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	7	23	-	9.38182	1.31e-05	0.0126	CAGACCCCCCCCCCAGC
SP4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	54	70	+	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	45	61	-	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	45	61	-	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	97	113	-	9.38182	1.31e-05	0.0126	GCGCCCACGCCCCTTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	15	25	+	13.2846	1.31e-05	0.01	GCCACACCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	15	25	+	13.2846	1.31e-05	0.01	GCCACACCCTC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	79	89	+	13.2846	1.31e-05	0.01	GCCACACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	29	39	-	13.2846	1.31e-05	0.01	GCCACACCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	29	39	-	13.2846	1.31e-05	0.01	GCCACACCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	29	39	-	13.2846	1.31e-05	0.01	GCCACACCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	29	39	-	13.2846	1.31e-05	0.01	GCCACACCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	10	19	+	14.1224	1.31e-05	0.00836	TCCCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	43	52	-	14.1224	1.31e-05	0.00836	TCCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	56	65	+	14.1224	1.31e-05	0.00836	TCCCCACCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	99	108	+	14.1224	1.31e-05	0.00836	TCCCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	96	105	-	14.1224	1.31e-05	0.00836	TCCCCACCCT
ELF1	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	41	52	-	13.0727	1.31e-05	0.0763	GACACGGAAGTA
ELF1	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	63	74	+	13.0727	1.31e-05	0.0763	GACACGGAAGTA
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	36	47	-	8.96552	1.31e-05	0.189	TGGCACGAGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	36	47	-	8.96552	1.31e-05	0.189	TGGCACGAGCCC
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	78	89	-	8.96552	1.31e-05	0.189	TGGCACGAGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	78	89	-	8.96552	1.31e-05	0.189	TGGCACGAGCCC
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	93	107	-	13.1712	1.31e-05	0.138	ACATGGCAGAGGGCA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	+	12.5306	1.31e-05	0.076	GGTGACGTAATC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	+	12.5306	1.31e-05	0.076	GGTGACGTAATC
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	79	88	+	12.629	1.31e-05	0.741	TACATTCCTC
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	79	88	+	12.629	1.31e-05	0.741	TACATTCCTC
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	79	88	+	12.629	1.31e-05	0.741	TACATTCCTC
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	79	88	+	12.629	1.31e-05	0.741	TACATTCCTC
PAX9	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	4	20	-	7.2	1.31e-05	0.456	GGCCACGCCTCAGTACG
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	20	30	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	20	30	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	20	30	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	33	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	33	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	28	38	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	85	95	+	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	10	20	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	10	20	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	11	21	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	11	21	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	20	30	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	41	51	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	41	51	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	41	51	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	85	95	-	13.4655	1.31e-05	0.01	ACCCCCCCCCC
Klf12	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	31	45	-	12.3115	1.31e-05	0.0323	AGCCCCGCCCACCCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	31	44	+	13.3846	1.31e-05	0.00893	GCCCTTCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	31	44	+	13.3846	1.31e-05	0.00893	GCCCTTCCCCCACC
EGR1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	34	47	+	13.3846	1.31e-05	0.00893	CCTCCGCCTCCTTC
EGR1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	59	+	13.3846	1.31e-05	0.00893	GTCCCGCCCACTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	70	+	13.3846	1.31e-05	0.00893	CCCCCGCCCTCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	70	+	13.3846	1.31e-05	0.00893	CCCCCGCCCTCGGA
EGR1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	45	58	-	13.3846	1.31e-05	0.00893	CCCCCGCCCTCGGA
EGR1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	56	69	-	13.3846	1.31e-05	0.00893	GTCCCGCCCACTGA
EGR1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	68	81	-	13.3846	1.31e-05	0.00893	CCTCCGCCTCCTTC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	71	84	-	13.3846	1.31e-05	0.00893	GCCCTTCCCCCACC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	59	73	-	13.2545	1.31e-05	0.0974	AGCCTCCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	59	73	-	13.2545	1.31e-05	0.0974	AGCCTCCCGCCGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	87	-	13.2545	1.31e-05	0.0974	CGCCCCCCGCCGGCA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	71	81	+	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	71	81	+	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	71	81	+	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	71	81	+	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	81	-	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	81	-	13.7818	1.31e-05	0.197	ACCCGGAAGCA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	81	-	13.7818	1.31e-05	0.197	ACCCGGAAGCA
RFX2	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	-	10.6	1.31e-05	0.105	GGGAGCCATGGTAACT
SPI1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	30	43	-	8.70909	1.31e-05	0.127	TGAAAAGGGAAGTA
SPI1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	72	85	+	8.70909	1.31e-05	0.127	TGAAAAGGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	74	87	-	8.70909	1.31e-05	0.127	AGAATGAGGAAGAA
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	74	87	-	8.70909	1.31e-05	0.127	AGAATGAGGAAGAA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	85	99	+	13.4091	1.31e-05	0.0563	TCCTCGCGGGCTCCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	85	99	+	13.4091	1.31e-05	0.0563	TCCTCGCGGGCTCCG
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	28	42	+	13.0909	1.31e-05	0.193	CTGCTTTCCTTTTCT
ELK4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	37	-	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	54	64	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	54	64	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	54	64	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	56	-	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	57	67	+	13.9636	1.32e-05	0.035	CTGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	57	67	+	13.9636	1.32e-05	0.035	CTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	57	67	+	13.9636	1.32e-05	0.035	CTGCTTCCGGG
ELK4	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	59	69	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	78	88	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	78	88	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	78	88	+	13.9636	1.32e-05	0.035	TCACTTCCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	111	-	13.9636	1.32e-05	0.035	TCACTTCCGCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	44	64	-	12.6735	1.32e-05	0.00749	CGAGGAGGAGGGGCGATGGGC
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	26	39	-	10.9574	1.32e-05	0.0959	GCCGCCCCGCGGAG
ELK3	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	13.6034	1.32e-05	0.0572	CCCGGAAGTA
ELK3	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	13.6034	1.32e-05	0.0572	CCCGGAAGTA
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	19	32	+	14.0385	1.32e-05	0.136	AGGAAATGACTCAA
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	23	36	-	14.0385	1.32e-05	0.136	AGGAAATGACTCAA
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	79	92	+	14.0385	1.32e-05	0.136	AGGAAATGACTCAA
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	83	96	-	14.0385	1.32e-05	0.136	AGGAAATGACTCAA
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr15:91208884..91208998,-__2162.1.0.0	45	60	+	-1.55769	1.32e-05	0.317	CGAAGCCCCACGACGC
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	42	57	-	-1.55769	1.32e-05	0.317	CGAAGCCCCACGACGC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	21	32	+	12.9508	1.32e-05	0.0644	ACACCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	25	36	+	12.9508	1.32e-05	0.0644	ACACCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	56	67	+	12.9508	1.32e-05	0.0644	ACACCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	56	67	+	12.9508	1.32e-05	0.0644	ACACCGGAAGTC
EGR4	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	6	21	+	13.1273	1.32e-05	0.0321	CTCCGCCCTCCCCCTC
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	13	28	-	13.1273	1.32e-05	0.0321	CCCCCCCCCCGCAGTA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	26	41	-	13.1273	1.32e-05	0.0321	CACCGCCCCCCCCCAC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	87	102	+	13.1273	1.32e-05	0.0321	CCCCCCCCCCGCAGTA
EGR4	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	94	109	-	13.1273	1.32e-05	0.0321	CTCCGCCCTCCCCCTC
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	35	49	-	13.8269	1.32e-05	0.085	AACACAGCCAATCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	60	76	+	9.36364	1.32e-05	0.0126	CCTGCCCCGCCCCACTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	60	76	+	9.36364	1.32e-05	0.0126	CCTGCCCCGCCCCACTG
Mitf	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	11	+	12.1837	1.32e-05	0.118	CGTCACGTGC
Mitf	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	25	34	-	12.1837	1.32e-05	0.118	CGTCACGTGC
Mitf	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	90	+	12.1837	1.32e-05	0.118	CGTCACGTGC
Mitf	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	104	113	-	12.1837	1.32e-05	0.118	CGTCACGTGC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	13.4894	1.32e-05	0.0416	ACCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	13.4894	1.32e-05	0.0416	ACCGGAACTG
EHF	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	76	-	13.377	1.32e-05	0.0902	GAAGCGGAAGTA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	12	26	-	12.0714	1.32e-05	0.0969	GCCGCCCCGCCGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	12	26	-	12.0714	1.32e-05	0.0969	GCCGCCCCGCCGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	12	26	-	12.0714	1.32e-05	0.0969	GCCGCCCCGCCGGGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	12	26	-	12.0714	1.32e-05	0.0969	GCCGCCCCGCCGGGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	32	46	-	12.0714	1.32e-05	0.0969	CGCGCCCTGCCGCGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	67	81	+	12.0714	1.32e-05	0.0969	CGCGCCCTGCCGCGC
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	23	37	-	12.5082	1.32e-05	0.291	GTGACTCAGCTGCGA
RORA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.1	53	66	-	12.4607	1.32e-05	0.76	AGACATTAGGTCAA
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.0.0	53	66	-	12.4607	1.32e-05	0.76	AGACATTAGGTCAA
RORA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.0	53	66	-	12.4607	1.32e-05	0.76	AGACATTAGGTCAA
INSM1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	40	51	+	13.6837	1.32e-05	0.133	GGCCTGGGGGCT
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	80	90	+	14	1.32e-05	0.167	ATTCCAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	80	90	+	14	1.32e-05	0.167	ATTCCAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	100	110	+	14	1.32e-05	0.167	ATTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	100	110	+	14	1.32e-05	0.167	ATTCCAGGAAG
EGR2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	41	51	-	13.0172	1.32e-05	0.0586	ACGCTCACGCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	30	44	-	13.1622	1.32e-05	0.138	CCGGGGCGGAGGGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	34	48	+	13.1622	1.32e-05	0.138	CCGGGGCGGAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	34	48	+	13.1622	1.32e-05	0.138	CCGGGGCGGAGGGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	8	25	-	-5.94737	1.32e-05	0.0244	GGGGAGAGGGGAGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	8	25	-	-5.94737	1.32e-05	0.0244	GGGGAGAGGGGAGGGAGG
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	+	14.4043	1.32e-05	0.169	TGTGACTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	-	14.4043	1.32e-05	0.169	TGTGACTCACC
JUND	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	-	14.4043	1.32e-05	0.169	TATGACTCATT
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	32	46	+	13.4828	1.32e-05	0.00522	TCCCCTCCTCCCCAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	38	52	+	13.4828	1.32e-05	0.00522	GCCCCGCCTCAAGTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	38	52	+	13.4828	1.32e-05	0.00522	GCCCCGCCTCAAGTC
SP2	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	67	81	+	13.4828	1.32e-05	0.00522	GGCCTGCCCCTCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	11	25	-	13.4828	1.32e-05	0.00522	GCCCCGCCCCAGGAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	11	25	-	13.4828	1.32e-05	0.00522	GCCCCGCCCCAGGAA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	11	25	-	13.4828	1.32e-05	0.00522	GCCCCGCCCCAGGAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	11	25	-	13.4828	1.32e-05	0.00522	GCCCCGCCCCAGGAA
SP2	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	34	48	-	13.4828	1.32e-05	0.00522	GGCCTGCCCCTCCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	52	71	+	8.81651	1.32e-05	0.0401	CCACCCCTCTCCCCAACAGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	-	13.6552	1.32e-05	0.0537	TGCCCAGAGGGCC
IRF1	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	20	40	-	12.6613	1.32e-05	0.126	CGCTTCTTCCGCTTTCTCGTC
IRF1	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	75	95	+	12.6613	1.32e-05	0.126	CGCTTCTTCCGCTTTCTCGTC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	4	13	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	14	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	14	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	15	24	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	8	17	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	23	32	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	25	34	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	25	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	25	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	29	38	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	31	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	31	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	32	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	32	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	45	54	+	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	64	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	64	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	70	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	69	78	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	81	90	-	13.6122	1.32e-05	0.0108	TGGGAGGGGC
Myog	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	32	+	14.1633	1.32e-05	0.0913	GGCAGCTGCCA
Myog	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	40	+	14.1633	1.32e-05	0.0913	AGCAGCTGGGC
Myog	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	31	-	14.1633	1.32e-05	0.0913	GGCAGCTGCCA
Myog	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	45	-	14.1633	1.32e-05	0.0913	GGCAGCTGCCA
Myog	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	104	114	-	14.1633	1.32e-05	0.0913	GGCAGCTGCCA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	94	104	-	13.7551	1.32e-05	0.672	ATTGCATCATC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	69	82	+	12.7069	1.32e-05	0.0188	TCCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	69	82	+	12.7069	1.32e-05	0.0188	TCCCCCGCCCCCTC
RXRB	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	17	-	6.69091	1.32e-05	0.378	GGTGTCAGAGGTTA
MAFK	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	91	105	-	13.8222	1.32e-05	0.567	CTGACTCAGCAGCAA
TCF4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	26	+	13.7755	1.32e-05	0.317	TGCACCTGCG
TCF4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	9	18	-	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	80	89	+	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	97	106	+	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	97	106	+	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	97	106	+	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	97	106	+	13.7755	1.32e-05	0.317	CACACCTGGA
TCF4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	98	-	13.7755	1.32e-05	0.317	TGCACCTGCG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	45	55	+	14.0204	1.32e-05	0.163	TTTCTAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	45	55	+	14.0204	1.32e-05	0.163	TTTCTAGGAAG
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	77	90	-	11.75	1.32e-05	0.557	GCGACAGCTGTACA
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	-	13.8714	1.32e-05	0.148	GGCAGCTGTT
Ascl2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	+	13.8714	1.32e-05	0.148	GGCAGCTGTT
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	97	111	+	13.0455	1.32e-05	0.183	CCAGGTGACCCAGCA
ELF1	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	56	67	+	13.0545	1.32e-05	0.0763	ATCCAGGAAGTG
ELF1	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	48	59	-	13.0545	1.32e-05	0.0763	ATCCAGGAAGTG
TBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	53	67	+	12.7917	1.32e-05	0.281	GTATATAAAGCATGG
TBP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	53	67	+	12.7917	1.32e-05	0.281	GTATATAAAGCATGG
TBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	53	67	+	12.7917	1.32e-05	0.281	GTATATAAAGCATGG
TBP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	53	67	+	12.7917	1.32e-05	0.281	GTATATAAAGCATGG
TBP	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	48	62	-	12.7917	1.32e-05	0.281	GTATATAAAGCATGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	58	72	-	11.0862	1.32e-05	0.0287	CCCCGCCCCCTCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	58	72	-	11.0862	1.32e-05	0.0287	CCCCGCCCCCTCCCT
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	+	13.4545	1.32e-05	0.0893	TCCCCGCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	+	13.4545	1.32e-05	0.0893	TCCCCGCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	+	13.4545	1.32e-05	0.0893	TCCCCGCGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	+	13.4545	1.32e-05	0.0893	CGCCCCCGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	-	13.4545	1.32e-05	0.0893	AGCCCGGAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	-	13.4545	1.32e-05	0.0893	AGCCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	3	13	-	13.8909	1.33e-05	0.063	CGCCTGGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	3	13	-	13.8909	1.33e-05	0.063	CGCCTGGGGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	31	41	+	13.8909	1.33e-05	0.063	CGCCTGGGGCA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	54	65	-	13.6724	1.33e-05	0.365	GCGCCCACCCAC
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	54	65	-	13.6724	1.33e-05	0.365	GCGCCCACCCAC
ELF4	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	69	80	+	12.9344	1.33e-05	0.0644	GTGCCGGAAGTA
SP3	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	53	63	+	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	16	26	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	16	26	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	33	43	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	33	43	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	33	43	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	51	61	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	51	61	-	13.2602	1.33e-05	0.0101	GACACACCCAC
SP3	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	52	62	-	13.2602	1.33e-05	0.0101	GACACACCCAC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	+	13.4909	1.33e-05	0.0548	CGCCCCGCGGCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	23	34	+	13.4909	1.33e-05	0.0548	CCCCTCCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	+	13.4909	1.33e-05	0.0548	CGCCTCCGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	+	13.4909	1.33e-05	0.0548	CGCCTCCGGGCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	+	13.4909	1.33e-05	0.0548	CGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	-	13.4909	1.33e-05	0.0548	CGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	92	-	13.4909	1.33e-05	0.0548	CCCCTCCAGGCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	-	13.4909	1.33e-05	0.0548	CGCCCCGCGGCG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	59	75	-	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	59	75	-	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	59	75	-	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	59	75	-	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	77	93	+	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	77	93	+	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	77	93	+	6.22727	1.33e-05	0.3	CGGGTCACCCCGGCCCA
NFYA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	3	20	+	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	3	20	+	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	3	20	+	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	3	20	+	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	89	106	+	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	9	26	-	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
NFYA	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	95	112	-	12.8049	1.33e-05	0.0661	CGTCTCTTGATTGGTTGG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	27	+	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	27	+	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	27	+	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	12	22	-	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	12	22	-	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	12	22	-	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	12	22	-	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	15	25	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	15	25	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	15	25	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	17	27	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	18	28	-	13.8269	1.33e-05	0.00586	CTTCCGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	22	32	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	34	44	+	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	33	43	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	33	43	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	33	43	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	33	43	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	71	81	-	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	83	93	+	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	87	97	+	13.8269	1.33e-05	0.00586	CTTCCGCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	90	100	+	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	88	98	-	13.8269	1.33e-05	0.00586	GGCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	103	113	+	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	103	113	+	13.8269	1.33e-05	0.00586	CCTCCGCCTCC
PAX1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	30	46	-	10.6727	1.33e-05	0.48	AGACCCGCTTCATTGAC
PAX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	65	81	-	10.6727	1.33e-05	0.48	AGACCCGCTTCATTGAC
PAX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	65	81	-	10.6727	1.33e-05	0.48	AGACCCGCTTCATTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	-	13.7705	1.33e-05	0.333	AGCACGTGTG
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	-	13.7705	1.33e-05	0.333	AGCACGTGTG
CDX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	49	59	-	14	1.33e-05	1	GAGCAATAAAG
CDX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	49	59	-	14	1.33e-05	1	GAGCAATAAAG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	14	27	+	13.3654	1.33e-05	0.00902	CGCCCACCTCCTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	32	45	-	13.3654	1.33e-05	0.00902	CCGCCGCCTCCTTC
ZIC1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	77	90	-	10.9362	1.33e-05	0.0959	TCCACCCCACTGCG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	18	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	18	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	29	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	31	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	52	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	52	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	32	43	-	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	32	43	-	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	63	+	13.4079	1.33e-05	0.0164	CCCCCGCCCCTT
SP8	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	73	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	52	63	-	13.4079	1.33e-05	0.0164	CCCCCGCCCCTT
SP8	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	81	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	83	+	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	63	74	-	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	97	108	-	13.4079	1.33e-05	0.0164	CCCCCTCCCCCT
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	16	35	-	8.79817	1.33e-05	0.0401	ACCCCCCCCGCCCCCCCGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	50	69	-	8.79817	1.33e-05	0.0401	AACCAAAACAGCAACACAGT
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	80	99	+	8.79817	1.33e-05	0.0401	ACCCCCCCCGCCCCCCCGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	24	36	-	13.5902	1.33e-05	0.0528	AGCCTGGAGGGCA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	+	13.5902	1.33e-05	0.0528	CGCCCCCCGGGGT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	-	13.5902	1.33e-05	0.0528	CGCCCCCCGGGGT
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	70	80	-	13.8936	1.33e-05	0.971	TAAGCCAATCA
DUX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	70	80	-	13.8936	1.33e-05	0.971	TAAGCCAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	70	80	-	13.8936	1.33e-05	0.971	TAAGCCAATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	70	80	-	13.8936	1.33e-05	0.971	TAAGCCAATCA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	15	24	-	12.6162	1.33e-05	0.109	TGAGGGGGAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	35	44	+	12.6162	1.33e-05	0.109	TGAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	64	73	-	12.6162	1.33e-05	0.109	CTAGGGGGAG
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	71	80	-	12.6162	1.33e-05	0.109	TGAGGGGGAG
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	5	17	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	5	17	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	5	17	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	5	17	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	5	17	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	25	37	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	25	37	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	25	37	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	25	37	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	25	37	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	53	65	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	53	65	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	53	65	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	53	65	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	53	65	-	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
ELF3	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	78	90	+	12.3966	1.33e-05	0.108	ACGCCGGAAGTGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	58	+	13.7049	1.33e-05	0.0626	CGCCCCCAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	58	+	13.7049	1.33e-05	0.0626	CGCCCCCAGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	58	+	13.7049	1.33e-05	0.0626	CGCCCCCAGGGGG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	57	69	-	13.7049	1.33e-05	0.0626	CGCCCCCAGGGGG
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	58	71	-	12.3939	1.33e-05	0.246	CAGCCACGTCAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	41	-	12.6531	1.33e-05	0.00755	GGGGCGGGGGGGGGGGGGTGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	77	97	-	12.6531	1.33e-05	0.00755	CGAGGAGGGTGAGTGGGAAGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	18	38	+	12.6531	1.33e-05	0.00755	CGAGGAGGGTGAGTGGGAAGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	19	39	+	12.6531	1.33e-05	0.00755	GGGGCGGGAGGGGGAAGGGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	28	48	+	12.6531	1.33e-05	0.00755	AGGGGCGGAGGCGCGGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	28	48	+	12.6531	1.33e-05	0.00755	AGGGGCGGAGGCGCGGAAGGG
NFKB2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	2	14	-	12.6818	1.33e-05	0.214	GAGGGATTCCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	101	113	+	12.6818	1.33e-05	0.214	GAGGGATTCCCCC
KLF14	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	33	46	+	12.6897	1.33e-05	0.0188	GCCCACGCCCATCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	34	47	+	12.6897	1.33e-05	0.0188	AACCCCGCCCACAA
KLF14	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	69	82	-	12.6897	1.33e-05	0.0188	GCCCACGCCCATCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	17	33	+	9.32727	1.33e-05	0.0127	CTAACCCCCCCCCCGCT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	17	33	+	9.32727	1.33e-05	0.0127	CTAACCCCCCCCCCGCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	38	54	-	9.32727	1.33e-05	0.0127	CTAACCCCCCCCCCGCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	38	54	-	9.32727	1.33e-05	0.0127	CTAACCCCCCCCCCGCT
SP4	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	82	98	-	9.32727	1.33e-05	0.0127	CTAACCCCCCCCCCGCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	13	27	-	12.2787	1.33e-05	0.0324	GGACACACCCACCTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	13	27	-	12.2787	1.33e-05	0.0324	GGACACACCCACCTC
HOXC13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	27	37	-	13.8065	1.33e-05	1	GCTCGTAAAGA
HOXC13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	47	57	-	13.8065	1.33e-05	1	GCTCGTAAAGA
HOXC13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	75	85	-	13.8065	1.33e-05	1	GCTCGTAAAGA
POU1F1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	45	58	+	13.3276	1.33e-05	0.835	CCTATGCAAATAAG
POU1F1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	57	70	-	13.3276	1.33e-05	0.835	CCTATGCAAATAAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	78	88	+	13.8525	1.33e-05	0.0326	GCGGAAGTCGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	78	88	+	13.8525	1.33e-05	0.0326	GCGGAAGTCGC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	82	92	-	13.8525	1.33e-05	0.0326	CCGGAAATGGG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	-	13.3163	1.33e-05	0.0857	CGCCTTGGGGCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	+	13.3163	1.33e-05	0.0857	CGCCTTGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	+	13.3163	1.33e-05	0.0857	CGCCCCCGGCCA
MYF6	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	+	13.6515	1.33e-05	1	AGCAGCTGTT
MYF6	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	+	13.6515	1.33e-05	1	AGCAGCTGTT
MYF6	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	-	13.6515	1.33e-05	1	AGCAGCTGTT
NFE2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	+	13	1.33e-05	0.184	AGTGAGTCATC
NFE2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	-	13	1.33e-05	0.184	AGTGAGTCATC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	50	67	+	-5.98684	1.34e-05	0.0246	GGAAAAGAGGAAGCACGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	50	67	+	-5.98684	1.34e-05	0.0246	GGAAAAGAGGAAGCACGT
SP2	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	18	32	+	13.4655	1.34e-05	0.00524	CTCCCTCCCTCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	61	75	+	13.4655	1.34e-05	0.00524	TCCCCTCCCTCCCGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	61	75	+	13.4655	1.34e-05	0.00524	TCCCCTCCCTCCCGG
SP2	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	25	39	-	13.4655	1.34e-05	0.00524	GCACCGCCCCCTTTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	59	73	-	13.4655	1.34e-05	0.00524	TCCCTGCCTCCTCCC
SP2	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	83	97	-	13.4655	1.34e-05	0.00524	CTCCCTCCCTCCTCC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	61	-	12.8143	1.34e-05	0.0846	CCGGAGCAAAGGTCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	61	-	12.8143	1.34e-05	0.0846	CCGGAGCAAAGGTCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	61	-	12.8143	1.34e-05	0.0846	CCGGAGCAAAGGTCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	61	-	12.8143	1.34e-05	0.0846	CCGGAGCAAAGGTCG
ZBTB33	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	72	86	-	13.3788	1.34e-05	0.0563	ATCTCGCGGCGCTTG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	29	43	+	13.3788	1.34e-05	0.0563	ATCTCGCGGCGCTTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	29	43	+	13.3788	1.34e-05	0.0563	ATCTCGCGGCGCTTG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	29	43	+	13.3788	1.34e-05	0.0563	ATCTCGCGGCGCTTG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	29	43	+	13.3788	1.34e-05	0.0563	ATCTCGCGGCGCTTG
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	100	114	-	13.3269	1.34e-05	0.793	CCCGCCTATGGCGCA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	100	114	-	13.3269	1.34e-05	0.793	CCCGCCTATGGCGCA
CENPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	100	114	-	13.3269	1.34e-05	0.793	CCCGCCTATGGCGCA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	100	114	-	13.3269	1.34e-05	0.793	CCCGCCTATGGCGCA
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	17	27	+	13.7273	1.34e-05	0.0397	AACCACACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	25	35	+	13.7273	1.34e-05	0.0397	TGCCCCGCCCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	61	71	+	13.7273	1.34e-05	0.0397	AACCACACCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	30	40	-	13.7273	1.34e-05	0.0397	TGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	30	40	-	13.7273	1.34e-05	0.0397	TGCCCCGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	42	52	-	13.7273	1.34e-05	0.0397	TGCCCCGCCCA
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	44	54	-	13.7273	1.34e-05	0.0397	AACCACACCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	88	98	-	13.7273	1.34e-05	0.0397	AACCACACCCC
Nkx2-5(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	32	42	-	13.7636	1.34e-05	0.721	ATCCACTCAGG
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	12.7959	1.34e-05	0.0744	GCCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	12.7959	1.34e-05	0.0744	GCCACGTGCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	33	43	+	13.252	1.34e-05	0.0101	CCCACACCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	33	43	+	13.252	1.34e-05	0.0101	CCCACACCCCA
Pax6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	34	47	+	13.2222	1.34e-05	1	CTTACGCATGAACG
Pax6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	34	47	+	13.2222	1.34e-05	1	CTTACGCATGAACG
JUNB	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	17	27	+	14.4082	1.34e-05	0.124	CGATGACTCAC
Twist2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	13.3934	1.34e-05	1	ACCATATGTA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	51	62	+	12.918	1.34e-05	0.0644	GCTCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	51	62	+	12.918	1.34e-05	0.0644	GCTCCGGAAGTG
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	13.3636	1.34e-05	0.189	ACCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	13.3636	1.34e-05	0.189	ACCACGTGAC
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	+	11.8073	1.34e-05	0.591	TGACAGCCGTCC
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	+	11.8073	1.34e-05	0.591	TGACAGCCGTCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	+	13.5273	1.34e-05	0.0397	TGCCCGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	+	13.5273	1.34e-05	0.0397	TGCCCGAGGCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	+	13.5273	1.34e-05	0.0397	TGCCCGAGGCC
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	-	13.5273	1.34e-05	0.0397	CGCCTCAGGGA
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	+	13.5273	1.34e-05	0.0397	CGCCTCAGGGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	28	47	-	8.77064	1.34e-05	0.0401	CAACACACCAGCAACCACAA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	28	47	-	8.77064	1.34e-05	0.0401	CAACACACCAGCAACCACAA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	28	47	-	8.77064	1.34e-05	0.0401	CAACACACCAGCAACCACAA
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	38	51	-	12.1475	1.34e-05	0.176	AACCTCCCGCGGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	38	51	-	12.1475	1.34e-05	0.176	AACCTCCCGCGGCG
GLI2	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	4	15	-	13.3966	1.34e-05	0.33	GTGACCACGCAG
SPIC	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	50	63	+	13.338	1.34e-05	0.136	AAGAAGGGGAAGTT
SPIC	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	52	65	-	13.338	1.34e-05	0.136	AAGAAGGGGAAGTT
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	15	28	-	13.3462	1.34e-05	0.00911	GCTCCTCCGCCTCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	53	67	+	12.0286	1.34e-05	0.0969	GACCTCCTCCTGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	53	67	+	12.0286	1.34e-05	0.0969	GACCTCCTCCTGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	86	100	+	12.0286	1.34e-05	0.0969	GACCTCCTCCTGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	86	100	+	12.0286	1.34e-05	0.0969	GACCTCCTCCTGGGC
EGR3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	58	72	-	11.0517	1.34e-05	0.0287	CCACGCCCCCCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	64	78	-	11.0517	1.34e-05	0.0287	CCACGCCCCCCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	7	21	+	11.0517	1.34e-05	0.0287	CCACGCCCCCCCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	37	51	+	11.0517	1.34e-05	0.0287	CCACGCCCCCCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	43	57	+	11.0517	1.34e-05	0.0287	CCACGCCCCCCCCCC
KLF14	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	9	22	+	12.6724	1.34e-05	0.0188	GACCCCGCCTCCCT
KLF14	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	94	107	+	12.6724	1.34e-05	0.0188	GACCCCGCCTCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	8	21	-	12.6724	1.34e-05	0.0188	GACCCCGCCTCCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	8	21	-	12.6724	1.34e-05	0.0188	GACCCCGCCTCCCT
KLF14	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	93	106	-	12.6724	1.34e-05	0.0188	GACCCCGCCTCCCT
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	32	43	+	12.4286	1.34e-05	0.0775	GATGATGTCATG
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	24	38	+	13.8936	1.34e-05	0.299	GCAGATGACGTCAGC
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	43	-	13.8936	1.34e-05	0.299	GCAGATGACGTCAGC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	91	-	13.8936	1.34e-05	0.299	GCAGATGACGTCAGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	+	13.6885	1.34e-05	0.0626	TGCCCCCCGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	+	13.6885	1.34e-05	0.0626	TGCCCCCCGGGGC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	-	13.6885	1.34e-05	0.0626	TGCCCCCCGGGGC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	+	13.6885	1.34e-05	0.0626	TGCCCCCCGGGGC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	-	13.6885	1.34e-05	0.0626	TGCCCCCCGGGGC
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	20	29	-	13.7049	1.34e-05	0.389	GACACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	20	29	-	13.7049	1.34e-05	0.389	GACACCTGGC
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	20	29	-	13.7049	1.34e-05	0.389	GACACCTGGC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	103	-	13.541	1.35e-05	0.343	CTGCCTCACACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	103	-	13.541	1.35e-05	0.343	CTGCCTCACACCC
RREB1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	42	61	-	8.76147	1.35e-05	0.0401	CCCGCACACACCCACTCGCC
GLIS1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	17	32	+	-1.65385	1.35e-05	0.317	CCGCCCCCCCCGACGG
GLIS1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	83	98	-	-1.65385	1.35e-05	0.317	CCGCCCCCCCCGACGG
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	18	28	-	13.7755	1.35e-05	0.0829	ACCACATGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	18	28	-	13.7755	1.35e-05	0.0829	ACCACATGACC
USF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	51	+	13.7755	1.35e-05	0.0829	GTCAGGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	44	54	+	13.7755	1.35e-05	0.0829	ACCACATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	44	54	+	13.7755	1.35e-05	0.0829	ACCACATGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	57	67	+	13.7755	1.35e-05	0.0829	ACCACATGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	57	67	+	13.7755	1.35e-05	0.0829	ACCACATGACC
EGR4	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	44	59	+	13.0909	1.35e-05	0.0327	GCCCGCCCTCCCATCA
REST	WILDTYPE__Enhancer.flip.sense__chr5:25910755..25910869,+__1911.1.0.0	16	36	-	9.33673	1.35e-05	0.198	TGAAGCTCCTTGGCCAGCTTT
REST	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	70	90	-	9.33673	1.35e-05	0.198	TGAAGCTCCTTGGCCAGCTTT
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	25	45	+	9.33673	1.35e-05	0.198	TGAAGCTCCTTGGCCAGCTTT
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	25	45	+	9.33673	1.35e-05	0.198	TGAAGCTCCTTGGCCAGCTTT
REST	FLIPPED__Enhancer.flip.antisense__chr5:25910755..25910869,-__2881.1.0.0	79	99	+	9.33673	1.35e-05	0.198	TGAAGCTCCTTGGCCAGCTTT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	20	40	-	12.6327	1.35e-05	0.0076	GAAGCAGGAAGAGTCAGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	77	97	-	12.6327	1.35e-05	0.0076	GGAGGGAGAGGCGCAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	77	97	-	12.6327	1.35e-05	0.0076	GGAGGGAGAGGCGCAGGAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	85	105	-	12.6327	1.35e-05	0.0076	GGAGCAGGACTTGGATGGTGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	22	42	+	12.6327	1.35e-05	0.0076	GAAGGCGGAGGGATGGGAACG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	31	51	+	12.6327	1.35e-05	0.0076	GAAGCAGGAAGAGTCAGGAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	54	74	+	12.6327	1.35e-05	0.0076	GGAGCAGGACTTGGATGGTGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	55	75	+	12.6327	1.35e-05	0.0076	AGGGGTGGAGGAAGCAGAAAA
SPDEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	95	-	13.7636	1.35e-05	0.197	GCCCGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	95	-	13.7636	1.35e-05	0.197	GCCCGGATGTG
SP4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	15	31	-	9.29091	1.35e-05	0.0127	CAGCCTCCGCCCCCTTC
SP4	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	15	31	-	9.29091	1.35e-05	0.0127	CAGCCTCCGCCCCCTTC
SP4	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	15	31	-	9.29091	1.35e-05	0.0127	CAGCCTCCGCCCCCTTC
SP4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	18	34	-	9.29091	1.35e-05	0.0127	GAGACCCCGCCCCGGCC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	22	38	-	9.29091	1.35e-05	0.0127	GGCGCCCCGCCCTCTCC
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	77	93	+	9.29091	1.35e-05	0.0127	GGCGCCCCGCCCTCTCC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	81	97	+	9.29091	1.35e-05	0.0127	GAGACCCCGCCCCGGCC
SP4	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	85	101	+	9.29091	1.35e-05	0.0127	CAGCCTCCGCCCCCTTC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.3803	1.35e-05	0.07	GCCGGAAGTC
TCF3	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	26	+	13.4423	1.35e-05	0.38	TGCACCTGCG
TCF3	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	98	-	13.4423	1.35e-05	0.38	TGCACCTGCG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	70	88	-	12.1967	1.35e-05	0.0762	AGGCCACAGGGTGGCCCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	+	13.4364	1.35e-05	0.0893	CGCCTCAGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	-	13.4364	1.35e-05	0.0893	CGCCTCAGGGCT
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	64	77	+	9.97959	1.35e-05	0.365	TGGCAGCCCACCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	64	77	+	9.97959	1.35e-05	0.365	TGGCAGCCCACCAA
ELF5	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	55	65	+	13.0182	1.35e-05	0.0978	AACCGGAAGCA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	60	-	13.0182	1.35e-05	0.0978	AACCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	60	-	13.0182	1.35e-05	0.0978	AACCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	60	-	13.0182	1.35e-05	0.0978	AACCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	60	-	13.0182	1.35e-05	0.0978	AACCGGAAGCA
ELF5	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	67	77	+	13.0182	1.35e-05	0.0978	GCCCGGAAGTA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	75	-	12.0909	1.35e-05	0.232	CAGGCTAGAGGTCA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	17	30	+	12.0909	1.35e-05	0.232	CAGGCTAGAGGTCA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	18	28	+	12.9655	1.35e-05	0.0586	CCGCCTACGTA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	53	63	-	12.9655	1.35e-05	0.0586	CCGCCTACGTA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	13	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	13	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	13	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	13	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	13	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	4	14	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	14	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	14	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	4	14	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	4	14	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	15	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	15	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	5	15	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	15	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	15	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	16	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	16	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	16	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	6	16	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	6	16	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	7	17	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	7	17	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	7	17	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	17	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	17	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	8	18	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	18	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	8	18	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	19	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	19	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	9	19	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	20	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	20	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	10	20	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	21	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	12	22	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	34	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	34	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	35	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	35	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	26	36	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	36	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	26	36	+	13.431	1.35e-05	0.01	GACCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	37	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	38	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	39	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	29	39	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	40	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	40	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	31	41	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	31	41	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	32	42	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	42	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	43	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	33	43	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	42	52	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	45	55	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	56	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	48	58	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	56	66	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	56	66	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	57	67	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	86	96	+	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	18	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	18	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	19	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	19	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	10	20	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	10	20	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	19	29	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	32	42	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	32	42	-	13.431	1.35e-05	0.01	GACCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	33	43	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	57	67	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	69	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	60	70	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	63	73	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	104	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	95	105	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	95	105	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	96	106	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	97	107	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	108	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	109	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	100	110	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	101	111	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	102	112	-	13.431	1.35e-05	0.01	CCCCCCCCCCC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	14	27	+	8.6	1.35e-05	0.127	GAAAATAGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	14	27	+	8.6	1.35e-05	0.127	GAAAATAGGAAGTG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	39	52	-	8.6	1.35e-05	0.127	GAAAATAGGAAGTG
SP3	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	106	+	13.2195	1.35e-05	0.0102	GCCCCGCCCAA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	9	19	-	13.2195	1.35e-05	0.0102	GCCCCGCCCAA
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	9	19	-	13.2195	1.35e-05	0.0102	GCCCCGCCCAA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	9	19	-	13.2195	1.35e-05	0.0102	GCCCCGCCCAA
TFAP4	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	13.9636	1.35e-05	0.606	AACAGCTGTG
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	13.9636	1.35e-05	0.606	AACAGCTGTG
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	13.9636	1.35e-05	0.606	AACAGCTGTG
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	45	55	-	13.6579	1.35e-05	1	CTAATAAATCA
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	11	22	+	13.4727	1.35e-05	0.0548	TCCCCCGAGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	40	51	-	13.4727	1.35e-05	0.0548	AGCCCCCAGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	104	-	13.4727	1.35e-05	0.0548	TCCCCCGAGGCC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	13.7885	1.35e-05	0.1	GCCACGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	13.7885	1.35e-05	0.1	GCCACGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	13.7885	1.35e-05	0.1	GCCACGTGAT
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	10	23	+	13.8276	1.35e-05	0.147	GTTCCAGGAACCCA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	10	23	+	13.8276	1.35e-05	0.147	GTTCCAGGAACCCA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	11	24	+	13.8276	1.35e-05	0.147	TTTCAGGGAAGCCA
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	11	24	+	13.8276	1.35e-05	0.147	TTTCAGGGAAGCCA
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	11	24	+	13.8276	1.35e-05	0.147	TTTCAGGGAAGCCA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	11	24	+	13.8276	1.35e-05	0.147	TTTCAGGGAAGCCA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	45	58	+	13.8276	1.35e-05	0.147	TTTCTAAGAAGAGG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	45	58	+	13.8276	1.35e-05	0.147	TTTCTAAGAAGAGG
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	48	61	-	13.8276	1.35e-05	0.147	GTTCCAGGAACCCA
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	48	61	-	13.8276	1.35e-05	0.147	GTTCCAGGAACCCA
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	13	26	+	12.1311	1.35e-05	0.176	CCCCCCCCGTGTTG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	13	26	+	12.1311	1.35e-05	0.176	CCCCCCCCGTGTTG
GLIS2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	89	102	-	12.1311	1.35e-05	0.176	CCCCCCCCGTGTTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	38	52	+	13.4483	1.35e-05	0.00529	GTTCCGCCTCTCTTC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	38	52	+	13.4483	1.35e-05	0.00529	GTTCCGCCTCTCTTC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	38	52	+	13.4483	1.35e-05	0.00529	GTTCCGCCTCTCTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	38	52	+	13.4483	1.35e-05	0.00529	GTTCCGCCTCTCTTC
SP2	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	35	49	-	13.4483	1.35e-05	0.00529	GCTCCTCCCCCTGTG
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	37	51	-	13.4483	1.35e-05	0.00529	GCCCCGCCCAGGGCT
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	44	58	-	13.4483	1.35e-05	0.00529	GCCCTGCCCTTTCCC
SP2	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	63	77	-	13.4483	1.35e-05	0.00529	GTTCCGCCTCTCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	26	39	-	12.6552	1.35e-05	0.0188	GGTCCCGCCCCCGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	26	39	-	12.6552	1.35e-05	0.0188	GGTCCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	26	39	-	12.6552	1.35e-05	0.0188	GGTCCCGCCCCCGA
FOXH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	102	112	-	13.9808	1.35e-05	1	CAGAATACACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	102	112	-	13.9808	1.35e-05	1	CAGAATACACA
FOXH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	2	12	+	13.9808	1.35e-05	1	CAGAATACACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	2	12	+	13.9808	1.35e-05	1	CAGAATACACA
E2F8	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	33	44	-	9.20732	1.35e-05	0.631	CCTCCCGCCAAC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	+	13.3061	1.35e-05	0.0857	AGCCCTGAGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	-	13.3061	1.35e-05	0.0857	CGCCCGCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	-	13.3061	1.35e-05	0.0857	AGCCCTGAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	-	13.3061	1.35e-05	0.0857	CGCCCGCGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	-	13.3061	1.35e-05	0.0857	CGCCCGCGGGGA
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	110	+	14.0612	1.36e-05	0.117	AACAGCTGTCCTT
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	23	33	+	12	1.36e-05	0.862	GTCAAGGTGAA
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	23	33	+	12	1.36e-05	0.862	GTCAAGGTGAA
SP4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	3	19	-	9.27273	1.36e-05	0.0127	CCCGCCCCGCCCGCTTT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	25	41	+	9.27273	1.36e-05	0.0127	CCCGCCCCGCCCGCTTT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	25	41	+	9.27273	1.36e-05	0.0127	CCCGCCCCGCCCGCTTT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	33	49	+	9.27273	1.36e-05	0.0127	ACATCCCCGCCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	33	49	+	9.27273	1.36e-05	0.0127	ACATCCCCGCCCCCACC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	102	113	-	13.5429	1.36e-05	0.217	CCCGCCCACCGG
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	102	113	-	13.5429	1.36e-05	0.217	CCCGCCCACCGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	102	113	-	13.5429	1.36e-05	0.217	CCCGCCCACCGG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	32	43	+	13.5429	1.36e-05	0.217	CCCGCCCACCGG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	-	13.6721	1.36e-05	0.0626	AGCCCGTCGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	+	13.6721	1.36e-05	0.0626	AGCCCGTCGGGCG
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	16	28	+	13.9184	1.36e-05	0.301	GAAATGATGTCAG
JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	16	28	+	13.9184	1.36e-05	0.301	GAAATGATGTCAG
JUN	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	87	99	-	13.9184	1.36e-05	0.301	GAAATGATGTCAG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	23	33	+	13.7869	1.36e-05	0.121	GACCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	23	33	+	13.7869	1.36e-05	0.121	GACCGGAAACC
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	71	80	-	12.3065	1.36e-05	0.651	TACATTCCAC
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	71	80	-	12.3065	1.36e-05	0.651	TACATTCCAC
TEAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	71	80	-	12.3065	1.36e-05	0.651	TACATTCCAC
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	71	80	-	12.3065	1.36e-05	0.651	TACATTCCAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	100	114	-	11.6579	1.36e-05	0.134	GCAGTGAGTCAGCCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	100	114	-	11.6579	1.36e-05	0.134	GCAGTGAGTCAGCCA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	100	114	-	11.6579	1.36e-05	0.134	GCAGTGAGTCAGCCA
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	100	114	-	11.6579	1.36e-05	0.134	GCAGTGAGTCAGCCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	67	+	13.3269	1.36e-05	0.00919	TCCCCTCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	67	+	13.3269	1.36e-05	0.00919	TCCCCTCCCCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	67	+	13.3269	1.36e-05	0.00919	TCCCCTCCCCCAGG
EGR1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	48	61	-	13.3269	1.36e-05	0.00919	TCCCCTCCCCCAGG
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	5	14	-	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	19	28	+	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	44	53	-	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	71	+	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	68	77	-	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	94	+	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	101	110	+	14.0612	1.36e-05	0.00862	CCCCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	104	113	+	14.0612	1.36e-05	0.00862	CCCCCACCCT
EGR3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	35	49	+	11.0172	1.36e-05	0.0287	TCCCGCCCCCCCTCT
EGR3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	66	80	-	11.0172	1.36e-05	0.0287	TCCCGCCCCCCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	3	13	-	13.8077	1.36e-05	0.00595	GGTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	3	13	-	13.8077	1.36e-05	0.00595	GGTCCGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	21	31	-	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	32	42	-	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	39	49	-	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.0	54	64	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.1	54	64	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	76	+	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	73	83	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	73	83	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	71	81	-	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	71	81	-	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	94	+	13.8077	1.36e-05	0.00595	ACCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	93	103	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	93	103	+	13.8077	1.36e-05	0.00595	GTCCCGCCTCT
NFYB	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	32	46	-	13.7692	1.36e-05	0.0859	GCCTCGCCCAATCAG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	101	114	-	10.8723	1.36e-05	0.0959	GGCCACCTGCCGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	101	114	-	10.8723	1.36e-05	0.0959	GGCCACCTGCCGCT
Foxk1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	51	67	-	13.5195	1.36e-05	1	GGTAAGTAAACAACGGT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	+	13.0909	1.36e-05	0.0992	GGTGACGTAATC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	+	13.0909	1.36e-05	0.0992	GGTGACGTAATC
CREB3	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	57	70	+	13.0571	1.36e-05	0.196	GGGTCACGTCATTC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	69	84	+	13.0727	1.36e-05	0.0329	CCCCGCCCCCCCCCGC
SPDEF	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	20	30	-	13.7455	1.36e-05	0.197	ACCCGGATCCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	71	88	-	-6.05263	1.36e-05	0.0249	GGAATGAATGAATGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	71	88	-	-6.05263	1.36e-05	0.0249	GGAATGAATGAATGAGGC
Tcf7	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	97	108	-	12.8226	1.36e-05	1	AGAGATTAAAGG
POU3F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	13	25	+	13.28	1.36e-05	1	AATATGTAAATCT
POU3F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	13	25	+	13.28	1.36e-05	1	AATATGTAAATCT
E2F4	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	14	24	-	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	84	94	-	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	84	94	-	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	84	94	-	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	84	94	-	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	21	31	+	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	42	52	+	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	52	62	+	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	92	102	+	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
E2F4	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	92	102	+	14.1897	1.36e-05	0.0364	AGGCGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	34	54	-	12.6122	1.36e-05	0.00767	GGAGAAGCGAGGAGTGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	34	54	-	12.6122	1.36e-05	0.00767	GGAGAAGCGAGGAGTGGGCGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	40	60	+	12.6122	1.36e-05	0.00767	GGAGAGTGAGGAGGAGGGGAA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	66	80	-	12.2295	1.36e-05	0.0324	GGACACGCCCCCTCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	66	80	-	12.2295	1.36e-05	0.0324	GGACACGCCCCCTCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	66	80	-	12.2295	1.36e-05	0.0324	GGACACGCCCCCTCG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	66	80	-	12.2295	1.36e-05	0.0324	GGACACGCCCCCTCG
RFX2	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	+	10.5	1.36e-05	0.106	AGTTACCATGGCTCCC
SRF	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	23	38	-	10.0328	1.36e-05	0.385	TGTCCATGTAAGGTAT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	-	13.5862	1.36e-05	0.0537	CCCCCTGCGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	-	13.5862	1.36e-05	0.0537	CCCCCTGCGGGCG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	81	94	-	13.7727	1.36e-05	0.0259	CCAGGTCCGGCCTC
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	66	78	+	8.04082	1.36e-05	0.233	CGGGGACCCCCCC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	66	78	+	8.04082	1.36e-05	0.233	CGGGGACCCCCCC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	66	78	+	8.04082	1.36e-05	0.233	CGGGGACCCCCCC
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	11	25	-	13.7778	1.37e-05	0.567	CCCACTCAGCACTAC
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	11	25	-	13.7778	1.37e-05	0.567	CCCACTCAGCACTAC
MAFK	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	95	109	-	13.7778	1.37e-05	0.567	TCGTCTCAGCAGTTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	13.5455	1.37e-05	0.0805	ACCGGAAACC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	13.5455	1.37e-05	0.0805	ACCGGAAACC
HEY1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	14.0182	1.37e-05	0.0969	GGCACGTGAC
HEY1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	14.0182	1.37e-05	0.0969	GGCACGTGAC
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	97	111	-	13.129	1.37e-05	0.959	CATTGTCATGGTTAT
Pou5f1::Sox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	97	111	-	13.129	1.37e-05	0.959	CATTGTCATGGTTAT
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	97	111	-	13.129	1.37e-05	0.959	CATTGTCATGGTTAT
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	97	111	-	13.129	1.37e-05	0.959	CATTGTCATGGTTAT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	80	92	-	12.6212	1.37e-05	0.214	TGGGGAACTCCCA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	8	27	+	8.7156	1.37e-05	0.0402	CCCCATCTCACAACCAAACT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	8	27	+	8.7156	1.37e-05	0.0402	CCCCATCTCACAACCAAACT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	21	+	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	21	+	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	9	20	-	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	11	22	-	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	32	43	-	13.3553	1.37e-05	0.0164	ACACCGCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	32	43	-	13.3553	1.37e-05	0.0164	ACACCGCCCACT
SP8	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	86	+	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
SP8	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	104	+	13.3553	1.37e-05	0.0164	GCTCCGCCCCCT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	-	13.5091	1.37e-05	0.0397	TGCCTCGGGCA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	+	13.5091	1.37e-05	0.0397	TGCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	+	13.5091	1.37e-05	0.0397	AGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	+	13.5091	1.37e-05	0.0397	AGCCTGCGGCG
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	66	80	+	13.0152	1.37e-05	0.195	TAAGTTTTTTTTTTC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	60	74	-	13.0152	1.37e-05	0.195	TAAGTTTTTTTTTTC
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	47	63	+	11.8553	1.37e-05	0.527	CCCCGGACGTCCCAGGG
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	52	68	-	11.8553	1.37e-05	0.527	CCCCGGACGTCCCAGGG
YY2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	8	18	+	13.5909	1.37e-05	0.269	ATCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	89	99	-	13.5909	1.37e-05	0.269	TGCCGCCATTT
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	89	99	-	13.5909	1.37e-05	0.269	TGCCGCCATTT
YY2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	97	107	-	13.5909	1.37e-05	0.269	ATCCGCCATGA
SP2	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	20	+	13.431	1.37e-05	0.00531	CCCCCTCCCCCGAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	38	52	+	13.431	1.37e-05	0.00531	GGCCCTCCCTCTGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	87	101	+	13.431	1.37e-05	0.00531	CTCCCGCCTCTGTTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	87	101	+	13.431	1.37e-05	0.00531	CTCCCGCCTCTGTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	87	101	+	13.431	1.37e-05	0.00531	CTCCCGCCTCTGTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	87	101	+	13.431	1.37e-05	0.00531	CTCCCGCCTCTGTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	17	31	-	13.431	1.37e-05	0.00531	GTTCCGCCCACTGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	17	31	-	13.431	1.37e-05	0.00531	GTTCCGCCCACTGTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	29	43	-	13.431	1.37e-05	0.00531	GCCCCACCCACCTTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	29	43	-	13.431	1.37e-05	0.00531	GCCCCACCCACCTTC
SP2	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	95	109	-	13.431	1.37e-05	0.00531	CCCCCTCCCCCGAGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	26	43	-	-6.06579	1.37e-05	0.025	TGAAGGAAGGAAAAAATG
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	55	69	-	13.6479	1.37e-05	0.341	AACAAAAAAACAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	55	69	-	13.6479	1.37e-05	0.341	AACAAAAAAACAAAA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	43	59	+	12.9592	1.37e-05	0.338	AGGTCAGGCCAAGGTCT
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	43	59	+	12.9592	1.37e-05	0.338	AGGTCAGGCCAAGGTCT
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	43	59	+	12.9592	1.37e-05	0.338	AGGTCAGGCCAAGGTCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	43	59	+	12.9592	1.37e-05	0.338	AGGTCAGGCCAAGGTCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	23	34	+	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	23	34	+	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	79	90	+	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	+	13.4545	1.37e-05	0.0548	AGCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	-	13.4545	1.37e-05	0.0548	TGCCCTGAGCCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	23	-	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	36	-	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	-	13.4545	1.37e-05	0.0548	AGCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	-	13.4545	1.37e-05	0.0548	AGCCCCGGGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	92	-	13.4545	1.37e-05	0.0548	CCCCCCGGGGCC
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	18	32	+	13.0649	1.37e-05	0.347	AGTTAAAGTTTAACT
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	18	32	+	13.0649	1.37e-05	0.347	AGTTAAAGTTTAACT
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	25	44	-	8.70642	1.37e-05	0.0402	CTCGACCCCACCCCCCCCGC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	71	90	+	8.70642	1.37e-05	0.0402	CTCGACCCCACCCCCCCCGC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	-	13.569	1.37e-05	0.0537	CCCCCTCCGGGCG
OLIG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	14.3846	1.37e-05	1	AGCATATGTT
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	14.3846	1.37e-05	1	AGCATATGTT
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	14.3846	1.37e-05	1	AGCATATGTT
Lhx3	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	68	80	+	13.6337	1.37e-05	1	AGATTAATTAACA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	30	40	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	30	40	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	30	40	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	30	40	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	31	41	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	72	82	+	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	95	+	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	95	+	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	95	+	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	95	+	13.7692	1.37e-05	0.00597	CCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	80	90	-	13.7692	1.37e-05	0.00597	CCTCCACCCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	28	+	13.9592	1.37e-05	0.0713	GCCACGTGATT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	28	+	13.9592	1.37e-05	0.0713	GCCACGTGATT
USF2	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	59	+	13.9592	1.37e-05	0.0713	ATCACGTGGCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	42	58	-	9.23636	1.37e-05	0.0128	GTAGCCCCGCCCCGGGG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	42	58	-	9.23636	1.37e-05	0.0128	GTAGCCCCGCCCCGGGG
SMAD2::SMAD3::SMAD4	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	1	13	-	13.5082	1.37e-05	0.343	CTGTCTCTCTCTT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	102	114	+	13.5082	1.37e-05	0.343	CTGTCTCTCTCTT
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	-	14.3617	1.37e-05	0.169	GCTGACTCATA
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	-	14.3617	1.37e-05	0.169	GCTGACTCATA
FOS	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	-	14.3617	1.37e-05	0.169	TGTGACTCATA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	48	58	-	13.697	1.37e-05	0.0397	GGACACGCCCA
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	62	71	-	13.3131	1.37e-05	0.223	CGGAATTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	62	71	-	13.3131	1.37e-05	0.223	CGGAATTTCC
Hes2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	21	33	-	12.4286	1.37e-05	0.377	GGGGGACACGTGA
Hes2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	41	53	-	12.4286	1.37e-05	0.377	GGGGGACACGTGA
Hes2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	62	74	+	12.4286	1.37e-05	0.377	GGGGGACACGTGA
Hes2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	82	94	+	12.4286	1.37e-05	0.377	GGGGGACACGTGA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	27	40	+	11.9571	1.37e-05	0.0932	TGATGACGTAAGCC
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	27	40	+	11.9571	1.37e-05	0.0932	TGATGACGTAAGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	-	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	+	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	+	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	+	13.7857	1.37e-05	0.148	CGCAGCTGCC
Ascl2	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	+	13.7857	1.37e-05	0.148	CGCAGCTGCC
NFKB2	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	25	37	-	12.6061	1.37e-05	0.214	CGGGGCTCTCCCT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	7	17	+	13.9273	1.37e-05	0.0363	CCACTTCCTGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	64	74	+	13.9273	1.37e-05	0.0363	CCACTTCCTGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	84	94	-	13.9273	1.37e-05	0.0363	CCACTTCCTGG
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	52	64	-	13.4571	1.37e-05	0.729	CATCCAGTTGTGG
ZIC4	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	38	52	+	13.1818	1.37e-05	0.0974	CGCCCCCTGCCGCCC
ZIC4	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	63	77	-	13.1818	1.37e-05	0.0974	CGCCCCCTGCCGCCC
NFYB	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	57	71	+	13.75	1.37e-05	0.0859	GCCTCAGCCAATCGC
NFYB	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	44	58	-	13.75	1.37e-05	0.0859	GCCTCAGCCAATCGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	57	68	-	13.6818	1.37e-05	0.109	AAGCGTCCGCGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	21	34	+	13.3077	1.38e-05	0.00928	CGCCCGCCGACGCG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	63	73	-	13.8197	1.38e-05	0.0335	CCGGAAGCAAC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	87	97	+	13.8197	1.38e-05	0.0335	CCGGAAGCAAC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	12.7818	1.38e-05	0.0689	GCCGGAAGTC
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	35	-	12.9455	1.38e-05	0.0763	GACCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	80	91	+	12.9455	1.38e-05	0.0763	GACCCGGAAACG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	80	91	+	12.9455	1.38e-05	0.0763	GACCCGGAAACG
PAX5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	36	54	+	13.1935	1.38e-05	0.137	GGGGCCTCCGGAGCGGGGC
PAX5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	35	53	-	13.1935	1.38e-05	0.137	GGGGCCTCCGGAGCGGGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	62	80	+	13.1935	1.38e-05	0.137	GGGGCCTCCGGAGCGGGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	61	79	-	13.1935	1.38e-05	0.137	GGGGCCTCCGGAGCGGGGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	37	51	-	10.9828	1.38e-05	0.0287	CCCCGCCCCCACCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	37	51	-	10.9828	1.38e-05	0.0287	CCCCGCCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	37	51	-	10.9828	1.38e-05	0.0287	CCCCGCCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	37	51	-	10.9828	1.38e-05	0.0287	CCCCGCCCCCACCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	37	51	-	10.9828	1.38e-05	0.0287	CCCCGCCCCCACCCC
Creb5	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	52	63	+	13	1.38e-05	0.0992	CCTGACGTCACG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	52	63	-	13	1.38e-05	0.0992	CCTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	52	63	-	13	1.38e-05	0.0992	CCTGACGTCACG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	22	42	-	12.5918	1.38e-05	0.00774	AGGAAAGGGGGGGGGGAAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	30	50	-	12.5918	1.38e-05	0.00774	AAAGGAAAAAGGAAAAGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	34	54	-	12.5918	1.38e-05	0.00774	GGGAAAGGGGGAGAGAAGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	92	112	-	12.5918	1.38e-05	0.00774	GGGGGATGGAGGATGAAGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	3	23	+	12.5918	1.38e-05	0.00774	CGGGGAAGAGCGGAGGAAGGG
HES7	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	93	104	+	8.81034	1.38e-05	0.189	AGGAACGTGCCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	32	51	+	8.68807	1.38e-05	0.0402	CCCCAAATCACAGACTGAGA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	32	51	+	8.68807	1.38e-05	0.0402	CCCCAAATCACAGACTGAGA
SP2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	68	82	+	13.4138	1.38e-05	0.00534	CCCCCTCCTCTTCTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	94	108	+	13.4138	1.38e-05	0.00534	CCCCTGCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	94	108	+	13.4138	1.38e-05	0.00534	CCCCTGCCCCCGCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	15	29	-	13.4138	1.38e-05	0.00534	CCCCTGCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	15	29	-	13.4138	1.38e-05	0.00534	CCCCTGCCCCCGCGC
SP2	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	18	32	-	13.4138	1.38e-05	0.00534	CCCCCTCCTCTTCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	28	42	-	13.4138	1.38e-05	0.00534	GTTCCGCCCTCGGGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	59	75	-	9.21818	1.38e-05	0.0128	ATCGCCCCACCCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	59	75	-	9.21818	1.38e-05	0.0128	ATCGCCCCACCCCCTCC
Hes1	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	13	22	+	11	1.38e-05	0.0721	GCCACGCGGC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	6	15	-	11	1.38e-05	0.0721	GCCACGCGGC
Hes1	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	93	102	-	11	1.38e-05	0.0721	GCCACGCGGC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	95	104	+	12.5758	1.38e-05	0.113	CGAGGGGGGA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.0.0	27	40	-	8.52727	1.38e-05	0.127	AAAAAGCAGAAGGA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.1.0	27	40	-	8.52727	1.38e-05	0.127	AAAAAGCAGAAGGA
FEV	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13.6154	1.38e-05	0.0872	ACCGGATGTC
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	13.8298	1.38e-05	0.079	ACCGGAAACC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	13.8298	1.38e-05	0.079	ACCGGAAACC
FEV	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13.6154	1.38e-05	0.0872	ACCGGATGTC
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	62	72	+	13.7377	1.38e-05	0.121	TACCGGAAGTT
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	62	72	+	13.7377	1.38e-05	0.121	TACCGGAAGTT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	73	91	-	12.1475	1.38e-05	0.077	GGACCAGCGGGTGGAGCGC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	73	91	-	12.1475	1.38e-05	0.077	GGACCAGCGGGTGGAGCGC
POU2F2	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	46	58	-	13.8103	1.38e-05	0.757	CTTATTTGCATAG
POU2F2	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	57	69	+	13.8103	1.38e-05	0.757	CTTATTTGCATAG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	11	21	+	13.2909	1.38e-05	0.00819	GCGCATGTGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	11	21	+	13.2909	1.38e-05	0.00819	GCGCATGTGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	30	40	-	13.2909	1.38e-05	0.00819	ACGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	30	40	-	13.2909	1.38e-05	0.00819	ACGCAGGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	56	66	+	13.2909	1.38e-05	0.00819	ACGCAGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	49	59	-	13.2909	1.38e-05	0.00819	ACGCAGGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	54	64	-	13.2909	1.38e-05	0.00819	ACGCAGGCGCA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	47	61	-	12.1967	1.38e-05	0.0324	GGCCACTCCCCTCAC
Klf12	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	55	69	-	12.1967	1.38e-05	0.0324	CACCACGCCCCGCCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	-	13.541	1.38e-05	0.0545	TGCCACAGGGGCA
KLF14	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	64	77	+	12.6034	1.38e-05	0.0192	AGCCGCGCCCCCAG
KLF14	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	38	51	-	12.6034	1.38e-05	0.0192	AGCCGCGCCCCCAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	11	28	-	-6.11842	1.38e-05	0.0252	GGAAGGAAACAAAGACGG
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	17	30	-	11.9286	1.38e-05	0.0932	CTGTGACGTCAGAA
SOX9	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	36	44	-	12.8537	1.38e-05	1	CTATTGTTC
JDP2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	10	-	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	30	38	-	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	30	38	-	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	32	40	-	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	67	75	-	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	19	27	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	31	39	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	32	40	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	40	48	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	82	90	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	82	90	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	82	90	+	14.8621	1.38e-05	0.225	ATGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	82	90	+	14.8621	1.38e-05	0.225	ATGACTCAC
NFYA	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	26	43	+	12.7195	1.39e-05	0.0677	CGGGCTCTGATTGGGCGA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	84	101	-	12.7195	1.39e-05	0.0677	AGGCTGCTGGTTGGCGTC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	84	101	-	12.7195	1.39e-05	0.0677	AGGCTGCTGGTTGGCGTC
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	25	40	+	8.58182	1.39e-05	0.227	GAGGGCGGAGTCCGAG
Hnf4a	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	25	40	+	8.58182	1.39e-05	0.227	GAGGGCGGAGTCCGAG
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	17	+	14.0408	1.39e-05	0.117	CACAGCTGCTGCT
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	17	+	14.0408	1.39e-05	0.117	CACAGCTGCTGCT
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	49	61	-	12.2931	1.39e-05	0.108	AAACCGGAAGCAA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	49	61	-	12.2931	1.39e-05	0.108	AAACCGGAAGCAA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	49	61	-	12.2931	1.39e-05	0.108	AAACCGGAAGCAA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	49	61	-	12.2931	1.39e-05	0.108	AAACCGGAAGCAA
ELF3	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	54	66	+	12.2931	1.39e-05	0.108	AAACCGGAAGCAA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	27	41	+	10.9655	1.39e-05	0.0287	CCCCCCCCCCGCCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	39	50	+	9.10345	1.39e-05	0.213	ACACACGTGCCT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	39	50	+	9.10345	1.39e-05	0.213	ACACACGTGCCT
HOXB13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	48	57	+	13.4364	1.39e-05	1	CCAATAAAAG
HOXB13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	48	57	+	13.4364	1.39e-05	1	CCAATAAAAG
HOXB13	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	49	58	+	13.4364	1.39e-05	1	CCAATAAAAG
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	26	36	+	13.7759	1.39e-05	0.349	CAATCAGAGCC
Gfi1b	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	58	68	+	13.7759	1.39e-05	0.349	CAATCAGAGCC
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	28	38	-	13.7759	1.39e-05	0.349	CAATCAGAGCC
Gfi1b	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	47	57	-	13.7759	1.39e-05	0.349	CAATCAGAGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	52	68	+	9.2	1.39e-05	0.0129	TCCGCTCCGCCCACCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	52	68	+	9.2	1.39e-05	0.0129	TCCGCTCCGCCCACCCC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	33	45	-	8	1.39e-05	0.233	AGGGGGAACCCCA
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	33	45	-	8	1.39e-05	0.233	AGGGGGAACCCCA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	21	34	+	13.7931	1.39e-05	0.147	TTTCTGGGAAGGAT
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	21	34	+	13.7931	1.39e-05	0.147	TTTCTGGGAAGGAT
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	29	42	-	13.7931	1.39e-05	0.147	TTTCTGGGAAGGAT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	29	42	-	13.7931	1.39e-05	0.147	TTTCTGGGAAGGAT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	+	13.4	1.39e-05	0.0893	TGCCCCCAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	+	13.4	1.39e-05	0.0893	TGCCCCCAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	+	13.4	1.39e-05	0.0893	TGCCCCCAGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	-	13.4	1.39e-05	0.0893	CGCCCCCCGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	-	13.4	1.39e-05	0.0893	CGCCCCCCGGCA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	8	18	+	14.0204	1.39e-05	0.219	GTTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	8	18	+	14.0204	1.39e-05	0.219	GTTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	8	18	+	14.0204	1.39e-05	0.219	GTTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	8	18	+	14.0204	1.39e-05	0.219	GTTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	8	18	+	14.0204	1.39e-05	0.219	GTTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	43	53	-	14.0204	1.39e-05	0.219	AGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	43	53	-	14.0204	1.39e-05	0.219	AGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	43	53	-	14.0204	1.39e-05	0.219	AGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	43	53	-	14.0204	1.39e-05	0.219	AGTTCCCGGAA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	33	43	+	12.8571	1.39e-05	0.184	CATGAGTCACT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	35	49	+	13.1636	1.39e-05	0.0974	TCCCGCCCGCAGAGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	95	109	-	13.1636	1.39e-05	0.0974	GACGCCCTGCAGTGG
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	21	34	+	13.1034	1.39e-05	0.1	GTTGCCACGGAGAC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	61	74	+	11.9143	1.39e-05	0.0932	GTGTTACGTCACAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	36	50	-	13.7308	1.39e-05	0.0859	GCCTCCTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	36	50	-	13.7308	1.39e-05	0.0859	GCCTCCTCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	36	50	-	13.7308	1.39e-05	0.0859	GCCTCCTCCAATCAG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	13.5862	1.39e-05	0.0601	ACCGGATGTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	10	23	-	13.7424	1.39e-05	0.0259	CCGAGTCAGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	27	40	+	13.7424	1.39e-05	0.0259	TGAGCCTAGGCCTT
Zfx	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	23	36	-	13.7424	1.39e-05	0.0259	CCGAGTCAGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	79	92	+	13.7424	1.39e-05	0.0259	CCGAGTCAGGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	75	88	-	13.7424	1.39e-05	0.0259	TGAGCCTAGGCCTT
Zfx	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	92	105	+	13.7424	1.39e-05	0.0259	CCGAGTCAGGCCTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	26	39	+	10.1837	1.39e-05	0.0605	GGGGCGCAGCGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	26	39	+	10.1837	1.39e-05	0.0605	GGGGCGCAGCGGGG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	75	84	+	12.1707	1.39e-05	0.392	CAAATCACAC
ERF	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	13.6286	1.39e-05	0.0716	ACCGGAAACG
Mitf	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	21	30	+	12.1224	1.39e-05	0.123	AGTCACGAGG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	4	14	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	51	61	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	51	61	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	51	61	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	51	61	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	51	61	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	75	85	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	75	85	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	75	85	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	75	85	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	75	85	-	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	96	106	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	96	106	+	13.1207	1.39e-05	0.215	TACTGTGGTTT
IRF9	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	20	34	+	3.98182	1.39e-05	0.409	AACGTAAGTGAAACT
IRF9	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	81	95	-	3.98182	1.39e-05	0.409	AACGTAAGTGAAACT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	4	17	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	21	34	+	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	21	34	+	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	21	34	+	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	21	34	+	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	36	49	+	13.2885	1.39e-05	0.00928	CCCCCGCCGTCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	24	37	-	13.2885	1.39e-05	0.00928	CTCTCTCCCCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	66	79	-	13.2885	1.39e-05	0.00928	CCCCCGCCGTCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	74	87	-	13.2885	1.39e-05	0.00928	ACGCCGCCGCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	81	94	-	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	98	111	+	13.2885	1.39e-05	0.00928	GCTCCGCCTCCTGC
Klf12	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	26	40	-	12.1803	1.39e-05	0.0324	AGCCCCGCCCTTTGA
RELA	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	9	18	+	14.0714	1.39e-05	0.18	CGGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	12	21	+	14.0714	1.39e-05	0.18	CGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	12	21	+	14.0714	1.39e-05	0.18	CGGGCTTTCC
RELA	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	35	44	-	14.0714	1.39e-05	0.18	CGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	71	80	+	14.0714	1.39e-05	0.18	CGGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	71	80	+	14.0714	1.39e-05	0.18	CGGGCTTTCC
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	4	19	+	7.55172	1.39e-05	0.268	CTCCCAGAATCCTCCA
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	4	19	+	7.55172	1.39e-05	0.268	CTCCCAGAATCCTCCA
ZNF143	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	96	111	-	7.55172	1.39e-05	0.268	CTCCCAGAATCCTCCA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	72	82	+	13.8727	1.39e-05	0.0365	TAACTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	72	82	+	13.8727	1.39e-05	0.0365	TAACTTCCGGC
ELF5	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	57	67	+	13	1.39e-05	0.0978	TCCAGGAAGTG
ELF5	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	48	58	-	13	1.39e-05	0.0978	TCCAGGAAGTG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	-	13.8545	1.39e-05	0.063	TGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	-	13.8545	1.39e-05	0.063	TGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	+	13.8545	1.39e-05	0.063	AGCCTCGGGCT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	97	+	11.9429	1.39e-05	0.0969	GCCCCCCCGCGACTC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	57	77	-	12.5714	1.4e-05	0.00781	AGGGGAGGGTAAAAGAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	60	80	-	12.5714	1.4e-05	0.00781	GGAAGCCGGGAGGGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	60	80	-	12.5714	1.4e-05	0.00781	GGAAGCCGGGAGGGAGGGGAG
MEF2D	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	+	11.5636	1.4e-05	0.357	GCTAATTATAGA
SP2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	13	27	+	13.3966	1.4e-05	0.00538	ACCCCTCCTCCCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	28	42	+	13.3966	1.4e-05	0.00538	GCTCCGCCCTCATGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	28	42	+	13.3966	1.4e-05	0.00538	GCTCCGCCCTCATGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	28	42	+	13.3966	1.4e-05	0.00538	GCTCCGCCCTCATGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	70	84	+	13.3966	1.4e-05	0.00538	CGCCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	70	84	+	13.3966	1.4e-05	0.00538	CGCCCTCCTCCTCCT
SP2	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	73	87	-	13.3966	1.4e-05	0.00538	GCTCCGCCCTCATGC
SP2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	88	102	-	13.3966	1.4e-05	0.00538	ACCCCTCCTCCCGCT
SPI1	WILDTYPE__Antisense.noflip.NA__chr11:128565847..128565961,-__165.1.0.0	19	32	-	8.49091	1.4e-05	0.127	AAAAGGAGGAAGCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	1	15	-	13.0901	1.4e-05	0.138	CAAGGGCAAAGGGGT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	1	15	-	13.0901	1.4e-05	0.138	CAAGGGCAAAGGGGT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	1	15	-	13.0901	1.4e-05	0.138	CAAGGGCAAAGGGGT
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	63	77	+	13.0901	1.4e-05	0.138	CAAGGGCAAAGGGGT
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	72	83	-	13.5385	1.4e-05	0.0958	AAATATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	72	83	-	13.5385	1.4e-05	0.0958	AAATATGGCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	11	25	+	10.9483	1.4e-05	0.0287	GGCCGCCCACCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	11	25	+	10.9483	1.4e-05	0.0287	GGCCGCCCACCCGCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	49	63	-	10.9483	1.4e-05	0.0287	GGCCGCCCGCGCAGC
EGR3	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	90	104	-	10.9483	1.4e-05	0.0287	GGCCGCCCACCCGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	+	13.5246	1.4e-05	0.0546	TCCCCGCAGGGGT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	25	35	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	25	35	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	25	35	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	35	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	25	35	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	36	46	+	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	48	58	+	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	48	58	+	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	71	81	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	77	87	+	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	85	95	+	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	2	12	-	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	18	28	-	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	18	28	-	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	20	30	-	13.2033	1.4e-05	0.0102	CCCACTCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	28	38	-	13.2033	1.4e-05	0.0102	CCCACCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	29	39	-	13.2033	1.4e-05	0.0102	TCCACTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	34	44	-	13.2033	1.4e-05	0.0102	CCCACCCCCCC
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	16	30	+	12.7286	1.4e-05	0.0859	CGGGGGCGGGGGGGA
NR2C2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	28	42	-	12.7286	1.4e-05	0.0859	CGGGGGGAGGGGTGG
Hes2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	90	102	+	12.4127	1.4e-05	0.377	TTAAGGAACGTGC
NFKB1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	2	14	+	7.97959	1.4e-05	0.233	GGGGGAATCCCTC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	101	113	-	7.97959	1.4e-05	0.233	GGGGGAATCCCTC
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	18	35	+	9.68966	1.4e-05	0.124	GCGCCGCGCCCCCATTGG
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	18	35	+	9.68966	1.4e-05	0.124	GCGCCGCGCCCCCATTGG
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	59	76	-	9.68966	1.4e-05	0.124	GCGCCGCGCCCCCATTGG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	59	76	-	9.68966	1.4e-05	0.124	GCGCCGCGCCCCCATTGG
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	20	33	-	6.83333	1.4e-05	0.115	CTGTGACGTCAGCT
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	20	33	-	6.83333	1.4e-05	0.115	CTGTGACGTCAGCT
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	13.9038	1.4e-05	0.162	GTCACGTGCT
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	13.9038	1.4e-05	0.162	GTCACGTGCT
Klf1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	4	14	+	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	9	19	+	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	25	35	+	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	28	38	+	13.6515	1.4e-05	0.0397	TACCACGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	66	76	+	13.6515	1.4e-05	0.0397	TACCACGCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	70	80	+	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	95	105	+	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	10	20	-	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	10	20	-	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	10	20	-	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	35	45	-	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	39	49	-	13.6515	1.4e-05	0.0397	TACCACGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	55	65	-	13.6515	1.4e-05	0.0397	CGCCCCGCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	38	+	13.75	1.4e-05	0.00607	GTCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	53	+	13.75	1.4e-05	0.00607	GTCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	53	+	13.75	1.4e-05	0.00607	GTCCCACCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	50	60	+	13.75	1.4e-05	0.00607	GTCCCACCCCT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	16	29	+	13.0143	1.4e-05	0.196	ACGCCACGTGACCC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	48	61	+	13.0143	1.4e-05	0.196	ACGCCACGTGACCC
CREB3	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	58	71	-	13.0143	1.4e-05	0.196	CAGCCACGTCAGGG
EGR2	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	80	90	+	12.8793	1.4e-05	0.0586	GCGCCCCCGCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	11	22	+	13.3421	1.4e-05	0.0164	CACACTCCCACC
SP8	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	46	+	13.3421	1.4e-05	0.0164	CCCCCTCCCACT
SP8	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	56	+	13.3421	1.4e-05	0.0164	GCCCCGCCCCAT
SP8	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	59	70	-	13.3421	1.4e-05	0.0164	GCCCCGCCCCAT
JUN	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	18	30	+	13.8571	1.4e-05	0.301	GAAATGATGCCAC
XBP1	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	86	99	+	13.0577	1.4e-05	0.446	TGTGCCACGTCAAG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	-	13.2755	1.4e-05	0.0857	TGGCCTCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	-	13.2755	1.4e-05	0.0857	TGGCCTCGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	70	81	-	13.2755	1.4e-05	0.0857	AACCCCAGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	70	81	-	13.2755	1.4e-05	0.0857	AACCCCAGGGCA
FOS	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	-	14.2979	1.4e-05	0.169	AATGACTCATG
ZIC4	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	12	26	-	13.1455	1.41e-05	0.0974	GCCTCCCTGCCGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	89	103	+	13.1455	1.41e-05	0.0974	GCCTCCCTGCCGCGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	+	10.5323	1.41e-05	0.0378	GCCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	+	10.5323	1.41e-05	0.0378	GGCACGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	-	10.5323	1.41e-05	0.0378	GGCACGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	-	10.5323	1.41e-05	0.0378	GCCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	55	64	+	10.5323	1.41e-05	0.0378	GCCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	55	64	-	10.5323	1.41e-05	0.0378	GGCGCGTGGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	100	114	-	10.931	1.41e-05	0.0287	GCACGCCCAGGCAGC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	67	81	-	9.35955	1.41e-05	0.175	GCAACCTGAGGGTGA
CEBPG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	-	12.8163	1.41e-05	0.597	ATGGCGCAAT
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	-	12.8163	1.41e-05	0.597	ATGGCGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	-	12.8163	1.41e-05	0.597	ATGGCGCAAT
CEBPG	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	+	12.8163	1.41e-05	0.597	ATGGCGCAAT
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	19	36	+	9.67241	1.41e-05	0.124	AAGCCACGTCCCCCATGT
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	19	36	+	9.67241	1.41e-05	0.124	AAGCCACGTCCCCCATGT
MAFK	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	84	98	-	13.7333	1.41e-05	0.567	AATGGTCAGCATTAT
ETV2	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	75	-	13.6557	1.41e-05	0.121	AAGCGGAAGTA
NFYB	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	12	26	-	13.7115	1.41e-05	0.0859	GAGGGAGCCAATGGG
Crem	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	34	+	13.5738	1.41e-05	0.19	TGTGACGTAA
Crem	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	64	+	13.5738	1.41e-05	0.19	TGTGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	64	73	-	13.5738	1.41e-05	0.19	TGTGACGTAA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	56	72	-	12.9082	1.41e-05	0.338	GGGTGGCGGAGAGGGGA
EGR4	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	25	40	-	13.0182	1.41e-05	0.0335	GCCCGCCCCCGCCGCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	49	64	+	13.0182	1.41e-05	0.0335	GTACCCCCCCGCACGC
NR3C2	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	+	10.383	1.41e-05	0.788	CGGGACAGGAAGTTCCT
NR3C2	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	-	10.383	1.41e-05	0.788	CGGGACAGGAAGTTCCT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	13.4681	1.41e-05	0.044	TCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	13.4681	1.41e-05	0.044	TCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	13.4681	1.41e-05	0.044	TCCGGAAGTT
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	5	18	+	13.2692	1.41e-05	0.00928	CCCCCACCTCCTTC
EGR1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	8	21	-	13.2692	1.41e-05	0.00928	CGCCCGCTCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	13	26	-	13.2692	1.41e-05	0.00928	GCTCCACCCCCTGG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	13	26	-	13.2692	1.41e-05	0.00928	GCTCCACCCCCTGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	41	+	13.2692	1.41e-05	0.00928	CCCCCGCCCTCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	41	+	13.2692	1.41e-05	0.00928	CCCCCGCCCTCTGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	29	42	+	13.2692	1.41e-05	0.00928	CCTCCTCCTCCTCT
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	21	34	-	13.2692	1.41e-05	0.00928	CCGCCACCGCCTCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	70	83	+	13.2692	1.41e-05	0.00928	CCTCCTCCTCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	70	83	+	13.2692	1.41e-05	0.00928	CCTCCTCCTCCTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	66	79	-	13.2692	1.41e-05	0.00928	GACACGCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	66	79	-	13.2692	1.41e-05	0.00928	GACACGCCCCCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	66	79	-	13.2692	1.41e-05	0.00928	GACACGCCCCCTCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	66	79	-	13.2692	1.41e-05	0.00928	GACACGCCCCCTCG
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	81	94	+	13.2692	1.41e-05	0.00928	CCGCCACCGCCTCA
EGR1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	74	87	-	13.2692	1.41e-05	0.00928	CCCCCGCCCTCTGC
EGR1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	94	107	+	13.2692	1.41e-05	0.00928	CGCCCGCTCCCGCT
SP3	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	45	+	13.1626	1.41e-05	0.0102	CCCCCTCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	34	44	-	13.1626	1.41e-05	0.0102	CCCCCTCCCAC
NRF1	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	12	22	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	16	26	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	16	26	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE__Lincrna.flip.sense__chr20:37063936..37064050,-__473.1.0.0	37	47	+	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	64	74	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	64	74	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	64	74	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	64	74	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr20:37063936..37064050,+__2383.1.0.0	68	78	-	13.2545	1.41e-05	0.00827	CCGCCGGCGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	34	48	-	12.7143	1.41e-05	0.0859	CGGGGGCGGGGGTGG
NR2C2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	67	81	+	12.7143	1.41e-05	0.0859	CGGGGGCGGGGGTGG
BATF3	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	32	45	+	6.78788	1.41e-05	0.115	GCCTGACGTCAGCA
BATF3	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	17	30	-	6.78788	1.41e-05	0.115	GCCTGACGTCAGCA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	6	20	+	13.3793	1.41e-05	0.00542	CTCCCTCCCCCACTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	6	20	+	13.3793	1.41e-05	0.00542	CTCCCTCCCCCACTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	47	61	+	13.3793	1.41e-05	0.00542	GCCCCGCCCTGGCAG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	47	61	+	13.3793	1.41e-05	0.00542	GCCCCGCCCTGGCAG
SP2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	85	+	13.3793	1.41e-05	0.00542	GCCCCGCCCAGATCC
SP2	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	81	95	+	13.3793	1.41e-05	0.00542	GTCCCACCCTTCGGC
SP2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	30	44	-	13.3793	1.41e-05	0.00542	GCCCCGCCCAGATCC
ETS1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	13.7069	1.41e-05	0.076	GCCGGAAATG
ETS1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	13.7069	1.41e-05	0.076	GCCGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	13.7069	1.41e-05	0.076	GCCGGAAATG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	13.7069	1.41e-05	0.076	GCCGGAAATG
ETS1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	13.7069	1.41e-05	0.076	GCCGGAAATG
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	29	39	-	13.9615	1.41e-05	0.2	TGTATGACTCA
SOX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	50	65	+	-4.33333	1.41e-05	1	TAACAACCCCAGTGTT
SOX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	50	65	+	-4.33333	1.41e-05	1	TAACAACCCCAGTGTT
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	+	14.2979	1.41e-05	0.169	TGTGAGTCATT
ZNF263	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	24	44	-	12.551	1.41e-05	0.00789	GGAGGAGGAACTGGCTGGACG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	89	109	-	12.551	1.41e-05	0.00789	GGTGGCGCTGGAGGCGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	15	35	+	12.551	1.41e-05	0.00789	TGGGGCGGGGCGGGGGGGGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	71	91	+	12.551	1.41e-05	0.00789	GGAGGAGGAACTGGCTGGACG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	2	11	+	13.4587	1.41e-05	0.0314	CCCCCCCCTT
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	29	38	+	13.4587	1.41e-05	0.0314	CCCCCCCCTT
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	29	38	+	13.4587	1.41e-05	0.0314	CCCCCCCCTT
STAT3	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	33	43	-	13.8163	1.41e-05	0.165	CTGCCTGGAAG
STAT3	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	72	82	+	13.8163	1.41e-05	0.165	CTGCCTGGAAG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	71	81	-	13.8163	1.41e-05	0.165	CTGCCTGGAAG
STAT3	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	94	104	+	13.8163	1.41e-05	0.165	CTGCCTGGAAG
EHF	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	69	80	+	13.2787	1.41e-05	0.0902	GTGCCGGAAGTA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	60	74	+	11.9143	1.41e-05	0.0969	ACCTCCCTGCTGTGT
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	52	63	-	12.7541	1.41e-05	0.0671	GACCCGGAACTA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	52	63	-	12.7541	1.41e-05	0.0671	GACCCGGAACTA
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	21	33	-	14.0204	1.41e-05	0.117	GCCAGCTGTCAGC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	21	33	-	14.0204	1.41e-05	0.117	GCCAGCTGTCAGC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	77	89	-	14.0204	1.41e-05	0.117	CGCAGCTGCCGGG
Klf4	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	3	12	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	10	19	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	14	23	+	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	20	29	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	23	32	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	24	33	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	31	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	34	43	+	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	26	35	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	26	35	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	26	35	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	36	45	+	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	36	45	+	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	49	58	+	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	53	62	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	53	62	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	53	62	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	53	62	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	56	65	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	58	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	59	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	53	62	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	80	89	+	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	80	-	13.3469	1.41e-05	0.0112	TGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	91	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	96	105	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	103	112	-	13.3469	1.41e-05	0.0112	AGGGAGGGGC
HES5	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	40	51	-	9	1.41e-05	0.213	CACCACGTGTCA
HES5	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	64	75	+	9	1.41e-05	0.213	CACCACGTGTCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	-	13.5	1.41e-05	0.0537	ACCCCTGCGGGGA
CDX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	95	105	-	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	95	105	-	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	95	105	-	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	95	105	-	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	2	12	+	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.0.0	2	12	+	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.0	2	12	+	13.9661	1.41e-05	1	CAGCCATAAAG
CDX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	2	12	+	13.9661	1.41e-05	1	CAGCCATAAAG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	+	13.2653	1.41e-05	0.0857	TGCCCCCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	+	13.2653	1.41e-05	0.0857	TGCCCCCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	+	13.2653	1.41e-05	0.0857	TGCCCCCAGGCC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	46	59	+	12.8525	1.41e-05	0.365	ATCCCCAAGGGGAA
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	46	59	+	12.8525	1.41e-05	0.365	ATCCCCAAGGGGAA
TFE3	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	12.7551	1.41e-05	0.0766	GCCACGTGAT
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	12.7551	1.41e-05	0.0766	GCCACGTGAT
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	12.7551	1.41e-05	0.0766	GCCACGTGAT
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	40	59	+	8.61468	1.41e-05	0.0407	CACAAAAACACACGCTCCCG
RFX3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	+	12.5	1.41e-05	0.0926	TGTCACCATGGGGACT
RFX3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	-	12.5	1.41e-05	0.0926	TGTCACCATGGGGACT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	31	43	+	12.5303	1.41e-05	0.216	AGGGAAGTCCCCT
Klf12	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	31	45	+	12.1475	1.42e-05	0.0324	GGCCACGCCTCCTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	23	37	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	23	37	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	55	69	+	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	55	69	+	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	55	69	+	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	55	69	+	12.1475	1.42e-05	0.0324	GGCCCCGCCCCGAGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	64	78	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCCGAA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	64	78	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCCGAA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	64	78	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCCGAA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	64	78	-	12.1475	1.42e-05	0.0324	GGCCCCGCCCCCGAA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	68	82	-	12.1475	1.42e-05	0.0324	GACCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	68	82	-	12.1475	1.42e-05	0.0324	GACCCCGCCCCGCCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	70	84	-	12.1475	1.42e-05	0.0324	GGCCACGCCTCCTCC
ZIC1	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	14	27	-	10.766	1.42e-05	0.0959	CGCCCCCCGCCGCC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	-	13.3273	1.42e-05	0.189	GTCACCTGAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	19	36	+	-6.21053	1.42e-05	0.0257	GGGAGGAAGGAAGCACCT
SPIC	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	63	76	+	13.2676	1.42e-05	0.139	CAGAAGAGGAAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	77	90	-	13.2676	1.42e-05	0.139	CAGAAGAGGAAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	77	90	-	13.2676	1.42e-05	0.139	CAGAAGAGGAAGCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	10	24	-	10.9138	1.42e-05	0.0287	CCGCGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	10	24	-	10.9138	1.42e-05	0.0287	CCGCGCCCCCGCCCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	96	110	+	10.9138	1.42e-05	0.0287	CGCCGCCTCCGCCCC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	23	33	-	14.3091	1.42e-05	0.125	GAGTGAGTCAC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	81	95	-	13.2182	1.42e-05	0.266	AGGAAGAGAAAATGA
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	54	63	+	13.6341	1.42e-05	0.569	AACAGCTTTT
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	54	63	+	13.6341	1.42e-05	0.569	AACAGCTTTT
MSC	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	56	65	-	13.6341	1.42e-05	0.569	AACAGCTTTT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	-	12.9273	1.42e-05	0.0992	GCTTACGTCATC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	-	12.9273	1.42e-05	0.0992	GCTTACGTCATC
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	-	12.9273	1.42e-05	0.0992	GCTTACGTCATC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	-	12.9273	1.42e-05	0.0992	GCTTACGTCATC
STAT1	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	35	45	+	13.8727	1.42e-05	0.177	TTTACAGGAAA
ZEB1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	65	73	+	14.4	1.42e-05	0.267	GCACACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	96	104	+	14.4	1.42e-05	0.267	GCACACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	96	104	+	14.4	1.42e-05	0.267	GCACACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	96	104	+	14.4	1.42e-05	0.267	GCACACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	96	104	+	14.4	1.42e-05	0.267	GCACACCTG
ZEB1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	11	19	-	14.4	1.42e-05	0.267	GCACACCTG
SP3	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	28	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	41	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	41	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	55	65	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	61	71	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	61	71	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	69	79	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	83	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	105	+	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	10	20	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	10	20	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	10	20	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	10	20	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	32	42	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	32	42	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	49	59	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	49	59	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	60	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	60	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	60	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	52	62	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	52	62	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	52	62	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	52	62	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	65	75	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	65	75	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	84	-	13.1545	1.42e-05	0.0102	CCCCCGCCTCC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	51	71	+	12.5161	1.42e-05	0.13	ACTTGGTTTTTTTTTTTTTTT
ATF7	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	17	30	+	11.8429	1.42e-05	0.0932	CTCTGACGTCACGG
ATF7	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	85	98	-	11.8429	1.42e-05	0.0932	CTCTGACGTCACGG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	13	24	+	12.9091	1.42e-05	0.0763	AAACAGGAAGTG
ELF1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	40	-	12.9091	1.42e-05	0.0763	AAACAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	57	68	+	12.9091	1.42e-05	0.0763	AGACCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	57	68	+	12.9091	1.42e-05	0.0763	AGACCGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	57	68	+	12.9091	1.42e-05	0.0763	AGACCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	57	68	+	12.9091	1.42e-05	0.0763	AGACCGGAAGTC
ELF1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	58	-	12.9091	1.42e-05	0.0763	AGACCGGAAGTC
ELF1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	67	-	12.9091	1.42e-05	0.0763	AAACAGGAAGTG
ELF1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	75	86	+	12.9091	1.42e-05	0.0763	AAACAGGAAGTG
ELF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	91	102	+	12.9091	1.42e-05	0.0763	AAGGCGGAAGTA
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	36	46	+	13.7869	1.42e-05	0.0342	CCGGAAGTTGT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	71	81	+	13.7869	1.42e-05	0.0342	CCGGAAGTTGT
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	69	79	-	13.7869	1.42e-05	0.0342	CCGGAAGTTGT
PLAG1	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	33	46	-	10.1327	1.42e-05	0.0605	GGGGCGCTCGGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	74	87	-	10.1327	1.42e-05	0.0605	GAGGCTGTGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	74	87	-	10.1327	1.42e-05	0.0605	GAGGCTGTGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	74	87	-	10.1327	1.42e-05	0.0605	GAGGCTGTGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	74	87	-	10.1327	1.42e-05	0.0605	GAGGCTGTGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	74	87	-	10.1327	1.42e-05	0.0605	GAGGCTGTGGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	81	94	-	10.1327	1.42e-05	0.0605	GGGGCGCTCGGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	21	34	+	10.1327	1.42e-05	0.0605	GGGGCGCTCGGCGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	21	34	+	10.1327	1.42e-05	0.0605	GGGGCGCTCGGCGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	69	82	+	10.1327	1.42e-05	0.0605	GGGGCGCTCGGCGG
KLF5	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	37	46	+	14.0408	1.42e-05	0.00897	TCCCCACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	51	60	+	14.0408	1.42e-05	0.00897	TCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	69	78	-	14.0408	1.42e-05	0.00897	TCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	69	78	-	14.0408	1.42e-05	0.00897	TCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	69	78	-	14.0408	1.42e-05	0.00897	TCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	69	78	-	14.0408	1.42e-05	0.00897	TCCCCACCCA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	77	+	14.0612	1.42e-05	0.12	GGCAGCTGCAA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	77	+	14.0612	1.42e-05	0.12	GGCAGCTGCAA
Tcf21	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	31	44	-	11.5395	1.42e-05	0.557	GCCACAGCTGTCGA
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	71	84	+	11.5395	1.42e-05	0.557	GCCACAGCTGTCGA
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	71	84	+	11.5395	1.42e-05	0.557	GCCACAGCTGTCGA
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	26	36	-	14.0345	1.42e-05	0.0326	GGGAGGGAAGT
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	26	36	-	14.0345	1.42e-05	0.0326	GGGAGGGAAGT
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	20	33	+	12.9857	1.42e-05	0.196	AAACCACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	20	33	+	12.9857	1.42e-05	0.196	AAACCACGTCATCA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	31	44	-	12.9857	1.42e-05	0.196	AAACCACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	31	44	-	12.9857	1.42e-05	0.196	AAACCACGTCATCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	71	84	+	12.9857	1.42e-05	0.196	AAACCACGTCATCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	82	95	-	12.9857	1.42e-05	0.196	AAACCACGTCATCA
ELF3	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	32	44	-	12.2414	1.42e-05	0.108	ATCCCGGAAGCGA
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	13.1972	1.42e-05	0.07	ACCGGAAGCA
EGR1	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	28	+	13.25	1.42e-05	0.0093	GGCCCGCCCACGTA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	17	30	-	13.25	1.42e-05	0.0093	CTCCCTCCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	17	30	-	13.25	1.42e-05	0.0093	CTCCCTCCGCCGCT
EGR1	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	35	48	-	13.25	1.42e-05	0.0093	CTGCCTCCTCCGCG
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	51	64	+	13.25	1.42e-05	0.0093	GCACCGCCTCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	44	57	-	13.25	1.42e-05	0.0093	GTCCCGCCCCTTCC
EGR1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	71	+	13.25	1.42e-05	0.0093	GTCCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	51	64	-	13.25	1.42e-05	0.0093	GCACCGCCTCCTCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	51	64	-	13.25	1.42e-05	0.0093	GCACCGCCTCCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	87	100	-	13.25	1.42e-05	0.0093	GGCCCGCCCACGTA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	87	100	-	13.25	1.42e-05	0.0093	GGCCCGCCCACGTA
TCF3	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	3	12	+	13.4231	1.42e-05	0.38	TACACCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	84	93	-	13.4231	1.42e-05	0.38	TACACCTGCG
TCF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	84	93	-	13.4231	1.42e-05	0.38	TACACCTGCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	12	31	-	8.59633	1.42e-05	0.0407	CCCCACGCCACAGCCCCCCC
RREB1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	65	84	-	8.59633	1.42e-05	0.0407	CCCCAACCCGCGCGCCCCCG
RREB1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	31	50	+	8.59633	1.42e-05	0.0407	CCCCAACCCGCGCGCCCCCG
SP2	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	4	18	+	13.3621	1.42e-05	0.00545	TCCCCGCCCTGCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	12	26	+	13.3621	1.42e-05	0.00545	GACCCGCCCCTCACT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	12	26	+	13.3621	1.42e-05	0.00545	GACCCGCCCCTCACT
SP2	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	25	39	+	13.3621	1.42e-05	0.00545	CCTCCTCCCCCTGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	22	36	-	13.3621	1.42e-05	0.00545	TCCCCGCCCTGCTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	22	36	-	13.3621	1.42e-05	0.00545	TCCCCGCCCTGCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	57	71	-	13.3621	1.42e-05	0.00545	CGCCCACCCCCTGCT
SP2	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	76	90	-	13.3621	1.42e-05	0.00545	CCTCCTCCCCCTGCG
SP2	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	97	111	-	13.3621	1.42e-05	0.00545	TCCCCGCCCTGCTCC
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	14.197	1.42e-05	1	AGCATATGTC
MYF6	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	-	13.5303	1.42e-05	1	AACAGCTGCT
MYF6	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	+	13.5303	1.42e-05	1	AACAGCTGCT
MYF6	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	-	13.5303	1.42e-05	1	AACAGCTGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	+	13.2551	1.43e-05	0.0857	TCCCCTCGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	+	13.2551	1.43e-05	0.0857	TCCCCTCGGGCG
Hoxd3	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	69	84	+	13.039	1.43e-05	1	TTCGGGTAATTAAGGT
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	27	40	-	11.8286	1.43e-05	0.0932	CGCTTACGTCATCA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	27	40	-	11.8286	1.43e-05	0.0932	CGCTTACGTCATCA
Sox6	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	12	21	+	13.8286	1.43e-05	0.649	CCTTTGTCTC
Sox6	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	75	84	+	13.8286	1.43e-05	0.649	CCTTTGTCTC
Sox6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	75	84	-	13.8286	1.43e-05	0.649	CCTTTGTCTC
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	75	84	-	13.8286	1.43e-05	0.649	CCTTTGTCTC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	75	84	-	13.8286	1.43e-05	0.649	CCTTTGTCTC
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	75	84	-	13.8286	1.43e-05	0.649	CCTTTGTCTC
Rfx1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	5	18	+	13.069	1.43e-05	0.1	CTCCCCCCGGCAAC
Rfx1	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	88	101	+	13.069	1.43e-05	0.1	CTCCCCCCGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	14	27	-	13.069	1.43e-05	0.1	CTCCCCCCGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	14	27	-	13.069	1.43e-05	0.1	CTCCCCCCGGCAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	97	110	-	13.069	1.43e-05	0.1	CTCCCCCCGGCAAC
HEY2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	13.7069	1.43e-05	0.16	GTCACGTGCG
HEY2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	13.7069	1.43e-05	0.16	GTCACGTGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	47	61	+	12.6857	1.43e-05	0.0859	AGGGGGGGAGGGGCA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	54	68	-	12.6857	1.43e-05	0.0859	AGGGGGGGAGGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	54	68	-	12.6857	1.43e-05	0.0859	AGGGGGGGAGGGGCA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	44	+	8.58716	1.43e-05	0.0407	CCCACCCCCCCCCCCCCCCG
MAFK	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	95	109	+	13.7111	1.43e-05	0.567	GTACGTCAGCAAATT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	36	50	-	13.7111	1.43e-05	0.567	GTACGTCAGCAAATT
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	36	50	-	13.7111	1.43e-05	0.567	GTACGTCAGCAAATT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	40	+	12.8909	1.43e-05	0.0992	CGTGACGTCATG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	40	+	12.8909	1.43e-05	0.0992	CGTGACGTCATG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	40	+	12.8909	1.43e-05	0.0992	CGTGACGTCATG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	40	+	12.8909	1.43e-05	0.0992	CGTGACGTCATG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	40	+	12.8909	1.43e-05	0.0992	CGTGACGTCATG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	22	35	-	10.1224	1.43e-05	0.0605	GGGGGGGTGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	22	35	-	10.1224	1.43e-05	0.0605	GGGGGGGTGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	22	35	-	10.1224	1.43e-05	0.0605	GGGGGGGTGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	22	35	-	10.1224	1.43e-05	0.0605	GGGGGGGTGGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	22	35	-	10.1224	1.43e-05	0.0605	GGGGGGGTGGGGTG
GLI2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	60	71	+	13.2931	1.43e-05	0.33	GCGCCCACCCCG
ZNF263	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	61	81	-	12.5306	1.43e-05	0.00797	GGGGCGGGCGGGGAGGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	34	54	+	12.5306	1.43e-05	0.00797	GGGGCGGGCGGGGAGGGAGGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	37	+	14.0899	1.43e-05	0.163	TCCACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	37	+	14.0899	1.43e-05	0.163	TCCACGTGT
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	23	31	-	14.0899	1.43e-05	0.163	TCCACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	80	88	-	14.0899	1.43e-05	0.163	TCCACGTGT
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	80	88	-	14.0899	1.43e-05	0.163	TCCACGTGT
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	69	79	-	13.2636	1.43e-05	0.52	AGGGTTACACC
Spz1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	69	79	-	13.2636	1.43e-05	0.52	AGGGTTACACC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	69	79	-	13.2636	1.43e-05	0.52	AGGGTTACACC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	69	79	-	13.2636	1.43e-05	0.52	AGGGTTACACC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	69	79	+	13.2636	1.43e-05	0.52	AGGGTTACACC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	69	79	+	13.2636	1.43e-05	0.52	AGGGTTACACC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	52	72	+	12.5	1.43e-05	0.13	TTTTTTTTTCATTTCCTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	52	72	+	12.5	1.43e-05	0.13	TTTTTTTTTCATTTCCTTTTT
SP4	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	66	82	+	9.10909	1.43e-05	0.0132	CAGAACCCGCCTCCACT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	-	13.4545	1.43e-05	0.0397	CGCCGGAGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	+	13.4545	1.43e-05	0.0397	CGCCGGAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	+	13.4545	1.43e-05	0.0397	CGCCGGAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	+	13.4545	1.43e-05	0.0397	CGCCGGAGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	+	13.4545	1.43e-05	0.0397	CGCCGGAGGCT
SP8	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	19	30	+	13.2895	1.43e-05	0.0164	GCCACTCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	33	44	-	13.2895	1.43e-05	0.0164	GCTCCGCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	33	44	-	13.2895	1.43e-05	0.0164	GCTCCGCCCACT
SP8	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	85	96	-	13.2895	1.43e-05	0.0164	GCCACTCCCCGC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	90	102	-	13.4426	1.43e-05	0.343	CTGTCTCTCTCCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	90	102	-	13.4426	1.43e-05	0.343	CTGTCTCTCTCCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	90	102	-	13.4426	1.43e-05	0.343	CTGTCTCTCTCCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	90	102	-	13.4426	1.43e-05	0.343	CTGTCTCTCTCCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	+	13.4918	1.43e-05	0.0553	TGCCGGCAGGGCT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	13.3793	1.43e-05	0.188	GACACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	13.3793	1.43e-05	0.188	GACACGTGAT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	47	66	+	8.57798	1.43e-05	0.0407	CCCCCCCCGCCCCCCCCCCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	47	66	+	8.57798	1.43e-05	0.0407	CCCCCCCCGCCCCCCCCCCG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	76	-	12.7049	1.43e-05	0.0673	TTCCCGGAAGCA
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	36	46	+	13.32	1.43e-05	1	TACGTAAACAT
FOXC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	36	46	+	13.32	1.43e-05	1	TACGTAAACAT
IRF9	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	24	38	-	3.87273	1.43e-05	0.409	TTGGAAACCGAAAAC
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	77	91	+	3.87273	1.43e-05	0.409	TTGGAAACCGAAAAC
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	14	25	+	13.5408	1.43e-05	0.141	GGCCTGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	14	25	+	13.5408	1.43e-05	0.141	GGCCTGGGGCCG
Gfi1b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	39	49	+	13.7241	1.43e-05	0.349	CAATCTGAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	39	49	+	13.7241	1.43e-05	0.349	CAATCTGAGCA
Gfi1b	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	66	76	-	13.7241	1.43e-05	0.349	CAATCTGAGCA
TGIF2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	-	11.6239	1.43e-05	0.591	TGACAGGTGCCC
TGIF2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	+	11.6239	1.43e-05	0.591	TGACAGGTGCCC
HINFP	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	22	33	-	13.6212	1.43e-05	0.109	CAGCCTCCGCGG
HINFP	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	82	93	+	13.6212	1.43e-05	0.109	CAGCCTCCGCGG
HINFP	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	90	101	+	13.6212	1.43e-05	0.109	CAGCCTCCGCGG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	22	36	-	10.8793	1.43e-05	0.0287	TCCCGCCCCCTCGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	42	56	+	10.8793	1.43e-05	0.0287	TCCCGCCCCCTCGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	42	56	+	10.8793	1.43e-05	0.0287	TCCCGCCCCCTCGTC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	80	92	-	7.89796	1.43e-05	0.233	TGGGGAACTCCCA
SP3	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	27	37	+	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	104	114	+	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	1	11	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	1	11	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	22	32	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	22	32	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	78	88	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	78	88	-	13.1463	1.43e-05	0.0103	GCCACACCCAA
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	20	34	+	13.3448	1.44e-05	0.0055	ATCCCTCCTCCTCCT
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	14	29	-	-1.94231	1.44e-05	0.317	CCGCCCCCCGCGGCGC
USF2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	33	43	-	13.898	1.44e-05	0.0713	AGCATGTGACT
USF2	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	34	44	-	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	98	108	-	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	7	17	+	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	7	17	+	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	7	17	+	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	7	17	+	13.898	1.44e-05	0.0713	GGCATGTGATC
USF2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	29	39	+	13.898	1.44e-05	0.0713	AGCATGTGACT
USF2	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	30	40	+	13.898	1.44e-05	0.0713	AGCATGTGACT
USF2	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	71	81	+	13.898	1.44e-05	0.0713	GGCATGTGATC
PAX5	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	21	39	+	13.129	1.44e-05	0.137	CGAACAAGCGGGGCGTGGC
YY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	28	38	+	13.5758	1.44e-05	0.269	GGCCGCCATAA
YY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	28	38	+	13.5758	1.44e-05	0.269	GGCCGCCATAA
YY2	WILDTYPE__mrna.noflip.NA__chr12:49582776..49582890,-__1287.1.0.0	93	103	+	13.5758	1.44e-05	0.269	CTCCGCCATCA
YY2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	101	111	-	13.5758	1.44e-05	0.269	GGCCGCCATAA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	26	37	+	11.9184	1.44e-05	0.08	CCTGACGTCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	26	37	+	11.9184	1.44e-05	0.08	CCTGACGTCAGC
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	18	29	-	11.9184	1.44e-05	0.08	CCTGACGTCAGC
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	33	44	+	11.9184	1.44e-05	0.08	CCTGACGTCAGC
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	71	82	+	11.9184	1.44e-05	0.08	CCTGACGTCAGC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	93	104	+	11.9184	1.44e-05	0.08	CCTGACGTCAGC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	30	46	+	9.09091	1.44e-05	0.0133	TGAGCCCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	30	46	+	9.09091	1.44e-05	0.0133	TGAGCCCCGCCCCGCCG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	30	46	+	9.09091	1.44e-05	0.0133	TGAGCCCCGCCCCGCCG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	41	55	-	11.8714	1.44e-05	0.0969	TCTCCCCCGCGGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	41	55	-	11.8714	1.44e-05	0.0969	TCTCCCCCGCGGCGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	41	55	-	11.8714	1.44e-05	0.0969	TCTCCCCCGCGGCGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	41	55	-	11.8714	1.44e-05	0.0969	TCTCCCCCGCGGCGG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	41	55	-	11.8714	1.44e-05	0.0969	TCTCCCCCGCGGCGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	11	26	+	12.9818	1.44e-05	0.0335	GGCCGCCCACCCGCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	11	26	+	12.9818	1.44e-05	0.0335	GGCCGCCCACCCGCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	9	24	-	12.9818	1.44e-05	0.0335	CCCCGCCCCCGCCGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	9	24	-	12.9818	1.44e-05	0.0335	CCCCGCCCCCGCCGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	16	31	-	12.9818	1.44e-05	0.0335	GCCCGCCCTCGCCACC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	16	31	-	12.9818	1.44e-05	0.0335	GCCCGCCCTCGCCACC
EGR4	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	89	104	-	12.9818	1.44e-05	0.0335	GGCCGCCCACCCGCCC
SREBF1	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	30	39	-	14.0244	1.44e-05	0.472	GTCACCCGAC
SREBF1	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	76	85	+	14.0244	1.44e-05	0.472	GTCACCCGAC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	13	23	+	13.8364	1.44e-05	0.0365	GCGCTTCCGGA
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	23	33	+	13.8364	1.44e-05	0.0365	CCGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	34	-	13.8364	1.44e-05	0.0365	GTGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	34	-	13.8364	1.44e-05	0.0365	GTGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	34	-	13.8364	1.44e-05	0.0365	GTGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	34	-	13.8364	1.44e-05	0.0365	GTGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	34	-	13.8364	1.44e-05	0.0365	GTGCTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	43	53	-	13.8364	1.44e-05	0.0365	CCGTTTCCGGG
ELK4	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	62	72	+	13.8364	1.44e-05	0.0365	CCGTTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	82	92	-	13.8364	1.44e-05	0.0365	CCGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	82	92	-	13.8364	1.44e-05	0.0365	CCGTTTCCGGG
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	76	+	14.0816	1.44e-05	0.0976	AACAGCTGCCA
Myog	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	58	68	-	14.0816	1.44e-05	0.0976	AACAGCTGCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	11	24	+	12.5172	1.44e-05	0.0195	GGCCCCGCCTCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	11	24	+	12.5172	1.44e-05	0.0195	GGCCCCGCCTCCCA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	11	24	+	12.5172	1.44e-05	0.0195	GGCCCCGCCTCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	11	24	+	12.5172	1.44e-05	0.0195	GGCCCCGCCTCCCA
KLF14	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	95	108	+	12.5172	1.44e-05	0.0195	CGCCCCGCCCCCGA
KLF14	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	7	20	-	12.5172	1.44e-05	0.0195	CGCCCCGCCCCCGA
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	47	60	-	10.7234	1.44e-05	0.0959	GCACCCCTGCAGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	47	60	-	10.7234	1.44e-05	0.0959	GCACCCCTGCAGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	86	99	-	10.7234	1.44e-05	0.0959	GCACCCCTGCAGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	86	99	-	10.7234	1.44e-05	0.0959	GCACCCCTGCAGCG
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	96	107	-	14.1636	1.44e-05	1	AGACATATGCTC
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	66	80	-	12.6714	1.44e-05	0.086	TGGGGGCGAAGGCCG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	69	82	-	8.4	1.44e-05	0.127	GGAAAGAGGAAGGG
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	14	24	-	13.7308	1.44e-05	0.00624	GCTCCGCCTCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	33	43	+	13.7308	1.44e-05	0.00624	GCTCCGCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	89	99	+	13.7308	1.44e-05	0.00624	TCCCCGCCCTT
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	31	51	+	12.4839	1.44e-05	0.13	CCCCCCTTTCCTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	31	51	+	12.4839	1.44e-05	0.13	CCCCCCTTTCCTTTTTTTTTT
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	+	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	-	11.5273	1.44e-05	0.357	ACTATTTATAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	7	20	-	13.2308	1.44e-05	0.00937	CCCCCGCCTCCTTG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	7	20	-	13.2308	1.44e-05	0.00937	CCCCCGCCTCCTTG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	7	20	-	13.2308	1.44e-05	0.00937	CCCCCGCCTCCTTG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	7	20	-	13.2308	1.44e-05	0.00937	CCCCCGCCTCCTTG
EGR1	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	63	+	13.2308	1.44e-05	0.00937	GCTCCGCCCACAGA
EGR1	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	52	65	-	13.2308	1.44e-05	0.00937	GCTCCGCCCACAGA
EGR1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	108	+	13.2308	1.44e-05	0.00937	CCCCCGCCTCCTTG
Hes1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	10.993	1.44e-05	0.0721	GGCACGTGAC
Hes1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	10.993	1.44e-05	0.0721	GGCACGTGAC
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	10	24	+	13.6731	1.44e-05	0.0859	CGGCGGGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	10	24	+	13.6731	1.44e-05	0.0859	CGGCGGGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	7	21	-	13.6731	1.44e-05	0.0859	TCAACAACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	7	21	-	13.6731	1.44e-05	0.0859	TCAACAACCAATCAG
EHF	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	54	65	+	13.2295	1.44e-05	0.0902	AAACCGGAAGCA
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	61	-	13.2295	1.44e-05	0.0902	AAACCGGAAGCA
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	61	-	13.2295	1.44e-05	0.0902	AAACCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	61	-	13.2295	1.44e-05	0.0902	AAACCGGAAGCA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	61	-	13.2295	1.44e-05	0.0902	AAACCGGAAGCA
EN2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	+	11.6949	1.44e-05	1	GCCAATTACG
EN2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	+	11.6949	1.44e-05	1	GCCAATTACG
EN2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	-	11.6949	1.44e-05	1	GCCAATTACG
EN2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	-	11.6949	1.44e-05	1	GCCAATTACG
EN2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	+	11.6949	1.44e-05	1	GCCAATTACG
EN2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	-	11.6949	1.44e-05	1	GCCAATTACG
Rarb(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	28	44	-	3.80303	1.44e-05	0.785	GGGTCGAGGCGAGGCCA
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	28	44	-	3.80303	1.44e-05	0.785	GGGTCGAGGCGAGGCCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	28	44	-	3.80303	1.44e-05	0.785	GGGTCGAGGCGAGGCCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	28	44	-	3.80303	1.44e-05	0.785	GGGTCGAGGCGAGGCCA
Rarb(var.2)	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	71	87	+	3.80303	1.44e-05	0.785	GGGTCGAGGCGAGGCCA
Bcl6	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	55	68	+	13.3226	1.44e-05	0.267	TTTCCTGGAGTGGC
Hoxa9	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	104	114	-	13.5526	1.44e-05	1	CCTATCAATCA
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	79	90	-	13.2586	1.44e-05	0.33	GCGCCCACAGTG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	79	90	-	13.2586	1.44e-05	0.33	GCGCCCACAGTG
TFEB	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	+	13.7115	1.44e-05	0.105	GTCACATGAC
Esrra	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	44	54	-	11.9273	1.44e-05	0.862	CTCAAGGTCAG
Esrra	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	61	71	+	11.9273	1.44e-05	0.862	CTCAAGGTCAG
SPIC	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	63	76	+	13.2394	1.44e-05	0.14	CAAAAGGGGAGGAA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	+	14.2364	1.44e-05	0.129	GCTGACTCATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	-	14.2364	1.44e-05	0.129	GCTGACTCATG
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	23	33	-	13.7143	1.44e-05	0.0873	CGCACGTGATC
USF1	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	92	+	13.7143	1.44e-05	0.0873	CGCACGTGATC
USF1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	99	109	+	13.7143	1.44e-05	0.0873	CCCAGGTGACC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	54	67	-	10.0918	1.44e-05	0.0605	GCGGCCTACGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	54	67	-	10.0918	1.44e-05	0.0605	GCGGCCTACGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	48	61	+	10.0918	1.44e-05	0.0605	GCGGCCTACGGGGA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	46	59	+	12.9571	1.44e-05	0.196	AGGCCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	46	59	+	12.9571	1.44e-05	0.196	AGGCCACGTGACCC
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	46	59	+	12.9571	1.44e-05	0.196	AGGCCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	46	59	+	12.9571	1.44e-05	0.196	AGGCCACGTGACCC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	46	59	+	12.9571	1.44e-05	0.196	AGGCCACGTGACCC
SP8	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	41	52	-	13.2763	1.45e-05	0.0164	GCCACACCCCTC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	14	34	-	12.5102	1.45e-05	0.00804	AGAGGCGGGAGCGAGGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	41	61	+	12.5102	1.45e-05	0.00804	GGTGGCGGAGAAAAGGTAGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	81	101	+	12.5102	1.45e-05	0.00804	AGAGGCGGGAGCGAGGGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	92	112	+	12.5102	1.45e-05	0.00804	GGAGCTGGAGCGGGGAAGAAA
IRF8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	80	93	-	4.65455	1.45e-05	0.381	TCGAGACTGAAACT
IRF8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	80	93	-	4.65455	1.45e-05	0.381	TCGAGACTGAAACT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	72	+	13.6731	1.45e-05	0.0682	ACCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	72	+	13.6731	1.45e-05	0.0682	ACCGGAAGTT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	31	43	-	12.4848	1.45e-05	0.216	AGGGGACTTCCCT
SP4	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	1	17	+	9.07273	1.45e-05	0.0133	GAAGCTCCGCCTACACA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	23	-	13.7414	1.45e-05	0.151	CTGCCGGGAAGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	47	+	13.3636	1.45e-05	0.0548	CGCCCCCAGCCG
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	69	80	+	13.3636	1.45e-05	0.0548	CGCCCCCAGCCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	35	46	-	13.3636	1.45e-05	0.0548	CGCCCCCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	73	-	13.3636	1.45e-05	0.0548	TCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	73	-	13.3636	1.45e-05	0.0548	TCCCCGCGGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	68	79	-	13.3636	1.45e-05	0.0548	CGCCCCCAGCCG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	28	-	12.8727	1.45e-05	0.0992	CATGACGTCAGA
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	28	-	12.8727	1.45e-05	0.0992	CATGACGTCAGA
Klf12	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	44	58	+	12.0984	1.45e-05	0.0324	GGCCCCGCCCCATGG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	39	53	-	12.0984	1.45e-05	0.0324	TGCCCCGCCCTCCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	64	78	+	12.0984	1.45e-05	0.0324	TGCCCCGCCCTCCAG
Klf12	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	57	71	-	12.0984	1.45e-05	0.0324	GGCCCCGCCCCATGG
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	42	55	+	12.8033	1.45e-05	0.365	ATTCCCGTGGGATG
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	42	55	+	12.8033	1.45e-05	0.365	ATTCCCGTGGGATG
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	42	55	+	12.8033	1.45e-05	0.365	ATTCCCGTGGGATG
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	42	55	+	12.8033	1.45e-05	0.365	ATTCCCGTGGGATG
EBF1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	60	73	-	12.8033	1.45e-05	0.365	ATTCCCGTGGGATG
REL	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	59	68	+	13.2727	1.45e-05	0.228	GGGAGTTTCC
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	+	8.22951	1.45e-05	0.598	AGGCATGTGTCA
PKNOX2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	-	8.22951	1.45e-05	0.598	AGGCATGTGTCA
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	-	13.7571	1.45e-05	0.151	CACAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	+	13.7571	1.45e-05	0.151	CACAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	+	13.7571	1.45e-05	0.151	CACAGCTGCT
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	-	13.4754	1.45e-05	0.0553	TGCCCGGCGGGGC
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	+	13.4754	1.45e-05	0.0553	TGCCCGGCGGGGC
KLF13	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	29	46	+	9.58621	1.45e-05	0.125	CGACCACGCCTCTTGGCG
KLF13	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	69	86	-	9.58621	1.45e-05	0.125	CGACCACGCCTCTTGGCG
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	67	84	+	-2.07576	1.45e-05	1	GAGGGCAAAGGGTCTCTG
RARA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	67	84	+	-2.07576	1.45e-05	1	GAGGGCAAAGGGTCTCTG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	22	+	13.5517	1.45e-05	0.0947	CGCAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	22	+	13.5517	1.45e-05	0.0947	CGCAGCTGGG
NHLH1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	33	+	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	58	+	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	58	+	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	91	-	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	91	-	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	106	+	13.5517	1.45e-05	0.0947	GGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	106	+	13.5517	1.45e-05	0.0947	GGCAGCTGCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	32	42	+	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	34	44	+	13.3448	1.45e-05	0.0106	CCCACGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	34	44	+	13.3448	1.45e-05	0.0106	CCCACGCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	65	75	+	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	85	95	+	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	8	18	-	13.3448	1.45e-05	0.0106	AGCACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	8	18	-	13.3448	1.45e-05	0.0106	AGCACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	8	18	-	13.3448	1.45e-05	0.0106	AGCACGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	20	30	-	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	20	30	-	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	20	30	-	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	40	50	-	13.3448	1.45e-05	0.0106	GCCCAGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	63	73	-	13.3448	1.45e-05	0.0106	GCCACGCCCCA
ETV4	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13	1.45e-05	0.0832	ACCGGATGTC
ETV4	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13	1.45e-05	0.0832	ACCGGATGTC
FOXC2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	49	60	-	13.1287	1.45e-05	1	TAAATAAATAAA
E2F6	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	32	42	-	14	1.45e-05	0.0331	GCGCGGGAGAC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	60	73	-	12.5	1.45e-05	0.0195	GACTCCGCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	60	73	-	12.5	1.45e-05	0.0195	GACTCCGCCCCCCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	56	66	+	13.8	1.45e-05	0.063	CGCCTCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	56	66	+	13.8	1.45e-05	0.063	CGCCTCGGGCT
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	97	109	-	13.3143	1.45e-05	0.729	TTCCCAGATGTGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	33	47	-	13.1818	1.45e-05	0.266	AAAAAAGGAAAGGGG
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	33	47	-	13.1818	1.45e-05	0.266	AAAAAAGGAAAGGGG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	40	53	+	13.6818	1.45e-05	0.027	TCGTCCCGGGCCTC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	65	77	-	12.2069	1.45e-05	0.108	AACGCGGAAGCGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	65	77	-	12.2069	1.45e-05	0.108	AACGCGGAAGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	69	+	13.0909	1.45e-05	0.0974	GCCCCCCCCCCGTGC
TFAP2B	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	+	13.3455	1.45e-05	0.0893	TGCCCCGGGGGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	23	40	+	-6.30263	1.45e-05	0.0263	GGAAGGAAGCACCTAAGG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	38	51	-	8.81818	1.45e-05	0.379	GGGCCCCCAGGAAG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	38	51	-	8.81818	1.45e-05	0.379	GGGCCCCCAGGAAG
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	-	14.2553	1.45e-05	0.169	GCTGAGTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	+	14.2553	1.45e-05	0.169	GCTGAGTCATG
ETV5	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.6727	1.45e-05	0.0689	AGCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.6727	1.45e-05	0.0689	AGCGGAAGTG
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	11	21	+	13.6364	1.45e-05	0.041	AGTCACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	50	60	-	13.6364	1.45e-05	0.041	AGTCACACCCA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	44	58	+	13.5634	1.45e-05	0.341	CTTCAGTAAACACAC
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	35	49	-	13.5634	1.45e-05	0.341	CTTCAGTAAACACAC
SP2	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	29	43	+	13.3276	1.45e-05	0.00553	GCCCCGCCCTGTGTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	49	63	+	13.3276	1.45e-05	0.00553	GCCCCTCCTCTTAAC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	49	63	+	13.3276	1.45e-05	0.00553	GCCCCTCCTCTTAAC
SP2	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	71	85	+	13.3276	1.45e-05	0.00553	TCCCCTCCCTCTCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	25	39	-	13.3276	1.45e-05	0.00553	ACTCCGCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	25	39	-	13.3276	1.45e-05	0.00553	ACTCCGCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	30	44	-	13.3276	1.45e-05	0.00553	TCCCCTCCCTCTCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	30	44	-	13.3276	1.45e-05	0.00553	TCCCCTCCCTCTCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	47	61	-	13.3276	1.45e-05	0.00553	ACTCCGCCCCCACGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	47	61	-	13.3276	1.45e-05	0.00553	ACTCCGCCCCCACGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	48	62	-	13.3276	1.45e-05	0.00553	GCCCCACCTCCACGA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	48	62	-	13.3276	1.45e-05	0.00553	GCCCCACCTCCACGA
SP2	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	52	66	-	13.3276	1.45e-05	0.00553	GCCCCTCCTCTTAAC
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	5	22	-	12.622	1.45e-05	0.0702	GCGCCTCTGATTGGACAG
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	5	22	-	12.622	1.45e-05	0.0702	GCGCCTCTGATTGGACAG
SP1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	40	+	13.7115	1.45e-05	0.0063	TCCCCTCCCAC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	43	58	-	12.9636	1.45e-05	0.0336	GTCCGCCCACCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	43	58	-	12.9636	1.45e-05	0.0336	GTCCGCCCACCCCGCC
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	+	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
RFX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	-	10.3286	1.45e-05	0.106	TGTCTCCATGGCAGCG
HES5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	17	+	8.89655	1.46e-05	0.213	GCGCACGTGCCG
HES5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	40	+	8.89655	1.46e-05	0.213	GCGCACGTGCCG
HES5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	75	86	-	8.89655	1.46e-05	0.213	GCGCACGTGCCG
HES5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	98	109	-	8.89655	1.46e-05	0.213	GCGCACGTGCCG
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	53	62	+	13.6724	1.46e-05	0.659	CTTTTGTTTT
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	59	68	+	13.6724	1.46e-05	0.659	CTTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	59	68	+	13.6724	1.46e-05	0.659	CTTTTGTTTT
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	15	29	+	12.8939	1.46e-05	0.197	TCGCTTTCACTTTAC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	27	41	+	12.8939	1.46e-05	0.197	TCGCTTTCACTTTAC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	27	41	+	12.8939	1.46e-05	0.197	TCGCTTTCACTTTAC
TP73	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	-	12.2692	1.46e-05	0.578	GACGAGTTCGGGCTCGTC
TP73	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	+	12.2692	1.46e-05	0.578	GACGAGTTCGGGCTCGTC
TP73	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	97	114	+	12.2692	1.46e-05	0.578	GGCAGGTCGGATCACGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.7021	1.46e-05	0.0807	TCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.7021	1.46e-05	0.0807	TCCGGAAGTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.7021	1.46e-05	0.0807	TCCGGAAGTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.7021	1.46e-05	0.0807	TCCGGAAGTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.7021	1.46e-05	0.0807	TCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	13.5091	1.46e-05	0.0818	ACCGGATATG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	13.5091	1.46e-05	0.0818	ACCGGATATG
Myb	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	36	45	-	14.1803	1.46e-05	0.821	TAAACTGCCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	22	35	-	13.2115	1.46e-05	0.00946	CCACCGCCGCCGGC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	67	-	12.6885	1.46e-05	0.0673	GCGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	67	-	12.6885	1.46e-05	0.0673	GCGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	67	-	12.6885	1.46e-05	0.0673	GCGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	67	-	12.6885	1.46e-05	0.0673	GCGCCGGAAGTG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	29	42	+	12.4828	1.46e-05	0.0195	AGTCCCGCCCACCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	46	59	+	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	46	59	+	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	46	59	+	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	46	59	+	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	14	27	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	14	27	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	15	28	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	15	28	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	15	28	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	15	28	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	64	77	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	64	77	-	12.4828	1.46e-05	0.0195	AGCCCCGCCCCCGG
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	38	52	+	11.4737	1.46e-05	0.14	TAGGTGAGTCAGCTT
PAX1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	15	31	+	10.4	1.46e-05	0.48	GGCCCCGCATGGCCGGA
PAX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	84	100	-	10.4	1.46e-05	0.48	GGCCCCGCATGGCCGGA
PAX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	84	100	-	10.4	1.46e-05	0.48	GGCCCCGCATGGCCGGA
MIXL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	10.4375	1.46e-05	1	TCCAATTAAC
MIXL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	10.4375	1.46e-05	1	TCCAATTAAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	93	110	-	-6.32895	1.46e-05	0.0264	GCAAGAAAGGAAGAGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	93	110	-	-6.32895	1.46e-05	0.0264	GCAAGAAAGGAAGAGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	56	76	-	12.4898	1.46e-05	0.00811	GGGGGCGGGTGAGGGGAGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	56	76	-	12.4898	1.46e-05	0.00811	GGGGGCGGGTGAGGGGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	56	76	-	12.4898	1.46e-05	0.00811	GGGGGCGGGTGAGGGGAGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	59	79	-	12.4898	1.46e-05	0.00811	GAAGGCAGCGGCAGGGGGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	62	82	-	12.4898	1.46e-05	0.00811	AAGGGAGGGTGAAGGGATGAG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	1	12	+	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	1	12	+	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	15	26	+	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	15	26	+	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	5	16	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	5	16	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	5	16	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	5	16	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	31	42	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	65	76	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	65	76	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	73	84	-	13.2632	1.46e-05	0.0164	GCCCCGCCCGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	48	64	-	9.03636	1.46e-05	0.0134	GCGACTCCGCCCCCACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	48	64	-	9.03636	1.46e-05	0.0134	GCGACTCCGCCCCCACG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	93	104	+	13.5909	1.46e-05	0.109	CACGGTCCGCGC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	2	12	-	13.2	1.46e-05	0.00856	GAGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	2	12	-	13.2	1.46e-05	0.00856	GAGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	22	32	+	13.2	1.46e-05	0.00856	GAGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	22	32	+	13.2	1.46e-05	0.00856	GAGGCTGCGCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	1	17	+	12.8367	1.46e-05	0.338	GGTTTAGCAGGAAGTCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	79	95	-	12.8367	1.46e-05	0.338	GGTTTAGCAGGAAGTCA
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	20	33	-	11.7429	1.46e-05	0.0944	CTGTGACGTCAGCT
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	20	33	-	11.7429	1.46e-05	0.0944	CTGTGACGTCAGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	37	51	+	10.8276	1.46e-05	0.0287	CCCCGCCCCCACCAT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	37	51	+	10.8276	1.46e-05	0.0287	CCCCGCCCCCACCAT
EGR3	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	26	40	-	10.8276	1.46e-05	0.0287	GCCCGCCCCCTCGCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	33	43	+	13.6212	1.46e-05	0.0411	GCCCACGCCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	72	82	-	13.6212	1.46e-05	0.0411	GCCCACGCCCA
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	18	31	-	13.0345	1.46e-05	0.1	TTCACCTTGGAAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	18	31	-	13.0345	1.46e-05	0.1	TTCACCTTGGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	90	103	-	13.0345	1.46e-05	0.1	GCCACCCTAGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	90	103	-	13.0345	1.46e-05	0.1	GCCACCCTAGCGAC
FOXP1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	45	59	+	13.5493	1.47e-05	0.341	AAACAAAAAACAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	56	70	-	13.5493	1.47e-05	0.341	AAACAAAAAACAAAA
Stat6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	23	37	-	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	23	37	-	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Stat6	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	54	68	-	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	61	+	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Stat6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	61	+	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Stat6	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	92	+	13.8621	1.47e-05	0.392	TGCTTCCGGGGAAAC
Zfx	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	36	49	+	13.6667	1.47e-05	0.0272	TCCGGCTCGGCCTT
ELF3	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	68	80	-	12.1897	1.47e-05	0.108	GACCCGGATGTGG
ELF3	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	9	21	+	12.1897	1.47e-05	0.108	TTACCGGAAGTGA
ELF3	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	35	47	+	12.1897	1.47e-05	0.108	GACCCGGATGTGG
HNF4G	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	29	43	+	13.2885	1.47e-05	0.281	CTGGGCCAAAGTCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	72	86	-	13.2885	1.47e-05	0.281	CTGGGCCAAAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	72	86	-	13.2885	1.47e-05	0.281	CTGGGCCAAAGTCCG
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	21	32	-	13.0806	1.47e-05	0.281	GCGCCCCCCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	48	59	+	13.0806	1.47e-05	0.281	GCACCCACCGCC
RFX5	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	-	10.5862	1.47e-05	0.116	CGTTGCCATAGTTCCA
RFX5	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	+	10.5862	1.47e-05	0.116	CGTTGCCATAGTTCCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	+	13.4364	1.47e-05	0.0397	CGCCCCGGGCG
CREB3	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	86	99	-	12.9286	1.47e-05	0.196	CGGCCACGTTACCG
E2F4	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	1	11	-	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	33	43	+	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	104	114	+	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	104	114	+	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	104	114	+	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	104	114	+	14.1207	1.47e-05	0.0382	AGGCGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	6	23	-	-6.34211	1.47e-05	0.0264	GGAGGGAAGAAAAGCTGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	6	23	-	-6.34211	1.47e-05	0.0264	GGAGGGAAGAAAAGCTGG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	+	13.431	1.47e-05	0.0537	CGCCCCCCGGGGT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	-	13.431	1.47e-05	0.0537	CGCCCCCCGGGGT
E2F6	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	39	49	-	13.9828	1.47e-05	0.0334	AAGCGGGAAGG
Nr5a2	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	12	26	-	13.2586	1.47e-05	0.293	GTTTTCAAGGCCGGC
Nr5a2	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	47	61	+	13.2586	1.47e-05	0.293	GTTTTCAAGGCCGGC
Nr5a2	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	54	68	-	13.2586	1.47e-05	0.293	GTTTTCAAGGCCGGC
Nr5a2	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	89	103	+	13.2586	1.47e-05	0.293	GTTTTCAAGGCCGGC
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	97	109	-	13.7551	1.47e-05	0.367	AAGGGGTCAGCGG
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	4	11	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	23	30	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	55	62	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	77	84	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.1.0	99	106	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.0.0	99	106	-	12.3846	1.47e-05	0.798	TTGACAGG
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	27	34	-	13.6393	1.47e-05	0.972	TTGACAGC
PITX3	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	90	98	-	12.5577	1.47e-05	1	GTTAATCCC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	8	15	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	8	15	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	8	15	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	8	15	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	8	15	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	21	28	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	27	34	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	27	34	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	27	34	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	27	34	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	33	40	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	34	41	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	65	72	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	65	72	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	67	74	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	102	109	-	13.082	1.47e-05	0.377	GTGACGTA
Atf1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	107	114	-	13.082	1.47e-05	0.377	GTGACGTA
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	16	23	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	16	23	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	16	23	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	34	41	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	34	41	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	49	56	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	56	63	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	56	63	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	58	65	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	74	81	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	76	83	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	82	89	+	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	106	113	+	13.4444	1.47e-05	0.522	AAGGTCAC
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	39	46	-	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	39	46	-	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	50	-	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	82	89	-	13.0862	1.47e-05	0.762	AGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	39	46	-	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	39	46	-	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	50	-	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	82	89	-	13.7347	1.47e-05	0.811	AGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	39	46	-	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	39	46	-	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	50	-	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	82	89	-	15.1633	1.47e-05	0.606	AGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	39	46	-	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	39	46	-	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	50	-	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	82	89	-	15.4423	1.47e-05	0.661	AGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	39	46	-	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	39	46	-	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	50	-	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	82	89	-	14.2727	1.47e-05	0.793	AGGTGTGA
Atf3	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	10	17	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	10	17	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	23	30	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	34	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	35	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	35	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	35	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	35	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	36	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	32	39	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	32	39	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	52	59	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	58	65	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	69	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	78	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	78	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	71	78	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	71	78	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	78	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	83	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	80	87	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	81	88	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	81	88	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	83	90	+	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	101	108	+	14.3279	1.47e-05	0.287	GATGACGT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	2	9	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	2	9	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	3	10	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	3	10	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	4	11	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	4	11	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	4	11	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	4	11	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	5	12	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	2	9	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	2	9	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	3	10	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	3	10	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	4	11	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	4	11	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	4	11	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	4	11	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	11	18	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	5	12	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	16	23	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	16	23	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	17	24	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	17	24	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	11	18	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	19	26	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	19	26	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	20	27	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	20	27	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	20	27	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	20	27	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	20	27	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	16	23	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	16	23	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	23	30	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	17	24	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	17	24	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	19	26	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	19	26	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	26	33	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	20	27	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	20	27	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	20	27	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	20	27	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	27	34	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	20	27	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	28	35	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	28	35	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	29	36	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	23	30	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	30	37	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	31	38	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	32	39	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	32	39	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	32	39	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	32	39	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	32	39	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	26	33	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	27	34	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	35	42	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	28	35	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	35	42	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	35	42	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	28	35	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	35	42	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	29	36	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	37	44	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	37	44	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	30	37	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	38	45	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	31	38	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	32	39	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	32	39	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	39	46	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	39	46	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	32	39	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	32	39	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	32	39	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	40	47	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	40	47	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	35	42	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	35	42	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	35	42	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	35	42	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	43	50	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	44	51	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	37	44	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	37	44	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	45	52	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	45	52	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	38	45	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	45	52	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	39	46	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	39	46	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	40	47	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	40	47	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	48	55	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	43	50	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	44	51	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	45	52	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	45	52	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	45	52	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	54	61	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	54	61	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	54	61	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	48	55	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	60	67	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	54	61	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	54	61	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	54	61	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	64	71	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	65	72	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	60	67	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	68	75	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	69	76	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	69	76	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	70	77	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	64	71	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	65	72	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	73	80	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	68	75	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	75	82	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	75	82	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	76	83	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	69	76	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	69	76	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	77	84	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	70	77	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	78	85	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	79	86	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	73	80	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	75	82	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	75	82	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	82	89	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	76	83	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	77	84	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	85	92	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	85	92	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	78	85	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	79	86	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	88	95	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	88	95	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	82	89	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	91	98	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	85	92	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	85	92	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	92	99	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	95	102	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	88	95	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	88	95	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	97	104	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	91	98	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	92	99	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	95	102	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	103	110	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	97	104	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	105	112	+	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	103	110	-	13.5495	1.47e-05	0.0656	TGACGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	105	112	-	13.5495	1.47e-05	0.0656	TGACGTCA
TBX5	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	33	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	64	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	72	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	72	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	72	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	72	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	76	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	76	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	76	+	13.0862	1.47e-05	0.762	AGGTGTGA
TBX4	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	33	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	64	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	72	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	72	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	72	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	72	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	76	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	76	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	76	+	13.7347	1.47e-05	0.811	AGGTGTGA
TBX1	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	33	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	64	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	72	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	72	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	72	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	72	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	76	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	76	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	76	+	15.1633	1.47e-05	0.606	AGGTGTGA
TBX15	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	33	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	64	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	72	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	72	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	72	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	72	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	76	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	76	+	15.4423	1.47e-05	0.661	AGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	76	+	15.4423	1.47e-05	0.661	AGGTGTGA
MGA	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	33	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	64	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	72	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	72	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	72	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	72	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	76	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	76	+	14.2727	1.47e-05	0.793	AGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	76	+	14.2727	1.47e-05	0.793	AGGTGTGA
PITX3	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	17	25	+	12.5577	1.47e-05	1	GTTAATCCC
PITX3	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	63	71	+	12.5577	1.47e-05	1	GTTAATCCC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	7	14	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	7	14	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	22	29	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	22	29	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	25	32	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	25	32	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	27	34	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	28	35	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	28	35	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	29	36	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	32	39	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	33	40	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	46	53	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	47	54	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	50	57	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	50	57	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	56	63	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	56	63	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	56	63	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	56	63	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	56	63	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	76	83	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	81	88	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	85	92	-	14.3279	1.47e-05	0.287	GATGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	98	105	-	14.3279	1.47e-05	0.287	GATGACGT
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	1	8	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	1	8	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	6	13	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	9	16	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	9	16	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	9	16	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	9	16	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	20	27	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	20	27	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	26	33	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	36	43	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	41	48	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	41	48	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	41	48	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	41	48	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	56	63	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	81	88	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	87	94	+	13.082	1.47e-05	0.377	GTGACGTA
Atf1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	87	94	+	13.082	1.47e-05	0.377	GTGACGTA
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	9	16	-	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	25	32	-	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	26	33	-	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	59	66	-	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	83	90	-	13.4444	1.47e-05	0.522	AAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	83	90	-	13.4444	1.47e-05	0.522	AAGGTCAC
MEIS3	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	31	38	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	96	103	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	96	103	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	96	103	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	96	103	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	101	108	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	102	109	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	102	109	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	106	113	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	106	113	+	12.3846	1.47e-05	0.798	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	83	90	+	13.6393	1.47e-05	0.972	TTGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	83	90	+	13.6393	1.47e-05	0.972	TTGACAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	69	+	8.50459	1.47e-05	0.0415	CCCCCGCCCCCCCCCCGCGC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	+	13.3455	1.47e-05	0.0548	CGCCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	-	13.3455	1.47e-05	0.0548	CGCCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	-	13.3455	1.47e-05	0.0548	CGCCCCGGGCCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	93	+	13.0727	1.47e-05	0.0974	TGCCGCCCGGGGTGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	93	+	13.0727	1.47e-05	0.0974	TGCCGCCCGGGGTGC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	69	82	-	12.7705	1.47e-05	0.365	AGTCCCCAGAGAAG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	58	70	+	12.4394	1.47e-05	0.216	GGGGAGTTTCCCT
SP2	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	7	21	-	13.3103	1.47e-05	0.00558	CCCCCGCCCCATATC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	8	22	-	13.3103	1.47e-05	0.00558	GCTCCGCCCCATTGG
SP2	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	41	55	-	13.3103	1.47e-05	0.00558	TTTCCGCCCCCAGCG
Klf12	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	26	40	+	12.0656	1.47e-05	0.0324	GACCACGTCCAACAT
Klf12	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	54	68	+	12.0656	1.47e-05	0.0324	GGCCCCACCCACTCC
Klf12	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	47	61	-	12.0656	1.47e-05	0.0324	GGCCCCACCCACTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	75	89	-	12.0656	1.47e-05	0.0324	GACCACGTCCAACAT
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	75	89	-	12.0656	1.47e-05	0.0324	GACCACGTCCAACAT
TBX20	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	52	62	-	13.3788	1.47e-05	0.921	TGGGTGTGATG
TBX20	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	53	63	+	13.3788	1.47e-05	0.921	TGGGTGTGATG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	70	84	+	11.4605	1.47e-05	0.14	GTTATGACTCAGCCA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	70	84	+	11.4605	1.47e-05	0.14	GTTATGACTCAGCCA
ZNF143	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	45	60	-	7.36207	1.47e-05	0.276	CTCCCACAAGACACCA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	+	14.234	1.47e-05	0.169	AATGACTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	+	14.234	1.47e-05	0.169	AATGACTCATT
FOS	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	+	14.234	1.47e-05	0.169	AATGACTCATT
FOS	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	-	14.234	1.47e-05	0.169	AATGACTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	-	14.234	1.47e-05	0.169	AATGACTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	-	14.234	1.47e-05	0.169	AATGACTCATT
Rxra	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	85	98	-	7.84146	1.47e-05	0.264	GGGGTCCAAGCTCA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	40	57	+	-6.35526	1.47e-05	0.0264	CAAGGGGAGGAAGAAAGG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	61	74	+	12.4655	1.47e-05	0.0195	GCCCCCGCCCCCCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	25	38	-	12.4655	1.47e-05	0.0195	GCCCCCGCCCCCCA
SP4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	81	97	+	9.01818	1.47e-05	0.0135	CACACCCCGCCCGCTCA
ELK4	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	42	52	-	13.8182	1.47e-05	0.0372	CCGCTTCCTGT
ETS1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.6724	1.47e-05	0.076	ACCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	13.5577	1.47e-05	0.0872	TCCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	13.5577	1.47e-05	0.0872	TCCGGAAGTA
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	13.5577	1.47e-05	0.0872	TCCGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	13.5577	1.47e-05	0.0872	TCCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
ETS1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.6724	1.47e-05	0.076	ACCGGAAGCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	26	45	+	8.49541	1.47e-05	0.0415	CCCCCCCCCCCGCCCCCCGC
ELF4	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	63	74	+	12.6721	1.47e-05	0.0673	GACACGGAAGTA
ELF4	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	41	52	-	12.6721	1.47e-05	0.0673	GACACGGAAGTA
Bcl6	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	20	33	+	13.2903	1.47e-05	0.267	ATCCCTGGAAAGGC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	67	76	+	13.3761	1.47e-05	0.0327	AACCCCCCAC
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	29	+	11.7755	1.47e-05	0.0801	CATGACGTAAGC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	52	+	11.7755	1.47e-05	0.0801	CATGACGTAAGC
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	74	-	11.7755	1.47e-05	0.0801	CATGACGTAAGC
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	97	-	11.7755	1.47e-05	0.0801	CATGACGTAAGC
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	15	25	+	13.1818	1.47e-05	0.0086	GAGCCCGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	53	63	-	13.1818	1.47e-05	0.0086	GAGCCCGCGCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	-	13.2041	1.47e-05	0.0857	AGCCCCGGGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	-	13.2041	1.47e-05	0.0857	AGCCCCGGGGCC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	+	13.2041	1.47e-05	0.0857	AGCCCCGGGGCC
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	1	14	+	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	1	14	+	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	1	14	+	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	1	14	+	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	72	85	-	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	72	85	-	6.63636	1.47e-05	0.115	CGCTGACGTCAGAT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	+	14.2182	1.47e-05	0.129	TATGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	+	14.2182	1.47e-05	0.129	TATGACTCATG
EGR1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	3	16	+	13.1923	1.47e-05	0.00953	ACCCCGCCCCCTTT
EGR1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	25	38	-	13.1923	1.47e-05	0.00953	ACCCCGCCCCCTTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	73	+	13.1923	1.47e-05	0.00953	ACCCCACCCCCATC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	50	63	-	13.1923	1.47e-05	0.00953	GCCCCGCCTCTGCC
EGR1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	77	90	+	13.1923	1.47e-05	0.00953	ACCCCGCCCCCTTT
EGR1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	99	112	-	13.1923	1.47e-05	0.00953	ACCCCGCCCCCTTT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	11	20	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	11	20	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	11	20	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	11	20	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	23	32	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	23	32	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	36	45	-	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	55	64	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	70	79	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	70	79	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	70	79	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	70	79	+	13.2347	1.47e-05	0.0113	TGGGAGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	77	86	-	13.2347	1.47e-05	0.0113	TGGGAGTGGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	50	68	+	12.0164	1.47e-05	0.0801	TGGCCGCCAGGTAGCGCGT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	22	36	-	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	22	36	-	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	28	42	-	13.018	1.47e-05	0.138	GCGGGGGAGGGGGGA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	48	62	-	13.018	1.47e-05	0.138	GCGGGGGAGGGGGGA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	89	103	-	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	12	26	+	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	12	26	+	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	53	67	+	13.018	1.47e-05	0.138	GCGGGGGAGGGGGGA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	73	87	+	13.018	1.47e-05	0.138	GCGGGGGAGGGGGGA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	79	93	+	13.018	1.47e-05	0.138	GCGGGGCAGGGGGCG
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	20	30	-	13.4694	1.48e-05	0.531	CATGTGGGTAC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	20	30	-	13.4694	1.48e-05	0.531	CATGTGGGTAC
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	20	30	-	13.4694	1.48e-05	0.531	CATGTGGGTAC
PPARG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	82	101	-	10.9222	1.48e-05	1	CAGGGTCACTGTGAGCAACA
PPARG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	82	101	-	10.9222	1.48e-05	1	CAGGGTCACTGTGAGCAACA
PPARG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	82	101	-	10.9222	1.48e-05	1	CAGGGTCACTGTGAGCAACA
FOXP2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	56	66	-	14.0909	1.48e-05	0.77	CTGTAAACAAA
EHF	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	25	36	+	13.2131	1.48e-05	0.0902	GAGGCGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	25	36	+	13.2131	1.48e-05	0.0902	GAACCGGAAGTC
EHF	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	26	37	+	13.2131	1.48e-05	0.0902	ATACCGGAAGTG
EHF	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	48	59	+	13.2131	1.48e-05	0.0902	ATACCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	90	-	13.2131	1.48e-05	0.0902	GAACCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	90	-	13.2131	1.48e-05	0.0902	GAGGCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	90	-	13.2131	1.48e-05	0.0902	GAACCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	90	-	13.2131	1.48e-05	0.0902	GAGGCGGAAGTG
EHF	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	99	110	+	13.2131	1.48e-05	0.0902	GAGGCGGAAGTG
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	30	43	-	13.2113	1.48e-05	0.14	TGGAAGAGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	30	43	-	13.2113	1.48e-05	0.14	TGGAAGAGGAAGTC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	13	30	-	-6.36842	1.48e-05	0.0264	CAGAGGAAGTGAGGAAGG
KLF16	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	75	85	+	13.3276	1.48e-05	0.0108	GCCACGCCCGC
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	47	58	+	13.4143	1.48e-05	0.217	GGCACCCACCGC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	85	96	+	13.4143	1.48e-05	0.217	AGCGACCACAGT
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	9	26	-	13.3778	1.48e-05	0.965	CCCCACTCAGCACTACCT
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	9	26	-	13.3778	1.48e-05	0.965	CCCCACTCAGCACTACCT
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	41	52	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	41	52	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	41	52	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	74	85	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	74	85	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	74	85	+	13.3111	1.48e-05	1	GGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	74	85	+	13.3111	1.48e-05	1	GGATGCAATCGG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	13.0909	1.48e-05	0.189	GTCACGCGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	13.0909	1.48e-05	0.189	GTCACGCGAC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	6	25	-	8.48624	1.48e-05	0.0415	CCCCGTCCCACCCCCAACGT
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	60	70	+	13.5574	1.48e-05	0.121	AAGCGGAAACA
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	60	70	+	13.5574	1.48e-05	0.121	AAGCGGAAACA
ETV2	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	45	55	-	13.5574	1.48e-05	0.121	AAGCGGAAACA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	44	+	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	44	+	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	100	+	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	15	26	-	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	15	26	-	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	35	46	-	12.8182	1.48e-05	0.0992	TGTGACGTCACG
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	35	46	-	12.8182	1.48e-05	0.0992	TGTGACGTCACG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	23	33	+	13.7818	1.48e-05	0.063	TGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	82	92	-	13.7818	1.48e-05	0.063	TGCCTCGGGCA
Gata4	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	76	86	+	13.9655	1.48e-05	0.877	CCTTATCTGCA
RUNX3	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	70	79	-	13.4038	1.48e-05	0.439	AAACCACAAC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	19	33	+	12.8485	1.48e-05	0.197	TCTCATGACTCAGCC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	56	70	-	12.8485	1.48e-05	0.197	TCTCATGACTCAGCC
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	+	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
RFX4	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	-	12.8636	1.48e-05	0.109	CGCTGCCATGGAGACA
HES7	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	70	+	8.60345	1.48e-05	0.189	AGGCACGTGGCT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	23	43	-	12.4694	1.48e-05	0.00815	AAGGGCGGAGCGGGAGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	23	43	-	12.4694	1.48e-05	0.00815	AAGGGCGGAGCGGGAGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	23	43	-	12.4694	1.48e-05	0.00815	AAGGGCGGAGCGGGAGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	23	43	-	12.4694	1.48e-05	0.00815	AAGGGCGGAGCGGGAGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	46	66	-	12.4694	1.48e-05	0.00815	AGGGGAGAGGAGGAAAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	46	66	-	12.4694	1.48e-05	0.00815	AGGGGAGAGGAGGAAAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	75	95	-	12.4694	1.48e-05	0.00815	GGGGAAAGAAGGCAAGGAAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	8	28	+	12.4694	1.48e-05	0.00815	GGGGAAGGGGTGGGGGATGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	35	55	+	12.4694	1.48e-05	0.00815	GAAGGAGGGGAAGTGAATGAA
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	40	53	+	13.6515	1.48e-05	0.0273	TCCTCCCAGGCCTC
HNF1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	15	27	-	12.803	1.48e-05	0.417	GTAAATGGTTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	15	27	-	12.803	1.48e-05	0.417	GTAAATGGTTAAC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	31	45	-	12.0492	1.48e-05	0.0324	GACCACGCTCCCTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	31	45	-	12.0492	1.48e-05	0.0324	GACCACGCTCCCTCA
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	63	76	-	10.0306	1.48e-05	0.0605	GGGGGTCACGGCGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	39	52	+	10.0306	1.48e-05	0.0605	GGGGGTCACGGCGG
Myc	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	106	+	13.8909	1.48e-05	0.21	CCACGTGGTG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	-	13.4426	1.48e-05	0.0554	CCCCCCCGGGGCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	14	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	14	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	14	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	14	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	14	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	15	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	4	15	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	4	15	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	4	15	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	15	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	16	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	16	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	5	16	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	16	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	16	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	6	17	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	17	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	6	17	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	17	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	17	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	18	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	18	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	7	18	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	8	19	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	8	19	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	19	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	20	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	20	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	10	21	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	19	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	19	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	20	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	20	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	35	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	35	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	36	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	36	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	37	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	38	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	39	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	40	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	29	40	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	41	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	41	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	31	42	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	31	42	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	43	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	32	43	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	32	43	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	45	56	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	56	67	+	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	70	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	105	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	95	106	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	96	107	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	97	108	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	109	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	110	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	100	111	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	101	112	-	13.25	1.48e-05	0.0164	CCCCCCCCCCCC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	+	12.6735	1.48e-05	0.184	CGTGAGTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	+	12.6735	1.48e-05	0.184	CGTGAGTCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	+	12.6735	1.48e-05	0.184	TATGAGTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	-	12.6735	1.48e-05	0.184	TATGAGTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	-	12.6735	1.48e-05	0.184	TATGAGTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	-	12.6735	1.48e-05	0.184	CGTGAGTCATG
ELK1	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	13.383	1.48e-05	0.0452	TCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	13.383	1.48e-05	0.0452	TCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	13.383	1.48e-05	0.0452	TCCGGAAGTC
ELK1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	13.383	1.48e-05	0.0452	TCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	13.383	1.48e-05	0.0452	TCCGGAAGTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	13.383	1.48e-05	0.0452	TCCGGAAGTC
MYBL1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	27	38	+	13.2586	1.48e-05	1	GCGGTTAACTGC
MYBL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	101	112	-	13.2586	1.48e-05	1	GCGGTTAACTGC
MYBL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	101	112	-	13.2586	1.48e-05	1	GCGGTTAACTGC
MYBL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	101	112	-	13.2586	1.48e-05	1	GCGGTTAACTGC
MYBL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	101	112	-	13.2586	1.48e-05	1	GCGGTTAACTGC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	65	83	-	13.0806	1.48e-05	0.137	GACGGCAGCCGAGCATGCA
SP2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	26	+	13.2931	1.48e-05	0.00561	TCCCCGCCCCTGAGA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	25	39	+	13.2931	1.48e-05	0.00561	GTTCCGCCTTCGCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	25	39	+	13.2931	1.48e-05	0.00561	GTTCCGCCTTCGCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	39	+	13.2931	1.48e-05	0.00561	CCCCCTCCCCTTTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	39	+	13.2931	1.48e-05	0.00561	CCCCCTCCCCTTTTC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	49	63	+	13.2931	1.48e-05	0.00561	CCTCCTCCCCCACCC
SP2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	89	103	-	13.2931	1.48e-05	0.00561	TCCCCGCCCCTGAGA
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	3	12	-	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	3	12	-	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	29	38	+	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	29	38	+	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	40	49	+	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	66	75	-	14.0408	1.48e-05	0.18	GGGATTTTCC
RELA	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	77	86	-	14.0408	1.48e-05	0.18	GGGATTTTCC
ETV3	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
ETV3	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.1268	1.48e-05	0.07	ACCGGAAGCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	51	65	+	10.7931	1.48e-05	0.0287	CCCCGCCCCCCCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	51	65	+	10.7931	1.48e-05	0.0287	CCCCGCCCCCCCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	51	65	+	10.7931	1.48e-05	0.0287	CCCCGCCCCCCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	51	65	+	10.7931	1.48e-05	0.0287	CCCCGCCCCCCCCCC
TCF3	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	21	+	13.4038	1.48e-05	0.38	CGCACCTGTG
TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	103	-	13.4038	1.48e-05	0.38	CGCACCTGTG
TCF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	103	-	13.4038	1.48e-05	0.38	CGCACCTGTG
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	103	-	13.4038	1.48e-05	0.38	CGCACCTGTG
TCF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	103	-	13.4038	1.48e-05	0.38	CGCACCTGTG
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	-	8.18033	1.48e-05	0.598	TGACAGGTGCCC
PKNOX2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	+	8.18033	1.48e-05	0.598	TGACAGGTGCCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	13.1341	1.48e-05	0.129	CTCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	13.1341	1.48e-05	0.129	CTCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	13.1341	1.48e-05	0.129	CTCACGTGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	13.1341	1.48e-05	0.129	CTCACGTGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	13.1341	1.48e-05	0.129	CTCACGTGAC
Hnf4a	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	9	24	+	8.36364	1.49e-05	0.227	GATTTCAAAGTCCAGC
Hnf4a	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	91	106	-	8.36364	1.49e-05	0.227	GATTTCAAAGTCCAGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	30	43	+	12.4483	1.49e-05	0.0196	AGGCCCGCCCACTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	30	43	+	12.4483	1.49e-05	0.0196	AGGCCCGCCCACTC
RXRG	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	107	-	7.23404	1.49e-05	0.347	GAGATTAAAGGTGA
ELF3	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	13	25	+	12.1552	1.49e-05	0.108	AAACAGGAAGTGG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	-	13.1837	1.49e-05	0.0857	TGCCCACGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	-	13.1837	1.49e-05	0.0857	TGCCCACGGGCG
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	20	38	-	12	1.49e-05	0.0801	TTCCCACCAGGTGCCAGAG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	20	38	-	12	1.49e-05	0.0801	TTCCCACCAGGTGCCAGAG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	47	65	+	12	1.49e-05	0.0801	CCGCCAGAGGGGGGAGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	47	65	+	12	1.49e-05	0.0801	CCGCCAGAGGGGGGAGGGG
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	55	69	-	1.34286	1.49e-05	0.656	GTGGTCATGTGGTCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	55	69	-	1.34286	1.49e-05	0.656	GTGGTCATGTGGTCA
RXRA::VDR	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	61	75	-	10.2844	1.49e-05	1	GGCTTATCAGGTTCA
Myod1	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	26	38	-	13.9796	1.49e-05	0.12	CACAGCTGTTTCT
ZIC4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	48	62	+	13.0545	1.49e-05	0.0974	GGCACCCCGGGGGGC
ZIC4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	53	67	-	13.0545	1.49e-05	0.0974	GGCACCCCGGGGGGC
EGR4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	27	42	-	12.9273	1.49e-05	0.0343	GCCCGCCCGCGCCCCG
MLXIPL	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	14.0152	1.49e-05	0.171	GTCACGTGGT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	14.0152	1.49e-05	0.171	GTCACGTGGT
MNT	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	13.2879	1.49e-05	0.247	AGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	13.2879	1.49e-05	0.247	CGCACGTGCT
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	13.2879	1.49e-05	0.247	CGCACGTGCT
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	13.2879	1.49e-05	0.247	CGCACGTGCT
MNT	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	13.2879	1.49e-05	0.247	CGCACGTGCT
MNT	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	13.2879	1.49e-05	0.247	AGCACGTGAC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	58	68	-	14.2449	1.49e-05	0.13	AAATGACTCAG
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	13	22	+	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	14	23	+	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	14	23	+	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	13	22	-	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	14	23	-	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	14	23	-	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	35	44	+	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	35	44	-	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	71	80	+	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	71	80	-	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	93	102	+	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	93	102	+	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	93	102	+	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	93	102	+	10.5	1.49e-05	0.0378	GGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	93	102	-	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	93	102	-	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	93	102	-	10.5	1.49e-05	0.0378	GGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	93	102	-	10.5	1.49e-05	0.0378	GGCGCGAGCC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	48	58	-	11.8364	1.49e-05	0.862	CTGAAGGTCAA
YY2	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	13	23	+	13.5152	1.49e-05	0.269	GGCCGCCATCT
YY2	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	90	100	-	13.5152	1.49e-05	0.269	GGCCGCCATCT
YY2	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	92	102	-	13.5152	1.49e-05	0.269	GGCCGCCATCT
SP4	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	47	63	+	8.98182	1.49e-05	0.0136	ATTGCTCCGCCCACAGA
SP4	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	52	68	-	8.98182	1.49e-05	0.0136	ATTGCTCCGCCCACAGA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	30	46	+	12.8061	1.49e-05	0.338	GGGTGAAAGGGCGTGCA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	17	34	+	12.5732	1.49e-05	0.0706	TTGGTTCTAATTGGCCAG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	25	42	-	12.5732	1.49e-05	0.0706	TTGGTTCTAATTGGCCAG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	25	42	-	12.5732	1.49e-05	0.0706	TTGGTTCTAATTGGCCAG
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	80	90	-	13.5909	1.49e-05	0.0415	AAACACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	80	90	-	13.5909	1.49e-05	0.0415	AAACACACCCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	17	30	+	13.1731	1.49e-05	0.00957	TCCCTTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	6	19	-	13.1731	1.49e-05	0.00957	CTTCCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	6	19	-	13.1731	1.49e-05	0.00957	CTTCCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	6	19	-	13.1731	1.49e-05	0.00957	CTTCCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	6	19	-	13.1731	1.49e-05	0.00957	CTTCCGCTCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	6	19	-	13.1731	1.49e-05	0.00957	CTTCCGCTCCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	34	47	-	13.1731	1.49e-05	0.00957	GCCCCGCCCTCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	80	93	-	13.1731	1.49e-05	0.00957	CCGCCGCCGCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	80	93	-	13.1731	1.49e-05	0.00957	CCGCCGCCGCCTGC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	96	109	+	13.1731	1.49e-05	0.00957	CCGCCGCCGCCTGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	71	90	+	8.45872	1.49e-05	0.0418	CACACACACACACACACCGG
SP1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	45	+	13.6731	1.49e-05	0.00642	ACCCCGCCCAC
SP1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	25	35	-	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	33	43	-	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	47	57	+	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	40	50	-	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	48	58	-	13.6731	1.49e-05	0.00642	CCCCCGCCCAT
SP1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	67	77	+	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	58	68	-	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	80	90	+	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	80	90	+	13.6731	1.49e-05	0.00642	GCTCCACCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	94	104	+	13.6731	1.49e-05	0.00642	GCTCCACCCCT
Klf12	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	29	43	+	12.0328	1.49e-05	0.0324	AGCCCCGCCCCTCTA
Klf12	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	72	86	-	12.0328	1.49e-05	0.0324	AGCCCCGCCCCTCTA
ETV2	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	30	40	+	13.5246	1.49e-05	0.121	CACCGGAAGCG
ETV2	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	44	54	+	13.5246	1.49e-05	0.121	CACCGGAAGCG
ETV2	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	29	-	13.5246	1.49e-05	0.121	CACCGGAAGCG
ETV2	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	71	-	13.5246	1.49e-05	0.121	CACCGGAAGCG
ETV2	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	85	-	13.5246	1.49e-05	0.121	CACCGGAAGCG
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	24	38	-	13.197	1.49e-05	0.0609	ATCTCGTGAGAACTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	27	41	-	13.197	1.49e-05	0.0609	ATCTCGTGAGAACTC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	27	41	-	13.197	1.49e-05	0.0609	ATCTCGTGAGAACTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	74	88	+	13.197	1.49e-05	0.0609	ATCTCGTGAGAACTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	77	91	+	13.197	1.49e-05	0.0609	ATCTCGTGAGAACTC
Foxk1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	79	95	-	13.3766	1.49e-05	1	GGAATGTAAACAGTGTG
Foxk1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	79	95	-	13.3766	1.49e-05	1	GGAATGTAAACAGTGTG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	12	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	12	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	12	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	23	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	24	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	26	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	33	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	33	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	33	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	35	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	35	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	35	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	35	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	36	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	38	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	38	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	40	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	40	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	44	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	44	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	60	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	60	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	65	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	67	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	67	+	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	74	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	89	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	97	+	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	3	13	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	3	13	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	15	25	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	18	28	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	20	30	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	36	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	30	40	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	30	40	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	45	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	45	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	41	51	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	48	58	-	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	71	-	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	71	-	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	75	85	-	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	77	87	-	13.1138	1.49e-05	0.0103	CCCCCGCCCTC
SP3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	82	92	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	89	99	-	13.1138	1.49e-05	0.0103	CCCCCGCCCCG
Znf423	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	30	44	+	9.24719	1.49e-05	0.175	ACAACCTCGGGGTGC
Znf423	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	29	43	-	9.24719	1.49e-05	0.175	ACAACCTCGGGGTGC
Znf423	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	72	86	+	9.24719	1.49e-05	0.175	ACAACCTCGGGGTGC
Znf423	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	71	85	-	9.24719	1.49e-05	0.175	ACAACCTCGGGGTGC
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	16	27	+	13.4655	1.49e-05	0.365	GGGACCACCAAT
Gabpa	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	26	36	+	13.7377	1.49e-05	0.0353	CCGGAAGTTCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	53	63	-	13.7377	1.49e-05	0.0353	GCGGAAGTGAT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	53	63	-	13.7377	1.49e-05	0.0353	GCGGAAGTGAT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	53	63	-	13.7377	1.49e-05	0.0353	GCGGAAGTGAT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	77	87	-	13.7377	1.49e-05	0.0353	GCGGAAGTGAT
Gabpa	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	79	89	-	13.7377	1.49e-05	0.0353	CCGGAAGTTCG
JUND(var.2)	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	47	-	13.7234	1.49e-05	0.311	CAGAATGACGTCAGA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	36	49	+	13.6364	1.49e-05	0.0273	CCGCCTCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	36	49	+	13.6364	1.49e-05	0.0273	CCGCCTCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	53	66	+	13.6364	1.49e-05	0.0273	CCGCCTCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	53	66	+	13.6364	1.49e-05	0.0273	CCGCCTCCGGCCTC
BATF3	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	85	98	+	6.59091	1.49e-05	0.115	GGGTGACGTCAGGG
BATF3	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	17	30	-	6.59091	1.49e-05	0.115	GGGTGACGTCAGGG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	34	44	+	13.3103	1.49e-05	0.0109	CGCACGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	97	107	+	13.3103	1.49e-05	0.0109	GCCCCCCCCAC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	8	18	-	13.3103	1.49e-05	0.0109	GCCCCCCCCAC
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	2	13	-	13.0645	1.49e-05	0.281	GCCACCCCCGAC
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	102	113	+	13.0645	1.49e-05	0.281	GCCACCCCCGAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	102	113	+	13.0645	1.49e-05	0.281	GCCACCCCCGAC
Mafb	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	84	95	+	13.2135	1.49e-05	0.581	ATAATGCTGACC
Mafb	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	95	106	+	13.2135	1.49e-05	0.581	AAACTGCTGAGA
Mafb	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	100	111	+	13.2135	1.49e-05	0.581	ATAATGCTGACC
ELF1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	27	-	12.7818	1.49e-05	0.0799	AAACCGGAAGCT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	97	111	-	10.7759	1.5e-05	0.0287	ACATGCCCACGCGCG
ATF7	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	85	98	+	11.6714	1.5e-05	0.0951	CCGTGACGTCAGAG
ATF7	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	17	30	-	11.6714	1.5e-05	0.0951	CCGTGACGTCAGAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	27	40	-	12.431	1.5e-05	0.0196	AGCCCCGCCTCCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	27	40	-	12.431	1.5e-05	0.0196	AGCCCCGCCTCCCT
KLF14	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	29	42	-	12.431	1.5e-05	0.0196	CGGCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	69	82	-	12.431	1.5e-05	0.0196	AGCCCCGCCTCCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	69	82	-	12.431	1.5e-05	0.0196	AGCCCCGCCTCCCT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	7	27	-	12.449	1.5e-05	0.00819	GGAGGGAGGGAGGGAGGGAGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	55	75	-	12.449	1.5e-05	0.00819	GGAGCTAGATAAAGAGGAAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	70	90	-	12.449	1.5e-05	0.00819	GGGGCGAGGGGAGGAGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	75	95	-	12.449	1.5e-05	0.00819	GGAAGGCGAGGAGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	75	95	-	12.449	1.5e-05	0.00819	GGAAGGCGAGGAGGAGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	25	45	+	12.449	1.5e-05	0.00819	GGGGCGAGGGGAGGAGGAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	32	52	+	12.449	1.5e-05	0.00819	GGTGGGGGTGGGGGTGGGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	40	60	+	12.449	1.5e-05	0.00819	GGAGCTAGATAAAGAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	89	109	+	12.449	1.5e-05	0.00819	AGAAGATGGAGGGAGGGATGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	89	109	+	12.449	1.5e-05	0.00819	AGAAGATGGAGGGAGGGATGG
GLIS2	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	65	+	11.9016	1.5e-05	0.176	CGCCCCCCGGGGTG
GLIS2	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	50	63	-	11.9016	1.5e-05	0.176	CGCCCCCCGGGGTG
E2F4	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	46	56	+	14.1034	1.5e-05	0.0387	CCGCGGGAAAA
E2F4	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	59	69	-	14.1034	1.5e-05	0.0387	CCGCGGGAAAA
PAX9	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	64	80	+	6.70909	1.5e-05	0.456	AGTCCCGCACCAACGCC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	35	51	-	6.70909	1.5e-05	0.456	AGTCCCGCACCAACGCC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	35	51	-	6.70909	1.5e-05	0.456	AGTCCCGCACCAACGCC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	35	51	-	6.70909	1.5e-05	0.456	AGTCCCGCACCAACGCC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	35	51	-	6.70909	1.5e-05	0.456	AGTCCCGCACCAACGCC
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	+	10.5345	1.5e-05	0.116	TGTTGACATAGTAACT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	62	82	+	12.4032	1.5e-05	0.13	TTCCGCTTTCGGTTCTTCCTC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	63	83	+	12.4032	1.5e-05	0.13	CAACAGTTTCTTTTTCTGCAT
GBX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	12.7015	1.5e-05	1	GCCAATTAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	69	+	13.2759	1.5e-05	0.00566	GCCCCTCCCATCGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	69	+	13.2759	1.5e-05	0.00566	GCCCCTCCCATCGGG
SP2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	14	28	-	13.2759	1.5e-05	0.00566	GCACCGCCCACGCCG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	91	109	+	11.9836	1.5e-05	0.0802	TGGCCGCCAGGTGACCCAG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	13	23	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	13	23	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	13	23	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	13	23	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	14	24	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	65	75	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	70	80	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	70	80	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	70	80	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	103	113	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	103	113	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	103	113	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	103	113	-	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	18	28	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	40	50	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	50	60	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	50	60	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	85	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	101	+	13.4182	1.5e-05	0.0397	CGCCCCCGGCC
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	5	16	+	13.1639	1.5e-05	0.0903	AACAAGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	5	16	+	13.1639	1.5e-05	0.0903	AACAAGGAAGTA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	25	37	+	12.1379	1.5e-05	0.108	CATCCGGAAGTTA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	25	37	+	12.1379	1.5e-05	0.108	CATCCGGAAGTTA
HESX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	-	12.4	1.5e-05	1	CCTAATTGGC
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	56	73	-	9.48276	1.5e-05	0.127	GTACGACGCCCACCTCTT
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	56	73	-	9.48276	1.5e-05	0.127	GTACGACGCCCACCTCTT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	98	107	-	12.8364	1.5e-05	0.702	ATGGCGCAAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	98	107	-	12.8364	1.5e-05	0.702	ATGGCGCAAC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	89	102	-	10.617	1.5e-05	0.0959	GGCGTCCTGCTGTG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	9	19	+	13.9388	1.5e-05	0.219	AGTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	9	19	+	13.9388	1.5e-05	0.219	AGTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	52	62	-	13.9388	1.5e-05	0.219	AGTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	52	62	-	13.9388	1.5e-05	0.219	AGTTCCAGGAA
NRF1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	7	17	+	13.1455	1.5e-05	0.00875	CCGCTTGCGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	+	13.5192	1.5e-05	0.0649	TGCCTGGGGCG
Stat6	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	72	86	-	13.8276	1.5e-05	0.392	GATTTACTGAGAAGT
Stat6	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	73	87	-	13.8276	1.5e-05	0.392	GATTTACTGAGAAGT
Stat6	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	28	42	+	13.8276	1.5e-05	0.392	GATTTACTGAGAAGT
Stat6	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	29	43	+	13.8276	1.5e-05	0.392	GATTTACTGAGAAGT
Gfi1	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	104	113	+	12.1341	1.5e-05	0.4	GAAATCACAG
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	30	39	-	12.1341	1.5e-05	0.4	GAAATCACAG
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	4	14	-	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	32	42	+	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	56	+	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	101	111	+	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	104	114	-	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	104	114	-	13.6538	1.5e-05	0.00645	CCCCCTCCCCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	27	44	+	-6.46053	1.5e-05	0.0268	GAGAAGGAGGAAGAAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	27	44	+	-6.46053	1.5e-05	0.0268	GAGAAGGAGGAAGAAGGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	28	+	13.4754	1.5e-05	0.0626	CGCCCTAGGGGCC
HIC2	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	33	41	+	12.1273	1.5e-05	0.266	ATGCCCGCC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	48	56	+	12.1273	1.5e-05	0.266	ATGCCCGCC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	55	63	-	12.1273	1.5e-05	0.266	ATGCCCGCC
HIC2	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	74	82	-	12.1273	1.5e-05	0.266	ATGCCCGCC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	13.6154	1.5e-05	0.105	ACCACGTGCC
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	29	-	13.25	1.5e-05	0.282	GGGGTTCAAAGCTCA
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	13.8077	1.51e-05	0.137	GTCACGTGCG
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	13.8077	1.51e-05	0.137	GTCACGTGCG
HOXA13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	48	57	+	13.1667	1.51e-05	1	CCAATAAAAG
HOXA13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	48	57	+	13.1667	1.51e-05	1	CCAATAAAAG
HOXA13	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	49	58	+	13.1667	1.51e-05	1	CCAATAAAAG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	28	43	+	7.27586	1.51e-05	0.276	GAGCCACCATGCCCCG
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	-	13.7455	1.51e-05	0.063	CGCCTGCGGCT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	13.6538	1.51e-05	0.0682	AGCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	12	22	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	12	22	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	21	31	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	21	31	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	26	36	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	34	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	42	52	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	68	78	+	12.9636	1.51e-05	0.0978	AACCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	73	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	73	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	81	91	+	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	89	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	89	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	90	100	+	12.9636	1.51e-05	0.0978	AACCGGAAGCG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	90	100	+	12.9636	1.51e-05	0.0978	AACCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	90	100	+	12.9636	1.51e-05	0.0978	AACCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	90	100	+	12.9636	1.51e-05	0.0978	AACCGGAAGCG
ELF5	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	94	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	103	-	12.9636	1.51e-05	0.0978	GCCCGGAAGTG
Bcl6	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	88	+	13.2581	1.51e-05	0.267	GTTCCTGGAAGCAG
Bcl6	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	113	+	13.2581	1.51e-05	0.267	GTTCCTGGAAGCAG
Bcl6	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	2	15	-	13.2581	1.51e-05	0.267	GTTCCTGGAAGCAG
Bcl6	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	27	40	-	13.2581	1.51e-05	0.267	GTTCCTGGAAGCAG
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	1	14	+	13.1538	1.51e-05	0.00964	GCGCCTCCTCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	24	37	+	13.1538	1.51e-05	0.00964	CGGCCGCCCACGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	24	37	+	13.1538	1.51e-05	0.00964	CGGCCGCCCACGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	47	60	-	13.1538	1.51e-05	0.00964	CTGCTGCCCACGCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	101	114	-	13.1538	1.51e-05	0.00964	GCGCCTCCTCCTCA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	12	25	+	12.4138	1.51e-05	0.0196	CGACCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	12	25	+	12.4138	1.51e-05	0.0196	CGACCCGCCCCTCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	55	68	+	12.4138	1.51e-05	0.0196	GGGCCCGCCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	12	23	+	13.2105	1.51e-05	0.0164	GACCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	12	23	+	13.2105	1.51e-05	0.0164	GACCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	13	24	+	13.2105	1.51e-05	0.0164	GACCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	13	24	+	13.2105	1.51e-05	0.0164	GACCCGCCCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	53	64	+	13.2105	1.51e-05	0.0164	ACCACGCCCTCT
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	49	64	-	10.5172	1.51e-05	0.116	CGTTGTCAGGGCGACC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	49	64	-	10.5172	1.51e-05	0.116	CGTTGTCAGGGCGACC
Rxra	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	95	108	-	7.76829	1.51e-05	0.264	GCGGTGAAAGGTTA
Rxra	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	7	20	+	7.76829	1.51e-05	0.264	GCGGTGAAAGGTTA
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	51	64	-	13.6212	1.51e-05	0.0273	TCCTCCCCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	51	64	-	13.6212	1.51e-05	0.0273	TCCTCCCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	98	111	+	13.6212	1.51e-05	0.0273	GCGGACGCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	98	111	+	13.6212	1.51e-05	0.0273	GCGGACGCGGCCTC
RREB1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	22	41	-	8.42202	1.51e-05	0.042	ACCTGCCCCACCCCCACCCC
RREB1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	74	93	+	8.42202	1.51e-05	0.042	ACCTGCCCCACCCCCACCCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	18	-	13.8	1.51e-05	0.0378	GCACTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	18	28	+	13.8	1.51e-05	0.0378	GCACTTCCTGT
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	45	60	+	8.30909	1.51e-05	0.227	AGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	45	60	+	8.30909	1.51e-05	0.227	AGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	80	95	+	8.30909	1.51e-05	0.227	AGGAGCAGAGTCCGGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	80	95	+	8.30909	1.51e-05	0.227	AGGAGCAGAGTCCGGC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	65	85	-	12.3871	1.51e-05	0.13	CACTTCTCTCTCTTTCTCTCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	93	113	-	12.3871	1.51e-05	0.13	CACTTCTCTCTCTTTCTCTCT
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	67	80	+	7.17021	1.51e-05	0.347	GGTGTGAAGGGTCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	38	48	+	13.1273	1.51e-05	0.00879	GCGCCGGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	38	48	+	13.1273	1.51e-05	0.00879	GCGCCGGCCCA
MAX	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	13.4615	1.51e-05	0.276	AGCACGTGGC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	57	66	+	13.5082	1.51e-05	0.389	TGCACCTGCT
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	57	66	+	13.5082	1.51e-05	0.389	TGCACCTGCT
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	77	-	13.5082	1.51e-05	0.389	TGCACCTGCT
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	77	-	13.5082	1.51e-05	0.389	TGCACCTGCT
MAX	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	13.4615	1.51e-05	0.276	AGCACGTGGC
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	13.4615	1.51e-05	0.276	AGCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	13.4615	1.51e-05	0.276	AGCACGTGGC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	36	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	36	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	39	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	60	69	+	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	60	69	+	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	98	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	98	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	98	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	106	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	111	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	111	-	13.5345	1.51e-05	0.0947	CCCAGCTGCT
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	1	15	-	12.803	1.51e-05	0.197	TAAAATGAGTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	22	36	+	12.803	1.51e-05	0.197	AGGCGTGAGCCAGCA
USF1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	12	-	13.6122	1.51e-05	0.089	GGCACGTGACG
USF1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	91	-	13.6122	1.51e-05	0.089	GGCACGTGACG
USF1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	34	+	13.6122	1.51e-05	0.089	GGCACGTGACG
USF1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	113	+	13.6122	1.51e-05	0.089	GGCACGTGACG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	-	13.1735	1.51e-05	0.0857	CGCCCTGGGGCC
Foxo1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.0.0	96	106	-	13.6552	1.51e-05	0.68	TCCTGTTGACT
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.1.0	96	106	-	13.6552	1.51e-05	0.68	TCCTGTTGACT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	-	12.5714	1.51e-05	0.184	CATGAGTCATA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	-	12.5714	1.51e-05	0.184	CATGAGTCATA
Crx	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	63	73	-	13.6724	1.51e-05	1	AAGAAGATTAA
Crx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	42	52	+	13.6724	1.51e-05	1	AAGAAGATTAA
Crx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	42	52	+	13.6724	1.51e-05	1	AAGAAGATTAA
Crx	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	64	74	+	13.6724	1.51e-05	1	AAGAAGATTAA
FOXA1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	33	47	+	13.7143	1.51e-05	0.6	TGCTTGTTTGCTTTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	18	32	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	18	32	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	18	32	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	18	32	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	50	64	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	50	64	+	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	41	55	-	12	1.51e-05	0.0324	GGCCCCGCCCTGGGA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	60	74	+	12	1.51e-05	0.0324	GGCCCCGCCCTGGGA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	60	74	+	12	1.51e-05	0.0324	GGCCCCGCCCTGGGA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	60	74	+	12	1.51e-05	0.0324	GGCCCCGCCCTGGGA
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	47	61	-	12	1.51e-05	0.0324	GGCCCCGCCCCTGGA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	47	61	-	12	1.51e-05	0.0324	GGCCCCGCCCCTGGA
Klf12	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	51	65	-	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	63	77	-	12	1.51e-05	0.0324	GGCCCCGCCCCCGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	25	45	-	12.4286	1.51e-05	0.00827	AGGGGCGGAGAAGGGGAGAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	25	45	-	12.4286	1.51e-05	0.00827	AGGGGCGGAGAAGGGGAGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	24	44	+	12.4286	1.51e-05	0.00827	AGGGGCGGAGAGAGAGGGCGG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	53	62	+	13.2752	1.51e-05	0.0335	GCCCCCCCCT
HEY1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	13.9273	1.51e-05	0.0969	GACACGTGAC
HEY1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	13.9273	1.51e-05	0.0969	GACACGTGAC
HEY1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	13.9273	1.51e-05	0.0969	GACACGTGAC
HEY1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	13.9273	1.51e-05	0.0969	GACACGTGAC
HEY1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	13.9273	1.51e-05	0.0969	GACACGTGAC
HEY1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	13.9273	1.51e-05	0.0969	GACACGTGAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	27	43	+	8.92727	1.52e-05	0.0138	CCTGCCCCGCCCCTGGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	46	62	+	8.92727	1.52e-05	0.0138	CGCGCCCCGCCCCTCGG
SP2	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	12	26	+	13.2586	1.52e-05	0.00569	TTCCCTCCTCCCGCT
SP2	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	40	+	13.2586	1.52e-05	0.00569	ACCCCTCCCCCCAGG
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	34	48	+	13.2586	1.52e-05	0.00569	ACCCCGCCCTTCCAG
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	57	71	+	13.2586	1.52e-05	0.00569	ACCCCGCCCTTCCAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	79	93	+	13.2586	1.52e-05	0.00569	AGCCCTCCTCCCGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	79	93	+	13.2586	1.52e-05	0.00569	AGCCCTCCTCCCGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	79	93	+	13.2586	1.52e-05	0.00569	AGCCCTCCTCCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	79	93	+	13.2586	1.52e-05	0.00569	AGCCCTCCTCCCGCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	14	28	-	13.2586	1.52e-05	0.00569	TCCCCTCCCCTCCGA
SP2	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	22	36	-	13.2586	1.52e-05	0.00569	AGCCCTCCTCCCGCC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	44	58	-	13.2586	1.52e-05	0.00569	ACCCCGCCCTTCCAG
SP2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	67	81	-	13.2586	1.52e-05	0.00569	ACCCCGCCCTTCCAG
SP2	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	75	89	-	13.2586	1.52e-05	0.00569	ACCCCTCCCCCCAGG
SP1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	7	17	+	13.6346	1.52e-05	0.00648	TTCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	27	37	-	13.6346	1.52e-05	0.00648	TTCCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	98	108	-	13.6346	1.52e-05	0.00648	TTCCCGCCTCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	+	13.4098	1.52e-05	0.0554	AGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	+	13.4098	1.52e-05	0.0554	AGCCGTGGGGGCG
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	-	12.7347	1.52e-05	0.597	ATTGCACAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	-	12.7347	1.52e-05	0.597	ATTGCACAAC
CEBPG	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	-	12.7347	1.52e-05	0.597	ATTGCACAAC
CEBPD	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	+	13.1538	1.52e-05	0.765	ATGGCGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	-	13.1538	1.52e-05	0.765	ATGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	-	13.1538	1.52e-05	0.765	ATGGCGCAAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	-	13.1538	1.52e-05	0.765	ATGGCGCAAT
CEBPG	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	+	12.7347	1.52e-05	0.597	ATTGCACAAC
CEBPG	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	+	12.7347	1.52e-05	0.597	ATTGCACAAC
PKNOX1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	-	7.55102	1.52e-05	0.793	TGACAGGTGCCC
PKNOX1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	+	7.55102	1.52e-05	0.793	TGACAGGTGCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	5	24	+	8.40367	1.52e-05	0.0421	CCCCCCCCCCCCCACAGTGT
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	42	+	13.5818	1.52e-05	0.18	CTTCCTGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	68	+	13.5818	1.52e-05	0.18	CTTCCTGGAAA
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	73	83	-	13.5818	1.52e-05	0.18	CTTCCTGGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	73	83	-	13.5818	1.52e-05	0.18	CTTCCTGGAAA
IRF2	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	30	47	+	9.81651	1.52e-05	0.474	GAAAAGTAAAAGTAATTT
CREB3L1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	38	51	+	12.1061	1.52e-05	0.253	AAGCCACGTATTCA
CREB3L1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	64	77	-	12.1061	1.52e-05	0.253	AAGCCACGTATTCA
Klf1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	97	107	-	13.5758	1.52e-05	0.0422	CACCACGCCCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	+	13.3276	1.52e-05	0.0537	GCCCCCCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	+	13.3276	1.52e-05	0.0537	GCCCCCCGGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	+	13.3276	1.52e-05	0.0537	TGCCCACAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	+	13.3276	1.52e-05	0.0537	TGCCCACAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	+	13.3276	1.52e-05	0.0537	TGCCCACAAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	+	13.3276	1.52e-05	0.0537	TGCCCACAAGGCA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	+	13.3276	1.52e-05	0.0537	GCCCCCCGGGGCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	-	13.3276	1.52e-05	0.0537	GCCCCCCGGGGCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	-	13.3276	1.52e-05	0.0537	GCCCCCCGGGGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	11	25	-	13.0182	1.52e-05	0.0974	ACCCCCCCGCGGCCT
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	33	44	-	14.1091	1.52e-05	1	AAGCATATGCCT
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	33	44	-	14.1091	1.52e-05	1	AAGCATATGCCT
RFX2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	+	10.2143	1.52e-05	0.109	AGTCCCCATGGTGACA
RFX2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	-	10.2143	1.52e-05	0.109	AGTCCCCATGGTGACA
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	26	37	+	8.76829	1.52e-05	0.631	TTTCCCACCGAC
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	26	37	+	8.76829	1.52e-05	0.631	TTTCCCACCGAC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	67	79	+	12.1034	1.52e-05	0.108	CAGGCGGAAGTGC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	+	13.459	1.52e-05	0.0626	TGCCTTTAAGGCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	10	20	-	13.0976	1.52e-05	0.0104	GCCACTCCCAT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	10	20	-	13.0976	1.52e-05	0.0104	GCCACTCCCAT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	10	20	-	13.0976	1.52e-05	0.0104	GCCACTCCCAT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	10	20	-	13.0976	1.52e-05	0.0104	GCCACTCCCAT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	53	73	-	12.371	1.52e-05	0.13	AATTATTTTCAATTTCATTCT
KLF5	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	13	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	3	12	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	10	19	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	20	29	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	12	21	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	32	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	32	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	32	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	32	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	32	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	29	38	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	29	38	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	27	36	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	46	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	46	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	46	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	46	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	31	40	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	52	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	52	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	38	47	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	38	47	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	38	47	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	38	47	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	62	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	69	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	69	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	69	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	69	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	77	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	78	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	64	73	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	64	73	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	84	+	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	69	78	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	70	79	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	70	79	-	13.9796	1.52e-05	0.00897	ACCCCACCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	88	+	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	102	111	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	102	111	-	13.9796	1.52e-05	0.00897	CCCCCACCCA
EGR1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	43	+	13.1346	1.52e-05	0.00969	GCCCCGCCTCCTGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	44	+	13.1346	1.52e-05	0.00969	GGCCCGCCCACTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	44	+	13.1346	1.52e-05	0.00969	GGCCCGCCCACTTC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	45	+	13.1346	1.52e-05	0.00969	GCCCCGCCTCCTGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	24	37	-	13.1346	1.52e-05	0.00969	GCACCGCCCACAGC
EGR1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	72	85	-	13.1346	1.52e-05	0.00969	GCCCCGCCTCCTGG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	14	-	13.3091	1.52e-05	0.0548	CCCCCTCGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	35	-	13.3091	1.52e-05	0.0548	TCCCCTGGGGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	21	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	21	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	23	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	23	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	23	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	23	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	28	39	-	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	28	39	-	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	66	77	-	13.1974	1.52e-05	0.0164	GCAACTCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	66	77	-	13.1974	1.52e-05	0.0164	GCAACTCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	70	81	-	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	70	81	-	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	95	+	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	73	84	-	13.1974	1.52e-05	0.0164	GCCCCGCCTCCC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	13.2931	1.52e-05	0.188	ATCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	13.2931	1.52e-05	0.188	ATCACGTGTC
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	98	111	+	9.69388	1.52e-05	0.365	TGGAAAGGCGCCAA
ETV4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
ETV4	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.9655	1.52e-05	0.0832	GCCGGAAGTT
Klf4	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	3	12	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	12	21	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	13	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	27	36	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	46	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	46	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	46	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	46	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	69	78	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	88	-	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	102	111	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	102	111	+	13.2143	1.52e-05	0.0113	TGGGTGGGGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	27	41	-	10.7241	1.53e-05	0.0287	CTCCGCCTCCGCGGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	27	41	-	10.7241	1.53e-05	0.0287	CTCCGCCTCCGCGGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	27	41	-	10.7241	1.53e-05	0.0287	CTCCGCCTCCGCGGG
MEF2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	15	29	-	13.322	1.53e-05	0.462	CAGACAGAAATAGCA
MEF2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	15	29	-	13.322	1.53e-05	0.462	CAGACAGAAATAGCA
MEF2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	15	29	-	13.322	1.53e-05	0.462	CAGACAGAAATAGCA
MEF2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	15	29	-	13.322	1.53e-05	0.462	CAGACAGAAATAGCA
SP1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	9	19	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	9	19	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	17	27	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	18	28	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	33	43	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	54	64	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	54	64	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	60	70	+	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	57	67	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	57	67	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	63	73	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	72	82	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	88	98	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	96	106	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	96	106	-	13.5962	1.53e-05	0.00648	CGCCCTCCCCC
SPI1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	31	-	8.21818	1.53e-05	0.127	CGGAAGCGGAAGTG
SPI1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	84	97	+	8.21818	1.53e-05	0.127	CGGAAGCGGAAGTG
Nr5a2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	5	19	-	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	42	56	+	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	42	56	+	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	42	56	+	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	42	56	+	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	59	73	-	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Nr5a2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	96	110	+	13.1897	1.53e-05	0.293	CCAGCCAAGGCCAGC
Hoxd9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	45	54	-	12.2778	1.53e-05	1	GTAATAAAAT
Hoxd9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	45	54	-	12.2778	1.53e-05	1	GTAATAAAAT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	6	16	-	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	6	16	-	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	21	31	-	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	22	32	-	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	38	48	-	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	5	15	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	5	15	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	5	15	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	5	15	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	5	15	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	67	77	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
E2F6	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	84	94	+	13.9483	1.53e-05	0.0335	GGGAGGGAGCG
YY1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	92	103	-	13.4038	1.53e-05	0.103	AAAAATGGCCAC
YY1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	12	23	+	13.4038	1.53e-05	0.103	AAAAATGGCCAC
Foxq1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	68	78	+	13.7449	1.53e-05	1	AGTTGTTTATT
Foxq1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	68	78	+	13.7449	1.53e-05	1	AGTTGTTTATT
Foxq1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	3	13	-	13.7449	1.53e-05	1	AGTTGTTTATT
Foxq1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	3	13	-	13.7449	1.53e-05	1	AGTTGTTTATT
Lhx3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	13	25	+	13.495	1.53e-05	1	AAATTAACTTTCC
Lhx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	13	25	+	13.495	1.53e-05	1	AAATTAACTTTCC
Lhx3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	13	25	+	13.495	1.53e-05	1	AAATTAACTTTCC
Lhx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	13	25	+	13.495	1.53e-05	1	AAATTAACTTTCC
Rxra	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	38	-	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	77	90	+	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	77	90	+	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	77	90	+	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	77	90	+	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	77	90	+	7.73171	1.53e-05	0.264	AGGGTCACAGGCCA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	2	16	+	12.803	1.53e-05	0.197	AAGGTTTCATTTCCG
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	2	16	+	12.803	1.53e-05	0.197	AAGGTTTCATTTCCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	12.6545	1.53e-05	0.0689	TCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	12.6545	1.53e-05	0.0689	TCCGGAAGTG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	12.6545	1.53e-05	0.0689	TCCGGAAGTG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	12.6545	1.53e-05	0.0689	TCCGGAAGTG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	12.6545	1.53e-05	0.0689	TCCGGAAGTG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	8	27	-	8.38532	1.53e-05	0.0421	CCCCCACCCCCACCAAGCAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	50	69	+	8.38532	1.53e-05	0.0421	CCCCACCCCTCTCCCCAACA
ZNF143	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	79	94	-	7.22414	1.53e-05	0.276	CTCCCACGAGCCACTG
ZIC3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	40	54	+	11.7286	1.53e-05	0.0969	CCCCCCCTCTTGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	61	75	-	11.7286	1.53e-05	0.0969	CCCCCCCTCTTGCGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	+	14.0851	1.53e-05	0.169	GGTGACTCACG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	+	14.0851	1.53e-05	0.169	GGTGACTCACG
FOS	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	-	14.0851	1.53e-05	0.169	GGTGACTCACG
BHLHE22	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	14.2424	1.53e-05	1	AGCATATGTT
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	14.2424	1.53e-05	1	AGCATATGTT
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	14.2424	1.53e-05	1	AGCATATGTT
OLIG3	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	13.3103	1.53e-05	1	AACATATGCC
OLIG3	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	13.3103	1.53e-05	1	AACATATGCC
NFYB	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	50	64	-	13.5769	1.53e-05	0.0906	ACGGCGGCCAATGGG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	13.5532	1.53e-05	0.0823	GCCGGAAATG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	13.5532	1.53e-05	0.0823	GCCGGAAATG
FLI1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	13.5532	1.53e-05	0.0823	GCCGGAAATG
FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	13.5532	1.53e-05	0.0823	GCCGGAAATG
FLI1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	13.5532	1.53e-05	0.0823	GCCGGAAATG
ERG	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.4727	1.53e-05	0.0818	ACCGGAAGCT
ERG	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.4727	1.53e-05	0.0818	ACCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.4727	1.53e-05	0.0818	ACCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.4727	1.53e-05	0.0818	ACCGGAAGCT
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.4727	1.53e-05	0.0818	ACCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.4727	1.53e-05	0.0818	ACCGGAAGCT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	17	34	-	-6.55263	1.53e-05	0.0271	GGGGAGGAGGGAGGGAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	81	98	+	-6.55263	1.53e-05	0.0271	GGGGAGGAGGGAGGGAGG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	28	38	-	13.0909	1.53e-05	0.00887	CCGCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	28	38	-	13.0909	1.53e-05	0.00887	CCGCCCGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	51	61	-	13.0909	1.53e-05	0.00887	CCGCCCGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	77	87	+	13.0909	1.53e-05	0.00887	CCGCCCGCGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	-	13.7091	1.53e-05	0.063	AGCCCGAGGCC
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	28	-	8.66667	1.53e-05	0.379	CGCCCCCCGCGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	8	28	-	12.4082	1.53e-05	0.00833	GAGGGAGGGAGGGTGGGGACT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	82	102	-	12.4082	1.53e-05	0.00833	GGGGGTAGAGAAAGGGGGGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	50	70	+	12.4082	1.53e-05	0.00833	AGAAGAAAGGGAGGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	56	76	+	12.4082	1.53e-05	0.00833	GAGTGCGGAGGGGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	56	76	+	12.4082	1.53e-05	0.00833	GAGTGCGGAGGGGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	63	83	+	12.4082	1.53e-05	0.00833	GAGTGAGAAGAGGTGGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	87	107	+	12.4082	1.53e-05	0.00833	GAGGGAGGGAGGGTGGGGACT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	26	40	+	13.2414	1.53e-05	0.00573	GGCCCGCCCTGCTCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	26	40	+	13.2414	1.53e-05	0.00573	GGCCCGCCCTGCTCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	26	40	+	13.2414	1.53e-05	0.00573	GGCCCGCCCTGCTCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	26	40	+	13.2414	1.53e-05	0.00573	GGCCCGCCCTGCTCG
SP2	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	54	+	13.2414	1.53e-05	0.00573	CTCCCACCCCCGCTG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	69	83	+	13.2414	1.53e-05	0.00573	GCCCCTCCTTCCTGG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	99	+	13.2414	1.53e-05	0.00573	CCCCCACCCTCTCGG
SP2	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	61	75	-	13.2414	1.53e-05	0.00573	CTCCCACCCCCGCTG
T	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	32	47	+	11.5577	1.53e-05	1	TGACATTTAGATGTCA
T	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	32	47	-	11.5577	1.53e-05	1	TGACATCTAAATGTCA
T	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	68	83	+	11.5577	1.53e-05	1	TGACATCTAAATGTCA
T	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	68	83	+	11.5577	1.53e-05	1	TGACATCTAAATGTCA
T	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	68	83	-	11.5577	1.53e-05	1	TGACATTTAGATGTCA
T	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	68	83	-	11.5577	1.53e-05	1	TGACATTTAGATGTCA
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	25	34	-	13.8545	1.53e-05	0.653	ATCAGCTGTC
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	93	106	-	8.2	1.53e-05	0.127	GAAATGGAGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	93	106	-	8.2	1.53e-05	0.127	GAAATGGAGAAGTG
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	16	24	-	11.1447	1.53e-05	0.192	CTGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	16	24	-	11.1447	1.53e-05	0.192	CTGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	68	76	+	11.1447	1.53e-05	0.192	CTGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	78	86	+	11.1447	1.53e-05	0.192	CTGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	78	86	+	11.1447	1.53e-05	0.192	CTGCCCACA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	73	81	-	11.1447	1.53e-05	0.192	CTGCCCACA
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	37	57	-	12.3548	1.53e-05	0.13	CAAAAGTTTTAGTTTTTTTTT
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	57	66	-	12.809	1.53e-05	0.93	GGTCTGGCAG
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	95	104	-	12.809	1.53e-05	0.93	TGTCTGGAAT
ELK4	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	13	23	-	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	33	43	+	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	33	43	+	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	40	50	-	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	65	75	+	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	92	102	+	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	92	102	+	13.7273	1.53e-05	0.0378	GCGCTTCCGCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	35	49	-	10.7069	1.54e-05	0.0287	CCCCGCCCAGGCGTG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	35	49	-	10.7069	1.54e-05	0.0287	CCCCGCCCAGGCGTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	35	49	-	10.7069	1.54e-05	0.0287	CCCCGCCCAGGCGTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	35	49	-	10.7069	1.54e-05	0.0287	CCCCGCCCAGGCGTG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	57	69	-	7.69388	1.54e-05	0.233	GGGGAAAGCCCCT
E2F4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	50	60	+	14.0345	1.54e-05	0.0388	TCGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	53	63	+	14.0345	1.54e-05	0.0388	TCGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	53	63	+	14.0345	1.54e-05	0.0388	TCGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	55	65	-	14.0345	1.54e-05	0.0388	TCGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	55	65	-	14.0345	1.54e-05	0.0388	TCGCGGGAGGG
Rarb	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	3	18	-	2.05172	1.54e-05	0.742	GAGGATCACAAGGTCA
Rarb	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	98	113	+	2.05172	1.54e-05	0.742	GAGGATCACAAGGTCA
Rarb	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	98	113	+	2.05172	1.54e-05	0.742	GAGGATCACAAGGTCA
Rarb	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	98	113	+	2.05172	1.54e-05	0.742	GAGGATCACAAGGTCA
Rarb	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	98	113	+	2.05172	1.54e-05	0.742	GAGGATCACAAGGTCA
Pou5f1::Sox2	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	39	53	+	12.9435	1.54e-05	1	CTTTGTAATTCAAGT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	58	72	-	11.9672	1.54e-05	0.0327	TACGACGCCCACCTC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	58	72	-	11.9672	1.54e-05	0.0327	TACGACGCCCACCTC
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	23	33	-	13.7347	1.54e-05	0.17	GTGCCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	23	33	-	13.7347	1.54e-05	0.17	GTGCCGGGAAG
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	-	12.84	1.54e-05	0.744	ATTGCACAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	-	12.84	1.54e-05	0.744	ATTGCACAAC
CEBPB	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	-	12.84	1.54e-05	0.744	ATTGCACAAC
CEBPB	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	+	12.84	1.54e-05	0.744	ATTGCACAAC
CEBPB	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	+	12.84	1.54e-05	0.744	ATTGCACAAC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	1	14	-	13.5909	1.54e-05	0.0276	CTCCGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	1	14	-	13.5909	1.54e-05	0.0276	CTCCGCCAGGCCTG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	-	12.4286	1.54e-05	0.184	GATGAGTCACT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	79	94	+	12.8727	1.54e-05	0.0353	CCCCGCCCCCCCGCGA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	21	+	8.36697	1.54e-05	0.0422	TCCCCCCCCCCCCCCCACCG
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	43	57	-	13	1.54e-05	0.0974	GCCCACCCGCCGTCA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	43	57	-	13	1.54e-05	0.0974	GCCCACCCGCCGTCA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	66	80	+	13	1.54e-05	0.0974	GCCCACCCGCCGTCA
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	66	80	+	13	1.54e-05	0.0974	GCCCACCCGCCGTCA
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	22	-	13.1034	1.54e-05	0.859	CCCACCTGTT
FIGLA	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	58	-	13.1034	1.54e-05	0.859	CCCACCTGTT
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	44	58	+	12.7879	1.54e-05	0.197	TTACTTTTTTTTCCC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	9	23	-	12.7879	1.54e-05	0.197	TTACTTTCACTTTTG
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	8	22	-	11.3421	1.54e-05	0.143	GGGCTGAGGCAGCGC
Bach1::Mafk	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	93	107	+	11.3421	1.54e-05	0.143	GGGCTGAGGCAGCGC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	4	17	+	11.8361	1.54e-05	0.176	CGCCCCCCACCATG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	57	70	-	11.8361	1.54e-05	0.176	CGCCCCCCACCATG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	18	31	+	13.8269	1.54e-05	0.143	CAGGGCTGACTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	41	54	-	13.8269	1.54e-05	0.143	CAGGGCTGACTCAT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	-	13.3103	1.54e-05	0.0537	TGCCTTGTGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	-	13.3103	1.54e-05	0.0537	TGCCTTGTGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	-	13.3103	1.54e-05	0.0537	TGCCTTGTGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	-	13.3103	1.54e-05	0.0537	TGCCTTGTGGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	-	13.4426	1.54e-05	0.0626	TGCCCAGAGGGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	10	23	+	13.1154	1.54e-05	0.00977	CGCCCGCCGACACC
EGR1	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	12	25	-	13.1154	1.54e-05	0.00977	CTCACTCCCCCACA
EGR1	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	90	103	+	13.1154	1.54e-05	0.00977	CTCACTCCCCCACA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	92	105	-	13.1154	1.54e-05	0.00977	CTACCGCCGCCGCA
EGR1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	92	105	-	13.1154	1.54e-05	0.00977	CGCCCGCCGACACC
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	62	72	-	13.5	1.54e-05	0.0649	CGCCTGCGGCT
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	32	-	12.5429	1.54e-05	0.0871	AGAGATCAAAGTTCG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	32	-	12.5429	1.54e-05	0.0871	AGAGATCAAAGTTCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	37	51	+	12.5429	1.54e-05	0.0871	GGAGGGGAAAGGTAA
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	37	51	+	12.5429	1.54e-05	0.0871	GGAGGGGAAAGGTAA
NR2C2	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	64	78	-	12.5429	1.54e-05	0.0871	GGAGGGGAAAGGTAA
Hoxb5	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	69	84	-	13.1429	1.54e-05	1	ACCTTAATTACCCGAA
USF1	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	36	46	-	13.5714	1.54e-05	0.0897	ATCATGTGACT
USF1	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	78	+	13.5714	1.54e-05	0.0897	ATCATGTGACT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	27	40	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	49	62	-	12.3621	1.54e-05	0.0197	GACTCCGCCCCCAC
ELK3	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ELK3	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.3103	1.54e-05	0.0621	ACCGGAAGCC
ATF7	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	41	54	-	11.5714	1.54e-05	0.0967	TGATGACGTCAAAC
ATF7	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	61	74	+	11.5714	1.54e-05	0.0967	TGATGACGTCAAAC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	72	86	+	3.58182	1.54e-05	0.42	ATCGATACAGAAAGC
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	34	+	13.9796	1.54e-05	0.101	GACAGCTGGCA
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	34	+	13.9796	1.54e-05	0.101	GACAGCTGGCA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	9	20	+	13.1842	1.54e-05	0.0165	CCCCCCCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	12	23	-	13.1842	1.54e-05	0.0165	TCCACCCCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	12	23	-	13.1842	1.54e-05	0.0165	TCCACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	12	23	-	13.1842	1.54e-05	0.0165	TCCACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	25	36	-	13.1842	1.54e-05	0.0165	CCCCCCCCCACC
IRF1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	40	60	-	12.3387	1.55e-05	0.13	TCCTGCTTCCGCTTCCTGTTC
NFATC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	41	50	+	11.9596	1.55e-05	0.908	ATTTTCCGCT
NFATC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	80	89	+	11.9596	1.55e-05	0.908	ATTTTCCGCT
Sox3	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	43	52	-	13.5172	1.55e-05	0.659	CCTTTGTGCT
Sox3	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	43	52	-	13.5172	1.55e-05	0.659	CCTTTGTGCT
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	92	105	-	8.18182	1.55e-05	0.127	AGTATGGGGAAGTA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	92	105	-	8.18182	1.55e-05	0.127	AGTATGGGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	92	105	-	8.18182	1.55e-05	0.127	AGTATGGGGAAGTA
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	92	105	-	8.18182	1.55e-05	0.127	AGTATGGGGAAGTA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	92	105	-	8.18182	1.55e-05	0.127	AGTATGGGGAAGTA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	43	61	+	13.0161	1.55e-05	0.137	GAACCCAGCGGCGCGGGGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	41	+	13.2241	1.55e-05	0.00577	GCCCCACCCTCACAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	41	+	13.2241	1.55e-05	0.00577	GCCCCACCCTCACAC
SP2	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	60	74	+	13.2241	1.55e-05	0.00577	CGCCCTCCCCCTAGC
SP2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	64	78	-	13.2241	1.55e-05	0.00577	CTCCCGCCCCCAAAG
SP2	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	74	88	-	13.2241	1.55e-05	0.00577	GCCCCACCCTCACAC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.5	1.55e-05	0.0872	ACCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.5	1.55e-05	0.0872	ACCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.5	1.55e-05	0.0872	ACCGGAAGCT
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.5	1.55e-05	0.0872	ACCGGAAGCT
FEV	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.5	1.55e-05	0.0872	ACCGGAAGCT
FEV	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.5	1.55e-05	0.0872	ACCGGAAGCT
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	29	-	11.449	1.55e-05	0.0827	GGTGACGTCAGG
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	97	+	11.449	1.55e-05	0.0827	GGTGACGTCAGG
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	80	91	+	13.4098	1.55e-05	0.358	AGTGGCGCCTAA
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	80	91	+	13.4098	1.55e-05	0.358	AGTGGCGCCTAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	80	91	+	13.4098	1.55e-05	0.358	AGTGGCGCCTAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	80	91	+	13.4098	1.55e-05	0.358	AGTGGCGCCTAA
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	13.6935	1.55e-05	1	AACATATGCT
Atoh1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	13.6935	1.55e-05	1	AACATATGCT
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	13.6935	1.55e-05	1	AACATATGCT
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	8.7931	1.55e-05	0.213	TGACAAGTGCCA
HES5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	8.7931	1.55e-05	0.213	TGACAAGTGCCA
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	13	26	-	10.5319	1.55e-05	0.0959	TGCCACCTGCTGGT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	-	14.2	1.55e-05	0.129	TGTGACTCAGA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	-	14.2	1.55e-05	0.129	TGTGACTCAGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	+	14.2	1.55e-05	0.129	TGTGACTCAGA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	+	14.2	1.55e-05	0.129	TGTGACTCAGA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	-	14.2	1.55e-05	0.129	TGTGACTCAGA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	+	14.2	1.55e-05	0.129	TGTGACTCAGA
Myod1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	79	+	13.9388	1.55e-05	0.12	AGCAGCTGTTTTG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	86	98	+	13.9388	1.55e-05	0.12	ACCAGCTGCCCTG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	86	98	+	13.9388	1.55e-05	0.12	ACCAGCTGCCCTG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	63	75	-	13.9388	1.55e-05	0.12	GGCAGCTGTTGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	36	56	-	12.3878	1.55e-05	0.0084	GAAGAAGGAGACGAAGGGACA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	36	56	-	12.3878	1.55e-05	0.0084	GAAGAAGGAGACGAAGGGACA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	7	27	+	12.3878	1.55e-05	0.0084	GAGAGACGGGGGGAGAGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	7	27	+	12.3878	1.55e-05	0.0084	GAGAGACGGGGGGAGAGAGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	43	63	+	12.3878	1.55e-05	0.0084	GGGAGAAGGAGGAGAAAGAGG
IRF2	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	73	90	+	9.76147	1.55e-05	0.474	GGAAATTGAAACTGAGTG
Npas2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	+	13.6721	1.55e-05	0.333	TGCACGTGTG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	-	13.6721	1.55e-05	0.333	TGCACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	-	13.6721	1.55e-05	0.333	TGCACGTGTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	60	70	+	13.5769	1.55e-05	0.00659	TTCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	60	70	+	13.5769	1.55e-05	0.00659	TTCCCACCCCC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	28	38	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	28	38	+	13.6393	1.55e-05	0.0353	CCGGAAGTCAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	49	59	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	49	59	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	56	66	-	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	77	87	-	13.6393	1.55e-05	0.0353	CCGGAAGTCAT
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	77	87	-	13.6393	1.55e-05	0.0353	CCGGAAGTCAT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	77	87	-	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	77	87	-	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	92	102	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	92	102	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	92	102	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	92	102	+	13.6393	1.55e-05	0.0353	CCGGAAGCGTC
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	13	30	-	12.4878	1.55e-05	0.0727	TGATTTCTCATTGGCTTA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	13	30	-	12.4878	1.55e-05	0.0727	TGATTTCTCATTGGCTTA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	15	29	+	13.6596	1.55e-05	0.311	GGCGATGACCTCATC
EGR4	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	37	52	-	12.8545	1.55e-05	0.0355	ACCCGCCCGCGCCCCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	+	13.2545	1.55e-05	0.0893	CGCCCTCGGGGA
TFAP2B	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	+	13.2545	1.55e-05	0.0893	GGCCCCGGGGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	-	13.2545	1.55e-05	0.0893	GGCCCCGGGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	-	13.2545	1.55e-05	0.0893	GGCCCCGGGGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	26	36	+	13.0727	1.55e-05	0.00896	ACGCAGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	26	36	+	13.0727	1.55e-05	0.00896	ACGCAGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	16	26	-	13.0727	1.55e-05	0.00896	ACGGCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	87	97	-	13.0727	1.55e-05	0.00896	ACGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	87	97	-	13.0727	1.55e-05	0.00896	ACGCAGGCGCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	81	+	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	81	+	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	83	+	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	29	39	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	32	42	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	32	42	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	32	42	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	34	44	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	34	44	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	34	44	-	13.2586	1.55e-05	0.0112	GCACCGCCCCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	25	39	-	12.9818	1.55e-05	0.0974	GCCGCCCCGCGGAGG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	59	73	-	12.9818	1.55e-05	0.0974	TGCCCCCCACTGACT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	13.5	1.55e-05	0.105	GCCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	13.5	1.55e-05	0.105	GCCACGTGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	51	65	+	10.6724	1.56e-05	0.0287	CCCCGCCGCCGCGCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	50	64	-	10.6724	1.56e-05	0.0287	CCCCGCCGCCGCGCC
Nr5a2	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	89	103	-	13.1552	1.56e-05	0.293	TCGGCCAAGGCCACG
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	-	11.3945	1.56e-05	0.613	TGAAAGCTGCCA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	100	+	13.211	1.56e-05	0.034	GCCCCCCCAG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	8	22	-	11.6857	1.56e-05	0.0969	CGCCACCTCCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	23	37	+	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	23	37	+	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	23	37	+	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	34	48	-	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	34	48	-	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	34	48	-	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
ZIC3	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	78	92	-	11.6857	1.56e-05	0.0969	CCCCCCCCGCTGTCG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	40	57	+	-6.63158	1.56e-05	0.0275	GGGGAGGAGGGGGGAAGG
RORA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	49	62	+	11.5618	1.56e-05	0.831	TATCAATAGGTCAG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	19	38	+	8.33028	1.56e-05	0.0424	CGCCACCCCAGCCCCCGCCC
STAT3	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	5	15	-	13.7143	1.56e-05	0.17	GTTCCTGGAAG
STAT3	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	30	40	-	13.7143	1.56e-05	0.17	GTTCCTGGAAG
STAT3	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	85	+	13.7143	1.56e-05	0.17	GTTCCTGGAAG
STAT3	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	110	+	13.7143	1.56e-05	0.17	GTTCCTGGAAG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	77	86	+	13.3617	1.56e-05	0.0473	ACCGGATGTG
TBX21	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	25	34	+	13.2727	1.56e-05	1	GAGGTGTGAC
TBX21	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	81	90	-	13.2727	1.56e-05	1	GAGGTGTGAC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	+	13.2931	1.56e-05	0.0537	CGCCCGGAGGGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	47	60	+	13.0962	1.56e-05	0.00987	CGCCCTCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	47	60	+	13.0962	1.56e-05	0.00987	CGCCCTCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	63	76	+	13.0962	1.56e-05	0.00987	CCCCCGCCGCTGCC
RELA	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	40	49	+	13.9694	1.56e-05	0.18	GGGGAATTCC
RELA	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	66	75	-	13.9694	1.56e-05	0.18	GGGGAATTCC
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	2	16	+	13.1212	1.56e-05	0.062	GGCTCGCGAGCGCCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	58	72	+	11.9344	1.56e-05	0.033	GGCCACGCGCTGAGC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	58	72	+	11.9344	1.56e-05	0.033	GGCCACGCGCTGAGC
SP3	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	5	15	+	13.0894	1.56e-05	0.0106	GCCACGCCTCT
SP3	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	50	60	+	13.0894	1.56e-05	0.0106	CACCCGCCCAC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	65	75	+	13.0894	1.56e-05	0.0106	CACCCGCCCAC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	81	91	+	13.0894	1.56e-05	0.0106	CACCCGCCCAC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	24	34	-	13.0894	1.56e-05	0.0106	CACCCGCCCAC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	40	50	-	13.0894	1.56e-05	0.0106	CACCCGCCCAC
SP3	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	100	110	-	13.0894	1.56e-05	0.0106	GCCACGCCTCT
CTCF	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	24	42	+	11.9016	1.56e-05	0.0813	GGGCCAGGGGATGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	73	91	-	11.9016	1.56e-05	0.0813	GGGCCAGGGGATGGCGGGG
HES7	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	54	65	+	8.37931	1.56e-05	0.189	CGCCACGTGCTG
HES7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	61	-	8.37931	1.56e-05	0.189	CGCCACGTGCTG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	61	-	8.37931	1.56e-05	0.189	CGCCACGTGCTG
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	28	40	+	12.3016	1.56e-05	0.377	CGGCGGCACGTGG
Hes2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	28	40	+	12.3016	1.56e-05	0.377	CGGCGGCACGTGG
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	28	40	+	12.3016	1.56e-05	0.377	CGGCGGCACGTGG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	29	42	+	13.8077	1.56e-05	0.143	AGCATGTGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	30	43	-	13.8077	1.56e-05	0.143	AGCATGTGACTCAC
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	96	109	+	10.5106	1.56e-05	0.0959	GGCAGCCCGCTGAG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	96	109	+	10.5106	1.56e-05	0.0959	GGCAGCCCGCTGAG
RORA	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	10	19	-	13.7753	1.56e-05	0.864	AAAAAGGTCA
RORA	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	27	36	-	13.7753	1.56e-05	0.864	AAAAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	31	40	+	13.7753	1.56e-05	0.864	AAAAAGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	31	40	+	13.7753	1.56e-05	0.864	AAAAAGGTCA
RORA	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	79	88	+	13.7753	1.56e-05	0.864	AAAAAGGTCA
GLIS2	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	35	48	+	11.8033	1.56e-05	0.176	CAGCCCCCGCGATG
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	25	36	-	13.431	1.56e-05	0.365	GCAACCCCCAAC
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	6	21	+	1.98276	1.56e-05	0.742	CAGGGGTGAGAGGTCA
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	6	21	+	1.98276	1.56e-05	0.742	CAGGGGTGAGAGGTCA
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	8	26	-	13	1.56e-05	0.137	GGGCGCGGCGGGGCGGGAT
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	8	26	-	13	1.56e-05	0.137	GGGCGCGGCGGGGCGGGAT
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	8	26	-	13	1.56e-05	0.137	GGGCGCGGCGGGGCGGGAT
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	8	26	-	13	1.56e-05	0.137	GGGCGCGGCGGGGCGGGAT
JUNB	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	12	-	14.2245	1.56e-05	0.13	AGATGACTCAC
JUNB	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	28	38	-	14.2245	1.56e-05	0.13	GTATGACTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	32	42	-	14.2245	1.56e-05	0.13	GAATGACTCAC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	1	10	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	1	10	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	1	10	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	1	10	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	3	12	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	4	13	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	23	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	6	15	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	6	15	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	24	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	6	15	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	6	15	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	17	26	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	17	26	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	26	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	28	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	14	23	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	14	23	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	15	24	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	41	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	41	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	41	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	34	43	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	34	43	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	43	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	43	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	26	35	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	26	35	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	28	37	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	29	38	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	29	38	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	29	38	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	33	42	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	33	42	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	33	42	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	33	42	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	51	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	51	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	51	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	38	47	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	61	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	63	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	63	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	47	56	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	48	57	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	67	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	68	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	54	63	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	59	68	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	60	69	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	60	69	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	60	69	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	60	69	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	63	72	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	63	72	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	63	72	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	63	72	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	64	73	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	72	81	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	75	84	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	75	84	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	75	84	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	75	84	-	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	100	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	92	101	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	102	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	102	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	103	112	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	105	114	+	13.9184	1.56e-05	0.00897	GTCCCGCCCC
ERF	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
ERF	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	13.5286	1.56e-05	0.0727	ACCGGAAGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	65	-	13.2727	1.56e-05	0.0548	TCCCCGCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	65	-	13.2727	1.56e-05	0.0548	TCCCCGCAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	65	-	13.2727	1.56e-05	0.0548	TCCCCGCAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	80	-	13.2727	1.56e-05	0.0548	TCCCCGCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	80	-	13.2727	1.56e-05	0.0548	TCCCCGCAGGCT
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	-	13.4098	1.56e-05	0.0626	TCCCCGCCGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	+	13.4098	1.56e-05	0.0626	TCCCCGCCGGGCG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	52	63	-	13.1148	1.56e-05	0.0919	GACCCGGAACTA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	52	63	-	13.1148	1.56e-05	0.0919	GACCCGGAACTA
Zfx	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	29	42	-	13.5606	1.56e-05	0.028	GGAGGCGTGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	73	86	+	13.5606	1.56e-05	0.028	GGAGGCGTGGCCTG
KLF16	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	27	37	+	13.2414	1.57e-05	0.0113	CACCCTCCCCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	7	20	-	12.0455	1.57e-05	0.253	GCGCCACGTGGCCG
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	7	20	-	12.0455	1.57e-05	0.253	GCGCCACGTGGCCG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	95	108	+	12.0455	1.57e-05	0.253	GCGCCACGTGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	25	39	-	12.5143	1.57e-05	0.0871	CGGGGTCAGGGTGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	25	39	-	12.5143	1.57e-05	0.0871	CGGGGTCAGGGTGGG
HINFP	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	11	22	-	13.4697	1.57e-05	0.109	GGGCGTCCGCTA
Klf4	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	4	13	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	11	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	11	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	11	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	4	13	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	14	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	14	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	21	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	21	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	25	34	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	25	34	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	26	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	26	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	18	27	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	18	27	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	18	27	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	27	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	27	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	29	38	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	29	38	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	29	38	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	30	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	34	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	34	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	30	39	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	39	48	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	42	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	42	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	42	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	42	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	42	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	43	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	43	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	43	52	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	44	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	44	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	48	57	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	50	59	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	51	60	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	53	62	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	53	62	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	53	62	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	53	62	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	55	64	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	56	65	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	56	65	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	56	65	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	56	65	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	59	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	59	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	59	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	59	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	59	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	55	64	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	55	64	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	65	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	65	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	65	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	72	81	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	73	82	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	74	83	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	74	83	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	74	83	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	67	76	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	89	98	+	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	82	91	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	111	-	13.102	1.57e-05	0.0113	GGGGAGGGGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	+	14.0638	1.57e-05	0.169	TGTGACTCACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	-	14.0638	1.57e-05	0.169	TGTGACTCACC
FOS	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	-	14.0638	1.57e-05	0.169	GCTGACTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	-	14.0638	1.57e-05	0.169	GCTGACTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	-	14.0638	1.57e-05	0.169	GCTGACTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	-	14.0638	1.57e-05	0.169	GCTGACTCACC
EGR3	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	11	25	-	10.6552	1.57e-05	0.0287	CCACGCCCCCTCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	40	54	-	10.6552	1.57e-05	0.0287	CCACGCCCCCTCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	61	75	+	10.6552	1.57e-05	0.0287	CCACGCCCCCTCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	67	81	+	10.6552	1.57e-05	0.0287	CAACCCCCCCGCCAT
EGR3	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	90	104	+	10.6552	1.57e-05	0.0287	CCACGCCCCCTCCCC
MEF2C	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	75	89	+	13.2881	1.57e-05	0.462	AAGCTAGAAATAACT
IRF9	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	71	85	+	3.52727	1.57e-05	0.42	GAGGAAATTGAAACT
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.1	17	30	-	12.8	1.57e-05	0.203	ATTCGACGTCATTG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.1.0	17	30	-	12.8	1.57e-05	0.203	ATTCGACGTCATTG
ZBED1	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	58	70	-	10.4727	1.57e-05	1	GGGTCGCGACAGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	10	27	+	-6.67105	1.57e-05	0.0275	GGGGAGGAGGAGGGAGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	35	52	+	-6.67105	1.57e-05	0.0275	GAGAGTGAGGTAGGAAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	63	80	-	-6.67105	1.57e-05	0.0275	GAGAGTGAGGTAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	63	80	-	-6.67105	1.57e-05	0.0275	GAGAGTGAGGTAGGAAGT
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	12	22	+	13.8163	1.57e-05	0.219	GGTTCCCGGAA
Stat5a::Stat5b	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	16	26	-	13.8163	1.57e-05	0.219	GGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	89	99	+	13.8163	1.57e-05	0.219	GGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	93	103	-	13.8163	1.57e-05	0.219	GGTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	93	103	-	13.8163	1.57e-05	0.219	GGTTCCCGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	43	-	12.3673	1.57e-05	0.00848	GGGGGGCGGGGGGGGGGGGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	73	93	-	12.3673	1.57e-05	0.00848	TGTGCAGGAGGAGCGGAGGGC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	75	95	-	12.3673	1.57e-05	0.00848	GGAGCAGCTTGGAGAGGAAGT
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	20	40	+	12.3673	1.57e-05	0.00848	GGAGCAGCTTGGAGAGGAAGT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	51	64	-	12.3276	1.57e-05	0.0199	GGCTCCGCCCCCAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	51	64	-	12.3276	1.57e-05	0.0199	GGCTCCGCCCCCAG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	49	59	+	13.4754	1.57e-05	0.122	AAACGGAAATA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	49	59	+	13.4754	1.57e-05	0.122	AAACGGAAATA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	22	-	13.4754	1.57e-05	0.122	AAACGGAAATA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	22	-	13.4754	1.57e-05	0.122	AAACGGAAATA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	-	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	+	13.3818	1.57e-05	0.0397	CGCCCGCGGCG
BATF3	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	17	30	-	6.4697	1.57e-05	0.115	GGATGAGGTCATCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	64	77	-	6.4697	1.57e-05	0.115	CGCTGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	64	77	-	6.4697	1.57e-05	0.115	CGCTGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	64	77	-	6.4697	1.57e-05	0.115	CGCTGACGTCTCCG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	64	77	-	6.4697	1.57e-05	0.115	CGCTGACGTCTCCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	+	13.2759	1.57e-05	0.0537	GGCCTTCGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	+	13.2759	1.57e-05	0.0537	GGCCTTCGGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	+	13.2759	1.57e-05	0.0537	CGCCCGCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	+	13.2759	1.57e-05	0.0537	CGCCCGCAGGGGG
Rarb	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	93	108	+	1.96552	1.57e-05	0.742	GAAGGTGGAGAGGTCG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	9	24	-	12.8364	1.57e-05	0.0355	TACCCCCCACCCATCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	46	61	+	12.8364	1.57e-05	0.0355	GCTCGCCCACGCAGCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	46	61	+	12.8364	1.57e-05	0.0355	GCTCGCCCACGCAGCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	13	27	-	11.918	1.57e-05	0.033	GGCCCCGCCCCAGCA
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	13	27	-	11.918	1.57e-05	0.033	GGCCCCGCCCCAGCA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	13	27	-	11.918	1.57e-05	0.033	GGCCCCGCCCCAGCA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	9	28	-	8.30275	1.57e-05	0.0424	CCGCCGCCCACCCCAAACCA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	85	104	+	8.30275	1.57e-05	0.0424	CCGCCGCCCACCCCAAACCA
Pou2f3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	4	19	+	13.4146	1.57e-05	0.645	GCGTATTCAAATGAGT
Pou2f3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	4	19	+	13.4146	1.57e-05	0.645	GCGTATTCAAATGAGT
NHLH1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	-	13.5	1.57e-05	0.096	CGCAGCTGTC
NHLH1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	+	13.5	1.57e-05	0.096	CGCAGCTGTC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	+	13.5	1.57e-05	0.096	CGCAGCTGTC
ETV1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13.1273	1.57e-05	0.0746	ACCGGATGTC
ETV1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13.1273	1.57e-05	0.0746	ACCGGATGTC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	-	13.2364	1.57e-05	0.0893	CGCCCGAGGGGA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	-	13.2364	1.57e-05	0.0893	CGCCCGAGGGGA
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	43	56	-	10.4894	1.57e-05	0.0959	GGCCTCCCGCAGTT
RXRG	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	7	20	+	7.04255	1.57e-05	0.347	GCGGTGAAAGGTTA
RXRG	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	95	108	-	7.04255	1.57e-05	0.347	GCGGTGAAAGGTTA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	31	45	+	13.1061	1.57e-05	0.062	GTGTCGCGAGGTTTG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	13	27	+	11.6571	1.57e-05	0.0969	AGCCCCCTGGCGCGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	33	47	+	11.6571	1.57e-05	0.0969	AGCCCCCTGGCGCGC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	68	82	-	11.6571	1.57e-05	0.0969	AGCCCCCTGGCGCGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	88	102	-	11.6571	1.57e-05	0.0969	AGCCCCCTGGCGCGC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	20	30	-	13.0813	1.57e-05	0.0107	CCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	20	30	-	13.0813	1.57e-05	0.0107	CCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	20	30	-	13.0813	1.57e-05	0.0107	CCCACACCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	20	30	-	13.0813	1.57e-05	0.0107	CCCACACCTCC
MLX	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	13.4286	1.57e-05	0.188	GTCACGTGGC
MLX	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	13.4286	1.57e-05	0.188	GTCACGTGGC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	90	99	-	13.9634	1.57e-05	0.472	CTCACCCCAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	90	99	-	13.9634	1.57e-05	0.472	CTCACCCCAG
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	90	99	-	13.9634	1.57e-05	0.472	CTCACCCCAG
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	90	99	-	13.9634	1.57e-05	0.472	CTCACCCCAG
SREBF1	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	16	25	+	13.9634	1.57e-05	0.472	CTCACCCCAG
RXRB	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	95	108	-	6.07273	1.57e-05	0.387	GCGGTGAAAGGTTA
RXRB	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	7	20	+	6.07273	1.57e-05	0.387	GCGGTGAAAGGTTA
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	13.0986	1.58e-05	0.0736	ACCGGATATG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	13.0986	1.58e-05	0.0736	ACCGGATATG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	-	13.3934	1.58e-05	0.0626	CCCCCTGCGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	-	13.3934	1.58e-05	0.0626	CCCCCTGCGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	-	13.3934	1.58e-05	0.0626	AGCCCTGCCGGCA
RFX5	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	-	10.4138	1.58e-05	0.119	CGTCGCCATGGCGCCA
RFX5	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	+	10.4138	1.58e-05	0.119	CGTCGCCATGGCGCCA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	20	30	-	13.4615	1.58e-05	0.0649	CGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	85	95	+	13.4615	1.58e-05	0.0649	CGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	85	95	+	13.4615	1.58e-05	0.0649	CGCCTCCGGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	7	21	+	13.1897	1.58e-05	0.00585	GCACCTCCCCCGCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	7	21	+	13.1897	1.58e-05	0.00585	GCACCTCCCCCGCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	7	21	+	13.1897	1.58e-05	0.00585	GCACCTCCCCCGCGC
SP2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	82	+	13.1897	1.58e-05	0.00585	TCCCCGCCCCGCATC
SP2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	111	+	13.1897	1.58e-05	0.00585	TCCCCGCCCCGCATC
SP2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	4	18	-	13.1897	1.58e-05	0.00585	TCCCCGCCCCGCATC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	22	36	-	13.1897	1.58e-05	0.00585	GGCCCGCTCCCTGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	22	36	-	13.1897	1.58e-05	0.00585	GGCCCGCTCCCTGCG
SP2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	33	47	-	13.1897	1.58e-05	0.00585	TCCCCGCCCCGCATC
SP2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	100	114	-	13.1897	1.58e-05	0.00585	GTCCCACCCACCACG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	33	47	-	10.6379	1.58e-05	0.0287	TTCCTCCCACGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	33	47	-	10.6379	1.58e-05	0.0287	TTCCTCCCACGCCTC
EGR3	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	68	82	+	10.6379	1.58e-05	0.0287	TTCCTCCCACGCCTC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	+	13.2586	1.58e-05	0.0537	TCCCCGCAGGGGT
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	34	+	14	1.58e-05	0.126	GACAGCTGGCA
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	34	+	14	1.58e-05	0.126	GACAGCTGGCA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	46	+	14	1.58e-05	0.126	GGCAGCTGCCC
Tcf12	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	36	46	-	14	1.58e-05	0.126	GGCAGCTGCCC
Tcf12	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	79	+	14	1.58e-05	0.126	GGCAGCTGCCC
Rxra	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	63	-	7.64634	1.58e-05	0.264	AGGGCCAAAGTTTA
Rxra	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	92	-	7.64634	1.58e-05	0.264	AGGGCCAAAGTTTA
MLXIPL	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	13.8636	1.58e-05	0.171	GACACGTGAT
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	13.8636	1.58e-05	0.171	GACACGTGAT
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	14	30	+	7.83607	1.58e-05	0.563	AGGCCAATGAGGGGGCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	14	30	+	7.83607	1.58e-05	0.563	AGGCCAATGAGGGGGCA
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	13	26	-	13.5455	1.58e-05	0.0281	GCGGGCCTGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	13	26	-	13.5455	1.58e-05	0.0281	GCGGGCCTGGCCTC
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	24	43	-	8.2844	1.58e-05	0.0424	CCCCCCACCTCCGGCCCCCA
KLF13	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	31	48	+	9.32759	1.58e-05	0.131	GGGCCACGCCCCGGCGTG
KLF13	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	67	84	-	9.32759	1.58e-05	0.131	GGGCCACGCCCCGGCGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	13.4423	1.58e-05	0.0683	CCCGGAAGTT
ETV6	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	13.4423	1.58e-05	0.0683	CCCGGAAGTT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	54	71	+	-6.72368	1.58e-05	0.0275	GGAAGGGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	54	71	+	-6.72368	1.58e-05	0.0275	GGAAGGGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	61	78	-	-6.72368	1.58e-05	0.0275	GGAAGGGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	61	78	-	-6.72368	1.58e-05	0.0275	GGAAGGGGGGAGGCCGAG
REST	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	79	99	+	8.93878	1.58e-05	0.204	CAGAGCCCCGTGGCCAGCGGC
REST	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	79	99	+	8.93878	1.58e-05	0.204	CAGAGCCCCGTGGCCAGCGGC
Sox11	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	71	85	+	-5.6	1.58e-05	1	AAAAATAGCAGTGTG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	44	58	-	11.9016	1.58e-05	0.0332	GGACACGCCCAGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	20	32	+	12	1.58e-05	0.108	TACCCGGAAGCCG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	20	32	+	12	1.58e-05	0.108	TACCCGGAAGCCG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	20	32	+	12	1.58e-05	0.108	TACCCGGAAGCCG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	74	86	+	12	1.58e-05	0.108	TACCCGGAAGCCG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	74	86	+	12	1.58e-05	0.108	TACCCGGAAGCCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	+	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	+	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	-	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	+	13.377	1.58e-05	0.0626	TGCCTCGGAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	+	13.377	1.58e-05	0.0626	TGCCTCGGAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	-	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	-	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	+	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	-	13.377	1.58e-05	0.0626	CGCCCCGGAGGCC
USF2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	31	41	-	13.6939	1.58e-05	0.0775	CGCACGTGACC
USF2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	78	+	13.6939	1.58e-05	0.0775	CGCACGTGACC
RXRG	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	63	-	7.02128	1.58e-05	0.347	AGGGCCAAAGTTTA
RXRG	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	92	-	7.02128	1.58e-05	0.347	AGGGCCAAAGTTTA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	74	+	11.6429	1.58e-05	0.0969	CGCCCCCTGCCACGC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	18	28	+	13.5455	1.58e-05	0.0428	TGCTACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	18	28	+	13.5455	1.58e-05	0.0428	TGCTACACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	18	28	+	13.5455	1.58e-05	0.0428	TGCTACACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	18	28	+	13.5455	1.58e-05	0.0428	TGCTACACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	18	28	+	13.5455	1.58e-05	0.0428	TGCTACACCCA
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	59	-	13.5955	1.59e-05	0.99	TGAACAGATGGT
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	59	-	13.5955	1.59e-05	0.99	TGAACAGATGGT
Sox1	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	+	9.18966	1.59e-05	1	GACAATTAAATTGTA
Sox1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	-	9.18966	1.59e-05	1	GACAATTAAATTGTA
Sox1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	-	9.18966	1.59e-05	1	GACAATTAAATTGTA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	23	36	-	13.7885	1.59e-05	0.143	AGTGGCTGAGTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	53	66	+	13.7885	1.59e-05	0.143	AGTGGCTGAGTCAT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	+	13.6545	1.59e-05	0.063	CGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	+	13.6545	1.59e-05	0.063	CGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	+	13.6545	1.59e-05	0.063	CGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	+	13.6545	1.59e-05	0.063	CGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	+	13.6545	1.59e-05	0.063	CGCCCGAGGCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	16	36	-	12.3469	1.59e-05	0.00851	AGGGCAGGGCGGGGCGGGACG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	20	40	-	12.3469	1.59e-05	0.00851	GAAGCAGGGAGAGTCAGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	24	44	-	12.3469	1.59e-05	0.00851	GGAGGCGGGGTCAGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	24	44	-	12.3469	1.59e-05	0.00851	GGAGGCGGGGTCAGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	35	55	-	12.3469	1.59e-05	0.00851	TGGGAAGGGAGAGGCGGTGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	35	55	-	12.3469	1.59e-05	0.00851	TGGGAAGGGAGAGGCGGTGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	80	-	12.3469	1.59e-05	0.00851	TGGGGAGCAGCGGGGTGGGGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	80	-	12.3469	1.59e-05	0.00851	TGGGGAGCAGCGGGGTGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	80	-	12.3469	1.59e-05	0.00851	TGGGGAGCAGCGGGGTGGGGT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	19	39	+	12.3469	1.59e-05	0.00851	GGTGGAGCAGGGCGGGGAGTT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	19	39	+	12.3469	1.59e-05	0.00851	GGTGGAGCAGGGCGGGGAGTT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	31	51	+	12.3469	1.59e-05	0.00851	GAAGCAGGGAGAGTCAGGAAA
NR2C2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	9	23	+	12.4857	1.59e-05	0.0871	AGGGGGGAGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	34	-	12.4857	1.59e-05	0.0871	TGGGTGCAAAGGTGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	34	-	12.4857	1.59e-05	0.0871	TGGGTGCAAAGGTGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	23	37	-	12.4857	1.59e-05	0.0871	TGGGGGCAGAGGCGG
NR2C2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	92	106	-	12.4857	1.59e-05	0.0871	AGGGGGGAGGGGTGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	71	87	-	8.78182	1.59e-05	0.0144	GAGGTCCCGCCCCCAAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	71	87	-	8.78182	1.59e-05	0.0144	GAGGTCCCGCCCCCAAG
NFYB	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	38	52	+	13.5192	1.59e-05	0.0907	CGCGGAGCCAATCAC
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	63	77	-	13.5192	1.59e-05	0.0907	CGCGGAGCCAATCAC
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	63	77	-	13.5192	1.59e-05	0.0907	CGCGGAGCCAATCAC
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	63	77	-	13.5192	1.59e-05	0.0907	CGCGGAGCCAATCAC
PLAG1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	28	41	-	9.84694	1.59e-05	0.0605	GAGTGGCTGGGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	74	87	+	9.84694	1.59e-05	0.0605	GAGTGGCTGGGGGG
Mafb	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	44	55	-	13.1573	1.59e-05	0.581	AAATAGCTGACT
Mafb	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	44	55	-	13.1573	1.59e-05	0.581	AAATAGCTGACT
Mafb	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	44	55	-	13.1573	1.59e-05	0.581	AAATAGCTGACT
Mafb	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	44	55	-	13.1573	1.59e-05	0.581	AAATAGCTGACT
Mafb	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	44	55	-	13.1573	1.59e-05	0.581	AAATAGCTGACT
Mafb	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	60	71	+	13.1573	1.59e-05	0.581	AAATAGCTGACT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	99	111	-	13.2951	1.59e-05	0.359	GAGTCTCTCAGCT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	91	105	+	12.9455	1.59e-05	0.0974	GGCTCCCCGCTGACC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	40	50	+	12.6034	1.59e-05	0.0586	CCACCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	40	50	+	12.6034	1.59e-05	0.0586	CCACCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	40	50	+	12.6034	1.59e-05	0.0586	CCACCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	40	50	+	12.6034	1.59e-05	0.0586	CCACCCACGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	51	61	-	12.6034	1.59e-05	0.0586	CCACCCACGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	65	75	-	12.6034	1.59e-05	0.0586	CCACCCACGCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	20	30	-	13.0732	1.59e-05	0.0107	ACCCCGCCCAT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	20	30	-	13.0732	1.59e-05	0.0107	ACCCCGCCCAT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	20	30	-	13.0732	1.59e-05	0.0107	ACCCCGCCCAT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	20	30	-	13.0732	1.59e-05	0.0107	ACCCCGCCCAT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	67	77	+	13.0345	1.59e-05	0.215	CGCTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	67	77	+	13.0345	1.59e-05	0.215	CGCTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	101	111	+	13.0345	1.59e-05	0.215	CGCTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	101	111	+	13.0345	1.59e-05	0.215	CGCTGTGGTTG
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	27	41	-	13.6531	1.59e-05	0.604	AGCCTGTTTGCTCTG
Creb5	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	18	29	+	12.6364	1.59e-05	0.105	TCTGACGTCACG
Creb5	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	86	97	-	12.6364	1.59e-05	0.105	TCTGACGTCACG
GLI2	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	44	55	-	13.069	1.59e-05	0.33	GCCACCACACTG
HSF1	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	62	74	+	11.2623	1.59e-05	1	TTCAGGAACATTC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	+	13.2414	1.59e-05	0.0537	GGCCCGAGGGGCG
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	98	107	-	12.6939	1.59e-05	0.597	ATGGCGCAAC
CEBPG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	98	107	-	12.6939	1.59e-05	0.597	ATGGCGCAAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	98	107	-	13	1.59e-05	0.765	ATGGCGCAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	98	107	-	13	1.59e-05	0.765	ATGGCGCAAC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.3091	1.59e-05	0.0818	GCCGGAAGTC
Gata1	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	4	14	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	16	26	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	34	44	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	47	57	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	47	57	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	47	57	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	47	57	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	47	57	-	13.8367	1.59e-05	0.687	TCCTTATCTCA
Gata1	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	71	81	+	13.8367	1.59e-05	0.687	TCCTTATCTCA
ATF7	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	17	30	-	11.4714	1.59e-05	0.0985	GGGTGACGTCAGGG
ATF7	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	85	98	+	11.4714	1.59e-05	0.0985	GGGTGACGTCAGGG
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	18	29	+	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	26	37	-	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	26	37	-	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	33	44	-	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	71	82	-	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	93	104	-	11.3673	1.59e-05	0.0827	GCTGACGTCAGG
Foxj3	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	51	67	-	13.3636	1.59e-05	1	GGTAAGTAAACAACGGT
ELF1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	29	-	12.6545	1.59e-05	0.0817	GAAGCGGAAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	86	97	+	12.6545	1.59e-05	0.0817	GAAGCGGAAGTG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	30	43	-	13.0577	1.59e-05	0.0101	ACACCGCCCACTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	30	43	-	13.0577	1.59e-05	0.0101	ACACCGCCCACTCG
EGR1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	32	45	-	13.0577	1.59e-05	0.0101	GCACCGCCTACGCG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	5	25	-	12.2742	1.59e-05	0.133	ATTTTCTTTCACTCTCAGTGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	23	37	+	13.1724	1.59e-05	0.00585	TTCCCTCCCACCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	40	+	13.1724	1.59e-05	0.00585	CCTCCGCCCACTCGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	40	+	13.1724	1.59e-05	0.00585	CCTCCGCCCACTCGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	28	42	+	13.1724	1.59e-05	0.00585	CTCCTGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	28	42	+	13.1724	1.59e-05	0.00585	CTCCTGCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	28	42	+	13.1724	1.59e-05	0.00585	CTCCTGCCCCTCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	28	42	+	13.1724	1.59e-05	0.00585	CTCCTGCCCCTCCCC
SP2	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	43	57	+	13.1724	1.59e-05	0.00585	CGCCCGCCTCTTTTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	55	69	+	13.1724	1.59e-05	0.00585	TCTCCTCCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	55	69	+	13.1724	1.59e-05	0.00585	TCTCCTCCCCCTCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	77	+	13.1724	1.59e-05	0.00585	ACCCCTCCCACTGCC
SP2	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	87	+	13.1724	1.59e-05	0.00585	TCCCCACCCCCACCA
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	90	104	+	13.1724	1.59e-05	0.00585	CCTCCGCCTCCAGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	99	113	+	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	99	113	+	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	99	113	+	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	99	113	+	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	11	25	-	13.1724	1.59e-05	0.00585	CCTCCGCCTCCGCTG
SP2	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	28	42	-	13.1724	1.59e-05	0.00585	TCCCCACCCCCACCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	29	43	-	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	29	43	-	13.1724	1.59e-05	0.00585	AGCCCGCCCTCGCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	29	43	-	13.1724	1.59e-05	0.00585	AGCCCGCCCTCGCGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	41	55	-	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	41	55	-	13.1724	1.59e-05	0.00585	TGCCCGCCCACAGCC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	73	87	-	13.1724	1.59e-05	0.00585	CTCCTGCCCCTCCCC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	9	18	-	12.4242	1.59e-05	0.123	GGAGGGGTAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	28	37	+	12.4242	1.59e-05	0.123	GGAGGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	28	37	+	12.4242	1.59e-05	0.123	GGAGGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	53	62	-	12.4242	1.59e-05	0.123	GGAGGGGGAT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	53	62	-	12.4242	1.59e-05	0.123	GGAGGGGGAT
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	78	87	-	12.4242	1.59e-05	0.123	GGAGGGGTAG
Gmeb1	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	20	36	-	11.7632	1.59e-05	0.537	GTGTGTGCGTCCGTCGC
IRF7	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	28	41	-	12.129	1.59e-05	0.459	CCGGAAGCGAAAAT
PAX5	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	52	70	-	12.9677	1.6e-05	0.137	AGGGGAAGTAAAGCAAGGC
EHF	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	47	58	+	13.0984	1.6e-05	0.0919	AGGCCGGAAGTA
EHF	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	56	67	+	13.0984	1.6e-05	0.0919	ATCCAGGAAGTG
EHF	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	48	59	-	13.0984	1.6e-05	0.0919	ATCCAGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	68	-	13.0984	1.6e-05	0.0919	AGGCCGGAAGTA
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	72	83	-	13.3269	1.6e-05	0.106	GAATATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	72	83	-	13.3269	1.6e-05	0.106	GAATATGGCGGC
REL	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	101	110	+	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	5	14	-	13.1111	1.6e-05	0.228	TGGGGTTTCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	20	29	+	13.156	1.6e-05	0.034	ACCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	16	25	-	13.156	1.6e-05	0.034	ACCCCCCCGC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	51	60	+	13.156	1.6e-05	0.034	ACCCCCCCGC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	69	78	+	13.156	1.6e-05	0.034	ACCCCCCCGC
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	22	32	-	13.4423	1.6e-05	0.0649	AGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	32	42	-	13.4423	1.6e-05	0.0649	CGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	32	42	-	13.4423	1.6e-05	0.0649	CGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	89	99	-	13.4423	1.6e-05	0.0649	AGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	89	99	-	13.4423	1.6e-05	0.0649	AGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	89	99	-	13.4423	1.6e-05	0.0649	AGCCTCCGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	16	26	+	13.4423	1.6e-05	0.0649	AGCCTCCGGCG
SCRT1	WILDTYPE__mrna.noflip.NA__chr10:14574678..14574792,-__974.1.0.0	80	94	-	11.623	1.6e-05	0.494	CAGCCACAAGTGTCT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	2	12	+	14.1837	1.6e-05	0.13	AAATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	2	12	+	14.1837	1.6e-05	0.13	AAATGACTCAT
JUNB	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	34	44	+	14.1837	1.6e-05	0.13	AAATGACTCAT
JUNB	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	71	81	-	14.1837	1.6e-05	0.13	AAATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	102	112	-	14.1837	1.6e-05	0.13	AAATGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	102	112	-	14.1837	1.6e-05	0.13	AAATGACTCAT
XBP1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	72	85	+	12.8077	1.6e-05	0.446	GATGCGACGTCACC
ZBTB33	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	29	43	-	13.0758	1.6e-05	0.062	GTCCCGCGCTGCCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	29	43	-	13.0758	1.6e-05	0.062	GTCCCGCGCTGCCTC
ZBTB33	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	80	94	+	13.0758	1.6e-05	0.062	GTCCCGCGCTGCCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	80	94	+	13.0758	1.6e-05	0.062	GTCCCGCGCTGCCTC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	40	59	-	8.24771	1.6e-05	0.0424	TCACCCACCCCCCACCCCCA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	22	41	+	8.24771	1.6e-05	0.0424	CACCCCACCCCCCCCGCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	22	41	+	8.24771	1.6e-05	0.0424	CACCCCACCCCCCCCGCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	22	41	+	8.24771	1.6e-05	0.0424	CACCCCACCCCCCCCGCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	22	41	+	8.24771	1.6e-05	0.0424	CACCCCACCCCCCCCGCCCC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	-	13.1122	1.6e-05	0.0857	AGCCTCAGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	+	13.1122	1.6e-05	0.0857	CGCCTCCGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	+	13.1122	1.6e-05	0.0857	CGCCTCCGGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	-	13.1122	1.6e-05	0.0857	TGCCTGCGGGCT
Rxra	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	17	-	7.60976	1.6e-05	0.264	GGTGTCAGAGGTTA
TAL1::TCF3	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	27	38	+	13.5843	1.6e-05	0.99	GGAACATCTGGA
TAL1::TCF3	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	77	88	-	13.5843	1.6e-05	0.99	GGAACATCTGGA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	99	113	-	13.0385	1.6e-05	0.793	CCCGCGTCGCACACA
CENPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	99	113	-	13.0385	1.6e-05	0.793	CCCGCGTCGCACACA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	99	113	-	13.0385	1.6e-05	0.793	CCCGCGTCGCACACA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	99	113	-	13.0385	1.6e-05	0.793	CCCGCGTCGCACACA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	62	76	+	12.4714	1.6e-05	0.0871	AGGGGGCGGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	62	76	+	12.4714	1.6e-05	0.0871	AGGGGGCGGGGGTGG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ETV5	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.6364	1.6e-05	0.0689	GCCGGAAGTT
ELK4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	46	56	+	13.6909	1.6e-05	0.0393	TGGCTTCCGGT
CREB3	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	25	38	-	12.7571	1.6e-05	0.205	GATCCACGTCACAT
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.1	44	62	+	12.9677	1.6e-05	0.671	TGCCCTGAGTTGACCTAAT
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.0.0	44	62	+	12.9677	1.6e-05	0.671	TGCCCTGAGTTGACCTAAT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.0	44	62	+	12.9677	1.6e-05	0.671	TGCCCTGAGTTGACCTAAT
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	45	54	-	12.9355	1.6e-05	1	GTTTTCCATA
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	45	54	-	12.9355	1.6e-05	1	GTTTTCCATA
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	45	54	-	12.9355	1.6e-05	1	GTTTTCCATA
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	45	54	-	12.9355	1.6e-05	1	GTTTTCCATA
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	45	54	-	12.9355	1.6e-05	1	GTTTTCCATA
E2F6	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	15	25	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	30	40	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	30	40	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	30	40	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	30	40	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	62	72	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	89	99	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	94	104	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	94	104	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	100	110	-	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	5	15	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	5	15	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	11	21	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	43	53	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	53	63	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	53	63	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	53	63	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	53	63	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	60	70	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
E2F6	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	90	100	+	13.8276	1.6e-05	0.0335	AGGAGGGAGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	23	33	+	13.5902	1.6e-05	0.0357	CCGGAAGCCGT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	23	33	+	13.5902	1.6e-05	0.0357	CCGGAAGCCGT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	23	33	+	13.5902	1.6e-05	0.0357	CCGGAAGCCGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	77	87	+	13.5902	1.6e-05	0.0357	CCGGAAGCCGT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	77	87	+	13.5902	1.6e-05	0.0357	CCGGAAGCCGT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	10	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	10	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	15	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	15	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	15	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	15	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	15	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	19	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	19	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	20	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	11	20	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	14	23	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	6	15	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	6	15	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	6	15	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	6	15	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	24	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	6	15	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	17	26	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	8	17	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	11	20	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	30	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	12	21	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	12	21	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	13	22	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	13	22	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	17	26	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	17	26	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	37	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	37	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	26	35	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	26	35	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	26	35	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	26	35	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	28	37	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	28	37	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	28	37	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	28	37	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	33	42	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	33	42	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	50	59	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	61	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	61	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	44	53	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	62	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	44	53	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	44	53	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	44	53	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	54	63	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	54	63	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	56	65	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	82	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	84	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	78	87	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	102	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	85	94	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	109	+	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	95	104	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	100	109	-	13.8163	1.6e-05	0.00897	GCTCCGCCCC
ATF7	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	17	30	-	11.4429	1.6e-05	0.0986	GGATGAGGTCATCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	12	22	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	15	25	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	6	16	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	6	16	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	19	29	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	19	29	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	21	31	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	22	32	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	22	32	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	22	32	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	22	32	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	12	22	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	12	22	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	24	34	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	15	25	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	28	38	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	28	38	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	22	32	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	22	32	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	36	46	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	28	38	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	28	38	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	47	57	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	47	57	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	47	57	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	39	49	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	40	50	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	40	50	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	40	50	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	40	50	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	54	64	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	54	64	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	55	65	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	55	65	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	51	61	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	57	67	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	58	68	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	63	73	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	77	87	+	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	68	78	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	68	78	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	71	81	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	81	91	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	84	94	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	90	100	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	103	113	-	12.5517	1.6e-05	0.0586	CCGCCCCCGCC
KLF14	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	14	27	+	12.2759	1.61e-05	0.0202	AGTCCCGCCCCTCA
KLF14	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	31	44	+	12.2759	1.61e-05	0.0202	GGCCCCGCCTCCTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	48	61	-	12.2759	1.61e-05	0.0202	GGCCACTCCCCTCA
EGR4	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	29	44	+	12.8	1.61e-05	0.0361	TCCCGCCCCCGGACCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	10	30	-	12.3265	1.61e-05	0.00854	AGAGAAAGTGGAAGAGGAAAG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	12	32	-	12.3265	1.61e-05	0.00854	GAGAAAGGAAGGGAGGGAAAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	29	49	-	12.3265	1.61e-05	0.00854	AAAGGAAGGGGAGGTGTTGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	69	89	-	12.3265	1.61e-05	0.00854	AGAAGAGGAAGCACAAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	69	89	-	12.3265	1.61e-05	0.00854	AGAAGAGGAAGCACAAGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	79	99	-	12.3265	1.61e-05	0.00854	GAGAAAGGAAGGGAGGGAAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	16	36	+	12.3265	1.61e-05	0.00854	GAGAAAGGAAGGGAGGGAAAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	19	39	+	12.3265	1.61e-05	0.00854	GGGTGTGGAGGCGGGGAGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	55	75	+	12.3265	1.61e-05	0.00854	AGAGAAAGTGGAAGAGGAAAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	64	84	+	12.3265	1.61e-05	0.00854	AGAAGAGGAAGCACAAGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	70	90	+	12.3265	1.61e-05	0.00854	GGTGGAGGGGGCAGTTGGGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	83	103	+	12.3265	1.61e-05	0.00854	GAGAAAGGAAGGGAGGGAAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	85	105	+	12.3265	1.61e-05	0.00854	AGAGAAAGTGGAAGAGGAAAG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	+	13.3279	1.61e-05	0.0554	CGCCCGGAGGGGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	60	74	+	11.6143	1.61e-05	0.097	CCCCCCCTGCCGCTG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	64	83	-	8.23853	1.61e-05	0.0424	CTCCTCCACAACCCCACCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	64	83	-	8.23853	1.61e-05	0.0424	CTCCTCCACAACCCCACCCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	-	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	-	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	-	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	-	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	+	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	+	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	+	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	+	13.3455	1.61e-05	0.0397	TCCCTCAGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	80	90	+	13.3455	1.61e-05	0.0397	AGCCTCGGGCT
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	37	50	-	13.5152	1.61e-05	0.0283	AGGAGCTCGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	37	50	-	13.5152	1.61e-05	0.0283	AGGAGCTCGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	98	111	+	13.5152	1.61e-05	0.0283	GCCGACCCGGCCTG
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	+	14.0303	1.61e-05	1	GGCATATGTC
MEF2A	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	88	+	12.4032	1.61e-05	0.657	GCTAATTATAGA
E2F8	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	23	34	+	8.64634	1.61e-05	0.631	CTTCCCACCAAC
E2F8	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	81	92	-	8.64634	1.61e-05	0.631	CTTCCCACCAAC
MEF2C	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	26	40	+	13.2542	1.61e-05	0.462	TTTCTAAATATAGCA
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	42	56	-	13.2542	1.61e-05	0.462	TTTCTAAATATAGCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	42	56	-	13.2542	1.61e-05	0.462	TTTCTAAATATAGCA
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	22	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	23	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	37	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	37	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	39	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	39	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	49	58	+	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	59	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	59	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	62	71	+	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	62	71	+	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	66	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	66	-	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	76	85	+	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	78	87	+	13.0816	1.61e-05	0.0114	AGGGCGGGGG
Pax6	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	23	36	+	12.9444	1.61e-05	1	TTCACGCAGGGCTG
Pax6	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	79	92	-	12.9444	1.61e-05	1	TTCACGCAGGGCTG
IRF2	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	41	58	-	9.66972	1.61e-05	0.474	GTAAAATGAAACCTAAGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	-	14.1455	1.61e-05	0.133	AGTGAGTCACC
Gfi1b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	66	76	-	13.569	1.61e-05	0.372	CAATCAGAGCT
Gfi1b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	66	76	-	13.569	1.61e-05	0.372	CAATCAGAGCT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	+	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	-	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	-	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	+	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	+	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	+	13.2241	1.61e-05	0.0537	TGCCCTTTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	+	13.2241	1.61e-05	0.0537	TGCCCTTTGGGCG
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	+	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	-	13.2241	1.61e-05	0.0537	GGCCTCCGGGGCG
SP1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	7	17	-	13.5577	1.61e-05	0.0068	TCTCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	29	39	-	13.5577	1.61e-05	0.0068	TCTCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	33	43	-	13.5577	1.61e-05	0.0068	GTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	36	46	-	13.5577	1.61e-05	0.0068	GCCCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	36	46	-	13.5577	1.61e-05	0.0068	GCCCCTCCTTC
SP1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	45	55	-	13.5577	1.61e-05	0.0068	TTTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	58	68	+	13.5577	1.61e-05	0.0068	TTTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	69	79	+	13.5577	1.61e-05	0.0068	GCCCCTCCTTC
SP1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	98	108	+	13.5577	1.61e-05	0.0068	TCTCCGCCTCC
Hic1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	1	9	+	12.7885	1.61e-05	0.516	GTGCCAACT
Hic1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	106	114	-	12.7885	1.61e-05	0.516	GTGCCAACT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	-	13.102	1.61e-05	0.0857	CGCCTGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	-	13.102	1.61e-05	0.0857	CGCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	-	13.102	1.61e-05	0.0857	CGCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	-	13.102	1.61e-05	0.0857	CGCCTGGGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	22	35	-	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	22	35	-	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	43	56	+	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	43	56	+	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	59	72	-	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	80	93	+	9.79592	1.61e-05	0.0605	CGGGGCCTAGGGGA
HES7	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	13	+	8.27586	1.61e-05	0.189	CGTCACGTGCCC
HES7	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	34	-	8.27586	1.61e-05	0.189	CGTCACGTGCCC
HES7	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	92	+	8.27586	1.61e-05	0.189	CGTCACGTGCCC
HES7	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	113	-	8.27586	1.61e-05	0.189	CGTCACGTGCCC
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	81	93	+	7.55102	1.61e-05	0.233	CAGGGATCCCCCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	81	93	+	7.55102	1.61e-05	0.233	CAGGGATCCCCCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	24	34	+	13.4231	1.61e-05	0.0649	AGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	24	34	+	13.4231	1.61e-05	0.0649	AGCCTGCGGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	8	21	-	13.0385	1.61e-05	0.0101	GCTCAGCCCACGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	8	21	-	13.0385	1.61e-05	0.0101	GCTCAGCCCACGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	34	47	+	13.0385	1.61e-05	0.0101	GCTCAGCCCACGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	45	58	+	13.0385	1.61e-05	0.0101	CGCTCGCCCACGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	45	58	+	13.0385	1.61e-05	0.0101	CGCTCGCCCACGCA
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	40	53	-	13.0385	1.61e-05	0.0101	CCCCCACCCTCGGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	75	+	13.0385	1.61e-05	0.0101	CCCCCACCCTCGGC
ELF4	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	5	16	+	12.5082	1.61e-05	0.0724	GACCAGGAAGTT
ELF4	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	26	37	+	12.5082	1.61e-05	0.0724	AACCCGGAAGAA
ELF4	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	78	89	-	12.5082	1.61e-05	0.0724	AACCCGGAAGAA
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	58	69	+	13.2545	1.61e-05	0.0548	CGCCTTGGGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	89	100	+	13.2545	1.61e-05	0.0548	TCCCTCCAGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	15	26	-	13.2545	1.61e-05	0.0548	TCCCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	23	34	-	13.2545	1.61e-05	0.0548	TCCCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	23	34	-	13.2545	1.61e-05	0.0548	TCCCTCCAGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	46	57	-	13.2545	1.61e-05	0.0548	CGCCTTGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	-	13.2545	1.61e-05	0.0548	TGCCCACGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	-	13.2545	1.61e-05	0.0548	TGCCCACGGGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	10.4919	1.61e-05	0.0378	GTCACGTGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	10.4919	1.61e-05	0.0378	GGCACGTGAC
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	10.4919	1.61e-05	0.0378	GTCACGTGCC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	98	107	-	12.76	1.61e-05	0.744	ATGGCGCAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	98	107	-	12.76	1.61e-05	0.744	ATGGCGCAAC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	92	102	-	13.0182	1.61e-05	0.00927	GCCCATGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	92	102	-	13.0182	1.61e-05	0.00927	GCCCATGCGCC
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	45	54	-	12.0732	1.61e-05	0.407	TAAATCACCG
Gfi1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	45	54	-	12.0732	1.61e-05	0.407	TAAATCACCG
SP8	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	38	49	-	13.0789	1.61e-05	0.0171	ACCCCGCCCCGC
SP8	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	46	57	-	13.0789	1.61e-05	0.0171	CACACACCCACT
SP8	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	77	+	13.0789	1.61e-05	0.0171	ACCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	70	81	-	13.0789	1.61e-05	0.0171	ACCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	70	81	-	13.0789	1.61e-05	0.0171	ACCCCGCCCCGC
ELF5	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	19	-	12.9273	1.61e-05	0.0978	TACCGGAAGTA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	19	29	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	19	29	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	19	29	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	19	29	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	25	35	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	35	45	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	35	45	+	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	63	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	73	83	+	12.9273	1.61e-05	0.0978	TACCGGAAGTA
ELF5	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	80	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	90	-	12.9273	1.61e-05	0.0978	AACAGGAAGTT
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	33	43	+	13.5	1.61e-05	0.0428	GACCCCGCCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	56	66	+	13.5	1.61e-05	0.0428	GACCCCGCCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	49	59	-	13.5	1.61e-05	0.0428	GACCCCGCCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	72	82	-	13.5	1.61e-05	0.0428	GACCCCGCCCT
Barhl1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	7	16	-	10.1698	1.61e-05	1	CTTAATTGCT
Barhl1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	7	16	-	10.1698	1.61e-05	1	CTTAATTGCT
Ascl2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	-	13.6571	1.61e-05	0.161	AACAGCTGCG
Ascl2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	+	13.6571	1.61e-05	0.161	AACAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	99	+	13.6571	1.61e-05	0.161	AACAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	99	+	13.6571	1.61e-05	0.161	AACAGCTGCA
ELF3	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	20	32	-	11.9483	1.61e-05	0.108	GTCCAGGAAGTAG
ELF3	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	53	65	+	11.9483	1.61e-05	0.108	GTCCAGGAAGTAG
ELF3	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	50	62	-	11.9483	1.61e-05	0.108	GTCCAGGAAGTAG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	-	13.3443	1.61e-05	0.0626	TGCCTGCAAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	-	13.3443	1.61e-05	0.0626	TGCCTGCAAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	26	38	+	13.3443	1.61e-05	0.0626	GCCCCGGGGGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	33	-	13.3443	1.61e-05	0.0626	GCCCCGGGGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	33	-	13.3443	1.61e-05	0.0626	GCCCCGGGGGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	+	13.3443	1.61e-05	0.0626	TGCCTGCAAGGCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	82	94	+	13.3443	1.61e-05	0.0626	GCCCCGGGGGGCA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	89	-	13.3443	1.61e-05	0.0626	GCCCCGGGGGGCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	2	16	-	13.0606	1.61e-05	0.062	GCCTCGCGCGCTTTC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	2	16	-	13.0606	1.61e-05	0.062	GCCTCGCGCGCTTTC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	2	16	-	13.0606	1.61e-05	0.062	GCCTCGCGCGCTTTC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	2	16	-	13.0606	1.61e-05	0.062	GCCTCGCGCGCTTTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	99	113	+	13.0606	1.61e-05	0.062	GCCTCGCGCGCTTTC
HSF2	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	81	93	+	12.3273	1.62e-05	1	TTCCAGAATTGTC
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	12	+	13.9388	1.62e-05	0.101	CGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	12	+	13.9388	1.62e-05	0.101	CGCAGCTGCAG
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	12	+	13.9388	1.62e-05	0.101	CGCAGCTGCAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	48	58	-	13.9388	1.62e-05	0.101	CGCAGCTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	48	58	-	13.9388	1.62e-05	0.101	CGCAGCTGCAG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	64	77	-	8.03636	1.62e-05	0.127	AAAAACAGGATGTT
FOSL2	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	39	49	+	14.2909	1.62e-05	0.135	AGGTGAGTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	63	73	+	14.2909	1.62e-05	0.135	CAGTGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	93	103	+	14.2909	1.62e-05	0.135	AGGTGAGTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	93	103	+	14.2909	1.62e-05	0.135	AGGTGAGTCAG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	19	29	-	14.2909	1.62e-05	0.135	AGATGAGTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	34	44	-	14.2909	1.62e-05	0.135	CAGTGACTCAT
TEAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	21	30	-	12.2742	1.62e-05	0.705	CACATTCCTA
TEAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	21	30	-	12.2742	1.62e-05	0.705	CACATTCCTA
KLF16	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	16	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	26	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	26	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	24	34	+	13.2241	1.62e-05	0.0115	GCCACGCCTAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	24	34	+	13.2241	1.62e-05	0.0115	GCCACGCCTAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	24	34	+	13.2241	1.62e-05	0.0115	GCCACGCCTAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	24	34	+	13.2241	1.62e-05	0.0115	GCCACGCCTAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	43	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	43	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	83	+	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	24	34	-	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	24	34	-	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	26	36	-	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	32	42	-	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	43	53	-	13.2241	1.62e-05	0.0115	TCCCCACCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	48	61	-	12.2586	1.62e-05	0.0202	GGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	48	61	-	12.2586	1.62e-05	0.0202	GGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	48	61	-	12.2586	1.62e-05	0.0202	GGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	48	61	-	12.2586	1.62e-05	0.0202	GGCCCCGCCCCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	62	76	-	10.569	1.62e-05	0.0287	CCCCGCCCCCGAACG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	62	76	-	10.569	1.62e-05	0.0287	CCCCGCCCCCGAACG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	62	76	-	10.569	1.62e-05	0.0287	CCCCGCCCCCGAACG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	62	76	-	10.569	1.62e-05	0.0287	CCCCGCCCCCGAACG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	88	101	+	13.5	1.62e-05	0.0284	ATGGGCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	88	101	+	13.5	1.62e-05	0.0284	ATGGGCTCGGCCTC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	76	-	12.6182	1.62e-05	0.0817	TTCCCGGAAGCA
RARA::RXRA	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	56	72	+	12.6531	1.62e-05	0.338	GGTTCAGTGTGACGTCA
RARA::RXRA	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	61	77	+	12.6531	1.62e-05	0.338	GGTTCAGTGTGACGTCA
RARA::RXRA	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	38	54	-	12.6531	1.62e-05	0.338	GGTTCAGTGTGACGTCA
RARA::RXRA	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	43	59	-	12.6531	1.62e-05	0.338	GGTTCAGTGTGACGTCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	46	60	+	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	53	67	-	13.2373	1.62e-05	0.462	AGGCTATAAATAGTT
JUND	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	51	61	+	14.0638	1.62e-05	0.169	TCTGAGTCATC
JUND	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	54	64	-	14.0638	1.62e-05	0.169	TCTGAGTCATC
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	13.5106	1.62e-05	0.0861	ACCGGATATG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	13.5106	1.62e-05	0.0861	ACCGGATATG
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	16	26	+	13.2245	1.62e-05	0.281	GACCACGCGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	16	26	+	13.2245	1.62e-05	0.281	GACCACGCGGC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	52	62	-	13.2245	1.62e-05	0.281	GACCACGCGGC
EGR4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	21	36	+	12.7818	1.62e-05	0.0364	CCACGCCCACGGCCCC
RORA(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	49	62	+	11.2921	1.62e-05	0.831	TAACAATAGGTCAG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	7	20	+	10.4043	1.62e-05	0.0959	CGCACCCCGCCGAG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	95	108	-	10.4043	1.62e-05	0.0959	CGCACCCCGCCGAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	25	42	-	-6.89474	1.62e-05	0.0281	AGGGAGGAGGGAGGAAGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	78	88	-	13.6727	1.62e-05	0.0396	TCACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	78	88	-	13.6727	1.62e-05	0.0396	TCACTTCCTGC
SRF	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	11	26	-	9.54098	1.62e-05	0.431	CTGCCTTATATGGGGG
SRF	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	27	42	+	9.54098	1.62e-05	0.431	CTGCCTTATATGGGGG
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	25	34	+	13.7636	1.62e-05	0.655	GACAGCTGAT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	42	62	-	12.3061	1.62e-05	0.00861	GAGGGAGGCAGGCTTGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	80	-	12.3061	1.62e-05	0.00861	TGGGGGGGAAGGGGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	82	102	-	12.3061	1.62e-05	0.00861	GGGGGCAGAGAAAGGGGGGTG
ZNF263	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	13	33	+	12.3061	1.62e-05	0.00861	GGGGGCAGAGAAAGGGGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	35	55	+	12.3061	1.62e-05	0.00861	TGGGGGGGAAGGGGGAGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	53	73	+	12.3061	1.62e-05	0.00861	GAGGGAGGCAGGCTTGGAGGA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	30	44	+	12.4429	1.62e-05	0.0871	CGGGGTGGGAGGGGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	33	47	+	12.4429	1.62e-05	0.0871	CCGGGGCAGAGGCGG
ZIC4	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	7	21	+	12.9091	1.62e-05	0.0974	CGCACCCCGCCGAGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	69	+	12.9091	1.62e-05	0.0974	GCCCCCCCCCCGCGC
ZIC4	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	94	108	-	12.9091	1.62e-05	0.0974	CGCACCCCGCCGAGC
Klf1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	61	71	+	13.4848	1.62e-05	0.0428	GCCCCCACCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	103	113	+	13.4848	1.62e-05	0.0428	GCCCCCACCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	44	54	-	13.4848	1.62e-05	0.0428	GCCCCCACCCT
ELF1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	38	49	-	12.6	1.62e-05	0.0817	ACCCAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	66	77	+	12.6	1.62e-05	0.0817	ACCCAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	66	77	+	12.6	1.62e-05	0.0817	ACCCAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	66	77	+	12.6	1.62e-05	0.0817	ACCCAGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	66	77	+	12.6	1.62e-05	0.0817	ACCCAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	13.3429	1.62e-05	0.0746	ACCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	13.3429	1.62e-05	0.0746	ACCGGAAGGG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	10	24	+	13.4808	1.63e-05	0.0907	CGTCGGGCCAATGGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	10	24	+	13.4808	1.63e-05	0.0907	CGTCGGGCCAATGGG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	4	17	-	13.75	1.63e-05	0.143	CATGAATGAGTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	4	17	-	13.75	1.63e-05	0.143	CATGAATGAGTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	31	44	-	13.75	1.63e-05	0.143	GAGAGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	97	110	+	13.75	1.63e-05	0.143	CATGAATGAGTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	97	110	+	13.75	1.63e-05	0.143	CATGAATGAGTCAT
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	-	12.1633	1.63e-05	0.184	AGTGACTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	-	12.1633	1.63e-05	0.184	AGTGACTCACC
NFE2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	+	12.1633	1.63e-05	0.184	AGTGACTCACC
SP2	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	28	42	+	13.1379	1.63e-05	0.00595	ACCCCTCCTCCCGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	11	25	-	13.1379	1.63e-05	0.00595	CTCCCGCCTTCATCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	11	25	-	13.1379	1.63e-05	0.00595	CTCCCGCCTTCATCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	34	48	-	13.1379	1.63e-05	0.00595	CCCCCACCCCCTTAG
SP2	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	41	55	-	13.1379	1.63e-05	0.00595	TTCCCGCCCTCTGGA
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	7	20	-	13.0192	1.63e-05	0.0102	GCACTGCCCCCGCA
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	95	108	+	13.0192	1.63e-05	0.0102	GCACTGCCCCCGCA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	19	-	13.2	1.63e-05	0.206	ACCCGGAAATG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	19	-	13.2	1.63e-05	0.206	ACCCGGAAATG
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	72	86	-	13.0769	1.63e-05	0.426	AAGTCACACCGCCCC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	72	86	-	13.0769	1.63e-05	0.426	AAGTCACACCGCCCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	72	86	-	13.0769	1.63e-05	0.426	AAGTCACACCGCCCC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	72	86	-	13.0769	1.63e-05	0.426	AAGTCACACCGCCCC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	13.6182	1.63e-05	0.0969	GCCACGTGGC
HEY1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	13.6182	1.63e-05	0.0969	GCCACGTGGC
ZIC3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	26	40	-	11.5857	1.63e-05	0.097	GCCCCCCCGCCGCCG
NRL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	10	20	+	12	1.63e-05	0.67	ATCTTGCTGAC
NRL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	10	20	+	12	1.63e-05	0.67	ATCTTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	10	20	+	12	1.63e-05	0.67	ATCTTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	10	20	+	12	1.63e-05	0.67	ATCTTGCTGAC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	23	32	+	13.2623	1.63e-05	0.142	GATCACGTGT
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	23	32	+	13.2623	1.63e-05	0.142	GATCACGTGT
Rhox11	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	66	82	+	13.1447	1.63e-05	1	AAGCAGCTGTTTTGGGT
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	99	107	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	102	110	+	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	5	13	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	6	14	-	13.3654	1.63e-05	0.442	AAACCACAA
RUNX2	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	71	79	-	13.3654	1.63e-05	0.442	AAACCACAA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	16	27	+	12.9839	1.63e-05	0.281	GGGACCACCAAT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	27	41	+	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	27	41	+	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	27	41	+	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	27	41	+	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	28	42	+	10.5517	1.63e-05	0.0287	CTCCACCCACCCACA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	28	42	+	10.5517	1.63e-05	0.0287	CTCCACCCACCCACA
EGR3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	22	36	-	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	52	66	+	10.5517	1.63e-05	0.0287	GCCCGCCCTCGCAGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	52	66	+	10.5517	1.63e-05	0.0287	GCCCGCCCTCGCAGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	52	66	+	10.5517	1.63e-05	0.0287	GCCCGCCCTCGCAGC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	79	93	+	10.5517	1.63e-05	0.0287	CACCCCCCCCGCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	34	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	34	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	34	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	34	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	23	34	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	29	40	-	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	53	64	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	86	+	13.0658	1.63e-05	0.0171	ACCCCACCCCCC
PAX5	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	74	92	+	12.9355	1.63e-05	0.137	GAGAGCGCCAGTGCGTAGC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	6	23	+	12.3902	1.63e-05	0.0737	CGGGCGTCCATTGGTCGG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	6	23	+	12.3902	1.63e-05	0.0737	CGGGCGTCCATTGGTCGG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	6	23	+	12.3902	1.63e-05	0.0737	CGGGCGTCCATTGGTCGG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	6	23	+	12.3902	1.63e-05	0.0737	CGGGCGTCCATTGGTCGG
NFYA	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	31	48	+	12.3902	1.63e-05	0.0737	CCCACCCCGATTGGCCCG
NFYA	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	67	84	-	12.3902	1.63e-05	0.0737	CCCACCCCGATTGGCCCG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	42	54	+	7.4898	1.63e-05	0.233	AGGGAGACCCCCA
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	55	68	+	10.0976	1.63e-05	0.5	TGTGCGCCCGTCGC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	55	68	+	10.0976	1.63e-05	0.5	TGTGCGCCCGTCGC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	55	68	+	10.0976	1.63e-05	0.5	TGTGCGCCCGTCGC
MTF1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	47	60	-	10.0976	1.63e-05	0.5	TGTGCGCCCGTCGC
GSC	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	32	41	+	12.5094	1.63e-05	1	CTTAATCCCT
GLI2	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	89	100	-	13.0345	1.63e-05	0.33	AAGACCACACAG
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	49	63	+	12.6111	1.63e-05	0.317	TTATATAAGCCCGGG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	49	63	+	12.6111	1.63e-05	0.317	TTATATAAGCCCGGG
TBP	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	49	63	+	12.6111	1.63e-05	0.317	CTATAAAACCCCTGC
TBP	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	52	66	-	12.6111	1.63e-05	0.317	CTATAAAACCCCTGC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	29	43	-	11.8361	1.63e-05	0.034	GGCCCCGCCCCAGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	29	43	-	11.8361	1.63e-05	0.034	GGCCCCGCCCCAGCC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	30	40	-	14.1633	1.63e-05	0.13	GTATGACTCAT
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	47	56	+	13.6939	1.63e-05	0.702	CGAAGGTCAC
Esrrg	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	47	56	+	13.6939	1.63e-05	0.702	CGAAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	47	56	+	13.6939	1.63e-05	0.702	CGAAGGTCAC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	47	56	+	13.6939	1.63e-05	0.702	CGAAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	47	56	+	13.6939	1.63e-05	0.702	CGAAGGTCAC
Esrrg	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	59	68	-	13.6939	1.63e-05	0.702	CGAAGGTCAC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	22	42	+	12.2258	1.63e-05	0.134	TTTTTCTTTTTTTTTTTTTTC
ELK1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	13.3191	1.63e-05	0.0492	CCCGGAAGTA
ELK1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	13.3191	1.63e-05	0.0492	CCCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	75	-	13.4231	1.63e-05	0.0698	CGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	75	-	13.4231	1.63e-05	0.0698	CGCGGAAGCG
Mafb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	10	21	+	13.1124	1.63e-05	0.581	ATCTTGCTGACG
Mafb	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	10	21	+	13.1124	1.63e-05	0.581	ATCTTGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	10	21	+	13.1124	1.63e-05	0.581	ATCTTGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	10	21	+	13.1124	1.63e-05	0.581	ATCTTGCTGACG
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	59	+	7.56098	1.63e-05	0.264	AGGGCCAAAGGTTG
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	59	+	7.56098	1.63e-05	0.264	AGGGCCAAAGGTTG
Rxra	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	103	-	7.56098	1.63e-05	0.264	AGGGCCAAAGGTTG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	-	13.0918	1.63e-05	0.0857	AGCCCGGAGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	-	13.0918	1.63e-05	0.0857	AGCCCGGAGGCG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	57	69	+	7.46939	1.63e-05	0.233	AGGGGCTTTCCCC
HES5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	19	-	8.56897	1.63e-05	0.213	CGCCACGTGGCC
HES5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	19	-	8.56897	1.63e-05	0.213	CGCCACGTGGCC
HES5	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	107	+	8.56897	1.63e-05	0.213	CGCCACGTGGCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	5	14	-	13.7857	1.63e-05	0.18	TGGGGTTTCC
RELA	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	101	110	+	13.7857	1.63e-05	0.18	TGGGGTTTCC
ELK3	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	13.2759	1.63e-05	0.0649	TCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	13.2759	1.63e-05	0.0649	TCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	13.2759	1.63e-05	0.0649	TCCGGAAGTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	32	45	-	12.2414	1.63e-05	0.0202	GACCACGCTCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	32	45	-	12.2414	1.63e-05	0.0202	GACCACGCTCCCTC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	46	56	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	51	61	+	12.9818	1.63e-05	0.00934	GAGCAGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	52	62	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	66	76	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	66	76	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	66	76	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	66	76	+	12.9818	1.63e-05	0.00934	GAGGCTGCGCG
ZBTB18	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	33	45	+	13.0429	1.63e-05	0.729	CACACAGATGTTA
ZBTB18	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	70	82	-	13.0429	1.63e-05	0.729	CACACAGATGTTA
RREB1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	33	52	-	8.18349	1.63e-05	0.0424	CCCCACACCACTCCCACTTC
RREB1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	46	65	-	8.18349	1.63e-05	0.0424	ACACCCCGCACACACCCACT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	48	67	+	8.18349	1.63e-05	0.0424	CCCCCCCGCCCCCCCCCCCT
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	+	13.1724	1.64e-05	0.0537	GCCCCGCCGGGCA
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	-	13.1724	1.64e-05	0.0537	GCCCCGCCGGGCA
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	39	54	-	12.937	1.64e-05	1	ATACATATTTAATTTA
ETV3	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	13.0563	1.64e-05	0.075	GCCGGATGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	13.0563	1.64e-05	0.075	GCCGGATGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	13.0563	1.64e-05	0.075	GCCGGATGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	13.0563	1.64e-05	0.075	GCCGGATGTG
TFEC	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	13.0732	1.64e-05	0.129	GCCACGTGAC
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	-	13.1818	1.64e-05	0.0893	TGCCCTGAGCCA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	38	56	+	11.8033	1.64e-05	0.0813	CGGTCGGGAGAGGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	38	56	+	11.8033	1.64e-05	0.0813	CGGTCGGGAGAGGGCGCGG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	21	31	-	13.0407	1.64e-05	0.011	CCCACACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	21	31	-	13.0407	1.64e-05	0.011	CCCACACCCCG
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	87	101	+	13	1.64e-05	0.793	CCCGCATACAACGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	73	84	-	13.0526	1.64e-05	0.0172	ACACCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	73	84	-	13.0526	1.64e-05	0.0172	ACACCGCCCCCC
T	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	90	105	+	11.4038	1.64e-05	1	TGGCACCAGGCTGTGA
T	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	90	105	+	11.4038	1.64e-05	1	TGGCACCAGGCTGTGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	-	13.2951	1.64e-05	0.0554	CCCCCTGCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	-	13.2951	1.64e-05	0.0554	CCCCCTGCGGGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	59	73	+	10.5345	1.64e-05	0.0287	CCCCGCCCCCGTTCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	59	73	+	10.5345	1.64e-05	0.0287	CCCCGCCCCCGTTCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	53	67	-	10.5345	1.64e-05	0.0287	CTGCGCCCACCCACT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	53	67	-	10.5345	1.64e-05	0.0287	CTGCGCCCACCCACT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	+	13.2364	1.64e-05	0.0548	TCCCTCGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	+	13.2364	1.64e-05	0.0548	TCCCTCGGGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	-	13.2364	1.64e-05	0.0548	TCCCTCGGGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	-	13.2364	1.64e-05	0.0548	CCCCTCCGGGCG
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	13.2273	1.64e-05	0.247	CACACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	13.2273	1.64e-05	0.247	CACACGTGCC
TFE3	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	12.6939	1.64e-05	0.0874	CTCACGTGAT
TFE3	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	12.6939	1.64e-05	0.0874	CTCACGTGAT
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	23	35	+	12.9836	1.64e-05	0.506	TAGTGATGCAATG
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	23	35	+	12.9836	1.64e-05	0.506	TAGTGATGCAATG
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	25	37	+	11.9138	1.64e-05	0.108	GAACCGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	78	90	-	11.9138	1.64e-05	0.108	GAACCGGAAGTCA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	78	90	-	11.9138	1.64e-05	0.108	GAACCGGAAGTCA
INSM1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	15	26	-	13.2959	1.64e-05	0.146	TGCCAGCGGTCG
INSM1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	89	100	+	13.2959	1.64e-05	0.146	TGCCAGCGGTCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	+	13.6364	1.64e-05	0.063	AGCCCCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	+	13.6364	1.64e-05	0.063	AGCCCCCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	+	13.6364	1.64e-05	0.063	AGCCCCCGGCG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	47	57	+	13.5574	1.64e-05	0.0357	CCGGAAGAGAC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	60	74	+	12.8909	1.64e-05	0.0974	CCCCCCCCGCCGCTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	26	42	-	8.67273	1.64e-05	0.0149	CTGGCCACACCCTCACT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	26	42	-	8.67273	1.64e-05	0.0149	CTGGCCACACCCTCACT
SP4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	32	48	-	8.67273	1.64e-05	0.0149	CTCGCCCCGCCCCAGAG
SP4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	67	83	+	8.67273	1.64e-05	0.0149	CTCGCCCCGCCCCAGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	1	21	-	12.2857	1.64e-05	0.00863	CGGGGGGGGGGGGGGGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	1	21	-	12.2857	1.64e-05	0.00863	CGGGGGGGGGGGGGGGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	12	32	-	12.2857	1.64e-05	0.00863	TGGAGAGGAAGTGAGGAAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	34	54	-	12.2857	1.64e-05	0.00863	GGAGAAGCGAGAAGTGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	34	54	-	12.2857	1.64e-05	0.00863	GGAGAAGCGAGAAGTGGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	56	76	-	12.2857	1.64e-05	0.00863	GGGGCCGGCGGGCGGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	77	97	-	12.2857	1.64e-05	0.00863	GAGGAAGGCGAGGAGGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	77	97	-	12.2857	1.64e-05	0.00863	GAGGAAGGCGAGGAGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	41	61	+	12.2857	1.64e-05	0.00863	GGGGCCGGGGCGAGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	41	61	+	12.2857	1.64e-05	0.00863	GGGGCCGGGGCGAGGAGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	41	61	+	12.2857	1.64e-05	0.00863	GGGGCCGGGGCGAGGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	41	61	+	12.2857	1.64e-05	0.00863	GGGGCCGGGGCGAGGAGGGAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	94	114	+	12.2857	1.64e-05	0.00863	CGGGGGGGGGGGGGGGGGGAA
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	19	31	-	13.8776	1.64e-05	0.12	GGCAGCTGCCATG
IRF1	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	51	71	-	12.2097	1.64e-05	0.134	CTGGAGTTTCTTTTTTTTATT
SP2	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	16	30	+	13.1207	1.64e-05	0.00599	CTCCCGCCTCGGCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	25	39	+	13.1207	1.64e-05	0.00599	GTTCCACCCCTTCCT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	30	44	+	13.1207	1.64e-05	0.00599	GTTCCACCCCTTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	33	47	+	13.1207	1.64e-05	0.00599	GCACCTCCCCCCGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	33	47	+	13.1207	1.64e-05	0.00599	GCACCTCCCCCCGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	25	39	-	13.1207	1.64e-05	0.00599	GCCCTGCCCATCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	27	41	-	13.1207	1.64e-05	0.00599	GCTCCACCCCCACGG
SP2	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	71	85	-	13.1207	1.64e-05	0.00599	GTTCCACCCCTTCCT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	76	90	-	13.1207	1.64e-05	0.00599	GTTCCACCCCTTCCT
SP2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	86	100	-	13.1207	1.64e-05	0.00599	CTCCCGCCTCGGCCT
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	86	100	-	13.1207	1.64e-05	0.00599	CTCCCGCCTCGGCCT
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	17	30	-	10.0732	1.64e-05	0.5	TCTGCCCACGGCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	17	30	-	10.0732	1.64e-05	0.5	TCTGCCCACGGCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	69	82	-	10.0732	1.64e-05	0.5	TCTGCCCACGGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	42	+	8.16514	1.64e-05	0.0424	ACCCCCCCCCCCCCGCCCCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	9	22	+	13	1.64e-05	0.0103	CCCCCGCCTTCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	9	22	+	13	1.64e-05	0.0103	CCCCCGCCTTCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	10	23	-	13	1.64e-05	0.0103	CCCCCGCCTTCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	18	31	-	13	1.64e-05	0.0103	CCTCCGCCGACGGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	39	52	+	13	1.64e-05	0.0103	CCTCCGCCGACGGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	63	76	-	13	1.64e-05	0.0103	CCTCCGCCGACGGC
EGR1	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	84	97	+	13	1.64e-05	0.0103	CCTCCGCCGACGGC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	92	105	+	13	1.64e-05	0.0103	CCCCCGCCTTCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	93	106	-	13	1.64e-05	0.0103	CCCCCGCCTTCTCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	+	13.1552	1.64e-05	0.0537	GGCCCCGGGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	-	13.1552	1.64e-05	0.0537	GGCCCCGGGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	-	13.1552	1.64e-05	0.0537	GGCCCCGGGGGGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	+	13.1552	1.64e-05	0.0537	GGCCCCGGGGGGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	-	13.1552	1.64e-05	0.0537	GGCCCCGGGGGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	19	28	-	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	19	28	-	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	44	53	+	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	44	53	+	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	57	66	+	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	57	66	+	13.2885	1.65e-05	0.105	ACCACATGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	62	71	+	13.2885	1.65e-05	0.105	ACCACATGAC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	57	67	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	57	67	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	57	67	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	57	67	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	94	104	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	94	104	+	12.9455	1.65e-05	0.00935	GCGTCTGCGCC
Nfe2l2	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	10	24	-	12.6515	1.65e-05	0.209	GGCGATGACTCGGCC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	61	75	+	12.6515	1.65e-05	0.209	GACAGTGACTCATCA
Myog	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	47	57	+	13.9184	1.65e-05	0.101	GGCAGCTGAGG
Myog	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	58	68	-	13.9184	1.65e-05	0.101	GGCAGCTGAGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	76	86	-	13.9184	1.65e-05	0.101	GGCAGCTGAGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	76	86	-	13.9184	1.65e-05	0.101	GGCAGCTGAGG
Stat6	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	10	24	-	13.6897	1.65e-05	0.4	CACTTCCAAGGAAGA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
ETV1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.9818	1.65e-05	0.0746	GCCGGAAGTT
RFX5	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	-	10.3103	1.65e-05	0.122	CGCGACCATGGTAACC
KLF14	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	55	68	+	12.2241	1.65e-05	0.0202	AAACCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	62	75	+	12.2241	1.65e-05	0.0202	TGCCCCGCCCCACT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	62	75	+	12.2241	1.65e-05	0.0202	TGCCCCGCCCCACT
KLF14	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	75	88	+	12.2241	1.65e-05	0.0202	TGCCCCGCCCCACT
KLF14	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	27	40	-	12.2241	1.65e-05	0.0202	TGCCCCGCCCCACT
KLF14	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	47	60	-	12.2241	1.65e-05	0.0202	AAACCCGCCCCCAC
HNF4G	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.1.0	8	22	+	13.1154	1.65e-05	0.302	GAAGGCCAAAGTGTA
Znf423	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	72	86	-	9.06742	1.65e-05	0.175	GGAACCTAGGCTGGA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	23	32	+	13.0275	1.65e-05	0.034	GACCCCCCAC
INSM1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	11	22	+	13.2755	1.65e-05	0.146	GGGCAGGGGGCT
INSM1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	93	104	-	13.2755	1.65e-05	0.146	GGGCAGGGGGCT
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	18	32	-	12.7922	1.65e-05	0.396	AGTTAAACTTTAACT
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	18	32	-	12.7922	1.65e-05	0.396	AGTTAAACTTTAACT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	5	18	+	13.7308	1.65e-05	0.143	TGTGGGTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	5	18	+	13.7308	1.65e-05	0.143	TGTGGGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	26	39	+	13.7308	1.65e-05	0.143	GGGTCATGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	26	39	+	13.7308	1.65e-05	0.143	GGGTCATGACTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	31	44	-	13.7308	1.65e-05	0.143	GGGTCATGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	97	110	-	13.7308	1.65e-05	0.143	TGTGGGTGAGTCAC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	23	37	+	11.5571	1.65e-05	0.097	CGCCCCCTCCTGCTC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	-	13.3115	1.65e-05	0.0626	CCCCCCCGGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	-	13.3115	1.65e-05	0.0626	TGCCTTGTGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	-	13.3115	1.65e-05	0.0626	TGCCTTGTGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	-	13.3115	1.65e-05	0.0626	TGCCTTGTGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	-	13.3115	1.65e-05	0.0626	TGCCTTGTGGGCA
Foxo1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	98	108	+	13.5172	1.65e-05	0.68	TGCTGTTTTCT
Foxo1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	7	17	-	13.5172	1.65e-05	0.68	TGCTGTTTTCT
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	53	67	-	11.1711	1.65e-05	0.145	TCGATGACTCCGCGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	53	67	-	11.1711	1.65e-05	0.145	TCGATGACTCCGCGC
TP63	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	96	113	-	4.44828	1.65e-05	0.559	GTCATGCTCCATCATGTG
TP63	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	96	113	-	4.44828	1.65e-05	0.559	GTCATGCTCCATCATGTG
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	-	10	1.65e-05	0.112	CGTCTCCATGACAATA
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	-	10	1.65e-05	0.112	CGTCTCCATGACAATA
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	-	10	1.65e-05	0.112	CGTCTCCATGACAATA
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	-	10	1.65e-05	0.112	CGTCTCCATGACAATA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	27	46	-	8.15596	1.65e-05	0.0424	CCCCGCCCCGCCCCCAGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	27	46	-	8.15596	1.65e-05	0.0424	CCCCGCCCCGCCCCCAGCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	27	46	-	8.15596	1.65e-05	0.0424	CCCCGCCCCGCCCCCAGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	27	46	-	8.15596	1.65e-05	0.0424	CCCCGCCCCGCCCCCAGCCC
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	-	12.5636	1.65e-05	0.107	AATTACGTAACG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	27	39	+	13.0143	1.65e-05	0.729	CACCCAGCTGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	27	39	+	13.0143	1.65e-05	0.729	CACCCAGCTGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	78	90	-	13.0143	1.65e-05	0.729	CACCCAGCTGTGG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	78	90	-	13.0143	1.65e-05	0.729	CACCCAGCTGTGG
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	44	54	+	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	103	113	-	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	103	113	-	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	103	113	-	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	103	113	-	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	104	114	-	14	1.65e-05	0.13	CAGTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	104	114	-	14	1.65e-05	0.13	CAGTGAGTCAG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	23	+	13.4898	1.65e-05	0.0933	GTCACGTGATT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	23	+	13.4898	1.65e-05	0.0933	GTCACGTGATT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	18	32	+	10.5172	1.65e-05	0.0287	GCCCACCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	18	32	+	10.5172	1.65e-05	0.0287	GCCCACCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	18	32	+	10.5172	1.65e-05	0.0287	GCCCACCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	27	41	+	10.5172	1.65e-05	0.0287	CTCCGCCCACTCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	27	41	+	10.5172	1.65e-05	0.0287	CTCCGCCCACTCGGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	83	97	-	10.5172	1.65e-05	0.0287	GCCCACCCCCGCCCC
SP4	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	31	47	-	8.65455	1.65e-05	0.0149	CAGGCTCCTCCCCTTTG
SP4	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	68	84	+	8.65455	1.65e-05	0.0149	CAGGCTCCTCCCCTTTG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	-	14.0426	1.65e-05	0.169	GCTGAGTCATA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	-	14.0426	1.65e-05	0.169	GCTGAGTCATA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.0.0	67	81	+	12.9636	1.65e-05	0.266	TGACAGAGAAAGCAA
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	96	113	-	10.2653	1.65e-05	0.863	GTCATGCTCCGTCATGTG
TP53	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	96	113	-	10.2653	1.65e-05	0.863	GTCATGCTCCGTCATGTG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	29	42	-	11.6721	1.65e-05	0.176	CACCCCCCACCGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	25	36	+	12.5636	1.65e-05	0.0817	CATCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	25	36	+	12.5636	1.65e-05	0.0817	CATCCGGAAGTT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	67	-	12.5636	1.65e-05	0.0817	GCGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	67	-	12.5636	1.65e-05	0.0817	GCGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	67	-	12.5636	1.65e-05	0.0817	GCGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	67	-	12.5636	1.65e-05	0.0817	GCGCCGGAAGTG
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	39	48	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	39	48	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	94	103	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	94	103	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	94	103	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	94	103	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	94	103	-	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	31	40	+	13.6854	1.65e-05	0.864	ATCAGGGTCA
RORA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	31	40	+	13.6854	1.65e-05	0.864	ATCAGGGTCA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	30	40	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	39	49	-	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	39	49	-	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	50	60	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	55	65	-	13.541	1.65e-05	0.0357	CCGGAAGCCCG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	67	77	+	13.541	1.65e-05	0.0357	CCGGAAGCCCG
SPI1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	65	78	+	7.96364	1.65e-05	0.127	GGAAACCGGAAGCG
Tcf12	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	23	33	-	13.9796	1.65e-05	0.129	AGCAGCTGCCC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	92	+	13.9796	1.65e-05	0.129	AGCAGCTGCCC
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	92	+	13.9796	1.65e-05	0.129	AGCAGCTGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	31	45	-	11.8033	1.65e-05	0.0344	GACCACGCGCCCTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	31	45	-	11.8033	1.65e-05	0.0344	GACCACGCGCCCTCA
ELF3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	22	34	+	11.8966	1.66e-05	0.108	AAGGAGGAAGTGA
ELF3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	81	93	-	11.8966	1.66e-05	0.108	AAGGAGGAAGTGA
Spz1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	55	65	-	13.1	1.66e-05	0.56	AGGGGAGCAGC
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	28	-	11.6667	1.66e-05	0.252	GGGTTCAAAGCTCA
Nr2f6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	28	-	11.6667	1.66e-05	0.252	GGGTTCAAAGCTCA
Nr2f6	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	87	100	+	11.6667	1.66e-05	0.252	GGGTTCAAAGCTCA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	28	-	13.1531	1.66e-05	0.281	AATCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	28	-	13.1531	1.66e-05	0.281	AATCACGTGGC
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	72	85	+	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	72	85	+	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	1	14	-	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	1	14	-	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	1	14	-	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	1	14	-	6.27273	1.66e-05	0.115	ATCTGACGTCAGCG
HOXD11	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	2	11	+	13.4648	1.66e-05	1	GTCATAAAAA
HOXD11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	77	86	+	13.4648	1.66e-05	1	GTCATAAAAA
HOXD11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	77	86	+	13.4648	1.66e-05	1	GTCATAAAAA
E2F6	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	5	15	-	13.7759	1.66e-05	0.0342	ACGCGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	43	53	-	13.7759	1.66e-05	0.0342	ACGCGGGAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	94	104	-	13.7759	1.66e-05	0.0342	ACGCGGGAGGG
E2F6	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	11	21	+	13.7759	1.66e-05	0.0342	ACGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	62	72	+	13.7759	1.66e-05	0.0342	ACGCGGGAGGG
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	48	62	+	11.1579	1.66e-05	0.145	GCTAAGAGTCAGCAC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	48	62	+	11.1579	1.66e-05	0.145	GCTAAGAGTCAGCAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	48	62	+	11.1579	1.66e-05	0.145	GCTAAGAGTCAGCAC
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	48	+	13.8571	1.66e-05	0.12	AGCAGCTGCGACT
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	76	+	13.8571	1.66e-05	0.12	AGCAGCTGCGACT
KLF14	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	20	33	+	12.2069	1.66e-05	0.0202	GGCTCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	51	64	+	12.2069	1.66e-05	0.0202	GGCTCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	51	64	+	12.2069	1.66e-05	0.0202	GGCTCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	76	89	-	12.2069	1.66e-05	0.0202	GGCCCCGCCTCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	76	89	-	12.2069	1.66e-05	0.0202	GGCCCCGCCTCTCT
KLF14	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	82	95	-	12.2069	1.66e-05	0.0202	GGCTCCGCCCCCGC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	10	24	+	11.5429	1.66e-05	0.097	CCCCCCCCCCAGTGT
EGR4	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	48	63	-	12.7455	1.66e-05	0.0367	CTCCACCCACGCCTGG
HSF4	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	79	91	+	13.1829	1.66e-05	1	TTCCAGAACAGTC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	13	1.66e-05	0.189	ATCACGTGTC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	13	1.66e-05	0.189	GACACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	13	1.66e-05	0.189	GACACGTGAT
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	103	+	8.51724	1.66e-05	0.213	AGGCACGTGTTT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	103	+	8.51724	1.66e-05	0.213	AGGCACGTGTTT
NR2C2	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	57	-	12.4	1.66e-05	0.0871	AGAGGGTAAAGGTCT
NR2C2	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	58	72	+	12.4	1.66e-05	0.0871	AGAGGGTAAAGGTCT
NR2C2	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	52	66	-	12.4	1.66e-05	0.0871	CGGGGGCGGAGGGAA
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	80	94	-	12.6364	1.66e-05	0.207	TCAGTTTCATGTTTT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	80	94	-	12.6364	1.66e-05	0.207	TCAGTTTCATGTTTT
RXRB	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	5	18	+	5.89091	1.66e-05	0.387	GGGGTTAAGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	2	14	-	13.2787	1.66e-05	0.0554	TGCCTCCAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.1.0	2	14	-	13.2787	1.66e-05	0.0554	TGCCTCCAAGGCA
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	48	+	11.2449	1.66e-05	0.0847	GGTGACGTCAGA
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	78	-	11.2449	1.66e-05	0.0847	GGTGACGTCAGA
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	80	94	+	13.5532	1.66e-05	0.311	ACCAATGATGTAATG
ETV4	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	20	29	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	21	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	21	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.9483	1.66e-05	0.0832	ACCGGAAGGA
ETV4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	45	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	48	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	44	53	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	44	53	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	49	58	+	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	56	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	66	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	76	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	79	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	79	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	79	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	79	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
ETV4	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	95	-	12.9483	1.66e-05	0.0832	ACCGGAAGCC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	7	24	+	-7.05263	1.66e-05	0.0287	GGGCAGGAGGAAGGAACG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	51	+	13.1034	1.66e-05	0.00601	CCCCCACCCACGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	51	+	13.1034	1.66e-05	0.00601	CCCCCACCCACGCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	51	+	13.1034	1.66e-05	0.00601	CCCCCACCCACGCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	51	+	13.1034	1.66e-05	0.00601	CCCCCACCCACGCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	37	51	+	13.1034	1.66e-05	0.00601	GTCCCGCTCCCCGTC
SP2	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	66	80	+	13.1034	1.66e-05	0.00601	TCCCCTCCTCCCTTC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	73	87	+	13.1034	1.66e-05	0.00601	CCACCGCCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	28	42	-	13.1034	1.66e-05	0.00601	CCACCGCCTCCCTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	28	42	-	13.1034	1.66e-05	0.00601	CCACCGCCTCCCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	64	78	-	13.1034	1.66e-05	0.00601	CCCCCACCCACGCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	76	90	-	13.1034	1.66e-05	0.00601	GCTCCTCCTCTGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	76	90	-	13.1034	1.66e-05	0.00601	GCTCCTCCTCTGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	76	90	-	13.1034	1.66e-05	0.00601	GCTCCTCCTCTGGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	76	90	-	13.1034	1.66e-05	0.00601	GCTCCTCCTCTGGCC
Myc	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	21	30	-	13.8	1.66e-05	0.232	CCACGTGTTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	22	42	-	12.2653	1.66e-05	0.00871	GGGAGAGCGGCGAGGGAGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	63	83	-	12.2653	1.66e-05	0.00871	GGGTGGGGGGGAAGGGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	28	48	+	12.2653	1.66e-05	0.00871	GGGGGCAGGAGACAAGGGGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	32	52	+	12.2653	1.66e-05	0.00871	GGGTGGGGGGGAAGGGGGAGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	50	64	-	10.5	1.66e-05	0.0287	CCGCGCCCCCGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	50	64	-	10.5	1.66e-05	0.0287	CCGCGCCCCCGCCTC
EGR3	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	99	113	-	10.5	1.66e-05	0.0287	CCCCGCCTCCGCCGT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	25	36	-	13.2182	1.66e-05	0.0548	TGCCCTCAGCCG
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	-	13.3	1.66e-05	0.196	TGCACGTGAT
E2F4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	37	47	-	13.8966	1.67e-05	0.0419	CGGCGGGAGCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	48	57	+	13.6531	1.67e-05	0.00928	GCCACTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	58	67	-	13.6531	1.67e-05	0.00928	GCCACTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	58	67	-	13.6531	1.67e-05	0.00928	GCCACTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	58	67	-	13.6531	1.67e-05	0.00928	GCCACTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	58	67	-	13.6531	1.67e-05	0.00928	GCCACTCCCT
E2F7	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	70	83	+	1.85246	1.67e-05	1	TCCTCCCGCCACAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	54	71	-	-7.07895	1.67e-05	0.0287	GGAGGAGGGGGAGGAGAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	54	71	-	-7.07895	1.67e-05	0.0287	GGAGGAGGGGGAGGAGAC
TBX20	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	94	104	+	13.1364	1.67e-05	0.921	GCGGTGTGAAG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	13.2364	1.67e-05	0.0833	GCCGGAAATG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	13.2364	1.67e-05	0.0833	GCCGGAAATG
ERG	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	13.2364	1.67e-05	0.0833	GCCGGAAATG
ERG	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	13.2364	1.67e-05	0.0833	GCCGGAAATG
ERG	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	13.2364	1.67e-05	0.0833	GCCGGAAATG
Hes1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	1	10	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	6	15	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	6	15	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	10	19	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	4	13	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	4	13	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	4	13	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	4	13	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	13	22	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	8	17	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	10	19	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	10	19	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	29	38	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	22	31	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	22	31	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	34	43	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	34	43	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	34	43	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	34	43	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	34	43	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	28	37	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	28	37	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	40	49	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	43	52	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	43	52	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	43	52	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	43	52	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	48	57	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	58	67	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	66	75	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	61	70	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	61	70	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	61	70	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	61	70	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	84	93	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	77	86	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	96	105	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	96	105	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	98	107	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	100	109	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	100	109	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	100	109	+	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	93	102	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	100	109	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Hes1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	105	114	-	10.9021	1.67e-05	0.0721	CGCACGCGCG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	11	25	+	11.7869	1.67e-05	0.0345	GGCCCCGCCCCGCCG
EGR1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	22	35	-	12.9808	1.67e-05	0.0104	ACCCCTCCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	71	+	12.9808	1.67e-05	0.0104	ACCCCTCCCCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	71	+	12.9808	1.67e-05	0.0104	ACCCCTCCCCCATC
EGR1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	80	93	+	12.9808	1.67e-05	0.0104	ACCCCTCCGCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	98	+	12.9808	1.67e-05	0.0104	CCCCCACCCTCTCG
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	+	13.2787	1.67e-05	0.0626	CGCCCTGCAGGCG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	-	13.2787	1.67e-05	0.0626	CGCCCTGCAGGCG
Stat6	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	45	59	-	13.6724	1.67e-05	0.4	CGTTTCCATAGAAAC
Stat6	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	56	70	+	13.6724	1.67e-05	0.4	CGTTTCCATAGAAAC
Stat4	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	92	105	+	13.569	1.67e-05	0.173	TTTCTGGGAACGTG
ZIC3	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	23	37	+	11.5286	1.67e-05	0.097	CCCCTCCTGCCGCGG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	43	57	+	11.5286	1.67e-05	0.097	TGCCTCCCGCTTTGC
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	26	35	+	13.1818	1.67e-05	1	GAAGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	78	87	-	13.1818	1.67e-05	1	GAAGTGTGAA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	57	74	+	12.3415	1.67e-05	0.0737	CAACCTGTGATTGGCTCC
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	57	74	+	12.3415	1.67e-05	0.0737	CAACCTGTGATTGGCTCC
NFYA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	57	74	+	12.3415	1.67e-05	0.0737	CAACCTGTGATTGGCTCC
NFYA	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	41	58	-	12.3415	1.67e-05	0.0737	CAACCTGTGATTGGCTCC
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	+	9.97143	1.67e-05	0.112	TATTGTCATGGAGACG
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	+	9.97143	1.67e-05	0.112	TATTGTCATGGAGACG
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	+	9.97143	1.67e-05	0.112	TATTGTCATGGAGACG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	+	9.97143	1.67e-05	0.112	TATTGTCATGGAGACG
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	26	36	+	12.9273	1.67e-05	0.00936	GCGTGTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	63	73	-	12.9273	1.67e-05	0.00936	GCGTGTGCGCG
RARA	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	52	69	+	-2.71212	1.67e-05	1	GCGGTCAGAGGGTAAAGG
RARA	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	46	63	-	-2.71212	1.67e-05	1	GCGGTCAGAGGGTAAAGG
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	56	68	-	12.97	1.67e-05	1	GTGATGCTAATTA
ELF4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	25	36	+	12.4262	1.67e-05	0.073	GAGGCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	90	-	12.4262	1.67e-05	0.073	GAGGCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	90	-	12.4262	1.67e-05	0.073	GAGGCGGAAGTG
ELF4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	99	110	+	12.4262	1.67e-05	0.073	GAGGCGGAAGTG
TCF4	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	21	-	13.6327	1.67e-05	0.353	CACACCTGTC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	57	66	+	13.6327	1.67e-05	0.353	TGCACCTGCT
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	57	66	+	13.6327	1.67e-05	0.353	TGCACCTGCT
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	77	-	13.6327	1.67e-05	0.353	TGCACCTGCT
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	77	-	13.6327	1.67e-05	0.353	TGCACCTGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	+	13.0714	1.67e-05	0.0857	CGCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	+	13.0714	1.67e-05	0.0857	CGCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	+	13.0714	1.67e-05	0.0857	CGCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	+	13.0714	1.67e-05	0.0857	CGCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	+	13.0714	1.67e-05	0.0857	CGCCCGAGGCCA
SMAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	28	37	-	12.5636	1.67e-05	1	TGACTAGACA
SMAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	28	37	-	12.5636	1.67e-05	1	TGACTAGACA
SMAD3	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	59	68	+	12.5636	1.67e-05	1	TGACTAGACA
SMAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	75	84	+	12.5636	1.67e-05	1	TGACTAGACA
SMAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	75	84	+	12.5636	1.67e-05	1	TGACTAGACA
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	25	38	-	12.1897	1.67e-05	0.0202	AACCACGCCCAGCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	25	38	-	12.1897	1.67e-05	0.0202	AACCACGCCCAGCT
ELK4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	43	53	+	13.6364	1.67e-05	0.0402	GAGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	72	-	13.6364	1.67e-05	0.0402	GAGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	72	-	13.6364	1.67e-05	0.0402	GAGCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	89	99	+	13.6364	1.67e-05	0.0402	GAGCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	89	99	+	13.6364	1.67e-05	0.0402	GAGCTTCCGGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	7	23	-	8.61818	1.67e-05	0.0149	CCCGCTCCGCCCCCTGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	23	39	-	8.61818	1.67e-05	0.0149	CACGCCACCCCCATCCT
REL	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	71	80	+	13.0202	1.67e-05	0.229	GGGACATTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	79	88	+	13.0202	1.67e-05	0.229	GGGACATTCC
REL	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	35	44	-	13.0202	1.67e-05	0.229	GGGACATTCC
GCM1	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	100	110	+	13.2449	1.67e-05	0.531	GATGCGGGCCC
SP8	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	23	+	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	26	+	13.0395	1.67e-05	0.0172	CCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	26	+	13.0395	1.67e-05	0.0172	CCCCCGCCCCTC
SP8	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	24	35	-	13.0395	1.67e-05	0.0172	ACCACTCCCCTC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	30	41	-	13.0395	1.67e-05	0.0172	CCCCCTCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	61	+	13.0395	1.67e-05	0.0172	CCCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	55	66	-	13.0395	1.67e-05	0.0172	CCCCCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	55	66	-	13.0395	1.67e-05	0.0172	CCCCCTCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	80	91	+	13.0395	1.67e-05	0.0172	ACCACTCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	92	+	13.0395	1.67e-05	0.0172	CCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	92	+	13.0395	1.67e-05	0.0172	CCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	92	103	-	13.0395	1.67e-05	0.0172	CCCACACCCACA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	10	24	-	12.3857	1.67e-05	0.0871	CGGGGTGAAGGGGTG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	10	24	-	12.3857	1.67e-05	0.0871	CGGGGTGAAGGGGTG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	+	14.0213	1.67e-05	0.169	GGTGACTCACT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	9	19	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	9	19	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	20	+	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	12	22	+	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	13	23	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	17	27	-	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	28	38	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	31	41	+	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
SP1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	22	32	-	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	22	32	-	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	34	44	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	35	45	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	35	45	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	30	40	-	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	34	44	-	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	41	51	-	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	68	78	+	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
SP1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	81	+	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	62	72	-	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	72	82	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	85	+	13.5192	1.67e-05	0.00696	GCCCCGCCCAG
SP1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	70	80	-	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	83	93	+	13.5192	1.67e-05	0.00696	CTCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	96	106	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	96	106	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	96	106	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	96	106	+	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	92	102	-	13.5192	1.67e-05	0.00696	ACCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	103	113	+	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	103	113	+	13.5192	1.67e-05	0.00696	CCCCCTCCTCT
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	11	25	+	10.4828	1.67e-05	0.0287	CCCCGCCCCCCCTCG
EGR3	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	28	42	-	10.4828	1.67e-05	0.0287	GCCCGCCCGCGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	31	45	-	10.4828	1.67e-05	0.0287	CCCCGCCCCCCCTCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	64	78	-	10.4828	1.67e-05	0.0287	ACACGCCCCCTCGCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	64	78	-	10.4828	1.67e-05	0.0287	ACACGCCCCCTCGCG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	64	78	-	10.4828	1.67e-05	0.0287	ACACGCCCCCTCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	64	78	-	10.4828	1.67e-05	0.0287	ACACGCCCCCTCGCG
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	22	40	+	12.9032	1.67e-05	0.671	TGCCCTCATGTGACATGAT
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	23	41	-	12.9032	1.67e-05	0.671	TGCCCTCATGTGACATGAT
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	7	20	+	9.54082	1.67e-05	0.365	CGGCAAGAGGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	7	20	+	9.54082	1.67e-05	0.365	CGGCAAGAGGCCAA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	34	47	-	13.4545	1.67e-05	0.029	GGCCCCTGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	34	47	-	13.4545	1.67e-05	0.029	GGCCCCTGGGCCTT
Zfx	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	68	81	+	13.4545	1.67e-05	0.029	GGCCCCTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	72	85	-	13.4545	1.67e-05	0.029	GGGAGTGCGGCCTC
HLF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	39	50	+	13.2373	1.67e-05	1	CATTACACAATC
HLF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	39	50	+	13.2373	1.67e-05	1	CATTACACAATC
HLF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	29	40	-	13.2373	1.67e-05	1	CATTACACAATC
HLF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	29	40	-	13.2373	1.67e-05	1	CATTACACAATC
HLF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	46	57	-	13.2373	1.67e-05	1	CCTTATATAACC
HLF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	46	57	-	13.2373	1.67e-05	1	CCTTATATAACC
HLF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	46	57	-	13.2373	1.67e-05	1	CCTTATATAACC
HLF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	46	57	-	13.2373	1.67e-05	1	CCTTATATAACC
HLF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	46	57	-	13.2373	1.67e-05	1	CCTTATATAACC
HLF	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	58	69	+	13.2373	1.67e-05	1	CCTTATATAACC
JUN	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	93	105	-	13.5306	1.68e-05	0.301	AGTGTGAGGTCAT
Creb5	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	74	+	12.5273	1.68e-05	0.107	TGTGACGTCATG
Creb5	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	79	+	12.5273	1.68e-05	0.107	TGTGACGTCATG
Creb5	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	47	-	12.5273	1.68e-05	0.107	TGTGACGTCATG
Creb5	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	52	-	12.5273	1.68e-05	0.107	TGTGACGTCATG
RFX4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	-	12.6364	1.68e-05	0.121	CGTCGCCATGGCGCCA
RFX4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	+	12.6364	1.68e-05	0.121	CGTCGCCATGGCGCCA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	12	21	+	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	12	21	+	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	26	35	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	26	35	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	26	35	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	37	46	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	38	47	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	38	47	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	49	58	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	49	58	-	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	85	+	12.0918	1.68e-05	0.131	CGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	85	+	12.0918	1.68e-05	0.131	CGTCACGTGA
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	10	25	-	12.7273	1.68e-05	0.0367	CCCCGCCCCGGCACGT
EGR4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	33	48	-	12.7273	1.68e-05	0.0367	CCCCGCCCCGGCACGT
EGR4	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	35	50	-	12.7273	1.68e-05	0.0367	CCAGGCCCACGCGCAG
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	67	82	+	12.7273	1.68e-05	0.0367	CCCCGCCCCGGCACGT
EGR4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	90	105	+	12.7273	1.68e-05	0.0367	CCCCGCCCCGGCACGT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	29	47	-	11.7541	1.68e-05	0.0813	CGGCCTCTGGGGGACGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	29	47	-	11.7541	1.68e-05	0.0813	CGGCCTCTGGGGGACGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	29	47	-	11.7541	1.68e-05	0.0813	CGGCCTCTGGGGGACGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	29	47	-	11.7541	1.68e-05	0.0813	CGGCCTCTGGGGGACGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	92	110	-	11.7541	1.68e-05	0.0813	TTGCCAGTATGGGGAAGTA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	92	110	-	11.7541	1.68e-05	0.0813	TTGCCAGTATGGGGAAGTA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	92	110	-	11.7541	1.68e-05	0.0813	TTGCCAGTATGGGGAAGTA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	92	110	-	11.7541	1.68e-05	0.0813	TTGCCAGTATGGGGAAGTA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	92	110	-	11.7541	1.68e-05	0.0813	TTGCCAGTATGGGGAAGTA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	4	13	-	13.2131	1.68e-05	0.144	GGGCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	4	13	-	13.2131	1.68e-05	0.144	GGGCACGTGC
SP2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	3	17	+	13.0862	1.68e-05	0.00601	CCTCCTCCCCTCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	10	24	+	13.0862	1.68e-05	0.00601	TCCCCTCCTCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	27	41	+	13.0862	1.68e-05	0.00601	GATCCGCCCCTCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	74	+	13.0862	1.68e-05	0.00601	CTCCCACCCCCAGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	74	+	13.0862	1.68e-05	0.00601	CTCCCACCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	73	87	+	13.0862	1.68e-05	0.00601	CTCCCACCTCCTTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	73	87	+	13.0862	1.68e-05	0.00601	CTCCCACCTCCTTGC
SP2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	74	88	+	13.0862	1.68e-05	0.00601	CCTCCTCCCCTCGCC
SP2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	74	88	+	13.0862	1.68e-05	0.00601	GCCCTGCCCCTCTCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	99	+	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	99	+	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	99	+	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	99	+	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	26	40	-	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	26	40	-	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	26	40	-	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	26	40	-	13.0862	1.68e-05	0.00601	CCTCCACCCCCTCCT
SP2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	27	41	-	13.0862	1.68e-05	0.00601	GCCCTGCCCCTCTCT
SP2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	27	41	-	13.0862	1.68e-05	0.00601	CCTCCTCCCCTCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	50	64	-	13.0862	1.68e-05	0.00601	TCCCCTCCTCTTCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	50	64	-	13.0862	1.68e-05	0.00601	TCCCCTCCTCTTCTC
SP2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	98	112	-	13.0862	1.68e-05	0.00601	CCTCCTCCCCTCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	100	114	-	13.0862	1.68e-05	0.00601	CCCCCTCCCCATTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	100	114	-	13.0862	1.68e-05	0.00601	CCCCCTCCCCATTCC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	38	52	-	12.8545	1.68e-05	0.0974	CCGCCCCCGCTGCGC
ZIC4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	63	77	+	12.8545	1.68e-05	0.0974	CCGCCCCCGCTGCGC
Bcl6	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	90	103	+	13.0806	1.68e-05	0.279	TTTCCTAAAAGGGT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	-	13.2909	1.68e-05	0.0408	CGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	-	13.2909	1.68e-05	0.0408	CGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	-	13.2909	1.68e-05	0.0408	CGCCTGGGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	+	13.2909	1.68e-05	0.0408	CGCCTGGGGCG
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	24	40	+	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	24	40	+	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	24	40	+	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	24	40	+	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	26	42	-	8.6	1.68e-05	0.0149	CTGGCCACACCCTCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	26	42	-	8.6	1.68e-05	0.0149	CTGGCCACACCCTCACC
SP4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	29	45	-	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	49	65	+	8.6	1.68e-05	0.0149	CTCCCCCCGCCCCTTTC
SP4	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	50	66	-	8.6	1.68e-05	0.0149	CTCCCCCCGCCCCTTTC
SP4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	70	86	+	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
SP4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	75	91	-	8.6	1.68e-05	0.0149	CACGCCACGCCCCGGAA
NFE2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	30	40	-	12.0408	1.68e-05	0.184	AGTGAGTCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	31	41	-	12.0408	1.68e-05	0.184	AGTGAGTCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	66	76	+	12.0408	1.68e-05	0.184	AGTGAGTCATG
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	12	26	+	13.4231	1.68e-05	0.0907	CCGCGGGCCAATCGC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	12	26	+	13.4231	1.68e-05	0.0907	CCGCGGGCCAATCGC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	12	26	+	13.4231	1.68e-05	0.0907	CCGCGGGCCAATCGC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	1	15	-	13.4231	1.68e-05	0.0907	GGGGAAGCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	1	15	-	13.4231	1.68e-05	0.0907	GGGGAAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	1	15	-	13.4231	1.68e-05	0.0907	GGGGAAGCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	1	15	-	13.4231	1.68e-05	0.0907	GGGGAAGCCAATCAG
NFYB	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	89	103	-	13.4231	1.68e-05	0.0907	CCGCGGGCCAATCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	1	14	+	12.1724	1.68e-05	0.0202	TTCCACGCCCCTAC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	5	18	+	12.1724	1.68e-05	0.0202	CCCCCCGCCCCCTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	36	49	+	12.1724	1.68e-05	0.0202	GCACCCGCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	36	49	+	12.1724	1.68e-05	0.0202	GCACCCGCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	36	49	+	12.1724	1.68e-05	0.0202	GCACCCGCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	36	49	+	12.1724	1.68e-05	0.0202	GCACCCGCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	59	72	-	12.1724	1.68e-05	0.0202	TACGACGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	59	72	-	12.1724	1.68e-05	0.0202	TACGACGCCCACCT
Sox3	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	27	36	-	13.5	1.68e-05	0.659	CTTTTGTTCT
HOXA10	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	79	89	-	12.1509	1.68e-05	1	GGCAATAAACA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	88	108	-	12.2449	1.68e-05	0.0088	GGAAGCCGAGGGAAGGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	22	42	+	12.2449	1.68e-05	0.0088	AAAGGAGGAGCCTAAAGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	22	42	+	12.2449	1.68e-05	0.0088	AAAGGAGGAGCCTAAAGAAGG
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	12	21	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	12	21	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	13	22	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	22	31	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	22	31	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	22	31	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	18	27	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	28	37	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	35	44	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	35	44	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	31	40	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	31	40	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	48	57	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	40	49	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	40	49	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	40	49	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	57	66	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	57	66	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	59	68	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	58	67	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	74	83	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	75	84	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	88	97	+	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	84	93	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	93	102	-	13	1.68e-05	0.034	CCCCCCCCCG
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	94	103	-	13	1.68e-05	0.034	CCCCCCCCCG
REST	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	55	75	+	8.78571	1.68e-05	0.204	CGCAGCGCCCAGGCCCGCGCC
SPIC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	51	64	+	13.0282	1.68e-05	0.153	TAAATAGGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	51	64	+	13.0282	1.68e-05	0.153	TAAATAGGGAAGTC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	34	44	+	13.3939	1.68e-05	0.0428	GGCTCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	34	44	+	13.3939	1.68e-05	0.0428	GGCTCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	50	60	+	13.3939	1.68e-05	0.0428	AGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	50	60	+	13.3939	1.68e-05	0.0428	AGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	50	60	+	13.3939	1.68e-05	0.0428	AGCCCCACCCC
Klf1	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	55	65	+	13.3939	1.68e-05	0.0428	AGCCCCACCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	104	114	+	13.3939	1.68e-05	0.0428	GGCTCCACCCA
Klf1	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	1	11	-	13.3939	1.68e-05	0.0428	GGCTCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	50	60	-	13.3939	1.68e-05	0.0428	AGCCCCACCCC
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	49	58	-	12.6129	1.68e-05	1	GCTAGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	49	58	-	12.6129	1.68e-05	1	GCTAGTTAAC
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	54	63	+	12.6129	1.68e-05	1	GCTAGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	54	63	+	12.6129	1.68e-05	1	GCTAGTTAAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	5	15	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	5	15	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	5	15	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	5	15	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	5	15	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	27	37	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	27	37	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	27	37	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	27	37	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	43	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	73	83	+	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	29	39	-	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	32	42	-	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	72	82	-	13.1552	1.68e-05	0.0118	GCCACGCCCCG
KLF16	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	78	88	-	13.1552	1.68e-05	0.0118	GCCACGCCCCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	45	62	-	-7.17105	1.68e-05	0.0289	GGAGAGAAAAAAGGAAGA
EGR3	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	38	52	-	10.4655	1.68e-05	0.0288	ACCCGCCCGCGCCCC
Dmbx1	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	57	73	-	13.4211	1.68e-05	1	GGAAGAGGATTATTGCT
EBF1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	37	-	12.459	1.68e-05	0.365	CTTCCCCTGGGGCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	25	37	+	12.0909	1.69e-05	0.224	TGGGGAAATCCCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	25	37	-	12.0909	1.69e-05	0.224	TGGGATTTCCCCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	90	+	12.0909	1.69e-05	0.224	TGGGATTTCCCCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	90	-	12.0909	1.69e-05	0.224	TGGGGAAATCCCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	4	17	+	12.9615	1.69e-05	0.0104	GCTCCGCCTACACA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	15	28	-	12.9615	1.69e-05	0.0104	GCCCCTCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	15	28	-	12.9615	1.69e-05	0.0104	CCGCCGCCCATTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	15	28	-	12.9615	1.69e-05	0.0104	GCCCCTCCTCCTGC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	53	66	+	12.9615	1.69e-05	0.0104	CTCCCTCCTCCTCT
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	41	54	-	12.9615	1.69e-05	0.0104	CTCCCTCCTCCTCT
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	61	74	+	12.9615	1.69e-05	0.0104	CTCCCTCCTCCTCT
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	49	62	-	12.9615	1.69e-05	0.0104	CTCCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	85	98	+	12.9615	1.69e-05	0.0104	CCGCCGCCCATTCC
E2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	36	47	+	13.2623	1.69e-05	0.362	CTCGGCGCCAAA
E2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	36	47	+	13.2623	1.69e-05	0.362	CTCGGCGCCAAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	46	56	-	13.5714	1.69e-05	0.219	TCTTCCTAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	46	56	-	13.5714	1.69e-05	0.219	TCTTCCTAGAA
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	65	-	12.9655	1.69e-05	0.835	TTTATGGTAATTAA
SCRT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	24	36	+	11.0164	1.69e-05	0.673	TCTCAACAAGTGT
SCRT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	24	36	+	11.0164	1.69e-05	0.673	TCTCAACAAGTGT
SCRT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	84	96	-	11.0164	1.69e-05	0.673	TCTCAACAAGTGT
SCRT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	84	96	-	11.0164	1.69e-05	0.673	TCTCAACAAGTGT
Tcf7	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	86	97	-	12.2903	1.69e-05	1	GGACATCAAAGT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	27	40	-	7.89091	1.69e-05	0.127	CAAAACAGGAAGGA
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	27	40	-	7.89091	1.69e-05	0.127	CAAAACAGGAAGGA
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	55	68	+	7.89091	1.69e-05	0.127	CAAAACAGGAAGGA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	55	68	+	7.89091	1.69e-05	0.127	CAAAACAGGAAGGA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	35	49	-	12.9848	1.69e-05	0.0641	GCCTCGCGGGAACGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	35	49	-	12.9848	1.69e-05	0.0641	GCCTCGCGGGAACGG
CLOCK	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	13.6667	1.69e-05	0.585	ACCACGTGTC
CLOCK	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	13.6667	1.69e-05	0.585	ACCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	12.9483	1.69e-05	0.188	GTCACGTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	12.9483	1.69e-05	0.188	GTCACGTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	12.9483	1.69e-05	0.188	GTCACGTGAG
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	12.9483	1.69e-05	0.188	GTCACGTGAG
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	12.9483	1.69e-05	0.188	GTCACGTGAG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	-	13.5818	1.69e-05	0.063	CGCCCCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	-	13.5818	1.69e-05	0.063	CGCCCCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	-	13.5818	1.69e-05	0.063	GGCCTGAGGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	13	23	+	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	16	26	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	16	26	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	24	34	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	24	34	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	24	34	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	24	34	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	26	36	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	40	50	+	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	40	50	+	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	33	43	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	33	43	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	33	43	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	33	43	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	45	55	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	39	49	-	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	39	49	-	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	39	49	-	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	39	49	-	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	66	76	+	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	60	70	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	72	82	+	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	81	91	-	12.9091	1.69e-05	0.00936	ACGCACGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	92	102	-	12.9091	1.69e-05	0.00936	GCGCCGGCCCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	+	13.051	1.69e-05	0.0857	GGCCCCAGGGCG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	13.6207	1.69e-05	0.16	GCCACGTGCT
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	13.6207	1.69e-05	0.16	GCCACGTGCT
HEY2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	13.6207	1.69e-05	0.16	GCCACGTGCT
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	13.6207	1.69e-05	0.16	GCCACGTGCT
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	13.6207	1.69e-05	0.16	GGCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	13.6207	1.69e-05	0.16	GGCACGTGGC
CTCF	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	92	110	+	11.7377	1.69e-05	0.0813	TAGACACCAGCTGGCAGTG
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	35	47	-	12.2381	1.69e-05	0.377	CCTGGGCACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	35	47	-	12.2381	1.69e-05	0.377	CCTGGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	55	67	-	12.2381	1.69e-05	0.377	CCTGGGCACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	55	67	-	12.2381	1.69e-05	0.377	CCTGGGCACGTGA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	49	63	-	13.3521	1.69e-05	0.341	AAAAAGAAAAAAAAG
PLAG1	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	39	52	+	9.66327	1.69e-05	0.0605	GAGTCGGTCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	28	41	-	9.66327	1.69e-05	0.0605	GAGTCGGTCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.1.0	28	41	-	9.66327	1.69e-05	0.0605	GAGTCGGTCGGGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	63	76	-	9.66327	1.69e-05	0.0605	GAGTCGGTCGGGGG
USF1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	34	44	-	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	98	108	-	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	7	17	+	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	7	17	+	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	7	17	+	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	7	17	+	13.4694	1.69e-05	0.0933	GGCATGTGATC
USF1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	71	81	+	13.4694	1.69e-05	0.0933	GGCATGTGATC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	28	40	+	12.0758	1.69e-05	0.224	GGGGACTTTCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	30	42	-	12.0758	1.69e-05	0.224	GGGGACTTTCCCC
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
ELK1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.9787	1.69e-05	0.0497	GCCGGAAGCA
RUNX1	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	7	17	+	12.9483	1.69e-05	0.215	GGCTGTGGGTT
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	68	82	-	12.9273	1.69e-05	0.266	TGAAAGTGAAGGTCA
Zfx	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	16	29	+	13.4394	1.69e-05	0.0293	CACCCCCAGGCCTC
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.1.0	66	79	-	7.87273	1.69e-05	0.127	GAAATGAAGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.0.0	66	79	-	7.87273	1.69e-05	0.127	GAAATGAAGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	59	-	12.3934	1.69e-05	0.073	TAGGCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	59	-	12.3934	1.69e-05	0.073	TAGGCGGAAGTG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	11	-	13.3966	1.69e-05	0.0992	TGCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	11	-	13.3966	1.69e-05	0.0992	TGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	11	-	13.3966	1.69e-05	0.0992	TGCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	58	+	13.3966	1.69e-05	0.0992	TGCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	58	+	13.3966	1.69e-05	0.0992	TGCAGCTGCG
NRL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	33	43	-	11.9808	1.69e-05	0.67	TTAATGCTGAC
NRL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	33	43	-	11.9808	1.69e-05	0.67	TTAATGCTGAC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	30	45	+	12.7091	1.69e-05	0.0367	GCCCTCCCCCGCGTTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	30	45	+	12.7091	1.69e-05	0.0367	GCCCTCCCCCGCGTTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	30	45	+	12.7091	1.69e-05	0.0367	GCCCTCCCCCGCGTTC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	30	44	-	11.9672	1.69e-05	0.291	ATGACAAAGCATGAC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	30	44	-	11.9672	1.69e-05	0.291	ATGACAAAGCATGAC
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	30	44	-	11.9672	1.69e-05	0.291	ATGACAAAGCATGAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	97	111	-	11.9672	1.69e-05	0.291	GTGAGTCAGCCATAA
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	97	111	-	11.9672	1.69e-05	0.291	GTGAGTCAGCCATAA
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	97	111	-	11.9672	1.69e-05	0.291	GTGAGTCAGCCATAA
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	97	111	-	11.9672	1.69e-05	0.291	GTGAGTCAGCCATAA
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	34	48	+	11.9672	1.69e-05	0.291	ATGACAAAGCATGAC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	+	11.1273	1.69e-05	0.398	ACTAATATTAGC
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	+	11.1273	1.69e-05	0.398	ACTAATATTAGC
Nkx2-5(var.2)	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	59	69	-	13.5455	1.69e-05	0.721	GGCCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	76	86	+	13.5455	1.69e-05	0.721	GGCCACTCCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	49	63	+	13.069	1.69e-05	0.00606	TGCCCTCCTCCTCCT
SP2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	63	77	+	13.069	1.69e-05	0.00606	CTCCCTCCCCGCCCG
SP2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	38	52	-	13.069	1.69e-05	0.00606	CTCCCTCCCCGCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	75	85	+	13.0163	1.69e-05	0.0114	GCCACGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	98	108	+	13.0163	1.69e-05	0.0114	CACACACCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	98	108	+	13.0163	1.69e-05	0.0114	CACACACCCAC
SP3	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	7	17	-	13.0163	1.69e-05	0.0114	CACACACCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	47	57	-	13.0163	1.69e-05	0.0114	CACACACCCAC
INSM1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	23	34	+	13.2347	1.7e-05	0.146	TGGAAGGGGGAA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	81	92	-	13.2347	1.7e-05	0.146	TGGAAGGGGGAA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	81	92	-	13.2347	1.7e-05	0.146	TGGAAGGGGGAA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	81	92	-	13.2347	1.7e-05	0.146	TGGAAGGGGGAA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	81	92	-	13.2347	1.7e-05	0.146	TGGAAGGGGGAA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	66	80	+	13.1864	1.7e-05	0.469	CAGGTAAAAATAGCT
MNX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	15	24	+	11.3134	1.7e-05	1	GATAATTAAA
MNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	15	24	+	11.3134	1.7e-05	1	GATAATTAAA
MNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	15	24	+	11.3134	1.7e-05	1	GATAATTAAA
MNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	15	24	+	11.3134	1.7e-05	1	GATAATTAAA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	15	26	+	12.9355	1.7e-05	0.281	CCGCCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	15	26	+	12.9355	1.7e-05	0.281	CCGCCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	15	26	+	12.9355	1.7e-05	0.281	CCGCCCACCGCC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	15	26	+	12.9355	1.7e-05	0.281	CCGCCCACCGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	5	19	-	10.4483	1.7e-05	0.0289	CCCCTCCCCCGCCTC
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	20	34	-	10.4483	1.7e-05	0.0289	CCCCGCCTCCACACC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	+	13.2459	1.7e-05	0.0554	AGCCGCCGGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	-	13.2459	1.7e-05	0.0554	AGCCGCCGGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	-	13.2459	1.7e-05	0.0554	AGCCGCCGGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	-	13.2459	1.7e-05	0.0554	AGCCGCCGGGGGA
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	6	19	+	11.6066	1.7e-05	0.176	GCCCCCCCGCCTTC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	6	19	+	11.6066	1.7e-05	0.176	GCCCCCCCGCCTTC
GLIS2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	13	26	-	11.6066	1.7e-05	0.176	GCCCCCCCGCCTTC
GLIS2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	89	102	+	11.6066	1.7e-05	0.176	GCCCCCCCGCCTTC
GLIS2	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	96	109	-	11.6066	1.7e-05	0.176	GCCCCCCCGCCTTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	14	24	+	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	31	41	+	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	31	41	+	13.5	1.7e-05	0.00702	GGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	24	34	-	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	24	34	-	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	39	49	+	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	45	55	+	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	45	55	+	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	66	76	-	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	66	76	-	13.5	1.7e-05	0.00702	TCTCCACCCCC
SP1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	74	84	-	13.5	1.7e-05	0.00702	TCTCCACCCCC
RXRG	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	65	78	+	6.76596	1.7e-05	0.363	TGGGTGAGAGGTTA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	64	78	+	12.8288	1.7e-05	0.142	ATGGGTGAGAGGTTA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	31	41	-	13.5636	1.7e-05	0.0408	GGGCTTCCGGG
Myod1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	36	+	13.8367	1.7e-05	0.12	GGCAGCTGCTGTG
Myod1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	79	91	-	13.8367	1.7e-05	0.12	GGCAGCTGCTGTG
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	79	91	-	13.8367	1.7e-05	0.12	GGCAGCTGCTGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	13.3621	1.7e-05	0.076	ACCGGAAGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	13.3621	1.7e-05	0.076	ACCGGAAGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	13.3621	1.7e-05	0.076	ACCGGAAGCT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	13.3621	1.7e-05	0.076	ACCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.4038	1.7e-05	0.0872	GCCGGAAGTC
ETS1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	13.3621	1.7e-05	0.076	ACCGGAAGCT
ETS1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	13.3621	1.7e-05	0.076	ACCGGAAGCT
FEV	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.4038	1.7e-05	0.0872	GCCGGAAGTC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	-	13.1455	1.7e-05	0.0893	CGCCTGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	-	13.1455	1.7e-05	0.0893	CGCCTGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	-	13.1455	1.7e-05	0.0893	CGCCTGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	-	13.1455	1.7e-05	0.0893	CGCCTGGGGGCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	32	+	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	32	+	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	32	+	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	32	+	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	54	65	-	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	54	65	-	13.0132	1.7e-05	0.0173	ACCCCGCCCAGC
NFYB	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	40	54	+	13.4038	1.7e-05	0.0911	CACTGAGCCAATCAT
SP4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	3	19	-	8.56364	1.7e-05	0.0151	CCGACTCCGCCCCCAGA
SP4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	96	112	+	8.56364	1.7e-05	0.0151	CCGACTCCGCCCCCAGA
ELF1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	47	58	+	12.5091	1.7e-05	0.0829	AGGCCGGAAGTA
ELF1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	68	-	12.5091	1.7e-05	0.0829	AGGCCGGAAGTA
SNAI2	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	17	25	-	12.8605	1.7e-05	0.433	AGCAGGTGT
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	27	+	13.6404	1.7e-05	0.181	GACACGTGG
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	28	+	13.6404	1.7e-05	0.181	GACACGTGG
Creb3l2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	49	+	13.6404	1.7e-05	0.181	GACACGTGG
Creb3l2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	66	74	-	13.6404	1.7e-05	0.181	GACACGTGG
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	100	108	-	13.6404	1.7e-05	0.181	GACACGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	13	+	12.8605	1.7e-05	0.433	AGCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	13	+	12.8605	1.7e-05	0.433	AGCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	54	+	12.8605	1.7e-05	0.433	AGCAGGTGT
SNAI2	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	98	+	12.8605	1.7e-05	0.433	AGCAGGTGT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	10	20	-	14.0727	1.7e-05	0.136	CAGTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	10	20	-	14.0727	1.7e-05	0.136	CAGTGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	32	42	+	14.0727	1.7e-05	0.136	CAGTGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	79	89	-	14.0727	1.7e-05	0.136	CAGTGACTCAC
FOSL2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	95	105	+	14.0727	1.7e-05	0.136	CAGTGACTCAC
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	33	47	+	13.5106	1.7e-05	0.311	AGGCATGACGTCACA
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	38	52	+	13.5106	1.7e-05	0.311	AGGCATGACGTCACA
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	77	-	13.5106	1.7e-05	0.311	AGGCATGACGTCACA
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	82	-	13.5106	1.7e-05	0.311	AGGCATGACGTCACA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	5	25	-	12.2245	1.7e-05	0.0088	GGAGCCGCGGCGGGAGAGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	38	58	-	12.2245	1.7e-05	0.0088	GGAGGAAAAAAAAAAAAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	38	58	-	12.2245	1.7e-05	0.0088	GGAGGAAAAAAAAAAAAGGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	40	60	-	12.2245	1.7e-05	0.0088	GAGGGAAGCAGAGGAGTTGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	50	70	-	12.2245	1.7e-05	0.0088	CGGGGTGGGGTGGGGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	50	70	-	12.2245	1.7e-05	0.0088	CGGGGTGGGGTGGGGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	50	70	-	12.2245	1.7e-05	0.0088	CGGGGTGGGGTGGGGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	52	72	-	12.2245	1.7e-05	0.0088	GGAGGGAGGGGAGAGGAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	52	72	-	12.2245	1.7e-05	0.0088	GGAGGGAGGGGAGAGGAGGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	54	74	-	12.2245	1.7e-05	0.0088	GGGGGTTGGAAAAGGGAGAGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	54	74	-	12.2245	1.7e-05	0.0088	AGAGATGGGAGGGCGTGGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	90	110	-	12.2245	1.7e-05	0.0088	GGGGGCGCAGAGTGGAGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	5	25	+	12.2245	1.7e-05	0.0088	GGGGGCGCAGAGTGGAGGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	41	61	+	12.2245	1.7e-05	0.0088	AGAGATGGGAGGGCGTGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	52	72	+	12.2245	1.7e-05	0.0088	AAGAAAGGGAGGGGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	55	75	+	12.2245	1.7e-05	0.0088	GAGGGAAGCAGAGGAGTTGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	55	75	+	12.2245	1.7e-05	0.0088	GAGGGAAGCAGAGGAGTTGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	90	110	+	12.2245	1.7e-05	0.0088	GGAGCCGCGGCGGGAGAGGAA
RREB1	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	17	36	-	8.06422	1.7e-05	0.0432	CAACCCCTCTCCCCCCGCCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	51	71	-	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	51	71	-	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	15	35	+	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	15	35	+	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	15	35	+	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	15	35	+	8.7551	1.7e-05	0.204	GTCCCCACCCCGCCCAGCGCC
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	60	73	-	11.9839	1.7e-05	0.461	CCGAAAGCGGAAAC
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	60	73	-	11.9839	1.7e-05	0.461	CCGAAAGCGGAAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	-	12.7636	1.7e-05	0.702	ATTGCACAAC
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	-	12.7636	1.7e-05	0.702	ATTGCACAAC
CEBPE	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	-	12.7636	1.7e-05	0.702	ATTGCACAAC
CEBPE	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	+	12.7636	1.7e-05	0.702	ATGGCGCAAT
CEBPE	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	+	12.7636	1.7e-05	0.702	ATTGCACAAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	-	12.7636	1.7e-05	0.702	ATGGCGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	-	12.7636	1.7e-05	0.702	ATGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	-	12.7636	1.7e-05	0.702	ATGGCGCAAT
CEBPE	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	+	12.7636	1.7e-05	0.702	ATTGCACAAC
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	23	32	-	12.3871	1.7e-05	0.741	CACATTCCAG
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	23	32	-	12.3871	1.7e-05	0.741	CACATTCCAG
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	67	76	-	12.3871	1.7e-05	0.741	CACATTCCAG
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	88	97	-	12.3871	1.7e-05	0.741	CACATTCCAG
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	98	107	+	12.3871	1.7e-05	0.741	CACATTCCAG
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	98	107	+	12.3871	1.7e-05	0.741	CACATTCCAG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	36	46	+	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	38	48	+	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	45	55	+	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	43	53	-	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	51	61	-	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	62	72	+	12.4828	1.7e-05	0.0601	CCGCCCACGTC
EGR2	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	67	77	-	12.4828	1.7e-05	0.0601	CCGCCCACGTC
FOXB1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	65	-	13.1731	1.7e-05	1	TAAGTAAACAA
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	39	-	12.931	1.7e-05	0.859	ACCACCTGCT
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	90	-	12.931	1.7e-05	0.859	ACCACCTGCT
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	81	+	12.931	1.7e-05	0.859	ACCACCTGCT
ELF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	32	43	-	12.4909	1.7e-05	0.0829	GACCCGGAAGAG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	6	19	+	12.9423	1.7e-05	0.0104	CCCACTCCTCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	6	19	+	12.9423	1.7e-05	0.0104	CCCACTCCTCCACC
EGR1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	3	16	-	12.9423	1.7e-05	0.0104	ACTCCGCCCCCAGA
EGR1	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	27	40	-	12.9423	1.7e-05	0.0104	TCCCCGCTTCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	40	53	-	12.9423	1.7e-05	0.0104	CCCACTCCTCCACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	57	70	+	12.9423	1.7e-05	0.0104	TCCCCGCTTCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	62	75	+	12.9423	1.7e-05	0.0104	CCCACTCCTCCACC
EGR1	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	75	88	+	12.9423	1.7e-05	0.0104	TCCCCGCTTCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	112	+	12.9423	1.7e-05	0.0104	ACTCCGCCCCCAGA
EGR1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	96	109	-	12.9423	1.7e-05	0.0104	CCCACTCCTCCACC
SP3	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	20	+	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
SP3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	81	+	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
SP3	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	85	+	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
SP3	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	30	40	-	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
SP3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	34	44	-	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
SP3	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	41	51	-	13.0081	1.7e-05	0.0114	GCCCCGCCCAG
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	-	13.4286	1.7e-05	0.166	ACCAGCTGTT
SPIC	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	53	66	+	13.0141	1.7e-05	0.153	CATATGGGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	73	86	+	13.0141	1.7e-05	0.153	CATATGGGGAAGTC
SPIC	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	29	42	-	13.0141	1.7e-05	0.153	CATATGGGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	49	62	-	13.0141	1.7e-05	0.153	CATATGGGGAAGTC
ATF7	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	31	44	-	11.2571	1.71e-05	0.104	CCATGACATCATCC
DMRT3	WILDTYPE__mrna.noflip.NA__chr14:62203529..62203643,+__1020.1.0.0	28	38	+	12.918	1.71e-05	1	ACTGTATCAAG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	44	57	+	9.64286	1.71e-05	0.0605	GGGTGGATAGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	-	13.069	1.71e-05	0.0537	AGCCCCGAAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	-	13.069	1.71e-05	0.0537	AGCCCCGAAGGCC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	56	66	+	13.3091	1.71e-05	0.197	ATTCTAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	56	66	+	13.3091	1.71e-05	0.197	ATTCTAGGAAG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	13.2885	1.71e-05	0.0706	TCCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	13.2885	1.71e-05	0.0706	TCCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	13.2885	1.71e-05	0.0706	TCCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	13.2885	1.71e-05	0.0706	TCCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	13.2885	1.71e-05	0.0706	TCCGGAAGTG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	59	69	+	13.551	1.71e-05	0.219	TCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	59	69	+	13.551	1.71e-05	0.219	TCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	59	69	+	13.551	1.71e-05	0.219	TCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	59	69	+	13.551	1.71e-05	0.219	TCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	59	69	+	13.551	1.71e-05	0.219	TCTTCCCGGAA
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	79	92	-	11.8636	1.71e-05	0.253	CTGCCACATCACTG
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	67	+	13.44	1.71e-05	0.803	TGTTTACTTACC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	22	36	+	10.431	1.71e-05	0.029	GCCCGCCGACGCGCA
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
ETV1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.9455	1.71e-05	0.0746	GCCGGAAGCA
CREB3	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	13	26	+	12.6286	1.71e-05	0.206	CAGACACGTCACGC
ZIC1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	23	36	+	10.2766	1.71e-05	0.0959	CCCCTCCCGCCGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	67	80	+	10.2766	1.71e-05	0.0959	CACCGCCCGCCGAG
ZIC1	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	35	48	-	10.2766	1.71e-05	0.0959	CACCGCCCGCCGAG
ZIC1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	79	92	-	10.2766	1.71e-05	0.0959	CCCCTCCCGCCGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	16	30	-	12.3429	1.71e-05	0.088	GAGGGGGAGGGGGCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	60	74	-	12.3429	1.71e-05	0.088	GAGGGGGAGGGGGCG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	32	43	+	13.2	1.71e-05	0.217	GCCGACCACCAT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	32	43	+	13.2	1.71e-05	0.217	GCCGACCACCAT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	23	39	-	8.54545	1.71e-05	0.0151	TACGCCACCCCCATCCT
Sox11	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	-	-5.91429	1.71e-05	1	TACAATTTAATTGTC
Sox11	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	+	-5.91429	1.71e-05	1	TACAATTTAATTGTC
Sox11	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	+	-5.91429	1.71e-05	1	TACAATTTAATTGTC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	105	114	-	13.8293	1.71e-05	0.472	CTCACCCGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	105	114	-	13.8293	1.71e-05	0.472	CTCACCCGAC
Zfx	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	13	26	-	13.4242	1.71e-05	0.0294	CCATGCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	89	102	+	13.4242	1.71e-05	0.0294	CCATGCGGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	89	102	+	13.4242	1.71e-05	0.0294	CCATGCGGGGCCTC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	+	13.2295	1.71e-05	0.0554	GCCCCCCGGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	+	13.2295	1.71e-05	0.0554	GCCCCCCGGGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	+	13.2295	1.71e-05	0.0554	GGCCCGCGGGGGG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	-	13.2295	1.71e-05	0.0554	GCCCCCCGGGGCC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	+	13.2295	1.71e-05	0.0554	GCCCCCCGGGGCC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	-	13.2295	1.71e-05	0.0554	GCCCCCCGGGGCC
SP1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	5	15	+	13.4808	1.71e-05	0.00707	GCTCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	46	56	+	13.4808	1.71e-05	0.00707	GCTCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	59	69	-	13.4808	1.71e-05	0.00707	GCTCCTCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	100	110	-	13.4808	1.71e-05	0.00707	GCTCCTCCCTC
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	+	12.2258	1.71e-05	0.671	ACTATAATTAGC
FLI1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	13.3191	1.71e-05	0.0896	ACCGGAAACT
FLI1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	13.3191	1.71e-05	0.0896	ACCGGAAACT
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	36	46	+	12.8909	1.71e-05	0.00947	CCGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	36	46	+	12.8909	1.71e-05	0.00947	CCGCAGGCGCA
ELF3	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	60	72	+	11.8103	1.71e-05	0.111	CATCCGGAAGTGC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	2	13	+	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	2	13	+	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	2	13	+	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	2	13	+	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	18	29	+	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	73	84	-	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	73	84	-	11.1633	1.71e-05	0.0847	GCTGACGTCAGA
SP2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	14	28	+	13.0517	1.71e-05	0.00611	GCTCCGCCCCGCGTG
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	22	36	+	13.0517	1.71e-05	0.00611	CTCCTGCCCCCCTCC
SP2	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	58	72	+	13.0517	1.71e-05	0.00611	GCCCTTCCCCTTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	17	31	-	13.0517	1.71e-05	0.00611	GCACCGCCCCGCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	43	57	-	13.0517	1.71e-05	0.00611	GCCCTTCCCCTTCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	62	77	+	12.6909	1.71e-05	0.0368	CCCCGCCCCCGGAACG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	62	77	+	12.6909	1.71e-05	0.0368	CCCCGCCCCCGGAACG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	-	13.1818	1.71e-05	0.0548	AGCCCGGAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	-	13.1818	1.71e-05	0.0548	AGCCCGGAGGCG
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	3	17	+	12.8182	1.71e-05	0.0974	GCGCCCCTGCTGAGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	3	17	+	12.8182	1.71e-05	0.0974	GCGCCCCTGCTGAGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	41	55	+	12.8182	1.71e-05	0.0974	GCGCCCCTGCTGAGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	41	55	+	12.8182	1.71e-05	0.0974	GCGCCCCTGCTGAGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	60	74	-	12.8182	1.71e-05	0.0974	GCGCCCCTGCTGAGC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	28	38	+	13.9592	1.71e-05	0.132	TGGTGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	44	-	13.9592	1.71e-05	0.132	TGGTGAGTCAC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	+	13.2295	1.71e-05	0.0626	GGCCCCCTGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	+	13.2295	1.71e-05	0.0626	GGCCCCCTGGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	-	13.2295	1.71e-05	0.0626	ACCCCTGCGGGGA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	96	108	+	13.2295	1.71e-05	0.0626	GGCCCTCTGGGCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	62	78	+	12.551	1.71e-05	0.338	GGGTCATTCCAAGTTCA
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	+	13.0408	1.71e-05	0.0857	TCCCCGCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	+	13.0408	1.71e-05	0.0857	TCCCCGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	+	13.0408	1.71e-05	0.0857	TCCCCGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	-	13.0408	1.71e-05	0.0857	CGCCCCCCGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	-	13.0408	1.71e-05	0.0857	CGCCCCCCGGCA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	60	70	-	13.5246	1.71e-05	0.037	CCGGAAACGGC
TFAP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	-	13.6	1.71e-05	0.655	GACAGCTGTT
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	21	31	+	13.1224	1.71e-05	0.285	AAACACGTGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	10	18	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	10	18	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	14	22	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	21	29	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	21	29	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	23	31	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	23	31	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	36	44	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	36	44	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	37	45	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	33	41	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	60	68	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	52	60	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	60	68	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	74	82	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	74	82	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	86	94	+	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	79	87	-	11	1.72e-05	0.192	CCGCCCGCA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	90	98	-	11	1.72e-05	0.192	CCGCCCGCA
RREB1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	42	61	-	8.0367	1.72e-05	0.0432	CCACCACCCGCCACCGCCGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	49	+	8.0367	1.72e-05	0.0432	CCCCCCCCCCCCCCGCACGC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	54	73	+	8.0367	1.72e-05	0.0432	CCACCACCCGCCACCGCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	54	73	+	8.0367	1.72e-05	0.0432	CCACCACCCGCCACCGCCGC
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	22	35	+	10.9737	1.72e-05	0.557	CTGACAGCTGGCAC
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	22	35	+	10.9737	1.72e-05	0.557	CTGACAGCTGGCAC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	+	13.1273	1.72e-05	0.0893	AGCCCCGGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	-	13.1273	1.72e-05	0.0893	AGCCCCGGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	-	13.1273	1.72e-05	0.0893	AGCCCCGGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	-	13.1273	1.72e-05	0.0893	TGCCCACGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	-	13.1273	1.72e-05	0.0893	TGCCCACGGGCG
NFE2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	+	11.9388	1.72e-05	0.184	AATGAGTCATA
Rarb	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	88	103	-	1.60345	1.72e-05	0.742	TCAGGACAAGAGTCCA
CTCF	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	28	46	+	11.7049	1.72e-05	0.0813	CATCCAGTGGGGGTCAGCC
CTCF	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	25	43	-	11.7049	1.72e-05	0.0813	TTGCCGGGAGACGGCGCCC
CTCF	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	72	90	+	11.7049	1.72e-05	0.0813	TTGCCGGGAGACGGCGCCC
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	69	87	-	11.7049	1.72e-05	0.0813	CATCCAGTGGGGGTCAGCC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	69	87	-	11.7049	1.72e-05	0.0813	CATCCAGTGGGGGTCAGCC
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	20	34	-	12.9545	1.72e-05	0.0646	CACTCGCGAGATTGG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	81	95	+	12.9545	1.72e-05	0.0646	CACTCGCGAGATTGG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	14	27	+	13.6731	1.72e-05	0.148	CAGCGATGACTCAC
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	19	31	+	13.3966	1.72e-05	0.889	TACATTTTCATAT
Klf4	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	34	43	-	12.9694	1.72e-05	0.0121	TGGGCGTGGG
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	48	57	-	12.9694	1.72e-05	0.0121	AGGGAGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	58	67	+	12.9694	1.72e-05	0.0121	AGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	58	67	+	12.9694	1.72e-05	0.0121	AGGGAGTGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	58	67	+	12.9694	1.72e-05	0.0121	AGGGAGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	58	67	+	12.9694	1.72e-05	0.0121	AGGGAGTGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	72	81	+	12.9694	1.72e-05	0.0121	TGGGCGTGGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	13	27	-	10.4138	1.72e-05	0.0291	CCACCCCCCCGCGGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	24	40	-	8.52727	1.72e-05	0.0152	ACAACCACGCCCAGCTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	24	40	-	8.52727	1.72e-05	0.0152	ACAACCACGCCCAGCTC
SP8	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	1	12	-	13	1.72e-05	0.0174	GCAACACCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	2	13	-	13	1.72e-05	0.0174	GCCACGCCCCCG
SP8	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	30	41	-	13	1.72e-05	0.0174	GCCACGCCCCCG
SP8	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	60	71	-	13	1.72e-05	0.0174	GCCACGCCCCCG
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	62	71	+	13.1731	1.72e-05	0.108	GCCACATGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	94	103	+	13.1731	1.72e-05	0.108	GCCACATGAC
TFEB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	94	103	+	13.1731	1.72e-05	0.108	GCCACATGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	46	66	-	12.2041	1.72e-05	0.00889	GGGGCATGAGTAAAATGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	46	66	-	12.2041	1.72e-05	0.00889	GGGGCATGAGTAAAATGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	92	112	+	12.2041	1.72e-05	0.00889	GAGGGCGGGAAGAAGGAGGAG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	14	25	-	13.3182	1.72e-05	0.109	CCAGGTCCGCCC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	14	25	-	13.3182	1.72e-05	0.109	CCAGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	14	25	-	13.3182	1.72e-05	0.109	CCAGGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	14	25	-	13.3182	1.72e-05	0.109	CCAGGTCCGCCC
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	35	48	-	12.931	1.72e-05	0.835	GTTATGCAAATGCC
POU1F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	35	48	-	12.931	1.72e-05	0.835	GTTATGCAAATGCC
POU1F1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	35	48	-	12.931	1.72e-05	0.835	GTTATGCAAATGCC
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	35	48	-	12.931	1.72e-05	0.835	GTTATGCAAATGCC
POU1F1	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	67	80	+	12.931	1.72e-05	0.835	GTTATGCAAATGCC
ALX3	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.0693	1.72e-05	1	CCTAATTAGA
PAX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	19	35	-	9.92727	1.72e-05	0.484	GGATACGCATCATCACA
PAX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.0.0	19	35	-	9.92727	1.72e-05	0.484	GGATACGCATCATCACA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	80	92	+	7.26531	1.72e-05	0.233	TGGGAGTTCCCCA
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	60	73	+	10.2553	1.72e-05	0.0959	CCCCCCCTGCCGCT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	22	35	-	12.9231	1.72e-05	0.0105	ACCCCGCCCTCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	64	77	-	12.9231	1.72e-05	0.0105	CCTCCTCCCTCTCC
Spz1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	58	68	-	13.0818	1.72e-05	0.56	ACGGTAAGAGC
Spz1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	47	57	+	13.0818	1.72e-05	0.56	ACGGTAAGAGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	-	13.0517	1.72e-05	0.0537	AGCCCGTCGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	-	13.0517	1.72e-05	0.0537	CGCCCCTCGGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	+	13.0517	1.72e-05	0.0537	AGCCCGTCGGGCG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	+	14.0364	1.72e-05	0.14	GGTGAGTCACA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	-	14.0364	1.72e-05	0.14	GGTGAGTCACA
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.0	21	30	-	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	21	30	-	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	21	30	-	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.0.0	21	30	-	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	67	76	+	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	77	86	+	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	77	86	+	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	77	86	+	13.7449	1.72e-05	0.18	TGGACTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	77	86	+	13.7449	1.72e-05	0.18	TGGACTTTCC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	62	-	12.3607	1.72e-05	0.073	CCTCCGGAAGTG
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	48	60	+	12.93	1.73e-05	1	ATTATGTAGATTT
Pou2f3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	16	31	+	13.2561	1.73e-05	0.649	TAGTATGTAAATCTAA
Pou2f3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	16	31	+	13.2561	1.73e-05	0.649	TAGTATGTAAATCTAA
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	2	15	+	9.60204	1.73e-05	0.0605	GGGGCGGGAGGGGG
PLAG1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	13	26	+	9.60204	1.73e-05	0.0605	GGGGCGGGAGGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	19	32	+	9.60204	1.73e-05	0.0605	GGGGCGGGAGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	41	54	-	9.60204	1.73e-05	0.0605	GGGGCGGGAGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	89	102	-	9.60204	1.73e-05	0.0605	GGGGCGGGAGGGGG
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	8	18	+	13.4898	1.73e-05	0.672	GTTGCATAATT
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	8	18	+	13.4898	1.73e-05	0.672	GTTGCATAATT
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	31	41	+	13.4898	1.73e-05	0.672	GTTGCATAATT
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	31	41	+	13.4898	1.73e-05	0.672	GTTGCATAATT
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	+	11.1835	1.73e-05	0.623	TGACAGCCGTGA
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	+	11.1835	1.73e-05	0.623	TGACAGCCGTGA
HIC2	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	76	84	+	12.0909	1.73e-05	0.266	GTGCCCACG
HIC2	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	31	39	-	12.0909	1.73e-05	0.266	GTGCCCACG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	88	96	-	12.0909	1.73e-05	0.266	GTGCCCACG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	88	96	-	12.0909	1.73e-05	0.266	GTGCCCACG
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	49	63	+	12.9808	1.73e-05	0.426	GGGTCACCCGCACCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	49	63	+	12.9808	1.73e-05	0.426	GGGTCACCCGCACCC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	13.5909	1.73e-05	0.171	AGCACGTGAC
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	13.5909	1.73e-05	0.171	AGCACGTGAC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	10	23	-	13.4091	1.73e-05	0.0294	ACCACCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	41	54	-	13.4091	1.73e-05	0.0294	ACCACCCAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	41	54	-	13.4091	1.73e-05	0.0294	ACCACCCAGGCCTC
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	11	21	-	13.5577	1.73e-05	0.238	GAGCTGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	32	42	-	13.5577	1.73e-05	0.238	GAGCTGAGTCA
STAT3	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	9	19	-	13.5714	1.73e-05	0.178	GTTCTAGGAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	42	-	13.5714	1.73e-05	0.178	TTTCCAGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	68	-	13.5714	1.73e-05	0.178	TTTCCAGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	73	83	+	13.5714	1.73e-05	0.178	TTTCCAGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	73	83	+	13.5714	1.73e-05	0.178	TTTCCAGGAAG
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	77	87	-	12.6545	1.73e-05	1	GAAGTGTGAAA
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	26	36	+	12.6545	1.73e-05	1	GAAGTGTGAAA
Myb	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	3	12	+	13.9016	1.73e-05	0.823	TCAACTGCCT
Myb	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	103	112	-	13.9016	1.73e-05	0.823	TCAACTGCCT
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.0.0	45	59	-	13.0385	1.73e-05	0.304	AGTGAACAAAGTGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.1.0	45	59	-	13.0385	1.73e-05	0.304	AGTGAACAAAGTGCA
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	31	46	+	7.87273	1.73e-05	0.256	TGGGTCAAAGGGCAGC
OLIG3	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	12.9138	1.73e-05	1	GCCATATGCT
OLIG3	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	12.9138	1.73e-05	1	GCCATATGCT
Klf12	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	30	44	-	11.7049	1.73e-05	0.0355	GGCCCCGCCCCCGGT
Klf12	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	48	62	+	11.7049	1.73e-05	0.0355	GGCCCCGCCCCCGGT
Klf12	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	53	67	-	11.7049	1.73e-05	0.0355	GGCCCCGCCCCCGGT
Klf12	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	71	85	+	11.7049	1.73e-05	0.0355	GGCCCCGCCCCCGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	+	13.2131	1.73e-05	0.0554	CGCCCGCAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	+	13.2131	1.73e-05	0.0554	CGCCCGCAGGGGG
EHF	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	20	-	12.918	1.73e-05	0.0968	CTACCGGAAGTA
EHF	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	72	83	+	12.918	1.73e-05	0.0968	CTACCGGAAGTA
EGR3	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	27	41	+	10.3966	1.73e-05	0.0292	CCCCGCCCCCTCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	57	71	+	10.3966	1.73e-05	0.0292	CCCCGCCCCCTCCCC
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	100	111	-	13.0337	1.73e-05	0.581	AAATTGATGACT
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	100	111	-	13.0337	1.73e-05	0.581	AAATTGATGACT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	34	51	+	-7.39474	1.73e-05	0.0297	GGAAGGAGGGGAAGTGAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	19	37	-	11.6885	1.73e-05	0.0813	GCTCCTCCAGAGGGAGGGA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	19	37	-	11.6885	1.73e-05	0.0813	GCTCCTCCAGAGGGAGGGA
SP2	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	7	21	+	13.0345	1.73e-05	0.00616	GCCCCTCTCCCCGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	48	62	+	13.0345	1.73e-05	0.00616	GCCCCTCTCCCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	82	96	+	13.0345	1.73e-05	0.00616	CTTCCTCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	82	96	+	13.0345	1.73e-05	0.00616	CTTCCTCCTCCTCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	53	67	-	13.0345	1.73e-05	0.00616	GCCCCTCTCCCCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	56	70	-	13.0345	1.73e-05	0.00616	GCCCCACCCTTTGTC
SP2	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	94	108	-	13.0345	1.73e-05	0.00616	GCCCCTCTCCCCGCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	36	51	+	12.6727	1.73e-05	0.0368	CCACCCCCACGCTCAG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	26	41	-	12.6727	1.73e-05	0.0368	CCACCCCCACGCTCAG
Bcl6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	61	+	13.0323	1.73e-05	0.279	CTTCCTGGAAGAGA
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	61	+	13.0323	1.73e-05	0.279	CTTCCTGGAAGAGA
Bcl6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	61	+	13.0323	1.73e-05	0.279	CTTCCTGGAAGAGA
Bcl6	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	54	67	-	13.0323	1.73e-05	0.279	CTTCCTGGAAGAGA
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	28	45	-	9.05172	1.73e-05	0.137	AAGACACACCCACCAGTG
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	28	45	-	9.05172	1.73e-05	0.137	AAGACACACCCACCAGTG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	28	45	-	9.05172	1.73e-05	0.137	AAGACACACCCACCAGTG
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	46	63	-	9.05172	1.73e-05	0.137	AAGACACACCCACCAGTG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	46	63	-	9.05172	1.73e-05	0.137	AAGACACACCCACCAGTG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	67	78	-	8.03448	1.73e-05	0.189	GGTCACGTGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	67	78	-	8.03448	1.73e-05	0.189	GGTCACGTGCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	16	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	34	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	34	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	27	37	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	37	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	37	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	47	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	63	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	70	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	75	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	75	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	75	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	75	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	90	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	90	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	90	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	90	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	113	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	104	114	+	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	1	11	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	2	12	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	2	12	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	2	12	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	2	12	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	29	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	29	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	29	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	19	29	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	19	29	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	25	35	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	25	35	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	37	47	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	42	52	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	45	55	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	51	61	-	13.0862	1.73e-05	0.0118	GCCCCGCCCTC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	42	54	-	7.22449	1.73e-05	0.233	TGGGGGTCTCCCT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	9	23	-	13.3654	1.73e-05	0.0911	GCGTGGTCCAATCGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	9	23	-	13.3654	1.73e-05	0.0911	GCGTGGTCCAATCGG
NFYB	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	55	69	+	13.3654	1.73e-05	0.0911	GCGTGGTCCAATCGG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	-	13.2131	1.74e-05	0.063	CCCCCTCCGGGCG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	65	75	+	13.5273	1.74e-05	0.0414	CCGCTTCCGCG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	65	75	+	13.5273	1.74e-05	0.0414	CCGCTTCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	62	75	+	10.234	1.74e-05	0.0959	CCCACCCCGCTGCT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	62	75	+	10.234	1.74e-05	0.0959	CCCACCCCGCTGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	62	75	+	10.234	1.74e-05	0.0959	CCCACCCCGCTGCT
ZIC1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	26	39	-	10.234	1.74e-05	0.0959	CGCCCCCCGCGGGC
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	60	69	-	12.7303	1.74e-05	0.93	GATCTGGAAT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	60	69	-	12.7303	1.74e-05	0.93	GATCTGGAAT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	80	89	-	12.7303	1.74e-05	0.93	GATCTGGAAT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	80	89	-	12.7303	1.74e-05	0.93	GATCTGGAAT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	22	32	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	22	32	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	22	32	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	22	32	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	26	36	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	26	36	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	26	36	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	26	36	-	13	1.74e-05	0.0115	GCCCCACCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	55	65	-	13	1.74e-05	0.0115	GCCCCACCCCT
NR2C2	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	8	22	+	12.3143	1.74e-05	0.0883	CCGGGGCAGGGGGCT
NR2C2	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	93	107	-	12.3143	1.74e-05	0.0883	CCGGGGCAGGGGGCT
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	9	25	+	10.5	1.74e-05	0.882	GGGGACCCCCTGTGCCT
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	9	25	+	10.5	1.74e-05	0.882	GGGGACCCCCTGTGCCT
JUNB	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	19	29	-	13.9388	1.74e-05	0.132	CAGTGAGTCAT
JUNB	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	31	41	-	13.9388	1.74e-05	0.132	CAGTGAGTCAT
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	47	59	-	12.8361	1.74e-05	0.506	TGATGACGCCATC
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	47	59	-	12.8361	1.74e-05	0.506	TGATGACGCCATC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	35	47	+	13.1475	1.74e-05	0.359	CTGTCTTCCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.0.0	35	47	+	13.1475	1.74e-05	0.359	CTGTCTTCCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	73	85	-	13.1475	1.74e-05	0.359	CCGTCTGACACCG
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	73	85	-	13.1475	1.74e-05	0.359	CCGTCTGACACCG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	97	108	-	13.1636	1.74e-05	0.0548	TGCCTCCAGGCC
SP1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	3	13	+	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	11	21	-	13.4423	1.74e-05	0.0071	ACTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	11	21	-	13.4423	1.74e-05	0.0071	ACTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	16	26	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	16	26	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	16	26	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	16	26	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	23	33	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	23	33	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	26	36	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	26	36	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	28	38	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	31	41	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	32	42	-	13.4423	1.74e-05	0.0071	ACTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	33	43	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	33	43	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	43	53	+	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	43	53	+	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	73	83	+	13.4423	1.74e-05	0.0071	ACTCCTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	74	84	+	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	102	112	-	13.4423	1.74e-05	0.0071	CCTCCTCCCCT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	9	25	+	8.49091	1.74e-05	0.0153	TAGGCCCCGGCCCTCAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	9	25	+	8.49091	1.74e-05	0.0153	TAGGCCCCGGCCCTCAT
SP4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	90	106	-	8.49091	1.74e-05	0.0153	TAGGCCCCGGCCCTCAT
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	45	56	+	12.3443	1.74e-05	0.073	AAACCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	45	56	+	12.3443	1.74e-05	0.073	AAACCGGAACTG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	30	+	8.96629	1.74e-05	0.175	CGCCCCCAGGGCGGA
Znf423	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	14	28	-	8.96629	1.74e-05	0.175	GCCCCCTAGGAGGCA
EGR1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	24	37	+	12.9038	1.74e-05	0.0106	TCCCTTCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	35	48	-	12.9038	1.74e-05	0.0106	TCGCCGCCGACTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	35	48	-	12.9038	1.74e-05	0.0106	TCGCCGCCGACTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	78	91	-	12.9038	1.74e-05	0.0106	TCCCTTCCCCCGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	47	67	-	12.1837	1.74e-05	0.00893	AGGGGCGGGGCATCAGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	53	73	-	12.1837	1.74e-05	0.00893	GAGGGTAAAAGAAAAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	70	90	-	12.1837	1.74e-05	0.00893	GAAGGGGGAACGAGGGAGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	70	90	-	12.1837	1.74e-05	0.00893	GAAGGGGGAACGAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	70	90	-	12.1837	1.74e-05	0.00893	GAAGGGGGAACGAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	70	90	-	12.1837	1.74e-05	0.00893	GAAGGGGGAACGAGGGAGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	21	41	+	12.1837	1.74e-05	0.00893	GAAGAAAGACGCGGAGAGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	25	45	+	12.1837	1.74e-05	0.00893	GAAGGGGGAACGAGGGAGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	48	68	+	12.1837	1.74e-05	0.00893	AGGGGCGGGGCATCAGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	49	69	+	12.1837	1.74e-05	0.00893	GAAGAAAGACGCGGAGAGAGG
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	24	37	-	9.93902	1.74e-05	0.5	GGTGCAGCCGGCCC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	24	37	-	9.93902	1.74e-05	0.5	GGTGCAGCCGGCCC
TP63	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	96	113	+	4.22414	1.74e-05	0.559	CACATGATGGAGCATGAC
TP63	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	96	113	+	4.22414	1.74e-05	0.559	CACATGATGGAGCATGAC
EGR2	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	10	20	-	12.431	1.74e-05	0.0612	AGGCCCACGCT
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	6	19	-	9.38776	1.74e-05	0.365	TGGCACCGCGTCAG
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	96	109	+	9.38776	1.74e-05	0.365	TGGCACCGCGTCAG
USF2	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	27	37	-	13.551	1.74e-05	0.0783	CTCATGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	45	55	-	13.551	1.74e-05	0.0783	CTCATGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	45	55	-	13.551	1.74e-05	0.0783	CTCATGTGACA
USF2	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	7	17	+	13.551	1.74e-05	0.0783	CTCATGTGACA
USF2	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	26	36	+	13.551	1.74e-05	0.0783	CTCATGTGACA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	2	12	-	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	10	20	-	13.7069	1.74e-05	0.0349	AGGAGGGAAAC
E2F6	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	48	58	-	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	51	61	-	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	59	69	-	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	71	81	-	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	34	44	+	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	46	56	+	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	54	64	+	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	57	67	+	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	57	67	+	13.7069	1.74e-05	0.0349	AGGAGGGAGAG
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	80	96	-	12.5204	1.74e-05	0.338	AGGGCAGGGTGAGGTCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	90	106	-	12.5204	1.74e-05	0.338	GGGTCAGCGGGGAGCCA
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	57	67	-	13.8448	1.74e-05	0.0419	GGGCGCGAAGC
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	57	67	-	13.8448	1.74e-05	0.0419	GGGCGCGAAGC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	87	97	-	13.8448	1.74e-05	0.0419	GAGCGGGAAAG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	9	22	-	9.58163	1.74e-05	0.0605	GGGGCCGTGGGGGC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	9	22	-	9.58163	1.74e-05	0.0605	GGGGCCGTGGGGGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	9	22	-	9.58163	1.74e-05	0.0605	GGGGCCGTGGGGGC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	9	22	-	9.58163	1.74e-05	0.0605	GGGGCCGTGGGGGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	67	76	-	12.945	1.74e-05	0.035	ACACCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	67	76	-	12.945	1.74e-05	0.035	ACACCCCCAC
NRF1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	27	37	-	12.8727	1.74e-05	0.00959	CCGCCCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	54	64	+	12.8727	1.74e-05	0.00959	CCGCCCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	51	61	-	12.8727	1.74e-05	0.00959	CCGCCCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	78	88	+	12.8727	1.74e-05	0.00959	CCGCCCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	95	105	+	12.8727	1.74e-05	0.00959	ACGCGGGCGCA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	95	109	-	11.4286	1.74e-05	0.097	GACGCCCTGCAGTGG
MAFF	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	10	27	+	13.1333	1.74e-05	0.965	AGTTACTCAGCAAATATT
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	53	64	+	13.4494	1.74e-05	0.99	AAACCATCTGCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	53	64	+	13.4494	1.74e-05	0.99	AAACCATCTGCT
INSM1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	37	48	+	13.1633	1.74e-05	0.146	GGGCTGGGGGTG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	+	13.1967	1.75e-05	0.0554	GCCCCGCCGGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	-	13.1967	1.75e-05	0.0554	GCCCCGCCGGGCA
Sox11	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	77	91	-	-6.08571	1.75e-05	1	AACACTTGCATTATC
Sox11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	77	91	-	-6.08571	1.75e-05	1	AACACTTGCATTATC
Sox11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	77	91	-	-6.08571	1.75e-05	1	AACACTTGCATTATC
Sox11	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	77	91	-	-6.08571	1.75e-05	1	AACACTTGCATTATC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	59	70	+	12.9016	1.75e-05	0.0968	TAGCAGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	59	70	+	12.9016	1.75e-05	0.0968	TAGCAGGAAGTG
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	60	74	-	13.4681	1.75e-05	0.311	GAGGGTGAGGTCAGA
MEF2B	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	-	11.0909	1.75e-05	0.4	GCTAATTATAGT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	27	40	-	12.0862	1.75e-05	0.0209	CACTCCGCCCCCTC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	-	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	-	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	-	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	-	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	+	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	+	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	+	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	+	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	+	12.878	1.75e-05	0.129	GTCACATGAT
TFEC	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	+	12.878	1.75e-05	0.129	GTCACATGAT
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	27	41	-	12.9242	1.75e-05	0.0653	ATCTCGTGAGACTTA
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	18	31	+	11.541	1.75e-05	0.176	CACCCCCTGCAGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	82	93	-	13.2115	1.75e-05	0.113	CGACATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	82	93	-	13.2115	1.75e-05	0.113	CGACATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	82	93	-	13.2115	1.75e-05	0.113	CGACATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	82	93	-	13.2115	1.75e-05	0.113	CGACATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	82	93	-	13.2115	1.75e-05	0.113	CGACATGGCGGC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	24	43	-	7.98165	1.75e-05	0.0432	CCACCCCCCACCGCCCCGCG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	76	95	-	7.98165	1.75e-05	0.0432	CACACAAACACACCCAGAGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	76	95	-	7.98165	1.75e-05	0.0432	CACACAAACACACCCAGAGA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	20	30	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	46	56	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	46	56	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	64	74	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	79	89	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	79	89	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	79	89	+	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	11	21	-	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	26	36	-	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	43	53	-	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	100	110	-	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	100	110	-	13.3182	1.75e-05	0.0428	TGCCCCGCCCT
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	7	15	-	14.1636	1.75e-05	0.267	ACACACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	7	15	-	14.1636	1.75e-05	0.267	ACACACCTG
SP2	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	73	+	13.0172	1.75e-05	0.00621	TCCCCGCCCCGGTTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	8	22	-	13.0172	1.75e-05	0.00621	CTCCCTCCCTCTGCG
SP2	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	42	56	-	13.0172	1.75e-05	0.00621	TCCCCGCCCCGGTTC
FOSL1	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	-	13.9818	1.75e-05	0.14	AGTGACTCACA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	-	13.9818	1.75e-05	0.14	AGTGACTCACA
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	70	-	13.5	1.75e-05	0.569	AACAGCTGAT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	70	-	13.5	1.75e-05	0.569	AACAGCTGAT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	+	13.2727	1.75e-05	0.0419	CGCCTGCGGCC
SP4	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	52	68	-	8.47273	1.75e-05	0.0154	CAGAACCCGCCCCAAAC
SP4	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	80	96	+	8.47273	1.75e-05	0.0154	GTAGCCCCGGCCCCGCG
RFX4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	+	12.5606	1.75e-05	0.124	AGTCCCCATGGTGACA
RFX4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	-	12.5606	1.75e-05	0.124	AGTCCCCATGGTGACA
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	53	-	8.95506	1.75e-05	0.175	GGACCCCTGGCGGCC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	53	-	8.95506	1.75e-05	0.175	GGACCCCTGGCGGCC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	53	-	8.95506	1.75e-05	0.175	GGACCCCTGGCGGCC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	53	-	8.95506	1.75e-05	0.175	GGACCCCTGGCGGCC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	51	+	13.9184	1.75e-05	0.135	GGCAGCTGCGA
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	13.3793	1.75e-05	1	AACATATGCC
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	13.3793	1.75e-05	1	AACATATGCC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	59	76	-	13.3273	1.75e-05	0.915	CCAATCTGCGGCGACCAG
GATA1::TAL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	59	76	-	13.3273	1.75e-05	0.915	CCAATCTGCGGCGACCAG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	57	69	+	13.7959	1.75e-05	0.12	TGCACCTGCTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	57	69	+	13.7959	1.75e-05	0.12	TGCACCTGCTTCT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	89	+	13.7959	1.75e-05	0.12	GCCAGCTGCTGCA
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	89	+	13.7959	1.75e-05	0.12	GCCAGCTGCTGCA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	16	29	-	9.57143	1.75e-05	0.0605	GTGGCTGAGGGGGA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	+	13.1091	1.75e-05	0.0893	CGCCCCGAGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	-	13.1091	1.75e-05	0.0893	CGCCCCGAGGGA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	-	13.1091	1.75e-05	0.0893	CGCCCCGAGGGA
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	40	51	+	13	1.75e-05	1	GTATGGAAATTA
POU3F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	40	51	+	13	1.75e-05	1	GTATGGAAATTA
POU3F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	40	51	+	13	1.75e-05	1	GTATGGAAATTA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	43	58	-	12.6545	1.75e-05	0.0368	CCCCGCCCACCCTGAG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	43	58	-	12.6545	1.75e-05	0.0368	CCCCGCCCACCCTGAG
REST	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	31	51	-	8.68367	1.75e-05	0.204	CCCGGCGCGTGGGACAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	71	81	+	13.4754	1.75e-05	0.0372	CCGGAAGCAGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	71	81	+	13.4754	1.75e-05	0.0372	CCGGAAGCAGT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	71	81	+	13.4754	1.75e-05	0.0372	CCGGAAGCAGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	71	81	+	13.4754	1.75e-05	0.0372	CCGGAAGCAGT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	71	81	+	13.4754	1.75e-05	0.0372	CCGGAAGCAGT
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	47	60	+	12.6346	1.75e-05	0.446	CCTGACACGTCACA
XBP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	47	60	+	12.6346	1.75e-05	0.446	CCTGACACGTCACA
XBP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	47	60	+	12.6346	1.75e-05	0.446	CCTGACACGTCACA
XBP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	47	60	+	12.6346	1.75e-05	0.446	CCTGACACGTCACA
XBP1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	55	68	-	12.6346	1.75e-05	0.446	CCTGACACGTCACA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	22	36	-	12.7818	1.75e-05	0.0974	CCCCCCCCGCCGGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	22	36	-	12.7818	1.75e-05	0.0974	CCCCCCCCGCCGGCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	22	36	-	12.7818	1.75e-05	0.0974	CCCCCCCCGCCGGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	22	36	-	12.7818	1.75e-05	0.0974	CCCCCCCCGCCGGCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	72	86	+	12.7818	1.75e-05	0.0974	GAAGCCCCGCAGTGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	72	86	+	12.7818	1.75e-05	0.0974	GAAGCCCCGCAGTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	69	+	7.97248	1.75e-05	0.0432	CCCCCGCCCCCCCCCCCTGC
ELF3	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	66	78	+	11.7759	1.75e-05	0.112	CGCCCGGAAGTAG
ZIC3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	12	26	-	11.4143	1.75e-05	0.097	CCCCCCCCGCAGTAC
ZIC3	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	38	52	+	11.4143	1.75e-05	0.097	CGCCCCCTGCCGCCC
ZIC3	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	63	77	-	11.4143	1.75e-05	0.097	CGCCCCCTGCCGCCC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	89	103	+	11.4143	1.75e-05	0.097	CCCCCCCCGCAGTAC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	-	13.1803	1.75e-05	0.0554	CCCCCTCCGGGCG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	52	65	-	9.56122	1.75e-05	0.0605	GGGGCCATCAGGAG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	62	76	+	11.6721	1.75e-05	0.0358	CACCACACCCAGCTT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	96	110	-	11.6721	1.75e-05	0.0358	TACCACACCCCAAGC
ELF4	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	6	17	+	12.3115	1.76e-05	0.073	GAACAGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	16	27	+	12.3115	1.76e-05	0.073	GAACAGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	57	-	12.3115	1.76e-05	0.073	GAACAGGAAGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	58	69	+	12.3115	1.76e-05	0.073	GAACAGGAAGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	99	-	12.3115	1.76e-05	0.073	GAACAGGAAGTG
Stat5a::Stat5b	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	56	66	+	13.4694	1.76e-05	0.219	TCTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	49	59	-	13.4694	1.76e-05	0.219	TCTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	49	59	-	13.4694	1.76e-05	0.219	TCTTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	49	59	-	13.4694	1.76e-05	0.219	TCTTCCAGGAA
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	28	43	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	28	43	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	28	43	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	28	43	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	28	43	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	72	87	+	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	69	84	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	69	84	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	69	84	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
RFX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	69	84	-	10.1552	1.76e-05	0.122	TGTCTCCATGGCAGCG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	15	26	+	13.1714	1.76e-05	0.217	CGGGACCACCAA
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	27	40	-	11.1571	1.76e-05	0.105	GGCTTACGTCATCA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	27	40	-	11.1571	1.76e-05	0.105	GGCTTACGTCATCA
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	30	39	+	10.8601	1.76e-05	0.0721	CGCACGCGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	35	-	10.8601	1.76e-05	0.0721	CGCACGCGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	35	-	10.8601	1.76e-05	0.0721	CGCACGCGGC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	35	55	+	8.67347	1.76e-05	0.204	GACAGGACAGCGGCCAGGCCC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	35	55	+	8.67347	1.76e-05	0.204	GACAGGACAGCGGCCAGGCCC
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	40	59	+	7.9633	1.76e-05	0.0432	CCCCACTCCCCCCACCCCAC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	+	11.8367	1.76e-05	0.184	CGTGACTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	+	11.8367	1.76e-05	0.184	CGTGACTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	-	11.8367	1.76e-05	0.184	CGTGACTCACG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	-	11.8367	1.76e-05	0.184	CGTGACTCACG
GLIS2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	36	49	-	11.5246	1.76e-05	0.176	CGCCCCCCGCGCCC
GLIS2	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	72	85	+	11.5246	1.76e-05	0.176	CGCCCCCCGCGCCC
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	23	36	+	10.8947	1.76e-05	0.557	TCGCCAGCTGTCGC
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	27	40	-	10.8947	1.76e-05	0.557	TCGCCAGCTGTCGC
BCL6B	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	16	32	-	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	22	38	-	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	22	38	-	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	22	38	-	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	47	63	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	47	63	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	77	93	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	83	99	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	83	99	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
BCL6B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	83	99	+	-9.35714	1.76e-05	0.94	CGCTTTCCTCGGATTCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	21	41	-	12.1633	1.76e-05	0.009	GAAGCAGGATGAGTCAGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	21	41	-	12.1633	1.76e-05	0.009	GAAGCAGGATGAGTCAGAGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	9	29	+	12.1633	1.76e-05	0.009	AAAGGAGGTGGAGTTTGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	45	65	+	12.1633	1.76e-05	0.009	AGGGAAGAAGAAAGGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	80	100	+	12.1633	1.76e-05	0.009	GAGGGACCGCGGGCCGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	82	102	+	12.1633	1.76e-05	0.009	TGGGGTGGAGGGGGCAGGGCG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	42	55	-	7.74545	1.76e-05	0.127	ACTAAGAGGAAGTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	42	55	-	7.74545	1.76e-05	0.127	ACTAAGAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	42	55	-	7.74545	1.76e-05	0.127	ACTAAGAGGAAGTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	80	94	-	12.5152	1.76e-05	0.207	TCAGTTTCGTGTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	80	94	-	12.5152	1.76e-05	0.207	TCAGTTTCGTGTTTT
MYF6	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	40	49	+	13.2727	1.76e-05	1	AACAAGTGTT
MYF6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	90	99	-	13.2727	1.76e-05	1	AACAAGTGTT
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	90	99	-	13.2727	1.76e-05	1	AACAAGTGTT
MYF6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	90	99	-	13.2727	1.76e-05	1	AACAAGTGTT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	27	40	-	12.8846	1.76e-05	0.0107	TCTCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	98	111	-	12.8846	1.76e-05	0.0107	GTGCCGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	98	111	-	12.8846	1.76e-05	0.0107	GTGCCGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	98	111	-	12.8846	1.76e-05	0.0107	GTGCCGCCGCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	98	111	-	12.8846	1.76e-05	0.0107	GTGCCGCCGCCACC
KLF14	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	14	27	+	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
KLF14	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	30	43	+	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	54	67	+	12.069	1.76e-05	0.0209	CGCTCCGCCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	54	67	+	12.069	1.76e-05	0.0209	CGCTCCGCCCACCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	72	85	-	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	72	85	-	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	72	85	-	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	72	85	-	12.069	1.76e-05	0.0209	AGCCCCGCCTCCTC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	25	36	-	12.9032	1.76e-05	0.281	GCAACCCCCAAC
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	97	108	-	12.9032	1.76e-05	0.281	GAGACCACCGCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	97	108	-	12.9032	1.76e-05	0.281	GAGACCACCGCT
NR2C2	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	98	112	+	12.2857	1.76e-05	0.0891	AGGGTTGGAAGGTCG
HEY1	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	13.5091	1.76e-05	0.0969	ACCACGTGCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	8	18	+	13.0172	1.76e-05	0.0119	ACCACTCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	80	90	+	13.0172	1.76e-05	0.0119	ACCACTCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	25	35	-	13.0172	1.76e-05	0.0119	ACCACTCCCCT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	21	32	-	11.1224	1.76e-05	0.085	TGTGACGTCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	21	32	-	11.1224	1.76e-05	0.085	TGTGACGTCAGC
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	54	64	-	13.1273	1.76e-05	0.206	TCCCGGATGCC
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	54	64	-	13.1273	1.76e-05	0.206	TCCCGGATGCC
PLAG1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	53	66	+	9.55102	1.76e-05	0.0605	GGGACCGTGGGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	49	62	-	9.55102	1.76e-05	0.0605	GGGACCGTGGGGGG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	31	50	-	7.95413	1.76e-05	0.0432	CCCGCCCCCACCCCTACCCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	31	50	-	7.95413	1.76e-05	0.0432	CCCGCCCCCACCCCTACCCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	31	50	-	7.95413	1.76e-05	0.0432	CCCGCCCCCACCCCTACCCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	31	50	-	7.95413	1.76e-05	0.0432	CCCGCCCCCACCCCTACCCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	31	50	-	7.95413	1.76e-05	0.0432	CCCGCCCCCACCCCTACCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	81	+	12.9756	1.76e-05	0.0117	CCCCCGCCCAA
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	33	43	-	12.9756	1.76e-05	0.0117	CCCCCGCCCAA
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	24	42	-	12.8226	1.76e-05	0.671	TGGCCCGCTATGCCCCCGG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	12	25	+	11.5303	1.76e-05	0.252	GGTGTCAAAGGCCG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	12	25	+	11.5303	1.76e-05	0.252	GGTGTCAAAGGCCG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	12	25	+	11.5303	1.76e-05	0.252	GGTGTCAAAGGCCG
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	12	25	+	11.5303	1.76e-05	0.252	GGTGTCAAAGGCCG
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	12	25	+	11.5303	1.76e-05	0.252	GGTGTCAAAGGCCG
Zfx	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	33	46	+	13.3788	1.77e-05	0.03	CCGCCTGCGGCCTA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	10	20	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	10	20	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	1	11	-	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	50	60	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	50	60	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	50	60	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	50	60	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	62	72	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	55	65	-	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	104	114	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	104	114	+	13.8276	1.77e-05	0.0419	CGGCGGGAGCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	+	13.1273	1.77e-05	0.0548	TGCCCCGCGGCT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	35	46	+	13.1273	1.77e-05	0.0548	CGCCCTCGGGGA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	41	52	+	13.1273	1.77e-05	0.0548	CGCCCCCCGGCT
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	63	74	-	13.1273	1.77e-05	0.0548	CGCCCCCCGGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	-	13.1273	1.77e-05	0.0548	TGCCCCGCGGCT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	49	63	-	11.4	1.77e-05	0.097	GATTCCCTGCTGTGA
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	49	63	-	11.4	1.77e-05	0.097	GATTCCCTGCTGTGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	49	63	-	11.4	1.77e-05	0.097	GATTCCCTGCTGTGA
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	-	12.0758	1.77e-05	0.112	CGTCTCCATGACAATA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	-	12.0758	1.77e-05	0.112	CGTCTCCATGACAATA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	-	12.0758	1.77e-05	0.112	CGTCTCCATGACAATA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	-	12.0758	1.77e-05	0.112	CGTCTCCATGACAATA
EGR3	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	43	57	+	10.3448	1.77e-05	0.0297	CTCCGCCCACGTCAC
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	4	18	+	12.5152	1.77e-05	0.215	GGAGATGAGTAAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	97	111	-	12.5152	1.77e-05	0.215	GGAGATGAGTAAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	97	111	-	12.5152	1.77e-05	0.215	GGAGATGAGTAAGCA
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	95	105	-	13.2879	1.77e-05	0.269	ATCCGCCATCT
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	95	105	-	13.2879	1.77e-05	0.269	ATCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	95	105	-	13.2879	1.77e-05	0.269	ATCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	95	105	-	13.2879	1.77e-05	0.269	ATCCGCCATCT
SP2	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	5	19	+	13	1.77e-05	0.00626	TCCCCACCTACTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	91	105	+	13	1.77e-05	0.00626	GGCCCGCCCCGACAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	25	39	-	13	1.77e-05	0.00626	CCCCCGCCTTTTCTG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	25	39	-	13	1.77e-05	0.00626	CCCCCGCCTTTTCTG
KLF5	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	11	20	-	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	12	21	-	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	34	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	34	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	37	+	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	22	31	-	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	34	43	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	26	35	-	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	52	+	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	52	+	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	37	46	-	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	37	46	-	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	50	59	+	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	57	66	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	49	58	-	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	75	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	78	+	13.5918	1.77e-05	0.0097	GTCCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	72	81	-	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	93	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	95	104	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	105	114	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	105	114	+	13.5918	1.77e-05	0.0097	ACCCCGCCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	4	16	+	11.9697	1.77e-05	0.225	CGGGATTCCCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	4	16	+	11.9697	1.77e-05	0.225	CGGGATTCCCCCT
EHF	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	76	-	12.8689	1.77e-05	0.0968	TTCCCGGAAGCA
ELF5	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	10	20	+	12.8727	1.77e-05	0.101	TACCGGAAGTG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	27	37	+	12.8727	1.77e-05	0.101	TACCGGAAGTG
ELF5	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	49	59	+	12.8727	1.77e-05	0.101	TACCGGAAGTG
ELF5	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	70	80	+	12.8727	1.77e-05	0.101	TGCCGGAAGTA
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	5	16	-	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
HINFP	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	22	33	+	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
HINFP	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	82	93	-	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	94	105	-	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	94	105	-	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	94	105	-	13.2424	1.77e-05	0.109	CCGGGTCCGCCC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	33	46	-	12.7069	1.77e-05	0.119	GATTCCATGGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	33	46	-	12.7069	1.77e-05	0.119	GATTCCATGGTAAC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	+	13.0909	1.77e-05	0.0893	CGCCCGTGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	+	13.0909	1.77e-05	0.0893	CGCCCGTGGGCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	-	13.0909	1.77e-05	0.0893	CGCCCTGGGGCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	23	37	-	11.6557	1.77e-05	0.036	GGCCCCACCCTTCGG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	60	-	12.8065	1.77e-05	0.137	CTGCGCACGAGGGCGGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	60	-	12.8065	1.77e-05	0.137	CTGCGCACGAGGGCGGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	91	109	+	12.8065	1.77e-05	0.137	GATGGCGGCGGAGCAGGAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	91	109	+	12.8065	1.77e-05	0.137	GATGGCGGCGGAGCAGGAC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	91	109	+	12.8065	1.77e-05	0.137	GATGGCGGCGGAGCAGGAC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	24	37	+	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	24	37	+	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
SPI1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	29	42	+	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	86	-	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	86	-	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
SPI1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	91	-	7.72727	1.77e-05	0.127	ACATTGCGGAAGTT
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	5	14	+	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	19	28	-	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	44	53	+	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	68	77	+	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	71	-	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	94	-	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	101	110	-	12.949	1.77e-05	0.0121	AGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	104	113	-	12.949	1.77e-05	0.0121	AGGGTGGGGG
NFYA	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	24	41	+	12.2195	1.77e-05	0.0778	GCGGCACTGATTGGCCAG
SP4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	16	32	+	8.43636	1.77e-05	0.0154	GACGCCCCGCCCCGGCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	45	61	+	8.43636	1.77e-05	0.0154	CAGGCCCCGGCCCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	42	58	-	8.43636	1.77e-05	0.0154	GGCGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	42	58	-	8.43636	1.77e-05	0.0154	GGCGCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	42	58	-	8.43636	1.77e-05	0.0154	GGCGCCCCGCCTCCTCC
EGR4	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	4	19	-	12.6364	1.77e-05	0.0368	CCCCTCCCCCGCCTCT
JUND	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	+	13.8085	1.77e-05	0.169	AATGAGTCATA
PAX9	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	15	31	+	6.07273	1.77e-05	0.456	GGCCCCGCATGGCCGGA
PAX9	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	84	100	-	6.07273	1.77e-05	0.456	GGCCCCGCATGGCCGGA
PAX9	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	84	100	-	6.07273	1.77e-05	0.456	GGCCCCGCATGGCCGGA
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	52	66	+	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	52	66	+	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	52	66	+	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	52	66	+	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	11	25	-	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	11	25	-	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	11	25	-	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	11	25	-	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	11	25	-	12.8545	1.77e-05	0.266	GGTAGGTGAAAGTTC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	31	45	-	12.8545	1.77e-05	0.266	AAAAAGGAAAAGGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	71	81	-	13.459	1.77e-05	0.0375	CCGGAAGTTAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	71	81	-	13.459	1.77e-05	0.0375	CCGGAAGTTAG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	28	42	-	12.7636	1.77e-05	0.0974	CACCCCCCACCGCCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	95	-	12.7636	1.77e-05	0.0974	CGCCGCCTGCGGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	95	-	12.7636	1.77e-05	0.0974	CGCCGCCTGCGGGGA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	18	28	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	18	28	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	18	28	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	32	42	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	32	42	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	32	42	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	32	42	+	12.8364	1.77e-05	0.00969	GCGGAGGCGCG
HNF4G	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	43	57	+	13	1.77e-05	0.305	CGAGGTCAGGGGTCA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	64	78	+	12.5	1.77e-05	0.207	CCGCTTTCGGTTTTT
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	85	99	+	12.5	1.77e-05	0.207	TCACTTACGTTTTCC
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	16	30	-	12.5	1.77e-05	0.207	TCACTTACGTTTTCC
SP8	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	23	34	-	12.9737	1.77e-05	0.0177	CACCCGCCCACA
SP8	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	28	39	-	12.9737	1.77e-05	0.0177	GCCCCGCCCCAC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	33	44	-	12.9737	1.77e-05	0.0177	CCCCCTCCCACC
SP8	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	39	50	-	12.9737	1.77e-05	0.0177	CACCCGCCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	47	58	-	12.9737	1.77e-05	0.0177	CCCCCGCCCATC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	74	+	12.9737	1.77e-05	0.0177	GCCCCGCCCCAC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	74	+	12.9737	1.77e-05	0.0177	GCCCCGCCCCAC
SP8	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	65	76	+	12.9737	1.77e-05	0.0177	CACCCGCCCACA
SP8	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	87	+	12.9737	1.77e-05	0.0177	GCCCCGCCCCAC
SP8	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	81	92	+	12.9737	1.77e-05	0.0177	CACCCGCCCACA
SP8	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	84	95	-	12.9737	1.77e-05	0.0177	GCCCCGCCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	34	44	+	12.9675	1.77e-05	0.0117	CGCACGCCCCC
FEV	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FEV	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	13.2692	1.77e-05	0.0872	GCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	13.234	1.77e-05	0.0896	ACCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	13.234	1.77e-05	0.0896	ACCGGAAGGG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	28	42	-	12.9423	1.77e-05	0.426	GGGTGACACAGGCCT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	85	99	+	13.3269	1.77e-05	0.0911	CGCAGAGCCAATCGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	85	99	+	13.3269	1.77e-05	0.0911	CGCAGAGCCAATCGG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	85	99	+	13.3269	1.77e-05	0.0911	CGCAGAGCCAATCGG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	85	99	+	13.3269	1.77e-05	0.0911	CGCAGAGCCAATCGG
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	+	13.1639	1.77e-05	0.0635	ACCCCGGGGGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	-	13.1639	1.77e-05	0.0635	ACCCCGGGGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	74	87	-	9.53061	1.78e-05	0.0605	GGGGCTCTGGGCGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	74	87	-	9.53061	1.78e-05	0.0605	GGGGCTCTGGGCGG
Npas2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	79	88	-	13.5082	1.78e-05	0.333	TCCACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	79	88	-	13.5082	1.78e-05	0.333	TCCACGTGTG
POU2F1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	17	28	+	12.9	1.78e-05	1	AGTATGTAAATC
POU2F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	17	28	+	12.9	1.78e-05	1	AGTATGTAAATC
KLF14	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	74	87	+	12.0517	1.78e-05	0.0209	CGCTCCGCCCCCTG
KLF14	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	88	101	+	12.0517	1.78e-05	0.0209	AGCCCCGCCCCTGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	8	21	-	12.0517	1.78e-05	0.0209	CGCTCCGCCCCCTG
KLF14	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	14	27	-	12.0517	1.78e-05	0.0209	AGCCCCGCCCCTGC
EGR3	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	89	103	+	10.3276	1.78e-05	0.0298	CCGCGCCCCCGCCCG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	42	55	+	11.1143	1.78e-05	0.105	ACCTGACGTCATAT
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	42	55	+	11.1143	1.78e-05	0.105	ACCTGACGTCATAT
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	42	55	+	11.1143	1.78e-05	0.105	ACCTGACGTCATAT
SP1	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	16	26	-	13.3846	1.78e-05	0.00726	TCCCCTCCCCA
STAT3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	5	15	+	13.5306	1.78e-05	0.182	TTGCCTGGAAA
USF2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	56	66	-	13.5306	1.78e-05	0.0783	AGCACGTGACT
USF2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	59	+	13.5306	1.78e-05	0.0783	AGCACGTGACT
Vdr	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	61	76	-	8.42623	1.78e-05	0.736	TAGTTCAGTGAGTGCG
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	61	76	-	8.42623	1.78e-05	0.736	TAGTTCAGTGAGTGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	27	43	-	8.41818	1.78e-05	0.0155	GCGGCCCCGCCCCGGCC
GLIS3	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	35	48	+	8.19697	1.78e-05	0.379	CAGCCCCCGCGATG
ETV6	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	14	23	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	24	33	+	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	27	36	+	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	44	53	+	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	71	80	+	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	68	77	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	87	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	79	88	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	79	88	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	79	88	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	91	-	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	92	101	+	13.2308	1.78e-05	0.0706	GGAGGAAGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	19	39	-	12.1429	1.78e-05	0.00907	GGGGGAGGGCACAGCGGAGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	19	39	-	12.1429	1.78e-05	0.00907	GGGGGAGGGCACAGCGGAGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	19	39	-	12.1429	1.78e-05	0.00907	GGGGGAGGGCACAGCGGAGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	20	40	+	12.1429	1.78e-05	0.00907	GGAGGCGCGGGAGGCGGTGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	20	40	+	12.1429	1.78e-05	0.00907	GGAGGCGCGGGAGGCGGTGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	20	40	+	12.1429	1.78e-05	0.00907	GGAGGCGCGGGAGGCGGTGCG
Nr2f6	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	95	108	-	11.5152	1.78e-05	0.252	GCGGTGAAAGGTTA
Nr2f6	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	7	20	+	11.5152	1.78e-05	0.252	GCGGTGAAAGGTTA
EGR1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	18	31	+	12.8654	1.78e-05	0.0108	CCCTCGCTCCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	17	30	-	12.8654	1.78e-05	0.0108	TCGCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	26	39	-	12.8654	1.78e-05	0.0108	TCCACTCCCCCACG
EGR1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	84	97	-	12.8654	1.78e-05	0.0108	CCCTCGCTCCCGCC
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	31	40	+	13.1148	1.78e-05	0.718	GGTGCGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	53	62	-	13.1148	1.78e-05	0.718	GGTGCGGGTG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	53	62	-	13.1148	1.78e-05	0.718	GGTGCGGGTG
GCM2	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	62	71	-	13.1148	1.78e-05	0.718	GGTGCGGGTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	9	22	+	9.52041	1.78e-05	0.0605	GGGGGAAAAGGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	93	106	-	9.52041	1.78e-05	0.0605	GGGGGAAAAGGGGA
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	61	75	+	11.6393	1.78e-05	0.0361	TGCCCCACCCTTATT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	61	75	+	11.6393	1.78e-05	0.0361	TGCCCCACCCTTATT
TBX20	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	100	110	-	13.0455	1.78e-05	0.921	AGGGTGTGATG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	5	15	+	13.0455	1.78e-05	0.921	AGGGTGTGATG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	5	15	+	13.0455	1.78e-05	0.921	AGGGTGTGATG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	19	+	12.9828	1.78e-05	0.00629	GCCCCTCCCAGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	19	+	12.9828	1.78e-05	0.00629	GCCCCTCCCAGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	36	+	12.9828	1.78e-05	0.00629	GCCCCTCCCAGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	36	+	12.9828	1.78e-05	0.00629	GCCCCTCCCAGCGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	63	77	+	12.9828	1.78e-05	0.00629	GCACCTCCCCCCACC
SP2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	95	109	+	12.9828	1.78e-05	0.00629	ACCCCGCCCTGTCGC
SP2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	6	20	-	12.9828	1.78e-05	0.00629	ACCCCGCCCTGTCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	9	23	-	12.9828	1.78e-05	0.00629	ACTCCTCCTCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	14	28	-	12.9828	1.78e-05	0.00629	CCCCCTCCTTTTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	14	28	-	12.9828	1.78e-05	0.00629	CCCCCTCCTTTTCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	27	41	-	12.9828	1.78e-05	0.00629	GCACCTCCCCCCACC
SP2	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	29	43	-	12.9828	1.78e-05	0.00629	GCTCCACCCCTGCGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	62	81	-	7.91743	1.79e-05	0.0435	CCTCCACACCCCCACCCCGG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	62	81	-	7.91743	1.79e-05	0.0435	CCTCCACACCCCCACCCCGG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	4	14	-	13.4262	1.79e-05	0.0376	CCGGAAGCACG
Gabpa	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	101	111	+	13.4262	1.79e-05	0.0376	CCGGAAGCACG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	25	38	-	11.4918	1.79e-05	0.176	CGCCCCCCGCCACC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	25	38	-	11.4918	1.79e-05	0.176	CGCCCCCCGCCACC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	-	11.0816	1.79e-05	0.085	GCTTACGTCACA
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	-	11.0816	1.79e-05	0.085	GCTTACGTCACA
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	18	31	+	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	18	31	+	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	18	31	+	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	18	31	+	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	101	114	-	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	101	114	-	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	101	114	-	6	1.79e-05	0.115	CAATGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	101	114	-	6	1.79e-05	0.115	CAATGACGTCTCCG
Rarg	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	55	70	+	3.32653	1.79e-05	0.877	GAGCTCAAGAGGGCAG
Rarg	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	45	60	-	3.32653	1.79e-05	0.877	GAGCTCAAGAGGGCAG
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	77	95	-	12.7903	1.79e-05	0.137	CTGACCGGCAGTCCGTGGC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	91	105	-	11.8525	1.79e-05	0.291	GTGACTCAGCGCCCG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	91	105	-	11.8525	1.79e-05	0.291	GTGACTCAGCGCCCG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	18	32	+	11.8525	1.79e-05	0.291	GTGACTCAGCGCCCG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	18	32	+	11.8525	1.79e-05	0.291	GTGACTCAGCGCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	31	41	+	12.935	1.79e-05	0.0118	GCCACACCCAG
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	28	38	-	12.935	1.79e-05	0.0118	GCCACACCCAG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	32	43	+	12.9605	1.79e-05	0.0177	GACCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	32	43	+	12.9605	1.79e-05	0.0177	GACCCGCCCCGT
MAX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	13.2885	1.79e-05	0.276	CACACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	13.2885	1.79e-05	0.276	CACACGTGCC
MAX	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	13.2885	1.79e-05	0.276	GCCACGTGGC
MAX	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	13.2885	1.79e-05	0.276	GCCACGTGGC
ELF4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	27	-	12.2623	1.79e-05	0.073	AAACCGGAAGCT
ISL2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	20	27	-	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	20	27	-	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	20	27	-	11.885	1.79e-05	1	GCACTTAA
ISL2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	47	54	-	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	51	58	-	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	51	58	-	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	61	68	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	61	68	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	61	68	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	61	68	+	11.885	1.79e-05	1	GCACTTAA
ISL2	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	88	95	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	105	112	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	105	112	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	105	112	+	11.885	1.79e-05	1	GCACTTAA
ISL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	105	112	+	11.885	1.79e-05	1	GCACTTAA
Dlx2	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	34	41	+	10.8	1.79e-05	1	GCAATTAC
Dlx2	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	74	81	-	10.8	1.79e-05	1	GCAATTAC
DLX6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.9492	1.79e-05	1	CCAATTAC
DLX6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.9492	1.79e-05	1	CCAATTAC
DLX6	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.9492	1.79e-05	1	CCAATTAC
DLX6	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.9492	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.6372	1.79e-05	1	CCAATTAC
Dlx4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.6372	1.79e-05	1	CCAATTAC
Dlx4	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.6372	1.79e-05	1	CCAATTAC
Dlx4	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.6372	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.3356	1.79e-05	1	CCAATTAC
Dlx3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.3356	1.79e-05	1	CCAATTAC
Dlx3	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.3356	1.79e-05	1	CCAATTAC
Dlx3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.3356	1.79e-05	1	CCAATTAC
BSX	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.6038	1.79e-05	1	CCAATTAG
BSX	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.6038	1.79e-05	1	CCAATTAG
BSX	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.6038	1.79e-05	1	CCAATTAG
BSX	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.6038	1.79e-05	1	CCAATTAG
BARX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	11	1.79e-05	1	GCAATTAG
BARX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	11	1.79e-05	1	GCAATTAG
BARX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	11	1.79e-05	1	GCAATTAG
BARX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	11	1.79e-05	1	GCAATTAG
BARX1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	11	1.79e-05	1	GCAATTAG
Shox2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	11.48	1.79e-05	1	CCAATTAG
Shox2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	11.48	1.79e-05	1	CCAATTAG
Shox2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	11.48	1.79e-05	1	CCAATTAG
Shox2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	11.48	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.6106	1.79e-05	1	CCAATTAG
RAX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.6106	1.79e-05	1	CCAATTAG
RAX2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.6106	1.79e-05	1	CCAATTAG
OTX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	39	46	+	11.9574	1.79e-05	1	TTAATCCG
OTX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	39	46	+	11.9574	1.79e-05	1	TTAATCCG
OTX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	39	46	+	11.9574	1.79e-05	1	TTAATCCG
OTX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	39	46	+	12.1277	1.79e-05	1	TTAATCCG
OTX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	39	46	+	12.1277	1.79e-05	1	TTAATCCG
OTX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	39	46	+	12.1277	1.79e-05	1	TTAATCCG
Msx3	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	11.8868	1.79e-05	1	CCAATTAG
Msx3	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	11.8868	1.79e-05	1	CCAATTAG
Msx3	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	11.8868	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.7458	1.79e-05	1	CCAATTAG
LHX9	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.7458	1.79e-05	1	CCAATTAG
LHX9	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.7458	1.79e-05	1	CCAATTAG
Pitx1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	18	25	+	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	26	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	26	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	19	26	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	19	26	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	19	26	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	33	40	+	12.1455	1.79e-05	1	TTAATCCC
Pitx1	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	35	42	-	12.1455	1.79e-05	1	TTAATCCC
Pitx1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	43	50	+	12.1455	1.79e-05	1	TTAATCCC
Pitx1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	64	71	+	12.1455	1.79e-05	1	TTAATCCC
Pitx1	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	89	96	+	12.1455	1.79e-05	1	TTAATCCC
Pitx1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	90	97	-	12.1455	1.79e-05	1	TTAATCCC
MSX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	11.6429	1.79e-05	1	CCAATTAG
MSX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	11.6429	1.79e-05	1	CCAATTAG
MSX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	11.6429	1.79e-05	1	CCAATTAG
ISX	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	11.7966	1.79e-05	1	CCAATTAG
ISX	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	11.7966	1.79e-05	1	CCAATTAG
ISX	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	11.7966	1.79e-05	1	CCAATTAG
ISX	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	11.7966	1.79e-05	1	CCAATTAG
SHOX	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	+	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	+	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	-	10.5248	1.79e-05	1	CTAATTGG
SHOX	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	+	10.5248	1.79e-05	1	CTAATTGG
SHOX	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	-	10.5248	1.79e-05	1	CTAATTGG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	2	9	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	2	9	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	10	17	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	10	17	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	4	11	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	13	20	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	9	16	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	9	16	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	9	16	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	9	16	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	27	34	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	29	36	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	55	62	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	51	58	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	51	58	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	51	58	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	53	60	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	53	60	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	59	66	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	68	75	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	68	75	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	68	75	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	68	75	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	68	75	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	81	88	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	99	106	+	12.8689	1.79e-05	0.306	CCAATCAA
Dux	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	95	102	-	12.8689	1.79e-05	0.306	CCAATCAA
Dux	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	98	105	-	12.8689	1.79e-05	0.306	CCAATCAA
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	43	50	-	13.623	1.79e-05	1	CCATATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	99	106	-	13.623	1.79e-05	1	CCATATGT
Sox2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	53	60	+	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	47	54	-	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	47	54	-	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	47	54	-	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	58	65	+	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.1.0	75	82	+	13.9508	1.79e-05	1	CCTTTGTT
Sox2	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	85	92	+	13.9508	1.79e-05	1	CCTTTGTT
Prrx2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.2832	1.79e-05	1	CCAATTAG
Prrx2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.2832	1.79e-05	1	CCAATTAG
Prrx2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.2832	1.79e-05	1	CCAATTAG
EN1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	11.5424	1.79e-05	1	CCAATTAG
EN1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	11.5424	1.79e-05	1	CCAATTAG
EN1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	11.5424	1.79e-05	1	CCAATTAG
EN1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	11.5424	1.79e-05	1	CCAATTAG
TEAD3	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	1	8	+	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	48	55	+	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	68	75	+	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	93	100	+	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	99	106	+	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	99	106	+	13.2041	1.79e-05	0.775	ACATTCCA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	42	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	42	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	42	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	42	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	46	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	46	54	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	46	54	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	73	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	86	-	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	81	89	-	13.3966	1.79e-05	0.225	ATGAGTCAC
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	49	56	+	13.623	1.79e-05	1	CCATATGT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	24	31	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	24	31	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	40	47	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	68	75	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	72	79	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	72	79	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	72	79	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	72	79	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	89	96	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	95	102	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	97	104	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	97	104	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	107	114	-	13.2041	1.79e-05	0.775	ACATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	107	114	-	13.2041	1.79e-05	0.775	ACATTCCA
JDP2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	22	30	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	29	37	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	34	42	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	69	77	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	85	93	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	85	93	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	85	93	+	13.3966	1.79e-05	0.225	ATGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	85	93	+	13.3966	1.79e-05	0.225	ATGAGTCAC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	81	97	+	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	81	97	+	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	81	97	+	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	81	97	+	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	81	97	+	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
PAX9	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	18	34	-	6.03636	1.79e-05	0.456	GGACACGGGTCGCTGGC
RFX2	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	+	9.78571	1.79e-05	0.119	CGTTGCCATAGTTCCA
RFX2	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	-	9.78571	1.79e-05	0.119	CGTTGCCATAGTTCCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	63	76	-	12.9839	1.79e-05	0.279	GTTCCTGGGAAGCC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	63	76	-	12.9839	1.79e-05	0.279	GTTCCTGGGAAGCC
TEF	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	+	13.1455	1.79e-05	1	TGTTACATAAGC
EGR4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	43	58	+	12.6182	1.79e-05	0.0368	CTCCGCCCACGTCACC
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	34	+	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	13	26	-	9.5102	1.79e-05	0.0605	GTGGGGTTAGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	29	42	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	29	42	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	29	42	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	29	42	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	29	42	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	46	59	-	9.5102	1.79e-05	0.0605	GGGCCTCAAGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	47	60	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	47	60	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	60	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	60	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	75	88	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	81	94	-	9.5102	1.79e-05	0.0605	GGGGGCGGGGGGGG
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	+	12.3636	1.79e-05	0.108	GATGACGTAAGC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	+	12.3636	1.79e-05	0.108	GATGACGTAAGC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	+	12.3636	1.79e-05	0.108	GATGACGTAAGC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	+	12.3636	1.79e-05	0.108	GATGACGTAAGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	28	38	-	13.6724	1.79e-05	0.0353	AGGAGGGAGGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	35	45	-	13.6724	1.79e-05	0.0353	AGGAGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	41	51	-	13.6724	1.79e-05	0.0353	AGGAGGGAGGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	44	54	-	13.6724	1.79e-05	0.0353	AGGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	24	34	+	13.6724	1.79e-05	0.0353	GGGAGGGAGGT
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	24	34	+	13.6724	1.79e-05	0.0353	GGGAGGGAGGT
E2F6	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	64	74	+	13.6724	1.79e-05	0.0353	AGGAGGGAGGA
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	-	13.1818	1.79e-05	0.247	TCCACGTGCT
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	-	13.1818	1.79e-05	0.247	TCCACGTGCT
ETS1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	13.3448	1.79e-05	0.076	ACAGGAAGTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	16	29	+	12.0345	1.79e-05	0.0209	CGTCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	9	22	-	12.0345	1.79e-05	0.0209	GGCTCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	9	22	-	12.0345	1.79e-05	0.0209	GGCTCCGCCCCTCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	70	83	+	12.0345	1.79e-05	0.0209	GGCCACGGCCACTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	70	83	+	12.0345	1.79e-05	0.0209	GGCCACGGCCACTC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	75	88	+	12.0345	1.79e-05	0.0209	AGCCACACCCACAC
EHF	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	13	24	+	12.8525	1.79e-05	0.0968	AAACAGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	75	86	+	12.8525	1.79e-05	0.0968	AAACAGGAAGTG
EHF	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	40	-	12.8525	1.79e-05	0.0968	AAACAGGAAGTG
EHF	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	67	-	12.8525	1.79e-05	0.0968	AAACAGGAAGTG
Tcf21	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	95	108	+	10.8289	1.79e-05	0.557	ACACCAGCTGGCAG
NFATC3	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	70	79	+	11.8081	1.79e-05	0.908	ACTTTCCATT
ELF3	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	47	59	-	11.7241	1.79e-05	0.112	ATCCAGGAAGTGC
ELF3	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	56	68	+	11.7241	1.79e-05	0.112	ATCCAGGAAGTGC
Tcf12	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	46	+	13.898	1.79e-05	0.135	AGCAGCTGCGA
Tcf12	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	74	+	13.898	1.79e-05	0.135	AGCAGCTGCGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	5	19	+	12.7568	1.79e-05	0.142	GGTGGGGAGAGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	5	19	+	12.7568	1.79e-05	0.142	GGTGGGGAGAGGCCA
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	12	26	-	12.7455	1.79e-05	0.0974	TGCCACCTGCTGGTT
ZIC4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	13	27	-	12.7455	1.79e-05	0.0974	CGCCCCCCGCCGCCG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	2	14	-	7.12245	1.79e-05	0.233	GAGGGATTCCCCC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	101	113	+	7.12245	1.79e-05	0.233	GAGGGATTCCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	33	43	-	13.2576	1.79e-05	0.0428	AGACCCACCCA
HEY2	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	+	13.1207	1.79e-05	0.16	GGCGCGTGCC
JUNB	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	69	79	+	13.8163	1.79e-05	0.132	AAGTGAGTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	70	80	+	13.8163	1.79e-05	0.132	AAGTGAGTCAG
JUNB	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	35	45	-	13.8163	1.79e-05	0.132	AAGTGAGTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	36	46	-	13.8163	1.79e-05	0.132	AAGTGAGTCAG
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	67	81	-	8.91011	1.79e-05	0.175	GCAACCCTAGGGAGA
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	67	81	-	8.91011	1.79e-05	0.175	GCAACCCTAGGGAGA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	-	13.9636	1.79e-05	0.142	AATGAGTCAGC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	-	13.2364	1.79e-05	0.0419	TGCCTCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	-	13.2364	1.79e-05	0.0419	TGCCTCCGGCC
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	28	+	12.3455	1.79e-05	0.108	TCTGACGTCATG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	28	+	12.3455	1.79e-05	0.108	TCTGACGTCATG
Rarb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	16	31	-	1.43103	1.8e-05	0.742	GAAGGCCGAAAGTTTA
Rarb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	16	31	-	1.43103	1.8e-05	0.742	GAAGGCCGAAAGTTTA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	73	83	-	13.7931	1.8e-05	0.0419	AGGCGGGAACC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	73	83	-	13.7931	1.8e-05	0.0419	AGGCGGGAACC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	+	12.9828	1.8e-05	0.0537	TGCCTTGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	+	12.9828	1.8e-05	0.0537	TGCCTTGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	+	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	+	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	-	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	-	12.9828	1.8e-05	0.0537	TCCCCTTCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	-	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	-	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	+	12.9828	1.8e-05	0.0537	TCCCCTTCGGGCC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	+	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	-	12.9828	1.8e-05	0.0537	TGCCTTGCAGGCA
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	-	12.9828	1.8e-05	0.0537	CGCCCCGGAGGCC
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	80	90	-	12.8793	1.8e-05	0.215	TCCTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	80	90	-	12.8793	1.8e-05	0.215	TCCTGTGGTTG
Klf12	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	26	40	-	11.623	1.8e-05	0.0361	TGCCCCGCCCCACTC
Klf12	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	75	89	+	11.623	1.8e-05	0.0361	TGCCCCGCCCCACTC
HOXC10	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	38	-	12.8364	1.8e-05	1	ATCGTAAAAA
HOXC10	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	38	-	12.8364	1.8e-05	1	ATCGTAAAAA
HOXC10	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	77	86	+	12.8364	1.8e-05	1	ATCGTAAAAA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	17	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	17	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	17	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	17	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	28	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	28	+	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	7	16	-	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	7	16	-	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	7	16	-	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	7	16	-	13.4262	1.8e-05	0.21	GGTGACGTAA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	7	16	-	13.4262	1.8e-05	0.21	GGTGACGTAA
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	17	29	+	13.4082	1.8e-05	0.301	GGGGTGACGTAAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	17	29	+	13.4082	1.8e-05	0.301	GGGGTGACGTAAT
GLIS2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	16	29	+	11.4754	1.8e-05	0.176	CGCCCCCCACCTCG
ESR2	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	23	37	-	12.9231	1.8e-05	0.426	GGGTCAGACCGTCAT
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	28	42	-	12.9231	1.8e-05	0.426	GGGTGACGCAGGCCT
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	89	102	+	9.32653	1.8e-05	0.365	TGTCAGCCGGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	89	102	+	9.32653	1.8e-05	0.365	TGTCAGCCGGCCAA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	6	19	+	9.5	1.8e-05	0.0605	GGGGCCGCCAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	6	19	+	9.5	1.8e-05	0.0605	GGGGCCGCCAGGGG
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	82	92	-	13.5192	1.8e-05	0.244	TGGATGAGTCA
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
ETV5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.4909	1.8e-05	0.075	GCCGGAAGCA
SP4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	7	23	+	8.38182	1.8e-05	0.0156	TTCGCCCCGCCCAGCGC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	12	24	-	13.1311	1.8e-05	0.0636	CGCCCGCCGGGCT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	91	103	+	13.1311	1.8e-05	0.0636	CGCCCGCCGGGCT
TP63	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	29	46	-	4.08621	1.8e-05	0.559	GGCGAGCCGGGACTTGCG
TP63	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	69	86	+	4.08621	1.8e-05	0.559	GGCGAGCCGGGACTTGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	-	13.5091	1.8e-05	0.063	CGCCCCGGGCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	39	49	+	13.5091	1.8e-05	0.063	CGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	66	76	-	13.5091	1.8e-05	0.063	CGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	83	93	-	13.5091	1.8e-05	0.063	CGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	83	93	-	13.5091	1.8e-05	0.063	CGCCTGGGGCG
ZIC3	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	27	41	+	11.3571	1.8e-05	0.0982	CCCCTCCTGCCGGGC
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	28	44	+	12.4592	1.8e-05	0.338	AGGTGATGCTGGGGTGA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	38	54	-	7.44262	1.8e-05	0.563	AGGTCAGAGGAAGGGGA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	2	12	-	13.3654	1.8e-05	0.00733	GTCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	2	12	-	13.3654	1.8e-05	0.00733	GTCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	2	12	-	13.3654	1.8e-05	0.00733	GTCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	9	19	-	13.3654	1.8e-05	0.00733	GCCCCTCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	9	19	-	13.3654	1.8e-05	0.00733	GCCCCTCCTCG
SP1	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	29	39	+	13.3654	1.8e-05	0.00733	GTCCCTCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	76	86	-	13.3654	1.8e-05	0.00733	GTCCCTCCCCG
EGR3	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	1	15	-	10.2931	1.8e-05	0.0299	CCACCCCCACCCACC
EGR3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	49	63	-	10.2931	1.8e-05	0.0299	TTCCGCCCACGTCAT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	71	85	+	10.2931	1.8e-05	0.0299	CCCCGCCCCCTCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	71	85	+	10.2931	1.8e-05	0.0299	CCCCGCCCCCTCCCA
SCRT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	86	98	+	10.8361	1.8e-05	0.673	CAGCCACAGGTGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	52	72	-	12.1224	1.8e-05	0.00908	AGGGAAGGCGGGGCCGGAGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	77	97	-	12.1224	1.8e-05	0.00908	GGGGCTGGGGGGAGGGGTAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	18	38	+	12.1224	1.8e-05	0.00908	GGGGCTGGGGGGAGGGGTAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	26	46	+	12.1224	1.8e-05	0.00908	AGGGAAGGCGGGGCCGGAGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	43	63	+	12.1224	1.8e-05	0.00908	AGGGAAGGCGGGGCCGGAGAG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	37	56	-	7.88991	1.8e-05	0.0436	CCCACCCCCCACCCCCACCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	39	+	7.88991	1.8e-05	0.0436	ACCACCCCCCCCCCCCCCCC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	53	73	+	12.0161	1.8e-05	0.139	TTCCTCTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	53	73	+	12.0161	1.8e-05	0.139	TTCCTCTTTTTTTTTTTTTTT
CTCF	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	2	20	-	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
CTCF	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	95	113	+	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
CTCF	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	95	113	+	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
CTCF	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	95	113	+	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
CTCF	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	95	113	+	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
CTCF	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	95	113	+	11.6066	1.8e-05	0.0818	TCACCACAAGGAGACAGGA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	5	15	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	21	31	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	23	33	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	23	33	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	26	36	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	44	54	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	79	89	+	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	1	11	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	1	11	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	1	11	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	26	36	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	38	48	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	52	62	-	13.2424	1.8e-05	0.0428	CGCCCCGCCCT
EGR1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	21	34	-	12.8462	1.8e-05	0.0109	ATGCCGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	53	66	+	12.8462	1.8e-05	0.0109	GCCCCGCCCTCGTC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	+	13.0727	1.8e-05	0.0893	AGCCCTGAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	-	13.0727	1.8e-05	0.0893	TGGCCTCGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	-	13.0727	1.8e-05	0.0893	TGGCCTCGGGCA
DUX4	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	19	29	+	13.5532	1.8e-05	1	TAAATGAATCA
DUX4	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	90	100	-	13.5532	1.8e-05	1	TAAATGAATCA
ELF1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	20	-	12.3818	1.8e-05	0.0844	CTACCGGAAGTA
ELF1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	72	83	+	12.3818	1.8e-05	0.0844	CTACCGGAAGTA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	27	+	12.9655	1.8e-05	0.00633	CCCCCGCCCTCATCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	16	30	+	12.9655	1.8e-05	0.00633	CGCCCTCCTCCTACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	31	45	+	12.9655	1.8e-05	0.00633	CGCCCTCCTCCTACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	76	90	+	12.9655	1.8e-05	0.00633	CCTCCTCCTCCCCGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	76	90	+	12.9655	1.8e-05	0.00633	CCTCCTCCTCCCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	76	90	+	12.9655	1.8e-05	0.00633	CCTCCTCCTCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	19	33	-	12.9655	1.8e-05	0.00633	CCTCCTCCCCTCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	19	33	-	12.9655	1.8e-05	0.00633	CCTCCTCCCCTCCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	25	39	-	12.9655	1.8e-05	0.00633	CCTCCTCCTCCCCGC
ELK1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	12.8936	1.8e-05	0.0527	ACCGGAAATA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	35	44	+	12.9358	1.8e-05	0.0362	ATCCCCCCAC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	87	96	-	13.6122	1.8e-05	0.365	TGCACCTGCA
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	87	96	-	13.6122	1.8e-05	0.365	TGCACCTGCA
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	45	62	+	8.93103	1.81e-05	0.14	AGACCACGCCCCGCTGCA
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	45	62	+	8.93103	1.81e-05	0.14	AGACCACGCCCCGCTGCA
PAX5	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	27	45	+	12.7742	1.81e-05	0.137	CGGCGCAGCCCGCCGGGAC
KLF14	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	54	67	+	12.0172	1.81e-05	0.0209	GGCCCCACCCACTC
KLF14	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	48	61	-	12.0172	1.81e-05	0.0209	GGCCCCACCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	61	74	-	12.0172	1.81e-05	0.0209	ACCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	61	74	-	12.0172	1.81e-05	0.0209	ACCCCCGCCCCCTC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	50	63	+	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	50	63	+	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	50	63	+	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	50	63	+	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	50	63	+	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
XBP1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	52	65	-	12.5769	1.81e-05	0.446	CGCGCTACGTCATC
EHF	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	32	43	-	12.8361	1.81e-05	0.097	GACCCGGAAGAG
Myog	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	43	+	13.8367	1.81e-05	0.106	GACAGCTGTGG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	72	82	-	13.8367	1.81e-05	0.106	GACAGCTGTGG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	72	82	-	13.8367	1.81e-05	0.106	GACAGCTGTGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	40	53	+	9.4898	1.81e-05	0.0605	GGGGCCGAAACGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	62	75	-	9.4898	1.81e-05	0.0605	GGGGCCGAAACGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	18	33	-	12.6	1.81e-05	0.0368	CCCCGCCCCCGGACGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	18	33	-	12.6	1.81e-05	0.0368	CCCCGCCCCCGGACGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	57	72	-	12.6	1.81e-05	0.0368	CCCCGCCCCCTCCCTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	57	72	-	12.6	1.81e-05	0.0368	CCCCGCCCCCTCCCTT
EGR4	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	59	74	-	12.6	1.81e-05	0.0368	CTTCGCCCACCCCCTG
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	67	77	+	12.8182	1.81e-05	0.00988	CAGCCTGCGCG
TFCP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	85	94	-	13.2879	1.81e-05	1	AAACCGGTTG
TFCP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	85	94	-	13.2879	1.81e-05	1	AAACCGGTTG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	76	90	+	11.6066	1.81e-05	0.0361	AAACACGCCCATTCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	13.3143	1.81e-05	0.0768	GCCGGAAATG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	13.3143	1.81e-05	0.0768	GCCGGAAATG
ERF	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	13.3143	1.81e-05	0.0768	GCCGGAAATG
ERF	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	13.3143	1.81e-05	0.0768	GCCGGAAATG
ERF	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	13.3143	1.81e-05	0.0768	GCCGGAAATG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	5	21	+	8.36364	1.81e-05	0.0156	TAGCCCCCGCCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	5	21	+	8.36364	1.81e-05	0.0156	TAGCCCCCGCCCCTGCC
SP4	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	6	22	+	8.36364	1.81e-05	0.0156	GCGGCCCCCCCCCCCCG
SP4	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	41	57	+	8.36364	1.81e-05	0.0156	GCGGCCCCCCCCCCCCG
SP4	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	37	53	-	8.36364	1.81e-05	0.0156	GCAGCCGCGCCCCCAGC
SP4	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	62	78	+	8.36364	1.81e-05	0.0156	GCAGCCGCGCCCCCAGC
SP4	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	58	74	-	8.36364	1.81e-05	0.0156	GCGGCCCCCCCCCCCCG
SP4	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	93	109	-	8.36364	1.81e-05	0.0156	GCGGCCCCCCCCCCCCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	28	41	+	5.95455	1.81e-05	0.115	ACGTGACGTCATGA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	28	41	+	5.95455	1.81e-05	0.115	ACGTGACGTCATGA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	28	41	+	5.95455	1.81e-05	0.115	ACGTGACGTCATGA
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	-	9.57447	1.81e-05	0.905	GAGGACGAAACGTTCCG
CREB3	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	10	23	-	12.5143	1.81e-05	0.206	ACGCCACGTGACCT
CREB3	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	68	81	-	12.5143	1.81e-05	0.206	GCACCACGTCACGG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	13	22	+	10.4839	1.81e-05	0.0422	GGCGCGTGCA
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	13	22	-	10.4839	1.81e-05	0.0422	TGCACGCGCC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	81	95	-	11.8197	1.81e-05	0.291	ATGACTAATCACTAC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	81	95	-	11.8197	1.81e-05	0.291	ATGACTAATCACTAC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	31	45	+	11.8197	1.81e-05	0.291	ATGACTAATCACTAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	31	45	+	11.8197	1.81e-05	0.291	ATGACTAATCACTAC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	27	41	-	10.2759	1.81e-05	0.03	CACCGCCCCCCCCCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	-	12.9655	1.81e-05	0.0537	AGCCCTGCCGGCA
TEAD1	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	94	103	-	12.371	1.81e-05	0.755	AACATTCCAC
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	79	91	-	11.6897	1.81e-05	0.112	TAGCAGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	79	91	-	11.6897	1.81e-05	0.112	TAGCAGGAAGTCA
ELF3	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	5	17	+	11.6897	1.81e-05	0.112	TAGCAGGAAGTCA
PPARG	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	76	95	+	10.4333	1.81e-05	1	GTGGGGCGATGGGACCCAGT
PPARG	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	20	39	-	10.4333	1.81e-05	1	GTGGGGCGATGGGACCCAGT
E2F4	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	10	20	+	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	56	66	+	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	56	66	+	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	49	59	-	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	95	105	-	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	95	105	-	13.7759	1.81e-05	0.0419	GGGCGCGAGGG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	76	89	+	9.31633	1.82e-05	0.365	TGCCACCTTGCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	76	89	+	9.31633	1.82e-05	0.365	TGCCACCTTGCCAG
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	45	57	+	11.8939	1.82e-05	0.225	TGGGACTGCCCCT
TFAP2A	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	-	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	-	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
TFAP2A	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	+	13.2182	1.82e-05	0.0419	CGCCCCGGGCT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	+	12.3273	1.82e-05	0.108	TCTTACGTCACC
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	+	12.3273	1.82e-05	0.108	TCTTACGTCACC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	+	12.3273	1.82e-05	0.108	TCTTACGTCACC
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	+	12.3273	1.82e-05	0.108	TCTTACGTCACC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	+	12.3273	1.82e-05	0.108	TCTTACGTCACC
NEUROG2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	13.9242	1.82e-05	1	AACATATGCT
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	13.9242	1.82e-05	1	AACATATGCT
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	13.9242	1.82e-05	1	AACATATGCT
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	50	63	-	12.6552	1.82e-05	0.12	GTTGTCAGGGCGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	50	63	-	12.6552	1.82e-05	0.12	GTTGTCAGGGCGAC
CDX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	46	54	-	12.2264	1.82e-05	1	GTAATAAAA
CDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	46	54	-	12.2264	1.82e-05	1	GTAATAAAA
SP8	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	24	35	+	12.9342	1.82e-05	0.0177	ACCACCCCCAGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	56	67	-	12.9342	1.82e-05	0.0177	GAACCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	56	67	-	12.9342	1.82e-05	0.0177	GAACCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	62	73	-	12.9342	1.82e-05	0.0177	GCCACGCCCACG
KLF16	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	36	46	+	12.9828	1.82e-05	0.0122	CCCACTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	48	58	+	12.9828	1.82e-05	0.0122	CCCACTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	48	58	+	12.9828	1.82e-05	0.0122	CCCACTCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	85	95	+	12.9828	1.82e-05	0.0122	CCCACTCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	2	12	-	12.9828	1.82e-05	0.0122	CCCACTCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	20	30	-	12.9828	1.82e-05	0.0122	CCCACTCCCCT
TCF7L2	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	35	48	+	13.3091	1.82e-05	1	AGGGATCAAAGAAG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	13.069	1.82e-05	0.0709	ACCGGAACTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	13.069	1.82e-05	0.0709	ACCGGAACTG
INSM1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	15	26	+	13.0816	1.82e-05	0.146	GGCAAGGGGGCT
INSM1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	35	46	+	13.0816	1.82e-05	0.146	GGCAAGGGGGCT
INSM1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	69	80	-	13.0816	1.82e-05	0.146	GGCAAGGGGGCT
INSM1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	89	100	-	13.0816	1.82e-05	0.146	GGCAAGGGGGCT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	12	21	+	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	12	21	+	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	3	12	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	12	21	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	12	21	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	12	21	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	12	21	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	17	26	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	17	26	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	31	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	31	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	31	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	31	-	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	84	93	+	12.9184	1.82e-05	0.0121	TGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	85	94	+	12.9184	1.82e-05	0.0121	TGGGCGGGGA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
ETV1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	12.9273	1.82e-05	0.0746	GCCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.9273	1.82e-05	0.0746	GCCGGAAGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	+	13.1148	1.82e-05	0.0554	GGCCCGAGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	35	+	13.1148	1.82e-05	0.0554	TGCCCACAAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	35	+	13.1148	1.82e-05	0.0554	TGCCCACAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	35	+	13.1148	1.82e-05	0.0554	TGCCCACAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	35	+	13.1148	1.82e-05	0.0554	TGCCCACAAGGCA
PLAG1	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	74	87	-	9.46939	1.82e-05	0.0605	GGGGGCGCGGGGGG
SP4	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	27	43	+	8.34545	1.82e-05	0.0156	GCCGCCCCGCCCCGTCC
SP4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	38	54	+	8.34545	1.82e-05	0.0156	AGCGCCCCGCCCCTGCC
SP4	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	25	41	-	8.34545	1.82e-05	0.0156	GAAGCCCCGCCTCACGC
SP4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	61	77	-	8.34545	1.82e-05	0.0156	AGCGCCCCGCCCCTGCC
ESR2	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	6	20	-	12.9038	1.82e-05	0.426	GGGTCAAGGAGGCCC
ESR2	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	51	65	+	12.9038	1.82e-05	0.426	GGGTCAAGGAGGCCC
ESR2	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	50	64	-	12.9038	1.82e-05	0.426	GGGTCAAGGAGGCCC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	71	85	+	12.9038	1.82e-05	0.426	AGGGCAGCCAGCTCT
ESR2	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	95	109	+	12.9038	1.82e-05	0.426	GGGTCAAGGAGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	+	13.0909	1.82e-05	0.0548	CGCCCGGAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	+	13.0909	1.82e-05	0.0548	CGCCCGGAGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	22	+	13.0909	1.82e-05	0.0548	TGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	+	13.0909	1.82e-05	0.0548	CGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	+	13.0909	1.82e-05	0.0548	CGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	+	13.0909	1.82e-05	0.0548	CGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	+	13.0909	1.82e-05	0.0548	CGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	+	13.0909	1.82e-05	0.0548	CGCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	56	+	13.0909	1.82e-05	0.0548	CGCCTCAGGGCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	+	13.0909	1.82e-05	0.0548	CGCCCGGAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	7	18	-	13.0909	1.82e-05	0.0548	CGCCTCAGGGCT
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	-	13.0909	1.82e-05	0.0548	CGCCCGGAGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	93	104	-	13.0909	1.82e-05	0.0548	TGCCCCCGGCCC
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	-	13.0909	1.82e-05	0.0548	CGCCCGGAGGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	82	+	12.8269	1.82e-05	0.011	ACCCCACCCCCAGA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	26	40	+	12.9483	1.82e-05	0.00637	GCCCCTCCCTGCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	34	48	+	12.9483	1.82e-05	0.00637	CTCCCTCCCCTTTCT
SP2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	53	67	+	12.9483	1.82e-05	0.00637	GCCCCTCCCTGCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	24	38	-	12.9483	1.82e-05	0.00637	GCTCCTCCTCCTTCT
SP2	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	29	43	-	12.9483	1.82e-05	0.00637	GGCCCGCTCCTCCCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	42	56	-	12.9483	1.82e-05	0.00637	CGCCCACCCCCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	48	62	-	12.9483	1.82e-05	0.00637	GCCCCTCCCTGCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	48	62	-	12.9483	1.82e-05	0.00637	GCCCCTCCCTGCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	70	84	-	12.9483	1.82e-05	0.00637	ACACCGCCCCCCCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	70	84	-	12.9483	1.82e-05	0.00637	ACACCGCCCCCCCGG
SP2	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	75	89	-	12.9483	1.82e-05	0.00637	GCCCCTCCCTGCTCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	52	66	+	11.5902	1.82e-05	0.0361	AGCCCCGCCCTCGTC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	14	34	-	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	32	52	-	12.102	1.82e-05	0.00908	CGAGGAGGACGGTGTGAGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	32	52	-	12.102	1.82e-05	0.00908	CGAGGAGGACGGTGTGAGGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	33	53	-	12.102	1.82e-05	0.00908	AGGGGAGGCCAGAGGAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	33	53	-	12.102	1.82e-05	0.00908	AGGGGAGGCCAGAGGAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	33	53	-	12.102	1.82e-05	0.00908	AGGGGAGGCCAGAGGAAAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	33	53	-	12.102	1.82e-05	0.00908	AGGGGAGGCCAGAGGAAAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	55	75	-	12.102	1.82e-05	0.00908	GGAGGGGGAGGGGGCGGGGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	62	82	-	12.102	1.82e-05	0.00908	GAGGGCGAGGGAGGGAGGGTA
ZNF263	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	65	85	-	12.102	1.82e-05	0.00908	GGAGATGGGCGGGGCGGGGTG
ZNF263	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	30	50	+	12.102	1.82e-05	0.00908	GGAGATGGGCGGGGCGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	37	57	+	12.102	1.82e-05	0.00908	GGGGGAGTCAGGAAATGGAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	49	69	+	12.102	1.82e-05	0.00908	TGGGGAGGCCGGCAGGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	53	73	+	12.102	1.82e-05	0.00908	GAGGGGGGAGGGGGTGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	53	73	+	12.102	1.82e-05	0.00908	GAGGGGGGAGGGGGTGGGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	56	76	+	12.102	1.82e-05	0.00908	GGGGCTGTGGGAGGAAGAAAG
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	93	103	+	13.4909	1.82e-05	0.063	CCCCCCAGGCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	62	81	-	7.85321	1.82e-05	0.044	CCCCCACCAACTCACCTCCC
MSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	+	13.2683	1.82e-05	0.569	ACCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	+	13.2683	1.82e-05	0.569	ACCAGCTGCT
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	8	21	-	11.4426	1.82e-05	0.176	CGCCCCCCACAGGC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	70	83	+	11.4426	1.82e-05	0.176	CGCCCCCCACAGGC
RARA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	22	39	+	-3.12121	1.82e-05	1	CAGGTCAGATGGTCAAAG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	34	47	+	9.30612	1.82e-05	0.365	TGGCCCCTTGTCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	54	67	+	9.30612	1.82e-05	0.365	TGGCCCCAGGCCCA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	54	67	+	9.30612	1.82e-05	0.365	TGGCCCCAGGCCCA
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	68	81	-	9.30612	1.82e-05	0.365	TGGCCCCTTGTCAA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	43	53	-	13.5102	1.82e-05	0.0783	GTCATGTGGTC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	43	53	-	13.5102	1.82e-05	0.0783	GTCATGTGGTC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	56	66	-	13.5102	1.82e-05	0.0783	GTCATGTGGTC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	56	66	-	13.5102	1.82e-05	0.0783	GTCATGTGGTC
USF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	93	103	-	13.5102	1.82e-05	0.0783	ATCATGTGGCT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	93	103	-	13.5102	1.82e-05	0.0783	ATCATGTGGCT
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	19	29	+	13.5102	1.82e-05	0.0783	GTCATGTGGTC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	19	29	+	13.5102	1.82e-05	0.0783	GTCATGTGGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	7	17	-	12.8182	1.83e-05	0.101	ACCCGGAAGAT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	7	17	-	12.8182	1.83e-05	0.101	ACCCGGAAGAT
PRDM1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	11	25	+	12.8	1.83e-05	0.266	GGAAGGAGAAAGGAA
PRDM1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	78	92	+	12.8	1.83e-05	0.266	GGAAGGAGAAAGGAA
PRDM1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	23	37	-	12.8	1.83e-05	0.266	GGAAGGAGAAAGGAA
PRDM1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	90	104	-	12.8	1.83e-05	0.266	GGAAGGAGAAAGGAA
ETV4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.9138	1.83e-05	0.0861	AGCGGAAGTA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	+	12.9483	1.83e-05	0.0537	AGCCCTTGAGGCT
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	56	69	-	9.45918	1.83e-05	0.0605	GGGGCTGAAGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	56	69	-	9.45918	1.83e-05	0.0605	GGGGCTGAAGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	56	69	-	9.45918	1.83e-05	0.0605	GGGGCTGAAGGAGG
BHLHE40	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	13.8269	1.83e-05	0.206	CTCACGTGAT
BHLHE40	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	13.8269	1.83e-05	0.206	CTCACGTGAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	69	79	+	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	69	79	+	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	69	79	+	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	69	79	+	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	89	99	+	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	88	98	-	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	88	98	-	13.4098	1.83e-05	0.0377	CCGGAAGCTCC
ELF1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	52	-	12.3636	1.83e-05	0.0844	ATCCCGGATGTG
ELF1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	63	74	+	12.3636	1.83e-05	0.0844	ATCCCGGATGTG
ELF1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	69	80	+	12.3636	1.83e-05	0.0844	GTGCCGGAAGTA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	11	20	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	11	20	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	11	20	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	11	20	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	23	32	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	23	32	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	36	45	+	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	55	64	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	77	86	+	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	70	79	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	70	79	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	70	79	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	70	79	-	13.5714	1.83e-05	0.00996	GCCACTCCCA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	73	84	+	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	73	84	+	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	2	13	-	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	2	13	-	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	2	13	-	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	2	13	-	11.0408	1.83e-05	0.085	TCTGACGTCAGC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	18	29	-	11.0408	1.83e-05	0.085	TCTGACGTCAGC
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	13	29	+	-9.55714	1.83e-05	0.94	TGCTTTCCCGGAACTTG
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	64	80	-	-9.55714	1.83e-05	0.94	TGCTTTCCCGGAACTTG
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	29	44	+	12.5818	1.83e-05	0.0368	AGGCGCCCACGCCCAT
EGR4	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	31	46	+	12.5818	1.83e-05	0.0368	CCCCTCCCCCGCCACT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	29	44	-	12.5818	1.83e-05	0.0368	AAGCGCCCCCGCCTTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	29	44	-	12.5818	1.83e-05	0.0368	AAGCGCCCCCGCCTTT
EGR4	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	51	66	+	12.5818	1.83e-05	0.0368	CCCCTCCCCCGCCACT
EGR4	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	49	64	-	12.5818	1.83e-05	0.0368	CCCCTCCCCCGCCACT
EGR4	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	69	84	-	12.5818	1.83e-05	0.0368	CCCCTCCCCCGCCACT
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	71	86	-	12.5818	1.83e-05	0.0368	AGGCGCCCACGCCCAT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	10	19	+	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	10	19	+	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	10	19	+	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	10	19	+	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	53	62	-	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	53	62	-	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	53	62	-	13.6714	1.83e-05	0.649	GCATTGTCTT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	53	62	-	13.6714	1.83e-05	0.649	GCATTGTCTT
KLF16	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	14	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	47	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	47	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	47	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	47	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	89	+	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	2	12	-	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	26	36	-	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	68	78	-	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	101	111	-	12.9655	1.83e-05	0.0122	CCCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	101	111	-	12.9655	1.83e-05	0.0122	CCCCCACCCAC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	14	23	+	13.1639	1.83e-05	0.144	GCTCACGTGC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	14	23	+	13.1639	1.83e-05	0.144	GCTCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	94	103	+	13.1639	1.83e-05	0.144	GCTCACGTGC
SP8	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	2	13	-	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	39	+	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	39	+	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	46	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	46	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	46	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	46	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	46	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	25	36	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	25	36	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	66	+	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	66	+	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	67	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	67	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	67	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	67	+	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	49	60	-	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	49	60	-	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	57	68	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	57	68	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	57	68	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	69	80	-	12.9211	1.83e-05	0.0177	GCCCCGCCCCGA
SP8	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	76	87	-	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	113	+	12.9211	1.83e-05	0.0177	GCTCCGCCCACC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	-	13.3103	1.83e-05	0.102	AGCAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	-	13.3103	1.83e-05	0.102	AGCAGCTGTG
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	+	13.3103	1.83e-05	0.102	AGCAGCTGTG
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	13.1714	1.83e-05	0.205	GCCACGTGAT
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	13.1714	1.83e-05	0.205	GCCACGTGAT
MLX	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	13.1714	1.83e-05	0.205	GCCACGTGAT
FOXF2	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	24	37	-	13.5222	1.83e-05	1	CCATGGTAAACAGA
FOXF2	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	78	91	+	13.5222	1.83e-05	1	CCATGGTAAACAGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	94	110	+	12.4286	1.83e-05	0.338	GGTTTAGTGAAAGGGCA
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	94	110	+	12.4286	1.83e-05	0.338	GGTTTAGTGAAAGGGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	94	110	+	12.4286	1.83e-05	0.338	GGTTTAGTGAAAGGGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	94	110	+	12.4286	1.83e-05	0.338	GGTTTAGTGAAAGGGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	94	110	+	12.4286	1.83e-05	0.338	GGTTTAGTGAAAGGGCA
PPARG	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	44	63	-	10.4111	1.83e-05	1	CTGCGTCCCTGTCTCCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	48	60	+	13.0656	1.83e-05	0.359	CTGCCTCCCACCC
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	66	80	-	12.8621	1.83e-05	0.315	TGGACCAAGGTCAGT
Hic1	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	19	27	+	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	92	100	+	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	15	23	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	18	26	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	18	26	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	18	26	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	18	26	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	44	52	-	12.7692	1.83e-05	0.516	GTGCCAGCC
Hic1	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	88	96	-	12.7692	1.83e-05	0.516	GTGCCAGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	10	24	+	12.7091	1.83e-05	0.0974	GACGCCCCGCTGCCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	52	66	+	12.7091	1.83e-05	0.0974	GACGCCCCGCTGCCG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	96	110	+	12.7091	1.83e-05	0.0974	GGCAGCCCGCTGAGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	96	110	+	12.7091	1.83e-05	0.0974	GGCAGCCCGCTGAGA
Rxra	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	17	30	-	7.20732	1.83e-05	0.271	GAGGTCAGAGCTCG
Rxra	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	85	98	+	7.20732	1.83e-05	0.271	GAGGTCAGAGCTCG
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	2	16	+	12.7297	1.83e-05	0.142	CTGGGGGAGAGGGGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	2	16	+	12.7297	1.83e-05	0.142	CTGGGGGAGAGGGGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	2	16	+	12.7297	1.83e-05	0.142	CTGGGGGAGAGGGGG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	2	16	+	12.7297	1.83e-05	0.142	CTGGGGGAGAGGGGG
ERG	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	13.1636	1.83e-05	0.0887	TCCGGAAGTC
ERG	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	13.1636	1.83e-05	0.0887	TCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	13.1636	1.83e-05	0.0887	TCCGGAAGTC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	13.1636	1.83e-05	0.0887	TCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	13.1636	1.83e-05	0.0887	TCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	13.1636	1.83e-05	0.0887	TCCGGAAGTC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	49	+	13.0545	1.83e-05	0.0893	CGCCTCCGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	49	+	13.0545	1.83e-05	0.0893	CGCCTCCGGGCT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	-	13.0545	1.83e-05	0.0893	AGCCTCAGGGCT
RFX5	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	6	21	-	10.0517	1.83e-05	0.126	GGGAGCCATGGTAACT
Rarb	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	24	39	+	1.34483	1.83e-05	0.742	ACAGGTCATCAGGACA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	22	37	-	1.34483	1.83e-05	0.742	ACAGGTCATCAGGACA
PAX1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	72	88	+	9.74545	1.83e-05	0.484	CGCCCCGCATCGTTACC
PAX1	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	4	20	-	9.74545	1.83e-05	0.484	GGCCACGCCTCAGTACG
PAX1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	27	43	-	9.74545	1.83e-05	0.484	CGCCCCGCATCGTTACC
POU2F1	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	12	23	-	12.86	1.83e-05	1	AGTATGCAAAAT
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	42	51	+	12.061	1.83e-05	0.409	TCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	42	51	+	12.061	1.83e-05	0.409	TCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	42	51	+	12.061	1.83e-05	0.409	TCAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	42	51	+	12.061	1.83e-05	0.409	TCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	42	51	+	12.061	1.83e-05	0.409	TCAATCACAG
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	18	32	+	13.383	1.83e-05	0.311	GCAGGTGACGTCACA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	97	-	13.383	1.83e-05	0.311	GCAGGTGACGTCACA
Klf1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	68	78	-	13.2121	1.83e-05	0.0428	GCCCACGCCCT
HEY2	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	-	13.0172	1.83e-05	0.16	GGCACGCGCC
Zfx	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	43	56	+	13.3182	1.83e-05	0.0308	AGAGGCCGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	59	72	-	13.3182	1.83e-05	0.0308	AGAGGCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	59	72	-	13.3182	1.83e-05	0.0308	AGAGGCCGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	59	72	-	13.3182	1.83e-05	0.0308	AGAGGCCGGGCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	9	19	+	13.3462	1.83e-05	0.00741	CCCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	9	19	+	13.3462	1.83e-05	0.00741	CCCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	4	14	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	4	14	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	4	14	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	13	23	-	13.3462	1.83e-05	0.00741	CCCCCGCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	46	56	+	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	43	53	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	54	64	+	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	51	61	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	62	72	+	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	59	69	-	13.3462	1.83e-05	0.00741	CTCCCGCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	66	76	-	13.3462	1.83e-05	0.00741	ACCCCGCCCCA
SP1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	92	102	+	13.3462	1.83e-05	0.00741	CCCCCGCCTTC
SP1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	96	106	-	13.3462	1.83e-05	0.00741	CCCCCGCCTTC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	+	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	+	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	-	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	-	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	+	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	+	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	+	13.9362	1.84e-05	0.169	GCTGACTCACT
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	+	13.9362	1.84e-05	0.169	GCTGACTCACT
Tcf21	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	95	108	-	10.75	1.84e-05	0.557	CTGCCAGCTGGTGT
CEBPG	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	-	12.4286	1.84e-05	0.597	ATTGCGTAAC
CEBPG	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	-	12.4286	1.84e-05	0.597	ATTGCGTAAC
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	+	12.4286	1.84e-05	0.597	ATTGCGTAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	+	12.4286	1.84e-05	0.597	ATTGCGTAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	+	12.4286	1.84e-05	0.597	ATTGCGTAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	+	12.4286	1.84e-05	0.597	ATTGCGTAAC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	45	58	+	12.9014	1.84e-05	0.161	CAAATAAGGAAGTT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	45	58	+	12.9014	1.84e-05	0.161	CAAATAAGGAAGTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	28	42	-	10.2414	1.84e-05	0.0301	CACCGCCCACTCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	28	42	-	10.2414	1.84e-05	0.0301	CACCGCCCACTCGGC
EGR3	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	36	50	-	10.2414	1.84e-05	0.0301	CCCCGCCCCCTCCAT
MAX	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	13.2308	1.84e-05	0.276	CGCACGTGCC
MAX	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	13.2308	1.84e-05	0.276	CGCACGTGCC
MAX	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	13.2308	1.84e-05	0.276	CGCACGTGCC
MAX	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	13.2308	1.84e-05	0.276	CGCACGTGCC
E2F1	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	101	112	+	13.0984	1.84e-05	0.381	AAAGGCGCCAAG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	51	62	+	12.3455	1.84e-05	0.0844	GCTCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	51	62	+	12.3455	1.84e-05	0.0844	GCTCCGGAAGTG
NFYB	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	12	26	-	13.2692	1.84e-05	0.0922	CGAGGAGCCAATGGG
NFYB	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	26	40	-	13.2692	1.84e-05	0.0922	GAAGGGACCAATCAT
NFYB	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	75	89	+	13.2692	1.84e-05	0.0922	GAAGGGACCAATCAT
NFYB	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	89	103	+	13.2692	1.84e-05	0.0922	CGAGGAGCCAATGGG
Znf423	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	34	48	-	8.86517	1.84e-05	0.175	GCAACCCAGAGGGCA
Znf423	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	67	81	+	8.86517	1.84e-05	0.175	GCAACCCAGAGGGCA
XBP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	86	99	-	12.5385	1.84e-05	0.446	TAGTCCGCGTCAGC
XBP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	86	99	-	12.5385	1.84e-05	0.446	TAGTCCGCGTCAGC
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	29	43	+	12.4394	1.84e-05	0.219	GAGCGTGAGTTGGCA
SP2	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	33	47	+	12.931	1.84e-05	0.00642	ACCCCGCCTACCACG
SP2	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	60	74	+	12.931	1.84e-05	0.00642	ACCCCGCCTACCACG
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	-	13.4848	1.84e-05	0.585	CACACGTGTT
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	+	13.4848	1.84e-05	0.585	CACACGTGTT
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	+	13.4848	1.84e-05	0.585	CACACGTGTT
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	+	13.4848	1.84e-05	0.585	CACACGTGTT
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	+	13.4848	1.84e-05	0.585	CACACGTGTT
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	+	13.4848	1.84e-05	0.585	CACACGTGTT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	13.3103	1.84e-05	0.076	GCCGGAAGCG
Ascl2	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	51	-	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	112	-	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	42	51	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	73	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	73	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	73	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	73	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	86	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	86	+	13.2143	1.84e-05	0.166	GCCAGCTGCT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	30	43	-	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	42	55	-	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	42	55	-	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	59	72	-	12.8077	1.84e-05	0.011	ACCCCTCCTCCTCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	65	78	-	12.8077	1.84e-05	0.011	CAGCCGCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	65	78	-	12.8077	1.84e-05	0.011	CAGCCGCCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	65	78	-	12.8077	1.84e-05	0.011	CAGCCGCCGCCGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	65	78	-	12.8077	1.84e-05	0.011	CAGCCGCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	99	112	+	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	99	112	+	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	99	112	+	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	99	112	+	12.8077	1.84e-05	0.011	TGCCCGCCCACAGC
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	15	28	-	5.56364	1.84e-05	0.387	GGGTTCAAAGCTCA
RXRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	15	28	-	5.56364	1.84e-05	0.387	GGGTTCAAAGCTCA
RXRB	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	87	100	+	5.56364	1.84e-05	0.387	GGGTTCAAAGCTCA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	62	73	+	13.1818	1.84e-05	0.109	CCGCGTCCGGGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	62	73	+	13.1818	1.84e-05	0.109	CCGCGTCCGGGG
SP4	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	25	41	-	8.30909	1.84e-05	0.0158	GAGGCCCCGCCGACGCC
SP4	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	74	90	+	8.30909	1.84e-05	0.0158	GAGGCCCCGCCGACGCC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	13	23	+	13.4364	1.84e-05	0.0419	CAGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	13	23	+	13.4364	1.84e-05	0.0419	CAGCTTCCGGG
ELK4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	31	41	+	13.4364	1.84e-05	0.0419	CCTCTTCCGGG
ELK4	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	92	102	-	13.4364	1.84e-05	0.0419	CAGCTTCCGGG
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	36	46	+	13.3878	1.84e-05	0.672	ATTTCATAATC
CEBPA	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	69	79	-	13.3878	1.84e-05	0.672	ATTTCATAATC
KLF16	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	31	41	+	12.9483	1.84e-05	0.0122	GCCACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	16	26	-	12.9483	1.84e-05	0.0122	GCCACACCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	74	84	-	12.9483	1.84e-05	0.0122	GCCACACCTCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	12.5102	1.84e-05	0.0944	CCCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	12.5102	1.84e-05	0.0944	CCCACGTGCC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	12.5102	1.84e-05	0.0944	CCCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	12.5102	1.84e-05	0.0944	CCCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	12.5102	1.84e-05	0.0944	CCCACGTGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	86	106	-	12.0816	1.84e-05	0.00917	AAAAGAGAAGGGCGGGGAAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	88	108	-	12.0816	1.84e-05	0.00917	TAGGGATTGGGGTGAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	63	83	+	12.0816	1.84e-05	0.00917	GAGTGAGAAGAAGTGGGAGGA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	69	89	+	11.9677	1.84e-05	0.139	GCCAAGTTTCTGTTCCCTTTC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	27	41	+	12.7207	1.84e-05	0.142	GTTGGCGAGAGGCCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	27	41	+	12.7207	1.84e-05	0.142	GTTGGCGAGAGGCCA
EGR2	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	27	37	-	12.2414	1.84e-05	0.0636	CCGCCCGCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	54	64	+	12.2414	1.84e-05	0.0636	CCGCCCGCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	51	61	-	12.2414	1.84e-05	0.0636	CCGCCCGCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	78	88	+	12.2414	1.84e-05	0.0636	CCGCCCGCGCG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	43	54	+	12.8033	1.85e-05	0.0971	CGCCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	72	-	12.8033	1.85e-05	0.0971	CGCCCGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	72	-	12.8033	1.85e-05	0.0971	CGCCCGGAAGTT
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	27	40	+	10.7368	1.85e-05	0.557	GCGACAGCTGGAGA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	23	36	-	10.7368	1.85e-05	0.557	GCGACAGCTGGAGA
Tcf21	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	79	92	+	10.7368	1.85e-05	0.557	GCGACAGCTGGAGA
Tcf21	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	75	88	-	10.7368	1.85e-05	0.557	GCGACAGCTGGAGA
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	22	-	13.3371	1.85e-05	0.99	TTACCAGCTGTT
NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	+	11.7551	1.85e-05	0.184	TGTGACTCATC
NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	-	11.7551	1.85e-05	0.184	TGTGACTCATC
NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	+	11.7551	1.85e-05	0.184	TGTGACTCATC
NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	-	11.7551	1.85e-05	0.184	TGTGACTCATC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	16	30	+	12.8448	1.85e-05	0.315	GGGGTCAGGGCCAGG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	16	30	+	12.8448	1.85e-05	0.315	GGGGTCAGGGCCAGG
Nr5a2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	85	99	-	12.8448	1.85e-05	0.315	GGGGTCAGGGCCAGG
MEF2C	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	70	84	-	13.0678	1.85e-05	0.496	GAACTGAAAATAGCT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	14	28	+	11.3	1.85e-05	0.0984	CGCCCCCCCTCGCGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	28	42	-	11.3	1.85e-05	0.0984	CGCCCCCCCTCGCGC
NR3C2	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	+	9.51064	1.85e-05	0.905	CTGTACATGATGTTCAC
FEV	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FEV	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	13.1923	1.85e-05	0.0872	TCCGGAAGTC
FLI1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	13.1064	1.85e-05	0.0896	GCCGGAAGTA
FLI1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	13.1064	1.85e-05	0.0896	GCCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	13.1064	1.85e-05	0.0896	GCCGGAAGTA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	13.1064	1.85e-05	0.0896	GCCGGAAGTA
FLI1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	13.1064	1.85e-05	0.0896	GCCGGAAGTA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	74	87	-	9.42857	1.85e-05	0.0605	GAGGCGGTGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	74	87	-	9.42857	1.85e-05	0.0605	GAGGCGGTGGGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	-	13.1538	1.85e-05	0.0703	CGCCCCGGGCA
Myog	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	66	76	-	13.7959	1.85e-05	0.106	AACAGCTGCTT
ESRRB	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	58	68	-	12.1724	1.85e-05	0.867	CGAAGGTCACA
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	47	57	+	12.1724	1.85e-05	0.867	CGAAGGTCACA
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	47	57	+	12.1724	1.85e-05	0.867	CGAAGGTCACA
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	47	57	+	12.1724	1.85e-05	0.867	CGAAGGTCACA
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	47	57	+	12.1724	1.85e-05	0.867	CGAAGGTCACA
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	47	57	+	12.1724	1.85e-05	0.867	CGAAGGTCACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	42	52	-	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	42	52	-	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	42	52	-	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	42	52	-	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	1	11	+	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	1	11	+	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	1	11	+	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	1	11	+	13.4898	1.85e-05	0.0783	CTCATGTGATC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	1	11	+	13.4898	1.85e-05	0.0783	CTCATGTGATC
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	67	80	+	11.4394	1.85e-05	0.252	GGTGTGAAGGGTCA
NFIC::TLX1	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	32	45	-	9.26531	1.85e-05	0.365	TGGCAGCACGCCGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	54	67	+	11.4098	1.85e-05	0.176	TCCCTCCCGCGAGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	54	67	+	11.4098	1.85e-05	0.176	TCCCTCCCGCGAGG
GLIS2	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	48	61	-	11.4098	1.85e-05	0.176	TCCCTCCCGCGAGG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	81	91	+	13.449	1.85e-05	0.185	GTGCTGGGAAT
STAT3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	81	91	+	13.449	1.85e-05	0.185	GTGCTGGGAAT
SP8	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	5	16	+	12.9079	1.85e-05	0.0177	GCCACGCCTCTT
SP8	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	26	37	-	12.9079	1.85e-05	0.0177	GCCCCACCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	78	89	+	12.9079	1.85e-05	0.0177	GCCCCACCCCCA
SP8	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	99	110	-	12.9079	1.85e-05	0.0177	GCCACGCCTCTT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	103	114	-	12.9079	1.85e-05	0.0177	GCCCCACCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	103	114	-	12.9079	1.85e-05	0.0177	GCCCCACCCCCA
ELF4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	18	29	-	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	40	51	-	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	40	51	-	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	40	51	-	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	40	51	-	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
ELF4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	86	97	+	12.1967	1.85e-05	0.073	TTCCCGGAAGGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	16	30	+	11.5574	1.85e-05	0.0361	AGCCCCGCCCTGAAT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	16	30	+	11.5574	1.85e-05	0.0361	AGCCCCGCCCTGAAT
Gmeb1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	11	27	+	11.6711	1.85e-05	0.537	CAGGGGGCGTCAGACCG
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	11	27	+	11.6711	1.85e-05	0.537	CAGGGGGCGTCAGACCG
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	78	90	-	11.8485	1.85e-05	0.225	TGGGAATGTCCCT
MYF6	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	-	13.2424	1.85e-05	1	ACCAGCTGTT
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	29	38	+	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	29	38	+	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	40	49	+	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	3	12	-	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	3	12	-	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	66	75	-	12.9899	1.85e-05	0.23	GGGATTTTCC
REL	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	77	86	-	12.9899	1.85e-05	0.23	GGGATTTTCC
E2F4	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	22	32	-	13.7241	1.85e-05	0.0425	AGGCGGGAGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	83	93	+	13.7241	1.85e-05	0.0425	AGGCGGGAGCG
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	15	25	-	13.102	1.85e-05	0.285	AACCACATGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	+	12.9138	1.85e-05	0.0537	TGCCGGGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	+	12.9138	1.85e-05	0.0537	TGCCGGGGGGGCG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	71	80	+	12.9174	1.85e-05	0.0369	ACCCCCCCCA
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	71	80	+	12.9174	1.85e-05	0.0369	ACCCCCCCCA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	23	33	-	13.7959	1.85e-05	0.135	GAGTGAGTCAC
HOXA10	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	45	55	-	12.1132	1.86e-05	1	TGTAATAAAAT
HOXA10	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	45	55	-	12.1132	1.86e-05	1	TGTAATAAAAT
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	74	+	11.0204	1.86e-05	0.085	GCTTACGTCATG
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	97	+	11.0204	1.86e-05	0.085	GCTTACGTCATG
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	29	-	11.0204	1.86e-05	0.085	GCTTACGTCATG
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	52	-	11.0204	1.86e-05	0.085	GCTTACGTCATG
NR2C2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	4	18	-	12.1857	1.86e-05	0.0911	CGGGGGCAGGGGCGG
NR2C2	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	17	31	-	12.1857	1.86e-05	0.0911	CGGGGGCAGGGGCGG
NR2C2	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	46	60	+	12.1857	1.86e-05	0.0911	CGGGGGCAGGGGCGG
NR2C2	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	55	69	-	12.1857	1.86e-05	0.0911	CGGGGGCAGGGGCGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	97	111	+	12.1857	1.86e-05	0.0911	CGGGGGCAGGGGCGG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	29	39	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	29	39	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	29	39	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	39	49	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	39	49	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	39	49	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	39	49	+	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	43	53	+	13.3269	1.86e-05	0.00743	GGCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	34	44	-	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	34	44	-	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	34	44	-	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	34	44	-	13.3269	1.86e-05	0.00743	TGCCCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	57	67	+	13.3269	1.86e-05	0.00743	GGCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	57	67	+	13.3269	1.86e-05	0.00743	GGCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	57	67	+	13.3269	1.86e-05	0.00743	GGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	57	67	+	13.3269	1.86e-05	0.00743	GGCCCGCCCTC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	26	40	+	13.3617	1.86e-05	0.311	CGCGGTGACGTCACC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	89	-	13.3617	1.86e-05	0.311	CGCGGTGACGTCACC
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	-	11.0367	1.86e-05	0.623	GGACGGCTGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	-	11.0367	1.86e-05	0.623	GGACGGCTGTCA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	51	65	-	12.7117	1.86e-05	0.142	CTGGGGGAAAGGGTG
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	92	106	-	12.7117	1.86e-05	0.142	CTGGGGGAAAGGGTG
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	9	23	+	12.7117	1.86e-05	0.142	CTGGGGGAAAGGGTG
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	50	64	+	12.7117	1.86e-05	0.142	CTGGGGGAAAGGGTG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	32	42	-	13.8776	1.86e-05	0.135	GGCAGCTGGAC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	80	90	-	13.8776	1.86e-05	0.135	GGCAGCTGGAC
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	80	90	-	13.8776	1.86e-05	0.135	GGCAGCTGGAC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	80	90	-	13.8776	1.86e-05	0.135	GGCAGCTGGAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	9	19	-	14	1.86e-05	0.138	GTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	9	19	-	14	1.86e-05	0.138	GTGTGACTCAG
FOSL2	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	28	38	-	14	1.86e-05	0.138	GTATGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	44	54	+	14	1.86e-05	0.138	GTGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	44	54	+	14	1.86e-05	0.138	GTGTGACTCAG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	58	68	-	14	1.86e-05	0.138	AAATGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	73	83	-	14	1.86e-05	0.138	AAGTGACTCAG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	87	97	+	14	1.86e-05	0.138	GTGTGACTCAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	60	77	-	-8.11842	1.86e-05	0.0315	GGGAGGAGGGGAGACAAT
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	54	65	-	12.8276	1.86e-05	0.33	GCGCCCACCCAC
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	54	65	-	12.8276	1.86e-05	0.33	GCGCCCACCCAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	49	69	+	11.9516	1.86e-05	0.139	CTTTTTTTTCTTTTTTTTTTT
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	77	89	-	12.4697	1.86e-05	0.494	GTTAAACATTACC
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	77	89	-	12.4697	1.86e-05	0.494	GTTAAACATTACC
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	69	81	+	13.3469	1.86e-05	0.301	AGGATGACGTCAG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	69	81	+	13.3469	1.86e-05	0.301	AGGATGACGTCAG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	69	81	+	13.3469	1.86e-05	0.301	AGGATGACGTCAG
JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	69	81	+	13.3469	1.86e-05	0.301	AGGATGACGTCAG
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	69	81	+	13.3469	1.86e-05	0.301	AGGATGACGTCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	32	46	+	12.9138	1.86e-05	0.00648	GGCCCTCCTTCTGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	82	96	-	12.9138	1.86e-05	0.00648	CGCCCGCCCCGACGC
RXRB	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	65	78	+	5.52727	1.86e-05	0.387	TGGGTGAGAGGTTA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	-	12.9388	1.86e-05	0.0857	CGCCCAAGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	+	12.9388	1.86e-05	0.0857	CGCCCAAGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	+	12.9388	1.86e-05	0.0857	CGCCCGTGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	+	12.9388	1.86e-05	0.0857	CGCCCGTGGGCA
CTCF	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	18	36	+	11.541	1.86e-05	0.0825	GGGCCTGCAGATGACGTCA
CTCF	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	31	49	-	11.541	1.86e-05	0.0825	GGGCCTGCAGATGACGTCA
CTCF	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	79	97	-	11.541	1.86e-05	0.0825	GGGCCTGCAGATGACGTCA
RELA	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	81	90	+	13.5918	1.86e-05	0.18	GGGAGTTCCC
SP3	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	2	12	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	35	45	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	45	55	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	45	55	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	46	56	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	75	85	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	80	90	+	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	6	16	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	7	17	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	15	25	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	21	31	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	25	35	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	27	37	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	30	40	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	32	42	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	33	43	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	49	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	62	72	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
SP3	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	103	113	-	12.8537	1.86e-05	0.0121	CCCACCCCCAC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	69	83	+	10.2069	1.86e-05	0.0301	CCCCGCCCCCCCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	90	104	-	10.2069	1.86e-05	0.0301	TACCGCCGCCGCGCT
EGR1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	2	15	+	12.7885	1.86e-05	0.0111	CTCCTGCCCCCTCT
EGR1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	17	30	+	12.7885	1.86e-05	0.0111	CGCTCTCCCCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	85	98	-	12.7885	1.86e-05	0.0111	CGCTCTCCCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	85	98	-	12.7885	1.86e-05	0.0111	CGCTCTCCCCCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	85	98	-	12.7885	1.86e-05	0.0111	CGCTCTCCCCCGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	85	98	-	12.7885	1.86e-05	0.0111	CGCTCTCCCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	97	110	-	12.7885	1.86e-05	0.0111	TGCCCGCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	97	110	-	12.7885	1.86e-05	0.0111	TGCCCGCCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	100	113	-	12.7885	1.86e-05	0.0111	CTCCTGCCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	100	113	-	12.7885	1.86e-05	0.0111	CTCCTGCCCCCTCT
LEF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	32	-	11.7581	1.86e-05	1	AGAGATCAAAGTTCG
LEF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	32	-	11.7581	1.86e-05	1	AGAGATCAAAGTTCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	28	38	+	12.7818	1.86e-05	0.0101	ACGCCTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	28	38	+	12.7818	1.86e-05	0.0101	ACGCCTGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	28	38	+	12.7818	1.86e-05	0.0101	ACGCCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	28	38	+	12.7818	1.86e-05	0.0101	ACGCCTGCCCA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	62	75	+	7.54545	1.86e-05	0.127	AGAAAGGGGAAGGC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	83	96	-	7.54545	1.86e-05	0.127	AGAAAGGGGAAGGC
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	53	67	-	13.2113	1.86e-05	0.341	GGTAAGTAAACAACG
GLIS3	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	16	29	+	8.06061	1.86e-05	0.379	CGCCCCCCACCTCG
SP4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	50	66	-	8.27273	1.86e-05	0.0159	CACGCCCCGCCTCTGCC
RFX2	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	-	9.67143	1.86e-05	0.122	CGTCGCCATGGCGCCA
RFX2	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	+	9.67143	1.86e-05	0.122	CGTCGCCATGGCGCCA
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr10:135061353..135061467,-__114.1.0.0	29	43	+	12.8276	1.86e-05	0.315	GCGGCCAAGGTCTCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	41	54	+	11.6515	1.86e-05	0.253	GCGCCACCTCATCG
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	41	54	+	11.6515	1.86e-05	0.253	GCGCCACCTCATCG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.0.0	75	88	+	11.6515	1.86e-05	0.253	GCGCCACCTCATCG
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.1.0	75	88	+	11.6515	1.86e-05	0.253	GCGCCACCTCATCG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	3	17	+	11.541	1.86e-05	0.0361	GGCCCCGCCCCAGGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	3	17	+	11.541	1.86e-05	0.0361	GGCCCCGCCCCAGGT
Klf12	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	98	112	-	11.541	1.86e-05	0.0361	GGCCCCGCCCCAGGT
PRDM1	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	51	65	+	12.7636	1.86e-05	0.266	AAGTAGAGAAAGTGG
PRDM1	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	81	95	+	12.7636	1.86e-05	0.266	AAGTAGAGAAAGTGG
PRDM1	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	20	34	-	12.7636	1.86e-05	0.266	AAGTAGAGAAAGTGG
Myb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.1.0	88	97	-	13.8525	1.86e-05	0.823	TAAACTGTCA
Myb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.0.0	88	97	-	13.8525	1.86e-05	0.823	TAAACTGTCA
NR3C1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	-	9.40816	1.86e-05	0.991	GGGGAGACAATGTTCTT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	45	65	-	12.0612	1.86e-05	0.00924	TGGGGTGGGGGGGAAGAGGAT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	45	65	-	12.0612	1.86e-05	0.00924	TGGGGTGGGGGGGAAGAGGAT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	45	65	-	12.0612	1.86e-05	0.00924	TGGGGTGGGGGGGAAGAGGAT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	48	68	-	12.0612	1.86e-05	0.00924	GAGGCGGGTGGGGGAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	62	82	-	12.0612	1.86e-05	0.00924	GGTGAAGAGGAGGCAGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	62	82	-	12.0612	1.86e-05	0.00924	GGTGAAGAGGAGGCAGGGGGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	33	53	+	12.0612	1.86e-05	0.00924	GGTGAAGAGGAGGCAGGGGGC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	55	64	+	13.3091	1.86e-05	0.0969	GCCACGCGCC
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	54	65	-	13.1154	1.87e-05	0.118	CAGCATGGCCGC
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	54	65	-	13.1154	1.87e-05	0.118	CAGCATGGCCGC
YY1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	101	112	+	13.1154	1.87e-05	0.118	CAGCATGGCCGC
ETV2	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	22	32	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	26	36	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	57	67	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	57	67	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	65	75	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	65	75	+	13.2131	1.87e-05	0.131	CACCGGAAGTC
ETV2	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	50	-	13.2131	1.87e-05	0.131	CACCGGAAGTC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	85	95	-	13.7755	1.87e-05	0.106	GGCAGCTGGTA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	85	95	-	13.7755	1.87e-05	0.106	GGCAGCTGGTA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	31	42	-	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	31	42	-	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	31	42	-	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	33	44	-	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	33	44	-	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	34	45	-	12.8947	1.87e-05	0.0177	GCCACCCCCCAT
SP8	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	70	81	+	12.8947	1.87e-05	0.0177	GCCACCCCCCAT
SP8	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	82	+	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	82	+	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
SP8	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	84	+	12.8947	1.87e-05	0.0177	GCACCGCCCCCA
ELF5	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	42	-	12.7636	1.87e-05	0.101	CCCCGGAAGTA
HNF4G	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	23	37	+	12.9231	1.87e-05	0.308	TGTGGACAAAGTCCT
HNF4G	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	78	92	-	12.9231	1.87e-05	0.308	TGTGGACAAAGTCCT
Alx1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	66	82	-	13.1688	1.87e-05	1	TCTGTTAATTAATCTTC
FOXP2	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	34	44	-	13.7879	1.87e-05	0.77	CTGTAAACAGG
FOXP2	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	71	81	+	13.7879	1.87e-05	0.77	CTGTAAACAGG
Zfx	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	30	43	+	13.2879	1.87e-05	0.031	GCCTCTCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	40	53	+	13.2879	1.87e-05	0.031	TCCTCCCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	40	53	+	13.2879	1.87e-05	0.031	TCCTCCCGGGCCTC
Zfx	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	62	75	-	13.2879	1.87e-05	0.031	TCCTCCCGGGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	72	85	-	13.2879	1.87e-05	0.031	GCCTCTCCGGCCTC
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	94	108	-	12.7027	1.87e-05	0.142	GTAGTCCAAAGGCCA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	23	37	+	12.803	1.87e-05	0.0695	GGCTCGCGGGGCCCG
EGR4	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	16	31	-	12.5455	1.87e-05	0.0372	CCCCGCCCCCACCTTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	63	78	+	12.5455	1.87e-05	0.0372	CCACGCCCCTGCGCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	63	78	+	12.5455	1.87e-05	0.0372	CCACGCCCCTGCGCTC
Creb5	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	-	12.2727	1.87e-05	0.11	AATTACGTAATG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	-	13.0656	1.87e-05	0.0554	TCCCCTTCGGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	+	13.0656	1.87e-05	0.0554	TCCCCTTCGGGCC
NR2F1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	14	26	-	13.4286	1.87e-05	0.367	CGGGGGTCACGTG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	44	53	-	10.8462	1.87e-05	0.0721	GCCACGCGTG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	44	53	-	10.8462	1.87e-05	0.0721	GCCACGCGTG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	59	+	6.44681	1.87e-05	0.374	AGGGCCAAAGGTTG
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	59	+	6.44681	1.87e-05	0.374	AGGGCCAAAGGTTG
RXRG	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	103	-	6.44681	1.87e-05	0.374	AGGGCCAAAGGTTG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	+	13.9091	1.87e-05	0.144	TGTGACTCACC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	-	13.9091	1.87e-05	0.144	TGTGACTCACC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	57	71	-	12.6727	1.87e-05	0.0974	GGCCGCCCGCGGGTG
PITX3	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	5	13	-	12.3462	1.87e-05	1	ACTAATCCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.2143	1.87e-05	0.0768	GCCGGAAGTC
PKNOX2	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	+	7.57377	1.87e-05	0.598	TGGCTGCTGTCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	66	76	+	12.7455	1.87e-05	0.0101	GCGCCCGCCCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	77	87	+	12.7455	1.87e-05	0.0101	GCGCCCGCCCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	71	81	-	12.7455	1.87e-05	0.0101	GCGCCCGCCCA
YY2	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	41	51	-	13.2121	1.87e-05	0.269	GGCCGCCATGT
YY2	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	64	74	+	13.2121	1.87e-05	0.269	GGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	85	95	-	13.2121	1.87e-05	0.269	GGCCGCCATGT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	85	95	-	13.2121	1.87e-05	0.269	GGCCGCCATGT
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	85	95	-	13.2121	1.87e-05	0.269	GGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	85	95	-	13.2121	1.87e-05	0.269	GGCCGCCATGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	13	-	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	13	-	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	13	-	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	13	-	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	28	38	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	28	38	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	28	38	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	28	38	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	28	38	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	78	88	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	78	88	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	78	88	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
ELK4	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	102	112	+	13.4	1.87e-05	0.0419	GCGCTTCCGCT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	21	35	-	12.4091	1.87e-05	0.219	TTGCATGAGTCAGCC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	37	51	+	12.4091	1.87e-05	0.219	TTGCATGAGTCAGCC
SPI1	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	22	35	+	7.52727	1.87e-05	0.127	AAATACAGGAACTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	58	71	+	7.52727	1.87e-05	0.127	AAAAAAGGGAACTC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	58	71	+	7.52727	1.87e-05	0.127	AAAAAAGGGAACTC
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	80	93	-	7.52727	1.87e-05	0.127	AAATACAGGAACTT
SPI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	80	93	-	7.52727	1.87e-05	0.127	AAATACAGGAACTT
SPI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	80	93	-	7.52727	1.87e-05	0.127	AAATACAGGAACTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	80	93	-	7.52727	1.87e-05	0.127	AAATACAGGAACTT
SP4	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	11	27	+	8.25455	1.87e-05	0.016	TCCACCCCGCCTCCTTC
SP4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	18	34	-	8.25455	1.87e-05	0.016	CAGGACCCCCCCCCCCG
SP4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	81	97	+	8.25455	1.87e-05	0.016	CAGGACCCCCCCCCCCG
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	26	36	-	13.4808	1.87e-05	0.247	GAAATGAGTAA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	79	89	+	13.4808	1.87e-05	0.247	GAAATGAGTAA
EGR3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	12	26	+	10.1897	1.87e-05	0.0301	CGCCGCCGCCGCAGT
EGR3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	89	103	-	10.1897	1.87e-05	0.0301	CGCCGCCGCCGCAGT
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	12.931	1.87e-05	0.188	ACCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	12.931	1.87e-05	0.188	ACCACGTGAC
Stat4	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	65	78	-	13.4138	1.87e-05	0.188	CTTCTGAGAAGGGC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	16	29	+	12.4571	1.87e-05	0.206	CTGCCACGTGATTT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	16	29	+	12.4571	1.87e-05	0.206	CTGCCACGTGATTT
SPDEF	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	26	36	+	13	1.87e-05	0.206	AACCGGAAGTC
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	89	-	13	1.87e-05	0.206	AACCGGAAGTC
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	89	-	13	1.87e-05	0.206	AACCGGAAGTC
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	33	-	11.4091	1.87e-05	0.252	GGGTGCAAAGGTGA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	33	-	11.4091	1.87e-05	0.252	GGGTGCAAAGGTGA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	6	16	-	13.3607	1.87e-05	0.0383	CAGGAAGTGGG
Gabpa	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	50	60	+	13.3607	1.87e-05	0.0383	CAGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	62	72	+	13.3607	1.87e-05	0.0383	CAGGAAGTGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	62	72	+	13.3607	1.87e-05	0.0383	CAGGAAGTGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	80	93	+	9.38776	1.87e-05	0.0605	GAGGCCGACGGGGC
MYBL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	20	34	-	12.0328	1.88e-05	1	AGCCGTTCACCTGCT
MYBL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	20	34	-	12.0328	1.88e-05	1	AGCCGTTCACCTGCT
IRF9	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	52	66	+	2.81818	1.88e-05	0.475	AAAGAAACCGATTCC
IRF9	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	52	66	+	2.81818	1.88e-05	0.475	AAAGAAACCGATTCC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	1	13	+	12.7286	1.88e-05	0.729	CAGCCAGATGCTT
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	1	13	+	12.7286	1.88e-05	0.729	CAGCCAGATGCTT
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	13	22	-	13.459	1.88e-05	0.389	TGCACCTGTA
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	13	22	-	13.459	1.88e-05	0.389	TGCACCTGTA
ID4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	46	55	-	13.459	1.88e-05	0.389	TGCACCTGTA
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	46	55	-	13.459	1.88e-05	0.389	TGCACCTGTA
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	87	96	-	13.459	1.88e-05	0.389	TGCACCTGCA
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	87	96	-	13.459	1.88e-05	0.389	TGCACCTGCA
SPIC	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	69	-	12.8732	1.88e-05	0.163	CTAAACAGGAAGTG
SP2	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	10	24	+	12.8966	1.88e-05	0.00653	TCCCCACCCTCCCTC
SP2	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	32	46	+	12.8966	1.88e-05	0.00653	GTCCCACCCTTTTCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	47	61	+	12.8966	1.88e-05	0.00653	AACCCGCCTCCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	47	61	+	12.8966	1.88e-05	0.00653	AACCCGCCTCCCCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	70	84	+	12.8966	1.88e-05	0.00653	GCCCCGCCTTACTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	53	67	-	12.8966	1.88e-05	0.00653	GAACCGCCCCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	53	67	-	12.8966	1.88e-05	0.00653	GAACCGCCCCCTCCC
SP2	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	69	83	-	12.8966	1.88e-05	0.00653	GTCCCACCCTTTTCG
SP2	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	91	105	-	12.8966	1.88e-05	0.00653	TCCCCACCCTCCCTC
RREB1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	40	59	-	7.76147	1.88e-05	0.0448	CCCCCTCCCTCCCCCTTCCC
RREB1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	75	+	7.76147	1.88e-05	0.0448	CCCCCTCCCTCCCCCTTCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	11	24	+	11.931	1.88e-05	0.0215	CGACCCGCCCCTCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	11	24	+	11.931	1.88e-05	0.0215	CGACCCGCCCCTCA
KLF14	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	32	45	+	11.931	1.88e-05	0.0215	GGCCACGCCCCGGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	23	36	-	11.931	1.88e-05	0.0215	GATCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	23	36	-	11.931	1.88e-05	0.0215	GATCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	65	78	+	11.931	1.88e-05	0.0215	TCACCCGCCCCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	65	78	+	11.931	1.88e-05	0.0215	TCACCCGCCCCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	65	78	+	11.931	1.88e-05	0.0215	TCACCCGCCCCCTT
KLF14	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	70	83	-	11.931	1.88e-05	0.0215	GGCCACGCCCCGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	28	46	+	12.7097	1.88e-05	0.137	CGACGCCGCCGGGCGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	9	21	-	13.0492	1.88e-05	0.064	TGCCCAGGGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	9	21	-	13.0492	1.88e-05	0.064	TGCCCAGGGGGCC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	56	69	+	9.37755	1.88e-05	0.0605	GGTGCTGAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	56	69	+	9.37755	1.88e-05	0.0605	GGTGCTGAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	95	108	+	9.37755	1.88e-05	0.0605	GGTGCTGAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	95	108	+	9.37755	1.88e-05	0.0605	GGTGCTGAAGGGGG
ELF1	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	37	48	+	12.2909	1.88e-05	0.0844	GACCCGGAAACA
ELF1	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	78	-	12.2909	1.88e-05	0.0844	GACCCGGAAACA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	9	20	-	12.8816	1.88e-05	0.0178	ACCCCCCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	9	20	-	12.8816	1.88e-05	0.0178	ACCCCCCCCCCA
ZIC1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	39	52	-	10.0213	1.88e-05	0.0959	CCGCCCCCGCTGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	61	74	-	10.0213	1.88e-05	0.0959	GCGCCCCTGCTGAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	1	14	+	10.0213	1.88e-05	0.0959	CCGCCCCCGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	1	14	+	10.0213	1.88e-05	0.0959	CCGCCCCCGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	3	16	+	10.0213	1.88e-05	0.0959	GCGCCCCTGCTGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	3	16	+	10.0213	1.88e-05	0.0959	GCGCCCCTGCTGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	41	54	+	10.0213	1.88e-05	0.0959	GCGCCCCTGCTGAG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	41	54	+	10.0213	1.88e-05	0.0959	GCGCCCCTGCTGAG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	63	76	+	10.0213	1.88e-05	0.0959	CCGCCCCCGCTGCG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	43	57	-	10.8421	1.88e-05	0.163	ACGCTGAGGCAGCGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	76	93	-	-8.26316	1.88e-05	0.0315	GGAAAAAAGGCAAGCAAA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	76	+	12.7692	1.88e-05	0.0112	ACCCCTCCCACTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	101	114	-	12.7692	1.88e-05	0.0112	CCCCAGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	101	114	-	12.7692	1.88e-05	0.0112	CCCCAGCCGCCGCC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	11	24	-	13.5385	1.88e-05	0.159	AGGTGCTGAGTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	11	24	-	13.5385	1.88e-05	0.159	AGGTGCTGAGTCAG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	89	102	+	13.2727	1.88e-05	0.0312	TGCAGCTGGGCCTG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	36	46	-	13.7069	1.88e-05	0.0429	TCGCGGGAACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	36	46	-	13.7069	1.88e-05	0.0429	TCGCGGGAACG
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	56	70	-	11.7377	1.88e-05	0.291	ATGAGTGAGCAAAGC
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	93	107	-	11.7377	1.88e-05	0.291	ATGAGTGAGCAAAGC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	93	107	-	11.7377	1.88e-05	0.291	ATGAGTGAGCAAAGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	18	30	-	13.7143	1.88e-05	0.12	CACAGCTGCCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	18	30	-	13.7143	1.88e-05	0.12	CACAGCTGCCCCA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	18	30	-	13.7143	1.88e-05	0.12	CACAGCTGCCCCA
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	18	30	-	13.7143	1.88e-05	0.12	CACAGCTGCCCCA
Myod1	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	91	103	-	13.7143	1.88e-05	0.12	TTCAGCTGTCCTC
Myod1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	94	106	-	13.7143	1.88e-05	0.12	CCCAGCTGCTGGC
TP53	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	25	42	+	9.93878	1.89e-05	0.863	GGCCTGCCTCTGCAAGTC
TP53	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.0.0	25	42	+	9.93878	1.89e-05	0.863	GGCCTGCCTCTGCAAGTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	76	93	-	-8.27632	1.89e-05	0.0315	GAAAAGAAGGCAAGCAAA
EGR3	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	1	15	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	5	19	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	5	19	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	5	19	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	5	19	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	29	43	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	65	79	+	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	100	114	-	10.1724	1.89e-05	0.0301	CCCCGCCCCCACGGC
Klf1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	34	44	+	13.197	1.89e-05	0.0428	AACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	41	51	-	13.197	1.89e-05	0.0428	GGCCACACCTA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	41	51	-	13.197	1.89e-05	0.0428	GGCCACACCTA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	41	51	-	13.197	1.89e-05	0.0428	GGCCACACCTA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	41	51	-	13.197	1.89e-05	0.0428	GGCCACACCTA
ETV2	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	87	97	+	13.1803	1.89e-05	0.131	AAGCGGAAGTG
ETV2	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	28	-	13.1803	1.89e-05	0.131	AAGCGGAAGTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	53	68	+	6.46552	1.89e-05	0.294	CTCCCAGCATCCTTTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	53	68	+	6.46552	1.89e-05	0.294	CTCCCAGCATCCTTTG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	53	68	+	6.46552	1.89e-05	0.294	CTCCCAGCATCCTTTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	53	68	+	6.46552	1.89e-05	0.294	CTCCCAGCATCCTTTG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	53	68	+	6.46552	1.89e-05	0.294	CTCCCAGCATCCTTTG
Znf423	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	15	29	-	8.82022	1.89e-05	0.175	AGCCCCCTAGGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	45	65	-	12.0408	1.89e-05	0.00929	GGGGGGGGGGCGGGGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	45	65	-	12.0408	1.89e-05	0.00929	GGGGGGGGGGCGGGGGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	45	65	-	12.0408	1.89e-05	0.00929	GGGGGGGGGGCGGGGGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	45	65	-	12.0408	1.89e-05	0.00929	GGGGGGGGGGCGGGGGGGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	83	103	-	12.0408	1.89e-05	0.00929	GGAGCGGGCGGGCGAGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	12	32	+	12.0408	1.89e-05	0.00929	GGAGCGGGCGGGCGAGGGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	37	57	+	12.0408	1.89e-05	0.00929	AGGGGCGGGGCTGAGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	52	72	+	12.0408	1.89e-05	0.00929	AGAGGGGGGAGGGGGTGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	52	72	+	12.0408	1.89e-05	0.00929	AGAGGGGGGAGGGGGTGGGGC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	59	79	+	12.0408	1.89e-05	0.00929	GGAGGAGGGGCTCTGGGGAAA
FOXH1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	57	67	-	13.6346	1.89e-05	1	TCCAATCAACA
FOXH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	1	11	+	13.6346	1.89e-05	1	TCCAATCAACA
FOXH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	1	11	+	13.6346	1.89e-05	1	TCCAATCAACA
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	61	74	-	11.6212	1.89e-05	0.253	CAGCCACGTCCCCT
FOSL1	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	77	87	+	13.8909	1.89e-05	0.144	GCTGACTCAGG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	5	15	+	12.8455	1.89e-05	0.0121	CCCACGCCTCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	5	15	+	12.8455	1.89e-05	0.0121	CCCACGCCTCT
SP3	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	78	88	+	12.8455	1.89e-05	0.0121	CCCACGCCTCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	27	37	-	12.8455	1.89e-05	0.0121	CCCACGCCTCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	27	37	-	12.8455	1.89e-05	0.0121	CCCACGCCTCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	47	57	-	12.8455	1.89e-05	0.0121	CCCACGCCTCT
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	+	11.4082	1.89e-05	0.184	GGTGACTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	+	11.4082	1.89e-05	0.184	GGTGACTCACG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	-	11.4082	1.89e-05	0.184	GGTGACTCACG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	12	27	-	12.5273	1.89e-05	0.0374	CTCCTCCCACCCCACT
KLF5	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	5	14	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	9	18	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	31	40	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	31	40	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	25	34	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	25	34	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	36	45	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	38	47	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	35	44	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	35	44	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	51	60	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	61	70	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	61	70	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	57	66	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	71	80	+	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	75	84	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	101	110	-	13.551	1.89e-05	0.0102	TCCCCTCCCT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	42	54	-	11.803	1.89e-05	0.225	TGGGGGTCTCCCT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	-	13.7447	1.89e-05	0.169	AATGAGTCATT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	-	13.7447	1.89e-05	0.169	AATGAGTCATT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	-	13.7447	1.89e-05	0.169	AGTGAGTCACC
JUND	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	-	13.7447	1.89e-05	0.169	AATGAGTCATT
JUND	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	+	13.7447	1.89e-05	0.169	AATGAGTCATT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	+	13.7447	1.89e-05	0.169	AATGAGTCATT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	+	13.7447	1.89e-05	0.169	AATGAGTCATT
Gmeb1	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	34	50	+	11.6579	1.89e-05	0.537	TGGTGTACGTACGTGCG
Gmeb1	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	65	81	-	11.6579	1.89e-05	0.537	TGGTGTACGTACGTGCG
TP63	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	-	3.87931	1.89e-05	0.559	CACATGTGCGAGCATGAC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	58	67	-	13.2586	1.89e-05	0.102	CGCAGCTGAC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	58	67	-	13.2586	1.89e-05	0.102	CGCAGCTGAC
ZIC4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	46	60	+	12.6545	1.89e-05	0.0974	GGCTTCCCGCGGTGA
ZIC4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	55	69	-	12.6545	1.89e-05	0.0974	GGCTTCCCGCGGTGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	59	73	-	12.6545	1.89e-05	0.0974	GCACCCCTGCTGCCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	59	73	-	12.6545	1.89e-05	0.0974	GCACCCCTGCTGCCC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	59	73	-	12.6545	1.89e-05	0.0974	GCACCCCTGCTGCCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	59	73	-	12.6545	1.89e-05	0.0974	GCACCCCTGCTGCCC
PAX9	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	53	69	+	5.81818	1.89e-05	0.456	TGTCACGCATGCGTGCG
PAX9	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	46	62	-	5.81818	1.89e-05	0.456	TGTCACGCATGCGTGCG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	64	78	+	11.5082	1.89e-05	0.0361	AGCCCCGCCCTCCGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	64	78	+	11.5082	1.89e-05	0.0361	AGCCCCGCCCTCCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	64	78	+	11.5082	1.89e-05	0.0361	AGCCCCGCCCTCCGC
ETV3	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	12.9577	1.89e-05	0.0826	CCCGGAAGTA
ETV3	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	12.9577	1.89e-05	0.0826	CCCGGAAGTA
EBF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	63	76	-	12.1967	1.89e-05	0.365	ACTCCCAGGGTACT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	23	37	+	11.2429	1.89e-05	0.0984	GGCTTCCCGCAGTGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	23	37	+	11.2429	1.89e-05	0.0984	GGCTTCCCGCAGTGC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	23	37	+	11.2429	1.89e-05	0.0984	GGCTTCCCGCAGTGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	23	37	+	11.2429	1.89e-05	0.0984	GGCTTCCCGCAGTGC
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	20	32	+	13.3061	1.89e-05	0.301	GGGATGAGGTCAG
ELF4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	38	49	+	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	54	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	61	72	+	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	77	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	77	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	77	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	77	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	77	-	12.1311	1.89e-05	0.073	CCGCCGGAAGTG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	-	13.9149	1.89e-05	0.169	AATGAGTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	-	13.9149	1.89e-05	0.169	AATGAGTCATT
FOS	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	-	13.9149	1.89e-05	0.169	AATGAGTCATT
FOS	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	+	13.9149	1.89e-05	0.169	AATGAGTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	+	13.9149	1.89e-05	0.169	AATGAGTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	+	13.9149	1.89e-05	0.169	AATGAGTCATT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	+	12.8793	1.89e-05	0.0537	AGCCCTCCAGGCT
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	-	12.8793	1.89e-05	0.0537	TGCCCGGCGGGGC
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	+	12.8793	1.89e-05	0.0537	TGCCCGGCGGGGC
Esrra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	83	93	-	11.2	1.89e-05	0.862	GTCAAGGTGAC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	36	52	+	8.21818	1.89e-05	0.016	TGCGCCACGCCCCTGGG
SP4	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	41	57	+	8.21818	1.89e-05	0.016	CAAGCTCCGCCTCCCGG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	52	68	-	8.21818	1.89e-05	0.016	TGCGCCACGCCCCTGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	68	84	+	8.21818	1.89e-05	0.016	TCAGCCCCACCCACTGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	68	84	+	8.21818	1.89e-05	0.016	TCAGCCCCACCCACTGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	68	84	+	8.21818	1.89e-05	0.016	TCAGCCCCACCCACTGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	68	84	+	8.21818	1.89e-05	0.016	TCAGCCCCACCCACTGA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	12.8298	1.89e-05	0.0537	ACCGGAACTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	12.8298	1.89e-05	0.0537	ACCGGAACTA
NKX2-3	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	47	56	-	13.0385	1.89e-05	1	AGCACTTGAA
Gabpa	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	51	61	+	13.3443	1.9e-05	0.0386	CCGGAAGTGTT
MNX1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	55	+	11.2985	1.9e-05	1	GTTAATTAAA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	20	30	+	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	20	30	+	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	65	75	+	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	88	98	+	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	18	28	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	18	28	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	40	50	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	55	65	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	55	65	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	64	74	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	64	74	-	12.8293	1.9e-05	0.0121	GCCGCGCCCCC
EHF	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	67	78	-	12.7377	1.9e-05	0.0991	AACCCGGAAGGC
TFAP4	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	14	23	+	13.4	1.9e-05	0.655	CTCAGCTGTT
TFAP4	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	101	-	13.4	1.9e-05	0.655	CTCAGCTGTT
NRL	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	13	23	+	11.9231	1.9e-05	0.72	AATGCGCTGAC
SP1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	3	13	+	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	29	39	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	30	40	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	30	40	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	44	+	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	35	45	+	13.2885	1.9e-05	0.0075	AGCCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	44	54	+	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	43	53	-	13.2885	1.9e-05	0.0075	CCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	60	70	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	60	70	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	72	+	13.2885	1.9e-05	0.0075	CCCCCACCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	60	70	-	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	80	90	+	13.2885	1.9e-05	0.0075	GCTCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	71	81	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	74	84	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	95	+	13.2885	1.9e-05	0.0075	CCCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	102	112	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	102	112	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	102	112	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	102	112	-	13.2885	1.9e-05	0.0075	CGCCCGCCCCT
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	+	12.9184	1.9e-05	0.0857	TGGCTCAGGGCA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	-	12.9184	1.9e-05	0.0857	TGCCCTGAGCCA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	-	12.9184	1.9e-05	0.0857	AGCCCAGAGGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	8	22	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	8	22	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	12	26	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	16	30	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	20	34	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	24	38	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	24	38	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	40	54	+	12.8793	1.9e-05	0.00656	CTCCCTCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	83	+	12.8793	1.9e-05	0.00656	TCCCCTCCCCCATCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	83	+	12.8793	1.9e-05	0.00656	TCCCCTCCCCCATCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	19	33	-	12.8793	1.9e-05	0.00656	GGACCGCCCCTCCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	50	64	-	12.8793	1.9e-05	0.00656	GTCCTTCCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	32	51	-	7.73394	1.9e-05	0.0448	CCCCGCCCCCACCCCTACCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	32	51	-	7.73394	1.9e-05	0.0448	CCCCGCCCCCACCCCTACCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	32	51	-	7.73394	1.9e-05	0.0448	CCCCGCCCCCACCCCTACCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	32	51	-	7.73394	1.9e-05	0.0448	CCCCGCCCCCACCCCTACCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	32	51	-	7.73394	1.9e-05	0.0448	CCCCGCCCCCACCCCTACCC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	16	29	-	13.2576	1.9e-05	0.0312	GGATGCCAGGCCTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	39	52	+	13.2576	1.9e-05	0.0312	CCAACCTGGGCCTA
Zfx	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	86	99	+	13.2576	1.9e-05	0.0312	GGATGCCAGGCCTC
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	98	113	+	1.2069	1.9e-05	0.742	GAGGGGCGAAAGGACA
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	98	113	+	1.2069	1.9e-05	0.742	GAGGGGCGAAAGGACA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	54	65	-	13	1.9e-05	0.146	GGCCTGGGGCCA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	54	65	-	13	1.9e-05	0.146	GGCCTGGGGCCA
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	24	37	-	10	1.9e-05	0.0959	GGACTCCTGCTGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	24	37	-	10	1.9e-05	0.0959	GGACTCCTGCTGAG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	81	94	-	10	1.9e-05	0.0959	GGACTCCTGCTGAG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	21	34	+	10	1.9e-05	0.0959	GGACTCCTGCTGAG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	78	91	+	10	1.9e-05	0.0959	GGACTCCTGCTGAG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	+	10.9592	1.9e-05	0.085	TCTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	+	10.9592	1.9e-05	0.085	TCTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	+	10.9592	1.9e-05	0.085	TCTTACGTCACC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	+	10.9592	1.9e-05	0.085	TCTTACGTCACC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	+	10.9592	1.9e-05	0.085	TCTTACGTCACC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	20	+	13.0364	1.9e-05	0.0548	TGCCCCGGGGGG
KLF16	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	24	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	30	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	30	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	35	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	53	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	64	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	64	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	64	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	77	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	77	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	79	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	79	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	92	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	96	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	107	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	107	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	108	+	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	4	14	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	7	17	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	10	20	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	44	54	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	44	54	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	51	61	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	62	72	-	12.9138	1.9e-05	0.0123	TCCCCTCCCCC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	19	33	+	12.7727	1.9e-05	0.0703	GTATCGCGATATCGG
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	22	35	-	10.6316	1.9e-05	0.557	GTGCCAGCTGTCAG
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	22	35	-	10.6316	1.9e-05	0.557	GTGCCAGCTGTCAG
TFEB	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	13.0577	1.9e-05	0.117	CTCACGTGAT
TFEB	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	13.0577	1.9e-05	0.117	CTCACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	13.8077	1.9e-05	0.209	CGCACGTGAT
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	13.8077	1.9e-05	0.209	CGCACGTGAT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	27	40	+	12.75	1.9e-05	0.0113	CTACCACCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	49	62	+	12.75	1.9e-05	0.0113	TGCCCTCCTCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	54	67	+	12.75	1.9e-05	0.0113	GTTCCTCCTCCGCA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	63	76	+	12.75	1.9e-05	0.0113	ACTCAGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	65	78	+	12.75	1.9e-05	0.0113	CTACCACCCCCTGC
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	56	67	-	12.8871	1.9e-05	1	TGATGCTAATTA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	22	38	-	12.3571	1.9e-05	0.338	GGGGCAGGCGGGGGACA
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	20	34	+	13.2115	1.9e-05	0.0943	CGCTCCACCAATCAC
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	20	34	+	13.2115	1.9e-05	0.0943	CGCTCCACCAATCAC
ELF1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	51	-	12.2727	1.9e-05	0.0844	TCACCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	64	75	+	12.2727	1.9e-05	0.0844	TCACCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	64	75	+	12.2727	1.9e-05	0.0844	TCACCGGAAGTC
CEBPA	WILDTYPE__Antisense.noflip.NA__chr2:74612556..74612670,+__446.1.0.0	67	77	+	13.3673	1.9e-05	0.672	ATTTCACAACT
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	6	22	+	8.2	1.9e-05	0.016	TTTTCCCCGCCCCCGCC
SP4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	6	22	-	8.2	1.9e-05	0.016	CGGGCTCCGCCCTCTCC
SP4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	93	109	+	8.2	1.9e-05	0.016	CGGGCTCCGCCCTCTCC
CTCF	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	16	34	-	11.4918	1.9e-05	0.0825	CAGCCGGTGGGTGGAACCG
SP8	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	33	44	-	12.8553	1.91e-05	0.018	GCCCCGCCCAGA
SP8	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	82	+	12.8553	1.91e-05	0.018	GCCCCGCCCAGA
BATF3	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	70	83	-	5.72727	1.91e-05	0.115	GGCTGACGTCAGGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	23	37	+	11.4918	1.91e-05	0.0361	AGCCACGCCTACTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	23	37	+	11.4918	1.91e-05	0.0361	AGCCACGCCTACTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	23	37	+	11.4918	1.91e-05	0.0361	AGCCACGCCTACTTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	23	37	+	11.4918	1.91e-05	0.0361	AGCCACGCCTACTTC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	31	45	+	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	31	45	+	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
Klf12	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	36	50	+	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	65	79	-	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	65	79	-	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
Klf12	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	70	84	-	11.4918	1.91e-05	0.0361	GGCCCCACCCACCCG
E2F6	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	64	74	-	13.5862	1.91e-05	0.0374	GGGAGGGAGCC
E2F6	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	73	83	+	13.5862	1.91e-05	0.0374	GGGAGGGAGCC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	+	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	+	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	+	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	-	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	+	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	+	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	-	13.7234	1.91e-05	0.169	GGTGACTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	-	13.7234	1.91e-05	0.169	GGTGACTCAGC
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	64	73	+	13.3793	1.91e-05	0.659	GCTTTGTTTT
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	64	73	+	13.3793	1.91e-05	0.659	GCTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	64	73	+	13.3793	1.91e-05	0.659	GCTTTGTTTT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	-	12.8621	1.91e-05	0.0537	TGCCTGCAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	-	12.8621	1.91e-05	0.0537	TGCCTGCAAGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	+	12.8621	1.91e-05	0.0537	TGCCTGCAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	-	12.8621	1.91e-05	0.0537	CGCCCAAAGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	-	12.8621	1.91e-05	0.0537	CGCCCAAAGGGCA
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	16	36	+	8.46939	1.91e-05	0.205	GTCAGGGCTGAGGTCAGGTCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	19	39	-	12.0204	1.91e-05	0.00936	TGAGGGAGGGAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	2	22	+	12.0204	1.91e-05	0.00936	GGAGCTAGGGAAGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	2	22	+	12.0204	1.91e-05	0.00936	GGAGCTAGGGAAGGGGTGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	12	32	+	12.0204	1.91e-05	0.00936	GGAGGGGAGAAGAGGAGGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	18	38	+	12.0204	1.91e-05	0.00936	AGGGGCGGGGCGAGAAGGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	38	58	+	12.0204	1.91e-05	0.00936	GGGGCGGGGGTGGGGAGAGGG
SP1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	26	36	+	13.2692	1.91e-05	0.00754	CCTCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	79	89	-	13.2692	1.91e-05	0.00754	CCTCCGCCCTC
EGR4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	49	64	+	12.5091	1.91e-05	0.0374	CCAGGCCCACGCAGGC
EGR4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	51	66	-	12.5091	1.91e-05	0.0374	CCAGGCCCACGCAGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	13.4697	1.91e-05	0.171	ATCACGTGTC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	13.4697	1.91e-05	0.171	ATCACGTGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	13.0517	1.91e-05	0.0709	ACCGGAACTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	13.0517	1.91e-05	0.0709	ACCGGAACTA
ESRRB	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	66	76	-	11.9655	1.91e-05	0.867	CCAAGGTCAGT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	+	13.0182	1.91e-05	0.0893	CGCCCGAGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	+	13.0182	1.91e-05	0.0893	CGCCCGAGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	+	13.0182	1.91e-05	0.0893	CGCCCGAGGCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	+	13.0182	1.91e-05	0.0893	CGCCCGAGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	+	13.0182	1.91e-05	0.0893	CGCCCGAGGCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	+	13.0182	1.91e-05	0.0893	TCCCTCGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	+	13.0182	1.91e-05	0.0893	TCCCTCGGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	-	13.0182	1.91e-05	0.0893	TCCCTCGGGGCG
Crx	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	2	12	+	13.1034	1.91e-05	1	GATGGGATTAG
FOSL1	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	27	37	-	13.8727	1.91e-05	0.144	TATGACTCAGG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	10.4758	1.91e-05	0.043	CGCACGTGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	10.4758	1.91e-05	0.043	GGCACGTGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	10.4758	1.91e-05	0.043	CGCACGTGCC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	10.4758	1.91e-05	0.043	GGCACGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	10.4758	1.91e-05	0.043	GGCACGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	10.4758	1.91e-05	0.043	CGCACGTGCC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	10.4758	1.91e-05	0.043	GGCACGTGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	10.4758	1.91e-05	0.043	CGCACGTGCC
Alx4	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	66	82	-	13.1688	1.91e-05	1	TCTGTTAATTAATCTTC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	8	21	-	9.97872	1.91e-05	0.0959	CGCCCCCCGCTCCG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	36	49	+	9.97872	1.91e-05	0.0959	CGCCCCCCGCTCCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	94	107	+	9.97872	1.91e-05	0.0959	GCCCTCCTGCTGAT
BATF3	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	20	33	+	5.71212	1.91e-05	0.115	AGGTGACGTCACAC
BATF3	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	82	95	-	5.71212	1.91e-05	0.115	AGGTGACGTCACAC
Rarb	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	18	33	-	1.17241	1.91e-05	0.742	AAAGGCCATGGGGCCA
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	47	66	+	7.70642	1.91e-05	0.0449	CCCCCCACCCCACCCCCCTC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	56	75	+	7.70642	1.91e-05	0.0449	CCGCACCCCACCCCCATCTC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	1	10	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	4	13	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	4	13	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	7	16	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	10	19	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	10	19	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	1	10	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	1	10	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	11	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	11	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	11	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	12	21	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	6	15	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	16	25	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	16	25	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	8	17	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	8	17	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	18	27	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	18	27	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	19	28	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	12	21	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	21	30	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	21	-	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	12	21	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	13	22	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	22	31	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	15	24	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	15	24	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	25	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	27	36	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	18	27	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	28	37	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	31	40	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	31	40	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	32	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	32	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	32	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	33	42	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	34	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	34	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	34	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	34	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	35	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	36	45	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	36	45	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	38	47	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	32	41	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	32	41	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	32	41	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	32	41	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	32	41	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	42	51	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	42	51	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	43	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	43	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	36	45	-	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	37	46	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	40	49	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	54	63	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	59	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	59	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	59	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	59	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	61	70	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	61	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	64	73	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	64	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	64	73	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	65	74	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	65	74	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	66	75	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	66	75	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	67	76	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	67	76	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	69	78	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	61	70	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	61	70	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	62	71	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	73	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	66	75	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	70	79	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	70	79	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	83	92	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	78	87	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	88	97	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	88	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	81	90	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	90	99	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	81	90	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	84	93	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	94	103	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	94	103	+	12.8367	1.91e-05	0.0121	TGGGTGTGGG
Klf4	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	96	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	88	97	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	88	97	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	105	114	+	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	99	108	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	99	108	-	12.8367	1.91e-05	0.0121	GGGGCGGGGG
MSC	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	33	+	13.2439	1.91e-05	0.569	ACCACCTGTT
IRF1	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	51	71	+	11.8871	1.91e-05	0.139	GCTTGCTTTTATTTTCACAAA
IRF1	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	31	51	-	11.8871	1.91e-05	0.139	GCTTGCTTTTATTTTCACAAA
IRF1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	44	64	-	11.8871	1.91e-05	0.139	AATCGGTTTCTTTTTCCCCCA
IRF1	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	64	84	+	11.8871	1.91e-05	0.139	GCTTGCTTTTATTTTCACAAA
IRF1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	44	64	-	11.8871	1.91e-05	0.139	AATCGGTTTCTTTTTCCCCCA
IRF1	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	44	64	-	11.8871	1.91e-05	0.139	GCTTGCTTTTATTTTCACAAA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	-	13.1346	1.91e-05	0.0703	TGCCTGCGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	-	13.1346	1.91e-05	0.0703	TGCCTGCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	+	13.1346	1.91e-05	0.0703	TGCCTGCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	+	13.1346	1.91e-05	0.0703	TGCCTGCGGCT
ETS1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	13.2931	1.91e-05	0.076	ACCGGATGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	13.2931	1.91e-05	0.076	ACCGGATGTC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	50	63	-	12.5517	1.92e-05	0.126	GGCGCCCTGGTGAC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	13.2909	1.92e-05	0.0969	GCCACGTGCG
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	13.2909	1.92e-05	0.0969	GCCACGTGCG
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	47	61	-	12.7759	1.92e-05	0.317	AAGCTGAAGGTCAAA
Arx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	2	18	+	13.0952	1.92e-05	1	ATCAATTAATTAAGAGC
Arx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	2	18	+	13.0952	1.92e-05	1	ATCAATTAATTAAGAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	18	32	+	12.8621	1.92e-05	0.00661	GGACCACCCCCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	18	32	+	12.8621	1.92e-05	0.00661	GGACCACCCCCCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	35	49	+	12.8621	1.92e-05	0.00661	GCTCCGCCCTACTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	82	96	-	12.8621	1.92e-05	0.00661	GCTCCGCCCTACTCC
Hoxa9	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	77	87	+	13.1184	1.92e-05	1	GCCATCTATCA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	27	41	-	12.7576	1.92e-05	0.0706	ATCTCGTGAGATTTA
MAFG	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	40	60	-	12.1531	1.92e-05	0.929	AGGACGCTGAGGCAGCGCAGG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	98	108	+	12.8793	1.92e-05	0.0123	CACACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	98	108	+	12.8793	1.92e-05	0.0123	CACACACCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	7	17	-	12.8793	1.92e-05	0.0123	CACACACCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	47	57	-	12.8793	1.92e-05	0.0123	CACACACCCAC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	19	33	-	12.6667	1.92e-05	0.142	GGGGGGGAAAGGCCC
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	97	111	+	12.6667	1.92e-05	0.142	CCGGGGCACGGGCCA
TFE3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	12.4694	1.92e-05	0.0945	CCCACGTGAT
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	12.4694	1.92e-05	0.0945	CCCACGTGAT
TFE3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	12.4694	1.92e-05	0.0945	CCCACGTGAT
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	12.4694	1.92e-05	0.0945	CCCACGTGAT
TFE3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	12.4694	1.92e-05	0.0945	CCCACGTGAT
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	33	43	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	33	43	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	33	43	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	33	43	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	36	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	42	52	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	42	52	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	42	52	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	42	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	42	52	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	73	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	73	83	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	79	89	+	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	82	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	89	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	89	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	89	-	12.7091	1.92e-05	0.101	CCCCGGAAGTG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	37	48	+	13.1061	1.92e-05	0.109	CGAGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	37	48	+	13.1061	1.92e-05	0.109	CGAGGTCCGCCC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	+	12.3939	1.92e-05	0.132	TATTGTCATGGAGACG
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	+	12.3939	1.92e-05	0.132	TATTGTCATGGAGACG
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	+	12.3939	1.92e-05	0.132	TATTGTCATGGAGACG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	+	12.3939	1.92e-05	0.132	TATTGTCATGGAGACG
Rxra	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	41	-	7.06098	1.92e-05	0.271	AGGGTCAGAGGCCG
Rxra	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	74	87	+	7.06098	1.92e-05	0.271	AGGGTCAGAGGCCG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	45	+	12	1.92e-05	0.144	TGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	45	+	12	1.92e-05	0.144	TGTCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	78	87	-	12	1.92e-05	0.144	TGTCACGTGA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	78	87	-	12	1.92e-05	0.144	TGTCACGTGA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	20	33	-	13.3793	1.92e-05	0.188	GTGCCGGGAAGCGC
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	20	33	-	13.3793	1.92e-05	0.188	GTGCCGGGAAGCGC
CTCF	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	16	34	+	11.4754	1.92e-05	0.0825	CAGCCGCGAGAAGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	87	105	+	11.4754	1.92e-05	0.0825	CCGACAGAAGATGGCGGAT
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	87	105	+	11.4754	1.92e-05	0.0825	CCGACAGAAGATGGCGGAT
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	87	105	+	11.4754	1.92e-05	0.0825	CCGACAGAAGATGGCGGAT
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	87	105	+	11.4754	1.92e-05	0.0825	CCGACAGAAGATGGCGGAT
CTCF	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	81	99	-	11.4754	1.92e-05	0.0825	CAGCCGCGAGAAGGCGGGG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	59	68	+	10.7762	1.92e-05	0.0721	GCCACGCGCT
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	59	68	+	10.7762	1.92e-05	0.0721	GCCACGCGCT
PLAG1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	13	26	+	9.32653	1.92e-05	0.0605	GCGGGCTAAAGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	16	29	-	9.32653	1.92e-05	0.0605	CGGGGGCACGGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	52	+	9.32653	1.92e-05	0.0605	GTGGGGGTGGGGGG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	30	39	+	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	30	39	+	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	40	49	-	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	46	55	-	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	46	55	-	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	46	55	-	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	60	69	+	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	66	75	+	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	66	75	+	13.0656	1.92e-05	0.144	CATCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	66	75	+	13.0656	1.92e-05	0.144	CATCACGTGT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	65	82	+	-8.46053	1.92e-05	0.0315	GGAAGGAAGCCCGGGAAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	63	80	-	-8.46053	1.92e-05	0.0315	GGAGGAGGGCGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	63	80	-	-8.46053	1.92e-05	0.0315	GGAGGAGGGCGAGGAGGA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	22	32	+	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	22	32	+	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	22	32	+	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	22	32	+	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	33	43	-	12.8276	1.92e-05	0.215	GCCTGTGGTCA
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	40	50	-	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	40	50	-	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	40	50	-	12.8276	1.92e-05	0.215	TGCTGTGGTTG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	40	50	-	12.8276	1.92e-05	0.215	TGCTGTGGTTG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	2	16	-	11.4754	1.92e-05	0.0361	GCCCACGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	2	16	-	11.4754	1.92e-05	0.0361	GCCCACGCCCCGCCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	6	20	-	11.4754	1.92e-05	0.0361	GGCCACGCCTCAGTA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	25	39	-	11.4754	1.92e-05	0.0361	GGCCCCACCCACGTC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	25	39	-	11.4754	1.92e-05	0.0361	GGCCCCACCCACGTC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	25	39	-	11.4754	1.92e-05	0.0361	GGCCCCACCCACGTC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	39	53	+	11.4754	1.92e-05	0.0361	GCCCACGCCCCGCCC
Klf12	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	31	45	-	11.4754	1.92e-05	0.0361	CGCCCCGCCCATCTC
Klf12	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	70	84	+	11.4754	1.92e-05	0.0361	CGCCCCGCCCATCTC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	89	102	-	12.7308	1.92e-05	0.0114	CTGCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	92	105	-	12.7308	1.92e-05	0.0114	CTACCGCCGCCGCG
KLF13	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	52	69	-	8.74138	1.92e-05	0.148	GGGAAACTCCCCCTTATA
NRF1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	28	38	+	12.6909	1.92e-05	0.0104	ACGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	61	71	-	12.6909	1.92e-05	0.0104	ACGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	61	71	-	12.6909	1.92e-05	0.0104	ACGCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	61	71	-	12.6909	1.92e-05	0.0104	ACGCACGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	61	71	-	12.6909	1.92e-05	0.0104	ACGCACGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	77	87	-	12.6909	1.92e-05	0.0104	ACGCACGCGCG
POU5F1B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	15	23	+	12.8673	1.92e-05	1	TATGTAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	15	23	+	12.8673	1.92e-05	1	TATGTAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	19	27	+	12.8673	1.92e-05	1	TATGTAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	19	27	+	12.8673	1.92e-05	1	TATGTAAAT
POU3F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	15	23	+	13.1735	1.92e-05	1	TATGTAAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	15	23	+	13.1735	1.92e-05	1	TATGTAAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	19	27	+	13.1735	1.92e-05	1	TATGTAAAT
POU3F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	19	27	+	13.1735	1.92e-05	1	TATGTAAAT
SRY	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	54	62	+	11.7111	1.92e-05	1	TTAAACAAT
SRY	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	73	81	+	11.7111	1.92e-05	1	TTAAACAAT
SRY	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	73	81	+	11.7111	1.92e-05	1	TTAAACAAT
EGR3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	55	69	+	10.1207	1.92e-05	0.0302	CCCCGCCCCCGTTTC
EGR3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	46	60	-	10.1207	1.92e-05	0.0302	CCCCGCCCCCGTTTC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	71	85	+	10.1207	1.92e-05	0.0302	GGCCTCCCCCGCAGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	54	71	-	-8.47368	1.92e-05	0.0315	GGCAGGAAGCCACGCAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	54	71	-	-8.47368	1.92e-05	0.0315	GGCAGGAAGCCACGCAGA
ETV5	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	12.3818	1.92e-05	0.076	ACCGGATGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	12.3818	1.92e-05	0.076	ACCGGATGCT
ETV5	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	12.3818	1.92e-05	0.076	GCCGGATGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	12.3818	1.92e-05	0.076	GCCGGATGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	38	51	-	9.31633	1.92e-05	0.0605	GAGGGGATGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	38	51	-	9.31633	1.92e-05	0.0605	GAGGGGATGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	66	79	-	9.31633	1.92e-05	0.0605	GAGGGGATGGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	66	79	-	9.31633	1.92e-05	0.0605	GAGGGGATGGGGTG
MNT	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	13.1364	1.93e-05	0.247	ACCACGTGTC
MNT	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	13.1364	1.93e-05	0.247	ACCACGTGTC
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	106	-	13.0612	1.93e-05	0.285	CACCACGTGGA
ZIC1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	13	26	-	9.95745	1.93e-05	0.0959	GCCTCCCTGCCGCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	49	62	-	9.95745	1.93e-05	0.0959	GGACCCCCACCGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	100	113	-	9.95745	1.93e-05	0.0959	GGACCCCCACCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	2	15	+	9.95745	1.93e-05	0.0959	GGACCCCCACCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	53	66	+	9.95745	1.93e-05	0.0959	GGACCCCCACCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	89	102	+	9.95745	1.93e-05	0.0959	GCCTCCCTGCCGCG
SPI1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	48	61	+	7.41818	1.93e-05	0.127	ATAAAGAGGAAGGG
SPI1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	54	67	-	7.41818	1.93e-05	0.127	ATAAAGAGGAAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	24	41	-	-8.48684	1.93e-05	0.0315	GGAAAGGGGGGGGGAAAA
CEBPB	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	+	12.66	1.93e-05	0.744	ATGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	-	12.66	1.93e-05	0.744	ATGGCGCAAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	-	12.66	1.93e-05	0.744	ATGGCGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	-	12.66	1.93e-05	0.744	ATGGCGCAAT
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	13.6154	1.93e-05	1	AACATATGCC
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	13.6154	1.93e-05	1	AACATATGCC
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	32	42	-	13.3103	1.93e-05	0.436	AAATCTGTGCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	29	40	-	12.8421	1.93e-05	0.018	GCCCCACCCACA
SP8	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	75	86	+	12.8421	1.93e-05	0.018	GCCCCACCCACA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	53	64	-	13.0182	1.93e-05	0.0548	AGCCCCGAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	53	64	-	13.0182	1.93e-05	0.0548	AGCCCCGAGGCC
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	14	23	+	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	14	23	+	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	14	23	+	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	8	17	-	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	25	34	+	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	39	48	+	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	81	90	-	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	81	90	-	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	81	90	-	12.3333	1.93e-05	0.137	GAAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	81	90	-	12.3333	1.93e-05	0.137	GAAGGGGGAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	4	21	-	-8.5	1.93e-05	0.0315	GGAAGAGAAGGAGGCGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	23	43	+	12	1.93e-05	0.00945	GGAGGAGGGAGTGACGAGTCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	56	76	+	12	1.93e-05	0.00945	AAGGGAGGGGAGGGGAGAATC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	63	83	+	12	1.93e-05	0.00945	CGAGGAGAGGAGGCGTGAGAG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	+	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	-	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	+	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	-	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	-	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	+	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	+	13.3818	1.93e-05	0.063	TCCCTCAGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	-	13.3818	1.93e-05	0.063	TCCCTCAGGCG
XBP1	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	40	53	+	12.4423	1.93e-05	0.446	ATCTCCACGTCACA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	50	69	+	7.6789	1.93e-05	0.0452	CCCCACCCCTCTCCCCAACG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	23	40	-	-8.51316	1.93e-05	0.0315	GGGAGGGGGCGGGGCAGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	54	71	-	-8.51316	1.93e-05	0.0315	GAAAGGAGGGGAGCAGCC
TFEC	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	12.8537	1.93e-05	0.129	GACACGTGAC
TFEC	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	12.8537	1.93e-05	0.129	GACACGTGAC
TFEC	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	12.8537	1.93e-05	0.129	GACACGTGAC
TFEC	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	12.8537	1.93e-05	0.129	GACACGTGAC
TFEC	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	12.8537	1.93e-05	0.129	GACACGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	12.8537	1.93e-05	0.129	GACACGTGAC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	96	111	-	-3.21154	1.93e-05	0.317	CCACCCCCGGCGGCGG
KLF13	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	12	29	+	8.72414	1.93e-05	0.148	TGACCACGCCCCCGGCCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	+	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	+	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	+	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	+	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	-	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	-	13	1.93e-05	0.0893	TGCCCCCGGCCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	-	13	1.93e-05	0.0893	TGCCCCCGGCCG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	7	21	-	11.459	1.93e-05	0.0361	TGCCCCGCCCTGTCC
Klf12	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	27	41	-	11.459	1.93e-05	0.0361	TGCCCCGCCCCTTCC
Klf12	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	56	70	+	11.459	1.93e-05	0.0361	TGCCCCGCCCCTTCC
Klf12	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	45	59	-	11.459	1.93e-05	0.0361	TGCCCCGCCCCTTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	10	20	-	12.8621	1.93e-05	0.0123	GCCACTCCCAT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	10	20	-	12.8621	1.93e-05	0.0123	GCCACTCCCAT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	10	20	-	12.8621	1.93e-05	0.0123	GCCACTCCCAT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	10	20	-	12.8621	1.93e-05	0.0123	GCCACTCCCAT
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	33	46	-	13.2273	1.93e-05	0.0316	ACAGGCTGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	33	46	-	13.2273	1.93e-05	0.0316	ACAGGCTGGGCCTC
HINFP	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	63	74	+	13.0909	1.93e-05	0.109	CCGCGTCCCCGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	28	45	-	-8.52632	1.93e-05	0.0315	GGAAGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	69	86	-	-8.52632	1.93e-05	0.0315	GGAAGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	69	86	-	-8.52632	1.93e-05	0.0315	GGAAGAGGAGGAGGAGGA
RELA	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	1	10	+	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	47	56	-	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	59	68	+	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	59	68	+	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	59	68	+	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	59	68	+	13.3776	1.93e-05	0.18	TGGGCTTTCC
RELA	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	105	114	-	13.3776	1.93e-05	0.18	TGGGCTTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	17	31	+	12.8448	1.94e-05	0.00661	GCACCGCCCTCCCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	17	31	+	12.8448	1.94e-05	0.00661	GCACCGCCCTCCCGT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	20	34	+	12.8448	1.94e-05	0.00661	CTCCCGCCCCGACTC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	20	34	+	12.8448	1.94e-05	0.00661	CTCCCGCCCCGACTC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	44	+	12.8448	1.94e-05	0.00661	TCCCCTCCCACCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	41	55	+	12.8448	1.94e-05	0.00661	CGCCCGCCCCGCCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	41	55	+	12.8448	1.94e-05	0.00661	CGCCCGCCCCGCCAG
SP2	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	73	87	+	12.8448	1.94e-05	0.00661	GACCCGCCCCCGAGT
SP2	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	110	+	12.8448	1.94e-05	0.00661	GCCCCGCCCAAGCAG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	5	19	-	12.8448	1.94e-05	0.00661	GCCCCGCCCAAGCAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	5	19	-	12.8448	1.94e-05	0.00661	GCCCCGCCCAAGCAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	5	19	-	12.8448	1.94e-05	0.00661	GCCCCGCCCAAGCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	15	29	-	12.8448	1.94e-05	0.00661	GCTCCGCCCAGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	15	29	-	12.8448	1.94e-05	0.00661	GCTCCGCCCAGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	28	42	-	12.8448	1.94e-05	0.00661	GACCCGCCCCCGAGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	28	42	-	12.8448	1.94e-05	0.00661	GACCCGCCCCCGAGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	28	42	-	12.8448	1.94e-05	0.00661	GACCCGCCCCCGAGT
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	46	60	-	12.8448	1.94e-05	0.00661	ACCCCTCCCCTCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	58	72	-	12.8448	1.94e-05	0.00661	GCTCCGCCCAGCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	58	72	-	12.8448	1.94e-05	0.00661	GCTCCGCCCAGCCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	90	104	-	12.8448	1.94e-05	0.00661	CTCCCGCCCCGACTC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	90	104	-	12.8448	1.94e-05	0.00661	CTCCCGCCCCGACTC
NR2F1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	27	39	+	13.3878	1.94e-05	0.367	TAAGGGTCACATG
Tcf12	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	43	+	13.8367	1.94e-05	0.136	GACAGCTGTGG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	72	82	-	13.8367	1.94e-05	0.136	GACAGCTGTGG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	72	82	-	13.8367	1.94e-05	0.136	GACAGCTGTGG
EGR3	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	23	37	-	10.1034	1.94e-05	0.0302	CCCCGCCGACGCCCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	78	92	+	10.1034	1.94e-05	0.0302	CCCCGCCGACGCCCC
ELF4	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	21	32	-	12.082	1.94e-05	0.073	GTCCAGGAAGTA
ELF4	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	53	64	+	12.082	1.94e-05	0.073	GTCCAGGAAGTA
ELF4	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	51	62	-	12.082	1.94e-05	0.073	GTCCAGGAAGTA
HOXA10	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	1	11	+	12.0755	1.94e-05	1	TGTCATAAAAA
FOXC1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	17	27	-	12.98	1.94e-05	1	TGTGTAAATAA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	-	13.8545	1.94e-05	0.144	GATGAGTCAGA
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	-	13.8545	1.94e-05	0.144	GATGAGTCAGA
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	-	13.8545	1.94e-05	0.144	GATGAGTCAGA
ELF1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	24	-	12.2364	1.94e-05	0.0844	TTCCCGGAAGCC
ELF1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	91	102	+	12.2364	1.94e-05	0.0844	TTCCCGGAAGCC
RXRG	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	5	18	+	6.34043	1.94e-05	0.379	GGGGTTAAGGGGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	15	32	-	-8.53947	1.94e-05	0.0315	CGGAGGGGGGGAGGCGGG
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	+	11.3061	1.94e-05	0.184	GATGACTCACA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	+	11.3061	1.94e-05	0.184	GATGACTCACA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	+	11.3061	1.94e-05	0.184	GATGACTCACA
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	+	11.3061	1.94e-05	0.184	GATGACTCACA
PAX5	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	13	31	+	12.6613	1.94e-05	0.137	CGGCGCAGCGGGCGGTGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	84	102	-	12.6613	1.94e-05	0.137	CGGCGCAGCGGGCGGTGGC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	9	18	-	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	9	18	-	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	9	18	-	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	9	18	-	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	5	14	+	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	5	14	+	12.3548	1.94e-05	1	CCTGGTTAAC
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	5	14	+	12.3548	1.94e-05	1	CCTGGTTAAC
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	+	9.91379	1.94e-05	0.132	GGTTACCGTGACAATG
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	30	+	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	30	+	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	30	+	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	30	+	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	21	30	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	21	30	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	21	30	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	21	30	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	44	+	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	41	50	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	41	50	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	41	50	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	41	50	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	56	65	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	56	65	-	13.5102	1.94e-05	0.0104	ACCCCGCCCA
ELF4	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	25	-	12.0656	1.94e-05	0.073	GATCCGGAAGCG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	42	56	-	11.1857	1.94e-05	0.0984	CGCCTCCCGCAGTTC
Esrra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	13	23	+	11.0727	1.94e-05	0.862	CCCAAGGTCAC
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	13	23	+	11.0727	1.94e-05	0.862	CCCAAGGTCAC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	13	23	+	11.0727	1.94e-05	0.862	CCCAAGGTCAC
Esrra	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	71	81	+	11.0727	1.94e-05	0.862	CCCAAGGTCAC
BATF3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	28	41	+	5.66667	1.94e-05	0.115	CGCTGACGTGAGCG
BATF3	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	39	52	-	5.66667	1.94e-05	0.115	AAATGACGTTATCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	74	87	-	5.66667	1.94e-05	0.115	CGCTGACGTGAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	74	87	-	5.66667	1.94e-05	0.115	CGCTGACGTGAGCG
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	56	70	-	13.1408	1.94e-05	0.341	CAAGTAAAAACACAG
GLIS1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	86	101	+	-3.23077	1.94e-05	0.317	TCACCCTCCTCGAAGG
GLIS1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	14	29	-	-3.23077	1.94e-05	0.317	TCACCCTCCTCGAAGG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	29	44	-	-3.23077	1.94e-05	0.317	CGACCCCCTTCGCTGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	29	44	-	-3.23077	1.94e-05	0.317	CGACCCCCTTCGCTGC
ZIC1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	56	69	-	9.93617	1.94e-05	0.0959	GGCTTCCCGCGGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	46	59	+	9.93617	1.94e-05	0.0959	GGCTTCCCGCGGTG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	13	26	+	12.7115	1.94e-05	0.0115	CCGCCGCCGCCAGC
EGR1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	29	42	+	12.7115	1.94e-05	0.0115	GCCACACCCCCGGG
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	12.6923	1.94e-05	0.145	CGCACGTGAT
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	12.6923	1.94e-05	0.145	CGCACGTGAT
NFYA	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	23	40	+	12.0244	1.94e-05	0.0849	TGGTTTTTGATTGGCTAA
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	28	41	-	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	28	41	-	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
CREB3	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	66	79	-	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	36	49	+	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	36	49	+	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
CREB3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	74	87	+	12.3857	1.94e-05	0.206	CCGCCACGTAATTG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	13	30	+	-8.56579	1.94e-05	0.0315	GGGAGGGGTGGAGGCGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	85	102	-	-8.56579	1.94e-05	0.0315	GGGAGGGGTGGAGGCGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	88	105	-	-8.56579	1.94e-05	0.0315	GGGAGGGGACGAGGAAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	88	105	-	-8.56579	1.94e-05	0.0315	GGGAGGGGACGAGGAAAG
KLF16	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	56	66	+	12.8448	1.94e-05	0.0123	ACCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	49	59	-	12.8448	1.94e-05	0.0123	ACCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	49	59	-	12.8448	1.94e-05	0.0123	ACCGCGCCCCC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	3	17	-	12.3333	1.94e-05	0.224	CGGAGTTAGTCAGCA
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	50	59	+	12.0366	1.94e-05	0.414	CAAATCTCAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	50	59	+	12.0366	1.94e-05	0.414	CAAATCTCAG
Myog	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	20	30	-	13.7551	1.94e-05	0.106	AGCAGCTGCGT
Myog	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	95	+	13.7551	1.94e-05	0.106	AGCAGCTGCGT
HES7	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	100	111	+	7.67241	1.95e-05	0.189	GGGCACGGGCCA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	20	37	-	-8.57895	1.95e-05	0.0315	GGAGGGAACGGAGCCGAG
YY2	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	73	83	+	13.1515	1.95e-05	0.269	TTTCGCCATTA
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	13.1346	1.95e-05	0.0727	AGCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	13.1346	1.95e-05	0.0727	AGCGGAAGTC
E2F3	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	95	112	-	7.89091	1.95e-05	1	AAAAAATGCGCGTTTCCC
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	42	55	-	10.8429	1.95e-05	0.113	ATATGACGTCAGGT
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	42	55	-	10.8429	1.95e-05	0.113	ATATGACGTCAGGT
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	42	55	-	10.8429	1.95e-05	0.113	ATATGACGTCAGGT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	12.8793	1.95e-05	0.0861	GCCGGAAGTC
ETV4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.8793	1.95e-05	0.0861	GCCGGAAGCA
NR2C2	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	27	41	-	12.0857	1.95e-05	0.093	GGGGGGCTGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	74	88	+	12.0857	1.95e-05	0.093	CGAGGTGAGGGATCG
NR2C2	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	74	88	+	12.0857	1.95e-05	0.093	GGGGGGCTGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	84	98	-	12.0857	1.95e-05	0.093	CGAGGGGAAGGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	84	98	-	12.0857	1.95e-05	0.093	CGAGGGGAAGGGCCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	11	24	-	11.8448	1.95e-05	0.0221	CTCCCCGCCCCCTT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	90	107	-	-8.59211	1.95e-05	0.0315	GGAAGGAATCCACGCGGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	103	113	+	13.8511	1.95e-05	0.169	TCTGACTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	103	113	+	13.8511	1.95e-05	0.169	TCTGACTCACT
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	23	31	+	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	23	31	+	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	76	84	+	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	102	110	+	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	102	110	+	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	45	53	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	67	75	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	73	81	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	73	81	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	73	81	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	90	98	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	90	98	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	93	101	-	12.0545	1.95e-05	0.266	GTGCCCAGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	98	106	-	12.0545	1.95e-05	0.266	GTGCCCAGC
SREBF1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	82	91	-	13.6829	1.95e-05	0.472	GTCACCCGAT
SREBF1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	24	33	+	13.6829	1.95e-05	0.472	GTCACCCGAT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	2	17	-	12.4727	1.95e-05	0.0374	TTCGTCCCACGCAATC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	2	17	-	12.4727	1.95e-05	0.0374	TTCGTCCCACGCAATC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	2	17	-	12.4727	1.95e-05	0.0374	TTCGTCCCACGCAATC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	2	17	-	12.4727	1.95e-05	0.0374	TTCGTCCCACGCAATC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	49	64	+	12.4727	1.95e-05	0.0374	CCCCGCCCCCGCTGCC
BATF3	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	82	95	+	5.65152	1.95e-05	0.115	GTGTGACGTCACCT
BATF3	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	20	33	-	5.65152	1.95e-05	0.115	GTGTGACGTCACCT
SP8	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	26	37	-	12.8289	1.95e-05	0.0182	GCACCGCCCACA
USF1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	59	+	13.2245	1.95e-05	0.107	ATCACGTGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	24	34	-	13.0962	1.95e-05	0.0703	TGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	24	34	-	13.0962	1.95e-05	0.0703	TGCCTCCGGCG
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	80	96	-	7.19672	1.95e-05	0.563	AGGGCAGGGTGAGGTCT
Nr2f6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	31	-	11.3333	1.95e-05	0.252	GAGATCAAAGTTCG
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	31	-	11.3333	1.95e-05	0.252	GAGATCAAAGTTCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	-	13.1636	1.95e-05	0.0448	CCCCTGAGGCT
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	17	31	+	13.2766	1.95e-05	0.311	GGAAATGATGCCACA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	37	57	-	11.9796	1.95e-05	0.00951	GGAGGAGGACGGAGAAGGCTT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	59	79	-	11.9796	1.95e-05	0.00951	GAGGGAGGGGGAAGCTGGCAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	59	79	-	11.9796	1.95e-05	0.00951	GAGGGAGGGGGAAGCTGGCAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	59	79	-	11.9796	1.95e-05	0.00951	GAGGGAGGGGGAAGCTGGCAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	59	79	-	11.9796	1.95e-05	0.00951	GAGGGAGGGGGAAGCTGGCAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	76	96	-	11.9796	1.95e-05	0.00951	GGGGGAAAGAAGGCAAGGAAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	2	22	+	11.9796	1.95e-05	0.00951	AGAGAACGCAGAGGGAGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	36	56	+	11.9796	1.95e-05	0.00951	GAGGGAGGGGGAAGCTGGCAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.0.0	38	58	+	11.9796	1.95e-05	0.00951	CGAAGAGAAGTAGGAGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	78	98	+	11.9796	1.95e-05	0.00951	CGAAGAGAAGTAGGAGGAAGG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	54	64	+	13.1818	1.95e-05	0.0428	AAACACACCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	80	90	+	13.1818	1.95e-05	0.0428	GGGCCCACCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	3	13	-	13.1818	1.95e-05	0.0428	ACCCCCACCCA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	21	31	+	13.1148	1.95e-05	0.131	CACCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	21	31	+	13.1148	1.95e-05	0.131	CACCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	21	31	+	13.1148	1.95e-05	0.131	CACCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	26	-	13.1148	1.95e-05	0.131	CACCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	26	-	13.1148	1.95e-05	0.131	CACCGGAAACC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	36	49	+	13.4808	1.95e-05	0.163	ACTAGGTGAGTCAG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	66	79	-	7.38182	1.95e-05	0.127	AAAACGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	66	79	-	7.38182	1.95e-05	0.127	AAAACGCGGAAGCG
ZIC3	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	39	-	11.1714	1.95e-05	0.0984	CGCCCCCCGCGGGCC
Zfx	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	36	49	+	13.2121	1.95e-05	0.0317	CACGCCCTGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	66	79	-	13.2121	1.95e-05	0.0317	CACGCCCTGGCCTG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	-	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	+	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	+	13.3636	1.95e-05	0.063	CGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	-	13.3636	1.95e-05	0.063	GGCCTGAGGCT
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	2	12	+	13.3469	1.95e-05	0.232	TTTTCTAAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	32	42	-	13.3469	1.95e-05	0.232	TTTTCTAAGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	73	83	+	13.3469	1.95e-05	0.232	TTTTCTAAGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	103	113	-	13.3469	1.95e-05	0.232	TTTTCTAAGAA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	-	12.9818	1.95e-05	0.0893	CGCCCGGGGGGA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	82	101	+	7.6422	1.95e-05	0.0456	ACCCGCCACACCACACGAGG
ELK4	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	5	15	+	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	31	41	+	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	49	59	+	13.3818	1.96e-05	0.0419	TTGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	49	59	+	13.3818	1.96e-05	0.0419	TTGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	49	59	+	13.3818	1.96e-05	0.0419	TTGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	49	59	+	13.3818	1.96e-05	0.0419	TTGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	57	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	57	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	57	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	58	-	13.3818	1.96e-05	0.0419	TCGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	58	-	13.3818	1.96e-05	0.0419	TCGCTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	58	-	13.3818	1.96e-05	0.0419	TCGCTTCCGGA
ELK4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	66	-	13.3818	1.96e-05	0.0419	TTGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	77	87	-	13.3818	1.96e-05	0.0419	CGACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	77	87	-	13.3818	1.96e-05	0.0419	CGACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	88	98	+	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	88	98	+	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	110	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	110	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	110	-	13.3818	1.96e-05	0.0419	GCCCTTCCGGC
Rxra	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	15	-	7	1.96e-05	0.271	GGGGTGAAGGGCCA
Rxra	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	49	62	+	7	1.96e-05	0.271	GGGGTGAAGGGCCA
Rxra	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	66	-	7	1.96e-05	0.271	GGGGTGAAGGGCCA
Rxra	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	100	113	+	7	1.96e-05	0.271	GGGGTGAAGGGCCA
ELF1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	33	-	12.2	1.96e-05	0.0844	GCCCCGGAAGCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	52	69	+	-8.61842	1.96e-05	0.0315	GAGAGGGAGGCACGCATG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	43	-	12.6396	1.96e-05	0.142	GAGAGGAAAAGGTCA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	108	+	13.8163	1.96e-05	0.136	AACAGCTGTGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	108	+	13.8163	1.96e-05	0.136	AACAGCTGTGG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	13	22	-	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	31	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	31	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	13	22	-	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	27	36	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	27	36	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	27	36	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	27	36	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	27	36	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	27	36	-	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	31	40	-	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	33	42	-	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	73	82	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	79	88	+	12.8165	1.96e-05	0.0369	CACCCCCCCC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	84	98	-	12.6	1.96e-05	0.0974	GAGCACCCGCAGTGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	98	112	+	12.6	1.96e-05	0.0974	GGCCGCCTGCGGATA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	92	103	+	13	1.96e-05	0.0548	CGCCCTGAGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	-	13	1.96e-05	0.0548	GCCCCCCGGGCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	26	37	-	13	1.96e-05	0.0548	CGCCCTGAGCCA
SP3	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	36	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	40	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	68	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	68	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	90	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	104	+	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	11	21	-	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	25	35	-	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	25	35	-	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	49	59	-	12.8049	1.96e-05	0.0124	TCCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	49	59	-	12.8049	1.96e-05	0.0124	TCCACGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	49	59	-	12.8049	1.96e-05	0.0124	TCCACGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	79	89	-	12.8049	1.96e-05	0.0124	ACCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	98	108	-	12.8049	1.96e-05	0.0124	TCCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	98	108	-	12.8049	1.96e-05	0.0124	TCCACGCCCCG
Myod1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	35	47	+	13.6735	1.96e-05	0.12	TGCACCTGTCCTG
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	68	80	-	13.6735	1.96e-05	0.12	TGCACCTGTCCTG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	68	80	-	13.6735	1.96e-05	0.12	TGCACCTGTCCTG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	101	113	-	13.6735	1.96e-05	0.12	GCCACCTGCCGCT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	101	113	-	13.6735	1.96e-05	0.12	GCCACCTGCCGCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	25	39	+	12.8276	1.96e-05	0.00665	GCTCCACCTCTTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	25	39	+	12.8276	1.96e-05	0.00665	GCTCCACCTCTTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	25	39	+	12.8276	1.96e-05	0.00665	GCTCCACCTCTTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	25	39	+	12.8276	1.96e-05	0.00665	GCTCCACCTCTTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	27	41	+	12.8276	1.96e-05	0.00665	GGCCCGCCCCAGTTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	27	41	+	12.8276	1.96e-05	0.00665	GGCCCGCCCCAGTTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	27	41	+	12.8276	1.96e-05	0.00665	GGCCCGCCCCAGTTG
SP2	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	34	48	+	12.8276	1.96e-05	0.00665	GTTCCTCCTCCCGCT
SP2	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	56	+	12.8276	1.96e-05	0.00665	GCTCCGCCCACGTCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	58	72	+	12.8276	1.96e-05	0.00665	CCTCCTCCTCCTCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	76	90	+	12.8276	1.96e-05	0.00665	CCTCCTCCTCCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	76	90	+	12.8276	1.96e-05	0.00665	CCTCCTCCTCCTCGC
SP2	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	67	81	-	12.8276	1.96e-05	0.00665	GTTCCTCCTCCCGCT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	26	37	+	12.1636	1.96e-05	0.112	AATGATGTCACT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	26	37	+	12.1636	1.96e-05	0.112	AATGATGTCACT
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	26	37	+	12.1636	1.96e-05	0.112	AATGATGTCACT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	26	37	+	12.1636	1.96e-05	0.112	AATGATGTCACT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	26	37	+	12.1636	1.96e-05	0.112	AATGATGTCACT
SPDEF	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	55	65	+	12.9636	1.96e-05	0.206	AACCGGAAGCA
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	60	-	12.9636	1.96e-05	0.206	AACCGGAAGCA
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	60	-	12.9636	1.96e-05	0.206	AACCGGAAGCA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	60	-	12.9636	1.96e-05	0.206	AACCGGAAGCA
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	60	-	12.9636	1.96e-05	0.206	AACCGGAAGCA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	8	21	-	9.26531	1.96e-05	0.0605	GGGCGGCTAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	8	21	-	9.26531	1.96e-05	0.0605	GGGCGGCTAGGGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	75	92	-	-8.63158	1.96e-05	0.0315	AAAAGAAGGCAAGGAAAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	51	59	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	51	59	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	51	59	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	51	59	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	51	59	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	76	84	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	76	84	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	76	84	+	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	31	39	-	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	34	42	-	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	34	42	-	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	82	90	-	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	82	90	-	13.3269	1.96e-05	0.442	AAACCGCAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	82	90	-	13.3269	1.96e-05	0.442	AAACCGCAG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	13	29	+	8.10909	1.96e-05	0.0164	CAGGCCCCGCCCTGCCG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	13	29	+	8.10909	1.96e-05	0.0164	CAGGCCCCGCCCTGCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	68	84	-	8.10909	1.96e-05	0.0164	GCGACTCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	68	84	-	8.10909	1.96e-05	0.0164	GCGACTCCGCCCCCGCC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	48	63	+	-3.26923	1.96e-05	0.317	CGTCGCCCCACGCCGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	15	25	+	13.3273	1.96e-05	0.721	AAGCTCTCAGG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	15	25	+	13.3273	1.96e-05	0.721	AAGCTCTCAGG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.9828	1.96e-05	0.0709	GCCGGAAGCG
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	2	12	+	13.3462	1.96e-05	0.251	GCTATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	2	12	+	13.3462	1.96e-05	0.251	GCTATGAGTCA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	65	75	+	13.7551	1.96e-05	0.138	AAGTGAGTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	32	42	-	13.7551	1.96e-05	0.138	AAGTGAGTCAT
Esrra	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	55	65	+	11.0364	1.96e-05	0.862	CTGAAGGTCAC
NRF1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	22	32	-	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	34	44	+	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	34	44	+	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	57	67	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	57	67	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	83	93	+	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	83	93	+	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	83	93	+	12.6727	1.96e-05	0.0105	CCGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	89	99	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	89	99	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	89	99	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	89	99	+	12.6727	1.96e-05	0.0105	CCGGCTGCGCG
DUXA	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	50	62	+	13.1129	1.96e-05	1	CTGAGCCAATCAA
DUXA	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	4	16	-	13.1129	1.96e-05	1	CTGAGCCAATCAA
DUXA	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	53	65	-	13.1129	1.96e-05	1	CTGAGCCAATCAA
TFEB	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	13	1.96e-05	0.119	CGCACGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	13	1.96e-05	0.119	CGCACGTGAC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	27	41	-	11.4262	1.96e-05	0.0362	GGCCCCGCCCCCGCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	27	41	-	11.4262	1.96e-05	0.0362	GGCCCCGCCCCCGCG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	62	76	+	11.4262	1.96e-05	0.0362	GGCCCCGCCCCCGCG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	62	76	+	11.4262	1.96e-05	0.0362	GGCCCCGCCCCCGCG
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	97	113	-	10.1724	1.96e-05	0.882	CGGTACACGCTGTCCAC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	97	113	-	10.1724	1.96e-05	0.882	CGGTACACGCTGTCCAC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	+	12.9672	1.96e-05	0.0554	GGCCCTAGGGGGT
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	-	13.7021	1.96e-05	0.169	TGTGAGTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	+	13.7021	1.96e-05	0.169	TGTGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	-	13.7021	1.96e-05	0.169	TGTGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	-	13.7021	1.96e-05	0.169	TGTGAGTCACC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	69	82	-	11.8276	1.96e-05	0.0221	GGCCCCGCCCCGTC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	6	20	+	12.6727	1.96e-05	0.266	GGAAAGGGAAAGAAT
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	9	23	+	12.6727	1.96e-05	0.266	TGAGAGTGAAAGAAA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	36	49	+	7.36364	1.96e-05	0.127	GAAAGGAGGAACTG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	36	49	+	7.36364	1.96e-05	0.127	GAAAGGAGGAACTG
RORA	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	88	97	-	13.5506	1.96e-05	0.864	ATGTAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	28	37	+	13.5506	1.96e-05	0.864	ATGTAGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	28	37	+	13.5506	1.96e-05	0.864	ATGTAGGTCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	35	45	-	12.1897	1.97e-05	0.0649	CCTCCCACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	35	45	-	12.1897	1.97e-05	0.0649	CCTCCCACGCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	52	62	+	12.1897	1.97e-05	0.0649	ACACCCACGTA
EGR2	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	70	80	+	12.1897	1.97e-05	0.0649	CCTCCCACGCC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	67	77	-	12.1897	1.97e-05	0.0649	ACACCCACGTA
CTCF	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	24	42	+	11.4262	1.97e-05	0.083	GGGCCCGCGGGGGGCGGGG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	2	16	+	11.1571	1.97e-05	0.0984	GCCGCCCTGCCGAGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	33	47	+	11.1571	1.97e-05	0.0984	GCCCTCCTTCTGCGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	99	113	-	11.1571	1.97e-05	0.0984	GCCGCCCTGCCGAGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	15	26	-	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	15	26	-	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	15	26	-	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	15	26	-	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	36	47	+	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	66	77	-	12.8158	1.97e-05	0.0182	GCCACCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	66	77	-	12.8158	1.97e-05	0.0182	GCCACCCCCGCC
SP8	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	68	79	-	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	89	100	+	12.8158	1.97e-05	0.0182	ACTACGCCCCCA
ETV3	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.9296	1.97e-05	0.0826	AGCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.9296	1.97e-05	0.0826	AGCGGAAGTG
T	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	24	39	-	10.9808	1.97e-05	1	TAACACGTGGATGACA
T	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	24	39	-	10.9808	1.97e-05	1	TAACACGTGGATGACA
SCRT1	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	23	37	-	11.0492	1.97e-05	0.494	GGGAAACAGGTGGTG
GLIS2	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	13	26	-	11.2623	1.97e-05	0.176	TGCCTCCCACGGAG
GLIS2	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	89	102	+	11.2623	1.97e-05	0.176	TGCCTCCCACGGAG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	84	-	12.1818	1.97e-05	0.0844	ACGCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	84	-	12.1818	1.97e-05	0.0844	ACGCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	84	-	12.1818	1.97e-05	0.0844	ACGCCGGAAGTT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	84	-	12.1818	1.97e-05	0.0844	ACGCCGGAAGTT
ELK1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.8085	1.97e-05	0.0537	AGCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	38	48	-	12.6909	1.97e-05	0.102	ACCGGGAAGTA
ELF5	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	67	77	+	12.6909	1.97e-05	0.102	ACCGGGAAGTA
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	17	30	+	5.62121	1.97e-05	0.115	TTCTGACGTCACAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	11	21	+	13.25	1.97e-05	0.00771	GCCCCGCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	11	21	+	13.25	1.97e-05	0.00771	GCCCCGCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	7	17	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	7	17	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	26	36	-	13.25	1.97e-05	0.00771	TTCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	26	36	-	13.25	1.97e-05	0.00771	TTCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	26	36	-	13.25	1.97e-05	0.00771	TTCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	30	40	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	30	40	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	43	53	+	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	43	53	-	13.25	1.97e-05	0.00771	TTCCCTCCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	62	72	+	13.25	1.97e-05	0.00771	TTCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	54	64	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	54	64	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	66	76	+	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	66	76	+	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	62	72	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	62	72	-	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	103	113	+	13.25	1.97e-05	0.00771	TCCCCTCCTCT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	94	104	-	13.25	1.97e-05	0.00771	GCCCCGCCTTT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	9	19	-	13.4286	1.97e-05	0.0814	GTCATGTGAGC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	9	19	-	13.4286	1.97e-05	0.0814	GTCATGTGAGC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	9	19	-	13.4286	1.97e-05	0.0814	GTCATGTGAGC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	9	19	-	13.4286	1.97e-05	0.0814	GTCATGTGAGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	9	25	+	8.09091	1.97e-05	0.0164	TAGGCCCCGGCCCTCGT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	7	23	-	8.09091	1.97e-05	0.0164	CCAGCCACTCCCATGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	7	23	-	8.09091	1.97e-05	0.0164	CCAGCCACTCCCATGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	7	23	-	8.09091	1.97e-05	0.0164	CCAGCCACTCCCATGCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	7	23	-	8.09091	1.97e-05	0.0164	CCAGCCACTCCCATGCA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	67	80	+	6.97561	1.97e-05	0.271	GGTGTGAAGGGTCA
Arntl	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	8	17	-	13.0164	1.97e-05	0.144	CGGCACGTGC
Arntl	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	31	40	-	13.0164	1.97e-05	0.144	CGGCACGTGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	75	84	+	13.0164	1.97e-05	0.144	CGGCACGTGC
Arntl	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	98	107	+	13.0164	1.97e-05	0.144	CGGCACGTGC
NFKB1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	12	24	-	6.79592	1.97e-05	0.233	CGGGGAACCCCAG
NFKB1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	91	103	+	6.79592	1.97e-05	0.233	CGGGGAACCCCAG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	12	22	-	13.2041	1.97e-05	0.107	ATCACGTGACG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	12	22	-	13.2041	1.97e-05	0.107	ATCACGTGACG
PROX1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	10	21	+	11.7273	1.97e-05	1	GATGACGTCTCA
CREB3	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	58	71	-	12.3571	1.97e-05	0.206	TTGCAACGTCACTA
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	44	57	+	12.3571	1.97e-05	0.206	TTGCAACGTCACTA
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	44	57	+	12.3571	1.97e-05	0.206	TTGCAACGTCACTA
ZEB1	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	4	12	+	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	9	17	+	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	11	19	+	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	94	102	+	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	96	104	-	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	96	104	-	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	96	104	-	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	96	104	-	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	103	111	-	14.0182	1.97e-05	0.267	CCGCACCTG
ZEB1	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	103	111	-	14.0182	1.97e-05	0.267	CCGCACCTG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	86	96	-	13.5345	1.97e-05	0.0383	GCGCGGGAACC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	86	96	-	13.5345	1.97e-05	0.0383	GCGCGGGAACC
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	19	29	+	13.5345	1.97e-05	0.0383	GCGCGGGAACC
E2F6	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	73	83	+	13.5345	1.97e-05	0.0383	GCGCGGGAGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	-	12.8673	1.97e-05	0.0857	AGCCCGCGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	+	12.8673	1.97e-05	0.0857	AGCCCGCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	+	12.8673	1.97e-05	0.0857	AGCCCGCGGGGA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	65	75	+	13.082	1.97e-05	0.131	AAGCGGAAACG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	65	75	+	13.082	1.97e-05	0.131	AAGCGGAAACG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	14	24	-	13.082	1.97e-05	0.131	AAGCGGAAACG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	8	28	-	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	8	28	-	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	42	62	+	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	42	62	+	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
IRF1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	53	73	-	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
IRF1	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	87	107	+	11.8226	1.97e-05	0.139	CCTGGGTTTCGGTTTCTTGCA
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	25	39	+	13.2553	1.97e-05	0.311	CGTCGTGACGTCATC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	76	90	-	13.2553	1.97e-05	0.311	CGTCGTGACGTCATC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	+	12.8103	1.97e-05	0.0547	GGCCCGCGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	+	12.8103	1.97e-05	0.0547	TGCCTCGGAGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	+	12.8103	1.97e-05	0.0547	TGCCTCGGAGGCG
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	22	34	+	12.0952	1.97e-05	0.4	ACAGGGCACGTGG
Hes2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	22	34	+	12.0952	1.97e-05	0.4	ACAGGGCACGTGG
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	57	-	12.0952	1.97e-05	0.4	ACAGGGCACGTGG
Hes2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	57	-	12.0952	1.97e-05	0.4	ACAGGGCACGTGG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	-	12.9508	1.97e-05	0.0554	AGCCCGTCGGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	+	12.9508	1.97e-05	0.0554	AGCCCGTCGGGCG
TEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	+	13	1.97e-05	1	CCTTACGTAATT
NR2C2	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	44	58	-	12.0571	1.97e-05	0.0934	GGAGGGGAAAGGGGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	2	16	+	10.0517	1.97e-05	0.0302	CCCCGCCCCGGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	2	16	+	10.0517	1.97e-05	0.0302	CCCCGCCCCGGCGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	1	21	-	11.9592	1.97e-05	0.00954	GGAGCGGGGTGGGCGGGGAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	14	34	-	11.9592	1.97e-05	0.00954	GGGGGCTGGGGTGGCGGGGGC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	21	41	-	11.9592	1.97e-05	0.00954	GGAGGGCGGGGGGAGGGAGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	33	53	-	11.9592	1.97e-05	0.00954	GGGGGGGCGGGCGGAGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	33	53	-	11.9592	1.97e-05	0.00954	GGGGGGGCGGGCGGAGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	33	53	-	11.9592	1.97e-05	0.00954	GGGGGGGCGGGCGGAGGGAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	33	53	-	11.9592	1.97e-05	0.00954	GGGGGGGCGGGCGGAGGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	51	71	-	11.9592	1.97e-05	0.00954	GATGGCGGTGGGGAGGAGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	51	71	-	11.9592	1.97e-05	0.00954	GATGGCGGTGGGGAGGAGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	51	71	-	11.9592	1.97e-05	0.00954	GATGGCGGTGGGGAGGAGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	75	95	-	11.9592	1.97e-05	0.00954	GAGGGTGGGGGACGCGAAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	19	39	+	11.9592	1.97e-05	0.00954	GGGGCGGGGCGAGAAGGAAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	44	64	+	11.9592	1.97e-05	0.00954	GATGGCGGTGGGGAGGAGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	74	94	+	11.9592	1.97e-05	0.00954	GGAGGGCGGGGGGAGGGAGCG
Myb	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	40	49	+	13.7705	1.97e-05	0.823	GTAACTGTCA
Myb	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	98	107	-	13.7705	1.97e-05	0.823	GTAACTGTCA
HOXD13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	48	57	+	13.4286	1.98e-05	1	CCAATAAAAG
HOXD13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	48	57	+	13.4286	1.98e-05	1	CCAATAAAAG
HOXD13	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	49	58	+	13.4286	1.98e-05	1	CCAATAAAAG
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	81	94	+	11.5303	1.98e-05	0.253	ATACCACGTAACCC
ESX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	10.9861	1.98e-05	1	TCCAATTAAC
ESX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	10.9861	1.98e-05	1	TCCAATTAAC
OLIG3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	12.6897	1.98e-05	1	AGCATATGTT
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	12.6897	1.98e-05	1	AGCATATGTT
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	12.6897	1.98e-05	1	AGCATATGTT
Klf4	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	37	46	-	12.7857	1.98e-05	0.0124	TGGGTGGGGA
Klf4	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	51	60	-	12.7857	1.98e-05	0.0124	TGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	69	78	+	12.7857	1.98e-05	0.0124	TGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	69	78	+	12.7857	1.98e-05	0.0124	TGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	69	78	+	12.7857	1.98e-05	0.0124	TGGGTGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	69	78	+	12.7857	1.98e-05	0.0124	TGGGTGGGGA
EHF	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	44	-	12.6557	1.98e-05	0.103	ATCCCGGAAGCG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	88	105	+	-8.69737	1.98e-05	0.0315	GAAGGGCGGGCAGCAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	77	94	-	-8.69737	1.98e-05	0.0315	GGGAGAGGCGCAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	77	94	-	-8.69737	1.98e-05	0.0315	GGGAGAGGCGCAGGAGGG
HEY1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	13.2727	1.98e-05	0.0969	CCCACGTGTC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	13.2727	1.98e-05	0.0969	CCCACGTGTC
HEY1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	13.2727	1.98e-05	0.0969	CCCACGTGTC
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	-	13	1.98e-05	0.0703	CGCCTCAGGGA
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	+	13	1.98e-05	0.0703	CGCCTCAGGGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	26	40	+	12.8103	1.98e-05	0.0067	GCCCCTCCCTGTTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	26	40	+	12.8103	1.98e-05	0.0067	GCCCCTCCCTGTTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	49	+	12.8103	1.98e-05	0.0067	CCCCCTCCCACTTCG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	40	54	+	12.8103	1.98e-05	0.0067	CGCCCGCCCCAGCAC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	48	62	-	12.8103	1.98e-05	0.0067	GCCCCTCCCTGTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	48	62	-	12.8103	1.98e-05	0.0067	GCCCCTCCCTGTTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	61	75	-	12.8103	1.98e-05	0.0067	CGCCCGCCCCAGCAC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	61	75	-	12.8103	1.98e-05	0.0067	CGCCCGCCCCAGCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	41	54	+	11.8103	1.98e-05	0.0221	AGTCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	41	54	+	11.8103	1.98e-05	0.0221	AGTCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	41	54	+	11.8103	1.98e-05	0.0221	AGTCCCGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	61	74	-	11.8103	1.98e-05	0.0221	AGTCCCGCCCCCAG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	11	25	-	11.4098	1.98e-05	0.0362	AGCCCCGCCCCTCCT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	11	25	-	11.4098	1.98e-05	0.0362	AGCCCCGCCCCTCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	21	35	-	11.4098	1.98e-05	0.0362	GGCCCCGCCCCCGGA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	21	35	-	11.4098	1.98e-05	0.0362	GGCCCCGCCCCCGGA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	26	40	-	11.4098	1.98e-05	0.0362	GGCCCCGCCCCCGGA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	21	39	+	12.629	1.98e-05	0.137	AAACTCAGGGAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	21	39	+	12.629	1.98e-05	0.137	AAACTCAGGGAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	63	81	+	12.629	1.98e-05	0.137	AAACTCAGGGAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	63	81	+	12.629	1.98e-05	0.137	AAACTCAGGGAGGCGGGGC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	13.4098	1.98e-05	0.333	GGCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	13.4098	1.98e-05	0.333	GGCACGTGGC
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	57	71	-	11.0328	1.98e-05	0.494	CAGCTACAGGTAGCA
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	57	71	-	11.0328	1.98e-05	0.494	CAGCTACAGGTAGCA
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	57	71	-	11.0328	1.98e-05	0.494	CAGCTACAGGTAGCA
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	57	71	-	11.0328	1.98e-05	0.494	CAGCTACAGGTAGCA
GCM2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	14	23	+	13.0164	1.98e-05	0.718	CATGCGGGCT
GCM2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	14	23	+	13.0164	1.98e-05	0.718	CATGCGGGCT
BATF3	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	33	46	+	5.60606	1.98e-05	0.115	CGCTGACGTAACCT
BATF3	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	74	87	+	5.60606	1.98e-05	0.115	CGCTGACGTAACCT
BATF3	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	28	41	-	5.60606	1.98e-05	0.115	CGCTGACGTAACCT
BATF3	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	69	82	-	5.60606	1.98e-05	0.115	CGCTGACGTAACCT
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	1	8	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	4	11	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	4	11	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	1	8	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	8	15	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	4	11	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	4	11	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	8	15	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	26	33	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	31	38	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	26	33	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	31	38	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	55	62	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	62	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	55	62	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	62	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	55	62	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	62	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	55	62	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	62	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	84	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	82	89	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	84	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	82	89	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	107	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	107	114	+	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	107	-	12.2237	1.98e-05	0.384	GCACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	107	114	-	12.2237	1.98e-05	0.384	GCACGTGC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	46	57	+	12.9818	1.98e-05	0.0548	GGCCCCAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	12	23	-	12.9818	1.98e-05	0.0548	CGCCCCCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	12	23	-	12.9818	1.98e-05	0.0548	CGCCCCCGGCCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	12	23	-	12.9818	1.98e-05	0.0548	CGCCCCCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	12	23	-	12.9818	1.98e-05	0.0548	CGCCCCCGGCCT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	61	74	+	10.8	1.98e-05	0.114	GTGTTACGTCACGG
IRF8	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	72	85	+	3.32727	1.98e-05	0.507	AGGAAATTGAAACT
Znf423	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	14	28	+	8.73034	1.98e-05	0.175	GCAACCCTGGAGGCC
Znf423	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	87	101	-	8.73034	1.98e-05	0.175	GCAACCCTGGAGGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	71	84	-	12.6731	1.98e-05	0.0117	TCTCCACCCACTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	71	84	-	12.6731	1.98e-05	0.0117	TCTCCACCCACTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	71	84	-	12.6731	1.98e-05	0.0117	TCTCCACCCACTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	71	84	-	12.6731	1.98e-05	0.0117	TCTCCACCCACTGC
POU4F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	46	59	+	12.7087	1.98e-05	1	GTGCATAAATAAAG
POU4F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	46	59	+	12.7087	1.98e-05	1	GTGCATAAATAAAG
KLF16	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	3	13	+	12.8103	1.98e-05	0.0123	CCCGCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	68	78	+	12.8103	1.98e-05	0.0123	CCCGCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	77	87	+	12.8103	1.98e-05	0.0123	CCCGCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	15	25	-	12.8103	1.98e-05	0.0123	CCCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	15	25	-	12.8103	1.98e-05	0.0123	CCCGCGCCCCC
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	72	90	-	12.6452	1.98e-05	0.671	TGCCCTGAACTGGCCTGGG
ERF	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	13.1143	1.98e-05	0.0792	ACAGGAAGTA
ERF	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	13.1143	1.98e-05	0.0792	ACAGGAAGTA
NFKB1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	56	68	+	6.77551	1.98e-05	0.233	AGGGGGTTCCCAC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	+	11.8485	1.98e-05	0.125	GGTTACCGTGACAATG
TCF3	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	15	24	+	13.3077	1.98e-05	0.404	CACACCTGGG
TCF3	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	91	100	-	13.3077	1.98e-05	0.404	CACACCTGGG
MTF1	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	75	88	+	9.62195	1.98e-05	0.5	GGTGCCCACGGCAC
MTF1	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	27	40	-	9.62195	1.98e-05	0.5	GGTGCCCACGGCAC
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	13.3788	1.98e-05	0.171	ATCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	13.3788	1.98e-05	0.171	ATCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	13.3788	1.98e-05	0.171	ATCACGTGGC
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	43	52	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	43	52	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	43	52	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	43	52	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	96	105	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	96	105	-	13.5393	1.98e-05	0.871	CTGGGCTGAT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	+	13.7455	1.98e-05	0.144	GCTGACTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	+	13.7455	1.98e-05	0.144	GCTGACTCAGC
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	-	12.9344	1.99e-05	0.0554	CGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	-	12.9344	1.99e-05	0.0554	CGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	-	12.9344	1.99e-05	0.0554	CGCCGTGGGGGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	+	12.9344	1.99e-05	0.0554	CGCCGTGGGGGCG
HNF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	14	28	+	12.5065	1.99e-05	0.453	GGTTAACCATTTACT
HNF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	14	28	+	12.5065	1.99e-05	0.453	GGTTAACCATTTACT
E2F4	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	40	50	-	13.6207	1.99e-05	0.0448	GGGCGCGAAAA
E2F4	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	65	75	+	13.6207	1.99e-05	0.0448	GGGCGCGAAAA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	17	34	-	-8.73684	1.99e-05	0.0315	GAAGGGAGGGCTGCAGGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	42	59	+	-8.73684	1.99e-05	0.0315	GGAAGGGCGCCAGGACTG
Myog	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	5	15	-	13.7347	1.99e-05	0.106	CGCAGCTGCCG
Myog	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	32	+	13.7347	1.99e-05	0.106	GGCAGCTGCCT
Myog	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	31	-	13.7347	1.99e-05	0.106	GGCAGCTGCCT
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	79	89	-	13.7347	1.99e-05	0.106	CGCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	87	97	-	13.7347	1.99e-05	0.106	CGCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	110	+	13.7347	1.99e-05	0.106	CGCAGCTGCCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	110	+	13.7347	1.99e-05	0.106	CGCAGCTGCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	24	38	-	10.0345	1.99e-05	0.0302	CTCCGCCCCCACGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	46	60	-	10.0345	1.99e-05	0.0302	CTCCGCCCCCACGGC
NFYA	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	23	40	+	11.9756	1.99e-05	0.085	CGCGCTCTGATTGGAACT
NFYA	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	43	60	+	11.9756	1.99e-05	0.085	CGCGCTCTGATTGGAACT
NFYA	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	55	72	-	11.9756	1.99e-05	0.085	CGCGCTCTGATTGGAACT
NFYA	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	75	92	-	11.9756	1.99e-05	0.085	CGCGCTCTGATTGGAACT
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	29	43	+	12.0429	1.99e-05	0.0934	GCGGGGCGGGGGCCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	29	43	+	12.0429	1.99e-05	0.0934	GCGGGGCGGGGGCCA
Zfx	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	47	60	+	13.1818	1.99e-05	0.0319	CCGCGCCCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	55	68	-	13.1818	1.99e-05	0.0319	CCGCGCCCGGCCTT
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	55	68	-	13.1818	1.99e-05	0.0319	CCGCGCCCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	55	68	-	13.1818	1.99e-05	0.0319	CCGCGCCCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	55	68	-	13.1818	1.99e-05	0.0319	CCGCGCCCGGCCTT
RREB1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	46	65	-	7.58716	1.99e-05	0.0462	CCCGCCCCCACGCCCTCCCA
RREB1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	50	69	+	7.58716	1.99e-05	0.0462	CCCGCCCCCACGCCCTCCCA
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	6	15	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	6	15	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	11	20	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	17	26	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	31	40	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	47	56	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	47	56	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	65	74	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	65	74	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	70	79	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	70	79	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	92	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	89	98	+	12.8073	1.99e-05	0.0369	GCCCCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	100	109	-	12.8073	1.99e-05	0.0369	GCCCCCCCGC
HINFP	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	69	80	-	13.0303	1.99e-05	0.109	CAGCGTCCCCCG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.0.0	92	103	-	13.0303	1.99e-05	0.109	CAACGTGCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	98	109	-	13.0303	1.99e-05	0.109	CAGCGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	98	109	-	13.0303	1.99e-05	0.109	CAGCGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	98	109	-	13.0303	1.99e-05	0.109	CAGCGTCCCCCG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	98	109	-	13.0303	1.99e-05	0.109	CAGCGTCCCCCG
Stat4	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	3	16	+	13.3276	1.99e-05	0.188	TTTCTAAGAAAACA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	29	42	+	13.3276	1.99e-05	0.188	CTGCCTGGAAACGG
Stat4	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	28	41	-	13.3276	1.99e-05	0.188	TTTCTAAGAAAACA
Stat4	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	74	87	+	13.3276	1.99e-05	0.188	TTTCTAAGAAAACA
Stat4	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	99	112	-	13.3276	1.99e-05	0.188	TTTCTAAGAAAACA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	-	12.9344	1.99e-05	0.064	AGCCCTCCAGGGA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	+	12.9344	1.99e-05	0.064	AGCCCTCCAGGGA
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	12.3265	1.99e-05	0.0959	ATCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	12.3265	1.99e-05	0.0959	ATCACGTGGC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	12.3265	1.99e-05	0.0959	ATCACGTGGC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	-	13.1571	1.99e-05	0.173	GACAGCTGTT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	+	13.7885	1.99e-05	0.214	GTCACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	+	13.7885	1.99e-05	0.214	GTCACGTGAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	23	39	-	8.05455	1.99e-05	0.0165	ACGGCCCCGCCCCGAGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	23	39	-	8.05455	1.99e-05	0.0165	ACGGCCCCGCCCCGAGT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	1	16	-	12.4364	1.99e-05	0.0374	CCACCCCCACCCCTCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	19	34	-	12.4364	1.99e-05	0.0374	TCCCGCCCACGGCTGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	46	61	+	12.4364	1.99e-05	0.0374	CCACCCCCACCCCTCT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	46	61	+	12.4364	1.99e-05	0.0374	CCACCCCCACCCCTCT
Znf423	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	85	99	+	8.7191	1.99e-05	0.175	CGGCCCTAGGGGGTC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	94	108	+	8.7191	1.99e-05	0.175	GCCAGCCTGGGTGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	7	27	-	8.35714	1.99e-05	0.205	ATTAGAACCGAGGCCAACTTC
REST	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	63	83	-	8.35714	1.99e-05	0.205	ATTAGAACCGAGGCCAACTTC
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	32	52	+	8.35714	1.99e-05	0.205	ATTAGAACCGAGGCCAACTTC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	32	52	+	8.35714	1.99e-05	0.205	ATTAGAACCGAGGCCAACTTC
REST	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	88	108	+	8.35714	1.99e-05	0.205	ATTAGAACCGAGGCCAACTTC
RXRB	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	15	-	5.25455	1.99e-05	0.387	GGGGTGAAGGGCCA
RXRB	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	66	-	5.25455	1.99e-05	0.387	GGGGTGAAGGGCCA
RXRB	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	49	62	+	5.25455	1.99e-05	0.387	GGGGTGAAGGGCCA
RXRB	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	100	113	+	5.25455	1.99e-05	0.387	GGGGTGAAGGGCCA
NFKB2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	1	13	+	11.6667	2e-05	0.225	CGGGGGAATCCCT
NFKB2	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	25	37	+	11.6667	2e-05	0.225	AGGGAGAGCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	102	114	-	11.6667	2e-05	0.225	CGGGGGAATCCCT
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	+	12.8571	2e-05	0.0857	AGCCCTGAGGCT
TFAP2C	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	-	12.8571	2e-05	0.0857	AGCCGCGGGGCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	+	12.8571	2e-05	0.0857	AGCCGCGGGGCA
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	13.803	2e-05	1	GACATATGCT
IRF9	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	20	34	+	2.58182	2e-05	0.484	ATCACAACAGAAACT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	8	18	+	13.3636	2e-05	0.0419	TCATTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	8	18	+	13.3636	2e-05	0.0419	TCATTTCCGGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	2	16	+	12.7931	2e-05	0.00673	CTCCCGCCTCAGCGG
SP2	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	26	40	+	12.7931	2e-05	0.00673	CCACCGCCTCCTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	9	23	-	12.7931	2e-05	0.00673	CCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	9	23	-	12.7931	2e-05	0.00673	CCACCGCCTCCCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	9	23	-	12.7931	2e-05	0.00673	CCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	9	23	-	12.7931	2e-05	0.00673	CCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	9	23	-	12.7931	2e-05	0.00673	CCACCGCCTCCCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	18	32	-	12.7931	2e-05	0.00673	AGCCCGCCCTCGCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	18	32	-	12.7931	2e-05	0.00673	AGCCCGCCCTCGCCA
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	4	19	-	6.25862	2e-05	0.294	TACACACAATGCACGT
RFX2	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	+	9.48571	2e-05	0.129	TGGAACTATGGCAACG
RFX2	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	-	9.48571	2e-05	0.129	TGGAACTATGGCAACG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	22	42	-	11.9388	2e-05	0.00961	CGGTGAGGGAGGGAGGGAGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	35	55	-	11.9388	2e-05	0.00961	TGGGCAGCAGAGAGAGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	36	56	-	11.9388	2e-05	0.00961	GAAGGTCAAAGGAAGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	76	96	-	11.9388	2e-05	0.00961	GAGGGAGAGGCGCAGGAGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	76	96	-	11.9388	2e-05	0.00961	GAGGGAGAGGCGCAGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	92	112	+	11.9388	2e-05	0.00961	CGAGCCGGGGCAGGAAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	92	112	+	11.9388	2e-05	0.00961	CGAGCCGGGGCAGGAAGAGGA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	68	85	+	-8.77632	2e-05	0.0315	GGAAGAAAGGCTAGCGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	67	84	-	-8.77632	2e-05	0.0315	GAAAGAAGGGAAGCTGTT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	67	84	-	-8.77632	2e-05	0.0315	GAAAGAAGGGAAGCTGTT
NRF1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	3	13	+	12.6364	2e-05	0.0106	GCGGGGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	59	69	-	12.6364	2e-05	0.0106	AAGCATGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	59	69	-	12.6364	2e-05	0.0106	AAGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	59	69	-	12.6364	2e-05	0.0106	AAGCATGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	76	86	+	12.6364	2e-05	0.0106	AAGCATGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	102	112	-	12.6364	2e-05	0.0106	GCGGGGGCGCA
GLIS2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	47	60	+	11.2295	2e-05	0.176	ACCCCCCCACGGTC
GLIS2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	55	68	-	11.2295	2e-05	0.176	ACCCCCCCACGGTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	2	13	-	12.7895	2e-05	0.0183	CCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	2	13	-	12.7895	2e-05	0.0183	CCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	45	+	12.7895	2e-05	0.0183	CCCCCGCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	45	+	12.7895	2e-05	0.0183	CCCCCGCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	34	45	-	12.7895	2e-05	0.0183	CCCCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	34	45	-	12.7895	2e-05	0.0183	CCCCCGCCCCGT
Esrrg	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	2	11	-	13.3061	2e-05	0.702	AGAAGGTCAT
Esrrg	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	105	114	+	13.3061	2e-05	0.702	AGAAGGTCAT
Esrrg	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	105	114	+	13.3061	2e-05	0.702	AGAAGGTCAT
ELF4	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	24	-	12	2e-05	0.073	AACCCGGAAACG
ELF4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	33	-	12	2e-05	0.073	GCCCCGGAAGCA
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	25	-	12.1636	2e-05	0.0844	GATCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	26	37	+	12.1636	2e-05	0.0844	TCCCCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	26	37	+	12.1636	2e-05	0.0844	TCCCCGGAAGCA
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	43	54	+	12.1636	2e-05	0.0844	CGCCCGGAAGTT
ELF1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	57	68	+	12.1636	2e-05	0.0844	TCCCCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	58	-	12.1636	2e-05	0.0844	TCCCCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	58	-	12.1636	2e-05	0.0844	TCCCCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	72	-	12.1636	2e-05	0.0844	CGCCCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	72	-	12.1636	2e-05	0.0844	CGCCCGGAAGTT
ELF1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	89	-	12.1636	2e-05	0.0844	TCCCCGGAAGCA
EGR3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	31	45	+	10.0172	2e-05	0.0302	CCCCTCCCCCGCCAC
EGR3	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	27	41	-	10.0172	2e-05	0.0302	CCACACCCACGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	27	41	-	10.0172	2e-05	0.0302	CCCCCCCCCCGCCAA
EGR3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	51	65	+	10.0172	2e-05	0.0302	CCCCTCCCCCGCCAC
EGR3	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	63	77	+	10.0172	2e-05	0.0302	CGCCGCCGCCGCGCT
EGR3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	50	64	-	10.0172	2e-05	0.0302	CCCCTCCCCCGCCAC
EGR3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	70	84	-	10.0172	2e-05	0.0302	CCCCTCCCCCGCCAC
Myog	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	52	+	13.7143	2e-05	0.106	AGCAGCTGGCC
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	63	73	-	13.7143	2e-05	0.106	AGCAGCTGGCC
Myog	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	63	73	-	13.7143	2e-05	0.106	AGCAGCTGGCC
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	63	73	-	13.7143	2e-05	0.106	AGCAGCTGGCC
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	63	73	-	13.7143	2e-05	0.106	AGCAGCTGGCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	25	45	-	8.34694	2e-05	0.205	GGCAGGCCTGGGGACAGAGGC
PAX9	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	1	17	+	5.6	2e-05	0.463	CGTCGTGGTTGGCTGGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	39	52	-	9.85106	2e-05	0.0959	CCCCGCCCGCCGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	39	52	-	9.85106	2e-05	0.0959	CCCCGCCCGCCGTG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	39	52	-	9.85106	2e-05	0.0959	CCCCGCCCGCCGTG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	36	46	-	13.7273	2e-05	0.77	CAGTAAACACA
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	47	57	+	13.7273	2e-05	0.77	CAGTAAACACA
ELF3	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	7	19	-	11.4655	2e-05	0.122	GAGCAGGAAGTGT
ELF3	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	96	108	+	11.4655	2e-05	0.122	GAGCAGGAAGTGT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	9	22	-	12.6538	2e-05	0.0118	GCGCTGCCCCCGGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	13	29	-	8.03636	2e-05	0.0165	AGGGCCCCGCCCCAGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	13	29	-	8.03636	2e-05	0.0165	AGGGCCCCGCCCCAGCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	13	29	-	8.03636	2e-05	0.0165	AGGGCCCCGCCCCAGCA
SP4	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	22	38	-	8.03636	2e-05	0.0165	GGTGCCCCGCCCTCACC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	77	93	+	8.03636	2e-05	0.0165	GGTGCCCCGCCCTCACC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	77	93	+	8.03636	2e-05	0.0165	GGTGCCCCGCCCTCACC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	77	93	+	8.03636	2e-05	0.0165	GGTGCCCCGCCCTCACC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	33	50	+	-8.80263	2e-05	0.0315	TGGGGGAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	33	50	+	-8.80263	2e-05	0.0315	TGGGGGAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	33	50	-	-8.80263	2e-05	0.0315	TGGGGGAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	33	50	-	-8.80263	2e-05	0.0315	TGGGGGAGGGCAGGAGGC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	-	12.9455	2.01e-05	0.0893	TGCCTGCGGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	+	13.3455	2.01e-05	0.063	AGCCTGGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	+	13.3455	2.01e-05	0.063	AGCCTGGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	-	13.3455	2.01e-05	0.063	AGCCTGGGGCT
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	84	-	11.9836	2.01e-05	0.073	ACGCCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	84	-	11.9836	2.01e-05	0.073	ACGCCGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	84	-	11.9836	2.01e-05	0.073	ACGCCGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	84	-	11.9836	2.01e-05	0.073	ACGCCGGAAGTT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	-	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	-	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	-	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	-	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	+	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	+	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	+	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	+	12.9808	2.01e-05	0.0703	CGCCTGAGGGA
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	11	24	-	11.7759	2.01e-05	0.0221	CTTCACGCCCCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	91	104	+	11.7759	2.01e-05	0.0221	CTTCACGCCCCCCC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	15	26	-	12.9429	2.01e-05	0.217	GCCGCCCACCCC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	68	79	-	12.9429	2.01e-05	0.217	GCCGCCCACCCC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	36	47	+	12.9429	2.01e-05	0.217	GCCGCCCACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	87	98	+	12.9429	2.01e-05	0.217	GCCGCCCACCCC
RREB1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	6	25	-	7.55963	2.01e-05	0.0462	CTCCACCCCTCCCCCCTCCC
RREB1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	90	109	+	7.55963	2.01e-05	0.0462	CTCCACCCCTCCCCCCTCCC
HLF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	-	13.0678	2.01e-05	1	AATTACGTAATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	+	13.7273	2.01e-05	0.144	TATGACTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	+	13.7273	2.01e-05	0.144	TATGACTCAGC
RELA	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	27	36	-	13.3061	2.01e-05	0.18	GGGAGATTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	91	100	-	13.3061	2.01e-05	0.18	GGGAGATTCC
SP3	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	13	23	-	12.7642	2.01e-05	0.0127	CCCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	35	45	-	12.7642	2.01e-05	0.0127	CCCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	35	45	-	12.7642	2.01e-05	0.0127	CCCCCGCCCAG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	46	56	+	13.2295	2.01e-05	0.0406	CCGGAAGTTAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	59	69	-	13.2295	2.01e-05	0.0406	CCGGAAGTTAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	59	69	-	13.2295	2.01e-05	0.0406	CCGGAAGTTAA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	81	101	-	8.33673	2.01e-05	0.205	CTCAGCGCCAGAGCCAGGACT
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	58	75	+	9.08257	2.01e-05	0.523	GGAAAGTCAAAGTTTGAT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	58	75	+	9.08257	2.01e-05	0.523	GGAAAGTCAAAGTTTGAT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	34	51	-	9.08257	2.01e-05	0.523	GGAAAGTCAAAGTTTGAT
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	34	51	-	9.08257	2.01e-05	0.523	GGAAAGTCAAAGTTTGAT
Pou2f3	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	32	47	-	12.9878	2.01e-05	0.71	TGAAATGCAAATTCAG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	23	32	+	11.9898	2.01e-05	0.148	GATCACGTGT
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	23	32	+	11.9898	2.01e-05	0.148	GATCACGTGT
ELF3	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	66	78	-	11.4483	2.01e-05	0.122	AACCCGGAAGGCA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	75	-	13.7347	2.01e-05	0.138	TGATGAGTCAC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	19	33	+	10.6842	2.01e-05	0.167	GGCGTGAGTCTGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	19	33	+	10.6842	2.01e-05	0.167	GGCGTGAGTCTGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	19	33	+	10.6842	2.01e-05	0.167	GGCGTGAGTCTGCGC
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	19	33	+	10.6842	2.01e-05	0.167	GGCGTGAGTCTGCGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	3	16	-	11.2131	2.01e-05	0.176	CACCCCCAACGAGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	3	16	-	11.2131	2.01e-05	0.176	CACCCCCAACGAGC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	83	101	+	11.377	2.01e-05	0.083	AACCCAGCGGAGGGCGGGA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	10.3952	2.01e-05	0.043	GCCACGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	10.3952	2.01e-05	0.043	GGCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	10.3952	2.01e-05	0.043	GGCACGTGGC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	7	21	+	2.54545	2.01e-05	0.484	GCCAAAAGTGAAAGT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	-	12.918	2.01e-05	0.064	ACCCCCTGAGGCT
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	13.0909	2.01e-05	0.096	TCCGGAAATG
ERG	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	13.0909	2.01e-05	0.096	TCCGGAAATG
ERG	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	13.0909	2.01e-05	0.096	TCCGGAAATG
RFX3	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	+	11.8182	2.01e-05	0.125	CGTTGCCATAGTTCCA
RFX3	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	-	11.8182	2.01e-05	0.125	CGTTGCCATAGTTCCA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	54	67	+	13.3103	2.01e-05	0.188	CTGCTGGGAACTGG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	54	67	+	13.3103	2.01e-05	0.188	CTGCTGGGAACTGG
INSM1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	5	16	-	12.8776	2.01e-05	0.146	GGCCTGGGGTTG
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	4	14	+	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	4	14	+	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	4	14	+	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	4	14	+	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	4	14	+	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	1	11	-	13.1212	2.01e-05	0.0428	AGCCACGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	30	40	-	13.1212	2.01e-05	0.0428	GGCTACGCCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	64	74	-	13.1212	2.01e-05	0.0428	AGCCACGCCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	26	42	+	8.01818	2.01e-05	0.0166	CTGGCCCCTCCTCTTCC
CENPB	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	98	112	-	12.6538	2.02e-05	0.793	CCCGCGAAGAACGCA
Hoxa9	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	27	37	-	13.0395	2.02e-05	1	CCCATAAATTA
SP2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	18	+	12.7759	2.02e-05	0.00677	TCCCCGCCCCGCGTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	35	+	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	35	+	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	35	+	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	35	+	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	70	84	+	12.7759	2.02e-05	0.00677	TCCCCGCCCCAGCTT
SP2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	31	45	-	12.7759	2.02e-05	0.00677	TCCCCGCCCCAGCTT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	51	65	-	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	51	65	-	12.7759	2.02e-05	0.00677	ACCCCGCCCAGCGCC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	97	111	-	12.7759	2.02e-05	0.00677	TCCCCGCCCCGCGTT
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	80	94	-	8.69663	2.02e-05	0.175	GGCCGCCTGGGTTTC
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	-	4.5	2.02e-05	0.764	TCACGGCTGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	-	4.5	2.02e-05	0.764	TCACGGCTGTCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	+	12.7759	2.02e-05	0.0551	AGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	-	12.7759	2.02e-05	0.0551	AGCCTGGAGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	+	12.7759	2.02e-05	0.0551	AGCCGTGGGGGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	26	-	9.82979	2.02e-05	0.0959	CCCGCCCCGCGGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	97	-	9.82979	2.02e-05	0.0959	CCCGCCCCGCGGCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	18	31	+	9.82979	2.02e-05	0.0959	CCCGCCCCGCGGCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	80	93	+	9.82979	2.02e-05	0.0959	AGACCCCTGCGGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	89	102	+	9.82979	2.02e-05	0.0959	CCCGCCCCGCGGCG
SP8	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	7	18	-	12.7763	2.02e-05	0.0185	CCCCCACCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	37	48	-	12.7763	2.02e-05	0.0185	CCCCCACCCCCT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	44	58	-	12.2273	2.02e-05	0.233	AAAGTTTTGCTTCCC
TCF4	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	19	-	13.5102	2.02e-05	0.391	CACACCTGTT
TCF4	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	105	+	13.5102	2.02e-05	0.391	CACACCTGTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	13	33	+	11.7742	2.02e-05	0.139	TTTTCTTTTCTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	13	33	+	11.7742	2.02e-05	0.139	TTTTCTTTTCTTTTTTTTTTT
IRF1	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	30	50	+	11.7742	2.02e-05	0.139	GCTTGCATTCGCTTTCTCCCT
REL	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	29	38	+	12.8384	2.02e-05	0.23	TGGGAATTCC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	26	37	+	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	26	37	+	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
ELF4	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	57	68	+	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	58	-	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	58	-	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
ELF4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	89	-	11.9672	2.02e-05	0.073	TCCCCGGAAGCA
NFIL3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	66	76	+	13.8182	2.02e-05	1	TTACGTAATTT
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	66	76	+	13.8182	2.02e-05	1	TTACGTAATTT
ZNF263	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	5	25	-	11.9184	2.02e-05	0.00966	GGGGCGGGGGCGAGGGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	37	57	-	11.9184	2.02e-05	0.00966	AGTGGAGAAGCGAGAAGTGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	37	57	-	11.9184	2.02e-05	0.00966	AGTGGAGAAGCGAGAAGTGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	65	85	-	11.9184	2.02e-05	0.00966	GGAGAGGGCGAGGGAGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	76	96	-	11.9184	2.02e-05	0.00966	GGGGCGGGGGCGAGGGGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	80	100	-	11.9184	2.02e-05	0.00966	AGGGAAGGGAAGGAAGTAAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	6	26	+	11.9184	2.02e-05	0.00966	GGGGGGAGAGGCGGGGGAAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	19	39	+	11.9184	2.02e-05	0.00966	GGGGCGGGGGCGAGGGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	27	47	+	11.9184	2.02e-05	0.00966	GGGGGAAACTGGGGAAGTGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	90	110	+	11.9184	2.02e-05	0.00966	GGGGCGGGGGCGAGGGGAGGA
HOXB13	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	11	20	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	49	58	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	50	59	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	50	59	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	50	59	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	50	59	+	13.0909	2.02e-05	1	CCTATAAAAA
HOXB13	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	88	97	-	13.0909	2.02e-05	1	CCTATAAAAA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	8	27	+	7.54128	2.02e-05	0.0462	CACACACACACACACACACT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	8	27	+	7.54128	2.02e-05	0.0462	CACACACACACACACACACT
Hes1	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	1	10	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	13	22	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	17	26	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	17	26	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	21	30	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	21	30	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	21	30	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	21	30	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	12	21	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	25	34	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	25	34	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	25	34	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	25	34	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	26	35	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	27	36	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	31	40	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	31	40	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	31	40	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	31	40	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	23	32	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	26	35	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	27	36	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	30	39	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	31	40	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	32	41	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	32	41	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	32	41	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	32	41	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	32	41	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	33	42	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	42	51	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	33	42	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	42	51	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	33	42	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	33	42	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	43	52	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	43	52	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	43	52	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	43	52	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	46	55	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	48	57	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	41	50	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	53	62	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	53	62	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	65	74	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	58	67	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	60	69	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	71	80	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	63	72	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	73	82	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	64	73	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	74	83	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	66	75	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	76	85	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	69	78	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	69	78	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	79	88	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	75	84	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	81	90	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	94	103	+	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	85	94	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	93	102	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	93	102	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	93	102	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	93	102	-	10.7552	2.02e-05	0.0721	CGCACGCGCA
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	19	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	19	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	28	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	37	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	39	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	45	55	+	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	70	-	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	76	86	+	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	78	88	+	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	87	97	+	13.3455	2.02e-05	0.0419	TCACTTCCTGT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.9655	2.02e-05	0.0709	GCCGGAAGCA
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.9655	2.02e-05	0.0709	GCCGGAAGCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	11	24	+	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	20	33	-	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	25	38	-	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	25	38	-	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	25	38	-	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	25	38	-	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	45	58	+	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	45	58	+	11.7586	2.02e-05	0.0221	CGCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	53	66	-	11.7586	2.02e-05	0.0221	CGCCGCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	53	66	-	11.7586	2.02e-05	0.0221	CGCCGCGCCCCCGC
KLF14	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	87	100	+	11.7586	2.02e-05	0.0221	CGCCGCGCCCCCGC
NR2F1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	7	19	-	13.3265	2.02e-05	0.367	GAGGGGTCAGAGG
NR2F1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	96	108	+	13.3265	2.02e-05	0.367	GAGGGGTCAGAGG
SP1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	51	61	+	13.2115	2.02e-05	0.00792	ATCCCGCCCCT
SP1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	54	64	-	13.2115	2.02e-05	0.00792	ATCCCGCCCCT
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	60	73	-	11.1967	2.02e-05	0.176	TGCCCCCCACTGAC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	90	103	-	13.1515	2.03e-05	0.0324	GCATCTCAGGCCTG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	57	67	-	12.7759	2.03e-05	0.215	TTCTGTGGGTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	86	96	+	12.7759	2.03e-05	0.215	TTCTGTGGGTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	86	96	+	12.7759	2.03e-05	0.215	TTCTGTGGGTT
Srebf1(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	12.6724	2.03e-05	0.188	GTCACGCGAC
Srebf1(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	12.6724	2.03e-05	0.188	GTCACGCGAC
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	3	15	-	12.71	2.03e-05	1	ATGATGCAAATGT
POU3F3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	3	15	-	12.71	2.03e-05	1	ATGATGCAAATGT
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	97	109	-	12.71	2.03e-05	1	ATGATGCAAATGT
POU3F3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	97	109	-	12.71	2.03e-05	1	ATGATGCAAATGT
POU3F3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	18	30	+	12.71	2.03e-05	1	ATGATGCAAATGT
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	18	30	+	12.71	2.03e-05	1	ATGATGCAAATGT
Klf4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	19	28	-	12.7245	2.03e-05	0.0127	GGGGAGTGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	36	45	+	12.7245	2.03e-05	0.0127	GGGGAGTGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	51	60	+	12.7245	2.03e-05	0.0127	GGGGAGTGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	70	79	-	12.7245	2.03e-05	0.0127	GGGGAGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	87	96	+	12.7245	2.03e-05	0.0127	GGGGAGTGGC
YY1	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	59	70	-	13.0192	2.03e-05	0.124	CAACATGGCCCA
YY1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	86	97	-	13.0192	2.03e-05	0.124	CATGATGGCGGC
YY1	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	41	52	+	13.0192	2.03e-05	0.124	CAACATGGCCCA
YY1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	97	108	+	13.0192	2.03e-05	0.124	GAACATGGCGGT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	19	29	-	13.2131	2.03e-05	0.0406	CCGGAAGAGGT
BATF3	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	17	30	+	5.5303	2.03e-05	0.115	CGATGACCTCATCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	13.2545	2.03e-05	0.0969	CGCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	13.2545	2.03e-05	0.0969	CGCACGTGGC
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	13	24	+	12.76	2.03e-05	1	ATTATGCAAAGG
EGR3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	28	42	-	9.98276	2.03e-05	0.0302	CCCCGCCCCCTCCTC
EGR3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	37	51	-	9.98276	2.03e-05	0.0302	CCCCGCCCCCTCCTC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	64	78	+	9.98276	2.03e-05	0.0302	CCCCGCCCCCTCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	64	78	+	9.98276	2.03e-05	0.0302	CCCCGCCCCCTCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	53	67	-	9.98276	2.03e-05	0.0302	CCCCGCCCCCCCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	53	67	-	9.98276	2.03e-05	0.0302	CCCCGCCCCCCCGGC
TFAP2C	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	+	12.8367	2.03e-05	0.0857	GGCCCCGGGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	-	12.8367	2.03e-05	0.0857	GGCCCCGGGGCG
TFAP2C	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	-	12.8367	2.03e-05	0.0857	GGCCCCGGGGCG
SRF	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	91	106	-	8.90164	2.03e-05	0.48	TTTCCAAATAAGGTTG
SRF	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	5	20	+	8.90164	2.03e-05	0.48	TTTCCAAATAAGGTTG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.1.0	8	27	+	7.53211	2.03e-05	0.0462	CACGCACACACACACACACT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.0.0	8	27	+	7.53211	2.03e-05	0.0462	CACGCACACACACACACACT
NHLH1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	71	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	74	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	91	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	91	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	92	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	85	94	-	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	85	94	-	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	85	94	-	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	85	94	-	13.1207	2.03e-05	0.102	AGCAGCTGCA
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	107	+	13.1207	2.03e-05	0.102	AGCAGCTGCA
Ar	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	62	78	+	10.0862	2.03e-05	0.882	GGGCCCAGGGTGTCCCC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	4	18	+	11.0857	2.03e-05	0.0984	CGCTTCCCGCGGCGT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	25	39	-	11.0857	2.03e-05	0.0984	GCCGCCCCGCGGAGG
Myc	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	19	28	+	13.6364	2.03e-05	0.274	ACATGTGCTT
Myc	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	87	96	-	13.6364	2.03e-05	0.274	ACATGTGCTT
CREB3	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	47	60	-	12.3	2.03e-05	0.206	TGGCCACGTGACCC
CREB3	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	33	46	+	12.3	2.03e-05	0.206	TGGCCACGTGACCC
TP53	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	27	44	-	9.7551	2.03e-05	0.863	AGCATGTAAGGGCCAGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	63	77	-	12.6515	2.03e-05	0.0728	GCCCCGCGAGGCCGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	63	77	-	12.6515	2.03e-05	0.0728	GCCCCGCGAGGCCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	63	77	-	12.6515	2.03e-05	0.0728	GCCCCGCGAGGCCGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	63	77	-	12.6515	2.03e-05	0.0728	GCCCCGCGAGGCCGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	63	77	-	12.6515	2.03e-05	0.0728	GCCCCGCGAGGCCGG
EGR1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	36	49	-	12.6346	2.03e-05	0.0119	GCTCCTCCCCCTGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	52	65	+	12.6346	2.03e-05	0.0119	CTCCCACCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	69	82	+	12.6346	2.03e-05	0.0119	CGCCCTCCGCCGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	69	82	+	12.6346	2.03e-05	0.0119	CGCCCTCCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	69	82	+	12.6346	2.03e-05	0.0119	CGCCCTCCGCCGCT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	67	80	-	12.6346	2.03e-05	0.0119	CCCCATCCCCCTCA
FEV	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	13.0577	2.03e-05	0.0872	TCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	13.0577	2.03e-05	0.0872	TCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	13.0577	2.03e-05	0.0872	TCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	13.0638	2.03e-05	0.0896	TCCGGAAATG
FLI1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	13.0638	2.03e-05	0.0896	TCCGGAAATG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	13.0638	2.03e-05	0.0896	TCCGGAAATG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	6	16	-	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	6	16	-	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	6	16	-	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	6	16	-	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	28	38	+	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	28	38	+	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	28	38	+	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	28	38	+	12.1207	2.03e-05	0.0649	ACGCGCACGCG
EGR2	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	77	87	-	12.1207	2.03e-05	0.0649	ACGCGCACGCG
Sox17	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	37	45	-	12.3034	2.03e-05	1	TCCATTGTC
Sox17	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	44	52	-	12.3034	2.03e-05	1	CACATTGTC
Sox17	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	70	78	+	12.3034	2.03e-05	1	TCCATTGTC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	59	+	13.1429	2.03e-05	0.107	CTCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	59	+	13.1429	2.03e-05	0.107	CTCACGTGGCC
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	58	66	-	12.814	2.03e-05	0.433	GACAGGTGT
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	58	66	-	12.814	2.03e-05	0.433	GACAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	58	66	-	12.814	2.03e-05	0.433	GACAGGTGT
SNAI2	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	20	+	12.814	2.03e-05	0.433	GACAGGTGT
EHF	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	9	20	+	12.6066	2.03e-05	0.105	TTACCGGAAGTG
ELF1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	58	-	12.1273	2.03e-05	0.0853	GAACCGGAAGCC
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	50	63	-	12.7742	2.03e-05	0.297	CTTCCTAGAAGCAC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	50	63	-	12.7742	2.03e-05	0.297	CTTCCTAGAAGCAC
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	50	63	-	12.7742	2.03e-05	0.297	CTTCCTAGAAGCAC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	50	63	-	12.7742	2.03e-05	0.297	CTTCCTAGAAGCAC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	-	12.9455	2.03e-05	0.0548	TGCCTGCGGGCT
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	14	28	+	12.6182	2.03e-05	0.266	ACAGAGGGAAAGGGA
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	89	102	-	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	11	24	+	12.0328	2.03e-05	0.365	ACTCCCTGAGGACT
TP63	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	96	113	+	3.56897	2.03e-05	0.559	CACATGACGGAGCATGAC
TP63	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	96	113	+	3.56897	2.03e-05	0.559	CACATGACGGAGCATGAC
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	29	40	-	12.9286	2.03e-05	0.217	CCCGACCACAGG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	71	82	+	12.9286	2.03e-05	0.217	CCCGACCACAGG
Vdr	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	49	64	-	8.01639	2.03e-05	0.748	GGGTTCTCCGGGTGTA
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	19	31	-	13.6327	2.03e-05	0.12	CCCACCTGTCGCG
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	19	31	-	13.6327	2.03e-05	0.12	CCCACCTGTCGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	+	12.8852	2.03e-05	0.0554	GGCCTTCGGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	+	12.8852	2.03e-05	0.0554	GGCCTTCGGGGCT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	16	29	+	13.4231	2.03e-05	0.163	AACTTATGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	16	29	+	13.4231	2.03e-05	0.163	AACTTATGACTCAT
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	54	68	-	12	2.03e-05	0.095	CGGGGGGGGGGGGCG
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	-	13.5745	2.03e-05	0.169	GCTGACTCATA
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	-	13.5745	2.03e-05	0.169	GCTGACTCATA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	-	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	-	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	-	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	-	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	+	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	+	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	+	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	+	13.5745	2.03e-05	0.169	GATGAGTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	-	13.5745	2.03e-05	0.169	GATGAGTCACC
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	11	25	-	12.5856	2.03e-05	0.142	CGGGAGGAGGGGTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	46	60	+	12.5856	2.03e-05	0.142	GCGGGGGAGAGGCCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	46	60	+	12.5856	2.03e-05	0.142	GCGGGGGAGAGGCCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	46	60	+	12.5856	2.03e-05	0.142	GCGGGGGAGAGGCCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	46	60	+	12.5856	2.03e-05	0.142	GCGGGGGAGAGGCCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	46	60	+	12.5856	2.03e-05	0.142	GCGGGGGAGAGGCCT
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	90	104	+	12.5856	2.03e-05	0.142	CGGGAGGAGGGGTCA
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	+	13.1923	2.03e-05	0.278	CACACGTGCT
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	+	13.1923	2.03e-05	0.278	CACACGTGCT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	11	28	-	-8.90789	2.04e-05	0.0319	GGGAGAAAGGGAGCTGTC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	80	97	+	-8.90789	2.04e-05	0.0319	GGGAGAAAGGGAGCTGTC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	30	44	-	12.2424	2.04e-05	0.232	AAGGGTGACTCAGAA
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	33	47	-	13.0962	2.04e-05	0.0969	AAACTCACCAATAAG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	33	47	-	13.0962	2.04e-05	0.0969	AAACTCACCAATAAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	33	47	-	13.0962	2.04e-05	0.0969	AAACTCACCAATAAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	47	61	-	11.3443	2.04e-05	0.0371	GGCCCCGCCCCTGGG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	47	61	-	11.3443	2.04e-05	0.0371	GGCCCCGCCCCTGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	9	23	+	10.9508	2.04e-05	0.494	CAGAAACAGGTGGGG
SP2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	34	48	+	12.7586	2.04e-05	0.00683	CGCCCTCCTCCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	60	74	+	12.7586	2.04e-05	0.00683	TTCCCACCCCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	60	74	+	12.7586	2.04e-05	0.00683	TTCCCACCCCCAGGC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	67	81	-	12.7586	2.04e-05	0.00683	CGCCCTCCTCCTCCA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	+	12.8265	2.04e-05	0.0857	CGCCGGAGGGCA
ETV6	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
ETV6	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	13.1154	2.04e-05	0.0727	ACAGGAAGTG
Nr2f6(var.2)	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	19	33	+	-0.0428571	2.04e-05	0.656	GAGGTCACACGGACA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	82	96	-	-0.0428571	2.04e-05	0.656	GAGGTCACACGGACA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	82	96	-	-0.0428571	2.04e-05	0.656	GAGGTCACACGGACA
SP1	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	26	36	-	13.1923	2.04e-05	0.00795	GCCCCACCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	62	72	+	13.1923	2.04e-05	0.00795	GCCCCACCCTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	62	72	+	13.1923	2.04e-05	0.00795	GCCCCACCCTT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	60	70	-	13.1923	2.04e-05	0.00795	GCCCCACCCTT
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	13	27	+	12.5273	2.04e-05	0.0974	TCCTCCCCGCTGCTC
ZIC4	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	24	38	-	12.5273	2.04e-05	0.0974	CGCCCCCTGGCGGGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	42	56	-	12.5273	2.04e-05	0.0974	TCCTCCCCGCTGCTC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	77	91	+	12.5273	2.04e-05	0.0974	CGCCCCCTGGCGGGC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	11	20	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	11	20	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	12	21	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	23	32	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	23	32	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	17	26	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	17	26	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	29	38	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	22	31	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	43	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	26	35	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	32	41	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	42	51	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	42	51	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	34	43	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	37	46	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	46	55	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	46	55	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	46	55	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	46	55	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	47	56	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	41	50	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	41	50	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	41	50	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	55	64	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	55	64	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	65	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	50	59	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	52	61	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	52	61	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	52	61	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	55	64	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	55	64	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	55	64	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	55	64	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	65	74	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	65	74	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	58	67	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	58	67	-	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	67	76	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	59	68	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	78	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	78	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	78	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	78	+	13.4898	2.04e-05	0.0105	CCCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	62	71	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	62	71	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	62	71	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	62	71	-	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	80	89	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	80	89	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	94	103	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	94	103	+	13.4898	2.04e-05	0.0105	GCTCCACCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	14	27	+	11.7414	2.04e-05	0.0221	GGCCACACCCTCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	14	27	+	11.7414	2.04e-05	0.0221	GGCCACACCCTCTT
KLF14	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	34	47	-	11.7414	2.04e-05	0.0221	CACCACTCCCACTT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	14	28	-	11.0714	2.04e-05	0.0984	TCCTCCCTGCAGCGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	14	28	-	11.0714	2.04e-05	0.0984	TCCTCCCTGCAGCGT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	31	45	-	11.0714	2.04e-05	0.0984	CCCTCCCCGCAGAGC
EGR3	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	13	27	+	9.96552	2.04e-05	0.0302	GCCCGCCCGCGCCTA
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	78	92	-	9.96552	2.04e-05	0.0302	CGCCGCCTCCGCCAA
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	16	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	16	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	16	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	16	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	16	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	17	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	17	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	18	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	20	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	20	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	22	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	25	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	27	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	27	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	31	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	34	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	49	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	39	49	+	12.7931	2.04e-05	0.0123	GTCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	62	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	62	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	62	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	62	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	62	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	62	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	71	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	76	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	85	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	97	+	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	103	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	110	+	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	5	15	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	5	15	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	5	15	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	5	15	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	7	17	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	10	20	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	12	22	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	18	28	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	22	32	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	39	49	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	43	53	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	43	53	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	43	53	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	43	53	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	44	54	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	47	57	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	47	57	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	47	57	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	47	57	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	53	63	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	53	63	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	55	65	-	12.7931	2.04e-05	0.0123	GTCACGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	66	76	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	81	91	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	84	94	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	93	103	-	12.7931	2.04e-05	0.0123	TCCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	99	109	-	12.7931	2.04e-05	0.0123	GCTCCGCCCCC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	94	104	+	13.569	2.04e-05	0.0448	GAGCGGGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	94	104	+	13.569	2.04e-05	0.0448	GAGCGGGAAGA
Sox3	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	8	17	-	13.3621	2.04e-05	0.659	CTTTTGTTTC
Sox3	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	96	105	+	13.3621	2.04e-05	0.659	CTTTTGTTTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	26	40	+	12.7308	2.04e-05	0.426	GGGGCAGCGGGGCCC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	26	40	+	12.7308	2.04e-05	0.426	GGGGCAGCGGGGCCC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	12.9155	2.04e-05	0.0839	ACCGGAACTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	12.9155	2.04e-05	0.0839	ACCGGAACTG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	54	74	-	11.898	2.04e-05	0.00976	GGAAGGGGGAGGGAGGGGGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	41	61	+	11.898	2.04e-05	0.00976	GGAAGGGGGAGGGAGGGGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	75	95	+	11.898	2.04e-05	0.00976	GAAGCAGAGTGAGAGAGGTGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	25	35	+	13.1967	2.04e-05	0.0406	CCGGAAGCACA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	25	35	+	13.1967	2.04e-05	0.0406	CCGGAAGCACA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	25	35	+	13.1967	2.04e-05	0.0406	CCGGAAGCACA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	25	35	+	13.1967	2.04e-05	0.0406	CCGGAAGCACA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	25	35	+	13.1967	2.04e-05	0.0406	CCGGAAGCACA
GSC2	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	32	41	-	11.5763	2.04e-05	1	CATAATCCCC
CTCF	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	11	29	+	11.3443	2.04e-05	0.083	AGGCCAGCTGGTGGCTGCC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	73	91	-	11.3443	2.04e-05	0.083	GGGCCAGGGGATGGCGGGC
CTCF	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	86	104	-	11.3443	2.04e-05	0.083	AGGCCAGCTGGTGGCTGCC
Zfx	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	8	21	+	13.1364	2.05e-05	0.0325	CTGTGCCCGGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	27	40	+	13.1364	2.05e-05	0.0325	CTGTGCCCGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	75	88	-	13.1364	2.05e-05	0.0325	CTGTGCCCGGCCTC
CREB3	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	63	76	-	12.2857	2.05e-05	0.206	ATGCGACGTCAACG
CREB3	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	39	52	+	12.2857	2.05e-05	0.206	ATGCGACGTCAACG
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	48	60	+	12.9683	2.05e-05	1	GGTTATAAATCCC
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	48	60	-	12.9683	2.05e-05	1	GGTTATAAATCCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	4	18	+	12.4028	2.05e-05	0.381	CCATAAAAGGGCTGG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	4	18	+	12.4028	2.05e-05	0.381	CCATAAAAGGGCTGG
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	24	37	-	13.3636	2.05e-05	0.951	CGTCTCTTATCTCC
GATA2	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	78	91	+	13.3636	2.05e-05	0.951	CGTCTCTTATCTCC
SPI1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	13	26	+	7.21818	2.05e-05	0.127	GAAAAGGGGAGGTG
SPI1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	89	102	-	7.21818	2.05e-05	0.127	GAAAAGGGGAGGTG
THAP1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	36	44	-	10.8553	2.05e-05	0.192	CTGCCCTTA
ZBTB7A	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	68	79	-	12.9143	2.05e-05	0.217	GACGCCCACCCC
ZBTB7A	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	36	47	+	12.9143	2.05e-05	0.217	GACGCCCACCCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	66	80	+	12.5766	2.05e-05	0.142	GTGGGGGAGAGCTCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	66	80	+	12.5766	2.05e-05	0.142	GTGGGGGAGAGCTCA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	2	19	-	-8.94737	2.05e-05	0.0319	GGGAGGAAGTCGGGAAAA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	50	67	+	-8.94737	2.05e-05	0.0319	GGGAGGAAGTCGGGAAAA
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	58	71	+	12.431	2.05e-05	0.132	ACTTCCGTGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	58	71	+	12.431	2.05e-05	0.132	ACTTCCGTGGCAAC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	56	66	+	13.3061	2.05e-05	0.672	GTTGCATAACT
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	56	66	+	13.3061	2.05e-05	0.672	GTTGCATAACT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	56	66	+	13.3061	2.05e-05	0.672	GTTGCATAACT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	56	66	+	13.3061	2.05e-05	0.672	GTTGCATAACT
CEBPA	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	49	59	-	13.3061	2.05e-05	0.672	GTTGCATAACT
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	92	105	+	8.93878	2.05e-05	0.365	TGGCAGGATGACAG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	+	12.8689	2.05e-05	0.0554	GGCCCGAAGGGGA
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	-	12.8689	2.05e-05	0.0554	GGCCCGAAGGGGA
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	-	13.7447	2.05e-05	0.169	TGTGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	-	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	-	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	+	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	+	13.7447	2.05e-05	0.169	TGTGAGTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	-	13.7447	2.05e-05	0.169	TGTGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	-	13.7447	2.05e-05	0.169	TGTGAGTCACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	-	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	-	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	-	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	+	13.7447	2.05e-05	0.169	GCTGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	+	13.7447	2.05e-05	0.169	GCTGAGTCACC
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	78	91	-	7.77273	2.05e-05	0.379	CACCCCCCAGATGG
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	78	91	-	7.77273	2.05e-05	0.379	CACCCCCCAGATGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	11	25	-	11.0571	2.05e-05	0.0984	ACCCCCCCGCGGCCT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	23	37	-	11.0571	2.05e-05	0.0984	ACCCCCCCACCGAGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	23	37	-	11.0571	2.05e-05	0.0984	ACCCCCCCACCGAGA
Klf12	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	7	21	+	11.3279	2.05e-05	0.0371	AGCCACGCCTATACA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	70	84	+	11.3279	2.05e-05	0.0371	GGCCCCGCCCCCGGC
Klf12	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	94	108	-	11.3279	2.05e-05	0.0371	AGCCACGCCTATACA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	69	79	-	12.7759	2.05e-05	0.0123	GACCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	69	79	-	12.7759	2.05e-05	0.0123	GACCCGCCTCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	30	42	+	11.5909	2.05e-05	0.225	GGGGAAAGTCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	28	40	-	11.5909	2.05e-05	0.225	GGGGAAAGTCCCC
LIN54	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	7	15	-	12	2.05e-05	1	ATTTGAATA
LIN54	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	7	15	-	12	2.05e-05	1	ATTTGAATA
LIN54	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	7	15	-	12	2.05e-05	1	ATTTGAATA
LIN54	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	7	15	-	12	2.05e-05	1	ATTTGAATA
LIN54	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	7	15	-	12	2.05e-05	1	ATTTGAATA
HNF1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	15	27	+	12.2879	2.05e-05	0.517	GTTAACCATTTAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	15	27	+	12.2879	2.05e-05	0.517	GTTAACCATTTAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	5	18	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	5	18	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	5	18	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	5	18	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	5	18	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	3	16	-	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	3	16	-	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	3	16	-	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	3	16	-	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	99	112	+	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
KLF14	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	97	110	-	11.7241	2.06e-05	0.0221	GGCTCCGCCCCCGA
Gmeb1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	19	35	+	11.6053	2.06e-05	0.537	CAGCTGACGTCACAGGC
Gmeb1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	19	35	+	11.6053	2.06e-05	0.537	CAGCTGACGTCACAGGC
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	12	22	-	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	46	56	+	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	46	56	+	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	46	56	+	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	46	56	+	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.0.0	69	79	-	12.5818	2.06e-05	0.0108	GAGCCGGCGCC
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	34	-	12.8689	2.06e-05	0.064	TGCCTGGAGGGGA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	93	+	12.8689	2.06e-05	0.064	TGCCTGGAGGGGA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	-	12.7414	2.06e-05	0.0554	ACCCCCTAGGGCC
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	45	57	-	13.3061	2.06e-05	0.367	TGAAGGTCAAAGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	59	73	+	12.7414	2.06e-05	0.00689	CGCCCTCCCCTCTGC
SP2	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	24	38	-	12.7414	2.06e-05	0.00689	CTCCTGCCCCCTCCT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	46	63	+	-8.97368	2.06e-05	0.0319	GGCGGGAGGGCGGGAGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	52	69	-	-8.97368	2.06e-05	0.0319	GGCGGGAGGGCGGGAGGG
EGR4	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	11	26	+	12.3818	2.06e-05	0.0374	CCCCGCCCCCGGAGTG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	7	18	+	12.8163	2.06e-05	0.146	TGGAAGGGGTTG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	7	18	+	12.8163	2.06e-05	0.146	TGGAAGGGGTTG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	7	18	+	12.8163	2.06e-05	0.146	TGGAAGGGGTTG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	63	74	-	12.8163	2.06e-05	0.146	TGGAAGGGGTTG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	63	74	-	12.8163	2.06e-05	0.146	TGGAAGGGGTTG
SCRT1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	9	23	-	10.918	2.06e-05	0.494	GTGCAACAGGGGCCC
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	9	23	-	10.918	2.06e-05	0.494	GTGCAACAGGGGCCC
SCRT1	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	92	106	+	10.918	2.06e-05	0.494	GTGCAACAGGGGCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	32	41	+	13.2245	2.06e-05	0.18	GGGGGTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	32	41	+	13.2245	2.06e-05	0.18	GGGGGTTCCC
RELA	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	57	66	+	13.2245	2.06e-05	0.18	GGGGGTTCCC
SP3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	16	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	26	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	26	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	43	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	43	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	59	+	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	59	+	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	80	+	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	83	+	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	85	+	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	3	13	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	13	23	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	13	23	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	13	23	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	24	34	-	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	24	34	-	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	24	34	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	26	36	-	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	30	40	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	32	42	-	12.7561	2.06e-05	0.0127	TCCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	36	46	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	36	46	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	36	46	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	36	46	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	36	46	-	12.7561	2.06e-05	0.0127	CCCCCACCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	43	53	-	12.7561	2.06e-05	0.0127	TCCCCACCCCC
ELF1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	52	63	+	12.0909	2.06e-05	0.0857	CCCCCGGAAGCG
ELF1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	63	-	12.0909	2.06e-05	0.0857	CCCCCGGAAGCG
CTCF	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	12	30	-	11.3279	2.06e-05	0.083	ACCCCAGCAGGTGTCAGGG
CTCF	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	85	103	+	11.3279	2.06e-05	0.083	ACCCCAGCAGGTGTCAGGG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	-	11.102	2.06e-05	0.188	CGTGAGTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	-	11.102	2.06e-05	0.188	CGTGAGTCACC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	+	11.102	2.06e-05	0.188	CGTGAGTCACC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	-	11.102	2.06e-05	0.188	AATGACTCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	84	95	+	12.7632	2.06e-05	0.0188	ACCCCGCCCGCT
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	13.7576	2.06e-05	1	GACATATGCT
Nr5a2	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	86	100	-	12.6379	2.06e-05	0.334	CCACCCAAGGCCAGG
SPI1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	20	33	+	7.2	2.06e-05	0.127	TGAAGGAGGAAGTG
SPI1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	95	-	7.2	2.06e-05	0.127	TGAAGGAGGAAGTG
Klf1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	76	86	+	13.1061	2.06e-05	0.0428	CGCCACTCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	55	65	-	13.1061	2.06e-05	0.0428	CGCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	100	110	-	13.1061	2.06e-05	0.0428	TACCACACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	100	110	-	13.1061	2.06e-05	0.0428	TACCACACCCC
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	19	32	+	11.4394	2.06e-05	0.253	AAGCCACGTCCCCC
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	19	32	+	11.4394	2.06e-05	0.253	AAGCCACGTCCCCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	19	32	+	11.4394	2.06e-05	0.253	AAGCCACGTCCCCC
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	19	32	+	11.4394	2.06e-05	0.253	AAGCCACGTCCCCC
JUN(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	16	29	-	13.4038	2.06e-05	0.163	TTAGAGTGACTCAG
JUN(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	16	29	-	13.4038	2.06e-05	0.163	TTAGAGTGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	31	44	+	13.4038	2.06e-05	0.163	TTTAAATGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	71	84	-	13.4038	2.06e-05	0.163	TTTAAATGACTCAT
JUN(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	87	100	+	13.4038	2.06e-05	0.163	TTAGAGTGACTCAG
JUN	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	1	13	+	13.1429	2.06e-05	0.301	ATTATGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	64	76	+	13.1429	2.06e-05	0.301	ATTATGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	39	51	-	13.1429	2.06e-05	0.301	ATTATGACGTCAC
JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	39	51	-	13.1429	2.06e-05	0.301	ATTATGACGTCAC
JUN	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	102	114	-	13.1429	2.06e-05	0.301	ATTATGACGTCAC
Ddit3::Cebpa	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	91	102	+	12.8778	2.06e-05	1	AGGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	13	24	-	12.8778	2.06e-05	1	AGGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	13	24	-	12.8778	2.06e-05	1	AGGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	13	24	-	12.8778	2.06e-05	1	AGGTGCACTCCC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	30	41	+	12.7258	2.06e-05	0.281	ACGCCCACCGCT
KLF16	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	2	12	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	35	45	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	45	55	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	45	55	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	46	56	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	75	85	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	80	90	+	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	6	16	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	7	17	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	15	25	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	21	31	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	25	35	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	27	37	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	30	40	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	32	42	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	33	43	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	49	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	62	72	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	103	113	-	12.7586	2.06e-05	0.0123	CCCACCCCCAC
TGIF2	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	-	10.844	2.06e-05	0.668	TGACAGCAGCCA
Mecom	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	84	97	-	11.7191	2.07e-05	1	GGGATAAGATCATC
ELF4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	52	63	+	11.9344	2.07e-05	0.074	CCCCCGGAAGCG
ELF4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	63	-	11.9344	2.07e-05	0.074	CCCCCGGAAGCG
Hes2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	82	-	12.0476	2.07e-05	0.409	TGCAGGCACGTGG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	40	+	13.7143	2.07e-05	0.142	AGCAGCTGGGC
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	70	79	+	11.0081	2.07e-05	0.956	ACTTTCCATT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	3	23	+	11.8776	2.07e-05	0.00984	GAGGGGAGGGGAGGATGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	20	40	+	11.8776	2.07e-05	0.00984	GGGGATGGTGGTGGAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	20	40	+	11.8776	2.07e-05	0.00984	GGGGATGGTGGTGGAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	20	40	+	11.8776	2.07e-05	0.00984	GGGGATGGTGGTGGAGGGGAG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	24	38	-	9.93103	2.07e-05	0.0302	CTCCGCCCCCACGGA
EGR3	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	36	50	-	9.93103	2.07e-05	0.0302	CCCCGCCCCCGGATA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	46	60	-	9.93103	2.07e-05	0.0302	CTCCGCCCCCACGGA
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	-	13.1286	2.07e-05	0.173	AGCAGCTGGT
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	-	13.1286	2.07e-05	0.173	AGCAGCTGGT
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	12.5769	2.07e-05	0.145	CGCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	+	12.5769	2.07e-05	0.145	ATCACGTGCG
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	12.5769	2.07e-05	0.145	CGCACGTGCC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	12.5769	2.07e-05	0.145	CGCACGTGCC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	-	12.5769	2.07e-05	0.145	ATCACGTGCG
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	12.5769	2.07e-05	0.145	CGCACGTGCC
E2F7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	89	102	+	0.983607	2.07e-05	1	TCTTGCCGCCACAA
E2F7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	89	102	+	0.983607	2.07e-05	1	TCTTGCCGCCACAA
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	98	113	-	-3.5	2.07e-05	0.317	AGAGCCCTCACGACCC
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	98	113	-	-3.5	2.07e-05	0.317	AGAGCCCTCACGACCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	36	47	+	12.9273	2.07e-05	0.0548	GGCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	30	41	-	12.9273	2.07e-05	0.0548	GGCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	68	79	-	12.9273	2.07e-05	0.0548	GGCCCCGGGGCG
Sox1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	+	8.24138	2.07e-05	1	TACAATTTAATTGTC
Sox1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	+	8.24138	2.07e-05	1	TACAATTTAATTGTC
Sox1	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	-	8.24138	2.07e-05	1	TACAATTTAATTGTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	33	43	+	13.1731	2.07e-05	0.00806	GCTCCGCCCTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	33	43	+	13.1731	2.07e-05	0.00806	GCTCCGCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	33	43	+	13.1731	2.07e-05	0.00806	GCTCCGCCCTT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	33	43	+	13.1731	2.07e-05	0.00806	GCTCCGCCCTT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	55	-	9.76596	2.07e-05	0.0959	TCTCCCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	55	-	9.76596	2.07e-05	0.0959	TCTCCCCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	55	-	9.76596	2.07e-05	0.0959	TCTCCCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	55	-	9.76596	2.07e-05	0.0959	TCTCCCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	55	-	9.76596	2.07e-05	0.0959	TCTCCCCCGCGGCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	83	96	+	11.7069	2.07e-05	0.0222	CGCCCCGCCTCCCT
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	92	105	+	12.4138	2.07e-05	0.132	CCTCCCTTAGCAAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	4	17	-	12.4138	2.07e-05	0.132	CCTCCCTTAGCAAC
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	+	12.8525	2.07e-05	0.0554	AGCCCCGTGGGCC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	-	12.8525	2.07e-05	0.0554	AGCCCCGTGGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	-	12.8525	2.07e-05	0.0554	AGCCCTGCCGGCA
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	+	13.7021	2.07e-05	0.169	GGTGAGTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	+	13.7021	2.07e-05	0.169	GGTGAGTCACT
FOS	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	-	13.7021	2.07e-05	0.169	GGTGAGTCACT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	30	47	+	-9.01316	2.07e-05	0.0319	GGGAGGAGGCGGGGAGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	23	40	-	-9.01316	2.07e-05	0.0319	GGAGGGAGGGGGGCAGGA
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	34	+	11.1475	2.07e-05	0.176	TGCCCCCCGGGGCC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	34	+	11.1475	2.07e-05	0.176	TGCCCCCCGGGGCC
GLIS2	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	38	-	11.1475	2.07e-05	0.176	TGCCCCCCGGGGCC
GLIS2	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	90	+	11.1475	2.07e-05	0.176	TGCCCCCCGGGGCC
GLIS2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	94	-	11.1475	2.07e-05	0.176	TGCCCCCCGGGGCC
ELK4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	47	-	13.3091	2.07e-05	0.0419	AGACTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	68	78	+	13.3091	2.07e-05	0.0419	AGACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	78	-	13.3091	2.07e-05	0.0419	GAGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	78	-	13.3091	2.07e-05	0.0419	GAGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	78	-	13.3091	2.07e-05	0.0419	GAGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	78	-	13.3091	2.07e-05	0.0419	GAGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	84	-	13.3091	2.07e-05	0.0419	AGACTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	84	-	13.3091	2.07e-05	0.0419	AGACTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	84	-	13.3091	2.07e-05	0.0419	AGACTTCCGGC
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	16	30	+	13.1702	2.07e-05	0.311	GGCCGTGAGGTCATC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	16	30	+	13.1702	2.07e-05	0.311	GGCCGTGAGGTCATC
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	85	99	-	13.1702	2.07e-05	0.311	GGCCGTGAGGTCATC
SP8	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	27	38	+	12.75	2.07e-05	0.0189	GCCACCCCTCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	24	40	-	7.92727	2.07e-05	0.017	CCGGCTCCGCCCCACCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	24	40	-	7.92727	2.07e-05	0.017	CCGGCTCCGCCCCACCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	24	40	-	7.92727	2.07e-05	0.017	CCGGCTCCGCCCCACCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	24	40	-	7.92727	2.07e-05	0.017	CCGGCTCCGCCCCACCC
USF1	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	33	43	-	13.1224	2.07e-05	0.107	AGCATGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	35	+	13.1224	2.07e-05	0.107	CTCACGTGACG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	35	+	13.1224	2.07e-05	0.107	CTCACGTGACG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	35	+	13.1224	2.07e-05	0.107	CTCACGTGACG
USF1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	29	39	+	13.1224	2.07e-05	0.107	AGCATGTGACT
USF1	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	30	40	+	13.1224	2.07e-05	0.107	AGCATGTGACT
SRF	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	84	99	-	8.83607	2.07e-05	0.48	CAGCTATATAAGGTCA
SRF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	47	62	+	8.83607	2.07e-05	0.48	CAGCTATATAAGGTCA
SRF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	47	62	+	8.83607	2.07e-05	0.48	CAGCTATATAAGGTCA
SPI1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	22	35	+	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	32	45	+	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	32	45	+	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	50	63	-	7.18182	2.07e-05	0.127	AAAAAGAGGAACGC
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	50	63	-	7.18182	2.07e-05	0.127	AAAAAGAGGAACGC
SPI1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	83	-	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	93	-	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	93	-	7.18182	2.07e-05	0.127	AGTAACAGGAAGTT
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	34	48	+	12.5586	2.07e-05	0.142	TTAGGGGAGAGGACA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	66	76	+	12.9091	2.07e-05	0.206	AGCCGGAAGTA
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	66	76	+	12.9091	2.07e-05	0.206	AGCCGGAAGTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	40	54	+	11.9571	2.07e-05	0.0958	TTGGGGCAGAGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	41	55	-	11.9571	2.07e-05	0.0958	TTGGGGCAGAGGGGA
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	57	69	+	13.6122	2.08e-05	0.12	ACCAGCTGCCCGG
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	57	69	+	13.6122	2.08e-05	0.12	ACCAGCTGCCCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	40	57	+	-9.02632	2.08e-05	0.0319	GGGAGGAAGCCCGGCTGC
ATF4	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	74	86	-	12.4262	2.08e-05	0.506	GACTGATGTAACC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	17	30	+	11.9836	2.08e-05	0.365	CTTCCCGTGGGATC
NRF1	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	11	21	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	38	48	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	51	61	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	55	65	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	55	65	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	62	72	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	54	64	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	54	64	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	54	64	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	54	64	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	70	80	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	66	76	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	79	89	+	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	94	104	-	12.5636	2.08e-05	0.0108	GAGCGGGCGCG
SP2	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	38	52	+	12.7241	2.08e-05	0.00691	CGCCCACCCCCGGCT
SP2	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	45	59	+	12.7241	2.08e-05	0.00691	CCTCCTCCCCCGGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	65	+	12.7241	2.08e-05	0.00691	GCCCCACCCCGGCTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	65	+	12.7241	2.08e-05	0.00691	GCCCCACCCCGGCTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	65	+	12.7241	2.08e-05	0.00691	GCCCCACCCCGGCTG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	54	68	+	12.7241	2.08e-05	0.00691	GCTCCTCCCACGGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	54	68	+	12.7241	2.08e-05	0.00691	GCTCCTCCCACGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	54	68	+	12.7241	2.08e-05	0.00691	GCTCCTCCCACGGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	54	68	+	12.7241	2.08e-05	0.00691	GCTCCTCCCACGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	66	80	+	12.7241	2.08e-05	0.00691	TCCCCTCCTCTGGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	5	19	-	12.7241	2.08e-05	0.00691	GCCCCTCCTCGAGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	5	19	-	12.7241	2.08e-05	0.00691	GCCCCTCCTCGAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	26	40	-	12.7241	2.08e-05	0.00691	TCCCCTCCTCTGGCG
SP2	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	56	70	-	12.7241	2.08e-05	0.00691	CCTCCTCCCCCGGCG
SP2	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	58	72	-	12.7241	2.08e-05	0.00691	ACCCCTCCTCCTCAG
SP2	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	63	77	-	12.7241	2.08e-05	0.00691	CGCCCACCCCCGGCT
ETV5	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.2909	2.08e-05	0.0777	AGCGGAAGTA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	30	49	-	7.45872	2.08e-05	0.0468	CCCCCACCCCAGCCACACCC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	39	+	7.45872	2.08e-05	0.0468	CCCCCACCCCAGCCACACCC
Myog	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	21	+	13.6939	2.08e-05	0.108	AACAGCTGGTA
Myog	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	94	104	-	13.6939	2.08e-05	0.108	GACAGGTGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	10	28	+	11.3115	2.08e-05	0.083	CCGCCAGGGGGTGGAGCAG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	10	28	+	11.3115	2.08e-05	0.083	CCGCCAGGGGGTGGAGCAG
CTCF	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	31	49	-	11.3115	2.08e-05	0.083	GGGCCGCCGGGGGGAGGGG
PRDM1	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	15	29	+	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	90	104	+	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	11	25	-	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	11	25	-	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	11	25	-	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	11	25	-	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	86	100	-	12.5818	2.08e-05	0.266	AGAAATCGAAAGTGA
E2F4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	11	21	+	13.5172	2.08e-05	0.0448	ACGCGGGAGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	5	15	-	13.5172	2.08e-05	0.0448	ACGCGGGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	43	53	-	13.5172	2.08e-05	0.0448	ACGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	62	72	+	13.5172	2.08e-05	0.0448	ACGCGGGAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	94	104	-	13.5172	2.08e-05	0.0448	ACGCGGGAGGG
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	97	107	+	13.2586	2.08e-05	0.76	TGGTGTTTACA
POU4F2	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	35	50	+	10.2182	2.08e-05	1	TTGCATAAATAAAGAA
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	65	85	-	11.7097	2.08e-05	0.141	CACTTCTCTCTCTTTCTGTCT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	93	113	-	11.7097	2.08e-05	0.141	CACTTCTCTCTCTTTCTGTCT
NFIX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	19	27	-	10.8936	2.08e-05	0.758	AGTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	19	27	-	10.8936	2.08e-05	0.758	AGTGCCAAG
NFIX	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	35	43	+	10.8936	2.08e-05	0.758	GGTGCCAAA
NFIX	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	43	51	-	10.8936	2.08e-05	0.758	AGTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	64	72	+	10.8936	2.08e-05	0.758	AGTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	64	72	+	10.8936	2.08e-05	0.758	AGTGCCAAG
NFIX	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	80	88	+	10.8936	2.08e-05	0.758	GGTGCCAAA
NFIX	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	88	96	+	10.8936	2.08e-05	0.758	AGTGCCAAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	2	12	+	13.7455	2.08e-05	0.14	AAATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	2	12	+	13.7455	2.08e-05	0.14	AAATGACTCAT
FOSL2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	34	44	+	13.7455	2.08e-05	0.14	AAATGACTCAT
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	30	40	-	13.7455	2.08e-05	0.14	GTATGACTCAT
FOSL2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	71	81	-	13.7455	2.08e-05	0.14	AAATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	102	112	-	13.7455	2.08e-05	0.14	AAATGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	102	112	-	13.7455	2.08e-05	0.14	AAATGACTCAT
MSC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	12.9878	2.08e-05	0.569	AACACCTGCT
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	80	94	-	8.64045	2.08e-05	0.175	GGCCTCCTGGGTTTC
MYBL1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	67	78	+	12.4483	2.08e-05	1	CCCGTTAACGTT
MYBL1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	37	48	-	12.4483	2.08e-05	1	CCCGTTAACGTT
EGR4	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	61	76	-	12.3636	2.08e-05	0.0374	CCACGCCCTCCCCCAC
RXRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	18	31	-	5.10909	2.08e-05	0.387	GAGATCAAAGTTCG
RXRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	18	31	-	5.10909	2.08e-05	0.387	GAGATCAAAGTTCG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	13	30	-	11.878	2.08e-05	0.0873	TGCCCCCTCATTGGCCTC
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	13	30	-	11.878	2.08e-05	0.0873	TGCCCCCTCATTGGCCTC
EGR2	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	14	24	-	12.0172	2.08e-05	0.0649	CCGCACACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	27	37	+	12.0172	2.08e-05	0.0649	CCGCCCACGGG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	27	37	+	12.0172	2.08e-05	0.0649	CCGCCCACGGG
Klf12	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	34	48	+	11.2951	2.08e-05	0.0371	AACCCCGCCCACAAG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	66	76	+	13.0909	2.08e-05	0.047	AGCCTGGGGCA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	74	+	7.44954	2.08e-05	0.0468	CCCCCACCCCACCCCGCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	74	+	7.44954	2.08e-05	0.0468	CCCCCACCCCACCCCGCTGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	74	+	7.44954	2.08e-05	0.0468	CCCCCACCCCACCCCGCTGC
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	81	91	+	13.0132	2.08e-05	1	GCCATAAATAA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	1	15	-	12.4909	2.08e-05	0.0974	CCCCGCCCGCCGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	1	15	-	12.4909	2.08e-05	0.0974	CCCCGCCCGCCGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	1	15	-	12.4909	2.08e-05	0.0974	CCCCGCCCGCCGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	1	15	-	12.4909	2.08e-05	0.0974	CCCCGCCCGCCGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	46	60	-	12.4909	2.08e-05	0.0974	GCACCCCTGCAGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	46	60	-	12.4909	2.08e-05	0.0974	GCACCCCTGCAGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	85	99	-	12.4909	2.08e-05	0.0974	GCACCCCTGCAGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	85	99	-	12.4909	2.08e-05	0.0974	GCACCCCTGCAGCGG
HES5	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	-	7.56897	2.08e-05	0.247	TGACACATGCCT
HES5	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	+	7.56897	2.08e-05	0.247	TGACACATGCCT
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	92	106	+	12.197	2.08e-05	0.232	CACCGTGACAATGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	92	106	+	12.197	2.08e-05	0.232	CACCGTGACAATGCA
JUND	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	+	13.5106	2.08e-05	0.169	GCTGACTCATT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	30	46	-	7.90909	2.08e-05	0.0171	TAGACACCGCCCACTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	30	46	-	7.90909	2.08e-05	0.0171	TAGACACCGCCCACTCG
TFEC	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	12.8049	2.08e-05	0.129	CTCACGTGAT
TFEC	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	12.8049	2.08e-05	0.129	CTCACGTGAT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	49	66	+	-9.05263	2.09e-05	0.0319	GGAGGAGGGGAAGACGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	62	79	+	-9.05263	2.09e-05	0.0319	GAACGGCGGGCAGGAAGT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	-	12.9231	2.09e-05	0.0703	CCCCTGAGGCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	63	79	-	12.1837	2.09e-05	0.338	GGGTCACGTGCCGCGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	63	79	-	12.1837	2.09e-05	0.338	GGGTCACGTGCCGCGCA
T	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	90	105	-	10.8462	2.09e-05	1	TCACAGCCTGGTGCCA
T	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	90	105	-	10.8462	2.09e-05	1	TCACAGCCTGGTGCCA
MLX	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	-	12.9143	2.09e-05	0.205	TTCACGTGGT
HLTF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	52	61	-	8.92683	2.09e-05	1	GACCTTATAT
HLTF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	52	61	-	8.92683	2.09e-05	1	GACCTTATAT
HLTF	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	85	94	+	8.92683	2.09e-05	1	GACCTTATAT
NFKB2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	1	13	-	11.5455	2.09e-05	0.225	AGGGATTCCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	102	114	+	11.5455	2.09e-05	0.225	AGGGATTCCCCCG
BATF3	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	17	30	+	5.42424	2.09e-05	0.115	CCCTGACGTCACCC
BATF3	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	85	98	-	5.42424	2.09e-05	0.115	CCCTGACGTCACCC
SP3	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	8	18	+	12.7398	2.09e-05	0.0129	GCCACGCCTAT
SP3	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	97	107	-	12.7398	2.09e-05	0.0129	GCCACGCCTAT
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	45	56	-	12.6034	2.09e-05	0.33	CCGCCCACCCTA
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	45	56	-	12.6034	2.09e-05	0.33	CCGCCCACCCTA
Zfx	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	84	97	+	13.1061	2.09e-05	0.0331	TCAGCTTCGGCCTC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	54	74	-	11.8571	2.09e-05	0.00992	GGAGATGGCGGTGGGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	54	74	-	11.8571	2.09e-05	0.00992	GGAGATGGCGGTGGGGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	54	74	-	11.8571	2.09e-05	0.00992	GGAGATGGCGGTGGGGAGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	75	95	-	11.8571	2.09e-05	0.00992	AGGGAAGGAAGTAAGGAAAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	25	45	+	11.8571	2.09e-05	0.00992	TGAGGCTGTCGGGAAGGAGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	41	61	+	11.8571	2.09e-05	0.00992	GGAGATGGCGGTGGGGAGGAG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	22	39	-	-9.06579	2.09e-05	0.0319	GGAGGGGAGCCTGCAGGG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	9	22	-	8.87755	2.09e-05	0.365	TGCCAGGATGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	9	22	-	8.87755	2.09e-05	0.365	TGCCAGGATGCCAG
JUN	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	61	73	+	13.1224	2.09e-05	0.301	AGTGTGACGTCAT
JUN	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	66	78	+	13.1224	2.09e-05	0.301	AGTGTGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	22	34	-	13.1224	2.09e-05	0.301	GAAATGAGGCAAT
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	22	34	-	13.1224	2.09e-05	0.301	GAAATGAGGCAAT
JUN	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	37	49	-	13.1224	2.09e-05	0.301	AGTGTGACGTCAT
JUN	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	42	54	-	13.1224	2.09e-05	0.301	AGTGTGACGTCAT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	18	27	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	18	27	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	18	27	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	18	27	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	21	30	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	46	55	-	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	60	69	+	12.633	2.09e-05	0.038	TCCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	60	69	+	12.633	2.09e-05	0.038	TCCCCCCCTC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	57	67	+	12.8727	2.09e-05	0.206	AGCCGGATCTG
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	61	71	-	12.8727	2.09e-05	0.206	AGCCGGATCTG
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	12	22	-	12.7241	2.09e-05	0.0125	GACCCACCCCT
E2F8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	45	56	+	7.92683	2.09e-05	0.631	TTTCCCACCCAT
E2F8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	45	56	+	7.92683	2.09e-05	0.631	TTTCCCACCCAT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	44	54	+	13.5	2.09e-05	0.0448	GAGCGGGAAGC
E2F4	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	103	113	-	13.5	2.09e-05	0.0448	GAGCGGGAAGC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	30	39	-	12.0816	2.09e-05	0.597	ATTACACAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	30	39	-	12.0816	2.09e-05	0.597	ATTACACAAT
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	40	49	+	12.0816	2.09e-05	0.597	ATTACACAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	40	49	+	12.0816	2.09e-05	0.597	ATTACACAAT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	70	83	-	13.2586	2.09e-05	0.191	CTTCCTGGAAATCC
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	70	83	-	13.2586	2.09e-05	0.191	CTTCCTGGAAATCC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	+	12.7069	2.09e-05	0.0554	TGCCGGCAGGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	-	13.2727	2.09e-05	0.063	CCCCTGAGGCT
CREB3	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	34	47	-	12.2429	2.09e-05	0.206	GGGCTACGTCACAG
CREB3	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	55	68	-	12.2429	2.09e-05	0.206	GCGAGACGTCAGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	9	27	+	11.2951	2.09e-05	0.083	ACGTCACCGGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	9	27	+	11.2951	2.09e-05	0.083	ACGTCACCGGGGGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	9	27	+	11.2951	2.09e-05	0.083	ACGTCACCGGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	9	27	+	11.2951	2.09e-05	0.083	ACGTCACCGGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	9	27	+	11.2951	2.09e-05	0.083	ACGTCACCGGGGGGCGGGG
Myog	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	92	102	+	13.6735	2.09e-05	0.108	GGCAGCTGAAG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	+	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	+	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	36	49	+	5.40909	2.09e-05	0.115	TGGTGACGTTACTA
BATF3	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	+	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	-	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	-	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	-	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	-	5.40909	2.09e-05	0.115	TTGTGACGTCACGG
BATF3	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	62	75	-	5.40909	2.09e-05	0.115	TGGTGACGTTACTA
EGR3	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	34	48	+	9.89655	2.09e-05	0.0302	CCACGCCCCGGCGTG
EGR3	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	67	81	-	9.89655	2.09e-05	0.0302	CCACGCCCCGGCGTG
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	50	64	+	8.62921	2.09e-05	0.175	GGCAACCTGGGTTCC
EHF	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	29	-	12.5574	2.09e-05	0.107	GAAGCGGAAGTG
EHF	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	86	97	+	12.5574	2.09e-05	0.107	GAAGCGGAAGTG
POU2F1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	4	15	-	12.7	2.1e-05	1	CCTATGCTAATT
FIGLA	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	19	-	12.8103	2.1e-05	0.859	CACACCTGTT
FIGLA	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	105	+	12.8103	2.1e-05	0.859	CACACCTGTT
XBP1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	10	23	-	12.2885	2.1e-05	0.446	GCTGAGACGTCATC
XBP1	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	35	48	-	12.2885	2.1e-05	0.446	AGGGCTACGTCACA
ATF7	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	17	30	+	10.6286	2.1e-05	0.118	TCATGACGTAAGCG
ATF7	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	40	53	+	10.6286	2.1e-05	0.118	TCATGACGTAAGCG
ATF7	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	62	75	-	10.6286	2.1e-05	0.118	TCATGACGTAAGCG
ATF7	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	85	98	-	10.6286	2.1e-05	0.118	TCATGACGTAAGCG
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	13.1346	2.1e-05	0.278	CGCACGTGCT
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	13.1346	2.1e-05	0.278	CGCACGTGCT
MAX	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	13.1346	2.1e-05	0.278	CGCACGTGCT
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	13.1346	2.1e-05	0.278	CGCACGTGCT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	100	113	-	12.5769	2.1e-05	0.0123	CCAACGCCTCCGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	-	12.8197	2.1e-05	0.0554	CGCCCCTCGGGCC
Klf12	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	30	44	+	11.2787	2.1e-05	0.0371	GACCACGCCTCTTGG
Klf12	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	71	85	-	11.2787	2.1e-05	0.0371	GACCACGCCTCTTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	20	34	+	12.7069	2.1e-05	0.00696	CCCCCACCCCGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	20	34	+	12.7069	2.1e-05	0.00696	CCCCCACCCCGCCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	33	47	+	12.7069	2.1e-05	0.00696	TGCCCACCCCCACGC
SP2	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	34	48	+	12.7069	2.1e-05	0.00696	TGCCCGCCTACTGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	30	44	-	12.7069	2.1e-05	0.00696	TGCCCACCCCCACGC
SP2	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	67	81	-	12.7069	2.1e-05	0.00696	TGCCCGCCTACTGGC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	41	52	+	12.9091	2.1e-05	0.0548	CCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	+	12.9091	2.1e-05	0.0548	TGCCTTCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	67	78	+	12.9091	2.1e-05	0.0548	CGCCCCGAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	67	78	+	12.9091	2.1e-05	0.0548	CGCCCCGAGCCG
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	71	82	+	12.9091	2.1e-05	0.0548	CCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	36	-	12.9091	2.1e-05	0.0548	CCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	44	-	12.9091	2.1e-05	0.0548	CCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	47	58	-	12.9091	2.1e-05	0.0548	CGCCCCGAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	47	58	-	12.9091	2.1e-05	0.0548	CGCCCCGAGCCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	-	12.9091	2.1e-05	0.0548	TGCCTTCAGGCT
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	97	-	12.9091	2.1e-05	0.0548	CCCCCTAGGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	3	13	-	13.3469	2.1e-05	0.0814	TCCATGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	3	13	-	13.3469	2.1e-05	0.0814	TCCATGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	28	38	-	13.3469	2.1e-05	0.0814	GTCATGTGACG
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	24	34	+	13.3469	2.1e-05	0.0814	TCCATGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	24	34	+	13.3469	2.1e-05	0.0814	TCCATGTGACC
MAX::MYC	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	40	50	+	12.8163	2.1e-05	0.285	TGACACGTGGT
MAX::MYC	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	75	-	12.8163	2.1e-05	0.285	TGACACGTGGT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	65	78	-	9.7234	2.1e-05	0.0959	GGCCGCCTGCAGAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	65	78	-	9.7234	2.1e-05	0.0959	GGCCGCCTGCAGAG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	-	12.8909	2.1e-05	0.0893	TCCCTCCGGGCG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	-	12.2273	2.1e-05	0.144	CATTGTCACGGTAACC
PRDM1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	73	87	+	12.5636	2.1e-05	0.266	AGGAAGTGAGAGGAG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	13	27	-	12.5636	2.1e-05	0.266	AGAAAAAGAAAGCAA
PRDM1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	47	61	-	12.5636	2.1e-05	0.266	AGAAAAAGAAAGCAA
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	65	79	-	12.5636	2.1e-05	0.266	AGAAAAAGAAAGCAA
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	65	79	-	12.5636	2.1e-05	0.266	AGAAAAAGAAAGCAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	60	77	-	-9.09211	2.1e-05	0.0319	GGAAGGAGTGGAGCTCAG
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	9	23	-	10.5789	2.1e-05	0.167	GTCATGACGCCGCAC
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	32	46	-	10.5789	2.1e-05	0.167	GTCATGACGCCGCAC
Bach1::Mafk	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	69	83	+	10.5789	2.1e-05	0.167	GTCATGACGCCGCAC
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	92	106	+	10.5789	2.1e-05	0.167	GTCATGACGCCGCAC
SCRT1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	66	80	+	10.8689	2.1e-05	0.494	ACCCAACAGGTATGC
ETS1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	13.1207	2.1e-05	0.076	AGCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	13.1207	2.1e-05	0.076	AGCGGAAGTG
E2F2	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	63	78	-	5.41463	2.1e-05	1	AAAAAAGCGCCAGTTT
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	50	70	-	8.22449	2.1e-05	0.207	ACCAGGACCTGGGGTGGCGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	50	70	-	8.22449	2.1e-05	0.207	ACCAGGACCTGGGGTGGCGCC
HESX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	-	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	+	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	+	12.1091	2.1e-05	1	TCTAATTGGC
HESX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	+	12.1091	2.1e-05	1	TCTAATTGGC
KLF5	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	21	30	-	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	39	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	26	35	-	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	26	35	-	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	27	36	-	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	36	45	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	39	48	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	39	48	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	79	88	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	85	94	+	13.4694	2.1e-05	0.0108	TCCCCTCCCA
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	12	30	-	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	12	30	-	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	12	30	-	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	12	30	-	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	39	57	+	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	58	76	-	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
PAX5	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	85	103	+	12.5323	2.1e-05	0.137	TGGCGTGGCCGGGCGTGGC
NHLH1	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	7	16	-	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	99	108	+	13.069	2.1e-05	0.102	AGCAGCTGAG
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	33	44	+	13.4	2.1e-05	1	AGGCATATGCTT
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	33	44	+	13.4	2.1e-05	1	AGGCATATGCTT
NFYB	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	69	83	-	13.0385	2.1e-05	0.0969	GAGGAAGCCAATGAG
Hic1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	12	20	+	12.7308	2.1e-05	0.516	ATGCCACCC
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	82	90	+	12.7308	2.1e-05	0.516	ATGCCACCC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	12.8873	2.1e-05	0.0839	CCCGGAAGTC
ETV3	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	12.8873	2.1e-05	0.0839	CCCGGAAGTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	8	23	+	12.3455	2.1e-05	0.0374	CACCTCCCCCGCGCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	8	23	+	12.3455	2.1e-05	0.0374	CACCTCCCCCGCGCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	8	23	+	12.3455	2.1e-05	0.0374	CACCTCCCCCGCGCTC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	39	54	-	12.3455	2.1e-05	0.0374	TCCCGCCCCCGCTGCG
EGR4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	61	76	+	12.3455	2.1e-05	0.0374	TCCCGCCCCCGCTGCG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	97	112	-	12.3455	2.1e-05	0.0374	CAACGCCTCCGCACCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	4	17	+	9.05102	2.1e-05	0.0605	GGGGGTTAAGGGGC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	9	22	-	9.05102	2.1e-05	0.0605	GCGGCGGAAGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	9	22	-	9.05102	2.1e-05	0.0605	GCGGCGGAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	9	22	-	9.05102	2.1e-05	0.0605	GCGGCGGAAGGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	57	70	-	9.05102	2.1e-05	0.0605	GTGGCGGAGAGGGG
Klf1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	68	78	+	13.0303	2.1e-05	0.0428	GGCCCCTCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	80	90	+	13.0303	2.1e-05	0.0428	GGCCCCTCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	15	25	-	13.0303	2.1e-05	0.0428	GGCCCCTCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	25	35	-	13.0303	2.1e-05	0.0428	GGCCCCTCCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	29	39	-	13.0303	2.1e-05	0.0428	GGCCCCTCCCA
Gabpa	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	3	13	+	13.1803	2.1e-05	0.0413	GCGGAAGTCCC
Gabpa	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	55	65	+	13.1803	2.1e-05	0.0413	GCGGAAGTCCC
Gabpa	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	50	60	-	13.1803	2.1e-05	0.0413	GCGGAAGTCCC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	78	88	-	13.1803	2.1e-05	0.0413	CCGGAAGCTGA
Gabpa	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	102	112	-	13.1803	2.1e-05	0.0413	GCGGAAGTCCC
FEV	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	12.9615	2.1e-05	0.0872	ACCGGAAACG
SOX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	71	85	+	5.69388	2.1e-05	1	AAAAATAGCAGTGTG
SP8	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	41	52	+	12.7237	2.1e-05	0.0192	CCCACGGCCCCT
SP8	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	63	74	-	12.7237	2.1e-05	0.0192	CCCACGGCCCCT
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	12	27	-	-3.57692	2.1e-05	0.317	TGACGCCACACGTAGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	62	77	-	-3.57692	2.1e-05	0.317	TGACCCTCCAGGAAGG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	62	77	-	-3.57692	2.1e-05	0.317	TGACCCTCCAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	75	92	-	-9.10526	2.11e-05	0.0319	GAAAAAAGGCAAGCAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	78	95	-	-9.10526	2.11e-05	0.0319	GGAAGGCGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	78	95	-	-9.10526	2.11e-05	0.0319	GGAAGGCGAGGAGGAGGA
STAT3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	15	25	+	13.2245	2.11e-05	0.196	CTTCCGGGAAC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	42	52	+	13.2245	2.11e-05	0.196	CTTCCGGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	42	52	+	13.2245	2.11e-05	0.196	CTTCCGGGAAC
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	42	52	+	13.2245	2.11e-05	0.196	CTTCCGGGAAC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	42	52	+	13.2245	2.11e-05	0.196	CTTCCGGGAAC
STAT3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	90	100	-	13.2245	2.11e-05	0.196	CTTCCGGGAAC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	54	67	-	9.46341	2.11e-05	0.5	ACTGCTCACGTCAC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	54	67	-	9.46341	2.11e-05	0.5	ACTGCTCACGTCAC
HINFP	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	13	24	+	12.9242	2.11e-05	0.109	GAGGGTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	49	60	+	12.9242	2.11e-05	0.109	GGCCGTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	49	60	+	12.9242	2.11e-05	0.109	GGCCGTCCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	49	60	+	12.9242	2.11e-05	0.109	GGCCGTCCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	49	60	+	12.9242	2.11e-05	0.109	GGCCGTCCGCGT
HINFP	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	91	102	-	12.9242	2.11e-05	0.109	GAGGGTCCGCTC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	73	86	+	3.07273	2.11e-05	0.51	TCGATACAGAAAGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	35	+	12.4727	2.11e-05	0.0974	TGCCCCCCGGGGCCT
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	35	+	12.4727	2.11e-05	0.0974	TGCCCCCCGGGGCCT
ZIC4	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	24	38	-	12.4727	2.11e-05	0.0974	TGCCCCCCGGGGCCT
ZIC4	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	91	+	12.4727	2.11e-05	0.0974	TGCCCCCCGGGGCCT
ZIC4	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	80	94	-	12.4727	2.11e-05	0.0974	TGCCCCCCGGGGCCT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	17	33	+	7.87273	2.11e-05	0.0171	ATAACCCCCCCCCCGCT
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	13	29	-	7.87273	2.11e-05	0.0171	GACGCCCCGCCCCGGCA
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	36	52	-	7.87273	2.11e-05	0.0171	GACGCCCCGCCCCGGCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	38	54	-	7.87273	2.11e-05	0.0171	ATAACCCCCCCCCCGCT
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	63	79	+	7.87273	2.11e-05	0.0171	GACGCCCCGCCCCGGCA
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	86	102	+	7.87273	2.11e-05	0.0171	GACGCCCCGCCCCGGCA
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	67	82	+	2.67347	2.11e-05	0.877	GAGGGCAAAGGGTCTC
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	67	82	+	2.67347	2.11e-05	0.877	GAGGGCAAAGGGTCTC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	24	+	12.8197	2.11e-05	0.064	GGCCCCGGGGGGG
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	33	42	+	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	33	42	+	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	33	42	+	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	33	42	+	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	101	110	+	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	5	14	-	12.8283	2.11e-05	0.23	TGGGTTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	73	82	-	12.8283	2.11e-05	0.23	TGGGTTTTCC
E2F6	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	81	91	-	13.431	2.11e-05	0.0406	GGGAGGGAGCA
E2F6	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	24	34	+	13.431	2.11e-05	0.0406	GGGAGGGAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	28	38	+	12.6182	2.11e-05	0.108	ACCAGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	28	38	+	12.6182	2.11e-05	0.108	ACCAGGAAGCT
ELF5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	75	-	12.6182	2.11e-05	0.108	TCCCGGAAGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	32	42	+	12.5455	2.11e-05	0.011	GCGGCTGCCCA
NRF1	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	73	83	-	12.5455	2.11e-05	0.011	GCGGCTGCCCA
IRF1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	48	68	-	11.6774	2.11e-05	0.142	CTCCCCTTCCCCTTTCTCTTA
ELF1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	25	36	+	12.0364	2.11e-05	0.0859	ATCCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	90	-	12.0364	2.11e-05	0.0859	ATCCCGGAAACG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	90	-	12.0364	2.11e-05	0.0859	ATCCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	90	-	12.0364	2.11e-05	0.0859	ATCCCGGAAACG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	90	-	12.0364	2.11e-05	0.0859	ATCCCGGAAACG
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	38	55	+	-3.80303	2.11e-05	1	GAGGGCAGGAGGTCCATC
RARA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	38	55	+	-3.80303	2.11e-05	1	GAGGGCAGGAGGTCCATC
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	28	45	-	-3.80303	2.11e-05	1	GAGGGCAGGAGGTCCATC
RARA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	28	45	-	-3.80303	2.11e-05	1	GAGGGCAGGAGGTCCATC
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.2.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.0.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.7.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.6.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.1.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.3.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.8.0	38	52	+	10.8525	2.11e-05	0.494	CATCCACAGGTTTTT
HSF4	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	13	25	-	12.7927	2.11e-05	1	TTCTAGTAATTTC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	22	36	+	11.2623	2.11e-05	0.0371	GGCCCCACCCAGCTG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	22	36	+	11.2623	2.11e-05	0.0371	GGCCCCACCCAGCTG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	81	95	-	11.2623	2.11e-05	0.0371	GGCCCCACCCAGCTG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	81	95	-	11.2623	2.11e-05	0.0371	GGCCCCACCCAGCTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	2	22	-	11.8367	2.11e-05	0.00999	GGAGACAAAGGAGAGGGGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	19	39	-	11.8367	2.11e-05	0.00999	GGGTGTGGCTGGGGTGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	32	52	-	11.8367	2.11e-05	0.00999	CGAGGAGGACGGTGTGAGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	32	52	-	11.8367	2.11e-05	0.00999	CGAGGAGGACGGTGTGAGGGT
ZNF263	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	34	54	-	11.8367	2.11e-05	0.00999	GGTGGAAGCGGGAGGAGGAAC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	30	50	+	11.8367	2.11e-05	0.00999	GGGTGTGGCTGGGGTGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	61	81	+	11.8367	2.11e-05	0.00999	GGTGGAAGCGGGAGGAGGAAC
ZNF263	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	63	83	+	11.8367	2.11e-05	0.00999	CGAGGAGGACGGTGTGAGGGT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	37	46	+	10.3629	2.11e-05	0.043	GGCTCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	37	46	+	10.3629	2.11e-05	0.043	GGCTCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	37	46	-	10.3629	2.11e-05	0.043	GGCACGAGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	37	46	-	10.3629	2.11e-05	0.043	GGCACGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	79	88	+	10.3629	2.11e-05	0.043	GGCTCGTGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	79	88	+	10.3629	2.11e-05	0.043	GGCTCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	79	88	-	10.3629	2.11e-05	0.043	GGCACGAGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	79	88	-	10.3629	2.11e-05	0.043	GGCACGAGCC
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	2	14	+	13.0172	2.11e-05	0.947	CTCATTTACATTT
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	2	14	+	13.0172	2.11e-05	0.947	CTCATTTACATTT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	53	66	+	9.70213	2.11e-05	0.0959	GACCCGCCGCGGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	53	66	+	9.70213	2.11e-05	0.0959	GACCCGCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	53	66	+	9.70213	2.11e-05	0.0959	GACCCGCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	53	66	+	9.70213	2.11e-05	0.0959	GACCCGCCGCGGCG
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	71	80	-	12.4944	2.11e-05	0.93	CGTCTGGCAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	71	80	-	12.4944	2.11e-05	0.93	CGTCTGGCAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	71	80	-	12.4944	2.11e-05	0.93	CGTCTGGCAG
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	46	56	+	13.1897	2.12e-05	0.76	TGCTGTTTATT
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	46	56	+	13.1897	2.12e-05	0.76	TGCTGTTTATT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	2	12	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	2	12	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	2	12	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	2	12	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	3	13	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	3	13	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	3	13	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	3	13	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	17	27	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	17	27	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	20	30	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	20	30	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	18	28	-	13.1538	2.12e-05	0.00807	CCCCCGCCTCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	18	28	-	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	18	28	-	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	29	39	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	35	45	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	51	61	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	51	61	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	51	61	+	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	54	64	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	54	64	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	54	64	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	54	64	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	54	64	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	57	67	-	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	57	67	-	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	57	67	-	13.1538	2.12e-05	0.00807	CCCCCGCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	57	67	-	13.1538	2.12e-05	0.00807	CCCCCGCCTCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	58	68	-	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	74	84	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	74	84	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	74	84	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	74	84	+	13.1538	2.12e-05	0.00807	GCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	69	79	-	13.1538	2.12e-05	0.00807	ACCCCACCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	69	79	-	13.1538	2.12e-05	0.00807	ACCCCACCCCT
SP1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	87	97	+	13.1538	2.12e-05	0.00807	CCCCCGCCTCG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	88	98	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	94	104	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	94	104	-	13.1538	2.12e-05	0.00807	CTCCCGCCCCG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	36	+	13.5918	2.12e-05	0.12	ACCACCTGTTTCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	47	58	-	10.7347	2.12e-05	0.0934	GATGACGCCATC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	47	58	-	10.7347	2.12e-05	0.0934	GATGACGCCATC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	24	34	+	12.8	2.12e-05	0.206	AACAGGATGTG
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	20	30	-	12.8	2.12e-05	0.206	AACAGGATGTG
SPDEF	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	88	98	-	12.8	2.12e-05	0.206	AACAGGATGTG
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	+	13.2424	2.12e-05	0.585	AACACGTGGA
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	-	13.2424	2.12e-05	0.585	AACACGTGGA
CLOCK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	-	13.2424	2.12e-05	0.585	AACACGTGGA
KLF13	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	37	54	+	8.44828	2.12e-05	0.16	AGGGGACGCCCACTTGTC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	12.4808	2.12e-05	0.145	GGCACGTGCG
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	12.4808	2.12e-05	0.145	GGCACGTGCG
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	12.4808	2.12e-05	0.145	GGCACGTGCG
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	12.4808	2.12e-05	0.145	GGCACGTGCG
NFYA	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	14	31	-	11.8415	2.12e-05	0.0873	AGTGAACTCATTGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	11	21	+	12.5273	2.12e-05	0.011	GCGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	58	68	-	12.5273	2.12e-05	0.011	GCGCCCGCCCG
Klf4	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	3	12	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	4	13	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	9	18	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	10	19	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	10	19	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	10	19	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	14	23	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	14	23	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	14	23	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	14	23	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	18	27	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	22	31	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	24	33	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	25	34	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	20	29	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	21	30	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	21	30	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	30	39	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	31	40	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	32	41	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	35	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	36	45	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	37	46	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	37	46	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	37	46	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	37	46	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	37	46	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	29	38	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	39	48	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	40	49	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	41	50	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	41	50	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	33	42	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	42	51	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	50	59	+	12.7041	2.12e-05	0.0127	AGGGCGTGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	57	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	58	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	58	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	64	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	64	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	64	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	64	73	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	64	73	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	56	65	-	12.7041	2.12e-05	0.0127	AGGGCGTGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	59	68	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	68	77	+	12.7041	2.12e-05	0.0127	AGGGCGTGGG
Klf4	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	77	86	+	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	79	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	84	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	93	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	112	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	104	113	-	12.7041	2.12e-05	0.0127	GGGGTGGGGG
Pax6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	33	46	+	12.5	2.12e-05	1	TTCACGCCTGGGCG
Pax6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	33	46	+	12.5	2.12e-05	1	TTCACGCCTGGGCG
Pax6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	33	46	+	12.5	2.12e-05	1	TTCACGCCTGGGCG
Pax6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	33	46	+	12.5	2.12e-05	1	TTCACGCCTGGGCG
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	31	47	+	7.85455	2.12e-05	0.0172	CCGACCCCGCCCTTCCA
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	54	70	+	7.85455	2.12e-05	0.0172	CCGACCCCGCCCTTCCA
SP4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	45	61	-	7.85455	2.12e-05	0.0172	CCGACCCCGCCCTTCCA
SP4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	68	84	-	7.85455	2.12e-05	0.0172	CCGACCCCGCCCTTCCA
EGR1	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	25	+	12.5577	2.12e-05	0.0124	ACTCCGCCCCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	62	75	-	12.5577	2.12e-05	0.0124	CCTTCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	62	75	-	12.5577	2.12e-05	0.0124	CCTTCGCCGCCGCC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	32	42	+	13.6122	2.12e-05	0.138	CAGTGACTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	60	70	+	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	95	105	+	13.6122	2.12e-05	0.138	CAGTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	10	20	-	13.6122	2.12e-05	0.138	CAGTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	10	20	-	13.6122	2.12e-05	0.138	CAGTGACTCAC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	31	41	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	31	41	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	31	41	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	31	41	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	65	75	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	65	75	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	79	89	-	13.6122	2.12e-05	0.138	CAGTGACTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	84	94	-	13.6122	2.12e-05	0.138	CTGTGACTCAG
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	34	45	-	12.6988	2.12e-05	1	AAATGCAAATTC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	38	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	38	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	46	56	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	46	56	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	69	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	70	80	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	70	80	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	70	80	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	77	87	+	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	82	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	82	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	82	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	82	-	13.2545	2.12e-05	0.0419	GTGCTTCCGGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	29	43	+	12.6897	2.12e-05	0.00699	TGCCCTCCCCCGCGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	29	43	+	12.6897	2.12e-05	0.00699	TGCCCTCCCCCGCGT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	29	43	+	12.6897	2.12e-05	0.00699	TGCCCTCCCCCGCGT
SP2	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	61	75	+	12.6897	2.12e-05	0.00699	GACCCGCCCTTCCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	74	88	+	12.6897	2.12e-05	0.00699	GCTCCTCCCACTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	74	88	+	12.6897	2.12e-05	0.00699	GCTCCTCCCACTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	74	88	+	12.6897	2.12e-05	0.00699	GCTCCTCCCACTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	74	88	+	12.6897	2.12e-05	0.00699	GCTCCTCCCACTCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	21	35	-	12.6897	2.12e-05	0.00699	GACCCGCCCTTCCGG
SP2	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	40	54	-	12.6897	2.12e-05	0.00699	GACCCGCCCTTCCGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	57	71	-	12.6897	2.12e-05	0.00699	GCTCCACCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	57	71	-	12.6897	2.12e-05	0.00699	GCTCCACCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	57	71	-	12.6897	2.12e-05	0.00699	GCTCCACCCCGGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	57	71	-	12.6897	2.12e-05	0.00699	GCTCCACCCCGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	61	75	-	12.6897	2.12e-05	0.00699	ACACCGCCCCTCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	61	75	-	12.6897	2.12e-05	0.00699	ACACCGCCCCTCCCG
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	94	108	+	8.60674	2.12e-05	0.175	GCCAGCCTGGGTGTC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	94	108	+	8.60674	2.12e-05	0.175	GCCAGCCTGGGTGTC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	94	108	+	8.60674	2.12e-05	0.175	GCCAGCCTGGGTGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	19	33	-	9.86207	2.12e-05	0.0302	CCCCGCCCCCGGACG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	19	33	-	9.86207	2.12e-05	0.0302	CCCCGCCCCCGGACG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	19	36	+	-9.14474	2.12e-05	0.0319	GGGGGCAGGGGAGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	19	36	+	-9.14474	2.12e-05	0.0319	GGGGGCAGGGGAGGCAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	87	104	-	-9.14474	2.12e-05	0.0319	GGGGGCAGGGGAGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	87	104	-	-9.14474	2.12e-05	0.0319	GGGGGCAGGGGAGGCAGC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	23	32	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	23	32	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	23	32	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	23	32	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	27	36	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	31	40	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	31	40	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	32	41	-	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	47	56	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	43	52	-	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	65	74	+	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	59	68	-	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	79	88	-	13.1837	2.12e-05	0.18	GGGACTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	83	92	-	13.1837	2.12e-05	0.18	GGGACTTCCC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.7021	2.12e-05	0.0571	ACCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.7021	2.12e-05	0.0571	ACCGGAAGGG
JUND	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	16	26	+	13.4468	2.12e-05	0.169	GGTGACTCAGG
JUND	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	33	43	-	13.4468	2.12e-05	0.169	GGTGACTCAGG
JUND	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	33	43	-	13.4468	2.12e-05	0.169	GGTGACTCAGG
JUND	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	72	82	+	13.4468	2.12e-05	0.169	GGTGACTCAGG
JUND	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	89	99	-	13.4468	2.12e-05	0.169	GGTGACTCAGG
Hes1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	10.7413	2.12e-05	0.0721	CCCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	10.7413	2.12e-05	0.0721	CCCACGTGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	10.7413	2.12e-05	0.0721	CCCACGTGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	10.7413	2.12e-05	0.0721	CCCACGTGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	10.7413	2.12e-05	0.0721	CCCACGTGCC
LEF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	42	56	-	11.4516	2.12e-05	1	GAAGGTCAAAGGAAG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	51	64	+	7.09091	2.12e-05	0.128	TAAATAAGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	51	64	+	7.09091	2.12e-05	0.128	TAAATAAGGAAGTC
NR3C2	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	-	9.06383	2.12e-05	0.952	GTGAACATCATGTACAG
CEBPA	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	41	51	+	13.2449	2.12e-05	0.672	GTTGCACCACC
CEBPA	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	64	74	-	13.2449	2.12e-05	0.672	GTTGCACCACC
EGR2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	36	46	-	11.9483	2.12e-05	0.0649	CGGCCCACGCT
EGR2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	69	79	+	11.9483	2.12e-05	0.0649	CGGCCCACGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	-	12.7869	2.13e-05	0.0554	GGCCGCGGGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	-	12.7869	2.13e-05	0.0554	TCCCGTCAGGGGA
GATA1::TAL1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	40	57	+	13	2.13e-05	0.915	TTTATCCGGAAGAAGCAG
MEF2B	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	50	61	+	10.4727	2.13e-05	0.465	GCTATAAATACT
MEF2B	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	54	65	-	10.4727	2.13e-05	0.465	GCTATAAATACT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	26	43	+	-9.15789	2.13e-05	0.0319	GAAGGAAAGGCGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	96	113	-	-9.15789	2.13e-05	0.0319	GGATGGCAGGCCGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	96	113	-	-9.15789	2.13e-05	0.0319	GGATGGCAGGCCGGCAGG
Hmx1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	15	31	-	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	15	31	-	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	15	31	-	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	57	73	+	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	57	73	+	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	57	73	+	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	57	73	+	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	42	58	-	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
Hmx1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	84	100	+	12.7683	2.13e-05	1	AGGGGCACTTAACGGTG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	24	38	-	13.0192	2.13e-05	0.0969	GGGCGGACCAATCGC
ETV2	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	7	17	+	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	14	24	+	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	17	27	+	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	59	69	+	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	76	86	+	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	39	-	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	56	-	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	66	-	12.9836	2.13e-05	0.131	AACAGGAAGTG
ETV2	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	98	-	12.9836	2.13e-05	0.131	AACAGGAAGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	33	51	+	11.2623	2.13e-05	0.083	CCGCCCCCAGGCGGAGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	33	51	+	11.2623	2.13e-05	0.083	CCGCCCCCAGGCGGAGCCG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	33	51	+	11.2623	2.13e-05	0.083	CCGCCCCCAGGCGGAGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	33	51	+	11.2623	2.13e-05	0.083	CCGCCCCCAGGCGGAGCCG
Foxd3	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	7	18	-	12.9565	2.13e-05	1	GATTATTTTTTC
Foxd3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	62	73	-	12.9565	2.13e-05	1	GATTATTTTTTC
Foxd3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	62	73	-	12.9565	2.13e-05	1	GATTATTTTTTC
ESRRB	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	22	32	-	11.5517	2.13e-05	0.867	CCAAGGTCAGC
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	83	93	+	11.5517	2.13e-05	0.867	CCAAGGTCAGC
ESRRB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	83	93	+	11.5517	2.13e-05	0.867	CCAAGGTCAGC
ESRRB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	83	93	+	11.5517	2.13e-05	0.867	CCAAGGTCAGC
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	83	93	+	11.5517	2.13e-05	0.867	CCAAGGTCAGC
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	17	31	+	11.2459	2.13e-05	0.0371	AACCACACCCCAGTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	22	36	+	11.2459	2.13e-05	0.0371	GGCCCCACCCTGACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	22	36	+	11.2459	2.13e-05	0.0371	GGCCCCACCCTGACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	23	37	-	11.2459	2.13e-05	0.0371	GGCCCCACCCCTCCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	23	37	-	11.2459	2.13e-05	0.0371	GGCCCCACCCCTCCA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	23	37	-	11.2459	2.13e-05	0.0371	GGCCCCACCCCTCCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	23	37	-	11.2459	2.13e-05	0.0371	GGCCCCACCCCTCCA
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	40	54	-	11.2459	2.13e-05	0.0371	AACCACACCCCAGTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	61	75	+	11.2459	2.13e-05	0.0371	AACCACACCCCAGTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	84	98	-	11.2459	2.13e-05	0.0371	AACCACACCCCAGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	30	-	13.0714	2.13e-05	0.173	CACAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	30	-	13.0714	2.13e-05	0.173	CACAGCTGCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	30	-	13.0714	2.13e-05	0.173	CACAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	30	-	13.0714	2.13e-05	0.173	CACAGCTGCC
FOS	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	+	13.6596	2.13e-05	0.169	TCTGAGTCACC
FOS	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	+	13.6596	2.13e-05	0.169	TCTGAGTCACC
ID4	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	12	21	-	13.3443	2.13e-05	0.389	CGCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	49	58	+	13.3443	2.13e-05	0.389	CGCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	49	58	+	13.3443	2.13e-05	0.389	CGCACCTGGC
ID4	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	57	66	-	13.3443	2.13e-05	0.389	CGCACCTGGC
ID4	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	94	103	+	13.3443	2.13e-05	0.389	CGCACCTGGC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	13	27	+	13.1333	2.13e-05	0.758	CTTTGTCAGCAACTC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	26	40	-	13.1333	2.13e-05	0.758	CTTTGTCAGCAACTC
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	17	34	+	11.8293	2.13e-05	0.0873	TCGGTTCTAATTGGCCAG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	25	42	-	11.8293	2.13e-05	0.0873	TCGGTTCTAATTGGCCAG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	25	42	-	11.8293	2.13e-05	0.0873	TCGGTTCTAATTGGCCAG
NFYA	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	73	90	+	11.8293	2.13e-05	0.0873	TCGGTTCTAATTGGCCAG
NFYA	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	81	98	-	11.8293	2.13e-05	0.0873	TCGGTTCTAATTGGCCAG
SP3	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	56	66	+	12.7317	2.13e-05	0.0131	AACCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	49	59	-	12.7317	2.13e-05	0.0131	AACCCGCCCCC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	67	78	+	11.8689	2.13e-05	0.076	CAGGCGGAAGTG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	15	+	8.59551	2.13e-05	0.175	CGCCCCCGGGGTGTC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	8	22	-	8.59551	2.13e-05	0.175	CGCCCCCGGGGTGTC
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	8	22	-	8.59551	2.13e-05	0.175	CGCCCCCGGGGTGTC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	43	57	-	8.59551	2.13e-05	0.175	CCGCCCCTGGGGTGC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	43	57	-	8.59551	2.13e-05	0.175	CCGCCCCTGGGGTGC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	26	42	-	7.83636	2.13e-05	0.0172	CACACGCCGCCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	62	75	+	11.6379	2.13e-05	0.0228	AGTTCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	62	75	+	11.6379	2.13e-05	0.0228	AGTTCCGCCCACCT
SREBF1	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	2	11	-	13.5854	2.13e-05	0.472	CTCACCTCAT
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	-	11.9455	2.13e-05	0.121	GCTTACGTCACA
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	-	11.9455	2.13e-05	0.121	GCTTACGTCACA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	4	17	+	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	4	17	+	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	4	17	+	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	4	17	+	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	57	70	+	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	45	58	-	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
PLAG1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	98	111	-	9	2.13e-05	0.0605	GGGGCCAAGTGTGG
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	29	43	-	11.459	2.13e-05	0.309	GTGAGTCAGGACCTT
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	30	44	-	11.459	2.13e-05	0.309	GTGAGTCAGGACCTT
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	71	85	+	11.459	2.13e-05	0.309	GTGAGTCAGGACCTT
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	72	86	+	11.459	2.13e-05	0.309	GTGAGTCAGGACCTT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	60	70	-	13.2364	2.13e-05	0.0419	CCGCTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	60	70	-	13.2364	2.13e-05	0.0419	CCGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	83	93	-	13.2364	2.13e-05	0.0419	CCGCTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	83	93	-	13.2364	2.13e-05	0.0419	CCGCTTCCTGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	95	114	+	7.37615	2.13e-05	0.0468	CCCCAAACCACAAGTACAAT
RFX4	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	+	12.197	2.13e-05	0.144	CATTGCCCGGGCAACC
RFX4	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	-	12.197	2.13e-05	0.144	CATTGCCCGGGCAACC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	12.2653	2.13e-05	0.0998	GGCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	12.2653	2.13e-05	0.0998	GGCACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	12.2653	2.13e-05	0.0998	GGCACGTGCC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	12.2653	2.13e-05	0.0998	GGCACGTGCC
Tcf12	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	32	+	13.6531	2.13e-05	0.142	GGCAGCTGCCA
Tcf12	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	31	-	13.6531	2.13e-05	0.142	GGCAGCTGCCA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	45	-	13.6531	2.13e-05	0.142	GGCAGCTGCCA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	104	114	-	13.6531	2.13e-05	0.142	GGCAGCTGCCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	+	12.8033	2.13e-05	0.064	TGCCCTTCCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	+	12.8033	2.13e-05	0.064	TGCCCTTCCGGCG
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	57	+	9.94828	2.13e-05	0.882	GGGCACGCGGAGTCCCG
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	57	+	9.94828	2.13e-05	0.882	GGGCACGCGGAGTCCCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	32	46	+	9.84483	2.13e-05	0.0302	GCCCGCCCACTCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	32	46	+	9.84483	2.13e-05	0.0302	GCCCGCCCACTCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	26	40	-	9.84483	2.13e-05	0.0302	GCCCGCCCACTCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	26	40	-	9.84483	2.13e-05	0.0302	GCCCGCCCACTCCTC
EGR3	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	75	89	+	9.84483	2.13e-05	0.0302	GCCCGCCCACTCCTC
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	-	13.2364	2.14e-05	0.063	CGCCTCAGGGA
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	+	13.2364	2.14e-05	0.063	CGCCTCAGGGA
POU2F2	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	10	22	+	13	2.14e-05	0.947	CTATTTTGCATAC
SP8	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	15	+	12.7105	2.14e-05	0.0194	CCCCCACCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	100	111	-	12.7105	2.14e-05	0.0194	CCCCCACCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	100	111	-	12.7105	2.14e-05	0.0194	CCCCCACCCACT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	-	13.6	2.14e-05	0.144	GCTGAGTCATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	+	13.6	2.14e-05	0.144	GCTGAGTCATG
MLXIPL	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	13.3485	2.14e-05	0.171	ATCACGTGAG
MLXIPL	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	13.3485	2.14e-05	0.171	ATCACGTGAG
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	13.3485	2.14e-05	0.171	GTCACGTGCC
MLXIPL	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	13.3485	2.14e-05	0.171	GTCACGTGCC
RXRB	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	41	-	5.01818	2.14e-05	0.387	GGGGTCAGAAGTCG
NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	45	55	+	10.7959	2.14e-05	0.191	TGTGACTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	45	55	+	10.7959	2.14e-05	0.191	TGTGACTCATG
NFKB2	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	39	51	-	11.4848	2.14e-05	0.225	TGGGAAAATCCCT
NFKB2	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	64	76	+	11.4848	2.14e-05	0.225	TGGGAAAATCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	2	12	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	2	12	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	2	12	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	23	33	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	23	33	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	23	33	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	23	33	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	28	38	+	13.1346	2.14e-05	0.00807	ACTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	37	47	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	31	41	-	13.1346	2.14e-05	0.00807	ACTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	38	48	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	38	48	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	38	48	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	38	48	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	50	60	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	40	50	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	40	50	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	51	61	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	51	61	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	54	64	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	74	84	+	13.1346	2.14e-05	0.00807	ACTCCGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	77	87	-	13.1346	2.14e-05	0.00807	ACTCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	91	101	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	103	113	+	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	96	106	-	13.1346	2.14e-05	0.00807	GGCCCGCCCCG
MTF1	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	68	81	+	9.42683	2.14e-05	0.5	TCTGCACTCGTTGC
Spz1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	31	41	-	12.8182	2.14e-05	0.595	AGGGGTTCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	31	41	-	12.8182	2.14e-05	0.595	AGGGGTTCAGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	10	30	-	11.8163	2.14e-05	0.0101	GGTGGCTGAGGGGGAGTAGGT
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	67	87	-	11.8163	2.14e-05	0.0101	GGGGAAGGAGCGAGCGAGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	78	98	-	11.8163	2.14e-05	0.0101	GGAGGGAGGCGGGGCGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	81	101	-	11.8163	2.14e-05	0.0101	GGGGCAGAGAAAGGGGGGTGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	14	34	+	11.8163	2.14e-05	0.0101	AGTGGAGGAGGGGTTTGAGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	14	34	+	11.8163	2.14e-05	0.0101	GGGGCAGAGAAAGGGGGGTGC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	28	48	+	11.8163	2.14e-05	0.0101	GGGGAAGGAGCGAGCGAGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	71	91	+	11.8163	2.14e-05	0.0101	AGAGGTGGGAGGAAGAGAAAC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	31	43	+	6.53061	2.14e-05	0.233	GGGGGGTTCCCAT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	31	43	+	6.53061	2.14e-05	0.233	GGGGGGTTCCCAT
CREB3	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	20	33	-	12.2	2.14e-05	0.206	GTGTGACGTCACCT
CREB3	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	82	95	+	12.2	2.14e-05	0.206	GTGTGACGTCACCT
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	22	34	-	13.2449	2.14e-05	0.367	AAAAGGTCACGGA
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	74	86	+	13.2449	2.14e-05	0.367	AAAAGGTCACGGA
EGR1	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	33	+	12.5385	2.14e-05	0.0125	ACCACGCCCACGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	62	75	-	12.5385	2.14e-05	0.0125	CCGTCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	62	75	-	12.5385	2.14e-05	0.0125	CCGTCGCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	92	105	-	12.5385	2.14e-05	0.0125	CCGTCGCCGCCGCC
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	15	30	+	2.61224	2.14e-05	0.877	GAGGTCAGAGGGCCGC
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	15	30	+	2.61224	2.14e-05	0.877	GAGGTCAGAGGGCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	51	65	+	12.6724	2.14e-05	0.00705	TGCCCGCCCTCGCAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	51	65	+	12.6724	2.14e-05	0.00705	TGCCCGCCCTCGCAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	51	65	+	12.6724	2.14e-05	0.00705	TGCCCGCCCTCGCAG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	4	13	+	12.5963	2.14e-05	0.0388	GCACCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	32	41	-	12.5963	2.14e-05	0.0388	GCACCCCCAC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	12.9362	2.14e-05	0.0896	GCCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.9362	2.14e-05	0.0896	GCCGGAAGCG
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	+	13.3846	2.14e-05	0.214	ATCACGTGCG
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	-	13.3846	2.14e-05	0.214	ATCACGTGCG
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	37	48	+	12.9138	2.14e-05	0.365	ACGCCCCCCGCA
NFYA	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	43	60	-	11.8171	2.14e-05	0.0873	GAAGATATGATTGGCTCA
MEF2A	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	47	58	+	11.9032	2.14e-05	0.805	GTTATAAATAGT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	30	50	+	11.6452	2.14e-05	0.143	TTTTGCTTTCACTTTAATAGA
KLF16	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	92	102	+	12.7069	2.14e-05	0.0127	GCCAGGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	13	23	-	12.7069	2.14e-05	0.0127	GCCAGGCCCCC
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	98	112	+	10.5263	2.14e-05	0.168	TCCATGAGGCAGCGC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	1	15	-	10.9571	2.14e-05	0.0989	CCCCACCCGGCGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	28	42	-	10.9571	2.14e-05	0.0989	CACCCCCCACCGCCC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	56	70	-	10.9571	2.14e-05	0.0989	GCCCACCCCCTGCTC
RUNX1	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	9	19	+	12.6897	2.14e-05	0.215	GCTTGTGGCTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	41	51	+	12.6897	2.14e-05	0.215	GCCTGTGGTTC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	41	51	+	12.6897	2.14e-05	0.215	GCCTGTGGTTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	96	106	-	12.6897	2.14e-05	0.215	GCTTGTGGCTT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	96	106	-	12.6897	2.14e-05	0.215	GCTTGTGGCTT
SP4	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	34	50	+	7.81818	2.14e-05	0.0173	CGGGCCCCGCCCTCGGA
SP4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	39	55	+	7.81818	2.14e-05	0.0173	CCCGCTCCGCCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	44	60	-	7.81818	2.14e-05	0.0173	ATGGACACGCCCAGTGG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	+	9.3	2.14e-05	0.137	GGTTACCGTGACAATG
Hoxa9	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	74	84	+	12.9211	2.14e-05	1	CTCATCAATCT
Hoxa9	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	103	113	+	12.9211	2.14e-05	1	CTCATCAATCT
Hoxa9	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	2	12	-	12.9211	2.14e-05	1	CTCATCAATCT
SP3	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	36	46	+	12.6911	2.14e-05	0.0132	CCCACACCCAG
PAX5	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	2	20	-	12.5	2.14e-05	0.137	ATCGCCAGCCAACCACGAC
PAX5	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	70	88	+	12.5	2.14e-05	0.137	GAGCCCAGCCGAGCCGAGC
Stat4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	5	18	+	13.2241	2.14e-05	0.194	TTGCCTGGAAACGG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	43	62	+	7.3578	2.15e-05	0.0468	CCGCCCACCTCCCGCCCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	43	62	+	7.3578	2.15e-05	0.0468	CCGCCCACCTCCCGCCCCGC
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	53	66	-	13.0606	2.15e-05	0.0339	AGTGCCCGGGCCTC
TAL1::TCF3	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	86	97	+	13.0899	2.15e-05	0.99	AGAACAGCTGCT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	2	16	-	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	2	16	-	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	2	16	-	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	2	16	-	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	56	70	+	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	56	70	+	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	56	70	+	13	2.15e-05	0.0969	AGCTCACCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	56	70	+	13	2.15e-05	0.0969	AGCTCACCCAATCAG
SPIC	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	18	31	+	12.6761	2.15e-05	0.182	GAAAACAGGAAGCT
SPIC	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	27	40	+	12.6761	2.15e-05	0.182	ATAATGGGGAGGTA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	72	85	-	12.6761	2.15e-05	0.182	GAAAACAGGAAGCT
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	-	12.8545	2.15e-05	0.0893	CGCCCGCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	-	12.8545	2.15e-05	0.0893	CGCCCGCGGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	-	12.8545	2.15e-05	0.0893	CGCCCGCGGGGA
ERF	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	12.9	2.15e-05	0.0792	ACCGGAAGCT
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	12.9	2.15e-05	0.0792	ACCGGATATG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	12.9	2.15e-05	0.0792	ACCGGATATG
ERF	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	12.9	2.15e-05	0.0792	ACCGGAAGCT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	12.9	2.15e-05	0.0792	ACCGGAAGCT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	12.9	2.15e-05	0.0792	ACCGGAAGCT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	12.9	2.15e-05	0.0792	ACCGGAAGCT
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	12.9	2.15e-05	0.0792	ACCGGAAGCT
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	18	35	-	9.61224	2.15e-05	0.863	GGTGTGCTGGGACATGTA
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	18	35	-	9.61224	2.15e-05	0.863	GGTGTGCTGGGACATGTA
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	82	98	-	6.90164	2.15e-05	0.563	GGGTCATCAGAAGCACA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	26	39	+	11.6207	2.15e-05	0.0228	GGATCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	31	44	-	11.6207	2.15e-05	0.0228	TGCCCCACCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	31	44	-	11.6207	2.15e-05	0.0228	TGCCCCACCCACCT
KLF14	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	83	96	-	11.6207	2.15e-05	0.0228	GGCCCCGCCCCACA
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	54	65	+	7.37931	2.15e-05	0.189	CGCCACGCGCCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	87	98	+	7.37931	2.15e-05	0.189	CGCCCCGTGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	87	98	+	7.37931	2.15e-05	0.189	CGCCCCGTGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	87	98	+	7.37931	2.15e-05	0.189	CGCCCCGTGCCG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	79	92	+	8.80612	2.15e-05	0.365	TGTCCCCGGGCCAA
EGR3	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	17	31	-	9.82759	2.15e-05	0.0302	CGACACCCCCGCGGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	33	48	-	12.3091	2.15e-05	0.0374	CCCTGCCCCCCCACCT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	67	82	+	12.3091	2.15e-05	0.0374	CAACCCCCCCGCCATC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	76	90	-	11.8857	2.15e-05	0.0969	GAAGGGAAGAGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	78	92	-	11.8857	2.15e-05	0.0969	GAGGGGCGGGGGTGA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	78	92	-	11.8857	2.15e-05	0.0969	GAGGGGCGGGGGTGA
ELK4	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	47	57	+	13.2182	2.15e-05	0.0419	GCACTTCCTGG
ELK4	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	58	68	-	13.2182	2.15e-05	0.0419	GCACTTCCTGG
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	50	59	-	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	50	59	-	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	50	59	-	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	99	108	-	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	99	108	-	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	11	+	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	62	71	+	13.4286	2.15e-05	0.011	TCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	62	71	+	13.4286	2.15e-05	0.011	TCCACGCCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	59	70	+	12.8788	2.15e-05	0.109	CGGCGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	59	70	+	12.8788	2.15e-05	0.109	CGGCGTCCCCGC
Tcf7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	25	36	+	11.7258	2.15e-05	1	TGACATCAAAGT
Tcf7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	25	36	+	11.7258	2.15e-05	1	TGACATCAAAGT
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	47	57	-	11.5172	2.15e-05	0.867	TGAAGGTCAGA
SCRT2	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	15	27	-	10.3115	2.15e-05	0.673	TTGCAACAGCTGA
SCRT2	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	88	100	+	10.3115	2.15e-05	0.673	TTGCAACAGCTGA
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	101	111	+	13.1475	2.15e-05	0.042	ACGGAAGTGGC
RREB1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	16	35	-	7.34862	2.15e-05	0.0468	CCCACCCCCACCCCCGCTCA
RREB1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	95	114	-	7.34862	2.15e-05	0.0468	CCCCTGACCAACCGCCGCCG
RREB1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	1	20	+	7.34862	2.15e-05	0.0468	CCCCTGACCAACCGCCGCCG
RREB1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	80	99	+	7.34862	2.15e-05	0.0468	CCCACCCCCACCCCCGCTCA
KLF13	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	11	28	-	8.39655	2.15e-05	0.162	AAGCCACGCCTTTTTCTC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	+	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	-	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	-	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	+	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	+	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	+	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	-	12.7541	2.15e-05	0.0554	GGCCTCCGGGGCG
ZBTB18	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	19	31	-	12.4286	2.15e-05	0.729	TAAACAGATGTGT
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	84	96	+	12.4286	2.15e-05	0.729	TAAACAGATGTGT
NFIA	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	81	90	+	12.8889	2.15e-05	1	CGTGCCAAGC
BATF3	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	79	92	+	5.30303	2.15e-05	0.116	TGATGACGTAAAGG
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	23	36	-	5.30303	2.15e-05	0.116	TGATGACGTAAAGG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	23	36	-	5.30303	2.15e-05	0.116	TGATGACGTAAAGG
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	18	34	+	12.1224	2.15e-05	0.338	AGGTGAAGGGGCGGAGA
E2F7	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	52	65	-	0.803279	2.15e-05	1	CTTTCCCACCAGTT
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	10	20	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	10	20	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	13	23	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	23	33	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	32	42	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	32	42	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	34	44	+	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	82	92	-	12.4909	2.15e-05	0.0111	ACGCGCGCGCA
MSC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	+	12.8659	2.15e-05	0.569	AACAGCTGCC
MSC	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	-	12.8659	2.15e-05	0.569	AACAGCTGCC
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	40	57	-	8.88991	2.16e-05	0.53	CGAAAGGGAAAGGAGGTG
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	74	91	-	8.88991	2.16e-05	0.53	CGAAAGGGAAAGGAGGTG
Myog	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	34	44	+	13.6531	2.16e-05	0.108	GGCAGCTGGGT
Myog	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	99	+	13.6531	2.16e-05	0.108	AGCAGCTGGGA
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	112	+	13.6531	2.16e-05	0.108	AGCAGCTGGGA
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	112	+	13.6531	2.16e-05	0.108	AGCAGCTGGGA
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	16	30	+	12.1364	2.16e-05	0.232	CACACTGAGTCAGCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	85	99	-	12.1364	2.16e-05	0.232	CACACTGAGTCAGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	85	99	-	12.1364	2.16e-05	0.232	CACACTGAGTCAGCG
IRF8	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	22	35	+	2.96364	2.16e-05	0.51	AGGAAACCGGAAGT
IRF8	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	80	93	-	2.96364	2.16e-05	0.51	AGGAAACCGGAAGT
E2F8	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	48	59	+	7.84146	2.16e-05	0.631	TTTCCGGCGGAA
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	56	67	-	7.84146	2.16e-05	0.631	TTTCCGGCGGAA
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	56	67	-	7.84146	2.16e-05	0.631	TTTCCGGCGGAA
CREB3	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	62	75	-	12.1857	2.16e-05	0.206	TGGCGACGTCACTG
CREB3	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	40	53	+	12.1857	2.16e-05	0.206	TGGCGACGTCACTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	62	76	+	11.2131	2.16e-05	0.0375	TGCCCCGCCCCCCTG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	62	76	+	11.2131	2.16e-05	0.0375	TGCCCCGCCCCCCTG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	46	59	-	10.5571	2.16e-05	0.12	TGATGACGCCATCG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	46	59	-	10.5571	2.16e-05	0.12	TGATGACGCCATCG
NR3C1	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	+	8.97959	2.16e-05	0.991	CTGTACATGATGTTCAC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	58	77	-	7.33945	2.16e-05	0.0468	CCACAAAACAAAGCCCTTCT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	58	77	-	7.33945	2.16e-05	0.0468	CCACAAAACAAAGCCCTTCT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	58	77	-	7.33945	2.16e-05	0.0468	CCACAAAACAAAGCCCTTCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	57	76	+	7.33945	2.16e-05	0.0468	ACCCCACCCAGCCAGCCCCT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	+	13.6383	2.16e-05	0.169	GATGACTCATA
MAFK	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	63	77	-	13.1111	2.16e-05	0.758	GAAACTCAGCAAAAA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	9	19	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	9	19	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	9	19	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	20	30	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	20	30	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	21	31	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	21	31	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	21	31	+	13.0962	2.16e-05	0.00809	GTCCCACCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	36	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	29	39	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	33	43	+	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	31	41	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	43	53	+	13.0962	2.16e-05	0.00809	GTCCCACCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	40	50	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	40	50	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	63	73	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	63	73	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
SP1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	76	86	-	13.0962	2.16e-05	0.00809	CCCCCACCCCG
EHF	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	21	32	-	12.5082	2.16e-05	0.107	GTCCAGGAAGTA
EHF	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	53	64	+	12.5082	2.16e-05	0.107	GTCCAGGAAGTA
EHF	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	51	62	-	12.5082	2.16e-05	0.107	GTCCAGGAAGTA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	32	42	-	13.3265	2.16e-05	0.0814	ATCATGTGATT
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	32	42	-	13.3265	2.16e-05	0.0814	ATCATGTGATT
USF2	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	34	+	13.3265	2.16e-05	0.0814	ATCATGTGATT
SP2	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	5	19	+	12.6552	2.16e-05	0.00707	GCTCCTCCCTCCCCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	10	24	+	12.6552	2.16e-05	0.00707	TTTCCGCCCACCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	34	48	+	12.6552	2.16e-05	0.00707	GGCCCGCCTATCTGG
SP2	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	34	48	+	12.6552	2.16e-05	0.00707	GGCCCGCCCTGCCTG
SP2	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	46	60	+	12.6552	2.16e-05	0.00707	GCTCCTCCCTCCCCA
SP2	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	63	77	+	12.6552	2.16e-05	0.00707	GGCCCGCCCTGCCTG
SP2	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	38	52	-	12.6552	2.16e-05	0.00707	GGCCCGCCCTGCCTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	47	61	-	12.6552	2.16e-05	0.00707	CTCCCTCCTCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	47	61	-	12.6552	2.16e-05	0.00707	CTCCCTCCTCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	47	61	-	12.6552	2.16e-05	0.00707	CTCCCTCCTCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	47	61	-	12.6552	2.16e-05	0.00707	CTCCCTCCTCGCCCC
SP2	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	55	69	-	12.6552	2.16e-05	0.00707	GCTCCTCCCTCCCCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	55	69	-	12.6552	2.16e-05	0.00707	GGCCCGCCTATCTGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	63	77	-	12.6552	2.16e-05	0.00707	CCTCCTCCCTCTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	67	81	-	12.6552	2.16e-05	0.00707	GGCCCGCCCTGCCTG
SP2	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	96	110	-	12.6552	2.16e-05	0.00707	GCTCCTCCCTCCCCA
OLIG2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	12.9655	2.16e-05	1	AGCATATGTT
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	12.9655	2.16e-05	1	AGCATATGTT
OLIG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	12.9655	2.16e-05	1	AGCATATGTT
MLX	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	12.6714	2.16e-05	0.205	GTCACGTGCT
MLX	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	12.6714	2.16e-05	0.205	GTCACGTGCT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	13.069	2.16e-05	0.076	GCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	13.069	2.16e-05	0.076	GCCGGAAGTC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	6	20	-	9.81034	2.16e-05	0.0302	CCCCGCCCCCTCCCG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	36	50	+	9.81034	2.16e-05	0.0302	CCCCGCCCCCTCCCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	26	40	-	9.81034	2.16e-05	0.0302	CCCCGCCTCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	69	83	-	9.81034	2.16e-05	0.0302	CCCCGCCTCCGCCGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	34	54	-	11.7959	2.16e-05	0.0101	GGAGGCCGGCGAAGCTGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	46	66	-	11.7959	2.16e-05	0.0101	GAGTCAGTGGGAAGAGGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	52	72	-	11.7959	2.16e-05	0.0101	AAGGGGGAGGGAGGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	63	83	-	11.7959	2.16e-05	0.0101	TGAGGAAGAAGCAAAAGTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	63	83	-	11.7959	2.16e-05	0.0101	TGAGGAAGAAGCAAAAGTGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	71	91	-	11.7959	2.16e-05	0.0101	AGTGGTGAAGATGGGGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	71	91	-	11.7959	2.16e-05	0.0101	TAGGAAGGATGTGGGGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	71	91	-	11.7959	2.16e-05	0.0101	AGTGGTGAAGATGGGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	12	32	+	11.7959	2.16e-05	0.0101	GGAGGTGGAGTTTGAGGGTAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	24	44	+	11.7959	2.16e-05	0.0101	TAGGAAGGATGTGGGGAAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	43	63	+	11.7959	2.16e-05	0.0101	AAGGGGGAGGGAGGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	50	70	+	11.7959	2.16e-05	0.0101	GGAGGCCGGGGAGGAAAGCGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	50	70	+	11.7959	2.16e-05	0.0101	GGAGGCCGGGGAGGAAAGCGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	84	104	+	11.7959	2.16e-05	0.0101	GGGGGAAGGCGTGAGGAAAGT
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	76	-	12	2.16e-05	0.0874	GAAGCGGAAGTA
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	23	33	-	13.7091	2.16e-05	0.14	GCATGAGTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	39	49	+	13.7091	2.16e-05	0.14	GCATGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	44	54	+	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	37	47	-	13.7091	2.16e-05	0.14	GCATGAGTCAG
FOSL2	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	68	78	+	13.7091	2.16e-05	0.14	GCATGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	103	113	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	103	113	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	103	113	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	103	113	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	104	114	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	104	114	-	13.7091	2.16e-05	0.14	CAGTGAGTCAG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	74	85	+	7.44828	2.16e-05	0.247	CGGCGCGTGTCT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	74	85	+	7.44828	2.16e-05	0.247	CGGCGCGTGTCT
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	74	85	+	7.44828	2.16e-05	0.247	CGGCGCGTGTCT
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	74	85	+	7.44828	2.16e-05	0.247	CGGCGCGTGTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	2	15	+	12.5192	2.16e-05	0.0125	GACCCGCCGCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	2	15	+	12.5192	2.16e-05	0.0125	GACCCGCCGCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	2	15	+	12.5192	2.16e-05	0.0125	GACCCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	6	19	+	12.5192	2.16e-05	0.0125	CAGCCGCTCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	6	19	+	12.5192	2.16e-05	0.0125	CAGCCGCTCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	37	50	+	12.5192	2.16e-05	0.0125	GACCCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	37	50	+	12.5192	2.16e-05	0.0125	GACCCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	25	38	-	12.5192	2.16e-05	0.0125	CCTCCGCCCACATT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	25	38	-	12.5192	2.16e-05	0.0125	CCTCCGCCCACATT
ZBTB7A	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	92	103	-	12.8571	2.16e-05	0.217	GCCGCCCACCCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	12	23	+	12.8571	2.16e-05	0.217	GCCGCCCACCCG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	12	23	+	12.8571	2.16e-05	0.217	GCCGCCCACCCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	28	39	+	12.8571	2.16e-05	0.217	CCCGCCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	28	39	+	12.8571	2.16e-05	0.217	CCCGCCCACCCA
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	69	80	+	12.8571	2.16e-05	0.217	CCCGCCCACCCA
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	79	93	-	12.5091	2.17e-05	0.27	AGAAAGGGAAAAGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	60	73	-	9.6383	2.17e-05	0.0959	AGCCTCCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	60	73	-	9.6383	2.17e-05	0.0959	AGCCTCCCGCCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	64	77	-	9.6383	2.17e-05	0.0959	CGCCCCCTGCCGCC
ZIC1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	38	51	+	9.6383	2.17e-05	0.0959	CGCCCCCTGCCGCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	73	+	12.6897	2.17e-05	0.0129	ACCCCTCCCAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	18	36	+	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	18	36	+	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	18	36	+	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	18	36	+	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	26	44	-	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	71	89	+	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
PAX5	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	79	97	-	12.4839	2.17e-05	0.137	GGGCGTAGTCAGGCGTGGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	+	13.5818	2.17e-05	0.144	TATGAGTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	-	13.5818	2.17e-05	0.144	TATGAGTCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	-	13.5818	2.17e-05	0.144	TATGAGTCATG
SPI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	21	34	-	7.01818	2.17e-05	0.13	CGTAAGAGGAAGTC
ELF1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	28	39	+	11.9818	2.17e-05	0.0874	GTGCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.2727	2.17e-05	0.0777	TCCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.2727	2.17e-05	0.0777	TCCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.2727	2.17e-05	0.0777	TCCGGAAGTA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.2727	2.17e-05	0.0777	TCCGGAAGTA
SP4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	26	42	-	7.78182	2.17e-05	0.0174	GGAGCACCGCCCCCTTT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	30	46	-	7.78182	2.17e-05	0.0174	ATTGCCCCACCCACCTT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	30	46	-	7.78182	2.17e-05	0.0174	ATTGCCCCACCCACCTT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	77	90	-	8.95918	2.17e-05	0.0605	GGGGCGCGCAGGGG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	101	114	+	13.0455	2.17e-05	0.0341	GGCCGCGGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	101	114	+	13.0455	2.17e-05	0.0341	GGCCGCGGGGCCTT
RFX5	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	+	9.63793	2.17e-05	0.147	GGTTACCATGGTCGCG
Mafb	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	60	71	-	12.7865	2.17e-05	0.664	TTTCTGCTGACT
Mafb	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	44	55	+	12.7865	2.17e-05	0.664	TTTCTGCTGACT
Klf4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	54	63	-	12.6939	2.17e-05	0.0129	TGGGCGGGTC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	73	+	10.6531	2.17e-05	0.0934	GATGACGTCAAA
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	53	-	10.6531	2.17e-05	0.0934	GATGACGTCAAA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	-	12.6379	2.17e-05	0.0554	CGCCTCCGAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	-	12.6379	2.17e-05	0.0554	CGCCTCCGAGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	-	12.6379	2.17e-05	0.0554	CGCCCGCGAGGCG
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	78	89	+	11.5091	2.17e-05	1	CAAGAAGTCTTC
PROX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	78	89	+	11.5091	2.17e-05	1	CAAGAAGTCTTC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	46	60	+	12.3472	2.17e-05	0.396	TTATAAAAAGCAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	-	13.0545	2.17e-05	0.047	CGCCGCCGGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	-	13.0545	2.17e-05	0.047	CGCCGCCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	-	13.0545	2.17e-05	0.047	CGCCGCCGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	-	13.0545	2.17e-05	0.047	CGCCGCCGGCA
NFYB	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	1	15	-	12.9808	2.17e-05	0.0969	ACGGGGACCAATCGC
FOXP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	18	28	-	13.6667	2.17e-05	0.77	CGGTAAACAGA
FOXP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	18	28	-	13.6667	2.17e-05	0.77	CGGTAAACAGA
SOX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	98	113	+	-6.78788	2.17e-05	1	AAACGATCCCAGTGTC
ETV2	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	16	26	+	12.9508	2.17e-05	0.131	GAGCGGAAATG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	96	111	-	12.2909	2.17e-05	0.0374	ACATGCCCACGCGCGC
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	10.7343	2.17e-05	0.0721	GGCACGTGCG
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	10.7343	2.17e-05	0.0721	GGCACGTGCG
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	10.7343	2.17e-05	0.0721	GGCACGTGCG
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	10.7343	2.17e-05	0.0721	GGCACGTGCG
mix-a	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	5	15	+	12.9841	2.17e-05	1	AATTAATTAAG
mix-a	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	5	15	+	12.9841	2.17e-05	1	AATTAATTAAG
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	12	25	+	12.5345	2.17e-05	0.916	TTTATGGTAATTAT
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	46	59	+	11.3333	2.17e-05	0.253	AGGCCACGTGACCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	46	59	+	11.3333	2.17e-05	0.253	AGGCCACGTGACCC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	46	59	+	11.3333	2.17e-05	0.253	AGGCCACGTGACCC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	46	59	+	11.3333	2.17e-05	0.253	AGGCCACGTGACCC
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	46	59	+	11.3333	2.17e-05	0.253	AGGCCACGTGACCC
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	3	19	-	2.24242	2.17e-05	0.785	AGGCCGCAGAGAGCTCA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	64	78	-	12.4182	2.17e-05	0.0974	GGCCGCCTGCAGAGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	64	78	-	12.4182	2.17e-05	0.0974	GGCCGCCTGCAGAGG
E2F6	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	6	16	-	13.3793	2.17e-05	0.0406	GCGAGGGAAGG
E2F6	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	35	45	-	13.3793	2.17e-05	0.0406	GAGCGGGAGCG
E2F6	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	65	75	-	13.3793	2.17e-05	0.0406	GCGAGGGAAGG
E2F6	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	17	27	+	13.3793	2.17e-05	0.0406	GAGCGGGAGCG
E2F6	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	40	50	+	13.3793	2.17e-05	0.0406	GCGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	99	109	+	13.3793	2.17e-05	0.0406	GCGAGGGAAGG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	+	12.8846	2.17e-05	0.0703	CGCCCGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	+	12.8846	2.17e-05	0.0703	CGCCCGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	+	12.8846	2.17e-05	0.0703	CGCCCGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	+	12.8846	2.17e-05	0.0703	CGCCCGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	+	12.8846	2.17e-05	0.0703	CGCCCGAGGCC
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	86	98	+	12.7869	2.17e-05	0.359	CAGTCTGACGCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	90	102	+	12.7869	2.17e-05	0.359	GTGGCTGGCAGCC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	12.5091	2.17e-05	0.189	GTCACGTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	12.5091	2.17e-05	0.189	GTCACGTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	12.5091	2.17e-05	0.189	GTCACGTGAG
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	12.5091	2.17e-05	0.189	GTCACGTGAG
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	12.5091	2.17e-05	0.189	GTCACGTGAG
NRF1	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	35	45	-	12.4727	2.17e-05	0.0112	CCGCGGGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	70	80	+	12.4727	2.17e-05	0.0112	CCGCGGGCGCA
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	74	85	+	12.6613	2.18e-05	0.281	CCGACCACCAGC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	94	108	+	11.8571	2.18e-05	0.0969	AAGGTGGAGAGGTCG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	17	31	+	9.7931	2.18e-05	0.0302	CGCCTCCCCCGCTCC
Nr1h3::Rxra	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	56	74	+	12.5	2.18e-05	0.671	TGAACTGCATTAACCTAAA
Nr1h3::Rxra	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	41	59	-	12.5	2.18e-05	0.671	TGAACTGCATTAACCTAAA
CTCF	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	15	33	+	11.2131	2.18e-05	0.0832	GCCTCGGCAGGGGGCGGCA
GMEB2	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	50	57	+	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	50	57	-	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	66	73	+	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	66	73	+	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	67	74	+	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	66	73	-	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	66	73	-	12.7429	2.18e-05	1	TTACGTAA
GMEB2	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	67	74	-	12.7429	2.18e-05	1	TTACGTAA
GATA5	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	6	13	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	9	16	-	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	26	33	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	26	33	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	28	35	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	39	46	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	32	39	-	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	40	47	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	42	49	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	65	72	-	10.931	2.18e-05	1	AGATAAGA
GATA5	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	66	73	-	10.931	2.18e-05	1	AGATAAGA
GATA5	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	69	76	-	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	76	83	+	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	74	81	-	10.931	2.18e-05	1	AGATAAGA
GATA5	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	82	89	-	10.931	2.18e-05	1	AGATAAGA
GATA5	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	103	110	+	10.931	2.18e-05	1	AGATAAGA
UNCX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.2124	2.18e-05	1	CCAATTAA
UNCX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.2124	2.18e-05	1	CCAATTAA
UNCX	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.2124	2.18e-05	1	CCAATTAA
UNCX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.2124	2.18e-05	1	CCAATTAA
UNCX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.2124	2.18e-05	1	CCAATTAA
PRRX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.84	2.18e-05	1	CCAATTAA
PRRX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.84	2.18e-05	1	CCAATTAA
PRRX1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.84	2.18e-05	1	CCAATTAA
PRRX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.84	2.18e-05	1	CCAATTAA
PRRX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.84	2.18e-05	1	CCAATTAA
MSX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	12.2545	2.18e-05	1	CCAATTAA
MSX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	12.2545	2.18e-05	1	CCAATTAA
MSX2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	12.2545	2.18e-05	1	CCAATTAA
MSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	12.2545	2.18e-05	1	CCAATTAA
MSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	12.2545	2.18e-05	1	CCAATTAA
Foxj2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	28	+	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	72	+	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	72	+	13.3226	2.18e-05	1	GTAAACAA
Foxj2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	90	+	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	90	+	13.3226	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	28	+	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	72	+	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	72	+	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	90	+	13.7978	2.18e-05	1	GTAAACAA
FOXG1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	90	+	13.7978	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	28	+	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	72	+	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	72	+	14.3636	2.18e-05	1	GTAAACAA
FOXO3	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	90	+	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	90	+	14.3636	2.18e-05	1	GTAAACAA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	6	13	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	9	16	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	26	33	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	26	33	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	28	35	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	39	46	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	32	39	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	40	47	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	42	49	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	65	72	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	66	73	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	76	83	+	14.3273	2.18e-05	1	AGATAAGA
GATA3	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	69	76	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	74	81	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	82	89	-	14.3273	2.18e-05	1	AGATAAGA
GATA3	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	103	110	+	14.3273	2.18e-05	1	AGATAAGA
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	46	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	46	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	68	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	68	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	81	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	81	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	81	+	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	81	+	13.52	2.18e-05	1	GTAAACAT
VSX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	12.1339	2.18e-05	1	CTAATTAG
VSX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	12.1339	2.18e-05	1	CTAATTAG
VSX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	12.1339	2.18e-05	1	CTAATTAG
VSX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	12.1339	2.18e-05	1	CTAATTAG
VSX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.2913	2.18e-05	1	CTAATTAG
VSX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.2913	2.18e-05	1	CTAATTAG
VSX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.2913	2.18e-05	1	CTAATTAG
VSX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.2913	2.18e-05	1	CTAATTAG
VAX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	11.1102	2.18e-05	1	CTAATTAC
VAX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	11.1102	2.18e-05	1	CTAATTAC
VAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	10.8299	2.18e-05	1	CTAATTAC
VAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	10.8299	2.18e-05	1	CTAATTAC
Lhx8	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.3636	2.18e-05	1	CTAATTAG
Lhx8	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.3636	2.18e-05	1	CTAATTAG
Lhx8	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.3636	2.18e-05	1	CTAATTAG
Lhx8	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.3636	2.18e-05	1	CTAATTAG
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	14	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	14	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	32	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	32	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	62	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	57	64	-	13.3226	2.18e-05	1	GTAAACAA
Foxj2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	94	-	13.3226	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	14	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	14	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	32	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	32	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	62	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	57	64	-	13.7978	2.18e-05	1	GTAAACAA
FOXG1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	94	-	13.7978	2.18e-05	1	GTAAACAA
HOXA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	4	11	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	4	11	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	10	17	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	10	17	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	10	17	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	10	17	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	22	29	+	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	76	83	+	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	76	83	-	10.82	2.18e-05	1	CACTAATT
HOXA5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	76	83	-	10.82	2.18e-05	1	CACTAATT
HOXA5	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	86	93	-	10.82	2.18e-05	1	CACTAATT
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	14	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	14	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	32	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	32	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	62	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	57	64	-	14.3636	2.18e-05	1	GTAAACAA
FOXO3	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	94	-	14.3636	2.18e-05	1	GTAAACAA
PDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	-	11.3396	2.18e-05	1	GTAATTAG
PDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	-	11.3396	2.18e-05	1	GTAATTAG
PAX4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	12.6119	2.18e-05	1	CTAATTAG
PAX4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	12.6119	2.18e-05	1	CTAATTAG
PAX4	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	12.6119	2.18e-05	1	CTAATTAG
PAX4	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	12.6119	2.18e-05	1	CTAATTAG
FOXD1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	9	-	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	45	52	-	13.52	2.18e-05	1	GTAAACAT
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	45	52	-	13.52	2.18e-05	1	GTAAACAT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	26	37	+	10.6327	2.18e-05	0.0934	AATGATGTCACT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	26	37	+	10.6327	2.18e-05	0.0934	AATGATGTCACT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	26	37	+	10.6327	2.18e-05	0.0934	AATGATGTCACT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	26	37	+	10.6327	2.18e-05	0.0934	AATGATGTCACT
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	26	37	+	10.6327	2.18e-05	0.0934	AATGATGTCACT
KLF14	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	28	41	+	11.5862	2.18e-05	0.023	GGCCACACCCCCGG
KLF14	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	20	33	-	11.5862	2.18e-05	0.023	TTCCCCGCCCCTTT
KLF14	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	36	49	-	11.5862	2.18e-05	0.023	GGCCCCTCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	45	58	-	11.5862	2.18e-05	0.023	GGACACGCCCAGTG
KLF14	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	66	79	+	11.5862	2.18e-05	0.023	GGCCCCTCCCCCTC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	53	-	12.8727	2.18e-05	0.0548	TCCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	53	-	12.8727	2.18e-05	0.0548	TCCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	53	-	12.8727	2.18e-05	0.0548	TCCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	53	-	12.8727	2.18e-05	0.0548	TCCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	53	-	12.8727	2.18e-05	0.0548	TCCCCCGCGGCG
ELF4	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	35	46	+	11.8033	2.18e-05	0.0771	GACCCGGATGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	80	-	11.8033	2.18e-05	0.0771	GACCCGGATGTG
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	63	-	11.1061	2.18e-05	0.252	AGGGCCAAAGTTTA
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	92	-	11.1061	2.18e-05	0.252	AGGGCCAAAGTTTA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	55	71	+	7.76364	2.18e-05	0.0174	GGGACCCCTCCCCCATC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	55	71	+	7.76364	2.18e-05	0.0174	GGGACCCCTCCCCCATC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	-	12.7213	2.18e-05	0.0554	GGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	-	12.7213	2.18e-05	0.0554	GGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	-	12.7213	2.18e-05	0.0554	GGCCGTGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	-	12.7213	2.18e-05	0.0554	GGCCGTGGGGGCG
SP8	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	25	+	12.6974	2.18e-05	0.0196	ACCCCGCCTCCT
GRHL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.1.0	42	53	-	12.7586	2.18e-05	1	AAAACCAGTTAC
GRHL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.0.0	42	53	-	12.7586	2.18e-05	1	AAAACCAGTTAC
GRHL1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	102	113	-	12.7586	2.18e-05	1	AAAACCAGTTAC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	34	44	-	12.9848	2.18e-05	0.0428	AGACACGCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	34	44	-	12.9848	2.18e-05	0.0428	AGACACGCCCA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	26	36	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	26	36	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	26	36	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	26	36	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	28	38	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	28	38	-	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	40	50	+	13.431	2.18e-05	0.0448	CGGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	49	59	+	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	49	59	+	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	77	87	+	13.431	2.18e-05	0.0448	GAGCGGGAGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	101	111	+	13.431	2.18e-05	0.0448	CGGCGGGAGCT
Rarb(var.2)	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	45	61	-	2.22727	2.18e-05	0.785	CGGCCAATCAGAGGCCA
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	41	57	+	2.22727	2.18e-05	0.785	GGGTCAAACAAAGTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	20	34	+	12.6379	2.18e-05	0.00709	CCCCCACCCCACCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	20	34	+	12.6379	2.18e-05	0.00709	CCCCCACCCCACCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	81	+	12.6379	2.18e-05	0.00709	GCCCCACCCCGCCAT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	19	33	-	12.6379	2.18e-05	0.00709	CTCCCGCTCCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	19	33	-	12.6379	2.18e-05	0.00709	CTCCCGCTCCTCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	19	33	-	12.6379	2.18e-05	0.00709	CTCCCGCTCCTCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	19	33	-	12.6379	2.18e-05	0.00709	CTCCCGCTCCTCCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	34	48	-	12.6379	2.18e-05	0.00709	GCCCCACCCCGCCAT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	49	63	-	12.6379	2.18e-05	0.00709	TGCCCTCCCTCTCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	49	63	-	12.6379	2.18e-05	0.00709	TGCCCTCCCTCTCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	49	63	-	12.6379	2.18e-05	0.00709	TGCCCTCCCTCTCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	49	63	-	12.6379	2.18e-05	0.00709	TGCCCTCCCTCTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	50	64	-	12.6379	2.18e-05	0.00709	CCCCCTCCCTCGCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	50	64	-	12.6379	2.18e-05	0.00709	CCCCCTCCCTCGCCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	50	64	-	12.6379	2.18e-05	0.00709	CCCCCTCCCTCGCCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	50	64	-	12.6379	2.18e-05	0.00709	CCCCCTCCCTCGCCA
SP2	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	59	73	-	12.6379	2.18e-05	0.00709	CGCCCTCCCCCACGG
JUND	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	+	13.2979	2.18e-05	0.169	AGTGACTCAGC
JUND	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	-	13.2979	2.18e-05	0.169	AGTGACTCAGC
JUND	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	-	13.2979	2.18e-05	0.169	AGTGACTCAGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	+	13.2979	2.18e-05	0.169	AGTGACTCAGC
JUND	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	+	13.2979	2.18e-05	0.169	AGTGACTCAGC
HEY2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	12.8966	2.18e-05	0.16	GTCACGTGCT
HEY2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	12.8966	2.18e-05	0.16	GTCACGTGCT
BHLHE23	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	14	25	+	13.3091	2.18e-05	1	GAGCATATGGCA
BHLHE23	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	90	101	-	13.3091	2.18e-05	1	GAGCATATGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	-	12.7541	2.18e-05	0.064	CGCCTCCGAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	-	12.7541	2.18e-05	0.064	CGCCTCCGAGGCA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	89	102	-	8.93878	2.18e-05	0.0605	GTGGGGAAGTGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	89	102	-	8.93878	2.18e-05	0.0605	GTGGGGAAGTGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	89	102	-	8.93878	2.18e-05	0.0605	GTGGGGAAGTGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	89	102	-	8.93878	2.18e-05	0.0605	GTGGGGAAGTGGGG
STAT3	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	64	74	+	13.1633	2.19e-05	0.196	ATGCTGGGAAA
STAT3	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	73	83	-	13.1633	2.19e-05	0.196	ATGCTGGGAAA
STAT3	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	92	102	+	13.1633	2.19e-05	0.196	TTTCTGGGAAC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	26	43	+	-9.30263	2.19e-05	0.0319	GGGAGGCGGGAAAGCAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	47	64	-	-9.30263	2.19e-05	0.0319	GAAGGGGTGGGAGGCAGA
EHF	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	24	-	12.4918	2.19e-05	0.107	AACCCGGAAACG
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	46	57	+	7.32759	2.19e-05	0.189	GGGCACCTGCCG
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	91	105	-	12.4865	2.19e-05	0.142	GTGGGAGAGGGGGGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	91	105	-	12.4865	2.19e-05	0.142	GTGGGAGAGGGGGGA
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	-	12.7759	2.19e-05	0.859	ACCAGCTGTT
Tcf7	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	35	46	+	11.7097	2.19e-05	1	AGGGATCAAAGA
Tcf7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	46	57	+	11.7097	2.19e-05	1	GAAGATCAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	24	44	-	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	24	44	-	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	24	44	-	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	24	44	-	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	24	44	-	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	45	65	-	11.7755	2.19e-05	0.0101	GGAGGGCGGGAGGGCGGGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	50	70	-	11.7755	2.19e-05	0.0101	GGATGAGGGACGGCGAATGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	50	70	-	11.7755	2.19e-05	0.0101	GGATGAGGGACGGCGAATGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	19	39	+	11.7755	2.19e-05	0.0101	GGGGGTGAGGGCGGGGTGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	33	53	+	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	33	53	+	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	33	53	+	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	33	53	+	11.7755	2.19e-05	0.0101	GAGGCAGTGGAGGGCTGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	50	70	+	11.7755	2.19e-05	0.0101	GGAGGGCGGGAGGGCGGGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	70	90	+	11.7755	2.19e-05	0.0101	GGGGGATGGGGCAGTGTGAGA
ZBTB33	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	21	35	-	12.5152	2.19e-05	0.0753	GGCTCGCGGGCGCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	57	71	-	12.5152	2.19e-05	0.0753	CCCTCGCGGGAGCAT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	57	71	-	12.5152	2.19e-05	0.0753	CCCTCGCGGGAGCAT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	80	94	+	12.5152	2.19e-05	0.0753	GGCTCGCGGGCGCTG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	80	94	+	12.5152	2.19e-05	0.0753	GGCTCGCGGGCGCTG
EGR1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	23	+	12.5	2.19e-05	0.0126	GCCCCTCCTCCAGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	11	24	-	12.5	2.19e-05	0.0126	GGACCGCCCACTCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	11	24	-	12.5	2.19e-05	0.0126	GGACCGCCCACTCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	11	24	-	12.5	2.19e-05	0.0126	GGACCGCCCACTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	11	24	-	12.5	2.19e-05	0.0126	GGACCGCCCACTCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	11	24	-	12.5	2.19e-05	0.0126	GGACCGCCCACTCG
EGR1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	13	26	-	12.5	2.19e-05	0.0126	GCCCCTCCTCCAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	102	+	12.5	2.19e-05	0.0126	GCCCCTCCTCCAGC
EGR1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	92	105	-	12.5	2.19e-05	0.0126	GCCCCTCCTCCAGC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	33	43	+	12.6724	2.19e-05	0.215	CTTTGTGGCTT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	43	53	+	12.6724	2.19e-05	0.215	CTTTGTGGCTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	78	92	+	12.0606	2.19e-05	0.243	TGACTTCCGGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	78	92	+	12.0606	2.19e-05	0.243	TGACTTCCGGTTCCC
STAT1::STAT2	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	23	37	-	12.0606	2.19e-05	0.243	TGACTTCCGGTTCCC
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	14	29	+	12.1515	2.19e-05	0.146	TGTTGTCATAGCAATG
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	36	-	7.34483	2.19e-05	0.247	CCCCACGTGCCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	43	54	+	7.34483	2.19e-05	0.247	CCCCACGTGCCC
HSF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	62	74	+	11.6727	2.19e-05	1	TTCTCGAAGTGTC
HSF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	62	74	+	11.6727	2.19e-05	1	TTCTCGAAGTGTC
HSF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	62	74	+	11.6727	2.19e-05	1	TTCTCGAAGTGTC
HSF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	62	74	+	11.6727	2.19e-05	1	TTCTCGAAGTGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	57	71	-	9.77586	2.19e-05	0.0302	CGCCCCCTCCGCACT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	57	71	-	9.77586	2.19e-05	0.0302	CGCCCCCTCCGCACT
Gfi1	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	29	38	-	11.9268	2.19e-05	0.456	CAAATCAGAG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	-	12.6207	2.19e-05	0.0554	CGCCCCCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	-	12.6207	2.19e-05	0.0554	CGCCCCCCCGGCA
JDP2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	22	30	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	29	37	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	34	42	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	69	77	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	85	93	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	85	93	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	85	93	-	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	85	93	-	13.3448	2.19e-05	0.225	GTGACTCAT
NKX3-2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	104	112	+	12.6731	2.19e-05	1	AGCACTTAA
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	104	112	+	12.6731	2.19e-05	1	AGCACTTAA
NKX3-2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	104	112	+	12.6731	2.19e-05	1	AGCACTTAA
NKX3-2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	104	112	+	12.6731	2.19e-05	1	AGCACTTAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	42	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	42	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	42	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	42	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	46	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	46	54	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	46	54	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	73	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	86	+	13.3448	2.19e-05	0.225	GTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	81	89	+	13.3448	2.19e-05	0.225	GTGACTCAT
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	43	54	-	12.7143	2.19e-05	0.146	TTTAAGGGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	43	54	-	12.7143	2.19e-05	0.146	TTTAAGGGGCCG
INSM1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	61	72	+	12.7143	2.19e-05	0.146	TTTAAGGGGCCG
RXRB	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	41	-	4.94545	2.19e-05	0.387	AGGGTCAGAGGCCG
RXRB	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	74	87	+	4.94545	2.19e-05	0.387	AGGGTCAGAGGCCG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	60	73	-	7.56061	2.19e-05	0.379	TGCCCCCCACTGAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	45	+	12.6552	2.19e-05	0.0129	CCCCCTCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	34	44	-	12.6552	2.19e-05	0.0129	CCCCCTCCCAC
CLOCK	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	13.2121	2.19e-05	0.585	GACACGTGGT
CLOCK	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	13.2121	2.19e-05	0.585	GACACGTGGT
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	12.431	2.19e-05	0.188	GTCACGTGTC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	12.431	2.19e-05	0.188	GTCACGTGTC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	12.431	2.19e-05	0.188	GTCACGTGTC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	12.431	2.19e-05	0.188	GTCACGTGTC
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	12.431	2.19e-05	0.188	GTCACGTGTC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	12.431	2.19e-05	0.188	GTCACGTGTC
ELF5	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	43	-	12.5636	2.19e-05	0.111	TCCCGGAAGCG
YY1	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	97	108	-	12.8846	2.19e-05	0.132	CAACATGGCTCA
YY1	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	7	18	+	12.8846	2.19e-05	0.132	CAACATGGCTCA
YY1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	87	98	+	12.8846	2.19e-05	0.132	CAAAATGGCGAG
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	64	74	-	12.6504	2.19e-05	0.0135	GCCCCACCCAT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	23	40	+	-9.31579	2.19e-05	0.0319	GGAGGAGGAGAAGGAGGC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	12.3654	2.19e-05	0.145	GACACGTGAC
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	12.3654	2.19e-05	0.145	GACACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	12.3654	2.19e-05	0.145	GACACGTGAC
BHLHE41	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	12.3654	2.19e-05	0.145	GACACGTGAC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	12.3654	2.19e-05	0.145	GACACGTGAC
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	12.3654	2.19e-05	0.145	GACACGTGAC
ELF3	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	52	64	-	11.2586	2.19e-05	0.125	AAACAGGAAGTTA
ELF3	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	77	89	-	11.2586	2.19e-05	0.125	AAGGAGGAAGTGG
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	76	90	-	12.3506	2.19e-05	0.476	CGTTAAACATTACCT
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	76	90	-	12.3506	2.19e-05	0.476	CGTTAAACATTACCT
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	20	33	+	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	40	53	+	8.92857	2.19e-05	0.0605	GGGGCTAAGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	30	43	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	30	43	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	30	43	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	30	43	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	30	43	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	48	61	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	48	61	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	48	61	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	48	61	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	65	78	+	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	65	78	+	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	76	89	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	82	95	-	8.92857	2.19e-05	0.0605	GGGGGGCGGGGGGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	58	69	-	12.8286	2.19e-05	0.217	GACGCCCACCTC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	58	69	-	12.8286	2.19e-05	0.217	GACGCCCACCTC
NR2C2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	11	25	-	11.8429	2.19e-05	0.0969	CGGGAGGAGGGGTCA
NR2C2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	90	104	+	11.8429	2.19e-05	0.0969	CGGGAGGAGGGGTCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	36	46	+	13.1034	2.19e-05	0.446	AAATCACAGAC
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	36	46	+	13.1034	2.19e-05	0.446	AAATCACAGAC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	+	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	-	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	+	13.1818	2.19e-05	0.063	CGCCGCAGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	+	13.1818	2.19e-05	0.063	CGCCGCAGGCC
NFYB	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	5	19	-	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	21	35	+	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	21	35	+	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	21	35	+	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	21	35	+	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	80	94	-	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
NFYB	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	96	110	+	12.9615	2.19e-05	0.0969	ACGCTGGCCAATCGC
CTCF	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	22	40	+	11.1967	2.19e-05	0.0832	GCGCCCGGAGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	94	112	-	11.1967	2.19e-05	0.0832	ACGCCACTGGGAGGAGGCA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	94	112	-	11.1967	2.19e-05	0.0832	ACGCCACTGGGAGGAGGCA
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	94	112	-	11.1967	2.19e-05	0.0832	ACGCCACTGGGAGGAGGCA
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	94	112	-	11.1967	2.19e-05	0.0832	ACGCCACTGGGAGGAGGCA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	11	26	+	12.2727	2.19e-05	0.0374	TTCCGCCCACCTCCTC
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	3	16	-	6.98182	2.19e-05	0.13	GAGATGGGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	3	16	-	6.98182	2.19e-05	0.13	GAGATGGGGAAGTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	8	16	+	13.6364	2.2e-05	0.267	CCCCACCTG
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	6	13	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	6	13	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	8	15	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	9	16	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	9	16	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	14	21	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	8	15	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	27	34	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	27	34	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	31	38	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	33	40	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	33	40	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	33	40	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	34	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	36	43	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	52	59	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	52	59	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	52	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	52	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	52	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	61	68	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	62	69	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	62	69	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	63	70	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	56	63	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	65	72	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	77	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	79	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	79	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	79	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	79	-	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	91	98	+	13.7541	2.2e-05	0.29	GCACGTGG
Id2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	94	101	-	13.7541	2.2e-05	0.29	GCACGTGG
Mycn	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	17	24	-	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	52	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	43	50	-	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	69	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	72	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	76	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	98	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	104	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	109	+	14.4426	2.2e-05	0.193	ACCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	98	105	-	14.4426	2.2e-05	0.193	ACCACGTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	3	11	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	3	11	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	15	23	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	51	59	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	53	61	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	53	61	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	100	108	-	13.6364	2.2e-05	0.267	CCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	100	108	-	13.6364	2.2e-05	0.267	CCCCACCTG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	1	10	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	1	10	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	1	10	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	1	10	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	1	10	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	12	21	-	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	43	52	+	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	43	52	+	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	43	52	+	12.7927	2.2e-05	0.129	ATCACATGAG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	43	52	+	12.7927	2.2e-05	0.129	ATCACATGAG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	12.9423	2.2e-05	0.0872	ACCGGATATG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	12.9423	2.2e-05	0.0872	ACCGGATATG
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	15	26	+	13.0449	2.2e-05	0.99	CGAACATATGCT
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	15	26	+	13.0449	2.2e-05	0.99	CGAACATATGCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	15	26	+	13.0449	2.2e-05	0.99	CGAACATATGCT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	12.6809	2.2e-05	0.0571	CCCGGAAGTT
ELK1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	12.6809	2.2e-05	0.0571	CCCGGAAGTT
KLF14	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	8	21	+	11.569	2.2e-05	0.023	GGCCCCCCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	43	56	+	11.569	2.2e-05	0.023	GGCCCCCCCCCCCC
KLF14	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	72	-	11.569	2.2e-05	0.023	GGCCCCCCCCCCCC
KLF14	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	107	-	11.569	2.2e-05	0.023	GGCCCCCCCCCCCC
Myod1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	34	+	13.551	2.2e-05	0.12	GGCAGCTGCCAGG
Myod1	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	93	105	-	13.551	2.2e-05	0.12	CACAGCTGCTTCT
Myod1	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	100	112	-	13.551	2.2e-05	0.12	GCCAGCTGCTGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	21	35	-	10.9	2.2e-05	0.0989	GCCTACCTGCCGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	21	35	-	10.9	2.2e-05	0.0989	GCCTACCTGCCGCGC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	44	-	7.31034	2.2e-05	0.189	GGGCACGTGACT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	44	-	7.31034	2.2e-05	0.189	GGGCACGTGACT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	64	-	7.31034	2.2e-05	0.189	GGGCACGTGACT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	64	-	7.31034	2.2e-05	0.189	GGGCACGTGACT
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	13.7273	2.2e-05	1	AGCATATGCC
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	13.7273	2.2e-05	1	AGCATATGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	47	57	-	11.8621	2.2e-05	0.0649	CTGCCCACGCC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.8857	2.2e-05	0.0792	GCCGGAAGCG
RREB1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	17	36	-	7.2844	2.2e-05	0.0468	CCCCACCCCCACCCCCGCTC
RREB1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	79	98	+	7.2844	2.2e-05	0.0468	CCCCACCCCCACCCCCGCTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	38	55	+	-9.32895	2.2e-05	0.0319	GGGAGGAGGGAAGTGAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	38	55	+	-9.32895	2.2e-05	0.0319	GGGAGGAGGGAAGTGAAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	26	43	-	-9.32895	2.2e-05	0.0319	GGAGGAGAGCCTGGAGGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	82	99	-	-9.32895	2.2e-05	0.0319	GGGAGGTGTGCAGGAGGA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	77	91	+	13.0638	2.2e-05	0.311	TGCAGTGACGCCATC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	+	9.22857	2.2e-05	0.14	TGTTGACATAGTAACT
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	-	9.60345	2.2e-05	0.148	CATTGTCACGGTAACC
PKNOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	-	6.36735	2.2e-05	0.965	GGACGGCTGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	-	6.36735	2.2e-05	0.965	GGACGGCTGTCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	15	29	-	-0.385714	2.2e-05	0.656	GAGGCCAAGAGGGCA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	68	78	+	13.5918	2.2e-05	0.14	TTGTGACTCAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	3	13	-	13.5918	2.2e-05	0.14	AAATGAGTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	51	61	-	13.5918	2.2e-05	0.14	TTGTGACTCAG
FOXC2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	1	12	-	12.7624	2.2e-05	1	AATGTAAACATG
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	96	107	+	13.2727	2.2e-05	1	GAGCATATGTCT
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	22	37	+	5.89655	2.2e-05	0.294	TTCCCAGAACGCACTG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	22	37	+	5.89655	2.2e-05	0.294	TTCCCAGAACGCACTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	58	73	+	5.89655	2.2e-05	0.294	TTCCCAGAACGCACTG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	58	73	+	5.89655	2.2e-05	0.294	TTCCCAGAACGCACTG
Ascl2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	-	13.0571	2.2e-05	0.173	CGCAGCTGTT
Ascl2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	+	13.0571	2.2e-05	0.173	CGCAGCTGTT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	13.3654	2.2e-05	0.214	AGCACGTGCG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	13.3654	2.2e-05	0.214	AGCACGTGCG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	13.3654	2.2e-05	0.214	AGCACGTGCG
BHLHE40	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	13.3654	2.2e-05	0.214	AGCACGTGCG
SP8	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	17	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	44	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	44	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	44	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	44	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	44	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	45	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	47	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	47	+	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	41	52	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	41	52	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	41	52	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	41	52	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	41	52	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	69	+	12.6711	2.2e-05	0.0196	ACCCCTCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	69	+	12.6711	2.2e-05	0.0196	ACCCCTCCCCCA
SP8	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	98	109	-	12.6711	2.2e-05	0.0196	TCCCCGCCCCCA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	-	13.2553	2.2e-05	0.169	TGTGACTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	-	13.2553	2.2e-05	0.169	TGTGACTCAGC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	-	13.2553	2.2e-05	0.169	TGTGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	-	13.2553	2.2e-05	0.169	TGTGACTCAGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	38	52	+	9.75862	2.2e-05	0.0302	CCCCACCCACGCCGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	38	52	+	9.75862	2.2e-05	0.0302	CCCCACCCACGCCGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	38	52	+	9.75862	2.2e-05	0.0302	CCCCACCCACGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	38	52	+	9.75862	2.2e-05	0.0302	CCCCACCCACGCCGG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	73	87	+	9.75862	2.2e-05	0.0302	GCCCCCCCCCGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	63	77	-	9.75862	2.2e-05	0.0302	CCCCACCCACGCCGG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	54	68	+	11.1639	2.2e-05	0.0381	AGCGACGCCCTCACC
Klf12	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	47	61	-	11.1639	2.2e-05	0.0381	AGCGACGCCCTCACC
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	73	86	+	13.1897	2.2e-05	0.197	TTTCCAGGAATGGT
FOS	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	+	13.617	2.2e-05	0.169	GCTGAGTCACT
FOS	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	+	13.617	2.2e-05	0.169	GCTGAGTCACT
FOS	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	-	13.617	2.2e-05	0.169	GCTGAGTCACT
FOS	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	+	13.617	2.2e-05	0.169	TGTGAGTCACT
FOS	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	-	13.617	2.2e-05	0.169	GCTGAGTCACT
FOS	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	+	13.617	2.2e-05	0.169	TGTGAGTCACT
FOS	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	-	13.617	2.2e-05	0.169	GCTGAGTCACT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	36	46	+	12.6379	2.2e-05	0.0129	GCCACTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	36	46	+	12.6379	2.2e-05	0.0129	GCCACTCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	36	46	+	12.6379	2.2e-05	0.0129	GCCACTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	36	46	+	12.6379	2.2e-05	0.0129	GCCACTCCTCC
USF2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	33	-	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	112	-	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	13	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	44	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	44	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	59	+	13.3061	2.21e-05	0.0814	CTCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	59	+	13.3061	2.21e-05	0.0814	CTCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	64	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	64	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	77	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	77	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	92	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	97	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	97	+	13.3061	2.21e-05	0.0814	GTCACGTGCCC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	32	45	-	13.3077	2.21e-05	0.167	CTAAAGTGAGTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	62	75	+	13.3077	2.21e-05	0.167	CTAAAGTGAGTCAT
SP3	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	70	80	+	12.6423	2.21e-05	0.0135	GCCACTCCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	35	45	-	12.6423	2.21e-05	0.0135	GCCACTCCCCA
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	51	64	-	11	2.21e-05	0.176	AACCCCACGTGAAG
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	51	64	-	11	2.21e-05	0.176	AACCCCACGTGAAG
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	5	17	-	11.2414	2.21e-05	0.125	ATGGCGGAAGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	5	17	-	11.2414	2.21e-05	0.125	ATGGCGGAAGTGG
ELF3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	98	110	+	11.2414	2.21e-05	0.125	ATGGCGGAAGTGG
MYBL1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	37	48	+	12.3448	2.21e-05	1	AACGTTAACGGG
MYBL1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	67	78	-	12.3448	2.21e-05	1	AACGTTAACGGG
Gabpa	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	2	12	-	13.1311	2.21e-05	0.042	CAGGAAGTGGA
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	16	26	+	13.1311	2.21e-05	0.042	CAGGAAGTGGA
SP2	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	31	45	+	12.6207	2.21e-05	0.00716	CCCCCTCCTCTCTCT
SP2	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	33	47	+	12.6207	2.21e-05	0.00716	GCTCCTCCTTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	45	59	-	12.6207	2.21e-05	0.00716	CGTCCGCCCACCCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	45	59	-	12.6207	2.21e-05	0.00716	CGTCCGCCCACCCCG
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	71	82	-	12.8621	2.21e-05	0.365	GAGACCACCAAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	71	82	-	12.8621	2.21e-05	0.365	GAGACCACCAAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	26	46	+	11.5806	2.21e-05	0.147	GGCTGCTTTCCTTTTCTTGTG
E2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	36	47	-	12.8361	2.21e-05	0.41	TTTGGCGCCGAG
E2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	36	47	-	12.8361	2.21e-05	0.41	TTTGGCGCCGAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	21	31	+	13.6909	2.21e-05	0.141	TCATGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	58	68	-	13.6909	2.21e-05	0.141	TCATGACTCAG
ZIC3	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	31	45	-	10.8857	2.21e-05	0.0989	GGCCACCCGCAGGTC
ZIC3	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	70	84	+	10.8857	2.21e-05	0.0989	GGCCACCCGCAGGTC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	5	23	-	12.4516	2.21e-05	0.137	GGGTTCAGCGGACTGCGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	5	23	-	12.4516	2.21e-05	0.137	GGGTTCAGCGGACTGCGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	13.2787	2.21e-05	0.333	GGCACGTGCC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	13.2787	2.21e-05	0.333	GGCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	13.2787	2.21e-05	0.333	GGCACGTGCC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	13.2787	2.21e-05	0.333	GGCACGTGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	13	26	-	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	13	26	-	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	13	26	-	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	13	26	-	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	46	+	12.4808	2.21e-05	0.0127	GCCCCACCTCCGGT
EGR1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	36	49	+	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	37	50	+	12.4808	2.21e-05	0.0127	GCCCCGCCCTCGGA
EGR1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	66	79	-	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	69	82	-	12.4808	2.21e-05	0.0127	GCCCCACCTCCGGT
EGR1	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	89	102	+	12.4808	2.21e-05	0.0127	ACTACGCCCCCACA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	91	104	+	12.4808	2.21e-05	0.0127	CTTCCACCGCCGCG
ELF4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	98	109	+	11.7869	2.21e-05	0.0772	ATGGCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	17	-	11.7869	2.21e-05	0.0772	ATGGCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	17	-	11.7869	2.21e-05	0.0772	ATGGCGGAAGTG
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	40	54	-	10.4474	2.21e-05	0.169	TGCCTGAGACAGCAG
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	61	75	+	10.4474	2.21e-05	0.169	TGCCTGAGACAGCAG
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	96	111	-	-3.78846	2.21e-05	0.317	CTACCGCGCACGAAGA
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	96	111	-	-3.78846	2.21e-05	0.317	CTACCGCGCACGAAGA
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
HEY1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	13.1455	2.21e-05	0.0969	GCCACGTGAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	14	24	-	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	14	24	-	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	14	24	-	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	33	43	+	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	25	35	-	13.0769	2.21e-05	0.00823	TCCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	35	45	-	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	35	45	-	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	45	55	-	13.0769	2.21e-05	0.00823	TTCCCGCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	75	85	+	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	80	90	+	13.0769	2.21e-05	0.00823	TCCCCGCCTTC
SP1	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	101	111	+	13.0769	2.21e-05	0.00823	CCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	92	102	-	13.0769	2.21e-05	0.00823	TTCCCGCCCTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	29	46	+	-9.35526	2.21e-05	0.0319	GGAGGTGGGGCTGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	29	46	+	-9.35526	2.21e-05	0.0319	GGAGGTGGGGCTGGAAGA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	32	51	-	7.26606	2.21e-05	0.0468	CCACCCTCCGCCCCCACACG
RREB1	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	49	68	-	7.26606	2.21e-05	0.0468	GCACACAACACAACCTACAC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	21	41	-	11.7551	2.21e-05	0.0102	CAGGGAGGGGAGGCAGAGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	21	41	-	11.7551	2.21e-05	0.0102	CAGGGAGGGGAGGCAGAGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	39	59	-	11.7551	2.21e-05	0.0102	AGGGGTGGGGGTGGGGTGGAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	39	59	-	11.7551	2.21e-05	0.0102	AGGGGTGGGGGTGGGGTGGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	3	23	+	11.7551	2.21e-05	0.0102	AGGGGTGGGGGTGGGGTGGAA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	74	94	+	11.7551	2.21e-05	0.0102	CAGGGAGGGGAGGCAGAGAAA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	19	29	+	13.5636	2.21e-05	0.144	TGTGAGTCAGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	-	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	-	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	-	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	-	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	+	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	+	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	+	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	+	13.5636	2.21e-05	0.144	GATGAGTCACC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	-	13.5636	2.21e-05	0.144	GATGAGTCACC
TGIF1	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	+	4.28846	2.21e-05	0.764	TGGCAGCTTTCA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	35	48	-	8.73469	2.21e-05	0.365	TGGCACGAAGCTAG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	+	12.8	2.21e-05	0.0893	CGCCCAAGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	-	12.8	2.21e-05	0.0893	CGCCCAAGGGCG
MAFG	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	91	111	+	11.898	2.21e-05	0.929	TTGCTGCTGAGTCAGTGTGAG
SP8	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	79	90	+	12.6579	2.21e-05	0.0197	GCCACACCCCGC
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	37	52	+	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	37	52	+	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	32	47	-	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	32	47	-	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	32	47	-	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	32	47	-	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	68	83	+	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
ZNF143	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	63	78	-	5.87931	2.21e-05	0.294	CTCCCAGAATCCTCCT
XBP1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	59	72	-	12.1731	2.21e-05	0.446	CCAGCCACGTCAGG
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	24	38	-	11.377	2.21e-05	0.311	GTGACTCAGGAGCGC
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	44	58	-	11.377	2.21e-05	0.311	GTGACTCAGGAGCGC
Lhx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	72	84	-	12.6832	2.21e-05	1	GAATTAATCAACT
Lhx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	72	84	-	12.6832	2.21e-05	1	GAATTAATCAACT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	-	12.6034	2.21e-05	0.0554	CCCCCCGCGGGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	9	22	+	11.5517	2.21e-05	0.0231	AGCCCCGCCTCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	9	22	+	11.5517	2.21e-05	0.0231	AGCCCCGCCTCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	72	85	-	11.5517	2.21e-05	0.0231	AGCCCCGCCTCCCC
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	-	12.6885	2.22e-05	0.0554	GGCCCACGGGGCT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	+	12.6885	2.22e-05	0.0554	GGCCGCGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	-	12.6885	2.22e-05	0.0554	GGCCGCGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	-	12.6885	2.22e-05	0.0554	GGCCGCGGGGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	+	12.6885	2.22e-05	0.0554	GGCCCACGGGGCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	31	41	+	13.1818	2.22e-05	0.0419	CTACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	31	41	+	13.1818	2.22e-05	0.0419	CTACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	31	41	+	13.1818	2.22e-05	0.0419	CTACTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	31	41	+	13.1818	2.22e-05	0.0419	CTACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	39	49	+	13.1818	2.22e-05	0.0419	CCCCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	39	49	+	13.1818	2.22e-05	0.0419	CCCCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	39	49	+	13.1818	2.22e-05	0.0419	CCCCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	39	49	+	13.1818	2.22e-05	0.0419	CCCCTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	43	53	-	13.1818	2.22e-05	0.0419	TCTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	62	72	+	13.1818	2.22e-05	0.0419	TCTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	62	72	+	13.1818	2.22e-05	0.0419	TCTCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	62	72	+	13.1818	2.22e-05	0.0419	TCTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	62	72	+	13.1818	2.22e-05	0.0419	TCTCTTCCGGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	25	35	-	12.6207	2.22e-05	0.0129	ATCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	25	35	-	12.6207	2.22e-05	0.0129	ATCCCGCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	27	41	-	9.74138	2.22e-05	0.0302	ACCCCCCCCCGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	74	88	+	9.74138	2.22e-05	0.0302	ACCCCCCCCCGCCCC
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	23	37	+	12.4685	2.22e-05	0.142	AGAGGTCAGAGTTCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	55	69	-	12.4685	2.22e-05	0.142	AGAGGTCAGAGTTCA
NFYA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	22	39	-	11.7439	2.22e-05	0.0899	GAGGCACTGATTGGTCAC
MEF2C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	46	60	+	12.8136	2.22e-05	0.547	GGGCCCTAAATAGAC
MEF2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	46	60	+	12.8136	2.22e-05	0.547	GGGCCCTAAATAGAC
MEF2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	46	60	+	12.8136	2.22e-05	0.547	GGGCCCTAAATAGAC
Rarb(var.2)	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	30	46	-	2.16667	2.22e-05	0.785	CGGTCAAGAATAGGTCG
Rarb(var.2)	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	69	85	+	2.16667	2.22e-05	0.785	CGGTCAAGAATAGGTCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	76	93	-	-9.36842	2.22e-05	0.0319	GGAAAGAAGGCAAGGAAA
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	60	73	-	9.57447	2.22e-05	0.0959	TGCCCCCCACTGAC
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	60	73	+	9.57447	2.22e-05	0.0959	ACCTCCCTGCTGTG
Tcf7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	101	112	+	11.6935	2.22e-05	1	AAAGATCACAGA
Tcf7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	101	112	+	11.6935	2.22e-05	1	AAAGATCACAGA
RREB1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	18	37	-	7.25688	2.22e-05	0.0468	CCACCCACCCCGCCCTCCCA
RREB1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	78	97	+	7.25688	2.22e-05	0.0468	CCACCCACCCCGCCCTCCCA
E2F6	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	56	66	-	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	80	90	-	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	80	90	-	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	80	90	-	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	80	90	-	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	86	96	-	13.3621	2.22e-05	0.0406	TGGAGGGAAGC
E2F6	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	19	29	+	13.3621	2.22e-05	0.0406	TGGAGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	35	45	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	35	45	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	35	45	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	35	45	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	49	59	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	49	59	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	49	59	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	49	59	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	49	59	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	95	105	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	95	105	+	13.3621	2.22e-05	0.0406	TGGAGGGAGGG
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	86	97	+	12.629	2.22e-05	0.281	GCGACCACAGTC
Klf4	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	4	13	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	19	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	19	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	17	26	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	17	26	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	27	36	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	27	36	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	30	39	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	40	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	53	62	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	54	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	61	70	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	89	98	-	12.6531	2.22e-05	0.0131	AGGGCGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	102	111	+	12.6531	2.22e-05	0.0131	AGGGCGGGGA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	99	114	-	12.2545	2.22e-05	0.0374	CCCCGCCCCCGTGTTC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	99	114	-	12.2545	2.22e-05	0.0374	CCCCGCCCCCGTGTTC
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	12.7931	2.22e-05	1	GACATATGCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	44	54	+	13.6122	2.22e-05	0.11	GGCAGCTGATG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	44	54	+	13.6122	2.22e-05	0.11	GGCAGCTGATG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	71	89	-	12.4677	2.22e-05	0.671	TGACTCTGAGAAACCCTCG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	71	89	-	12.4677	2.22e-05	0.671	TGACTCTGAGAAACCCTCG
HIC2	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	68	76	+	12	2.22e-05	0.266	ATGCCCACG
HIC2	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	80	88	+	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	27	35	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	27	35	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	27	35	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	27	35	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	39	47	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	39	47	-	12	2.22e-05	0.266	ATGCCCACG
HIC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	101	109	-	12	2.22e-05	0.266	ATGCCCACG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	9	19	-	13.0577	2.22e-05	0.00826	GCCCCGCCCAA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	9	19	-	13.0577	2.22e-05	0.00826	GCCCCGCCCAA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	9	19	-	13.0577	2.22e-05	0.00826	GCCCCGCCCAA
SP1	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	106	+	13.0577	2.22e-05	0.00826	GCCCCGCCCAA
ZBTB33	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	79	93	-	12.4848	2.22e-05	0.0753	ACCTCGCGCGCTCTG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	73	87	+	12.4848	2.22e-05	0.0753	CTGTCGCGCGAGCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	73	87	+	12.4848	2.22e-05	0.0753	CTGTCGCGCGAGCTC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	62	72	+	13.0204	2.22e-05	0.112	GCCACATGACT
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	50	64	-	8.51685	2.22e-05	0.178	GGAACCCAGGTTGCA
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	50	64	-	8.51685	2.22e-05	0.178	GGAACCCAGGTTGCA
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr13:33112927..33113041,-__1243.1.0.0	91	107	+	12.0612	2.22e-05	0.338	GGGTAACCGAGAGGTGA
NR2C2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	36	50	+	11.8143	2.22e-05	0.0969	GGGGGGGAAGGGGGA
NR2C2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	65	79	-	11.8143	2.22e-05	0.0969	GGGGGGGAAGGGGGA
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	57	66	+	13.2692	2.22e-05	0.404	TGCACCTGCT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	57	66	+	13.2692	2.22e-05	0.404	TGCACCTGCT
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	77	-	13.2692	2.22e-05	0.404	TGCACCTGCT
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	77	-	13.2692	2.22e-05	0.404	TGCACCTGCT
RUNX1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	5	15	-	12.6379	2.23e-05	0.215	GGCTGTGGTTC
RUNX1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	100	110	+	12.6379	2.23e-05	0.215	GGCTGTGGTTC
E2F3	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	95	112	+	7.41818	2.23e-05	1	GGGAAACGCGCATTTTTT
FOXP2	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	24	34	-	13.6061	2.23e-05	0.77	TGGTAAACAGA
FOXP2	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	29	39	+	13.6061	2.23e-05	0.77	TGGTAAACAGA
FOXP2	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	81	91	+	13.6061	2.23e-05	0.77	TGGTAAACAGA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	-	12.8545	2.23e-05	0.0548	CGCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	-	12.8545	2.23e-05	0.0548	CGCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	-	12.8545	2.23e-05	0.0548	CGCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	-	12.8545	2.23e-05	0.0548	CGCCTGGGGGCG
ZIC3	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	20	34	-	10.8714	2.23e-05	0.0989	TCCTACCCGCCGCGC
Bcl6	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	39	52	-	12.629	2.23e-05	0.316	TTTCCTGGAGTCCC
Bcl6	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	63	76	+	12.629	2.23e-05	0.316	TTTCCTGGAGTCCC
KLF13	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	57	74	-	8.2931	2.23e-05	0.164	CAGCCACGTCCCCTGCGT
KLF13	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	69	86	-	8.2931	2.23e-05	0.164	TTGCCAGGCCCCTGCAGG
Zfx	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	8	21	-	13	2.23e-05	0.0347	GCTAGCCCGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	34	47	+	13	2.23e-05	0.0347	GCTAGCCCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	94	107	+	13	2.23e-05	0.0347	GCTAGCCCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	94	107	+	13	2.23e-05	0.0347	GCTAGCCCGGCCTG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	80	90	-	13.1148	2.23e-05	0.042	CCGGAAGTTCT
SP2	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	96	110	+	12.6034	2.23e-05	0.0072	GCCCCTCCCTAGGCC
SP2	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	5	19	-	12.6034	2.23e-05	0.0072	GCCCCTCCCTAGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	10	24	-	12.6034	2.23e-05	0.0072	CCTCCGCCCCACACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	10	24	-	12.6034	2.23e-05	0.0072	CCTCCGCCCCACACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	10	24	-	12.6034	2.23e-05	0.0072	CCTCCGCCCCACACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	10	24	-	12.6034	2.23e-05	0.0072	CCTCCGCCCCACACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	20	34	-	12.6034	2.23e-05	0.0072	TCCCCACCCCCTGAT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	20	34	-	12.6034	2.23e-05	0.0072	TCCCCACCCCCTGAT
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	52	-	13.0426	2.23e-05	0.311	AATTATGACGTCACA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	52	-	13.0426	2.23e-05	0.311	AATTATGACGTCACA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	63	77	+	13.0426	2.23e-05	0.311	AATTATGACGTCACA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	-	12.8654	2.23e-05	0.0703	AGCCCGAGGCC
Stat4	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	54	67	+	13.1724	2.23e-05	0.197	ATTCTGGGAAACGT
SP3	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	66	76	-	12.6179	2.23e-05	0.0136	ACCCCGCCCCA
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	97	107	-	12.6179	2.23e-05	0.0136	CGCACGCCCAC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	14	28	-	12.4595	2.23e-05	0.142	AGAGGGGAGAGGGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	14	28	-	12.4595	2.23e-05	0.142	AGAGGGGAGAGGGGA
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	12	22	+	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	27	37	-	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	78	88	+	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	78	88	+	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	78	88	+	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	78	88	+	13.1273	2.23e-05	0.0419	GCGTTTCCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	28	45	+	-9.39474	2.23e-05	0.0319	GGAGGGGAGGGGGCAAAT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	50	67	+	-9.39474	2.23e-05	0.0319	GGAGGGCGGGAGGGCGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	48	65	-	-9.39474	2.23e-05	0.0319	GGAGGGCGGGAGGGCGGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	83	100	-	-9.39474	2.23e-05	0.0319	GCCAGGCAGGCAGGCAGG
MNX1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	11.194	2.23e-05	1	GGTAATTAAG
MNX1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	11.194	2.23e-05	1	GGTAATTAAG
HOXC10	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	78	-	12.7636	2.23e-05	1	GTCATTAAAT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	30	41	-	12.6447	2.23e-05	0.0198	TACCCGCCCACT
EGR1	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	1	14	-	12.4615	2.23e-05	0.0127	CTGCCGCCCCTGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	57	70	-	12.4615	2.23e-05	0.0127	CGCCCGCTCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	101	114	+	12.4615	2.23e-05	0.0127	CTGCCGCCCCTGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	101	114	+	12.4615	2.23e-05	0.0127	CTGCCGCCCCTGCG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	68	78	+	12.7455	2.23e-05	0.206	AACCGGAAGCG
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	90	100	+	12.7455	2.23e-05	0.206	AACCGGAAGCG
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	90	100	+	12.7455	2.23e-05	0.206	AACCGGAAGCG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	90	100	+	12.7455	2.23e-05	0.206	AACCGGAAGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	90	100	+	12.7455	2.23e-05	0.206	AACCGGAAGCG
MAX	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	-	13.0962	2.23e-05	0.278	ACCACGTGGA
MAX	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	13.0962	2.23e-05	0.278	CCCACGTGTC
MAX	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	13.0962	2.23e-05	0.278	CCCACGTGTC
MAX	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	-	13.0962	2.23e-05	0.278	ACCACGTGGA
MAX	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	+	13.0962	2.23e-05	0.278	ACCACGTGGA
MAX	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	13.0962	2.23e-05	0.278	CCCACGTGTC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	5	23	+	12.4355	2.23e-05	0.137	CGGCGCGGCGGTGCAGGAA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	33	51	+	12.4355	2.23e-05	0.137	CGGCGCGGCGGTGCAGGAA
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	13.3387	2.23e-05	1	GACATATGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	15	28	+	11.5345	2.23e-05	0.0231	TACCCCGCCCCTGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	15	28	+	11.5345	2.23e-05	0.0231	TACCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	14	27	-	11.5345	2.23e-05	0.0231	CGCCACACCCCCAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	32	45	-	11.5345	2.23e-05	0.0231	GACCACGCGCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	32	45	-	11.5345	2.23e-05	0.0231	GACCACGCGCCCTC
HOXB3	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	10.38	2.23e-05	1	ACTAATTAGA
HOXB3	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.38	2.23e-05	1	GCCAATTAGC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	+	12.6721	2.23e-05	0.0554	GGCCGCCGGGGCT
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	9	18	-	12.5688	2.23e-05	0.0402	GCCCCCCCCA
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	97	106	+	12.5688	2.23e-05	0.0402	GCCCCCCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	28	38	+	12.9545	2.23e-05	0.0428	GACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	28	38	+	12.9545	2.23e-05	0.0428	GACCCCACCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	74	84	+	12.9545	2.23e-05	0.0428	GACCCCACCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	31	41	-	12.9545	2.23e-05	0.0428	GACCCCACCCC
GCM1	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	39	49	+	12.8367	2.23e-05	0.531	CATGCTGGTAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	3	16	+	13.2885	2.23e-05	0.167	AGGAGATGAGTAAG
JUN(var.2)	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	32	45	+	13.2885	2.23e-05	0.167	GAGTTGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	99	112	-	13.2885	2.23e-05	0.167	AGGAGATGAGTAAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	99	112	-	13.2885	2.23e-05	0.167	AGGAGATGAGTAAG
Hes2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	16	28	+	11.9524	2.23e-05	0.433	GGATGACACGTGG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	+	12.5862	2.23e-05	0.0554	GGCCCGAAGGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	-	12.5862	2.23e-05	0.0554	GGCCCGAAGGGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	43	53	-	13.3448	2.23e-05	0.0406	AGGAGGGAGAC
E2F6	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	13	23	+	13.3448	2.23e-05	0.0406	AGGAGGGAGAC
E2F6	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	62	72	+	13.3448	2.23e-05	0.0406	AGGAGGGAGAC
PROX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	69	80	-	11.4364	2.24e-05	1	CAAGACGACTTG
PROX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	69	80	-	11.4364	2.24e-05	1	CAAGACGACTTG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	57	67	-	13.2449	2.24e-05	0.238	CCTTCCTAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	57	67	-	13.2449	2.24e-05	0.238	CCTTCCTAGAA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	42	52	-	13.1346	2.24e-05	0.265	GGGCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	8	18	+	13.1346	2.24e-05	0.265	GGGCTGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	8	18	+	13.1346	2.24e-05	0.265	GGGCTGACTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	20	30	+	13.1346	2.24e-05	0.265	GGGCTGACTCA
SP3	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	3	13	+	12.5854	2.24e-05	0.0136	CCCGCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	68	78	+	12.5854	2.24e-05	0.0136	CCCGCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	77	87	+	12.5854	2.24e-05	0.0136	CCCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	15	25	-	12.5854	2.24e-05	0.0136	CCCGCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	15	25	-	12.5854	2.24e-05	0.0136	CCCGCGCCCCC
Myod1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	61	73	+	13.5306	2.24e-05	0.12	GCCACCTGCCACC
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	42	54	-	13.5306	2.24e-05	0.12	GCCACCTGCCACC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	42	54	-	13.5306	2.24e-05	0.12	GCCACCTGCCACC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	42	54	-	13.5306	2.24e-05	0.12	GCCACCTGCCACC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	42	54	-	13.5306	2.24e-05	0.12	GCCACCTGCCACC
Creb5	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	29	+	11.8364	2.24e-05	0.123	CATGACGTAAGC
Creb5	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	52	+	11.8364	2.24e-05	0.123	CATGACGTAAGC
Creb5	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	74	-	11.8364	2.24e-05	0.123	CATGACGTAAGC
Creb5	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	97	-	11.8364	2.24e-05	0.123	CATGACGTAAGC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	+	10.551	2.24e-05	0.194	GGTGACTCACT
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	68	83	-	7.72131	2.24e-05	0.748	AAGTGCGCTGGGTGCG
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	68	83	-	7.72131	2.24e-05	0.748	AAGTGCGCTGGGTGCG
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	14	28	+	13.2041	2.24e-05	0.715	CATTTATTTACACAG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	6	23	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	6	23	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	6	23	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	6	23	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	42	59	+	-9.40789	2.24e-05	0.0319	GGAGGGAGCGGAGGCTGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	48	65	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	48	65	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	48	65	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	48	65	+	-9.40789	2.24e-05	0.0319	TGGAGGAAGGAGGGCAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	39	59	-	11.7347	2.24e-05	0.0103	GAGGGAAGGGCGGGCGGGCGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	8	28	+	11.7347	2.24e-05	0.0103	GGGGGGAGGAGGAGGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	22	42	+	11.7347	2.24e-05	0.0103	GGAGCAGGGCGGGGAGTTCGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	22	42	+	11.7347	2.24e-05	0.0103	GGAGCAGGGCGGGGAGTTCGG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	56	76	+	11.7347	2.24e-05	0.0103	GAGGGAAGGGCGGGCGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	92	112	+	11.7347	2.24e-05	0.0103	GAATCAGGCTGGAGAGGGGGC
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	5	16	+	12.6837	2.24e-05	0.146	TGGCTGGGGTAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	5	16	+	12.6837	2.24e-05	0.146	TGGCTGGGGTAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	90	101	-	12.6837	2.24e-05	0.146	TGGCTGGGGTAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	90	101	-	12.6837	2.24e-05	0.146	TGGCTGGGGTAG
ESR1	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	94	110	-	4.25758	2.24e-05	0.424	TCGGTCATAGTGAGCTA
PAX9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.0.0	19	35	-	5.16364	2.24e-05	0.463	GGATACGCATCATCACA
PAX9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	19	35	-	5.16364	2.24e-05	0.463	GGATACGCATCATCACA
NHLH1	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	7	16	+	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	99	108	-	12.9138	2.24e-05	0.102	CTCAGCTGCT
ETV6	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	12.9615	2.24e-05	0.0754	AGCGGAAATG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	12.9615	2.24e-05	0.0754	AGCGGAAATG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	+	12.7049	2.24e-05	0.064	TGCCCCTGTGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	7	17	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	7	17	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	7	17	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	7	17	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	83	93	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	93	103	-	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	12	22	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	22	32	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	22	32	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	22	32	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	22	32	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	22	32	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	98	108	+	13.0182	2.24e-05	0.047	CGCCCCAAGCG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	70	81	+	12.803	2.24e-05	0.109	CAGGGTCCCCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	70	81	+	12.803	2.24e-05	0.109	CAGGGTCCCCGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	60	71	-	12.803	2.24e-05	0.109	CCACGTCCCCTG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	86	97	-	12.803	2.24e-05	0.109	GAGGGTCCGCAT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	86	97	-	12.803	2.24e-05	0.109	GAGGGTCCGCAT
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	60	74	+	12.4697	2.24e-05	0.0753	CTCCCGCGAGGGGGC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	60	74	+	12.4697	2.24e-05	0.0753	CTCCCGCGAGGGGGC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	60	74	+	12.4697	2.24e-05	0.0753	CTCCCGCGAGGGGGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	60	74	+	12.4697	2.24e-05	0.0753	CTCCCGCGAGGGGGC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	61	75	+	12.4697	2.24e-05	0.0753	TCCTCGCGCGCCTCC
SP4	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	52	68	-	7.67273	2.24e-05	0.0174	GCAGCTCCGCCTCCTCA
GATA1::TAL1	WILDTYPE__Lincrna.noflip.NA__chr8:130587210..130587324,-__837.1.0.0	80	97	+	12.9091	2.24e-05	0.915	ATAATCAGGCAACTGCAG
GATA1::TAL1	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	96	113	+	12.9091	2.24e-05	0.915	ATAATCAGGCAACTGCAG
GATA1::TAL1	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	2	19	-	12.9091	2.24e-05	0.915	ATAATCAGGCAACTGCAG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	46	60	-	10.8571	2.24e-05	0.0989	GCACCCCTGCAGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	46	60	-	10.8571	2.24e-05	0.0989	GCACCCCTGCAGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	85	99	-	10.8571	2.24e-05	0.0989	GCACCCCTGCAGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	85	99	-	10.8571	2.24e-05	0.0989	GCACCCCTGCAGCGG
GLIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	18	31	+	7.48485	2.24e-05	0.379	GAGCCCCCGCAAGG
GLIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	18	31	+	7.48485	2.24e-05	0.379	GAGCCCCCGCAAGG
NFYA	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	12	29	-	11.7195	2.24e-05	0.0905	GGTGCGCCCATTGGCCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	11	26	-	12.2364	2.24e-05	0.0374	CCCCGCCCCCGGCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	11	26	-	12.2364	2.24e-05	0.0374	CCCCGCCCCCGGCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	11	26	-	12.2364	2.24e-05	0.0374	CCCCGCCCCCGGCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	11	26	-	12.2364	2.24e-05	0.0374	CCCCGCCCCCGGCCTC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	1	11	+	12.4364	2.24e-05	0.0114	GCGGCGGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	7	17	+	12.4364	2.24e-05	0.0114	GCGGCGGCGCC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	12	26	-	12.3636	2.24e-05	0.0974	TGCCTCCCACGGAGA
ZIC4	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	89	103	+	12.3636	2.24e-05	0.0974	TGCCTCCCACGGAGA
Nr2f6(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	38	52	+	-0.471429	2.24e-05	0.656	GAGGGCAGGAGGTCC
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	38	52	+	-0.471429	2.24e-05	0.656	GAGGGCAGGAGGTCC
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	31	45	-	-0.471429	2.24e-05	0.656	GAGGGCAGGAGGTCC
Nr2f6(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	31	45	-	-0.471429	2.24e-05	0.656	GAGGGCAGGAGGTCC
NFYB	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	70	84	-	12.9231	2.24e-05	0.0986	CCGGTGGCCAATCAC
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	41	55	+	12.4505	2.24e-05	0.142	TTGGGGGAGAGTTGA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	60	74	-	12.4505	2.24e-05	0.142	TTGGGGGAGAGTTGA
Creb3l2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	23	+	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	21	29	+	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	19	27	-	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	22	30	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	22	30	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	24	32	-	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	24	32	-	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	40	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	40	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	40	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	40	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	40	-	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	88	96	+	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	88	96	+	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	88	96	+	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	88	96	+	13.382	2.24e-05	0.191	GCCACGTCT
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	104	+	13.382	2.24e-05	0.191	TCCACGTGG
Creb3l2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	100	-	13.382	2.24e-05	0.191	TCCACGTGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	8	18	+	13.3966	2.24e-05	0.0448	TCGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	8	18	+	13.3966	2.24e-05	0.0448	TCGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	8	18	+	13.3966	2.24e-05	0.0448	TCGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	8	18	+	13.3966	2.24e-05	0.0448	TCGCGGGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	8	18	+	13.3966	2.24e-05	0.0448	TCGCGGGAGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	39	49	+	13.3966	2.24e-05	0.0448	CCGCGGGAGAA
ETV4	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	12.7069	2.24e-05	0.0982	CCCGGAAGTA
ETV4	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	12.7069	2.24e-05	0.0982	CCCGGAAGTA
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	18	32	-	12.3117	2.24e-05	0.476	GGTTAAACATTAAGA
RREB1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	93	112	-	7.22018	2.24e-05	0.0468	CCTCAAGACACCCACATACG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.931	2.25e-05	0.0709	TCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	12.931	2.25e-05	0.0709	CCCGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.931	2.25e-05	0.0709	AGCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.931	2.25e-05	0.0709	AGCGGAAGTG
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	1	15	+	10.4079	2.25e-05	0.169	TCCCTGACGCAGCCC
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	100	114	-	10.4079	2.25e-05	0.169	TCCCTGACGCAGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	74	85	+	7.27586	2.25e-05	0.189	CGGCGCGTGTCT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	74	85	+	7.27586	2.25e-05	0.189	CGGCGCGTGTCT
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	74	85	+	7.27586	2.25e-05	0.189	CGGCGCGTGTCT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	74	85	+	7.27586	2.25e-05	0.189	CGGCGCGTGTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	10	24	+	12.5862	2.25e-05	0.00723	AGTCCGCCCCCGACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	10	24	+	12.5862	2.25e-05	0.00723	AGTCCGCCCCCGACC
SP2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	12	26	+	12.5862	2.25e-05	0.00723	CCCCTGCCCCTCTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	13	27	+	12.5862	2.25e-05	0.00723	CCTCCGCCCTTGCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	13	27	+	12.5862	2.25e-05	0.00723	CCTCCGCCCTTGCGC
SP2	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	63	77	+	12.5862	2.25e-05	0.00723	CCCCTGCCCCTCTCC
SP2	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	83	97	+	12.5862	2.25e-05	0.00723	CGCCCGCCTCGCCTC
SP2	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	18	32	-	12.5862	2.25e-05	0.00723	CGCCCGCCTCGCCTC
SP2	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	38	52	-	12.5862	2.25e-05	0.00723	CCCCTGCCCCTCTCC
SP2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	89	103	-	12.5862	2.25e-05	0.00723	CCCCTGCCCCTCTCC
EGR3	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	29	43	+	9.7069	2.25e-05	0.0302	TCCCGCCCCCGGACC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	34	48	+	9.7069	2.25e-05	0.0302	GACCGCCCACGTCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	10	20	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	10	20	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	23	33	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	28	38	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	30	40	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	36	46	-	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	69	79	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	69	79	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	69	79	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	69	79	+	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	75	85	-	13.082	2.25e-05	0.042	CAGGAAGTGAC
Gabpa	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	77	87	-	13.082	2.25e-05	0.042	CAGGAAGTGAC
KLF14	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	20	33	+	11.5172	2.25e-05	0.0231	TGCCCCGCCTCCTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	48	61	+	11.5172	2.25e-05	0.0231	TGCCCCGCCTCCTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	84	97	+	11.5172	2.25e-05	0.0231	TGCCCCGCCTCCTG
KLF14	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	82	95	-	11.5172	2.25e-05	0.0231	TGCCCCGCCTCCTG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	27	38	+	12.6735	2.25e-05	0.146	AGCATGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	27	38	+	12.6735	2.25e-05	0.146	AGCATGGGGGCG
NR3C1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	74	90	-	8.85714	2.25e-05	0.991	GGGGACAGAGTGGACCG
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	+	13.2128	2.25e-05	0.169	GGTGACTCACA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	+	13.2128	2.25e-05	0.169	GGTGACTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	+	13.2128	2.25e-05	0.169	GGTGACTCACA
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	-	13.2128	2.25e-05	0.169	GGTGACTCACA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	50	67	+	-9.43421	2.25e-05	0.0319	AGAAGAAAGGGAGGGGAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	29	46	-	-9.43421	2.25e-05	0.0319	AAAGGGGAGGGAGGAGAG
Znf423	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	37	51	-	8.49438	2.25e-05	0.178	CCCACCCAGGGCTGA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	13	23	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	13	23	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	5	15	-	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	19	29	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	40	50	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	41	51	-	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	53	63	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	53	63	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	64	74	+	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	65	75	-	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	79	89	-	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	90	100	-	12.4182	2.25e-05	0.0114	GCGGGGGCGCG
HMBOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	11	20	+	12.1935	2.25e-05	1	ACTGGTTAAC
HMBOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	11	20	+	12.1935	2.25e-05	1	ACTGGTTAAC
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	33	46	-	8.68367	2.25e-05	0.365	TGGCTGGGTGCCCA
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	69	82	+	8.68367	2.25e-05	0.365	TGGCTGGGTGCCCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	1	15	+	11.1148	2.25e-05	0.0388	TGCGACGCCCAGCTA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	37	51	+	11.1148	2.25e-05	0.0388	TGCGACGCCCAGCTA
ESR2	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	22	36	+	12.5769	2.25e-05	0.426	GGGTCAGACCAGCCC
ELF3	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	70	82	-	11.1897	2.25e-05	0.125	CTGCCGGAAGTTG
ELF3	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	33	45	+	11.1897	2.25e-05	0.125	CTGCCGGAAGTTG
OLIG2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	12.8276	2.25e-05	1	GCCATATGCT
OLIG2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	12.8276	2.25e-05	1	GCCATATGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	+	12.8364	2.25e-05	0.0548	CGCCCCGAGGGA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	38	+	12.8364	2.25e-05	0.0548	TGCCCTCGGCCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	90	+	12.8364	2.25e-05	0.0548	TGCCCTCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	90	+	12.8364	2.25e-05	0.0548	TGCCCTCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	-	12.8364	2.25e-05	0.0548	CGCCCCGAGGGA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	-	12.8364	2.25e-05	0.0548	CGCCCCGAGGGA
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	12	21	-	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	26	35	-	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	26	35	-	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	35	44	-	13.4082	2.25e-05	0.0114	CCCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	51	60	-	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	80	89	-	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	35	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	39	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	44	+	13.4082	2.25e-05	0.0114	CCCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	56	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	67	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	67	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	66	75	+	13.4082	2.25e-05	0.0114	CCCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	76	85	+	13.4082	2.25e-05	0.0114	CCCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	76	85	+	13.4082	2.25e-05	0.0114	CCCCCTCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	89	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	103	+	13.4082	2.25e-05	0.0114	ACCCCTCCCC
Gata1	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	26	36	-	13.2857	2.25e-05	0.822	CTCTTATCTGG
Gata1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	40	50	-	13.2857	2.25e-05	0.822	CTCTTATCTGG
Gata1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	40	50	-	13.2857	2.25e-05	0.822	CTCTTATCTGG
Gata1	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	74	84	-	13.2857	2.25e-05	0.822	CTCTTATCTGG
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	-	13.1273	2.25e-05	0.063	TGCCTGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	+	13.1273	2.25e-05	0.063	TGCCTGCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	+	13.1273	2.25e-05	0.063	TGCCTGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	+	13.1273	2.25e-05	0.063	CGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	+	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	-	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	-	13.1273	2.25e-05	0.063	AGCCCGCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	-	13.1273	2.25e-05	0.063	TGCCTGCGGCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	66	78	+	11.3333	2.25e-05	0.225	CGGGGACCCCCCC
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	66	78	+	11.3333	2.25e-05	0.225	CGGGGACCCCCCC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	66	78	+	11.3333	2.25e-05	0.225	CGGGGACCCCCCC
HES7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	50	61	+	7.25862	2.25e-05	0.189	CAGCACGTGGCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	50	61	+	7.25862	2.25e-05	0.189	CAGCACGTGGCG
HES7	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	54	65	-	7.25862	2.25e-05	0.189	CAGCACGTGGCG
SCRT2	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	66	78	+	10.1803	2.25e-05	0.673	ACCCAACAGGTAT
ETV2	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	37	47	+	12.8361	2.25e-05	0.131	TACAGGAAATA
ETV2	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	68	78	-	12.8361	2.25e-05	0.131	TACAGGAAATA
Esrrg	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	15	24	+	13.2857	2.25e-05	0.702	TGAAGGTCAG
Esrrg	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	23	32	-	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	48	57	-	13.2857	2.25e-05	0.702	TGAAGGTCAG
Esrrg	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	67	76	-	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	71	80	-	13.2857	2.25e-05	0.702	TGAAGGTCAG
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	71	80	-	13.2857	2.25e-05	0.702	TGAAGGTCAG
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	83	92	+	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	83	92	+	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	83	92	+	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	83	92	+	13.2857	2.25e-05	0.702	CCAAGGTCAG
Esrrg	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	91	100	-	13.2857	2.25e-05	0.702	TGAAGGTCAG
SNAI2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	10	18	-	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	62	70	-	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	70	78	-	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	70	78	-	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	72	80	-	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	16	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	16	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	43	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	45	53	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	45	53	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	45	53	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	45	53	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	99	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	99	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	99	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	112	+	12.7209	2.25e-05	0.433	GGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	112	+	12.7209	2.25e-05	0.433	GGCAGGTGG
CREB3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	40	53	-	12.0857	2.25e-05	0.206	CGGCCACGTGACTG
CREB3	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	67	80	-	12.0857	2.25e-05	0.206	TGGCCACGTCGTAG
CREB3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	77	90	-	12.0857	2.25e-05	0.206	CGGCCACGTGACTG
CREB3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	25	38	+	12.0857	2.25e-05	0.206	CGGCCACGTGACTG
CREB3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	62	75	+	12.0857	2.25e-05	0.206	CGGCCACGTGACTG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	60	74	-	10.8429	2.26e-05	0.0989	CGCCCCCTGCTTTGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	96	106	+	13.3793	2.26e-05	0.0448	GCGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	96	106	+	13.3793	2.26e-05	0.0448	GCGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	96	106	+	13.3793	2.26e-05	0.0448	GCGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	96	106	+	13.3793	2.26e-05	0.0448	GCGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	96	106	+	13.3793	2.26e-05	0.0448	GCGCGGGAGCT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	+	12.7818	2.26e-05	0.0893	AGCCCTGGGCCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	10	23	+	12.4423	2.26e-05	0.0129	TTGCCACCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	10	23	+	12.4423	2.26e-05	0.0129	TTGCCACCGCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	31	44	+	12.4423	2.26e-05	0.0129	CCCCATCCCACGCA
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	65	82	-	8.76147	2.26e-05	0.54	TGAAAGTGAAGGTCATGC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	8	17	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	8	17	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	8	17	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	8	17	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	38	47	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	38	47	-	13.0769	2.26e-05	0.439	AAACCACAGA
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	43	52	-	13.0769	2.26e-05	0.439	AAACCACAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	50	67	+	-9.44737	2.26e-05	0.0319	GGAGGCCGGGGAGGAAAG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	50	67	+	-9.44737	2.26e-05	0.0319	GGAGGCCGGGGAGGAAAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	51	68	+	-9.44737	2.26e-05	0.0319	GACAGGGACGCAGGAGGG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	-	10.4694	2.26e-05	0.194	AGTGAGTCACC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.8269	2.26e-05	0.0872	ACCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.8269	2.26e-05	0.0872	ACCGGAAGGG
ERG	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	12.9273	2.26e-05	0.098	ACAGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	12.5957	2.26e-05	0.0571	CCCGGAAGTC
ELK1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	12.5957	2.26e-05	0.0571	CCCGGAAGTC
RXRB	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	29	42	+	4.85455	2.26e-05	0.387	TGGGTGAAAGGGCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	38	48	+	12.6034	2.26e-05	0.0129	AACACTCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	92	102	-	12.6034	2.26e-05	0.0129	AACACTCCCAC
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	30	44	+	11.7857	2.26e-05	0.0969	TGAGGTGGGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	34	48	-	11.7857	2.26e-05	0.0969	TGAGGTGGGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	67	81	+	11.7857	2.26e-05	0.0969	TGAGGTGGGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	71	85	-	11.7857	2.26e-05	0.0969	TGAGGTGGGGGGGCG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	27	40	+	8.84694	2.26e-05	0.0605	GGGGGAAACTGGGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	93	112	-	7.20183	2.26e-05	0.0468	CTCCACACCTCCCGCCCCGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	93	112	-	7.20183	2.26e-05	0.0468	CTCCACACCTCCCGCCCCGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	12	31	+	7.20183	2.26e-05	0.0468	CTCCACACCTCCCGCCCCGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	12	31	+	7.20183	2.26e-05	0.0468	CTCCACACCTCCCGCCCCGA
ATF7	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	41	54	+	10.4286	2.26e-05	0.123	GTTTGACGTCATCA
ATF7	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	61	74	-	10.4286	2.26e-05	0.123	GTTTGACGTCATCA
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	8	22	-	12.4545	2.26e-05	0.0753	CTATCGCGAGAATAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	8	22	-	12.4545	2.26e-05	0.0753	CTATCGCGAGAATAG
NFKB1	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	100	112	-	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	3	15	+	6.32653	2.26e-05	0.233	TGGGAAATCACCA
DUXA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	69	81	-	12.9194	2.26e-05	1	GTAAGCCAATCAG
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	69	81	-	12.9194	2.26e-05	1	GTAAGCCAATCAG
DUXA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	69	81	-	12.9194	2.26e-05	1	GTAAGCCAATCAG
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	69	81	-	12.9194	2.26e-05	1	GTAAGCCAATCAG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	57	67	+	13.3103	2.26e-05	0.0409	CGGCGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	57	67	+	13.3103	2.26e-05	0.0409	CGGCGGGAAGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	98	108	+	13.1091	2.26e-05	0.0421	TGGCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	98	108	+	13.1091	2.26e-05	0.0421	TGGCTTCCGGG
Ar	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	-	9.7931	2.26e-05	0.882	GGGGAGACAATGTTCTT
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	9	20	+	12.7879	2.26e-05	0.109	CCGCCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	9	20	+	12.7879	2.26e-05	0.109	CCGCCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	28	39	-	12.7879	2.26e-05	0.109	CCGCCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	28	39	-	12.7879	2.26e-05	0.109	CCGCCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	28	39	-	12.7879	2.26e-05	0.109	CCGCCTCCGCGG
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	46	59	-	13.1552	2.26e-05	0.197	GTTATAGGAAATAG
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	46	59	-	13.1552	2.26e-05	0.197	GTTATAGGAAATAG
EGR3	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	29	43	-	9.68966	2.26e-05	0.0302	CCCCGCCCACCCTGC
REL	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	67	76	+	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	77	86	+	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	77	86	+	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	77	86	+	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	77	86	+	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	21	30	-	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.0.0	21	30	-	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	21	30	-	12.7273	2.26e-05	0.23	TGGACTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.0	21	30	-	12.7273	2.26e-05	0.23	TGGACTTTCC
Crx	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	30	40	+	12.8966	2.26e-05	1	GAGGGGATTAT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	+	12.569	2.26e-05	0.0554	GGCCCTAGGGGGT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	54	-	11.8	2.26e-05	0.123	TATGACGTCAGG
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	54	-	11.8	2.26e-05	0.123	TATGACGTCAGG
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	54	-	11.8	2.26e-05	0.123	TATGACGTCAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	76	96	-	11.7143	2.26e-05	0.0104	GGGGGGGCGGGGGGGGTGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	90	110	-	11.7143	2.26e-05	0.0104	GGAGAAGGAAAAGCAAGGCAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	19	39	+	11.7143	2.26e-05	0.0104	GGGGGGGCGGGGGGGGTGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	63	83	+	11.7143	2.26e-05	0.0104	GGGGGAGGGAGGCGGTTAGCG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	29	42	+	11.5	2.26e-05	0.0231	TGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	31	44	+	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	31	44	+	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
KLF14	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	36	49	+	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	66	79	-	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	66	79	-	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
KLF14	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	71	84	-	11.5	2.26e-05	0.0231	GGCCCCACCCACCC
JUN	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	72	84	+	12.9796	2.26e-05	0.301	CCTATGACGTCAT
JUN	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	31	43	-	12.9796	2.26e-05	0.301	CCTATGACGTCAT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	+	13.3269	2.26e-05	0.214	CTCACGTGCG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	+	13.3269	2.26e-05	0.214	CTCACGTGCG
BHLHE40	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	+	13.3269	2.26e-05	0.214	CTCACGTGCG
BHLHE40	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	-	13.3269	2.26e-05	0.214	CTCACGTGCG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	+	13.3269	2.26e-05	0.214	CTCACGTGCG
RREB1	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	21	40	+	7.19266	2.26e-05	0.0468	CCCCACGTCACGCCCACCGC
EGR4	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	8	23	+	12.2182	2.27e-05	0.0374	CCTCGCCCCCGCAGAA
EGR4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	37	52	-	12.2182	2.27e-05	0.0374	TCCCGCCCTCGCTCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	38	53	-	12.2182	2.27e-05	0.0374	GCACGCTCACGCACGG
EGR4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	63	78	+	12.2182	2.27e-05	0.0374	TCCCGCCCTCGCTCGC
RARA(var.2)	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	69	85	+	6.7377	2.27e-05	0.563	CGGTCAAGAATAGGTCG
RARA(var.2)	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	30	46	-	6.7377	2.27e-05	0.563	CGGTCAAGAATAGGTCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	5	21	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	5	21	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	15	31	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	15	31	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	18	34	+	7.63636	2.27e-05	0.0174	CCCGACCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	18	34	+	7.63636	2.27e-05	0.0174	CCCGACCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	2	18	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	2	18	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	19	35	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	20	36	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	20	36	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	7	23	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	7	23	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	8	24	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	25	41	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	25	41	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	25	41	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	10	26	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	27	43	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	27	43	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	27	43	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	27	43	+	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	12	28	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	12	28	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	13	29	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	15	31	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	17	33	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	17	33	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	20	36	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	22	38	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	22	38	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	34	50	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	34	50	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	34	50	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	34	50	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	39	55	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	39	55	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	39	55	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	39	55	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
SP4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	74	90	-	7.63636	2.27e-05	0.0174	CCCGCCCCGCCCCGCCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	50	63	+	9.51064	2.27e-05	0.0959	GCAACCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	50	63	+	9.51064	2.27e-05	0.0959	GCAACCCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	50	63	+	9.51064	2.27e-05	0.0959	GCAACCCCGCGGCG
PLAG1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	7	20	-	8.83673	2.27e-05	0.0605	GGGGGCGAGGGGAG
PLAG1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	24	37	+	8.83673	2.27e-05	0.0605	GGGGGCGAGGGGAG
PLAG1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	78	91	-	8.83673	2.27e-05	0.0605	GGGGGCGAGGGGAG
PLAG1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	95	108	+	8.83673	2.27e-05	0.0605	GGGGGCGAGGGGAG
SOX8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	40	55	+	-7.16667	2.27e-05	1	CAAAATCTGCAGTGAT
SOX8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	40	55	+	-7.16667	2.27e-05	1	CAAAATCTGCAGTGAT
SOX8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	40	55	+	-7.16667	2.27e-05	1	CAAAATCTGCAGTGAT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	30	40	+	12.9242	2.27e-05	0.0428	TGGCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	30	40	+	12.9242	2.27e-05	0.0428	TGGCACACCCT
SPIC	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	86	+	12.5915	2.27e-05	0.188	GTAAACAGGAAGTG
SPIC	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	42	-	12.5915	2.27e-05	0.188	GTAAACAGGAAGTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	43	56	+	12.9697	2.27e-05	0.0351	CCTTCCCAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	59	72	-	12.9697	2.27e-05	0.0351	CCTTCCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	59	72	-	12.9697	2.27e-05	0.0351	CCTTCCCAGGCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	9	23	+	12.569	2.27e-05	0.00728	CCTCCTCCTCTTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	9	23	+	12.569	2.27e-05	0.00728	CCTCCTCCTCTTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	18	32	+	12.569	2.27e-05	0.00728	CACCCGCCCTCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	18	32	+	12.569	2.27e-05	0.00728	CACCCGCCCTCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	54	68	+	12.569	2.27e-05	0.00728	GTCCCTCCCTTTCAG
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	85	+	12.569	2.27e-05	0.00728	CCCCCGCCCAACCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	29	43	-	12.569	2.27e-05	0.00728	CCCCCGCCCAACCTC
SP2	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	83	97	-	12.569	2.27e-05	0.00728	CACCCGCCCTCTCGC
SP2	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	92	106	-	12.569	2.27e-05	0.00728	CCTCCTCCTCTTCCC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	13	27	+	12.3455	2.27e-05	0.0974	AGCCCCCTGGCGCGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	18	32	+	12.3455	2.27e-05	0.0974	CACCCCCTGCAGGCT
ZIC4	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	33	47	+	12.3455	2.27e-05	0.0974	AGCCCCCTGGCGCGC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	68	82	-	12.3455	2.27e-05	0.0974	AGCCCCCTGGCGCGC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	88	102	-	12.3455	2.27e-05	0.0974	AGCCCCCTGGCGCGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	61	+	13.5102	2.27e-05	0.12	GGCAGCTGCTGGG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	61	+	13.5102	2.27e-05	0.12	GGCAGCTGCTGGG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	109	+	13.5102	2.27e-05	0.12	GGCAGCTGCTGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	109	+	13.5102	2.27e-05	0.12	GGCAGCTGCTGGG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	52	63	+	10.449	2.27e-05	0.0961	CGTGACGTCAGG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	52	63	+	10.449	2.27e-05	0.0961	CGTGACGTCAGG
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	52	63	-	10.449	2.27e-05	0.0961	CGTGACGTCAGG
ZIC3	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	39	53	+	10.8286	2.27e-05	0.0989	AACGCCCCGCCGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	30	44	-	10.8286	2.27e-05	0.0989	GCCCCCCCACCTCGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	62	76	-	10.8286	2.27e-05	0.0989	AACGCCCCGCCGGGC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	81	98	-	-9.47368	2.27e-05	0.0319	GGAAGGGAAGGAAGTAAG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	57	70	+	8.82653	2.27e-05	0.0605	GGGGCGCTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	57	70	+	8.82653	2.27e-05	0.0605	GGGGCGCTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.1.0	78	91	-	8.82653	2.27e-05	0.0605	GGGGCGCTGGGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	78	91	-	8.82653	2.27e-05	0.0605	GGGGCGCTGGGCGG
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	42	56	+	13.1837	2.27e-05	0.715	TCGATGTTTACAGTA
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	42	56	+	13.1837	2.27e-05	0.715	TCGATGTTTACAGTA
FOXA1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	57	71	-	13.1837	2.27e-05	0.715	TCGATGTTTACAGTA
FOXA1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	57	71	-	13.1837	2.27e-05	0.715	TCGATGTTTACAGTA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	4	23	-	7.18349	2.27e-05	0.0468	GCCCACCCCAAACCACAAGT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	90	109	+	7.18349	2.27e-05	0.0468	GCCCACCCCAAACCACAAGT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	42	51	+	10.7063	2.27e-05	0.0721	CGCACGCGTG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	42	51	+	10.7063	2.27e-05	0.0721	CGCACGCGTG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	35	44	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	35	44	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	86	95	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	86	95	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	86	95	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	86	95	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	86	95	-	10.7063	2.27e-05	0.0721	ACCACGCGCC
Stat5a::Stat5b	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	21	31	-	13.2245	2.27e-05	0.238	CCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	43	53	+	13.2245	2.27e-05	0.238	CCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	43	53	+	13.2245	2.27e-05	0.238	CCTTCCCGGAA
Stat5a::Stat5b	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	62	72	-	13.2245	2.27e-05	0.238	CCTTCCCGGAA
Stat5a::Stat5b	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	84	94	+	13.2245	2.27e-05	0.238	CCTTCCCGGAA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	42	52	-	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	42	52	-	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	42	52	-	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	42	52	-	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	1	11	+	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	1	11	+	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	1	11	+	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	1	11	+	12.9796	2.27e-05	0.112	CTCATGTGATC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	1	11	+	12.9796	2.27e-05	0.112	CTCATGTGATC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	71	82	+	12.5968	2.27e-05	0.281	GCGCCCCCCGCG
XBP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	26	39	-	12.1154	2.27e-05	0.446	GTCAACACGTCAGC
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	26	39	-	12.1154	2.27e-05	0.446	GTCAACACGTCAGC
XBP1	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	76	89	+	12.1154	2.27e-05	0.446	GTCAACACGTCAGC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	28	42	-	12.4182	2.27e-05	0.273	AGAAAAGGAAAGCAG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	28	37	+	11.898	2.27e-05	0.151	CGTCACGAGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	28	37	+	11.898	2.27e-05	0.151	CGTCACGAGG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	52	61	+	11.898	2.27e-05	0.151	CGTCACGAGG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	51	60	-	11.898	2.27e-05	0.151	GGTCACGCGC
Mitf	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	69	78	-	11.898	2.27e-05	0.151	CGTCACGAGG
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	48	59	-	12.7714	2.28e-05	0.217	GGCGCCCTCCGA
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	55	65	+	12.4	2.28e-05	0.0115	GAGCGCGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	93	103	-	12.4	2.28e-05	0.0115	GAGGATGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	25	39	-	9.67241	2.28e-05	0.0302	CTCCGCCCCCTCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	36	50	-	9.67241	2.28e-05	0.0302	CGACTCCCCCGCCCA
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	76	90	+	9.67241	2.28e-05	0.0302	CTCCGCCCCCTCCCG
EGR3	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	72	86	-	9.67241	2.28e-05	0.0302	GCCCGCTCCCGCGCC
SP3	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	18	28	+	12.5447	2.28e-05	0.0136	ACCACACCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	62	72	+	12.5447	2.28e-05	0.0136	ACCACACCCCA
SP3	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	43	53	-	12.5447	2.28e-05	0.0136	ACCACACCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	87	97	-	12.5447	2.28e-05	0.0136	ACCACACCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	99	109	-	12.5447	2.28e-05	0.0136	ACCACACCCCA
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	+	12.0758	2.28e-05	0.151	GGTTACCGTGACAATG
ELF1	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	5	16	+	11.8909	2.28e-05	0.0884	GACCAGGAAGTT
MYBL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	90	104	+	11.6393	2.28e-05	1	GTCCGGTCAACCGTC
MYBL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	90	104	+	11.6393	2.28e-05	1	GTCCGGTCAACCGTC
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	19	29	+	13.0909	2.28e-05	0.0421	CGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	86	96	-	13.0909	2.28e-05	0.0421	CGACTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	86	96	-	13.0909	2.28e-05	0.0421	CGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	86	96	-	13.0909	2.28e-05	0.0421	CGACTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	86	96	-	13.0909	2.28e-05	0.0421	CGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	86	96	-	13.0909	2.28e-05	0.0421	CGACTTCCTGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	2	20	-	12.4032	2.28e-05	0.137	GTGGGCGGCCGGGTGGGGA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	2	20	-	12.4032	2.28e-05	0.137	GTGGGCGGCCGGGTGGGGA
PAX5	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	95	113	+	12.4032	2.28e-05	0.137	GTGGGCGGCCGGGTGGGGA
ETV1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.7636	2.28e-05	0.0857	AGCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	12.7636	2.28e-05	0.0857	ACCGGAAACG
FLI1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	12.8936	2.28e-05	0.0896	ACCGGATGTC
FLI1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	12.8936	2.28e-05	0.0896	ACCGGATGTC
Ascl2	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	71	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	74	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	91	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	91	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	92	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	107	-	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	85	94	+	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	85	94	+	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	85	94	+	13.0286	2.28e-05	0.173	TGCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	85	94	+	13.0286	2.28e-05	0.173	TGCAGCTGCT
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	35	50	+	12.7683	2.28e-05	0.71	GCTCATGCTAATTCCA
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	35	50	+	12.7683	2.28e-05	0.71	GCTCATGCTAATTCCA
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	44	59	-	12.7683	2.28e-05	0.71	GCTCATGCTAATTCCA
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	44	59	-	12.7683	2.28e-05	0.71	GCTCATGCTAATTCCA
SP4	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	2	18	+	7.61818	2.28e-05	0.0174	GCAGCTCCGCCCTCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	55	71	-	7.61818	2.28e-05	0.0174	TCCGCCCCGCCCCGACC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	55	71	-	7.61818	2.28e-05	0.0174	TCCGCCCCGCCCCGACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	55	71	-	7.61818	2.28e-05	0.0174	TCCGCCCCGCCCCGACC
SP4	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	97	113	-	7.61818	2.28e-05	0.0174	GCAGCTCCGCCCTCCCC
RREB1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	16	35	-	7.17431	2.28e-05	0.0468	ACCCACCCCGCCCTCCCAGC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	1	20	+	7.17431	2.28e-05	0.0468	ACTCCACCCTACCCCTCCCA
RREB1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	80	99	+	7.17431	2.28e-05	0.0468	ACCCACCCCGCCCTCCCAGC
JUND(var.2)	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	39	-	13	2.28e-05	0.311	CCAGATGACGTCAGC
RXRB	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	63	-	4.81818	2.28e-05	0.387	AGGGCCAAAGTTTA
RXRB	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	92	-	4.81818	2.28e-05	0.387	AGGGCCAAAGTTTA
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	29	43	-	10.3684	2.28e-05	0.17	AGGGTGACTCAGAAC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	12	21	+	12.5714	2.28e-05	0.0134	AGGGTGTGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	52	61	-	12.5714	2.28e-05	0.0134	AGGGTGTGGG
HES7	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	35	46	-	7.22414	2.28e-05	0.189	TGCCCCGTGCCG
HES7	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	69	80	+	7.22414	2.28e-05	0.189	TGCCCCGTGCCG
NFYA	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	22	39	-	11.6829	2.28e-05	0.0915	GAGCTCCCGATTGGCCGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	94	104	+	13.0656	2.28e-05	0.042	GCGGAAGTAGG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	55	68	-	11.4828	2.28e-05	0.0232	GGCCCCACCCCCTG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	+	10.3469	2.28e-05	0.194	AGTGACTCACT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	102	114	-	12.7049	2.28e-05	0.359	CTGTCTCACTCAT
E2F3	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	17	34	-	7.32727	2.28e-05	1	GAAAATAGCGCCCTGTGC
E2F3	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	81	98	+	7.32727	2.28e-05	1	GAAAATAGCGCCCTGTGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	-	13.5532	2.28e-05	0.171	AGTGACTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	-	13.5532	2.28e-05	0.171	AGTGACTCACC
FOS	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	+	13.5532	2.28e-05	0.171	AGTGACTCACC
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	61	71	-	13.1154	2.28e-05	0.265	GGGCTGAGTCA
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	5	18	+	13.25	2.28e-05	0.17	AGCCAGTGACTCAG
Vdr	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	44	59	+	7.65574	2.28e-05	0.748	AGGTTAATGCAGTTCA
Vdr	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	56	71	-	7.65574	2.28e-05	0.748	AGGTTAATGCAGTTCA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	+	12.6939	2.28e-05	0.0857	CGCCCGGAGGGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	37	48	-	12.6939	2.28e-05	0.0857	AGCCCACAGGCA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	27	44	+	-9.5	2.28e-05	0.0319	GGGGGTGGGGCAGGTGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	88	-	-9.5	2.28e-05	0.0319	GGGGGTGGGGCAGGTGGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	35	54	+	7.16514	2.28e-05	0.0468	CCCCACCCCATCCCCTCCTT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	35	54	+	7.16514	2.28e-05	0.0468	CCCCACCCCATCCCCTCCTT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	63	82	+	7.16514	2.28e-05	0.0468	CCCCACCCCATCCCCTCCTT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	63	82	+	7.16514	2.28e-05	0.0468	CCCCACCCCATCCCCTCCTT
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	19	33	+	-0.542857	2.29e-05	0.656	CGGGGTCATAGTTCA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	84	97	+	8.80612	2.29e-05	0.0605	GGGGCCGACTGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	84	97	+	8.80612	2.29e-05	0.0605	GGGGCCGACTGGCG
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	20	33	+	10.3857	2.29e-05	0.123	CGCTGACGTCAGCA
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	20	33	+	10.3857	2.29e-05	0.123	CGCTGACGTCAGCA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	20	33	+	10.3857	2.29e-05	0.123	CGCTGACGTCAGCA
ATF7	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	82	95	-	10.3857	2.29e-05	0.123	CGCTGACGTCAGCA
NRF1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	45	55	+	12.3818	2.29e-05	0.0115	CCGCCTGCCCA
NRF1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	41	51	-	12.3818	2.29e-05	0.0115	CCGCCTGCCCA
NRF1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	52	62	-	12.3818	2.29e-05	0.0115	CCGCCTGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	64	74	+	12.3818	2.29e-05	0.0115	CCGCCTGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	60	70	-	12.3818	2.29e-05	0.0115	CCGCCTGCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	17	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	17	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	18	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	22	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	27	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	27	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	34	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	49	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	62	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	62	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	62	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	62	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	71	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	76	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	97	+	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	18	28	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	22	32	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	39	49	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	44	54	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	47	57	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	47	57	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	47	57	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	47	57	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	66	76	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	81	91	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
SP3	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	93	103	-	12.5203	2.29e-05	0.0136	TCCCCGCCCCT
TFCP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	29	38	+	13.0303	2.29e-05	1	AAACCGGATA
TFCP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	29	38	+	13.0303	2.29e-05	1	AAACCGGATA
IRF7	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	7	20	-	11.3226	2.29e-05	0.586	GCCAAACTGAAAGC
IRF7	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	95	108	+	11.3226	2.29e-05	0.586	GCCAAACTGAAAGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	+	12.5517	2.29e-05	0.0554	CGCCCGACGGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	-	12.5517	2.29e-05	0.0554	CGCCCGACGGGCT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	2	22	-	11.6939	2.29e-05	0.0104	GGGAGTGGGGGAGGGAGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	2	22	-	11.6939	2.29e-05	0.0104	GGGAGTGGGGGAGGGAGGGTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	25	45	-	11.6939	2.29e-05	0.0104	GGGAGAGGAAAGAGGTGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	25	45	-	11.6939	2.29e-05	0.0104	GGGAGAGGAAAGAGGTGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	25	45	-	11.6939	2.29e-05	0.0104	GGGAGAGGAAAGAGGTGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	25	45	-	11.6939	2.29e-05	0.0104	GGGAGAGGAAAGAGGTGGAGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	34	54	-	11.6939	2.29e-05	0.0104	GGGGGTGGGTGAGGAGAACAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	78	98	-	11.6939	2.29e-05	0.0104	GGAGATGAAGAAAGAAGAGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	84	104	-	11.6939	2.29e-05	0.0104	GGGAAAAGGGGAGGTGGGAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	11	31	+	11.6939	2.29e-05	0.0104	GGGAAAAGGGGAGGTGGGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	12	32	+	11.6939	2.29e-05	0.0104	AGAGAAGGGAGGAGGTAAGCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	64	84	+	11.6939	2.29e-05	0.0104	GGGGGTGGGTGAGGAGAACAG
Rxra	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	41	-	6.53659	2.29e-05	0.31	GGGGTCAGAAGTCG
MLXIPL	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	13.2273	2.29e-05	0.171	GGCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	13.2273	2.29e-05	0.171	GGCACGTGAC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	12.8286	2.29e-05	0.0817	ACCGGAACTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	12.8286	2.29e-05	0.0817	ACCGGAACTA
Pparg::Rxra	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	39	-	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
Pparg::Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	76	90	+	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	76	90	+	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	76	90	+	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
Pparg::Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	76	90	+	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	76	90	+	12.4234	2.29e-05	0.142	CAGGGTCACAGGCCA
TBX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	68	78	+	12.4545	2.29e-05	1	AAGGTGTGAGC
TBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	68	78	+	12.4545	2.29e-05	1	AAGGTGTGAGC
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	68	78	+	12.4545	2.29e-05	1	AAGGTGTGAGC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	9	25	-	9.75862	2.29e-05	0.882	AGGCACAGGGGGTCCCC
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	9	25	-	9.75862	2.29e-05	0.882	AGGCACAGGGGGTCCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	25	41	-	7.6	2.29e-05	0.0174	GTGGTCCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	25	41	-	7.6	2.29e-05	0.0174	GTGGTCCCGCCCCCGAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	25	41	-	7.6	2.29e-05	0.0174	GTGGTCCCGCCCCCGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	26	42	-	7.6	2.29e-05	0.0174	CCGGCCCCGCCTTCCTT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	56	72	+	7.6	2.29e-05	0.0174	CCGGCCCCGCCTTCCTT
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	-	6.26531	2.29e-05	0.965	TCACGGCTGTCA
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	-	6.26531	2.29e-05	0.965	TCACGGCTGTCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	30	44	+	12.5517	2.29e-05	0.00732	GGTCCGCCCCTGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	30	44	+	12.5517	2.29e-05	0.00732	GGTCCGCCCCTGAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	30	44	+	12.5517	2.29e-05	0.00732	GGTCCGCCCCTGAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	30	44	+	12.5517	2.29e-05	0.00732	GGTCCGCCCCTGAGG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	31	45	+	12.5517	2.29e-05	0.00732	GCCCTTCCCCCACCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	31	45	+	12.5517	2.29e-05	0.00732	GCCCTTCCCCCACCC
SP2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	65	79	+	12.5517	2.29e-05	0.00732	CCCCCTCCCCGCCAC
SP2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	36	50	-	12.5517	2.29e-05	0.00732	CCCCCTCCCCGCCAC
SP2	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	70	84	-	12.5517	2.29e-05	0.00732	GCCCTTCCCCCACCC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	94	108	-	12.5517	2.29e-05	0.00732	CTTCCGCCTCCACCT
E2F6	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	55	65	-	13.2931	2.29e-05	0.0413	ACGCGGGAGAG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	56	66	+	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	56	66	+	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	56	66	+	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	72	82	-	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	72	82	-	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	72	82	-	12.8197	2.29e-05	0.131	AACAGGAAATT
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	72	82	-	12.8197	2.29e-05	0.131	AACAGGAAATT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr14:61789501..61789615,+__2365.1.0.0	14	31	+	-9.51316	2.29e-05	0.0319	GTAGGAAAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr14:61789501..61789615,-__294.1.0.0	84	101	-	-9.51316	2.29e-05	0.0319	GTAGGAAAGGCAGGGAAG
KLF16	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	24	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	26	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	44	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	51	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	51	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	55	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	70	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	102	+	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	1	11	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	13	23	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	13	23	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	18	28	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	21	31	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	21	31	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	45	55	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	68	78	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	71	81	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	91	101	-	12.5862	2.29e-05	0.0129	CTCCCGCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	12	31	+	7.15596	2.29e-05	0.0468	CCCCGACACACCTCCAATCG
SPIC	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	44	57	+	12.5775	2.29e-05	0.189	AGGAAGCGGAAGCA
SMAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	28	37	+	11.6909	2.29e-05	1	TGTCTAGTCA
SMAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	28	37	+	11.6909	2.29e-05	1	TGTCTAGTCA
SMAD3	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	59	68	-	11.6909	2.29e-05	1	TGTCTAGTCA
SMAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	75	84	-	11.6909	2.29e-05	1	TGTCTAGTCA
SMAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	75	84	-	11.6909	2.29e-05	1	TGTCTAGTCA
DMRT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	23	33	+	12.5246	2.29e-05	1	ATTGTATCATT
DMRT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	23	33	+	12.5246	2.29e-05	1	ATTGTATCATT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	51	64	+	6.83636	2.29e-05	0.132	TAAAAAAGGAACTG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	51	64	+	6.83636	2.29e-05	0.132	TAAAAAAGGAACTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	51	64	+	6.83636	2.29e-05	0.132	TAAAAAAGGAACTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	51	64	+	6.83636	2.29e-05	0.132	TAAAAAAGGAACTG
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	6	15	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	6	15	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	49	58	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	49	58	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	63	72	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	101	110	-	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	5	14	+	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	5	14	+	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	40	49	+	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	43	52	+	13.3673	2.29e-05	0.0115	CCCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	57	66	+	13.3673	2.29e-05	0.0115	CCCACGCCCC
ELK4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	103	-	13.0727	2.29e-05	0.0423	CTACTTCCGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	+	12.8182	2.29e-05	0.0548	TCCCCGGAGGCT
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	-	12.8182	2.29e-05	0.0548	TCCCCGGAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	70	81	-	12.8182	2.29e-05	0.0548	AACCCCAGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	70	81	-	12.8182	2.29e-05	0.0548	AACCCCAGGGCA
ZIC4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	2	16	+	12.3273	2.3e-05	0.0974	GGACCCCCACCGCGG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	10	24	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	10	24	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	10	24	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	10	24	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	53	67	+	12.3273	2.3e-05	0.0974	GGACCCCCACCGCGG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	55	69	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	48	62	-	12.3273	2.3e-05	0.0974	GGACCCCCACCGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	67	81	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	67	81	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	67	81	+	12.3273	2.3e-05	0.0974	CCCGCCCCGCCGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	99	113	-	12.3273	2.3e-05	0.0974	GGACCCCCACCGCGG
MYBL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	43	54	+	12.2759	2.3e-05	1	AGCGTTAACTTC
MYBL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	43	54	+	12.2759	2.3e-05	1	AGCGTTAACTTC
HOXB2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	10.2075	2.3e-05	1	GGTAATTAAG
HOXB2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	10.2075	2.3e-05	1	GGTAATTAAG
EHF	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	67	78	+	12.4098	2.3e-05	0.107	AAACCGGAAGCG
EHF	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	84	95	+	12.4098	2.3e-05	0.107	TATCCGGAAGCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	22	-	12.6837	2.3e-05	0.0857	TCCCTCGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	93	104	+	12.6837	2.3e-05	0.0857	TCCCTCGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	93	104	+	12.6837	2.3e-05	0.0857	TCCCTCGGGGCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	17	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	17	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	17	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	17	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	17	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	10	20	+	13.0192	2.3e-05	0.00843	TCCCCACCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	12	22	+	13.0192	2.3e-05	0.00843	TGCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	12	22	+	13.0192	2.3e-05	0.00843	TGCCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	12	22	-	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	12	22	-	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	12	22	-	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	12	22	-	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	25	35	+	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	25	35	+	13.0192	2.3e-05	0.00843	GCTCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	24	34	-	13.0192	2.3e-05	0.00843	GTTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	24	34	-	13.0192	2.3e-05	0.00843	GTTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	61	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	61	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	42	52	-	13.0192	2.3e-05	0.00843	TCCCCACCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	45	55	-	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	70	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	70	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	70	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	70	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	70	+	13.0192	2.3e-05	0.00843	CTCCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	93	103	-	13.0192	2.3e-05	0.00843	TGCCCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	95	105	-	13.0192	2.3e-05	0.00843	TCCCCACCCTC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	-	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	+	13.0727	2.3e-05	0.063	CGCCCGCGGCG
Hnf4a	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	40	55	-	6.94545	2.3e-05	0.312	GGGGCCGAAGGCCAAT
POU3F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	14	25	+	12.6265	2.3e-05	1	ATATGTAAATCT
POU3F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	14	25	+	12.6265	2.3e-05	1	ATATGTAAATCT
SP8	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	55	66	+	12.5921	2.3e-05	0.0203	CCCACCCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	67	78	+	12.5921	2.3e-05	0.0203	CCCACCCCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	67	78	+	12.5921	2.3e-05	0.0203	CCCACCCCCCTC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	67	78	-	12.5921	2.3e-05	0.0203	CCCACCCCCCTC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	10	27	+	-9.52632	2.3e-05	0.0319	GGGGGGAGGGGTGGAGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	59	76	+	-9.52632	2.3e-05	0.0319	GGAGGGCGGGGAGGGAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	31	48	-	-9.52632	2.3e-05	0.0319	GGAGGAAGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	39	56	-	-9.52632	2.3e-05	0.0319	GGAGGGCGGGGAGGGAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	72	89	-	-9.52632	2.3e-05	0.0319	GGAGGAAGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	72	89	-	-9.52632	2.3e-05	0.0319	GGAGGAAGAGGAGGAGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	88	105	-	-9.52632	2.3e-05	0.0319	GGGGGGAGGGGTGGAGGC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	78	90	+	11.2879	2.3e-05	0.225	AGGGACATTCCCA
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	3	15	-	6.26531	2.3e-05	0.233	GGGGGAATCCCGC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	3	15	-	6.26531	2.3e-05	0.233	GGGGGAATCCCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	19	32	+	11.4655	2.3e-05	0.0233	CACCACGCCCAGCT
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	27	40	+	11.4655	2.3e-05	0.0233	GGGCCCGCCCCCAG
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	44	54	+	13.551	2.3e-05	0.144	CTGTGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	44	54	+	13.551	2.3e-05	0.144	CTGTGACTCAT
JUNB	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	22	32	-	13.551	2.3e-05	0.144	CTGTGACTCAT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	51	69	-	12.3871	2.3e-05	0.137	CTGCGCGCCAGGGCGTAGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	51	69	-	12.3871	2.3e-05	0.137	CTGCGCGCCAGGGCGTAGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	78	-	12.3871	2.3e-05	0.137	GGGAGCAGCGGGGTGGGGT
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	78	-	12.3871	2.3e-05	0.137	GGGAGCAGCGGGGTGGGGT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	78	-	12.3871	2.3e-05	0.137	GGGAGCAGCGGGGTGGGGT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	+	12.8269	2.3e-05	0.0703	GGCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	+	12.8269	2.3e-05	0.0703	CGCCCTAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	+	12.8269	2.3e-05	0.0703	CGCCCTAGGCT
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	3	13	-	12.7818	2.3e-05	0.244	ATTCCAGGAAC
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	47	57	+	12.7818	2.3e-05	0.244	ATTCCAGGAAC
SP3	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	4	14	-	12.5122	2.3e-05	0.0137	CACACTCCCCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	2	12	-	13.3276	2.3e-05	0.0448	CCGCGGGAGAC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	2	12	-	13.3276	2.3e-05	0.0448	CCGCGGGAGAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	25	41	+	7.58182	2.3e-05	0.0174	AAGTCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	25	41	+	7.58182	2.3e-05	0.0174	AAGTCCCCGCCCCCGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	26	42	+	7.58182	2.3e-05	0.0174	GCTGCCCCGCCTCTTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	26	42	+	7.58182	2.3e-05	0.0174	GCTGCCCCGCCTCTTCC
HOXD13	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	47	56	+	13.0952	2.3e-05	1	GCAATAAAAT
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	3	20	-	12.7111	2.3e-05	0.965	CCCACCTCAGCAGATCTC
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	3	20	-	12.7111	2.3e-05	0.965	CCCACCTCAGCAGATCTC
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	12	26	-	12.4144	2.3e-05	0.142	GCAGGGGACAGGGGA
Pparg::Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	12	26	-	12.4144	2.3e-05	0.142	GCAGGGGACAGGGGA
Pparg::Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	12	26	-	12.4144	2.3e-05	0.142	GCAGGGGACAGGGGA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	12	26	-	12.4144	2.3e-05	0.142	GCAGGGGACAGGGGA
Pparg::Rxra	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	89	103	+	12.4144	2.3e-05	0.142	GCAGGGGACAGGGGA
EGR3	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	80	94	-	9.63793	2.31e-05	0.0302	CTCTGCCTCCGCACT
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	2	21	-	7.13761	2.31e-05	0.0468	CCCCCACCAAGCACACACCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	39	49	+	11.7759	2.31e-05	0.0649	CCGGCCACGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	39	49	+	11.7759	2.31e-05	0.0649	CCGGCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	39	49	+	11.7759	2.31e-05	0.0649	CCGGCCACGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	66	76	-	11.7759	2.31e-05	0.0649	CCGGCCACGCT
NR2C2	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	7	21	+	11.7429	2.31e-05	0.0969	GCGGGTCAGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	17	31	-	11.7429	2.31e-05	0.0969	CAGGGACAGGGGGCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	17	31	-	11.7429	2.31e-05	0.0969	CAGGGACAGGGGGCA
NR2C2	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	94	108	-	11.7429	2.31e-05	0.0969	GCGGGTCAGGGGCGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	44	61	+	-9.53947	2.31e-05	0.0319	GGAGGAGGGAGAGGAAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	52	69	+	-9.53947	2.31e-05	0.0319	GGAGGAGGGAGAGGAAGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	46	63	-	-9.53947	2.31e-05	0.0319	GGAGGAGGGAGAGGAAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	54	71	-	-9.53947	2.31e-05	0.0319	GGAGGAGGGAGAGGAAGA
RAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	11.7288	2.31e-05	1	GCCAATTAGA
RAX	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	11.7288	2.31e-05	1	GCCAATTAGA
RAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	11.7288	2.31e-05	1	GCCAATTAGA
RAX	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	11.7288	2.31e-05	1	GCCAATTAGA
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	79	92	-	8.63265	2.31e-05	0.365	CGGCAGGCGGCCAA
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	23	36	+	8.63265	2.31e-05	0.365	CGGCAGGCGGCCAA
SPDEF	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	59	-	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	62	72	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	62	72	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	62	72	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	62	72	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	62	72	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	65	75	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	65	75	+	12.7273	2.31e-05	0.206	TCCCGGAAGTG
Ddit3::Cebpa	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	42	53	+	12.7778	2.31e-05	1	TGATGCAACACC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	+	12.7636	2.31e-05	0.0893	TCCCCGCAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	+	12.7636	2.31e-05	0.0893	TCCCCGCAGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	+	12.7636	2.31e-05	0.0893	AGCCTCCAGGCG
EGR1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	15	28	-	12.4038	2.31e-05	0.0131	CGCCTGCCCACGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	67	80	+	12.4038	2.31e-05	0.0131	GCGCCGCCGACTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	67	80	+	12.4038	2.31e-05	0.0131	GCGCCGCCGACTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	65	78	-	12.4038	2.31e-05	0.0131	GAGCCGCCGACGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	87	100	+	12.4038	2.31e-05	0.0131	CGCCTGCCCACGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	87	100	+	12.4038	2.31e-05	0.0131	CGCCTGCCCACGCG
ETV5	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	12.2364	2.31e-05	0.0777	ACCGGAAATG
ETV5	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	12.2364	2.31e-05	0.0777	ACCGGAAATG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	12.2364	2.31e-05	0.0777	GCCGGAAGCC
ETV5	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	12.2364	2.31e-05	0.0777	ACCGGAAATG
ETV5	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	12.2364	2.31e-05	0.0777	ACCGGAAATG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	75	84	-	12.8103	2.31e-05	0.16	GACACGCGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	75	84	-	12.8103	2.31e-05	0.16	GACACGCGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	75	84	-	12.8103	2.31e-05	0.16	GACACGCGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	75	84	-	12.8103	2.31e-05	0.16	GACACGCGCC
EBF1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	42	55	-	11.7377	2.31e-05	0.365	TCTCCCCGGGGAGA
EBF1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	60	73	-	11.7377	2.31e-05	0.365	TCTCCCCGGGGAGA
EBF1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	42	55	+	11.7377	2.31e-05	0.365	TCTCCCCGGGGAGA
EBF1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	60	73	+	11.7377	2.31e-05	0.365	TCTCCCCGGGGAGA
ELF1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	25	36	+	11.8727	2.31e-05	0.0884	GAGGCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	90	-	11.8727	2.31e-05	0.0884	GAGGCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	90	-	11.8727	2.31e-05	0.0884	GAGGCGGAAGTG
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	99	110	+	11.8727	2.31e-05	0.0884	GAGGCGGAAGTG
Hnf4a	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	47	62	+	6.92727	2.31e-05	0.312	GAGCTCAGAGTCCGGA
Hnf4a	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	53	68	-	6.92727	2.31e-05	0.312	GAGCTCAGAGTCCGGA
Hnf4a	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	64	79	-	6.92727	2.31e-05	0.312	GGGGGCGAAGGCCGAC
HINFP	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	36	47	+	12.7424	2.31e-05	0.109	CAGCCTCCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	100	111	-	12.7424	2.31e-05	0.109	CAGCCTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	100	111	-	12.7424	2.31e-05	0.109	CAGCCTCCGCGC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	22	33	-	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	22	33	-	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	22	33	-	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	22	33	-	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	22	33	-	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	44	55	+	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	44	55	+	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	44	55	+	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	44	55	+	12.6224	2.31e-05	0.146	GGGCTGGGGGTA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	55	65	+	12.3636	2.31e-05	0.0116	GCACGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	55	65	+	12.3636	2.31e-05	0.0116	GCACGTGCGCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	69	79	+	12.5041	2.31e-05	0.0137	CCTACGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	36	46	-	12.5041	2.31e-05	0.0137	CCTACGCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	41	+	7.12844	2.31e-05	0.0468	CACCCCCCCCCCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	26	40	+	12.5345	2.31e-05	0.00732	TCTCCTCCCCCTCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	37	51	+	12.5345	2.31e-05	0.00732	CACCCGCCCCCCTCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	37	51	+	12.5345	2.31e-05	0.00732	CACCCGCCCCCCTCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	37	51	+	12.5345	2.31e-05	0.00732	CACCCGCCCCCCTCA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	37	51	+	12.5345	2.31e-05	0.00732	CACCCGCCCCCCTCA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	61	75	+	12.5345	2.31e-05	0.00732	GCCCCGCCCTGGGAG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	61	75	+	12.5345	2.31e-05	0.00732	GCCCCGCCCTGGGAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	61	75	+	12.5345	2.31e-05	0.00732	GCCCCGCCCTGGGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	64	78	+	12.5345	2.31e-05	0.00732	TGCCCGCCTCGCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	64	78	+	12.5345	2.31e-05	0.00732	TGCCCGCCTCGCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	64	78	+	12.5345	2.31e-05	0.00732	TGCCCGCCTCGCGCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	64	78	+	12.5345	2.31e-05	0.00732	TGCCCGCCTCGCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	64	78	+	12.5345	2.31e-05	0.00732	TGCCCGCCTCGCGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	78	92	+	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	78	92	+	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	78	92	+	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	78	92	+	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	33	47	-	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	33	47	-	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	33	47	-	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	33	47	-	12.5345	2.31e-05	0.00732	TTCCCTCCCTCCACC
SP2	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	40	54	-	12.5345	2.31e-05	0.00732	GCCCCGCCCTGGGAG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	26	43	+	-9.55263	2.31e-05	0.0319	GGAGGAGGAGGAGGAAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	34	51	+	-9.55263	2.31e-05	0.0319	GGAGGAGGAGGAGGAAGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	64	81	-	-9.55263	2.31e-05	0.0319	GGAGGAGGAGGAGGAAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	72	89	-	-9.55263	2.31e-05	0.0319	GGAGGAGGAGGAGGAAGA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
ETV6	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.9423	2.31e-05	0.0754	GCCGGAAGTT
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	45	55	-	13.0612	2.31e-05	0.196	CTTCCGGAAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	45	55	-	13.0612	2.31e-05	0.196	CTTCCGGAAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	45	55	-	13.0612	2.31e-05	0.196	CTTCCGGAAAA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	62	76	+	11.0492	2.31e-05	0.0397	TGCCCCGCCCCACTG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	62	76	+	11.0492	2.31e-05	0.0397	TGCCCCGCCCCACTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	2	22	-	11.6735	2.31e-05	0.0105	GGGAGGGGAGTAGGAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	37	57	-	11.6735	2.31e-05	0.0105	GGAGAGGAGAGAGGAAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	37	57	-	11.6735	2.31e-05	0.0105	GGAGAGGAGAGAGGAAGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	45	65	-	11.6735	2.31e-05	0.0105	CGGGATGGGTGGGGAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	40	60	+	11.6735	2.31e-05	0.0105	GGAGAAAGGGGAGGGATTAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	40	60	+	11.6735	2.31e-05	0.0105	GGAGAAAGGGGAGGGATTAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	41	61	+	11.6735	2.31e-05	0.0105	GGAGAGGAGAGAGGAAGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	41	61	+	11.6735	2.31e-05	0.0105	GGAGAGGAGAGAGGAAGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	58	78	+	11.6735	2.31e-05	0.0105	GGAGAGGAGAGAGGAAGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	80	100	+	11.6735	2.31e-05	0.0105	GAGGGATTGCGGGCCGGAGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	+	12.6393	2.31e-05	0.064	GCCCCCCGGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	+	12.6393	2.31e-05	0.064	GCCCCCCGGGGCC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	-	12.6393	2.31e-05	0.064	GCCCCCCGGGGCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	+	12.6393	2.31e-05	0.064	GCCCCCCGGGGCC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	-	12.6393	2.31e-05	0.064	GCCCCCCGGGGCC
RFX2	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	+	9.08571	2.31e-05	0.145	TGGCGCCATGGCGACG
RFX2	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	-	9.08571	2.31e-05	0.145	TGGCGCCATGGCGACG
TBX20	WILDTYPE__Antisense.noflip.NA__chr2:74612556..74612670,+__446.1.0.0	68	78	-	12.5606	2.31e-05	0.921	AAGTTGTGAAA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	8	23	+	12.1818	2.31e-05	0.0374	CTAGGCCCCCGCCCTC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	99	113	-	12.4091	2.32e-05	0.0759	CTCCCGCGGCGGCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	2	16	+	12.4091	2.32e-05	0.0759	CTCCCGCGGCGGCTG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	2	16	+	12.4091	2.32e-05	0.0759	CTCCCGCGGCGGCTG
Spz1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	93	103	-	12.6909	2.32e-05	0.595	ATGGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	93	103	-	12.6909	2.32e-05	0.595	ATGGTAGCAGC
Spz1	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	12	22	+	12.6909	2.32e-05	0.595	ATGGTAGCAGC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	+	12.5172	2.32e-05	0.0554	CGCCCTGCAGGCG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	-	12.5172	2.32e-05	0.0554	CGCCCTGCAGGCG
HOXC12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	82	92	+	12.8545	2.32e-05	1	GGTAGTAAAAT
USF2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	83	93	-	13.2653	2.32e-05	0.085	GCCATGTGATA
SP4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	27	43	+	7.56364	2.32e-05	0.0175	TCCGCCCCGCCCCGCCC
SP4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	72	88	-	7.56364	2.32e-05	0.0175	TCCGCCCCGCCCCGCCC
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	39	48	+	12.4157	2.32e-05	0.93	CATCTGGAAT
Hand1::Tcf3	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	34	43	-	12.4157	2.32e-05	0.93	CATCTGGAAT
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	5	15	-	12.9818	2.32e-05	0.047	TGCCTGCGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	-	12.9818	2.32e-05	0.047	CGCCGGAGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	-	12.9818	2.32e-05	0.047	CGCCGGAGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	-	12.9818	2.32e-05	0.047	CGCCGGAGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	89	99	-	12.9818	2.32e-05	0.047	TGCCTGCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	26	+	12.9818	2.32e-05	0.047	TGCCTGCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	26	+	12.9818	2.32e-05	0.047	TGCCTGCGGCT
TFAP2A	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	+	12.9818	2.32e-05	0.047	CGCCGGAGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	+	12.9818	2.32e-05	0.047	CGCCGGAGGCC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	5	18	+	8.77551	2.32e-05	0.0605	GGGGGCGAGGGGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	5	18	+	8.77551	2.32e-05	0.0605	GGGGGCGAGGGGCG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	5	18	+	8.77551	2.32e-05	0.0605	GGGGGCGAGGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	5	18	+	8.77551	2.32e-05	0.0605	GGGGGCGAGGGGCG
PLAG1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	22	35	+	8.77551	2.32e-05	0.0605	GGGGCGCGCGGGGA
RFX4	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	+	12.0455	2.32e-05	0.152	CGTTGCCATAGTTCCA
RFX4	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	-	12.0455	2.32e-05	0.152	CGTTGCCATAGTTCCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	11	24	+	11.4483	2.32e-05	0.0233	GGTCACACCCACAC
KLF14	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	39	52	-	11.4483	2.32e-05	0.0233	TGCCCCGCCTCTCT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	40	53	-	11.4483	2.32e-05	0.0233	TGCCCCGCCCTCCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	47	60	-	11.4483	2.32e-05	0.0233	GGTCACACCCACAC
KLF14	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	63	76	+	11.4483	2.32e-05	0.0233	TGCCCCGCCTCTCT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	64	77	+	11.4483	2.32e-05	0.0233	TGCCCCGCCCTCCA
ELF5	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	42	52	+	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	82	92	+	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	82	92	+	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	85	95	+	12.5273	2.32e-05	0.112	ATCCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	102	112	+	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	102	112	+	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	63	73	-	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	94	104	-	12.5273	2.32e-05	0.112	TCCAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	94	104	-	12.5273	2.32e-05	0.112	TCCAGGAAGTT
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	64	77	+	5.04545	2.32e-05	0.122	CGGAGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	64	77	+	5.04545	2.32e-05	0.122	CGGAGACGTCAGCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	64	77	+	5.04545	2.32e-05	0.122	CGGAGACGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	64	77	+	5.04545	2.32e-05	0.122	CGGAGACGTCAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	12.3404	2.32e-05	0.0571	GCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	12.3404	2.32e-05	0.0571	GCCGGAAGCT
MEF2C	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	79	93	+	12.7458	2.32e-05	0.557	CAGCCATAAATAACA
Znf423	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	100	114	-	8.4382	2.32e-05	0.182	AGGCCCCTAGGTGGC
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	86	97	+	12.8587	2.32e-05	1	GTTTGTTTGCTC
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	86	97	+	12.8587	2.32e-05	1	GTTTGTTTGCTC
MTF1	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	59	72	+	9.21951	2.32e-05	0.5	GGTGCACACAGTCC
Nr5a2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	37	51	+	12.4138	2.32e-05	0.362	GGGTTCAAGGGCTTC
Nr5a2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	64	78	-	12.4138	2.32e-05	0.362	GGGTTCAAGGGCTTC
TBX21	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	58	67	+	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	68	77	+	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	68	77	+	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	73	82	+	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	38	47	-	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	48	57	-	12.7818	2.32e-05	1	TAAGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	48	57	-	12.7818	2.32e-05	1	TAAGTGTGAA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	7	15	+	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	13	21	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	40	48	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	40	48	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	51	59	+	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	56	64	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	56	64	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	56	64	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	56	64	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	56	64	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	57	65	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	69	77	+	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	69	77	+	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	65	73	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	89	97	+	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	83	91	-	10.6579	2.32e-05	0.192	CTGCCCTGA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	102	110	+	10.6579	2.32e-05	0.192	CTGCCCTGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	+	13.5091	2.32e-05	0.148	GGTGACTCACT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	+	13.5091	2.32e-05	0.148	AATGAGTCATA
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	7	21	+	9.62069	2.32e-05	0.0302	CCCTGCCCCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	21	35	+	9.62069	2.32e-05	0.0302	CCCTGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	29	43	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	29	43	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	21	35	-	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	45	59	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	45	59	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	45	59	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	45	59	+	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	36	50	-	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	36	50	-	9.62069	2.32e-05	0.0302	CGCCCCCCCCGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	42	56	-	9.62069	2.32e-05	0.0302	CCCTGCCCCCGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	59	73	+	9.62069	2.32e-05	0.0302	CCCTGCCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	62	76	-	9.62069	2.32e-05	0.0302	CTCCTCCCACGCTGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	62	76	-	9.62069	2.32e-05	0.0302	CTCCTCCCACGCTGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	62	76	-	9.62069	2.32e-05	0.0302	CTCCTCCCACGCTGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	62	76	-	9.62069	2.32e-05	0.0302	CTCCTCCCACGCTGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	62	76	-	9.62069	2.32e-05	0.0302	CTCCTCCCACGCTGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	94	108	-	9.62069	2.32e-05	0.0302	CCCTGCCCCCGCCCC
Sox6	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	75	84	+	13.5571	2.32e-05	0.702	GCATTGTTTT
Sox6	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	81	90	+	13.5571	2.32e-05	0.702	GCATTGTTTT
Sox6	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	25	34	-	13.5571	2.32e-05	0.702	GCATTGTTTT
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	62	76	+	12.3091	2.32e-05	0.0974	CCCACCCCGCTGCTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	62	76	+	12.3091	2.32e-05	0.0974	CCCACCCCGCTGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	62	76	+	12.3091	2.32e-05	0.0974	CCCACCCCGCTGCTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	61	72	+	11.6885	2.32e-05	0.0787	CTACCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	61	72	+	11.6885	2.32e-05	0.0787	CTACCGGAAGTT
SP1	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	25	+	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	23	33	+	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	28	38	+	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	28	38	+	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	41	+	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	41	+	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	41	+	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	41	+	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	45	55	+	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	53	63	-	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	53	63	-	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	60	70	-	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	82	92	-	13	2.32e-05	0.00846	TCTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	90	100	-	13	2.32e-05	0.00846	GGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	90	100	-	13	2.32e-05	0.00846	GGCCCGCCCAC
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	13.2459	2.32e-05	0.333	GCCACGTGGC
Npas2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	13.2459	2.32e-05	0.333	GCCACGTGGC
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	13	27	-	12.8654	2.32e-05	0.0988	ACGGTGACCAATGGG
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	13	26	+	12.0769	2.32e-05	0.446	AAAGCTACGTCATA
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	86	99	-	12.0769	2.32e-05	0.446	AAAGCTACGTCATA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	4	14	+	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	99	109	-	12.6034	2.32e-05	0.215	ACTTGTGGTTT
PAX5	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	32	50	-	12.371	2.32e-05	0.137	GACCGCGGCCGGGCGGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	65	83	+	12.371	2.32e-05	0.137	GACCGCGGCCGGGCGGGGC
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	17	31	+	11.7286	2.32e-05	0.0969	TCAGGGCTGAGGTCA
EHF	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	23	-	12.3934	2.32e-05	0.107	CAGCAGGAAGTG
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	30	44	-	11.9394	2.32e-05	0.252	TTACTTTTACTTTTC
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	99	113	-	11.9394	2.32e-05	0.252	TTACTTTTACTTTTC
TAL1::TCF3	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	11	22	+	12.9551	2.32e-05	0.99	AGGCCAGCTGGT
TAL1::TCF3	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	24	-	12.9551	2.32e-05	0.99	CCACCAGCTGGC
TAL1::TCF3	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	91	102	+	12.9551	2.32e-05	0.99	CCACCAGCTGGC
TAL1::TCF3	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	104	-	12.9551	2.32e-05	0.99	AGGCCAGCTGGT
Mitf	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	19	28	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	57	66	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	49	58	-	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	49	58	-	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	68	77	-	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	85	94	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	85	94	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	85	94	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	85	94	+	11.8673	2.32e-05	0.151	CGTCACGCGG
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	53	62	+	11.8415	2.32e-05	0.474	AAAATCACAG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	+	13.1489	2.32e-05	0.169	GGTGACTCACT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	43	63	+	11.4677	2.32e-05	0.153	CGTTCCTTTTTTTTTTTTTTT
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	36	47	-	12.431	2.32e-05	0.33	GAGACCACGCTC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	36	47	-	12.431	2.32e-05	0.33	GAGACCACGCTC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	33	43	+	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	33	43	+	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	33	43	+	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	33	43	+	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	33	43	+	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	72	82	-	12.3455	2.33e-05	0.0116	ACGCTTGCGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	12.7308	2.33e-05	0.123	ATCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	12.7308	2.33e-05	0.123	ATCACGTGGC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	12.7308	2.33e-05	0.123	ATCACGTGGC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	35	54	-	7.11009	2.33e-05	0.0468	ACTCAACCCACCCCAAGTAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	12.2	2.33e-05	0.189	GCCACGTGAC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	12.2	2.33e-05	0.189	GCCACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	+	11.9808	2.33e-05	0.145	CGCACGTGAG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	-	11.9808	2.33e-05	0.145	CGCACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	-	11.9808	2.33e-05	0.145	CGCACGTGAG
BHLHE41	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	-	11.9808	2.33e-05	0.145	CGCACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	-	11.9808	2.33e-05	0.145	CGCACGTGAG
Tcf21	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	11	24	+	9.98684	2.33e-05	0.56	AGGCCAGCTGGTGG
Tcf21	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	11	24	-	9.98684	2.33e-05	0.56	CCACCAGCTGGCCT
Tcf21	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	91	104	+	9.98684	2.33e-05	0.56	CCACCAGCTGGCCT
Tcf21	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	91	104	-	9.98684	2.33e-05	0.56	AGGCCAGCTGGTGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	7	17	-	13.0328	2.33e-05	0.042	CAGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	7	17	-	13.0328	2.33e-05	0.042	CAGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	7	17	-	13.0328	2.33e-05	0.042	CAGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	7	17	-	13.0328	2.33e-05	0.042	CAGGAAGCGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	7	17	-	13.0328	2.33e-05	0.042	CAGGAAGCGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	97	107	-	13.0328	2.33e-05	0.042	CCGGAAGCCAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	97	107	-	13.0328	2.33e-05	0.042	CCGGAAGCCAA
NHLH1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	-	12.8793	2.33e-05	0.102	AACAGCTGCT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	+	12.8793	2.33e-05	0.102	AACAGCTGCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	-	12.8793	2.33e-05	0.102	AACAGCTGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	-	12.5738	2.33e-05	0.0554	TGCCGGGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	-	12.5738	2.33e-05	0.0554	TGCCGGGCGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	-	12.5738	2.33e-05	0.0554	TGCCGGGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	-	12.5738	2.33e-05	0.0554	TGCCGGGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	-	12.5738	2.33e-05	0.0554	TGCCGGGCGGGCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	81	91	+	12.8788	2.33e-05	0.0428	GGCAACACCCA
RXRB	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	103	-	4.72727	2.33e-05	0.387	AGGGCCAAAGGTTG
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	59	+	4.72727	2.33e-05	0.387	AGGGCCAAAGGTTG
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	59	+	4.72727	2.33e-05	0.387	AGGGCCAAAGGTTG
RXRB	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	99	112	+	4.72727	2.33e-05	0.387	GGGTTGGAAGGTCG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	-	12.623	2.33e-05	0.064	CCCCCCGCGGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	-	12.623	2.33e-05	0.064	AGCCTCAAGGGCT
SOX8	WILDTYPE__Lincrna.noflip.NA__chr10:10836857..10836971,-__105.1.0.0	31	46	+	-7.28788	2.33e-05	1	GAAAATGTGGAGTGTC
SOX8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	80	95	+	-7.28788	2.33e-05	1	GAAAATGTGGAGTGTC
SOX8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	80	95	+	-7.28788	2.33e-05	1	GAAAATGTGGAGTGTC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	59	-	11.8364	2.33e-05	0.0884	TAGGCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	59	-	11.8364	2.33e-05	0.0884	TAGGCGGAAGTG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	34	48	-	11.0328	2.33e-05	0.0399	AGCCCCGCCCCTTCC
Foxa2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	95	+	13.02	2.33e-05	0.884	TGTTTACATTCC
Foxa2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	95	+	13.02	2.33e-05	0.884	TGTTTACATTCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	19	30	+	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	19	30	+	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	19	30	+	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	36	+	12.5526	2.33e-05	0.0204	GCCCCTCCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	36	+	12.5526	2.33e-05	0.0204	GCCCCTCCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	41	52	-	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	41	52	-	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	41	52	-	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	85	96	-	12.5526	2.33e-05	0.0204	AACCCCCCCCCC
OLIG1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	12.8654	2.33e-05	1	AGCATATGGC
OLIG1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	12.8654	2.33e-05	1	AGCATATGGC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	+	12.5	2.33e-05	0.0554	CGCCTCGCGGGCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	15	28	+	11.431	2.33e-05	0.0235	GCTCCCGCCCCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	62	76	+	9.60345	2.33e-05	0.0302	CCCCGCCCCCGGAAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	62	76	+	9.60345	2.33e-05	0.0302	CCCCGCCCCCGGAAC
SP2	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	23	37	+	12.5172	2.33e-05	0.00736	TCTCCGCCCTCAGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	35	49	+	12.5172	2.33e-05	0.00736	GGCCCACCCTCCGCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	78	92	+	12.5172	2.33e-05	0.00736	CGCCCGCCCACGAGC
SP2	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	15	29	-	12.5172	2.33e-05	0.00736	TCCCCTCCTCCTAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	51	65	-	12.5172	2.33e-05	0.00736	GCCGCGCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	51	65	-	12.5172	2.33e-05	0.00736	GCCGCGCCCCCGCCT
SP2	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	66	80	-	12.5172	2.33e-05	0.00736	GGCCCACCCTCCGCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	66	80	-	12.5172	2.33e-05	0.00736	CGCCCGCCCACGAGC
SP2	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	78	92	-	12.5172	2.33e-05	0.00736	TCTCCGCCCTCAGCC
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	27	39	-	10.082	2.33e-05	0.673	TTGCAACAGCTTG
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	101	113	+	10.082	2.33e-05	0.673	TTGCAACAGCTTG
EGR1	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	62	75	+	12.3846	2.34e-05	0.0132	TCCCCGCCTCCAGA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	64	77	-	12.3846	2.34e-05	0.0132	CCTCCGCCGCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	64	77	-	12.3846	2.34e-05	0.0132	CCTCCGCCGCCTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	64	77	-	12.3846	2.34e-05	0.0132	CCTCCGCCGCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	64	77	-	12.3846	2.34e-05	0.0132	CCTCCGCCGCCTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	64	77	-	12.3846	2.34e-05	0.0132	CCTCCGCCGCCTTC
TP63	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	29	46	+	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	35	52	+	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	35	52	+	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	35	52	+	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	33	50	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	33	50	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	63	80	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	69	86	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	69	86	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TP63	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	69	86	-	2.96552	2.34e-05	0.559	AGCGAGTGCAGACACGTG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	+	12.8	2.34e-05	0.0548	AGCCTCCAGGCG
INSM1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	87	98	+	12.5918	2.34e-05	0.146	GGGCAGGGGCCA
NR2F1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	42	54	+	13.102	2.34e-05	0.367	TCGAGGTCAGGGG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	11	21	+	12.569	2.34e-05	0.0129	CACACTCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	53	63	+	12.569	2.34e-05	0.0129	ACCACGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	20	30	-	12.569	2.34e-05	0.0129	ACCCCGCCCAT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	20	30	-	12.569	2.34e-05	0.0129	ACCCCGCCCAT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	20	30	-	12.569	2.34e-05	0.0129	ACCCCGCCCAT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	20	30	-	12.569	2.34e-05	0.0129	ACCCCGCCCAT
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	28	45	+	12.6889	2.34e-05	0.965	ACCCTGTCAGCATTAACT
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	28	45	+	12.6889	2.34e-05	0.965	ACCCTGTCAGCATTAACT
Crx	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	15	25	+	12.8448	2.34e-05	1	AAGAGGATTTG
EGR4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	5	20	+	12.1636	2.34e-05	0.0374	CTCCGCCCCTGCCCTG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	36	51	+	12.1636	2.34e-05	0.0374	CTCCGCCCCTGCCCTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	36	51	+	12.1636	2.34e-05	0.0374	CTCCGCCCCTGCCCTG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	72	87	+	12.1636	2.34e-05	0.0374	CCCCGCCCCCGGCCAT
EGR4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	95	110	-	12.1636	2.34e-05	0.0374	CTCCGCCCCTGCCCTG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	43	55	-	12.2571	2.34e-05	0.729	AGACCAGATGTGA
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	43	55	-	12.2571	2.34e-05	0.729	AGACCAGATGTGA
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	60	72	+	12.2571	2.34e-05	0.729	AGACCAGATGTGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	+	13.4545	2.34e-05	0.148	GCTGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	+	13.4545	2.34e-05	0.148	GCTGAGTCATC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	30	43	-	9.42553	2.34e-05	0.0959	GCCAGCCCGCGGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	30	43	-	9.42553	2.34e-05	0.0959	GCCAGCCCGCGGTG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	78	91	+	9.42553	2.34e-05	0.0959	GCCAGCCCGCGGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	78	91	+	9.42553	2.34e-05	0.0959	GCCAGCCCGCGGTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	6	26	-	11.6531	2.34e-05	0.0106	GGGGCGGGGAGGGGCGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	6	26	-	11.6531	2.34e-05	0.0106	GGGGCGGGGAGGGGCGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	36	56	-	11.6531	2.34e-05	0.0106	GAAGGTCAGAGGAAGGGGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	5	25	+	11.6531	2.34e-05	0.0106	CGGGGAGGAGGGGACGGGGTC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	12	32	+	11.6531	2.34e-05	0.0106	GATGAAGGCGGGAGCTGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	12	32	+	11.6531	2.34e-05	0.0106	GATGAAGGCGGGAGCTGAGGG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	4	16	-	11.2424	2.34e-05	0.225	AGGGGGAATCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	4	16	-	11.2424	2.34e-05	0.225	AGGGGGAATCCCG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	42	54	+	11.2424	2.34e-05	0.225	AGGGAGACCCCCA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	7	17	+	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	7	17	+	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	12	22	+	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	21	31	-	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	35	45	+	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	70	80	-	13.2931	2.34e-05	0.0448	CCGCGGGAACC
E2F4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	93	103	-	13.2931	2.34e-05	0.0448	CCGCGGGAACC
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	24	37	-	8.7449	2.34e-05	0.0605	GGGGCGGGCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	54	67	+	8.7449	2.34e-05	0.0605	GGGGCGGGCGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	33	42	+	12.5612	2.34e-05	0.0138	TGGGTGGGTC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	26	35	-	12.5612	2.34e-05	0.0138	TGGGTGGGTC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	92	101	-	12.5612	2.34e-05	0.0138	TGGGTGGGTC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	17	33	+	7.52727	2.34e-05	0.0175	TGGACCACCCCCCCCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	17	33	+	7.52727	2.34e-05	0.0175	TGGACCACCCCCCCCCC
SP4	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	28	44	+	7.52727	2.34e-05	0.0175	CCGACCACGCCTCTTGG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	39	55	-	7.52727	2.34e-05	0.0175	TCTGCCCCGCCCTCCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	62	78	+	7.52727	2.34e-05	0.0175	TCTGCCCCGCCCTCCAG
SP4	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	71	87	-	7.52727	2.34e-05	0.0175	CCGACCACGCCTCTTGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	4	14	+	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	4	14	+	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	4	14	+	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	4	14	+	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	27	37	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	27	37	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	27	37	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	27	37	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	27	37	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	77	87	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	77	87	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	77	87	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
Gabpa	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	101	111	-	13.0164	2.34e-05	0.042	GCGGAAGCGCT
GATA2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	47	60	-	13.2	2.34e-05	0.951	CACTCCTTATCTCA
GATA2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	47	60	-	13.2	2.34e-05	0.951	CACTCCTTATCTCA
GATA2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	47	60	-	13.2	2.34e-05	0.951	CACTCCTTATCTCA
GATA2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	47	60	-	13.2	2.34e-05	0.951	CACTCCTTATCTCA
GATA2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	47	60	-	13.2	2.34e-05	0.951	CACTCCTTATCTCA
Rfx1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	19	32	+	12.1897	2.34e-05	0.148	GGCTCCGCGGCAAC
Rfx1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	83	96	-	12.1897	2.34e-05	0.148	GGCTCCGCGGCAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	21	38	+	-9.60526	2.34e-05	0.0319	GGAGGAGCGGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	21	38	+	-9.60526	2.34e-05	0.0319	GGAGGAGCGGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	21	38	+	-9.60526	2.34e-05	0.0319	GGAGGAGCGGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	21	38	+	-9.60526	2.34e-05	0.0319	GGAGGAGCGGGAGGAGGC
MLX	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	12.5286	2.34e-05	0.205	ATCACGTGAG
MLX	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	12.5286	2.34e-05	0.205	ATCACGTGAG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	2	16	+	12.2909	2.34e-05	0.0974	GCCGCCCTGCCGAGC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	99	113	-	12.2909	2.34e-05	0.0974	GCCGCCCTGCCGAGC
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	56	66	-	13.0962	2.34e-05	0.265	CAAATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	56	66	-	13.0962	2.34e-05	0.265	CAAATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	56	66	-	13.0962	2.34e-05	0.265	CAAATGACTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	56	66	-	13.0962	2.34e-05	0.265	CAAATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	49	59	+	13.0962	2.34e-05	0.265	CAAATGACTCA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	21	31	-	13.2586	2.34e-05	0.0415	AAGCGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	21	31	-	13.2586	2.34e-05	0.0415	AAGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	38	48	-	13.2586	2.34e-05	0.0415	ACGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	38	48	-	13.2586	2.34e-05	0.0415	ACGCGGGAGGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	44	54	-	13.2586	2.34e-05	0.0415	AAGCGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	56	66	-	13.2586	2.34e-05	0.0415	GCGCGGGAGGT
E2F6	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	67	77	+	13.2586	2.34e-05	0.0415	ACGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	94	104	+	13.2586	2.34e-05	0.0415	AAGCGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	94	104	+	13.2586	2.34e-05	0.0415	AAGCGGGAGGC
SPDEF	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	26	-	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	26	36	+	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	51	-	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	51	-	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	65	75	+	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	89	-	12.6909	2.34e-05	0.206	AGCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	89	-	12.6909	2.34e-05	0.206	AGCCGGAAGTG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	-	12.5574	2.34e-05	0.0554	AGCCCCGAAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	-	12.5574	2.34e-05	0.0554	AGCCCCGAAGGCC
E2F7	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	34	47	-	0.442623	2.34e-05	1	GTTACCCACCAAAA
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	69	83	+	12.3636	2.34e-05	0.273	AGAAAGGGAAAGACT
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	31	45	-	12.3636	2.34e-05	0.273	AGAAAGGGAAAGACT
ZNF740	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	72	81	+	12.5229	2.34e-05	0.042	CACCCCCCAT
ZNF740	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	34	43	-	12.5229	2.34e-05	0.042	CACCCCCCAT
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	-	13.1277	2.35e-05	0.169	GATGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	-	13.1277	2.35e-05	0.169	GATGACTCAGC
CEBPE	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	+	12.4	2.35e-05	0.702	GTGGCGCAAC
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	94	108	+	11.2459	2.35e-05	0.324	ATGACATAGCAGGAA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	44	60	-	11.9592	2.35e-05	0.338	GGGTCACGTGGCGGAAA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	44	60	-	11.9592	2.35e-05	0.338	GGGTCACGTGGCGGAAA
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	1	14	-	12.9091	2.35e-05	0.0362	CCCCCTCGGGCCTC
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	24	34	+	13.0172	2.35e-05	0.446	CAATCACTGCG
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	77	87	-	13.0172	2.35e-05	0.446	CAATCACTGCG
HEY1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	13	2.35e-05	0.0969	CGCACGTGCA
HEY1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	13	2.35e-05	0.0969	CGCACGTGCA
ATF7	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	33	46	+	10.3143	2.35e-05	0.123	CGCTGACGTAACCT
ATF7	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	28	41	-	10.3143	2.35e-05	0.123	CGCTGACGTAACCT
ATF7	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	74	87	+	10.3143	2.35e-05	0.123	CGCTGACGTAACCT
ATF7	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	69	82	-	10.3143	2.35e-05	0.123	CGCTGACGTAACCT
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	86	97	+	10.2449	2.35e-05	0.0985	CGTGACGTCAGA
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	18	29	-	10.2449	2.35e-05	0.0985	CGTGACGTCAGA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	16	27	+	12.5395	2.35e-05	0.0204	GACACGCCTCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	16	27	+	12.5395	2.35e-05	0.0204	GACACGCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	36	47	+	12.5395	2.35e-05	0.0204	GCCACTCCTCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	36	47	+	12.5395	2.35e-05	0.0204	GCCACTCCTCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	36	47	+	12.5395	2.35e-05	0.0204	GCCACTCCTCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	36	47	+	12.5395	2.35e-05	0.0204	GCCACTCCTCCC
SP8	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	88	99	-	12.5395	2.35e-05	0.0204	GACACGCCTCCA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	38	52	+	11.0164	2.35e-05	0.04	CGCCACGCCCCTGGG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	52	66	-	11.0164	2.35e-05	0.04	CGCCACGCCCCTGGG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	-	10.1429	2.35e-05	0.194	CGTGAGTCACG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	-	10.1429	2.35e-05	0.194	CGTGAGTCACG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	+	10.1429	2.35e-05	0.194	CGTGAGTCACG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	+	10.1429	2.35e-05	0.194	CGTGAGTCACG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	23	33	-	12.9636	2.35e-05	0.047	AGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	4	14	+	12.9636	2.35e-05	0.047	ACCCTCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	4	14	+	12.9636	2.35e-05	0.047	ACCCTCAGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	82	92	+	12.9636	2.35e-05	0.047	AGCCCCCGGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	38	51	+	11.4138	2.35e-05	0.0236	CGTCACGCCCCTGG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	53	66	-	11.4138	2.35e-05	0.0236	CGTCACGCCCCTGG
EGR3	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	37	51	-	9.58621	2.35e-05	0.0302	GCGCGCCCCCGCGGT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	44	58	-	9.58621	2.35e-05	0.0302	CCCCGCCCACCCTGA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	44	58	-	9.58621	2.35e-05	0.0302	CCCCGCCCACCCTGA
EGR3	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	64	78	+	9.58621	2.35e-05	0.0302	GCGCGCCCCCGCGGT
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	6	19	-	10.8525	2.35e-05	0.176	CGCCTCCCGCGAGG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	6	19	-	10.8525	2.35e-05	0.176	CGCCTCCCGCGAGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	6	19	-	10.8525	2.35e-05	0.176	CGCCTCCCGCGAGG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	6	19	-	10.8525	2.35e-05	0.176	CGCCTCCCGCGAGG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	6	19	-	10.8525	2.35e-05	0.176	CGCCTCCCGCGAGG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	78	92	+	12.8592	2.35e-05	0.341	CCATGGTAAACAGAT
FOXP1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	23	37	-	12.8592	2.35e-05	0.341	CCATGGTAAACAGAT
USF1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	65	75	-	12.9184	2.35e-05	0.114	ACCATGTGGCC
USF1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	40	50	+	12.9184	2.35e-05	0.114	ACCATGTGGCC
IRF7	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	72	85	+	11.2581	2.35e-05	0.586	AGGAAATTGAAACT
ETV1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.7455	2.35e-05	0.0857	AGCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.7455	2.35e-05	0.0857	AGCGGAAGTG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	81	91	-	13.1837	2.35e-05	0.238	ACTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	81	91	-	13.1837	2.35e-05	0.238	ACTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	101	111	-	13.1837	2.35e-05	0.238	ACTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	101	111	-	13.1837	2.35e-05	0.238	ACTTCCTGGAA
Foxd3	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	41	52	-	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	55	66	+	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	55	66	+	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	63	74	+	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	63	74	+	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	63	74	+	12.837	2.35e-05	1	TTTTGTTTTTTT
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	63	74	+	12.837	2.35e-05	1	TTTTGTTTTTTT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	59	+	13.2449	2.35e-05	0.0856	CTCAGGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	59	+	13.2449	2.35e-05	0.0856	CTCAGGTGACC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	+	12.6066	2.35e-05	0.064	AGCCTCCCAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	-	12.6066	2.35e-05	0.064	AGCCTCCCAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	-	12.6066	2.35e-05	0.064	AGCCTCCCAGGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	6	16	+	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	12	22	-	12.3273	2.35e-05	0.0116	GCGGCTGCCCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	23	33	+	12.3273	2.35e-05	0.0116	GCGCCGGTGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	14	24	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.1.0	19	29	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.0.0	19	29	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	49	59	+	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	59	69	+	12.3273	2.35e-05	0.0116	GCGGCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	59	69	+	12.3273	2.35e-05	0.0116	GCGGCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	59	69	+	12.3273	2.35e-05	0.0116	GCGGCTGCCCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	56	66	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	66	76	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	66	76	-	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	91	101	+	12.3273	2.35e-05	0.0116	GCGCAGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	82	92	-	12.3273	2.35e-05	0.0116	GCGCCGGTGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	93	103	+	12.3273	2.35e-05	0.0116	GCGGCTGCCCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	19	30	-	12.7	2.35e-05	0.217	CGGGACCACAGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	19	30	-	12.7	2.35e-05	0.217	CGGGACCACAGA
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	19	30	-	12.7	2.35e-05	0.217	CGGGACCACAGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	19	30	-	12.7	2.35e-05	0.217	CGGGACCACAGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	19	30	-	12.7	2.35e-05	0.217	CGGGACCACAGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	14	28	-	11.7	2.35e-05	0.0969	GGGGGGCAGGGTGGA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	14	28	-	11.7	2.35e-05	0.0969	GGGGGGCAGGGTGGA
NR2C2	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	31	45	+	11.7	2.35e-05	0.0969	GGGGGGCAGGGTGGA
NR2C2	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	70	84	-	11.7	2.35e-05	0.0969	GGGGGGCAGGGTGGA
NR2C2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	87	101	+	11.7	2.35e-05	0.0969	GGGGGGCAGGGTGGA
ELF1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	38	49	+	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	43	54	+	11.8	2.35e-05	0.0884	ACACCGGAAGCG
ELF1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	54	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	61	72	+	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	72	-	11.8	2.35e-05	0.0884	ACACCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	77	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	77	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	77	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	77	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	77	-	11.8	2.35e-05	0.0884	CCGCCGGAAGTG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	43	53	+	13.551	2.35e-05	0.115	CACAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	43	53	+	13.551	2.35e-05	0.115	CACAGCTGGCG
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	43	54	+	12.9326	2.35e-05	0.99	GGTCCATCTGGT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	43	54	+	12.9326	2.35e-05	0.99	GGTCCATCTGGT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	105	114	-	13.2653	2.35e-05	0.0118	ACCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	105	114	-	13.2653	2.35e-05	0.0118	ACCCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	1	10	+	13.2653	2.35e-05	0.0118	ACCCCACCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	25	34	+	13.2653	2.35e-05	0.0118	ACCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	25	34	+	13.2653	2.35e-05	0.0118	ACCCCACCCT
SP4	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	61	77	-	7.50909	2.35e-05	0.0176	CGAGCCCCGCGCACTCC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	75	89	-	12.3788	2.35e-05	0.0759	CTCCCGCGGTGGCGG
MAX::MYC	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	39	49	+	12.6531	2.35e-05	0.285	GACCATGTGGC
MAX::MYC	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	66	76	-	12.6531	2.35e-05	0.285	GACCATGTGGC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	+	12.38	2.36e-05	0.744	GTTGCACAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	+	12.38	2.36e-05	0.744	GTTGCACAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	+	12.38	2.36e-05	0.744	GTTGCACAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	-	12.38	2.36e-05	0.744	GTTGCACAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	-	12.38	2.36e-05	0.744	GTTGCACAAC
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	30	41	+	4.07692	2.36e-05	0.764	TGAGAGCTGACA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	30	41	+	4.07692	2.36e-05	0.764	TGAGAGCTGACA
YY2	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	16	26	+	12.9697	2.36e-05	0.269	CTCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	89	99	-	12.9697	2.36e-05	0.269	CTCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	89	99	-	12.9697	2.36e-05	0.269	CTCCGCCATCT
Nr2f6	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	42	55	+	10.9545	2.36e-05	0.252	TAGCACAAAGGTCA
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	42	55	+	10.9545	2.36e-05	0.252	TAGCACAAAGGTCA
Nr2f6(var.2)	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	55	69	+	-0.671429	2.36e-05	0.656	GAGCTCAAGAGGGCA
Nr2f6(var.2)	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	46	60	-	-0.671429	2.36e-05	0.656	GAGCTCAAGAGGGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	34	48	+	12.5	2.36e-05	0.00742	CCCCCTCCTCACGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	34	48	+	12.5	2.36e-05	0.00742	CCCCCTCCTCACGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	57	71	+	12.5	2.36e-05	0.00742	CTTCCGCCCTCGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	57	71	+	12.5	2.36e-05	0.00742	CTTCCGCCCTCGCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	57	71	+	12.5	2.36e-05	0.00742	CTTCCGCCCTCGCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	81	95	+	12.5	2.36e-05	0.00742	CTTCCGCCCTCGCCT
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	94	110	-	9	2.36e-05	0.484	GGTCCTGCTCCGCCGCC
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	94	110	-	9	2.36e-05	0.484	GGTCCTGCTCCGCCGCC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	94	110	-	9	2.36e-05	0.484	GGTCCTGCTCCGCCGCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	22	39	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	33	50	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	33	50	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	51	68	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	63	80	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	63	80	-	-9.63158	2.36e-05	0.0319	GGAGGAGGAGGAGGAGGG
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	12.6034	2.36e-05	0.16	GCCACGTGGC
HEY2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	12.6034	2.36e-05	0.16	GCCACGTGGC
Hnf4a	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	74	89	+	6.85455	2.36e-05	0.312	AGGGTCAGAGGCCGCC
Hnf4a	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	26	41	-	6.85455	2.36e-05	0.312	AGGGTCAGAGGCCGCC
HES7	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	79	+	7.08621	2.36e-05	0.189	CACCACGTGCCT
RARA::RXRA	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	71	87	+	11.949	2.36e-05	0.338	GGGTCGAGGCGAGGCCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	28	44	-	11.949	2.36e-05	0.338	GGGTCGAGGCGAGGCCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	28	44	-	11.949	2.36e-05	0.338	GGGTCGAGGCGAGGCCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	28	44	-	11.949	2.36e-05	0.338	GGGTCGAGGCGAGGCCA
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	28	44	-	11.949	2.36e-05	0.338	GGGTCGAGGCGAGGCCA
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	16	30	-	12.9362	2.36e-05	0.311	AAAAATGAGGTAAGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	+	13.0364	2.36e-05	0.063	TGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	+	13.0364	2.36e-05	0.063	TGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	+	13.0364	2.36e-05	0.063	TGCCCGAGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	37	47	+	13.0364	2.36e-05	0.063	ACCCCGAGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	-	13.0364	2.36e-05	0.063	AGCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	-	13.0364	2.36e-05	0.063	AGCCGCCGGCA
GLIS3	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	87	100	+	7.31818	2.36e-05	0.379	CACCCTCCTCGAAG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	15	28	-	7.31818	2.36e-05	0.379	CACCCTCCTCGAAG
SP1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	14	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	2	12	-	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	21	31	-	12.9615	2.36e-05	0.00852	CCCCCTCCCTT
SP1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	26	36	-	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	37	47	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	37	47	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	37	47	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	37	47	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	42	52	+	12.9615	2.36e-05	0.00852	CCCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	42	52	+	12.9615	2.36e-05	0.00852	CCCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	57	67	-	12.9615	2.36e-05	0.00852	CCCCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	57	67	-	12.9615	2.36e-05	0.00852	CCCCCTCCCTT
SP1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	68	78	-	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	89	+	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	101	111	-	12.9615	2.36e-05	0.00852	CCCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	101	111	-	12.9615	2.36e-05	0.00852	CCCCCACCCAC
JUN	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	7	19	-	12.898	2.36e-05	0.301	GGAATGAGGCAAT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	29	42	-	12.3654	2.36e-05	0.0133	GGCCCGCTCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	29	42	-	12.3654	2.36e-05	0.0133	GGCCCGCTCCCGCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	29	42	-	12.3654	2.36e-05	0.0133	GGCCCGCTCCCGCT
EGR1	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	33	46	-	12.3654	2.36e-05	0.0133	CCTACGCCCCCAGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	69	82	+	12.3654	2.36e-05	0.0133	CCTACGCCCCCAGA
EGR1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	73	86	+	12.3654	2.36e-05	0.0133	GGCCCGCTCCCGCT
ZNF143	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	39	54	+	5.63793	2.36e-05	0.294	GCCCCACCATGCACCG
ZNF143	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	61	76	-	5.63793	2.36e-05	0.294	GCCCCACCATGCACCG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	89	104	-	5.63793	2.36e-05	0.294	GCCCCACCATGCACCG
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	49	62	-	10.3	2.36e-05	0.123	CGATGAAGTCATAG
Tcf12	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	20	30	-	13.5102	2.36e-05	0.151	AGCAGCTGCGT
Tcf12	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	95	+	13.5102	2.36e-05	0.151	AGCAGCTGCGT
PITX3	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	35	43	-	12.2692	2.36e-05	1	ATTAATCCC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	18	29	+	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	18	29	+	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	18	29	+	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	18	29	+	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	64	-	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	91	-	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	91	-	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	91	-	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	91	-	11.6066	2.36e-05	0.0787	AAACAGGAAGTT
ERF	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	12.8	2.36e-05	0.0836	ACCGGATGTC
ERF	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	12.8	2.36e-05	0.0836	ACCGGATGTC
ETV6	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	13	22	+	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	27	36	+	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	24	33	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	40	49	+	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	34	43	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	34	43	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	61	70	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	66	75	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	82	91	+	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	79	88	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	93	102	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	93	102	-	12.9231	2.36e-05	0.0754	GGCGGAAGCG
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	10	20	+	12.8636	2.36e-05	0.0428	GGTCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	33	43	-	12.8636	2.36e-05	0.0428	GGTCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	33	43	-	12.8636	2.36e-05	0.0428	GGTCCCACCCA
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	59	72	-	8.71429	2.36e-05	0.0605	GAGGGCCAAAGGAG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	59	72	-	8.71429	2.36e-05	0.0605	GAGGGCCAAAGGAG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	62	73	+	12.5263	2.36e-05	0.0205	CCCACCCCCATC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	13	27	-	9.56897	2.37e-05	0.0302	CGCCGCCCACCCCAA
EGR3	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	35	49	-	9.56897	2.37e-05	0.0302	AGCCGCCCACCCTCC
EGR3	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	35	49	-	9.56897	2.37e-05	0.0302	AGCCGCCCACCCTCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	50	64	+	9.56897	2.37e-05	0.0302	TTCCTCCCCCGCCTC
EGR3	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	42	56	-	9.56897	2.37e-05	0.0302	CGGCGCCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	51	65	-	9.56897	2.37e-05	0.0302	TTCCTCCCCCGCCTC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	51	65	-	9.56897	2.37e-05	0.0302	TTCCTCCCCCGCCTC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	51	65	-	9.56897	2.37e-05	0.0302	TTCCTCCCCCGCCTC
EGR3	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	67	81	+	9.56897	2.37e-05	0.0302	AGCCGCCCACCCTCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	69	83	-	9.56897	2.37e-05	0.0302	CACCGCCCCCCCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	69	83	-	9.56897	2.37e-05	0.0302	CACCGCCCCCCCGGC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	86	100	+	9.56897	2.37e-05	0.0302	CGCCGCCCACCCCAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	16	36	-	11.6327	2.37e-05	0.0106	TGTGGCTGGGGTGGGGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	23	43	-	11.6327	2.37e-05	0.0106	AAGGAAAGGGGGGGGGAAAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	27	47	-	11.6327	2.37e-05	0.0106	GAGGAAGAGGAGGAGGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	58	78	-	11.6327	2.37e-05	0.0106	GGGGGGAAGGGGGAGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	68	88	-	11.6327	2.37e-05	0.0106	GAGGAAGAGGAGGAGGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	68	88	-	11.6327	2.37e-05	0.0106	GAGGAAGAGGAGGAGGAGGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	33	53	+	11.6327	2.37e-05	0.0106	TGTGGCTGGGGTGGGGGAAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	37	57	+	11.6327	2.37e-05	0.0106	GGGGGGAAGGGGGAGGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	86	106	+	11.6327	2.37e-05	0.0106	GGAGGCGGCAGAGACGGTGGC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	28	38	+	13.5306	2.37e-05	0.145	AAATGAGTCAT
FEV	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	12.8077	2.37e-05	0.0872	AACGGAAGTA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	12.8077	2.37e-05	0.0872	AACGGAAGTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	12.8077	2.37e-05	0.0872	AACGGAAGTA
RELA	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	32	41	-	12.9388	2.37e-05	0.189	GGGGGATTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	28	44	-	7.49091	2.37e-05	0.0177	TCATACCCGCCCACTTC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	59	73	-	12.2727	2.37e-05	0.0974	TCCCTCCCGCCGCGG
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	42	52	-	13.3269	2.37e-05	1	TAAAATCCACA
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	72	82	+	13.3269	2.37e-05	1	TAAAATCCACA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	56	70	+	11.9545	2.37e-05	0.241	CCCACTGACTCAGCC
MYF6	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	-	12.6515	2.37e-05	1	CACAGCTGTT
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	-	12.6515	2.37e-05	1	CACAGCTGTT
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	-	12.6515	2.37e-05	1	CACAGCTGTT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	82	92	-	13.4364	2.37e-05	0.149	TATGAGTCATC
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	41	55	-	12.3455	2.37e-05	0.273	AAAAAGGGAGAGGCA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	18	32	-	11.6857	2.37e-05	0.0969	GTGGGTCGAGGGGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	72	86	-	11.6857	2.37e-05	0.0969	CCGGGGCGGAGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	31	+	12.7818	2.37e-05	0.0548	TGCCCGAGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	31	+	12.7818	2.37e-05	0.0548	TGCCCGAGGGGA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	66	77	-	12.7818	2.37e-05	0.0548	CGCCCCCCGGCC
SP8	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	26	37	+	12.5132	2.37e-05	0.0206	GACCCACCCACC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	13	23	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	13	23	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	36	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	36	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	36	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	28	38	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	28	38	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	30	40	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	38	48	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	83	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	75	85	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	75	85	+	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	101	111	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	101	111	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	101	111	-	12.9423	2.37e-05	0.00852	CCTCCGCCCAC
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	19	35	+	11.5132	2.37e-05	0.537	TCGCGTGCGTACGTCGT
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	19	35	+	11.5132	2.37e-05	0.537	TCGCGTGCGTACGTCGT
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	81	97	+	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	81	97	+	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	81	97	+	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	81	97	+	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	81	97	+	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
PAX1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	18	34	-	8.98182	2.37e-05	0.484	GGACACGGGTCGCTGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	+	12.5246	2.37e-05	0.0554	CGCCCTTGGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	+	12.5246	2.37e-05	0.0554	CGCCCTTGGGGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	5	15	+	13.2414	2.37e-05	0.0448	GCGCGCGAAGG
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	70	81	+	12.7414	2.37e-05	0.365	CCGCCCACCCAA
YY2	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	52	62	+	12.9545	2.37e-05	0.269	CACCGCCATCT
YY2	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	43	53	-	12.9545	2.37e-05	0.269	CACCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	62	72	+	12.9545	2.37e-05	0.269	CACCGCCATCT
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	62	72	+	12.9545	2.37e-05	0.269	CACCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	62	72	+	12.9545	2.37e-05	0.269	CACCGCCATCT
YY2	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	53	63	-	12.9545	2.37e-05	0.269	CACCGCCATCT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	70	84	-	12.8269	2.37e-05	0.0988	GCCCGGACCAATGGC
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	70	84	-	12.8269	2.37e-05	0.0988	GCCCGGACCAATGGC
SPIC	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	79	92	+	12.5211	2.37e-05	0.192	GAAATGAGTAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	23	36	-	12.5211	2.37e-05	0.192	GAAATGAGTAAGAA
Myod1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	24	+	13.449	2.37e-05	0.12	CGCACCTGTGCCT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	91	103	-	13.449	2.37e-05	0.12	CGCACCTGTGCCT
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	91	103	-	13.449	2.37e-05	0.12	CGCACCTGTGCCT
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	91	103	-	13.449	2.37e-05	0.12	CGCACCTGTGCCT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	91	103	-	13.449	2.37e-05	0.12	CGCACCTGTGCCT
RFX5	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	+	9.41379	2.37e-05	0.157	CATTGCCCGGGCAACC
RFX5	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	-	9.41379	2.37e-05	0.157	CATTGCCCGGGCAACC
SP3	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	8	18	+	12.4959	2.37e-05	0.014	ACCACTCCCCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	20	30	+	12.4959	2.37e-05	0.014	ACCACCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	30	+	12.4959	2.37e-05	0.014	ACCACCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	80	90	+	12.4959	2.37e-05	0.014	ACCACTCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	25	35	-	12.4959	2.37e-05	0.014	ACCACTCCCCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	33	50	+	-9.65789	2.37e-05	0.0319	TGGGGGAGGGCAGGAGGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	33	50	+	-9.65789	2.37e-05	0.0319	TGGGGGAGGGCAGGAGGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	33	50	-	-9.65789	2.37e-05	0.0319	TGGGGGAGGGCAGGAGGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	33	50	-	-9.65789	2.37e-05	0.0319	TGGGGGAGGGCAGGAGGT
ELF3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	28	40	-	11.0517	2.37e-05	0.125	AAACAGGAAGTGT
ELF3	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	55	67	-	11.0517	2.37e-05	0.125	AAACAGGAAGTGT
ELF3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	75	87	+	11.0517	2.37e-05	0.125	AAACAGGAAGTGT
ELF4	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	43	54	+	11.5902	2.37e-05	0.0787	ACACCGGAAGCG
ELF4	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	72	-	11.5902	2.37e-05	0.0787	ACACCGGAAGCG
ZBTB33	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	10	24	-	12.3636	2.37e-05	0.0759	GGCTCGCGCGCTCTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	16	30	+	12.3636	2.37e-05	0.0759	TTCTCGCGTGCGTAC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	16	30	+	12.3636	2.37e-05	0.0759	TTCTCGCGTGCGTAC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	16	30	+	12.3636	2.37e-05	0.0759	TTCTCGCGTGCGTAC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	16	30	+	12.3636	2.37e-05	0.0759	TTCTCGCGTGCGTAC
KLF16	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	56	66	+	12.5345	2.38e-05	0.0129	CCCACGCCCTC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	48	58	-	12.5345	2.38e-05	0.0129	CCCCCGCCCAT
KLF16	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	49	59	-	12.5345	2.38e-05	0.0129	CCCACGCCCTC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	67	77	-	12.5345	2.38e-05	0.0129	CCCACGCCCTC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	13.2885	2.38e-05	0.22	GTCACGTGCG
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	13.2885	2.38e-05	0.22	GTCACGTGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	68	+	9.38298	2.38e-05	0.0959	GCCCCCCCCCCGTG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	17	27	-	12.3091	2.38e-05	0.0117	GCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	17	27	-	12.3091	2.38e-05	0.0117	GCGCTCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	17	27	-	12.3091	2.38e-05	0.0117	GCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	17	27	-	12.3091	2.38e-05	0.0117	GCGCTCGCGCC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	53	67	+	10.7286	2.38e-05	0.1	GACCCGCCGCGGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	53	67	+	10.7286	2.38e-05	0.1	GACCCGCCGCGGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	53	67	+	10.7286	2.38e-05	0.1	GACCCGCCGCGGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	53	67	+	10.7286	2.38e-05	0.1	GACCCGCCGCGGCGC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	-	12.4655	2.38e-05	0.0554	AGCCTCAAGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	+	12.4655	2.38e-05	0.0554	CGCCCTTGGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	+	12.4655	2.38e-05	0.0554	CGCCCTTGGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	-	12.4655	2.38e-05	0.0554	GCCCCCAAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	-	12.4655	2.38e-05	0.0554	GCCCCCAAGGGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	+	12.8276	2.38e-05	0.102	GGCAGCTGCC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	-	12.8276	2.38e-05	0.102	GGCAGCTGCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	23	37	+	9.55172	2.38e-05	0.0302	CCACGCCCACTCTGC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	34	48	+	9.55172	2.38e-05	0.0302	CTCCGCCCCGGCCCT
EGR3	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	29	43	-	9.55172	2.38e-05	0.0302	CCACGCCCACTCTGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	30	44	-	9.55172	2.38e-05	0.0302	AAGCGCCCCCGCCTT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	30	44	-	9.55172	2.38e-05	0.0302	AAGCGCCCCCGCCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	30	44	-	9.55172	2.38e-05	0.0302	CTCCGCCCCGGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	30	44	-	9.55172	2.38e-05	0.0302	CTCCGCCCCGGCCCT
EGR3	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	72	86	+	9.55172	2.38e-05	0.0302	CCACGCCCACTCTGC
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	99	-	7.28788	2.38e-05	0.379	GACCCCCTAGGGCC
GLIS2	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	95	108	-	10.8197	2.38e-05	0.176	CGCCTCCCGCAACG
GLIS2	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	97	110	-	10.8197	2.38e-05	0.176	CGCCTCCCGCAACG
GLIS2	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	5	18	+	10.8197	2.38e-05	0.176	CGCCTCCCGCAACG
GLIS2	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	7	20	+	10.8197	2.38e-05	0.176	CGCCTCCCGCAACG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	92	102	-	13.2414	2.38e-05	0.042	TGGAGGGAAAG
CREB3	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	61	74	-	11.9857	2.38e-05	0.207	GTTTGACGTCATCA
CREB3	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	41	54	+	11.9857	2.38e-05	0.207	GTTTGACGTCATCA
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	57	69	+	12.6393	2.38e-05	0.359	CTATCTGTCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	76	88	+	12.6393	2.38e-05	0.359	CCGCCTGCCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	76	88	+	12.6393	2.38e-05	0.359	CCGCCTGCCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	76	88	+	12.6393	2.38e-05	0.359	CCGCCTGCCACCT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	6	23	+	-9.67105	2.38e-05	0.032	GGAGGGAGAGACGGCGGG
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	48	59	-	12.6818	2.38e-05	0.109	CAGCGTCCCCTC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	48	59	-	12.6818	2.38e-05	0.109	CAGCGTCCCCTC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	62	73	+	12.6818	2.38e-05	0.109	CAGCGTCCCCTC
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	62	73	+	12.6818	2.38e-05	0.109	CAGCGTCCCCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	26	+	12.4828	2.38e-05	0.00746	ACTCCGCCCCCAGGG
SP2	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	18	32	+	12.4828	2.38e-05	0.00746	CTCCCTCCCACACCC
SP2	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	86	100	+	12.4828	2.38e-05	0.00746	CTCCCTCCCACACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	8	22	-	12.4828	2.38e-05	0.00746	GCTCCACCTCCTAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	8	22	-	12.4828	2.38e-05	0.00746	GCTCCACCTCCTAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	8	22	-	12.4828	2.38e-05	0.00746	GCTCCACCTCCTAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	8	22	-	12.4828	2.38e-05	0.00746	GCTCCACCTCCTAGC
SP2	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	15	29	-	12.4828	2.38e-05	0.00746	CTCCCTCCCACACCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	53	67	-	12.4828	2.38e-05	0.00746	CCCCCGCCTCGGAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	53	67	-	12.4828	2.38e-05	0.00746	CCCCCGCCTCGGAGC
SP2	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	83	97	-	12.4828	2.38e-05	0.00746	CTCCCTCCCACACCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	19	32	-	12.3462	2.38e-05	0.0134	AGCCCGCCCTCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	19	32	-	12.3462	2.38e-05	0.0134	AGCCCGCCCTCGCC
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	81	92	-	12.7377	2.38e-05	0.41	CTAGGCGCCAAC
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	81	92	-	12.7377	2.38e-05	0.41	CTAGGCGCCAAC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	10.6923	2.38e-05	0.0721	GGCACGTGGC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	10.6923	2.38e-05	0.0721	GGCACGTGGC
ATF7	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	31	44	+	10.2714	2.38e-05	0.123	GGATGATGTCATGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	76	90	-	11.6714	2.38e-05	0.097	GGAGTGGAGAGGGCG
GSX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.0189	2.38e-05	1	CCTAATTAGA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	98	112	-	12.3654	2.38e-05	0.793	CCCCCATCCCTCGAA
HNF4G	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	42	-	12.5385	2.38e-05	0.335	CAGGGTCAGAGGCCG
HNF4G	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	73	87	+	12.5385	2.38e-05	0.335	CAGGGTCAGAGGCCG
KLF14	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	16	29	-	11.3793	2.39e-05	0.0236	GCCTCCGCCCCCTT
KLF14	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	16	29	-	11.3793	2.39e-05	0.0236	GCCTCCGCCCCCTT
KLF14	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	16	29	-	11.3793	2.39e-05	0.0236	GCCTCCGCCCCCTT
KLF14	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	44	57	+	11.3793	2.39e-05	0.0236	GGCCCCGCCCCATG
KLF14	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	58	71	-	11.3793	2.39e-05	0.0236	GGCCCCGCCCCATG
KLF14	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	87	100	+	11.3793	2.39e-05	0.0236	GCCTCCGCCCCCTT
ELF3	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	48	60	+	11.0345	2.39e-05	0.125	ATACCGGAAGTGT
GLIS1	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	75	90	+	-4.11538	2.39e-05	0.317	CTGCCCTCCGCGACGA
GLIS1	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	25	40	-	-4.11538	2.39e-05	0.317	CTGCCCTCCGCGACGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	76	89	-	8.69388	2.39e-05	0.0605	GGGGCCGACTGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	76	89	-	8.69388	2.39e-05	0.0605	GGGGCCGACTGAGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	90	103	-	8.69388	2.39e-05	0.0605	GGGGCGCTTGGGTG
ELK4	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	18	28	-	13.0545	2.39e-05	0.0433	TCACTTCCGCG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	33	-	13.0545	2.39e-05	0.0433	GCCCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	33	-	13.0545	2.39e-05	0.0433	GCCCTTCCGGT
ELK4	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	53	63	+	13.0545	2.39e-05	0.0433	TCACTTCCGCG
ELK4	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	52	62	-	13.0545	2.39e-05	0.0433	TCACTTCCGCG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	83	93	+	13.0545	2.39e-05	0.0433	CCATTTCCGGA
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	87	97	+	13.0545	2.39e-05	0.0433	TCACTTCCGCG
MAFK	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	52	66	-	12.9556	2.39e-05	0.778	ATGACTCAGCAGTAG
MAFK	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	100	114	-	12.9556	2.39e-05	0.778	TCTGGTCAGCATTAT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	52	-	11.5738	2.39e-05	0.0788	GGCCCGGAAGTC
REST	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	28	48	-	7.89796	2.39e-05	0.208	GGCAGCACCCTGACCGGAACC
FIGLA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	12.6379	2.39e-05	0.859	AACACCTGCT
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	18	37	-	7.02752	2.39e-05	0.0468	CCACCCCCCCCGCCCCCCCG
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	78	97	+	7.02752	2.39e-05	0.0468	CCACCCCCCCCGCCCCCCCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	20	30	-	12.9455	2.39e-05	0.047	CGCCCCAGGGA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	95	+	12.9455	2.39e-05	0.047	CGCCCCAGGGA
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	79	89	-	12.5862	2.39e-05	0.215	GCTTGTGGTTG
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	72	-	12.6224	2.39e-05	0.285	AGTCACGTGGT
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	16	27	+	10.1633	2.39e-05	0.099	CATGACATCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	88	99	-	10.1633	2.39e-05	0.099	CATGACATCAGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	88	99	-	10.1633	2.39e-05	0.099	CATGACATCAGC
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	33	+	11.9394	2.39e-05	0.241	CCACGTGACTCGGCG
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	65	+	11.9394	2.39e-05	0.241	CCACGTGACTCGGCG
TFAP4	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	-	13.1273	2.39e-05	0.655	AACAGCTGCT
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	+	13.1273	2.39e-05	0.655	AACAGCTGCT
TFAP4	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	-	13.1273	2.39e-05	0.655	AACAGCTGCT
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	13	24	+	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	13	24	+	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	17	28	-	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	17	28	-	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	17	28	-	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	17	28	-	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	69	80	+	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	69	80	+	12.5204	2.39e-05	0.146	GGGTTGGGGGCG
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	12.7241	2.39e-05	1	GACATATGCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	16	36	-	11.6122	2.39e-05	0.0107	GGAGGGGGGCAGGAGGAGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	21	41	-	11.6122	2.39e-05	0.0107	GGAAAAGGGCGGTAAGAGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	65	85	+	11.6122	2.39e-05	0.0107	GGAAGAGGAAGGGGAGATGTT
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	28	42	-	12.3485	2.39e-05	0.0762	ACCTCGCGACACTCG
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	6	15	-	13.4286	2.39e-05	0.422	AGCACCTGGG
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	6	15	-	13.4286	2.39e-05	0.422	AGCACCTGGG
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	45	54	-	13.4286	2.39e-05	0.422	AGCACCTGGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	+	12.5082	2.39e-05	0.0554	AGCCCTCCAGGCT
MSC	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	+	12.5488	2.39e-05	0.569	GACAGCTGTG
MSC	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	+	12.5488	2.39e-05	0.569	GACAGCTGTG
MSC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	-	12.5488	2.39e-05	0.569	GACAGCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	-	12.5488	2.39e-05	0.569	GACAGCTGTG
EGR3	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	36	50	+	9.53448	2.39e-05	0.0302	GCCCGCCCACGTCCG
EGR3	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	41	55	-	9.53448	2.39e-05	0.0302	GCCCGCCCACGTCCG
EGR3	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	60	74	+	9.53448	2.39e-05	0.0302	GCCCGCCCACGTCCG
EGR3	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	65	79	-	9.53448	2.39e-05	0.0302	GCCCGCCCACGTCCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	15	25	-	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	15	25	-	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	15	25	-	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	29	39	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	34	44	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	34	44	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	28	38	-	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	28	38	-	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	77	87	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	88	98	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	88	98	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	88	98	+	11.7069	2.39e-05	0.0649	CCGCCCACTCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	74	85	-	7.05172	2.4e-05	0.189	AGACACGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	74	85	-	7.05172	2.4e-05	0.189	AGACACGCGCCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	74	85	-	7.05172	2.4e-05	0.189	AGACACGCGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	74	85	-	7.05172	2.4e-05	0.189	AGACACGCGCCG
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	42	56	-	12.25	2.4e-05	0.397	TTATATAAGCCGGCG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	42	56	-	12.25	2.4e-05	0.397	TTATATAAGCCGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	+	12.7636	2.4e-05	0.0548	AGCCCTGAGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	12	-	12.7636	2.4e-05	0.0548	CCCCCTGAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	57	68	-	12.7636	2.4e-05	0.0548	CGCCCTCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	57	68	-	12.7636	2.4e-05	0.0548	CGCCCTCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	57	68	-	12.7636	2.4e-05	0.0548	CGCCCTCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	57	68	-	12.7636	2.4e-05	0.0548	CGCCCTCAGCCG
Bcl6	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	34	47	+	12.5161	2.4e-05	0.335	GTTCCTGAACAGGA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	36	46	+	12.4715	2.4e-05	0.0141	GCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	36	46	+	12.4715	2.4e-05	0.0141	GCCACTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	36	46	+	12.4715	2.4e-05	0.0141	GCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	36	46	+	12.4715	2.4e-05	0.0141	GCCACTCCTCC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	25	37	+	11.1818	2.4e-05	0.225	CGGGGACTTCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	45	57	+	11.1818	2.4e-05	0.225	CGGGGACTTCCCC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	58	70	-	11.1818	2.4e-05	0.225	CGGGGACTTCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	78	90	-	11.1818	2.4e-05	0.225	CGGGGACTTCCCC
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	82	97	+	-4.13462	2.4e-05	0.317	CGCCCCCCCGCGACTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	12	26	+	10.9672	2.4e-05	0.0406	GGCGACGCCCCGCGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	60	74	+	10.9672	2.4e-05	0.0406	GGCGACGCCCCGCGT
Klf12	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	89	103	-	10.9672	2.4e-05	0.0406	GGCGACGCCCCGCGT
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	97	111	+	10.2368	2.4e-05	0.175	ACTGTGTCTCAGCAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	97	111	+	10.2368	2.4e-05	0.175	ACTGTGTCTCAGCAT
NFYB	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	7	21	+	12.8077	2.4e-05	0.0988	GGCGCAGCCAATGGG
NFYB	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	17	31	+	12.8077	2.4e-05	0.0988	CTTCCAGCCAATGGG
NFYB	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	17	31	-	12.8077	2.4e-05	0.0988	GGCGCAGCCAATGGG
NFYB	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	84	98	+	12.8077	2.4e-05	0.0988	GGCGCAGCCAATGGG
NFYB	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	94	108	-	12.8077	2.4e-05	0.0988	GGCGCAGCCAATGGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	66	80	+	11.6571	2.4e-05	0.0971	GCAGGGGAAGGGGCG
ZBTB18	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	72	84	-	12.2	2.4e-05	0.729	TATGCAGCTGTGC
ZBTB18	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	72	84	-	12.2	2.4e-05	0.729	TATGCAGCTGTGC
ZBTB18	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	72	84	-	12.2	2.4e-05	0.729	TATGCAGCTGTGC
NR2F1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	41	53	-	13.0612	2.4e-05	0.367	GGGGGGTCAAGGG
NR2F1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	62	74	+	13.0612	2.4e-05	0.367	GGGGGGTCAAGGG
TFEB	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	12.7115	2.4e-05	0.123	GTCACGTGCT
TFEB	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	12.7115	2.4e-05	0.123	GTCACGTGCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	27	38	-	12.4868	2.4e-05	0.0208	AACCCCCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	27	38	-	12.4868	2.4e-05	0.0208	AACCCCCCCACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	28	39	-	12.4868	2.4e-05	0.0208	ACTCCGCCCCCT
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	-	12.4483	2.4e-05	0.0554	CGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	-	12.4483	2.4e-05	0.0554	TCCCCCGGCGGCT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	-	12.4483	2.4e-05	0.0554	CGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	-	12.4483	2.4e-05	0.0554	CGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	+	12.4483	2.4e-05	0.0554	TCCCCCGGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	+	12.4483	2.4e-05	0.0554	TCCCCCGGCGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	+	12.4483	2.4e-05	0.0554	TCCCCCGGCGGCT
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	+	12.4483	2.4e-05	0.0554	CGCCGTGGGGGCG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	28	37	+	12.5408	2.4e-05	0.0138	TGGGCGTGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	22	31	-	12.5408	2.4e-05	0.0138	TGGGCGTGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	22	31	-	12.5408	2.4e-05	0.0138	TGGGCGTGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	22	31	-	12.5408	2.4e-05	0.0138	TGGGCGTGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	22	31	-	12.5408	2.4e-05	0.0138	TGGGCGTGGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	+	12.6327	2.4e-05	0.0857	AGCCCTGGGCCA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	70	89	+	7.00917	2.4e-05	0.0468	CCCGCCCCCCCCCGCCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	71	+	12.4655	2.4e-05	0.00751	CCCCCGCCCTCGGAA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	71	+	12.4655	2.4e-05	0.00751	CCCCCGCCCTCGGAA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	69	83	+	12.4655	2.4e-05	0.00751	CCCCCTCCTCCCCAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	69	83	+	12.4655	2.4e-05	0.00751	CCCCCTCCTCCCCAA
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	32	46	-	12.4655	2.4e-05	0.00751	CCCCCTCCTCCCCAA
SP2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	44	58	-	12.4655	2.4e-05	0.00751	CCCCCGCCCTCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	47	57	+	13.1633	2.4e-05	0.238	GCTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	47	57	+	13.1633	2.4e-05	0.238	GCTTCTCAGAA
Stat5a::Stat5b	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	76	86	-	13.1633	2.4e-05	0.238	GCTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	87	97	-	13.1633	2.4e-05	0.238	GCTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	87	97	-	13.1633	2.4e-05	0.238	GCTTCTCAGAA
KLF14	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	51	64	+	11.3621	2.4e-05	0.0236	GACTCCGCCCATCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	51	64	-	11.3621	2.4e-05	0.0236	GACTCCGCCCATCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	51	64	-	11.3621	2.4e-05	0.0236	GACTCCGCCCATCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	51	64	-	11.3621	2.4e-05	0.0236	GACTCCGCCCATCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	51	64	-	11.3621	2.4e-05	0.0236	GACTCCGCCCATCC
KLF16	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	5	15	+	12.5172	2.4e-05	0.0129	GCCACGCCTCT
KLF16	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	100	110	-	12.5172	2.4e-05	0.0129	GCCACGCCTCT
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	-	10.0612	2.4e-05	0.194	TGTGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	-	10.0612	2.4e-05	0.194	TGTGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	-	10.0612	2.4e-05	0.194	TGTGAGTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	-	10.0612	2.4e-05	0.194	TGTGAGTCATC
MLX	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	12.5143	2.4e-05	0.205	GGCACGTGGT
ETS1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.931	2.4e-05	0.076	GCCGGATGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.931	2.4e-05	0.076	GCCGGATGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.931	2.4e-05	0.076	GCCGGATGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.931	2.4e-05	0.076	GCCGGATGTG
KLF5	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	14	23	-	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	33	42	-	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	33	42	-	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	51	+	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	51	+	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	90	99	+	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	90	99	+	13.2041	2.4e-05	0.012	GTCCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	92	101	+	13.2041	2.4e-05	0.012	GTCCCGCCCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	1	14	-	12.3269	2.41e-05	0.0134	CTCCCGCCCTCACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	1	14	-	12.3269	2.41e-05	0.0134	CTCCCGCCCTCACG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	1	14	-	12.3269	2.41e-05	0.0134	CTCCCGCCCTCACG
EGR1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	24	37	-	12.3269	2.41e-05	0.0134	CTCCAGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	28	41	-	12.3269	2.41e-05	0.0134	TACCCGCCCACTTC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	73	+	12.3269	2.41e-05	0.0134	GCCCTGCCCCCAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	78	91	+	12.3269	2.41e-05	0.0134	CTCCAGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	98	111	+	12.3269	2.41e-05	0.0134	GCCTCACCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	98	111	+	12.3269	2.41e-05	0.0134	GCCTCACCCCCTCT
Mafb	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	48	59	-	12.6854	2.41e-05	0.664	AAAGTGCTGATT
Mafb	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	32	43	+	12.6854	2.41e-05	0.664	AAAGTGCTGATT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	10	22	-	13.4286	2.41e-05	0.12	CCCACCTGTTTCT
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	37	54	+	8.05172	2.41e-05	0.175	GCGTCACGCCCCTGGGTC
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	50	67	-	8.05172	2.41e-05	0.175	GCGTCACGCCCCTGGGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	47	58	+	11.7636	2.41e-05	0.0885	GGCCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	47	58	+	11.7636	2.41e-05	0.0885	GGCCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	47	58	+	11.7636	2.41e-05	0.0885	GGCCCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	47	58	+	11.7636	2.41e-05	0.0885	GGCCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	60	71	+	11.7636	2.41e-05	0.0885	GGCCCGGAAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	40	50	+	13.2241	2.41e-05	0.0448	CCGCGGGAGGT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	40	50	+	13.2241	2.41e-05	0.0448	CCGCGGGAGGT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	55	65	-	13.2241	2.41e-05	0.0448	ACGCGGGAGAG
MEF2D	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	47	58	+	9.83636	2.41e-05	0.557	GTTATAAATAGT
Foxo1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	51	61	-	13.0345	2.41e-05	0.76	GCCTGTTTTCC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	12	26	-	10.7	2.41e-05	0.1	TGCCTCCCACGGAGA
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	37	51	+	10.7	2.41e-05	0.1	CACCCCCCACCGTAC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	37	51	+	10.7	2.41e-05	0.1	CACCCCCCACCGTAC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	89	103	+	10.7	2.41e-05	0.1	TGCCTCCCACGGAGA
HEY1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	12.9818	2.41e-05	0.0969	GTCACGTGCC
HEY1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	12.9818	2.41e-05	0.0969	GTCACGTGCC
CREB3	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	12	25	+	11.9571	2.41e-05	0.207	AGGCCACGTGACAG
HEY2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	12.4655	2.41e-05	0.16	CGCACGTGCC
HEY2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	12.4655	2.41e-05	0.16	CGCACGTGCC
HEY2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	12.4655	2.41e-05	0.16	CGCACGTGCC
HEY2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	12.4655	2.41e-05	0.16	CGCACGTGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	7	21	+	9.51724	2.41e-05	0.0302	CGCCGCCTCCGCGGG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	7	21	+	9.51724	2.41e-05	0.0302	CGCCGCCTCCGCGGG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	46	60	+	9.51724	2.41e-05	0.0302	TCCCGCCCCCACTTG
GATA2	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	4	17	-	13.1636	2.41e-05	0.951	CCTATCTTATCTCT
GATA2	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	38	51	-	13.1636	2.41e-05	0.951	CCTATCTTATCTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	53	67	+	11.8636	2.41e-05	0.252	TTAGTTTTTTTTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	35	49	-	11.8636	2.41e-05	0.252	TTAGTTTTTTTTTTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	35	49	-	11.8636	2.41e-05	0.252	TTAGTTTTTTTTTTT
Hoxa9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	45	55	-	12.7368	2.41e-05	1	ATAATAAATCA
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	-	12.4918	2.41e-05	0.0554	TCCCCGCCGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	+	12.4918	2.41e-05	0.0554	TCCCCGCCGGGGT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	+	12.4918	2.41e-05	0.0554	TCCCCGCCGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	+	12.4918	2.41e-05	0.0554	TCCCCGCCGGGGT
Mlxip	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	20	27	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	21	28	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	23	30	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	30	37	+	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	30	37	+	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	42	49	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	66	73	+	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	80	87	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	80	87	-	13.4262	2.41e-05	0.275	CCACGTGT
Mlxip	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	100	107	+	13.4262	2.41e-05	0.275	CCACGTGT
Pax2	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	3	10	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	4	11	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	8	15	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	4	11	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	7	14	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	30	37	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	34	41	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	34	41	-	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	34	41	-	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	43	50	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	40	47	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	40	47	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	50	57	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	58	65	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	71	78	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	71	78	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.1.0	71	78	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.0.0	71	78	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	65	72	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	80	87	+	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	99	106	-	10.4222	2.41e-05	0.645	AGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	107	114	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	100	107	-	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	107	114	+	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	105	112	-	10.4222	2.41e-05	0.645	AGTCACGG
Pax2	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	106	113	-	10.4222	2.41e-05	0.645	AGTCACGG
PROX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	35	46	+	11.2727	2.41e-05	1	TAAGCCGCCTTG
PROX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	35	46	+	11.2727	2.41e-05	1	TAAGCCGCCTTG
Myog	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	35	+	13.5306	2.41e-05	0.116	CGCAGCTGCGC
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	90	+	13.5306	2.41e-05	0.116	CGCAGCTGCGC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	83	+	7.01724	2.41e-05	0.189	AGTCACGTGCCT
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	83	+	7.01724	2.41e-05	0.189	AGTCACGTGCCT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	17	27	+	12.7541	2.41e-05	0.131	GACAGGAAATG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	76	-	12.7541	2.41e-05	0.131	GACAGGAAATG
BATF3	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	70	83	+	4.89394	2.41e-05	0.126	CCCTGACGTCAGCC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	31	45	+	12.3333	2.41e-05	0.0764	CTCTCATGAGATCTG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	24	41	+	12.7818	2.41e-05	0.915	CCTATCAGCCTCCAGCAT
GATA1::TAL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	24	41	+	12.7818	2.41e-05	0.915	CCTATCAGCCTCCAGCAT
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	-	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	-	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	+	12.8077	2.41e-05	0.0703	GGCCCGAGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	+	12.8077	2.41e-05	0.0703	CGCCCCGGGCT
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	17	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	17	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	17	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	17	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	17	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	24	35	-	12.3279	2.41e-05	0.107	CGCGCGGAAGTA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	37	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	37	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	37	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	37	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	37	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	65	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	65	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	65	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	65	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	65	-	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
EHF	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	78	89	+	12.3279	2.41e-05	0.107	ACGCCGGAAGTG
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	+	13.2295	2.41e-05	0.333	TCCACGTGTT
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	+	13.2295	2.41e-05	0.333	TCCACGTGTT
Npas2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	-	13.2295	2.41e-05	0.333	TCCACGTGTT
DBP	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	-	13.2264	2.41e-05	1	GCTTATGTAACA
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	18	28	-	12.898	2.41e-05	0.115	ATCACATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	18	28	-	12.898	2.41e-05	0.115	ATCACATGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	54	+	12.898	2.41e-05	0.115	ATCACATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	54	+	12.898	2.41e-05	0.115	ATCACATGACC
GLIS3	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	60	73	+	7.24242	2.41e-05	0.379	GAGCCTCCACGATG
GLIS3	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	42	55	-	7.24242	2.41e-05	0.379	GAGCCTCCACGATG
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	27	42	+	12.1091	2.41e-05	0.0374	ACCCACCCACCCGATC
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	29	37	+	12.3186	2.41e-05	1	CATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	35	43	-	12.3186	2.41e-05	1	CATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	50	58	+	12.3186	2.41e-05	1	CATGCAAAT
CDX1	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	2	10	+	12.1132	2.41e-05	1	GTCATAAAA
CDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	77	85	+	12.1132	2.41e-05	1	GTCATAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	77	85	+	12.1132	2.41e-05	1	GTCATAAAA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	29	39	+	13.5102	2.41e-05	0.145	GTATGAGTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	99	109	+	13.5102	2.41e-05	0.145	GCGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	31	41	-	13.5102	2.41e-05	0.145	GTATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	31	41	-	13.5102	2.41e-05	0.145	GTATGAGTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	31	41	-	13.5102	2.41e-05	0.145	GCGTGACTCAG
ELF4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	84	95	+	11.541	2.41e-05	0.0793	TATCCGGAAGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	+	12.9818	2.41e-05	0.063	GGCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	-	12.9818	2.41e-05	0.063	CGCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	-	12.9818	2.41e-05	0.063	CGCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	-	12.9818	2.41e-05	0.063	CGCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	-	12.9818	2.41e-05	0.063	CGCCGCCGGCA
ZNF143	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	53	68	+	5.55172	2.41e-05	0.294	GGACCACAATGCTCCG
HOXC12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	25	35	+	12.6727	2.41e-05	1	GGTTGTAAAAA
HOXC12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	25	35	+	12.6727	2.41e-05	1	GGTTGTAAAAA
HOXC12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	25	35	+	12.6727	2.41e-05	1	GGTTGTAAAAA
HOXC12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	25	35	+	12.6727	2.41e-05	1	GGTTGTAAAAA
HOXC12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	25	35	+	12.6727	2.41e-05	1	GGTTGTAAAAA
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	91	105	+	12.8936	2.42e-05	0.311	CTGGATGATGCAATC
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	19	31	-	12.0152	2.42e-05	0.592	GTTAAACATTAAG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	3	13	+	12.6	2.42e-05	0.21	ACCAGGATGTT
TEAD4	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	11	20	+	12.0645	2.42e-05	0.719	GGCATTCCAC
TEAD4	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	39	48	-	12.0645	2.42e-05	0.719	GACATTCCAG
TEAD4	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	51	60	+	12.0645	2.42e-05	0.719	GGCATTCCAC
TEAD4	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	55	64	-	12.0645	2.42e-05	0.719	GGCATTCCAC
TEAD4	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	67	76	+	12.0645	2.42e-05	0.719	GACATTCCAG
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	92	101	+	12.0645	2.42e-05	0.719	GACATTCCAG
TEAD4	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	95	104	-	12.0645	2.42e-05	0.719	GGCATTCCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	29	42	+	13.1538	2.42e-05	0.178	AAAGCATGAGTCAC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	13	32	-	6.99083	2.42e-05	0.0468	CCCCCACGCCACAGCCCCCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	45	+	6.99083	2.42e-05	0.0468	CCCCCACCCCGCAGCCCACC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	31	50	+	6.99083	2.42e-05	0.0468	CCCCCCCCCCCCCGCACGCA
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	29	39	-	13.2041	2.42e-05	0.087	GTCACGTGGCA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	29	39	-	13.2041	2.42e-05	0.087	GTCACGTGGCA
Hoxa11	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	1	12	+	12.7097	2.42e-05	1	TGTCATAAAAAT
HSF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	39	51	+	10.2623	2.42e-05	1	TTCCAGGATGTTC
HSF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	39	51	+	10.2623	2.42e-05	1	TTCCAGGATGTTC
XBP1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	23	36	-	12	2.42e-05	0.446	GCGGAGACGTCATC
XBP1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	79	92	+	12	2.42e-05	0.446	GCGGAGACGTCATC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	12.7439	2.42e-05	0.129	ATCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	12.7439	2.42e-05	0.129	ATCACGTGGC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	12.7439	2.42e-05	0.129	GCCACGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	12.7439	2.42e-05	0.129	GCCACGTGAT
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	12.7439	2.42e-05	0.129	GCCACGTGAT
TFEC	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	12.7439	2.42e-05	0.129	ATCACGTGGC
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	21	34	-	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	21	34	-	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	44	57	+	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	44	57	+	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	45	58	+	8.66327	2.42e-05	0.0605	GGGGCCCACACGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	45	58	+	8.66327	2.42e-05	0.0605	GGGGCCCACACGTG
PLAG1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	58	71	-	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
PLAG1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	81	94	+	8.66327	2.42e-05	0.0605	GGGGCCTAGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	4	24	-	11.5918	2.42e-05	0.0108	GGATGCGAGGGGGTGGGGAGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	6	26	-	11.5918	2.42e-05	0.0108	CGGGGCGGGGGCGAGGGGAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	33	53	-	11.5918	2.42e-05	0.0108	TGGGCACGGCGAGGAGGAGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	77	97	-	11.5918	2.42e-05	0.0108	CGGGGCGGGGGCGAGGGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	18	38	+	11.5918	2.42e-05	0.0108	CGGGGCGGGGGCGAGGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	75	95	+	11.5918	2.42e-05	0.0108	GGAGCAGAGAGACAAGGAAAT
ZNF263	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	89	109	+	11.5918	2.42e-05	0.0108	CGGGGCGGGGGCGAGGGGAGG
SCRT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	12	24	+	9.98361	2.42e-05	0.673	CTGCAAAAGGTTG
SCRT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	12	24	+	9.98361	2.42e-05	0.673	CTGCAAAAGGTTG
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	94	103	+	12.9423	2.42e-05	0.439	AGACCGCAAC
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	94	103	+	12.9423	2.42e-05	0.439	AGACCGCAAC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	43	56	-	11.3448	2.42e-05	0.0236	CGCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	43	56	-	11.3448	2.42e-05	0.0236	CGCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	43	56	-	11.3448	2.42e-05	0.0236	CGCCCCGCCTCCTC
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	10	19	+	12.5484	2.42e-05	1	CTTTTCCACT
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	89	98	+	12.5484	2.42e-05	1	CTTTTCCACT
ERG	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	49	58	+	12.9091	2.42e-05	0.102	GCCGGAAGTA
ERG	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	66	-	12.9091	2.42e-05	0.102	GCCGGAAGTA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	67	76	+	12.9091	2.42e-05	0.102	GCCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	67	76	+	12.9091	2.42e-05	0.102	GCCGGAAGTA
ERG	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	71	80	+	12.9091	2.42e-05	0.102	GCCGGAAGTA
SPI1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	24	37	+	6.63636	2.42e-05	0.139	TGATACCGGAAGTG
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	88	102	+	1.8	2.42e-05	0.506	AGCGAAACCTCAACT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	45	64	+	6.98165	2.42e-05	0.0468	CCCACCCCCACCCCTCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	45	64	+	6.98165	2.42e-05	0.0468	CCCACCCCCACCCCTCTCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	16	30	-	9.5	2.42e-05	0.0302	CGCCGCCGCCGCAGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	63	77	+	9.5	2.42e-05	0.0302	CCACGCCCCTGCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	63	77	+	9.5	2.42e-05	0.0302	CCACGCCCCTGCGCT
EGR3	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	85	99	+	9.5	2.42e-05	0.0302	CGCCGCCGCCGCAGC
SP3	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	73	+	12.4553	2.42e-05	0.0143	ACCCCTCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	27	37	-	12.4553	2.42e-05	0.0143	TCCACGCCCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	76	90	-	12.4483	2.42e-05	0.00758	CCTCCACCCCCGCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	34	44	-	12.9038	2.43e-05	0.00872	GCCCCTCCTCA
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	4	18	-	12.7885	2.43e-05	0.099	GACGCCACCAATGGG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	4	18	-	12.7885	2.43e-05	0.099	GACGCCACCAATGGG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.6727	2.43e-05	0.0875	ACCGGAAGGA
ELK3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.9138	2.43e-05	0.0764	AGCGGAAGTA
NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	45	55	-	10.0408	2.43e-05	0.194	CATGAGTCACA
NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	45	55	-	10.0408	2.43e-05	0.194	CATGAGTCACA
ATF4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	41	53	-	12.0984	2.43e-05	0.506	AAGTGACGCAACG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	19	32	+	12.3077	2.43e-05	0.0135	GCGCCTCCCACTTC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	19	32	+	12.3077	2.43e-05	0.0135	GCGCCTCCCACTTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	22	35	-	12.3077	2.43e-05	0.0135	GCACCGCCGCCGGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	33	46	-	12.3077	2.43e-05	0.0135	GCCTCGCCTCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	93	106	-	12.3077	2.43e-05	0.0135	GCGCCTCCCACTTC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	93	106	-	12.3077	2.43e-05	0.0135	GCGCCTCCCACTTC
YY1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	74	85	-	12.6923	2.43e-05	0.145	AAATATGGCTGC
YY1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	30	41	+	12.6923	2.43e-05	0.145	AAATATGGCTGC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	34	43	-	12.8103	2.43e-05	0.103	CCCAGCTGCC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	49	58	-	12.8103	2.43e-05	0.103	CCCAGCTGCC
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	20	30	+	12.6364	2.43e-05	0.244	TTGCCAGGAAA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	20	30	+	12.6364	2.43e-05	0.244	TTGCCAGGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	20	30	+	12.6364	2.43e-05	0.244	TTGCCAGGAAA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	20	30	+	12.6364	2.43e-05	0.244	TTGCCAGGAAA
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	+	9.74545	2.43e-05	0.557	ACTAATATTAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	+	9.74545	2.43e-05	0.557	ACTAATATTAGC
JUND	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	-	13.0851	2.43e-05	0.169	ACTGACTCATT
JUND	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	+	13.0851	2.43e-05	0.169	ACTGACTCATT
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	34	45	-	12.5645	2.43e-05	1	AAATGCAAATTC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	19	38	+	6.97248	2.43e-05	0.0468	GACCACCCCCCCCCCCCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	48	67	+	6.97248	2.43e-05	0.0468	CCCCCCCGCCCCCCCCCCGT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	56	69	+	9.31915	2.43e-05	0.0959	GCCTCCCTGTGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	56	69	+	9.31915	2.43e-05	0.0959	GCCTCCCTGTGGCG
TGIF1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	-	4	2.43e-05	0.764	TGACAGGTGCCC
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	+	4	2.43e-05	0.764	TAACAGCTGTCC
TGIF1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	+	4	2.43e-05	0.764	TGACAGGTGCCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	77	94	+	-9.75	2.43e-05	0.0324	GGCAGAGAGAGAGGCAGG
MTF1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	77	90	+	9.10976	2.43e-05	0.5	GTTGCAGACAGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	70	86	-	7.4	2.43e-05	0.0181	GACGCCCCTCCCCTGTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	70	86	-	7.4	2.43e-05	0.0181	GACGCCCCTCCCCTGTC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	70	86	-	7.4	2.43e-05	0.0181	GACGCCCCTCCCCTGTC
Sox17	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	33	41	+	12.1798	2.43e-05	1	GTCATTGTC
Sox17	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	30	38	-	12.1798	2.43e-05	1	GTCATTGTC
Sox17	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	77	85	+	12.1798	2.43e-05	1	GTCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	77	85	+	12.1798	2.43e-05	1	GTCATTGTC
Sox17	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	74	82	-	12.1798	2.43e-05	1	GTCATTGTC
USF1	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	28	38	-	12.8776	2.43e-05	0.115	GTCATGTGACG
FOS	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	+	13.4255	2.43e-05	0.18	AGTGACTCACT
FOXP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	3	13	-	13.5152	2.43e-05	0.77	CAGTAAACAGC
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	3	13	-	13.5152	2.43e-05	0.77	CAGTAAACAGC
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	3	13	-	13.5152	2.43e-05	0.77	CAGTAAACAGC
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	3	13	-	13.5152	2.43e-05	0.77	CAGTAAACAGC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	48	62	+	10.1974	2.43e-05	0.175	AGGATGACGAAGCTC
Bach1::Mafk	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	53	67	-	10.1974	2.43e-05	0.175	AGGATGACGAAGCTC
Hes1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	12	21	-	10.6573	2.43e-05	0.0721	CACACGCGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	-	12.431	2.44e-05	0.0554	GGCCCACGGGGCT
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	+	12.431	2.44e-05	0.0554	GGCCCACGGGGCT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	45	58	-	12.8485	2.44e-05	0.0371	CGTCCCTCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	45	58	-	12.8485	2.44e-05	0.0371	CGTCCCTCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	45	58	-	12.8485	2.44e-05	0.0371	CGTCCCTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	45	58	-	12.8485	2.44e-05	0.0371	CGTCCCTCGGCCTC
Zfx	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	84	97	-	12.8485	2.44e-05	0.0371	TAGGGCTAGGCCTA
KLF16	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	77	87	+	12.4828	2.44e-05	0.0129	AACACGCCCAT
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	23	33	+	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	34	44	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	34	44	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	37	47	-	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	37	47	-	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	37	47	-	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	37	47	-	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	82	92	+	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	82	92	+	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	79	89	-	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	79	89	-	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	100	110	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	100	110	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	100	110	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	100	110	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	100	110	+	12.2727	2.44e-05	0.0118	CCGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	93	103	-	12.2727	2.44e-05	0.0118	ACGCGCGCGCG
ELF3	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	31	43	-	10.9828	2.44e-05	0.125	GCCCCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	78	90	-	10.9828	2.44e-05	0.125	GCCCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	78	90	-	10.9828	2.44e-05	0.125	GCCCCGGAAGTGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	78	90	-	10.9828	2.44e-05	0.125	GCCCCGGAAGTGC
ELF3	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	72	84	+	10.9828	2.44e-05	0.125	GCCCCGGAAGTGC
RORA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	103	112	-	13.3596	2.44e-05	0.864	ATGGAGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	103	112	-	13.3596	2.44e-05	0.864	ATGGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	103	112	-	13.3596	2.44e-05	0.864	ATGGAGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	103	112	-	13.3596	2.44e-05	0.864	ATGGAGGTCA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	81	92	+	12.7213	2.44e-05	0.41	GTTGGCGCCTAG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	81	92	+	12.7213	2.44e-05	0.41	GTTGGCGCCTAG
Nr2f6	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	56	-	10.8939	2.44e-05	0.252	GAGGGTAAAGGTCT
Nr2f6	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	59	72	+	10.8939	2.44e-05	0.252	GAGGGTAAAGGTCT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	+	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	+	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	-	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	-	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	-	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	-	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	+	12.602	2.44e-05	0.0857	CGGCCGGGGGCA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	7	16	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	7	16	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	7	16	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	7	16	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	7	16	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	1	10	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	1	10	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	16	25	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	7	16	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	7	16	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	13	22	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	15	24	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	15	24	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	30	39	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	31	40	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	31	40	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	31	40	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	31	40	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	33	42	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	24	33	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	24	33	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	33	42	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	28	37	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	37	46	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	28	37	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	32	41	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	39	48	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	43	52	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	55	64	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	51	60	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	56	65	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	66	75	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	67	76	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	67	76	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	67	76	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	67	76	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	74	83	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	75	84	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	82	91	+	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	75	84	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	88	97	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	88	97	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	90	99	-	12.5306	2.44e-05	0.0138	CGGGCGGGGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	+	12.4754	2.44e-05	0.0554	AGCCCTTGAGGCT
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	63	78	+	6.74545	2.44e-05	0.312	CGGGGCGGAGTCCGGA
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	63	78	+	6.74545	2.44e-05	0.312	CGGGGCGGAGTCCGGA
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	63	78	+	6.74545	2.44e-05	0.312	CGGGGCGGAGTCCGGA
TGIF1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	+	3.98077	2.44e-05	0.764	TGGCTGCTGTCA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	41	-	11.7455	2.44e-05	0.089	ATGCCGGAAATG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	41	-	11.7455	2.44e-05	0.089	ATGCCGGAAATG
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	5	19	+	12.3269	2.44e-05	0.793	CCCGCGTCCCGCGGA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	24	43	-	6.9633	2.44e-05	0.0468	CCCCCCCCCTCCCCTTCCGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	24	43	-	6.9633	2.44e-05	0.0468	CCCCCCCCCTCCCCTTCCGC
EGR4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	15	30	-	12.0909	2.44e-05	0.0374	CCACCCCCACCCCCAC
EGR4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	21	36	-	12.0909	2.44e-05	0.0374	CCACCCCCACCCCCAC
EGR4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	27	42	-	12.0909	2.44e-05	0.0374	CCACCCCCACCCCCAC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	28	43	-	12.0909	2.44e-05	0.0374	CCCCGCCCACCCTGCG
EGR4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	33	48	-	12.0909	2.44e-05	0.0374	CCACCCCCACCCCCAC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	62	77	+	12.0909	2.44e-05	0.0374	CCCCACCCACCCCCCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	62	77	+	12.0909	2.44e-05	0.0374	CCCCACCCACCCCCCT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	68	83	-	12.0909	2.44e-05	0.0374	CCCCACCCACCCCCCT
GLIS1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	13	28	-	-4.21154	2.44e-05	0.317	GCACCGCCCACGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	21	35	+	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	21	35	+	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	21	35	+	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	36	50	-	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	36	50	-	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	36	50	-	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
EGR3	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	80	94	-	9.48276	2.44e-05	0.0302	CCCCCCCCCCGCTGT
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	88	101	-	8.64286	2.44e-05	0.0605	GGAGGGAAAGGGGG
RXRG	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	41	-	5.53191	2.44e-05	0.467	GGGGTCAGAAGTCG
STAT3	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	3	13	+	12.9796	2.44e-05	0.196	GTTCCTGGAAT
STAT3	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	47	57	-	12.9796	2.44e-05	0.196	GTTCCTGGAAT
RFX5	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	32	47	+	9.34483	2.44e-05	0.159	TGGCGCCATGGCGACG
RFX5	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	68	83	-	9.34483	2.44e-05	0.159	TGGCGCCATGGCGACG
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	+	13.4	2.44e-05	0.149	GATGACTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	+	13.4	2.44e-05	0.149	GATGACTCACA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	+	13.4	2.44e-05	0.149	GATGACTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	+	13.4	2.44e-05	0.149	GATGACTCACA
NR2F1	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	44	56	-	13.0408	2.44e-05	0.367	TAGGGGTCATCCG
NR2F1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	59	71	+	13.0408	2.44e-05	0.367	TAGGGGTCATCCG
NR2F1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	59	71	+	13.0408	2.44e-05	0.367	TAGGGGTCATCCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	4	21	+	-9.76316	2.44e-05	0.0324	CGGAGAAAGGGAGCAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	4	21	+	-9.76316	2.44e-05	0.0324	CGGAGAAAGGGAGCAGAG
ETV2	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	19	29	+	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	22	32	+	12.7377	2.44e-05	0.131	AACCGGAAGGG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	22	32	+	12.7377	2.44e-05	0.131	AACCGGAAGGG
ETV2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	35	45	+	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	43	53	+	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	43	53	+	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	22	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	22	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	80	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	80	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	80	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	80	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
ETV2	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	86	96	-	12.7377	2.44e-05	0.131	GACCGGAAGCC
Nfe2l2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	41	55	-	11.8939	2.44e-05	0.241	CTGCCTGAGACAGCA
Nfe2l2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	60	74	+	11.8939	2.44e-05	0.241	CTGCCTGAGACAGCA
FEV	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.75	2.44e-05	0.0872	AGCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.75	2.44e-05	0.0872	AGCGGAAGTG
KLF14	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	3	16	+	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	32	45	+	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	32	45	+	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	32	45	+	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	40	53	+	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	32	45	-	11.3276	2.44e-05	0.0236	TGCCCCCCCCCCTC
KLF14	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	62	75	-	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	70	83	-	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	99	112	-	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	99	112	-	11.3276	2.44e-05	0.0236	CGCCCCGCCCCTGC
RELA	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	35	44	-	12.898	2.44e-05	0.189	GGGACATTCC
RELA	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	71	80	+	12.898	2.44e-05	0.189	GGGACATTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	79	88	+	12.898	2.44e-05	0.189	GGGACATTCC
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	71	85	+	12.8723	2.44e-05	0.311	TGTGATGACGCCACG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	71	85	+	12.8723	2.44e-05	0.311	TGTGATGACGCCACG
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	12.75	2.44e-05	1	GACATATGCT
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	29	43	-	12.2182	2.44e-05	0.0974	GCCAGCCCGCGGTGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	29	43	-	12.2182	2.44e-05	0.0974	GCCAGCCCGCGGTGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	78	92	+	12.2182	2.44e-05	0.0974	GCCAGCCCGCGGTGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	78	92	+	12.2182	2.44e-05	0.0974	GCCAGCCCGCGGTGA
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	-	12.9571	2.44e-05	0.173	AGCAGCTGTG
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	-	12.9571	2.44e-05	0.173	AGCAGCTGTG
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	+	12.9571	2.44e-05	0.173	AGCAGCTGTG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	-	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	-	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	+	12.9273	2.44e-05	0.047	AGCCCGCGGCG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	71	82	+	12.6429	2.44e-05	0.217	GGCACCCACCCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	88	100	+	13.4082	2.44e-05	0.12	GCCAGCTGCCTGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	88	100	+	13.4082	2.44e-05	0.12	GCCAGCTGCCTGC
IRF2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	23	40	-	8.53211	2.44e-05	0.541	TGAAAGCAAAAGTAAAGT
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	35	52	-	8.53211	2.44e-05	0.541	TGAAAGCAAAAGTAAAGT
IRF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	35	52	-	8.53211	2.44e-05	0.541	TGAAAGCAAAAGTAAAGT
Gabpa	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	20	30	-	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	32	42	+	12.918	2.44e-05	0.0429	CCGGAAGCCCT
Gabpa	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	57	67	+	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	48	58	-	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	48	58	-	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	48	58	-	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	48	58	-	12.918	2.44e-05	0.0429	CCGGAAGCAAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	63	73	+	12.918	2.44e-05	0.0429	CCGGAAGCCCT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	63	73	+	12.918	2.44e-05	0.0429	CCGGAAGCCCT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	27	37	+	12.9828	2.44e-05	0.446	CAATCAGTGCC
Gfi1b	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	27	37	+	12.9828	2.44e-05	0.446	CAATCAGTGCC
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	46	56	+	12.9828	2.44e-05	0.446	CAATCAGTGCC
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	26	36	-	12.9828	2.44e-05	0.446	CAATCAGTGCC
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	59	69	-	12.9828	2.44e-05	0.446	CAATCAGTGCC
Gfi1b	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	78	88	-	12.9828	2.44e-05	0.446	CAATCAGTGCC
ELF4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	47	58	+	11.5246	2.45e-05	0.0797	AGGCCGGAAGTA
ELF4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	68	-	11.5246	2.45e-05	0.0797	AGGCCGGAAGTA
DUXA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	22	34	+	12.8065	2.45e-05	1	TTGAGTTAATCAT
DUXA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	22	34	+	12.8065	2.45e-05	1	TTGAGTTAATCAT
Dmbx1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	29	45	-	12.9474	2.45e-05	1	CGGGAGGGATTAAGGTT
CTCF	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	27	45	-	10.9672	2.45e-05	0.0911	TCTCCTCCAGATGACGTCA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	1	20	-	6.95413	2.45e-05	0.0468	CCCCACCCATCCCACCCCCT
NFATC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	66	75	-	11.6869	2.45e-05	0.908	TTTTTCCGCT
NFATC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	66	75	-	11.6869	2.45e-05	0.908	TTTTTCCGCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	34	+	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	40	+	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	56	+	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	61	+	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	25	35	-	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	59	69	-	12.4655	2.45e-05	0.0129	GTCCCGCCCAC
REL	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	41	50	+	12.697	2.45e-05	0.242	GGGTCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	76	85	+	12.697	2.45e-05	0.242	GGGTCTTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	76	85	+	12.697	2.45e-05	0.242	GGGTCTTTCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	40	51	+	12.7273	2.45e-05	0.0548	TCCCCTCCGGCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	63	74	+	12.7273	2.45e-05	0.0548	TCCCCTCCGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	3	14	-	12.7273	2.45e-05	0.0548	CGCCCGCGGGGA
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	52	-	12.7273	2.45e-05	0.0548	TCCCCTCCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	63	-	12.7273	2.45e-05	0.0548	CGCCCGCGGGGA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	63	-	12.7273	2.45e-05	0.0548	CGCCCGCGGGGA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	75	-	12.7273	2.45e-05	0.0548	TCCCCTCCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	67	78	-	12.7273	2.45e-05	0.0548	CCCCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	67	78	-	12.7273	2.45e-05	0.0548	CCCCCCCGGCCG
SP4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	30	46	+	7.38182	2.45e-05	0.0182	GGGGCCACGCCCCGGCG
SP4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	69	85	-	7.38182	2.45e-05	0.0182	GGGGCCACGCCCCGGCG
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	45	59	-	12.4423	2.45e-05	0.426	GGGTCACGTGGCCTC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	45	59	-	12.4423	2.45e-05	0.426	GGGTCACGTGGCCTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	45	59	-	12.4423	2.45e-05	0.426	GGGTCACGTGGCCTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	45	59	-	12.4423	2.45e-05	0.426	GGGTCACGTGGCCTC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	45	59	-	12.4423	2.45e-05	0.426	GGGTCACGTGGCCTC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	44	-	11.6143	2.45e-05	0.0986	GAGGGTGGGAGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	29	-	11.5714	2.45e-05	0.0109	CGAGGTGGGGGGCGGGGGGCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	23	43	-	11.5714	2.45e-05	0.0109	CGGGGCGGAGGGCAGGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	44	64	-	11.5714	2.45e-05	0.0109	GGGGGGGGGCGGGGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	44	64	-	11.5714	2.45e-05	0.0109	GGGGGGGGGCGGGGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	44	64	-	11.5714	2.45e-05	0.0109	GGGGGGGGGCGGGGGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	44	64	-	11.5714	2.45e-05	0.0109	GGGGGGGGGCGGGGGGGGCGG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	56	76	-	11.5714	2.45e-05	0.0109	AAATGAGGATGGGGCAGGGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	35	55	+	11.5714	2.45e-05	0.0109	CGGGGCGGAGGGCAGGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	35	55	+	11.5714	2.45e-05	0.0109	CGGGGCGGAGGGCAGGGGAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	39	59	+	11.5714	2.45e-05	0.0109	AAATGAGGATGGGGCAGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	68	88	+	11.5714	2.45e-05	0.0109	AGAAGAGGTGGGAGGAAGAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	90	110	+	11.5714	2.45e-05	0.0109	GGAGCAGCACTAGAGGAAGGT
ZNF143	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	33	48	-	5.5	2.45e-05	0.294	TTCCCATGGTTCTTCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	43	57	+	12.431	2.45e-05	0.00764	CTCCCTCCTCCAGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	28	42	-	12.431	2.45e-05	0.00764	CTCCCTCCTCCAGCG
SP8	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	19	30	-	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	19	30	-	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	19	30	-	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	39	50	-	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
SP8	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	65	76	+	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	55	66	-	12.4605	2.45e-05	0.0208	GCCCCGGCCACT
SP8	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	85	96	+	12.4605	2.45e-05	0.0208	GCCCAGCCCCCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	34	44	+	13.2069	2.45e-05	0.0448	TGGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	34	44	+	13.2069	2.45e-05	0.0448	TGGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	89	99	+	13.2069	2.45e-05	0.0448	GGGCGCGAGGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	89	99	+	13.2069	2.45e-05	0.0448	GGGCGCGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	89	99	+	13.2069	2.45e-05	0.0448	GGGCGCGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	89	99	+	13.2069	2.45e-05	0.0448	GGGCGCGAGGA
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	53	63	+	12.8846	2.45e-05	0.00879	TTCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	63	73	+	12.8846	2.45e-05	0.00879	TCCCCGCCTCG
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	92	108	+	-10.9857	2.45e-05	0.94	TGCCTTCCACGGATCAC
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	24	32	+	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	29	37	+	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	44	52	+	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	72	80	-	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	78	86	-	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	78	86	-	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	78	86	-	12.8654	2.45e-05	0.442	TAACCACAA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	103	111	-	12.8654	2.45e-05	0.442	TAACCACAA
STAT1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	5	15	-	12.6	2.45e-05	0.244	GTTCCTGGAAG
STAT1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	30	40	-	12.6	2.45e-05	0.244	GTTCCTGGAAG
STAT1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	85	+	12.6	2.45e-05	0.244	GTTCCTGGAAG
STAT1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	110	+	12.6	2.45e-05	0.244	GTTCCTGGAAG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	25	38	-	9.29787	2.45e-05	0.0959	CCCCCCCCGCCGCC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	+	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	+	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	-	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	-	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	-	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	-	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
TFAP2B	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	-	12.6909	2.45e-05	0.0893	CGCCCCCAGGCC
RARA(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	28	44	-	6.4918	2.45e-05	0.563	GGGTCGAGGCGAGGCCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	28	44	-	6.4918	2.45e-05	0.563	GGGTCGAGGCGAGGCCA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	28	44	-	6.4918	2.45e-05	0.563	GGGTCGAGGCGAGGCCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	28	44	-	6.4918	2.45e-05	0.563	GGGTCGAGGCGAGGCCA
RARA(var.2)	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	71	87	+	6.4918	2.45e-05	0.563	GGGTCGAGGCGAGGCCA
ELF5	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	26	-	12.4909	2.45e-05	0.116	AACCGGAAGCT
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	44	54	+	12.4909	2.45e-05	0.116	GCCCGGAAGTT
ELF5	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	64	-	12.4909	2.45e-05	0.116	AACCGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	71	-	12.4909	2.45e-05	0.116	GCCCGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	71	-	12.4909	2.45e-05	0.116	GCCCGGAAGTT
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	-	11.5818	2.45e-05	0.132	CGTGACGTAACA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	9	19	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	9	19	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	9	19	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	10	20	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	24	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	34	44	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	34	44	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	95	105	+	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	10	20	-	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	10	20	-	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	95	105	-	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	104	114	-	12.4472	2.45e-05	0.0143	ACCCCGCCTCC
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	13.1613	2.45e-05	1	GACATATGCT
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	18	31	+	12.2885	2.45e-05	0.0135	CCGCTGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	30	43	+	12.2885	2.45e-05	0.0135	GCCCCGCCCCTGGA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	22	35	-	12.2885	2.45e-05	0.0135	CTGCCTCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	22	35	-	12.2885	2.45e-05	0.0135	CTGCCTCCCCTGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	26	39	-	12.2885	2.45e-05	0.0135	GCACCGCCCCCTTT
EGR1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	49	62	+	12.2885	2.45e-05	0.0135	CCAACTCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	60	73	+	12.2885	2.45e-05	0.0135	CCGCTGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	60	73	+	12.2885	2.45e-05	0.0135	CCGCTGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	47	60	-	12.2885	2.45e-05	0.0135	GCCCCGCCCCTGGA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	47	60	-	12.2885	2.45e-05	0.0135	GCCCCGCCCCTGGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	88	101	+	12.2885	2.45e-05	0.0135	CTGCCTCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	88	101	+	12.2885	2.45e-05	0.0135	CTGCCTCCCCTGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	90	103	+	12.2885	2.45e-05	0.0135	CCGCTGCCGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	84	97	-	12.2885	2.45e-05	0.0135	CCGCTGCCGCCGCC
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	8	22	-	9.46552	2.45e-05	0.0302	TCACGCCCCCCCCAC
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	93	107	+	9.46552	2.45e-05	0.0302	TCACGCCCCCCCCAC
Myc	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	41	50	+	13.5091	2.45e-05	0.311	ACACGTGCTT
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	41	50	+	13.5091	2.45e-05	0.311	ACACGTGCTT
Myc	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	49	58	+	13.5091	2.45e-05	0.311	ACATGTGGTT
Myc	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	89	98	-	13.5091	2.45e-05	0.311	ACATGTGGTT
ATF7	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	51	64	+	10.2	2.45e-05	0.125	TCCTGACGTCACGC
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	51	64	-	10.2	2.45e-05	0.125	TCCTGACGTCACGC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	51	64	-	10.2	2.45e-05	0.125	TCCTGACGTCACGC
Sox6	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	78	87	+	13.4857	2.45e-05	0.702	TCATTGTTCT
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	+	12.5246	2.45e-05	0.064	TGCCCTTCAGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	-	12.5246	2.45e-05	0.064	TGCCCTTCAGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	-	12.5246	2.45e-05	0.064	TGCCCTTCAGGGG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	+	12.5246	2.45e-05	0.064	TGCCCTTCAGGGG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	-	12.5246	2.45e-05	0.064	TGCCCTTCAGGGG
Tcf7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	21	32	+	11.5484	2.46e-05	1	GAAGATGAAAGA
Tcf7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.0.0	21	32	+	11.5484	2.46e-05	1	GAAGATGAAAGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	61	73	-	10.9655	2.46e-05	0.125	GTCCCGGAAGTCT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	61	73	-	10.9655	2.46e-05	0.125	GTCCCGGAAGTCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	+	12.459	2.46e-05	0.0554	GGCCGCGAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	+	12.459	2.46e-05	0.0554	GGCCGCGAGGGCG
CEBPE	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	+	12.3455	2.46e-05	0.702	ATTGTGCAAC
FOXC1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	18	28	+	12.68	2.46e-05	1	TGAGTAAACAA
FOXC1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	35	-	12.68	2.46e-05	1	TGAGTAAACAA
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	35	-	12.68	2.46e-05	1	TGAGTAAACAA
FOXC1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	80	90	+	12.68	2.46e-05	1	TGAGTAAACAA
FOXC1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	97	-	12.68	2.46e-05	1	TGAGTAAACAA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	31	44	+	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	31	44	+	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	19	32	-	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	40	53	-	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	40	53	-	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	62	75	+	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	71	84	-	8.62245	2.46e-05	0.0605	GAGGGGGAGGGGGA
Zfx	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	18	31	-	12.8333	2.46e-05	0.0372	CCGCCCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	84	97	+	12.8333	2.46e-05	0.0372	CCGCCCCTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	84	97	+	12.8333	2.46e-05	0.0372	CCGCCCCTGGCCTG
Neurog1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	48	57	+	11.033	2.46e-05	1	TCCATATGTG
Neurog1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	42	51	-	11.033	2.46e-05	1	TCCATATGTG
SMAD3	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	26	35	-	11.5636	2.46e-05	1	CGTCGAGACA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	17	-	12.5612	2.46e-05	0.285	GGCCACGTGCT
HEY2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	-	12.431	2.46e-05	0.16	GGCACGTGGG
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	+	12.431	2.46e-05	0.16	GGCACGTGGG
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	+	12.431	2.46e-05	0.16	GGCACGTGGG
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	-	12.431	2.46e-05	0.16	GGCACGTGGG
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	-	12.431	2.46e-05	0.16	GGCACGTGGG
FLI1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
FLI1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	12.7234	2.46e-05	0.0896	ACAGGAAGTG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	93	107	-	8.32584	2.46e-05	0.189	CCAACCCTGGGGAGC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	7	21	+	8.32584	2.46e-05	0.189	CCAACCCTGGGGAGC
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	8	17	-	12.101	2.46e-05	0.164	GGAGGGGTGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	20	29	+	12.101	2.46e-05	0.164	GGAGGGGTGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	20	29	+	12.101	2.46e-05	0.164	GGAGGGGTGA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	26	35	-	12.101	2.46e-05	0.164	GGAGGGGTGA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	52	61	-	12.101	2.46e-05	0.164	GGAGGGGGTA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	86	95	-	12.101	2.46e-05	0.164	GGAGGGGTGA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	98	107	+	12.101	2.46e-05	0.164	GGAGGGGTGA
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	69	84	+	-4.25	2.46e-05	0.317	CTGCGCCCCGCGTAGT
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	69	84	+	-4.25	2.46e-05	0.317	CTGCGCCCCGCGTAGT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	11	24	+	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	9	22	-	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	9	22	-	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	9	22	-	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	9	22	-	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	29	42	+	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	36	49	-	11.3103	2.46e-05	0.0236	GGCCCCGCCCCGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	56	75	+	6.93578	2.46e-05	0.0468	GCCCCCGTCACCCCCTCCCA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	-	12.4138	2.46e-05	0.0554	AGCCCTCCAGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	-	12.4138	2.46e-05	0.0554	TCCCTCCCGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	-	12.4138	2.46e-05	0.0554	TCCCTCCCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	-	12.4138	2.46e-05	0.0554	TCCCTCCCGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	+	12.4138	2.46e-05	0.0554	AGCCCTCCAGGGA
SP8	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	17	28	+	12.4342	2.46e-05	0.0208	ACCACGCCGCCC
CREB3	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	50	63	-	11.9143	2.46e-05	0.207	CTTCCACGTTATCC
GLIS2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	14	27	-	10.7377	2.46e-05	0.176	CGCCCCCCGCCGCC
ID4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	26	+	13.2787	2.46e-05	0.389	TGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	88	97	+	13.2787	2.46e-05	0.389	TGCACCTGTG
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	88	97	+	13.2787	2.46e-05	0.389	TGCACCTGTG
ID4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	98	-	13.2787	2.46e-05	0.389	TGCACCTGCG
DBP	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	+	13.2075	2.46e-05	1	TGTTACATAAGC
GCM2	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	100	109	+	12.6557	2.46e-05	0.718	GATGCGGGCC
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	49	63	+	12.2222	2.46e-05	0.397	CTATATAAAGGAGCT
TBP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	49	63	+	12.2222	2.46e-05	0.397	CTATATAAAGGAGCT
TBP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	49	63	+	12.2222	2.46e-05	0.397	CTATATAAAGGAGCT
TBP	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	52	66	-	12.2222	2.46e-05	0.397	CTATATAAAGGAGCT
EGR4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	9	24	+	12.0727	2.46e-05	0.0374	CCACCCCCTCGCATCC
EGR4	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	4	19	-	12.0727	2.46e-05	0.0374	CACTGCCCCCGCAAGA
EGR4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	11	26	-	12.0727	2.46e-05	0.0374	CCCCGCCCCTGCGCTG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	89	104	+	12.0727	2.46e-05	0.0374	CCCCGCCCCTGCGCTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	89	104	+	12.0727	2.46e-05	0.0374	CCCCGCCCCTGCGCTG
EGR4	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	96	111	+	12.0727	2.46e-05	0.0374	CACTGCCCCCGCAAGA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	42	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	42	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	38	47	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	38	47	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	63	72	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	68	77	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	83	92	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	98	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	101	110	+	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	5	14	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	17	26	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	17	26	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	20	29	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	23	32	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	23	32	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	23	32	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	37	46	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	37	46	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	38	47	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	43	52	-	13.0656	2.46e-05	0.229	TGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	68	77	-	13.0656	2.46e-05	0.229	TGTGACGTCA
CTCF	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	75	93	+	10.9508	2.46e-05	0.0911	GGGCCAGAAGGAGTTGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	88	106	+	10.9508	2.46e-05	0.0911	CCGCCGGTAGGCGGTGGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	88	106	+	10.9508	2.46e-05	0.0911	CCGCCGGTAGGCGGTGGCG
TFE3	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	12.2041	2.46e-05	0.107	ATCACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	12.2041	2.46e-05	0.107	AACACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	12.2041	2.46e-05	0.107	AACACGTGCC
TFE3	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	12.2041	2.46e-05	0.107	ATCACGTGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	9	19	+	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	9	19	+	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	16	26	+	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	24	34	+	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	18	28	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	24	34	-	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	24	34	-	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	29	39	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	29	39	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	29	39	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	33	43	-	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	45	55	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	47	57	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	58	68	+	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	60	70	+	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	54	64	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	54	64	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	54	64	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	54	64	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	68	78	-	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	81	91	+	11.6379	2.46e-05	0.0649	CCGCGCACGCG
EGR2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	87	97	+	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	89	99	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	90	100	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	90	100	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	90	100	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	90	100	-	11.6379	2.46e-05	0.0649	CCGCCTCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	91	101	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	91	101	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	91	101	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	91	101	-	11.6379	2.46e-05	0.0649	CCGCCCGCGCT
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	21	31	-	12.9808	2.46e-05	0.273	AATCTGACTCA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	28	48	-	11.3387	2.47e-05	0.154	GCAGACTTCCAGTTTCAGTAA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	28	48	-	11.3387	2.47e-05	0.154	GCAGACTTCCAGTTTCAGTAA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	35	53	+	12.2742	2.47e-05	0.137	GGAGTCAGTGAGCCGTGGG
PAX5	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	38	56	+	12.2742	2.47e-05	0.137	GCGGTCGGCAGCGCGTGAC
PAX5	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	59	77	-	12.2742	2.47e-05	0.137	GCGGTCGGCAGCGCGTGAC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.8966	2.47e-05	0.076	CCCGGAAGTG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr3:171543354..171543468,-__2092.1.0.0	44	57	+	8.61224	2.47e-05	0.0605	GGGGCTCTATGCGG
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	70	80	-	11.1379	2.47e-05	0.867	TGAAGGTCAGT
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	70	80	-	11.1379	2.47e-05	0.867	TGAAGGTCAGT
ESRRB	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	90	100	-	11.1379	2.47e-05	0.867	TGAAGGTCAGT
ESRRB	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	15	25	+	11.1379	2.47e-05	0.867	TGAAGGTCAGT
NRF1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	10	20	+	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	18	28	+	12.2545	2.47e-05	0.0119	CCGCGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	20	30	+	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	46	56	+	12.2545	2.47e-05	0.0119	CCGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	103	113	+	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	103	113	+	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	103	113	+	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	95	105	-	12.2545	2.47e-05	0.0119	GCGGGCGCGCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	57	66	+	13.1837	2.47e-05	0.0123	ACCCCACCCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	56	69	-	10.8636	2.47e-05	0.252	GGGGCCTGAGGTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	2	15	+	10.8636	2.47e-05	0.252	GGGGCCTGAGGTCA
ZBED1	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	59	71	+	9.07273	2.47e-05	1	CTGTCGCGACCCG
GSC2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	95	104	-	11.5254	2.47e-05	1	CTTAATCCTC
GSC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	95	104	-	11.5254	2.47e-05	1	CTTAATCCTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	50	67	+	-9.80263	2.47e-05	0.0324	TAAAAGAGGGAAGCAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	50	67	+	-9.80263	2.47e-05	0.0324	TAAAAGAGGGAAGCAGAG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	48	65	-	-9.80263	2.47e-05	0.0324	TAAAAGAGGGAAGCAGAG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	86	100	+	10.6429	2.47e-05	0.101	CACCGCCCGCTGCGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	15	29	-	10.6429	2.47e-05	0.101	CACCGCCCGCTGCGC
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	23	39	-	11.4868	2.47e-05	0.537	GCGCTGACGTCAGGGAG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	23	39	-	11.4868	2.47e-05	0.537	GCGCTGACGTCAGGGAG
Arid5a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	52	65	-	12.2857	2.47e-05	1	CTAATATTAGTAAG
Arid5a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	52	65	-	12.2857	2.47e-05	1	CTAATATTAGTAAG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	-	12.9636	2.47e-05	0.063	AGCCCTAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	-	12.9636	2.47e-05	0.063	AGCCCTAGGCG
EGR3	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	35	49	+	9.44828	2.47e-05	0.0302	TGACGCCCACCCCCG
EGR3	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	66	80	-	9.44828	2.47e-05	0.0302	TGACGCCCACCCCCG
HSF2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	13	25	+	11.3818	2.47e-05	1	TTCCGGAAGATTG
ZNF143	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	55	70	+	5.46552	2.47e-05	0.294	TACCCGCGGTGCATGG
ZNF143	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	45	60	-	5.46552	2.47e-05	0.294	TACCCGCGGTGCATGG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	83	98	+	5.46552	2.47e-05	0.294	TACCCGCGGTGCATGG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	-	10.0408	2.47e-05	0.102	CGTGACGTAACA
EBF1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	82	95	+	11.5738	2.47e-05	0.365	AGTCCCCTGGGCTT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	23	37	-	12.2	2.47e-05	0.0974	ACCCCCCCACCGAGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	23	37	-	12.2	2.47e-05	0.0974	ACCCCCCCACCGAGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	29	39	-	13.1897	2.47e-05	0.0435	AGGAGGGAGAA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	29	39	-	13.1897	2.47e-05	0.0435	AGGAGGGAGAA
TP73	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	+	11.0769	2.47e-05	0.609	TGCAAGCCGCCACTTGTT
TP73	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	+	11.0769	2.47e-05	0.609	TGCAAGCCGCCACTTGTT
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	+	11.0769	2.47e-05	0.609	TGCAAGCCGCCACTTGTT
TBX20	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	41	51	-	12.4848	2.47e-05	0.921	TAGGTGTGAGT
TBX20	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	64	74	+	12.4848	2.47e-05	0.921	TAGGTGTGAGT
TBX20	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	64	74	+	12.4848	2.47e-05	0.921	TAGGTGTGAGT
TBX20	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	64	74	+	12.4848	2.47e-05	0.921	TAGGTGTGAGT
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	64	74	+	12.4848	2.47e-05	0.921	TAGGTGTGAGT
SOX9	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	3	11	+	12.2073	2.47e-05	1	CTATTGTTT
SOX9	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	40	48	-	12.2073	2.47e-05	1	CTATTGTTT
SOX9	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	67	75	+	12.2073	2.47e-05	1	CTATTGTTT
SOX9	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	67	75	+	12.2073	2.47e-05	1	CTATTGTTT
SOX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	75	83	-	12.2073	2.47e-05	1	CTATTGTTT
SOX9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	75	83	-	12.2073	2.47e-05	1	CTATTGTTT
SOX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	90	98	+	12.2073	2.47e-05	1	CTATTGTTT
ELF3	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	16	28	+	10.9483	2.47e-05	0.125	GAACAGGAAGTGA
ELF3	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	37	49	-	10.9483	2.47e-05	0.125	ACCCAGGAAGTGA
ELF3	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	45	57	-	10.9483	2.47e-05	0.125	GAACAGGAAGTGA
ELF3	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	58	70	+	10.9483	2.47e-05	0.125	GAACAGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	66	78	+	10.9483	2.47e-05	0.125	ACCCAGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	66	78	+	10.9483	2.47e-05	0.125	ACCCAGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	66	78	+	10.9483	2.47e-05	0.125	ACCCAGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	66	78	+	10.9483	2.47e-05	0.125	ACCCAGGAAGTGA
ELF3	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	87	99	-	10.9483	2.47e-05	0.125	GAACAGGAAGTGA
Mafb	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	83	94	-	12.6629	2.47e-05	0.664	GTTGTGCTGACG
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	21	32	+	12.6629	2.47e-05	0.664	GTTGTGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	21	32	+	12.6629	2.47e-05	0.664	GTTGTGCTGACG
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	34	48	+	12.4138	2.47e-05	0.00771	TTCCCTCCCTCTCTC
SP2	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	60	+	12.4138	2.47e-05	0.00771	CCCCCTCCCCACCCA
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	67	81	-	12.4138	2.47e-05	0.00771	TTCCCTCCCTCTCTC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	77	86	-	12.7857	2.47e-05	0.0852	ATCGGAAATG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	77	86	-	12.7857	2.47e-05	0.0852	ATCGGAAATG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	27	43	-	11.8571	2.47e-05	0.338	AGGTCAGGCGCGGGTGG
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	27	43	-	11.8571	2.47e-05	0.338	AGGTCAGGCGCGGGTGG
Tcf12	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	52	+	13.449	2.47e-05	0.151	AGCAGCTGGCC
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	63	73	-	13.449	2.47e-05	0.151	AGCAGCTGGCC
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	63	73	-	13.449	2.47e-05	0.151	AGCAGCTGGCC
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	63	73	-	13.449	2.47e-05	0.151	AGCAGCTGGCC
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	63	73	-	13.449	2.47e-05	0.151	AGCAGCTGGCC
ELK4	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	46	56	+	12.9818	2.48e-05	0.0441	AGACTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	69	-	12.9818	2.48e-05	0.0441	AGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	69	-	12.9818	2.48e-05	0.0441	AGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	69	-	12.9818	2.48e-05	0.0441	AGACTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	69	-	12.9818	2.48e-05	0.0441	AGACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	104	114	+	12.9818	2.48e-05	0.0441	TCGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	104	114	+	12.9818	2.48e-05	0.0441	TCGCTTCCTGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	-	12.4426	2.48e-05	0.0554	CGCCCAAAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	-	12.4426	2.48e-05	0.0554	CGCCCAAAGGGCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	3	23	-	11.551	2.48e-05	0.0109	AGGGAAAGAATGAAGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	35	55	-	11.551	2.48e-05	0.0109	CGAGGAGCGGAGCAGGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	35	55	-	11.551	2.48e-05	0.0109	CGAGGAGCGGAGCAGGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	80	100	-	11.551	2.48e-05	0.0109	AATGCAGCAGGAGAGAGAGAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	15	35	+	11.551	2.48e-05	0.0109	AATGCAGCAGGAGAGAGAGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	24	44	+	11.551	2.48e-05	0.0109	GGGGGAAGAACCGGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	55	75	+	11.551	2.48e-05	0.0109	AGAGGAAGCACGTGGAGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	55	75	+	11.551	2.48e-05	0.0109	AGAGGAAGCACGTGGAGAAGG
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	87	103	-	3.86364	2.48e-05	0.424	ATTGTCACGGTGACCGG
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	11	20	+	10.9512	2.48e-05	0.956	AATTTCCATT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	11	20	+	10.9512	2.48e-05	0.956	AATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	66	75	-	10.9512	2.48e-05	0.956	TTTTTCCGCT
NFATC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	66	75	-	10.9512	2.48e-05	0.956	TTTTTCCGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	+	12.5082	2.48e-05	0.064	CGCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	+	12.5082	2.48e-05	0.064	CGCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	+	12.5082	2.48e-05	0.064	CGCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	+	12.5082	2.48e-05	0.064	CGCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	-	12.5082	2.48e-05	0.064	AGCCTGGAGGGCT
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	+	12.5918	2.48e-05	0.0857	TCCCCGCGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	-	12.5918	2.48e-05	0.0857	TCCCCGCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	-	12.5918	2.48e-05	0.0857	TCCCCGCGGGCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	5	22	-	-9.81579	2.48e-05	0.0324	AGGAGGAGTCAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	5	22	-	-9.81579	2.48e-05	0.0324	AGGAGGAGTCAAGGAAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	5	22	-	-9.81579	2.48e-05	0.0324	AGGAGGAGTCAAGGAAAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	42	59	-	-9.81579	2.48e-05	0.0324	GCACGAAGGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	42	59	-	-9.81579	2.48e-05	0.0324	GCACGAAGGGGAGGAGGG
SCRT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	67	79	+	9.91803	2.48e-05	0.673	GAGCAACACGTTC
SCRT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	67	79	+	9.91803	2.48e-05	0.673	GAGCAACACGTTC
SCRT2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	67	79	+	9.91803	2.48e-05	0.673	GAGCAACACGTTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	6	16	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	10	20	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	1	11	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	3	13	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	3	13	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	17	27	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	22	32	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	15	25	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	30	40	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	31	41	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	31	41	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	23	33	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	32	42	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	43	53	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	46	56	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	53	63	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	44	54	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	61	71	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	52	62	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	58	68	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	64	74	-	12.8654	2.48e-05	0.00879	GCCCCACCCAT
SP1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	83	93	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	88	98	-	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	102	112	+	12.8654	2.48e-05	0.00879	CTCCCTCCTCC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	30	44	-	12.75	2.48e-05	0.1	TGAGGAACCAATCGG
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	30	44	-	12.75	2.48e-05	0.1	TGAGGAACCAATCGG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	82	92	+	12.9091	2.48e-05	0.0475	CGCCTCAAGCC
SP3	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	19	29	+	12.4309	2.48e-05	0.0144	GCCACTCCCCG
SP3	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	48	58	+	12.4309	2.48e-05	0.0144	GCCACTCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	57	67	-	12.4309	2.48e-05	0.0144	GCCACTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	57	67	-	12.4309	2.48e-05	0.0144	GCCACTCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	57	67	-	12.4309	2.48e-05	0.0144	GCCACTCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	57	67	-	12.4309	2.48e-05	0.0144	GCCACTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	86	96	-	12.4309	2.48e-05	0.0144	GCCACTCCCCG
KLF14	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	56	69	-	11.2931	2.48e-05	0.0238	CACCACGCCCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	3	16	+	12.2692	2.48e-05	0.0135	CGGCTGCCCCCACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	20	33	+	12.2692	2.48e-05	0.0135	ATCCCTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	10	23	-	12.2692	2.48e-05	0.0135	CTGACGCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	10	23	-	12.2692	2.48e-05	0.0135	CTGACGCCCCCTGC
EGR1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	36	49	+	12.2692	2.48e-05	0.0135	AGACCGCCCCCGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	51	64	+	12.2692	2.48e-05	0.0135	TGCCCGCCCTCGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	51	64	+	12.2692	2.48e-05	0.0135	TGCCCGCCCTCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	51	64	+	12.2692	2.48e-05	0.0135	TGCCCGCCCTCGCA
EGR1	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	52	65	+	12.2692	2.48e-05	0.0135	CCCCCGCCCCTTTC
EGR1	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	50	63	-	12.2692	2.48e-05	0.0135	CCCCCGCCCCTTTC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	54	67	-	12.2692	2.48e-05	0.0135	CGGCCGCTCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	54	67	-	12.2692	2.48e-05	0.0135	CGGCCGCTCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	54	67	-	12.2692	2.48e-05	0.0135	CGGCCGCTCCCGCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	76	89	+	12.2692	2.48e-05	0.0135	GCCACACCCACACG
EGR1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	66	79	-	12.2692	2.48e-05	0.0135	AGACCGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	99	112	-	12.2692	2.48e-05	0.0135	CGGCTGCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	99	112	-	12.2692	2.48e-05	0.0135	CGGCTGCCCCCACC
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	72	84	+	12.7959	2.48e-05	0.301	GTGATGACGCCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	72	84	+	12.7959	2.48e-05	0.301	GTGATGACGCCAC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	12.2553	2.48e-05	0.0592	GCCGGAAGCC
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	99	113	+	11.8636	2.48e-05	0.241	AACCATGACAATGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	99	113	+	11.8636	2.48e-05	0.241	AACCATGACAATGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	99	113	+	11.8636	2.48e-05	0.241	AACCATGACAATGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	99	113	+	11.8636	2.48e-05	0.241	AACCATGACAATGCA
NRL	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	21	31	+	11.6923	2.48e-05	0.776	GGTCTGCTGAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	81	94	-	13.1154	2.48e-05	0.178	GCTGGATGAGTCAC
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	39	50	+	12.8305	2.48e-05	1	CATTATGCAACC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	39	50	+	12.8305	2.48e-05	1	CATTATGCAACC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	76	86	+	12.7879	2.48e-05	0.0428	GATCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	104	114	+	12.7879	2.48e-05	0.0428	AACCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	104	114	+	12.7879	2.48e-05	0.0428	AACCCCGCCCT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	3	13	+	13.0172	2.48e-05	0.76	GCCTGTTGACA
Foxo1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	28	38	+	13.0172	2.48e-05	0.76	GCCTGTTGACA
Foxo1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	77	87	-	13.0172	2.48e-05	0.76	GCCTGTTGACA
Foxo1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	102	112	-	13.0172	2.48e-05	0.76	GCCTGTTGACA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	95	107	-	13.3878	2.48e-05	0.12	TGCAGCTGCCGAC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	95	107	-	13.3878	2.48e-05	0.12	TGCAGCTGCCGAC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	95	107	-	13.3878	2.48e-05	0.12	TGCAGCTGCCGAC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	95	107	-	13.3878	2.48e-05	0.12	TGCAGCTGCCGAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	53	73	+	11.3226	2.48e-05	0.154	CTGGACTTCCTCTTTCATAAT
CTCF	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	4	22	+	10.9344	2.48e-05	0.0911	GCTCCGGGAGGGGGCGGGC
Rxra	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	5	18	+	6.28049	2.48e-05	0.331	GGGGTTAAGGGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	+	12.7885	2.49e-05	0.0703	TGCCTGAAGCA
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	-	12.5385	2.49e-05	0.765	ATTGCACAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	-	12.5385	2.49e-05	0.765	ATTGCACAAC
CEBPD	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	-	12.5385	2.49e-05	0.765	ATTGCACAAC
CEBPD	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	+	12.5385	2.49e-05	0.765	ATTGCACAAC
CEBPD	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	+	12.5385	2.49e-05	0.765	ATTGCACAAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	49	66	-	-9.82895	2.49e-05	0.0324	GAAAGGGAGGGACCTGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	49	66	-	-9.82895	2.49e-05	0.0324	GAAAGGGAGGGACCTGGG
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	1	11	+	12.4138	2.49e-05	0.0129	GCCGCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	64	74	+	12.4138	2.49e-05	0.0129	GACCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	41	51	-	12.4138	2.49e-05	0.0129	GACCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	41	51	-	12.4138	2.49e-05	0.0129	GACCCTCCCCT
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	+	12.6727	2.49e-05	0.0893	TCCCCGCGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	-	12.6727	2.49e-05	0.0893	TCCCCGCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	-	12.6727	2.49e-05	0.0893	TCCCCGCGGGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	39	53	-	9.43103	2.49e-05	0.0302	CCCCTCCCCCGCCAG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	39	53	-	9.43103	2.49e-05	0.0302	CCCCTCCCCCGCCAG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	68	82	+	9.43103	2.49e-05	0.0302	CCCCTCCCCCGCCAG
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	68	82	+	9.43103	2.49e-05	0.0302	CCCCTCCCCCGCCAG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	59	70	-	12.6061	2.49e-05	0.109	CGCGGTCCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	59	70	-	12.6061	2.49e-05	0.109	CGCGGTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	59	70	-	12.6061	2.49e-05	0.109	CGCGGTCCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	59	70	-	12.6061	2.49e-05	0.109	CGCGGTCCGCGT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	36	49	-	8.59184	2.49e-05	0.0608	CAGGCTAAAGGGGG
HES7	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	82	93	+	6.89655	2.49e-05	0.189	AGGCCCGTGCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	13	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	13	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	13	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	27	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	34	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	34	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	34	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	36	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	36	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	36	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	36	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	14	25	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	17	28	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	19	30	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	25	36	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	29	40	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	29	40	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	66	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	48	59	-	12.4211	2.49e-05	0.0208	TCCACGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	48	59	-	12.4211	2.49e-05	0.0208	TCCACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	48	59	-	12.4211	2.49e-05	0.0208	TCCACGCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	90	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	98	+	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	81	92	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
SP8	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	88	99	-	12.4211	2.49e-05	0.0208	CCCCCGCCCCGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	5	14	+	10.25	2.49e-05	0.043	GGCGCGCGAT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	5	14	+	10.25	2.49e-05	0.043	GGCGCGCGAT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	5	14	+	10.25	2.49e-05	0.043	GGCGCGCGAT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	5	14	+	10.25	2.49e-05	0.043	GGCGCGCGAT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	5	14	-	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	5	14	-	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	5	14	-	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	5	14	-	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	52	61	+	10.25	2.49e-05	0.043	GGCGCGCGAT
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	54	63	+	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	52	61	-	10.25	2.49e-05	0.043	ATCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	54	63	-	10.25	2.49e-05	0.043	GGCGCGCGAT
Foxd3	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	64	75	+	12.7609	2.49e-05	1	GATTGTTTTCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	53	68	-	12.0545	2.49e-05	0.0374	CTCCGCCGCCGCACCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	53	68	-	12.0545	2.49e-05	0.0374	CTCCGCCGCCGCACCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	53	68	-	12.0545	2.49e-05	0.0374	CTCCGCCGCCGCACCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	53	68	-	12.0545	2.49e-05	0.0374	CTCCGCCGCCGCACCA
RFX5	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	+	9.2931	2.49e-05	0.16	GGTGGCCCTGGAAACG
RFX5	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	-	9.2931	2.49e-05	0.16	GGTGGCCCTGGAAACG
XBP1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	80	93	+	11.9423	2.49e-05	0.446	AATACCACGTAACC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	-	12.4262	2.49e-05	0.0554	TGCCGGCAGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	-	12.4262	2.49e-05	0.0554	TGCCGGCAGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	-	12.4262	2.49e-05	0.0554	TGCCGGCAGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	-	12.4262	2.49e-05	0.0554	TGCCGGCAGGGCC
HIC2	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	40	48	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	65	73	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	69	77	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	69	77	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	99	107	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	104	112	+	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	3	11	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	3	11	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	3	11	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	3	11	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	11	19	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	42	50	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	42	50	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	42	50	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	42	50	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	42	50	-	11.9636	2.49e-05	0.266	ATGCCCAGC
HIC2	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	67	75	-	11.9636	2.49e-05	0.266	ATGCCCAGC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	55	66	-	12.3103	2.49e-05	0.33	GCGACCAGCCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	55	66	-	12.3103	2.49e-05	0.33	GCGACCAGCCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	55	66	-	12.3103	2.49e-05	0.33	GCGACCAGCCTG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	55	66	-	12.3103	2.49e-05	0.33	GCGACCAGCCTG
YY2	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	2	12	-	12.803	2.49e-05	0.269	CCCCGCCATTG
YY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	66	76	+	12.803	2.49e-05	0.269	CCCCGCCATTG
YY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	66	76	+	12.803	2.49e-05	0.269	CCCCGCCATTG
YY2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	104	114	-	12.803	2.49e-05	0.269	CCCCGCCATTG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	52	65	-	9.75	2.49e-05	0.56	GGGACAGCTGCTTG
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	52	65	-	9.75	2.49e-05	0.56	GGGACAGCTGCTTG
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	36	49	+	9.04878	2.49e-05	0.5	TGCGCACGCGTCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	36	49	+	9.04878	2.49e-05	0.5	TGCGCACGCGTCCC
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	35	50	+	12.3228	2.49e-05	1	TTGCATAAATAAAGAA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	+	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	+	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	-	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	-	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	-	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	-	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	-	12.5816	2.49e-05	0.0857	CGCCCCCAGGCC
Rarg	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	87	102	-	2	2.49e-05	0.877	CAGGACAAGAGTCCAC
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	78	91	-	10.7049	2.49e-05	0.176	CACCCCCCAGATGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	78	91	-	10.7049	2.49e-05	0.176	CACCCCCCAGATGG
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	12.4286	2.5e-05	0.205	ATCACGTGTC
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	12.4286	2.5e-05	0.205	ATCACGTGTC
SPI1	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	39	52	+	6.54545	2.5e-05	0.14	GGAAACGGGAACTG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	38	48	-	12.9016	2.5e-05	0.0432	CCGGAAGGGGT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	38	48	-	12.9016	2.5e-05	0.0432	CCGGAAGGGGT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	38	48	-	12.9016	2.5e-05	0.0432	CCGGAAGGGGT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	38	48	-	12.9016	2.5e-05	0.0432	CCGGAAGGGGT
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	55	-	12.9636	2.5e-05	0.0441	TAACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	60	70	+	12.9636	2.5e-05	0.0441	TAACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	60	70	+	12.9636	2.5e-05	0.0441	TAACTTCCGGG
Sox1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	43	+	7.55172	2.5e-05	1	TGCAATGATATTGTT
Sox1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	43	+	7.55172	2.5e-05	1	TGCAATGATATTGTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	5	19	+	12.3966	2.5e-05	0.00778	CGCCCTCCCTCCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	5	19	+	12.3966	2.5e-05	0.00778	CGCCCTCCCTCCCCT
NFIL3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	63	73	-	13.4848	2.5e-05	1	TTACGTAAGGC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	31	44	-	11.2759	2.5e-05	0.0238	AGACACACCCACCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	31	44	-	11.2759	2.5e-05	0.0238	AGACACACCCACCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	31	44	-	11.2759	2.5e-05	0.0238	AGACACACCCACCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	49	62	-	11.2759	2.5e-05	0.0238	AGACACACCCACCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	49	62	-	11.2759	2.5e-05	0.0238	AGACACACCCACCA
KLF14	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	61	74	-	11.2759	2.5e-05	0.0238	AGCCACGCCCCAGC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	34	45	+	12.4592	2.5e-05	0.146	GGTCTGCGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	34	45	+	12.4592	2.5e-05	0.146	GGTCTGCGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	34	45	+	12.4592	2.5e-05	0.146	GGTCTGCGGGCG
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	73	92	-	6.88991	2.5e-05	0.0468	CAACAAACCAACTGACCAAC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	29	41	-	5.95918	2.5e-05	0.233	GGGGGATTCCTCC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	31	43	-	5.95918	2.5e-05	0.233	ATGGGAACCCCCC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	31	43	-	5.95918	2.5e-05	0.233	ATGGGAACCCCCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	64	+	12.4918	2.5e-05	0.064	CGCCCCCCGGGGT
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	51	63	-	12.4918	2.5e-05	0.064	CGCCCCCCGGGGT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	-	12.4918	2.5e-05	0.064	CGCCCCCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	-	12.4918	2.5e-05	0.064	CGCCCCCCCGGCA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	100	114	-	12.1818	2.5e-05	0.0974	GGCCACCTGCCGCTG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	100	114	-	12.1818	2.5e-05	0.0974	GGCCACCTGCCGCTG
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	48	59	-	10.1273	2.5e-05	0.522	GCTTTAAATAGT
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	69	80	+	10.1273	2.5e-05	0.522	GCTTTAAATAGT
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	76	90	+	12.1429	2.5e-05	0.507	AGGTAATGTTTAACG
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	76	90	+	12.1429	2.5e-05	0.507	AGGTAATGTTTAACG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	8	17	-	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	43	52	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	43	52	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	38	47	-	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	48	57	-	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	58	67	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	68	77	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	68	77	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	68	77	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	68	77	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	71	80	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	71	80	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	74	-	12.8846	2.5e-05	0.0761	CCAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	84	93	+	12.8846	2.5e-05	0.0761	CCAGGAAGTG
T	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	76	91	-	10.4231	2.5e-05	1	TGACACATGAATGAGA
T	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	76	91	-	10.4231	2.5e-05	1	TGACACATGAATGAGA
T	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	76	91	-	10.4231	2.5e-05	1	TGACACATGAATGAGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	65	75	+	12.9455	2.5e-05	0.063	ACCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	65	75	+	12.9455	2.5e-05	0.063	ACCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	65	75	+	12.9455	2.5e-05	0.063	ACCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	65	75	+	12.9455	2.5e-05	0.063	ACCCCCAGGCT
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	37	49	-	12.0328	2.5e-05	0.506	GGCTGATGCCACC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	37	49	-	12.0328	2.5e-05	0.506	GGCTGATGCCACC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	37	49	-	12.0328	2.5e-05	0.506	GGCTGATGCCACC
ATF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	37	49	-	12.0328	2.5e-05	0.506	GGCTGATGCCACC
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	20	32	+	10.931	2.5e-05	0.125	CGCCCGGAAGTGG
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	20	32	+	10.931	2.5e-05	0.125	CGCCCGGAAGTGG
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	23	35	-	10.931	2.5e-05	0.125	CGCCCGGAAGTGG
ELF3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	80	92	+	10.931	2.5e-05	0.125	CGCCCGGAAGTGG
ELF3	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	83	95	-	10.931	2.5e-05	0.125	CGCCCGGAAGTGG
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	37	53	-	8.53191	2.5e-05	0.952	GAGGACGAAACGTCCCG
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	37	53	-	8.53191	2.5e-05	0.952	GAGGACGAAACGTCCCG
Klf12	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	25	39	+	10.8689	2.5e-05	0.0422	TGCCCCGCCCCCTCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	67	81	+	10.8689	2.5e-05	0.0422	TGCCCCGCCCCCCCC
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	18	30	+	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	18	30	+	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	18	30	+	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	41	53	-	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	41	53	-	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	41	53	-	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
SCRT2	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	62	74	+	9.88525	2.5e-05	0.673	AAGCAACAGGCTG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	4	18	+	9.41379	2.5e-05	0.0302	CCCCGCCCACCCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	16	30	-	9.41379	2.5e-05	0.0302	GGCCGCCCGCGCTCC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	24	38	-	9.41379	2.5e-05	0.0302	CTCCGCCCCCTCCAC
EGR3	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	56	70	+	9.41379	2.5e-05	0.0302	GGCCGCCCGCGCTCC
EGR3	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	45	59	-	9.41379	2.5e-05	0.0302	GGCCGCCCGCGCTCC
EGR3	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	85	99	+	9.41379	2.5e-05	0.0302	GGCCGCCCGCGCTCC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	35	49	-	12.7308	2.5e-05	0.1	AGCACAGCCAATCAC
NFYB	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	66	80	+	12.7308	2.5e-05	0.1	AGCACAGCCAATCAC
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	+	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	+	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	+	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	+	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	-	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	-	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
BATF3	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	-	4.75758	2.5e-05	0.126	CCGTGACGTCACAA
CTCF	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	9	27	-	10.918	2.5e-05	0.0911	TTTCCTGCAGTGGGCACGG
CTCF	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	25	43	-	10.918	2.5e-05	0.0911	TTTCCTGCAGTGGGCACGG
CTCF	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	72	90	+	10.918	2.5e-05	0.0911	TTTCCTGCAGTGGGCACGG
CTCF	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	88	106	+	10.918	2.5e-05	0.0911	TTTCCTGCAGTGGGCACGG
Zfx	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	5	18	-	12.803	2.5e-05	0.0376	AAGACCCCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	15	28	-	12.803	2.5e-05	0.0376	TAGAGCGCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	15	28	-	12.803	2.5e-05	0.0376	TAGAGCGCGGCCTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	1	21	-	11.5306	2.5e-05	0.011	GGAACAGGACAAAAAGGTGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	1	21	-	11.5306	2.5e-05	0.011	GGAACAGGACAAAAAGGTGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	16	36	-	11.5306	2.5e-05	0.011	AGGGGGAGGAGGGAGGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	24	44	-	11.5306	2.5e-05	0.011	GAGGGTGGGAGGGGAAGTTAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	76	96	-	11.5306	2.5e-05	0.011	AGATGAAGAAAGAAGAGAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	19	39	+	11.5306	2.5e-05	0.011	TGAGGCTGGGGGTGGGGAAGT
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	79	99	+	11.5306	2.5e-05	0.011	AGGGGGAGGAGGGAGGGAGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	94	114	+	11.5306	2.5e-05	0.011	GGAACAGGACAAAAAGGTGGA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	+	12.3793	2.5e-05	0.0554	TCCCTGGAGGGCT
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	-	12.3793	2.5e-05	0.0554	CGCCTGCAGGGCG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	+	12.3793	2.5e-05	0.0554	CGCCTGCAGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	-	12.3793	2.5e-05	0.0554	TCCCTGGAGGGCT
SREBF2	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	23	32	-	13.0674	2.5e-05	0.871	CTGGGCTGAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	7	24	+	-9.85526	2.5e-05	0.0324	GGGAGGGAGGGAACTAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	7	24	+	-9.85526	2.5e-05	0.0324	GGGAGGGAGGGAACTAGC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	40	59	-	6.88073	2.5e-05	0.0468	CAAAAAAACAACAACAAAAC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	29	42	-	12.25	2.5e-05	0.0137	GCACCGCCCCCATG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	29	42	-	12.25	2.5e-05	0.0137	GCACCGCCCCCATG
EGR1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	86	99	-	12.25	2.5e-05	0.0137	CTCTCGCCGCCGCC
Foxa2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	69	+	12.92	2.51e-05	0.884	TGTTTACAGAGA
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	23	32	+	11.7439	2.51e-05	0.488	GCAATCACTG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	79	88	-	11.7439	2.51e-05	0.488	GCAATCACTG
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	94	108	-	12.2973	2.51e-05	0.149	GGGGGCCAGAGAGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	75	85	-	12.2364	2.51e-05	0.0121	CAGCATGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	98	108	-	12.2364	2.51e-05	0.0121	GCGCATGCGAG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	98	108	-	12.2364	2.51e-05	0.0121	GCGCATGCGAG
TP63	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	67	84	+	2.65517	2.51e-05	0.569	AACATGTTTTTTCAAGTT
TP63	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	67	84	+	2.65517	2.51e-05	0.569	AACATGTTTTTTCAAGTT
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	13.1515	2.51e-05	1	AGCATATGCC
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	13.1515	2.51e-05	1	AGCATATGCC
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	66	79	+	7.12121	2.51e-05	0.379	CGCCCCCCAAGATG
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	20	33	-	7.12121	2.51e-05	0.379	CGCCCCCCAAGATG
ZBTB7A	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	95	106	-	12.6	2.51e-05	0.217	GGCGCCCACTGC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	9	20	+	12.6	2.51e-05	0.217	GGCGCCCACTGC
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	83	94	+	12.6	2.51e-05	0.217	TGCGCCCACATA
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	24	-	12.4727	2.51e-05	0.118	ATCCGGAAGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	75	84	+	12.3621	2.51e-05	0.16	GGCGCGTGTC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	75	84	+	12.3621	2.51e-05	0.16	GGCGCGTGTC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	75	84	+	12.3621	2.51e-05	0.16	GGCGCGTGTC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	75	84	+	12.3621	2.51e-05	0.16	GGCGCGTGTC
Creb5	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	53	+	11.5455	2.51e-05	0.134	TTTGACGTCATC
Creb5	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	73	-	11.5455	2.51e-05	0.134	TTTGACGTCATC
FOXA1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	55	69	+	13.0408	2.51e-05	0.736	CGCTTATTTGCATAG
FOXA1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	46	60	-	13.0408	2.51e-05	0.736	CGCTTATTTGCATAG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	14	23	-	11.8163	2.51e-05	0.158	AATCACGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	14	23	-	11.8163	2.51e-05	0.158	AATCACGTGA
Mitf	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	31	40	-	11.8163	2.51e-05	0.158	AATCACGTGA
Mitf	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	75	84	+	11.8163	2.51e-05	0.158	AATCACGTGA
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	44	57	-	9.23404	2.51e-05	0.0959	GCCCACCCGCCGTC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	44	57	-	9.23404	2.51e-05	0.0959	GCCCACCCGCCGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	66	79	+	9.23404	2.51e-05	0.0959	GCCCACCCGCCGTC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	66	79	+	9.23404	2.51e-05	0.0959	GCCCACCCGCCGTC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	16	27	+	12.6034	2.51e-05	0.365	AGGACCACCAAT
ESR2	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	31	45	-	12.4038	2.51e-05	0.426	AGGTCACGCTCCTCC
ESR2	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	36	50	-	12.4038	2.51e-05	0.426	AGGTCACGCTCCTCC
ESR2	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	65	79	+	12.4038	2.51e-05	0.426	AGGTCACGCTCCTCC
ESR2	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	70	84	+	12.4038	2.51e-05	0.426	AGGTCACGCTCCTCC
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	84	95	-	11.5	2.51e-05	1	CAAGTTCAAAGA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	41	+	12.4694	2.51e-05	0.285	CGGCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	41	+	12.4694	2.51e-05	0.285	CGGCACGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	41	+	12.4694	2.51e-05	0.285	CGGCACGTGGC
SOX21	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	-	5.08163	2.51e-05	1	TACAATTTAATTGTC
SOX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	+	5.08163	2.51e-05	1	TACAATTTAATTGTC
SOX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	+	5.08163	2.51e-05	1	TACAATTTAATTGTC
RREB1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	11	30	-	6.87156	2.51e-05	0.0468	TACCCACCCACCATCCCCCA
RREB1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	85	104	+	6.87156	2.51e-05	0.0468	TACCCACCCACCATCCCCCA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	26	36	-	12.8852	2.51e-05	0.0432	CCGGAAGAGAG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	+	12.4098	2.51e-05	0.0554	ACCCCGGCGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	-	12.4098	2.51e-05	0.0554	ACCCCGGCGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	-	12.4098	2.51e-05	0.0554	ACCCCGGCGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	-	12.4098	2.51e-05	0.0554	ACCCCGGCGGGGA
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	44	57	+	13.0962	2.51e-05	0.178	AGAAGGTGAGTCAA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	58	71	-	13.0962	2.51e-05	0.178	AGAAGGTGAGTCAA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	58	71	-	13.0962	2.51e-05	0.178	AGAAGGTGAGTCAA
POU2F1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	45	56	+	12.51	2.51e-05	1	CCTATGCAAATA
POU2F1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	59	70	-	12.51	2.51e-05	1	CCTATGCAAATA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	20	36	-	11.8265	2.51e-05	0.338	GGGTCGGGGGCGGGTCG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	20	36	-	11.8265	2.51e-05	0.338	GGGTCGGGGGCGGGTCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	31	41	-	12.3793	2.51e-05	0.0129	TACCCGCCCAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	20	38	-	12.2419	2.51e-05	0.137	GAAACCGGCAAGGCAGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	20	38	-	12.2419	2.51e-05	0.137	GAAACCGGCAAGGCAGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	20	38	-	12.2419	2.51e-05	0.137	GAAACCGGCAAGGCAGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	20	38	-	12.2419	2.51e-05	0.137	GAAACCGGCAAGGCAGGGC
SP4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	3	19	+	7.29091	2.52e-05	0.0183	CTCTCCCCGCCCCCAGG
SP4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	24	40	+	7.29091	2.52e-05	0.0183	CACGTCACGCCCACCGC
SP4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	96	112	-	7.29091	2.52e-05	0.0183	CTCTCCCCGCCCCCAGG
KLF14	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	33	46	-	11.2586	2.52e-05	0.0239	GGCCACGCTCCTCC
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	72	84	-	12.1	2.52e-05	0.729	CTTCCTGATGTTG
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	72	84	-	12.1	2.52e-05	0.729	CTTCCTGATGTTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	71	82	-	12.2931	2.52e-05	0.33	ACTACCACACTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	71	82	-	12.2931	2.52e-05	0.33	ACTACCACACTG
Nkx2-5(var.2)	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	1	11	-	13.0182	2.52e-05	0.721	AGCCTCTCCAG
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	26	35	-	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	45	54	-	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	50	59	-	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	60	69	-	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	33	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	39	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	37	46	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	37	46	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	55	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	60	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	56	65	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	56	65	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	56	65	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	56	65	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	56	65	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	61	70	+	13.1224	2.52e-05	0.0124	GTCCCGCCCA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	85	95	-	13.4286	2.52e-05	0.151	GGCAGCTGGTA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	85	95	-	13.4286	2.52e-05	0.151	GGCAGCTGGTA
FEV	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12.7308	2.52e-05	0.0872	GCCGGAAATG
FEV	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12.7308	2.52e-05	0.0872	GCCGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12.7308	2.52e-05	0.0872	GCCGGAAATG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12.7308	2.52e-05	0.0872	GCCGGAAATG
FEV	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12.7308	2.52e-05	0.0872	GCCGGAAATG
SP8	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	1	12	-	12.4079	2.52e-05	0.021	CCCCCACCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	103	114	+	12.4079	2.52e-05	0.021	CCCCCACCCCCC
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	13	26	+	11.9231	2.52e-05	0.446	AGAGCTACGTCATA
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	13	26	+	11.9231	2.52e-05	0.446	AGAGCTACGTCATA
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	86	99	-	11.9231	2.52e-05	0.446	AGAGCTACGTCATA
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	86	99	-	11.9231	2.52e-05	0.446	AGAGCTACGTCATA
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	20	32	+	12.5574	2.52e-05	0.359	CTGTCTCACAGTC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	24	39	+	12.0364	2.52e-05	0.0374	TCCCTCCCACCCCCAG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	30	45	-	12.0364	2.52e-05	0.0374	TCACGCACGCGCACTA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	30	45	-	12.0364	2.52e-05	0.0374	TCACGCACGCGCACTA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	30	45	-	12.0364	2.52e-05	0.0374	TCACGCACGCGCACTA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	30	45	-	12.0364	2.52e-05	0.0374	TCACGCACGCGCACTA
EGR4	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	70	85	+	12.0364	2.52e-05	0.0374	TCACGCACGCGCACTA
ETV3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	12.5634	2.52e-05	0.0942	CCCGGATGTG
DBP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	+	13.1698	2.52e-05	1	CCTTACGTAATT
SP2	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	17	31	+	12.3793	2.52e-05	0.00783	TCTCCACCCCTCCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	27	41	+	12.3793	2.52e-05	0.00783	CCACCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	89	+	12.3793	2.52e-05	0.00783	TCCCCACCCCTTCTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	89	+	12.3793	2.52e-05	0.00783	TCCCCACCCCTTCTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	89	+	12.3793	2.52e-05	0.00783	TCCCCACCCCTTCTT
SP2	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	84	98	-	12.3793	2.52e-05	0.00783	TCTCCACCCCTCCCG
JUND	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	4	14	+	13.0213	2.52e-05	0.169	AGTGACTCAGG
JUND	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	+	13.0213	2.52e-05	0.169	GGTGAGTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	+	13.0213	2.52e-05	0.169	GGTGAGTCAGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	72	82	-	13.0213	2.52e-05	0.169	AGTGACTCAGG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	+	13.0213	2.52e-05	0.169	GGTGAGTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	+	13.0213	2.52e-05	0.169	GGTGAGTCAGC
JUND	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	101	111	-	13.0213	2.52e-05	0.169	AGTGACTCAGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	27	41	-	10.8525	2.52e-05	0.0423	GGCCCCGCCCCGGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	27	41	-	10.8525	2.52e-05	0.0423	GGCCCCGCCCCGGCC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	30	39	-	12.36	2.52e-05	0.744	ATTACACAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	30	39	-	12.36	2.52e-05	0.744	ATTACACAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	40	49	+	12.36	2.52e-05	0.744	ATTACACAAT
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	40	49	+	12.36	2.52e-05	0.744	ATTACACAAT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	27	46	-	6.86239	2.52e-05	0.0468	CCACCCACCGCCTCCCTCCC
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	69	88	+	6.86239	2.52e-05	0.0468	CCACCCACCGCCTCCCTCCC
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	20	34	-	11.082	2.52e-05	0.325	ATGACACAGCTGCCC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	20	34	-	11.082	2.52e-05	0.325	ATGACACAGCTGCCC
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	20	34	-	11.082	2.52e-05	0.325	ATGACACAGCTGCCC
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	20	34	-	11.082	2.52e-05	0.325	ATGACACAGCTGCCC
SRY	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	5	13	-	11.6222	2.52e-05	1	GAAAACAAT
SRY	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	38	46	-	11.6222	2.52e-05	1	GAAAACAAT
SRY	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	65	73	-	11.6222	2.52e-05	1	GAAAACAAT
SRY	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	77	85	-	11.6222	2.52e-05	1	GAAAACAAT
PRDM1	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	20	34	+	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	81	95	-	12.2364	2.52e-05	0.273	AGCAAGAGAAAATGA
Pou2f3	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	9	24	-	12.5854	2.52e-05	0.759	CAGTATGCAAAATAGG
Nkx3-1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	87	95	-	12.8545	2.52e-05	1	GCCACTTAG
NKX3-2	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	87	95	-	12.5962	2.52e-05	1	GCCACTTAG
Nkx3-1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	20	28	+	12.8545	2.52e-05	1	GCCACTTAG
Nkx3-1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	104	112	+	12.8545	2.52e-05	1	AGCACTTAA
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	104	112	+	12.8545	2.52e-05	1	AGCACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	104	112	+	12.8545	2.52e-05	1	AGCACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	104	112	+	12.8545	2.52e-05	1	AGCACTTAA
NKX3-2	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	20	28	+	12.5962	2.52e-05	1	GCCACTTAG
BCL6B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	85	101	+	-11.1571	2.52e-05	0.94	TGTTTGCCAGGCACTGA
BCL6B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.1	85	101	+	-11.1571	2.52e-05	0.94	TGTTTGCCAGGCACTGA
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.0	85	101	+	-11.1571	2.52e-05	0.94	TGTTTGCCAGGCACTGA
Nr2f6	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	60	73	-	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	42	55	+	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	42	55	+	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	42	55	+	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	42	55	+	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	42	55	+	10.8182	2.52e-05	0.252	GCGGGCGAAGGTCA
Foxa2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.1	67	78	+	12.91	2.52e-05	0.884	TGTTTGCATAGT
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	67	78	+	12.91	2.52e-05	0.884	TGTTTGCATAGT
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.0	67	78	+	12.91	2.52e-05	0.884	TGTTTGCATAGT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	59	76	-	-9.88158	2.52e-05	0.0324	GGGAGGAAAGGAGGGGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	86	103	-	-9.88158	2.52e-05	0.0324	GGAAGGAATGAGAGCAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	86	103	-	-9.88158	2.52e-05	0.0324	GGAAGGAATGAGAGCAAA
RUNX1	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	69	79	+	12.5517	2.52e-05	0.215	AGTTGTGGTTT
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	77	87	-	12.4545	2.52e-05	0.921	GAAGTGTGAAA
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	26	36	+	12.4545	2.52e-05	0.921	GAAGTGTGAAA
TBX20	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	68	78	+	12.4545	2.52e-05	0.921	AAGGTGTGAGC
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	68	78	+	12.4545	2.52e-05	0.921	AAGGTGTGAGC
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	68	78	+	12.4545	2.52e-05	0.921	AAGGTGTGAGC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	33	47	-	12.1636	2.52e-05	0.0974	CCCCACCCGCTGCTG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	42	56	-	12.1636	2.52e-05	0.0974	CGCCTCCCGCAGTTC
NFYA	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	34	51	+	11.4634	2.52e-05	0.101	TGCTCCCTCATTGGCCAG
TFAP2B	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	23	34	+	12.6545	2.53e-05	0.0893	CCCCTCCAGGCA
TFAP2B	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	+	12.6545	2.53e-05	0.0893	TGCCTTCAGGCT
TFAP2B	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	-	12.6545	2.53e-05	0.0893	TGCCTTCAGGCT
TFAP2B	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	92	-	12.6545	2.53e-05	0.0893	CCCCTCCAGGCA
GSC	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	2	11	+	12.1698	2.53e-05	1	CCTAATCCTT
GSC	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	69	78	-	12.1698	2.53e-05	1	CCTAATCCTT
GSC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	104	113	-	12.1698	2.53e-05	1	CCTAATCCTT
GSC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	104	113	-	12.1698	2.53e-05	1	CCTAATCCTT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	16	26	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	16	26	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	16	26	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	16	26	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	30	40	-	12.8269	2.53e-05	0.00879	GCTCCTCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	44	54	-	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	61	71	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	62	72	+	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	60	70	-	12.8269	2.53e-05	0.00879	TCCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	60	70	-	12.8269	2.53e-05	0.00879	TCCCCACCCCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	20	30	-	13.4286	2.53e-05	0.119	CACAGCTGCCC
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	20	30	-	13.4286	2.53e-05	0.119	CACAGCTGCCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	20	30	-	13.4286	2.53e-05	0.119	CACAGCTGCCC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	20	30	-	13.4286	2.53e-05	0.119	CACAGCTGCCC
RREB1	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	25	44	-	6.85321	2.53e-05	0.0468	AAAAAAAACACCAACAACAA
RREB1	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	71	90	+	6.85321	2.53e-05	0.0468	AAAAAAAACACCAACAACAA
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	30	-	11.8163	2.53e-05	0.338	GGGGGAGGGGGAGGGGA
Twist2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	15	24	-	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	15	24	-	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	39	48	+	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	39	48	+	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	93	102	+	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	93	102	+	12.9344	2.53e-05	1	GCCATGTGTG
Twist2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	93	102	+	12.9344	2.53e-05	1	GCCATGTGTG
Srebf1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	12.069	2.53e-05	0.188	GCCACGTGAC
MLXIPL	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	13.1061	2.53e-05	0.171	GTCACGTGTC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	13.1061	2.53e-05	0.171	GTCACGTGTC
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	13.1061	2.53e-05	0.171	GTCACGTGTC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	12.069	2.53e-05	0.188	GCCACGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	12.069	2.53e-05	0.188	GCCACGTGAC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	13.1061	2.53e-05	0.171	GTCACGTGTC
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	13.1061	2.53e-05	0.171	GTCACGTGTC
MLXIPL	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	13.1061	2.53e-05	0.171	GTCACGTGTC
IRF8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	80	93	-	2.25455	2.53e-05	0.568	CTGAAAGTGAACGC
IRF8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	80	93	-	2.25455	2.53e-05	0.568	CTGAAAGTGAACGC
SP4	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	12	28	+	7.27273	2.53e-05	0.0183	AAAGTCCCGCCCCTCAT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	20	36	+	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	20	36	+	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	20	36	+	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	20	36	+	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	12	28	-	7.27273	2.53e-05	0.0183	CCCGCCCCGCCCCAGCA
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	22	38	-	7.27273	2.53e-05	0.0183	CCCACCCCGCCCTCACC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	23	39	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	23	39	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	31	47	-	7.27273	2.53e-05	0.0183	CCTGCCCCCCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	43	59	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	43	59	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	43	59	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	43	59	-	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
SP4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	72	88	+	7.27273	2.53e-05	0.0183	TGCGCTCCGCCCCCTGG
SP4	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	76	92	+	7.27273	2.53e-05	0.0183	GAAGACCCGCCCTTGTG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	8	18	+	12.9455	2.53e-05	0.0441	TCGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	8	18	+	12.9455	2.53e-05	0.0441	TCGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	24	34	-	12.9455	2.53e-05	0.0441	CCATTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	24	34	-	12.9455	2.53e-05	0.0441	CCATTTCCGCC
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	107	-	12.9455	2.53e-05	0.0441	TCGCTTCCGCT
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	14	24	-	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	14	24	-	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	14	24	-	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	14	24	-	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	68	78	-	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	37	47	+	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
USF2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	91	101	+	13.1429	2.53e-05	0.0881	GCCAGGTGGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	18	31	-	12.2308	2.53e-05	0.0137	CGCCCTCTCCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	34	47	+	12.2308	2.53e-05	0.0137	AGGCCGCCCCCTGC
EGR1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	68	81	-	12.2308	2.53e-05	0.0137	AGGCCGCCCCCTGC
EGR1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	84	97	+	12.2308	2.53e-05	0.0137	CGCCCTCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	84	97	+	12.2308	2.53e-05	0.0137	GCGCCTCTCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	84	97	+	12.2308	2.53e-05	0.0137	GCGCCTCTCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	84	97	+	12.2308	2.53e-05	0.0137	GCGCCTCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	84	97	+	12.2308	2.53e-05	0.0137	GCGCCTCTCCCTCC
NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	+	9.61224	2.53e-05	0.195	GATGAGTCACA
NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	-	9.61224	2.53e-05	0.195	GATGAGTCACA
NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	+	9.61224	2.53e-05	0.195	GATGAGTCACA
NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	-	9.61224	2.53e-05	0.195	GATGAGTCACA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	13	33	-	11.5102	2.53e-05	0.0111	GATGCGGGGGAGGGGGGGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	16	36	-	11.5102	2.53e-05	0.0111	AGAGAAGGTATGGAGGGAGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	43	63	-	11.5102	2.53e-05	0.0111	GATGCGGGGGAGGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	49	69	-	11.5102	2.53e-05	0.0111	GATGCGGGGGAGGGGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	56	76	-	11.5102	2.53e-05	0.0111	GGAGGCGCCCGATGGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	56	76	-	11.5102	2.53e-05	0.0111	GGAGGCGCCCGATGGGAGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	81	101	-	11.5102	2.53e-05	0.0111	GGAGGGAAAGGGGGAGGAGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	46	66	+	11.5102	2.53e-05	0.0111	GATGCGGGGGAGGGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	52	72	+	11.5102	2.53e-05	0.0111	GATGCGGGGGAGGGGGGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	79	99	+	11.5102	2.53e-05	0.0111	AGAGAAGGTATGGAGGGAGGC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	86	-	11.5429	2.53e-05	0.099	TCAGGGCAAAGTCCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	86	-	11.5429	2.53e-05	0.099	TCAGGGCAAAGTCCA
RXRA::VDR	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	63	77	-	8.91743	2.53e-05	1	GGTTCAAGGGCTTCC
RXRA::VDR	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	38	52	+	8.91743	2.53e-05	1	GGTTCAAGGGCTTCC
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	49	66	+	-9.89474	2.53e-05	0.0324	GGGAGGAATGCGGCAGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	72	89	+	-9.89474	2.53e-05	0.0324	GGGAGGAATGCGGCAGGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	26	43	-	-9.89474	2.53e-05	0.0324	GGGAGGAATGCGGCAGGC
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	49	66	-	-9.89474	2.53e-05	0.0324	GGGAGGAATGCGGCAGGC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	16	30	+	10.0921	2.53e-05	0.176	CTCCTGAGTGAGCAG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	85	99	-	10.0921	2.53e-05	0.176	CTCCTGAGTGAGCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	85	99	-	10.0921	2.53e-05	0.176	CTCCTGAGTGAGCAG
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	82	96	+	9.37931	2.53e-05	0.0305	TCCCTCCCACACACC
USF1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	65	75	-	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	85	95	-	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	100	110	-	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	15	+	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	30	+	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	50	+	12.8367	2.53e-05	0.115	GTCACGTGTCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	59	+	12.8367	2.53e-05	0.115	CTCAGGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	59	+	12.8367	2.53e-05	0.115	CTCAGGTGACC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	61	70	+	12.8878	2.53e-05	0.189	CGGAAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	61	70	+	12.8878	2.53e-05	0.189	CGGAAATTCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	+	12.3934	2.53e-05	0.0554	TGCCTTGCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	+	12.3934	2.53e-05	0.0554	TGCCTTGCAGGCA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	-	12.3934	2.53e-05	0.0554	AGCCCTCCAGGGA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	-	12.3934	2.53e-05	0.0554	TGCCTTGCAGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	-	12.3934	2.53e-05	0.0554	ACCCCCTAGGGCC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	+	12.3934	2.53e-05	0.0554	AGCCCTCCAGGGA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	33	46	+	11.2414	2.53e-05	0.024	GCGCACGCCCCCCG
KLF14	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	22	35	-	11.2414	2.53e-05	0.024	GGCCCCTCCCACCT
KLF14	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	80	93	+	11.2414	2.53e-05	0.024	GGCCCCTCCCACCT
RREB1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	41	60	-	6.84404	2.53e-05	0.0468	CCCCCAGCCCCCACCCTCGG
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	44	63	-	6.84404	2.53e-05	0.0468	CCCCCCCTCCCCCGCATCAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	50	69	-	6.84404	2.53e-05	0.0468	CCCCCCCTCCCCCGCATCAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	16	35	+	6.84404	2.53e-05	0.0468	CCCCCCCTCCCCCGCATCAC
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	46	65	+	6.84404	2.53e-05	0.0468	CCCCCCCTCCCCCGCATCAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	52	71	+	6.84404	2.53e-05	0.0468	CCCCCCCTCCCCCGCATCAC
RREB1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	55	74	+	6.84404	2.53e-05	0.0468	CCCCCAGCCCCCACCCTCGG
GCM1	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	81	91	-	12.551	2.53e-05	0.531	GCTGCGGGCAC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	85	95	-	12.551	2.53e-05	0.531	GCTGCGGGCAC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	85	95	-	12.551	2.53e-05	0.531	GCTGCGGGCAC
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	14	24	+	12.551	2.53e-05	0.531	GCTGCGGGCAC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	14	24	+	12.551	2.53e-05	0.531	GCTGCGGGCAC
GCM1	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	24	34	+	12.551	2.53e-05	0.531	GCTGCGGGCAC
Hes1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	14	23	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	36	45	-	10.6364	2.53e-05	0.0721	CGCACGCGCT
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	45	54	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	45	54	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	58	67	-	10.6364	2.53e-05	0.0721	CGCACGCGCT
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	58	67	-	10.6364	2.53e-05	0.0721	CGCACGCGCT
Hes1	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	85	94	+	10.6364	2.53e-05	0.0721	CGCACGCGCT
Hes1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	92	101	+	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	96	105	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	96	105	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	96	105	-	10.6364	2.53e-05	0.0721	TCCACGCGCC
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	18	31	-	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	18	31	-	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	18	31	-	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	18	31	-	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	101	114	+	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	101	114	+	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	101	114	+	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	101	114	+	11.8571	2.54e-05	0.207	CGGAGACGTCATTG
Stat4	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	93	106	+	12.9828	2.54e-05	0.208	CTGACGGGAAGGCG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	62	77	-	-4.38462	2.54e-05	0.317	TGACCCTCCAGGACGG
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	62	77	-	-4.38462	2.54e-05	0.317	TGACCCTCCAGGACGG
Klf1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	77	87	+	12.7727	2.54e-05	0.0428	TGCCCCACCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	1	11	-	12.7727	2.54e-05	0.0428	TGCCCCACCCC
Klf1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	28	38	-	12.7727	2.54e-05	0.0428	TGCCCCACCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	56	66	-	12.7727	2.54e-05	0.0428	TGCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	68	78	-	12.7727	2.54e-05	0.0428	ACCCCCACCCT
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	58	69	+	11.4426	2.54e-05	0.0811	CACCCGGAAGGC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	58	69	+	11.4426	2.54e-05	0.0811	CACCCGGAAGGC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	58	69	+	11.4426	2.54e-05	0.0811	CACCCGGAAGGC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	58	69	+	11.4426	2.54e-05	0.0811	CACCCGGAAGGC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	58	69	+	11.4426	2.54e-05	0.0811	CACCCGGAAGGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	9	19	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	9	19	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	9	19	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	10	20	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	24	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	19	29	+	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	19	29	+	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	19	29	+	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	34	44	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	34	44	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	95	105	+	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	10	20	-	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	10	20	-	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	42	52	-	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	42	52	-	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	42	52	-	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	86	96	-	12.3448	2.54e-05	0.0129	AACCCCCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	95	105	-	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	104	114	-	12.3448	2.54e-05	0.0129	ACCCCGCCTCC
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	60	-	10.803	2.54e-05	0.252	CGGAGCAAAGGTCG
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	60	-	10.803	2.54e-05	0.252	CGGAGCAAAGGTCG
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	60	-	10.803	2.54e-05	0.252	CGGAGCAAAGGTCG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	60	-	10.803	2.54e-05	0.252	CGGAGCAAAGGTCG
CEBPG	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	-	11.8571	2.54e-05	0.597	GTTGCACAAT
JUND	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	61	71	+	12.9787	2.54e-05	0.169	TGTGACTCAGG
JUND	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	64	74	-	12.9787	2.54e-05	0.169	TGTGACTCAGG
JUND	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	64	74	-	12.9787	2.54e-05	0.169	TGTGACTCAGG
JUND	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	88	98	+	12.9787	2.54e-05	0.169	TGTGACTCAGG
JUND	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	83	93	-	12.9787	2.54e-05	0.169	TGTGACTCAGG
HEY1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	-	12.9455	2.54e-05	0.0969	CGCACGCGCC
HEY1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	+	12.9455	2.54e-05	0.0969	CGCACGCGCC
Rarb(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	38	54	-	1.63636	2.54e-05	0.785	AGGTCAAAGGAAGGGGA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	12.8793	2.54e-05	0.076	ACCGGAAACC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	12.8793	2.54e-05	0.076	ACCGGAAACC
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	16	26	+	12.9423	2.54e-05	0.273	GCGATGACTCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	3	19	-	11.8061	2.54e-05	0.338	GGGGCATGGTCGGGGCA
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	+	12.459	2.54e-05	0.064	AGCCCCGTGGGCC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	-	12.459	2.54e-05	0.064	TGCCCTTTAGGCT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	-	12.459	2.54e-05	0.064	AGCCCCGTGGGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	12	28	+	7.25455	2.54e-05	0.0183	CCGGCCACACCCTCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	12	28	+	7.25455	2.54e-05	0.0183	CCGGCCACACCCTCTTC
SP4	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	15	31	-	7.25455	2.54e-05	0.0183	GTGGCACCGCCCACGCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	29	45	-	7.25455	2.54e-05	0.0183	CCAGCACCGCCCCCATG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	29	45	-	7.25455	2.54e-05	0.0183	CCAGCACCGCCCCCATG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	40	56	-	7.25455	2.54e-05	0.0183	GCCGCTCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	40	56	-	7.25455	2.54e-05	0.0183	GCCGCTCCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	40	56	-	7.25455	2.54e-05	0.0183	GCCGCTCCGCCCCCGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	40	56	-	7.25455	2.54e-05	0.0183	GCCGCTCCGCCCCCGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	71	87	+	7.25455	2.54e-05	0.0183	TCGGCTCCTCCCACTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	71	87	+	7.25455	2.54e-05	0.0183	TCGGCTCCTCCCACTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	71	87	+	7.25455	2.54e-05	0.0183	TCGGCTCCTCCCACTCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	71	87	+	7.25455	2.54e-05	0.0183	TCGGCTCCTCCCACTCC
EGR4	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	4	19	-	12.0182	2.54e-05	0.0374	AACCGCCCGCGCCTGC
EGR4	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	96	111	+	12.0182	2.54e-05	0.0374	AACCGCCCGCGCCTGC
EGR4	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	90	105	-	12.0182	2.54e-05	0.0374	CTCCCCCCTCGCCATT
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	77	90	+	9.69737	2.54e-05	0.56	TGTACAGCTGTCGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	+	12.3448	2.54e-05	0.0554	AGCCGCCGGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	-	12.3448	2.54e-05	0.0554	AGCCGCCGGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	-	12.3448	2.54e-05	0.0554	AGCCGCCGGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	-	12.3448	2.54e-05	0.0554	AGCCGCCGGGGGA
ELK4	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	5	15	+	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	48	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	48	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	48	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	48	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	48	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
ELK4	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	110	-	12.9273	2.54e-05	0.0441	TCCCTTCCGGC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	38	50	+	5.89796	2.54e-05	0.233	AGGGGGACGCCCT
Myb	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	23	32	+	13.4098	2.54e-05	0.89	GCAACTGCCT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	31	41	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	31	41	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	31	41	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	76	86	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	76	86	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	76	86	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	76	86	+	12.5345	2.54e-05	0.215	GGTTGTGGTTG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	6	19	+	13.0769	2.54e-05	0.178	CAGGGCTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	6	19	+	13.0769	2.54e-05	0.178	CAGGGCTGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	27	40	+	13.0769	2.54e-05	0.178	GAACTGTGAGTCAT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	94	105	+	12.4677	2.54e-05	0.281	ATGACCACCGAG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	94	105	+	12.4677	2.54e-05	0.281	ATGACCACCGAG
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	94	105	+	12.4677	2.54e-05	0.281	ATGACCACCGAG
Atoh1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	13.0323	2.54e-05	1	AGCATATGGC
Atoh1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	13.0323	2.54e-05	1	AGCATATGGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	30	44	+	12.3621	2.54e-05	0.00788	GGTCCGCCCCGCGGG
SP2	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	40	54	+	12.3621	2.54e-05	0.00788	CTCCCTCCCCGCCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	53	67	+	12.3621	2.54e-05	0.00788	CTCCCTCCTCCTCTT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	61	75	+	12.3621	2.54e-05	0.00788	CTCCCTCCTCCTCTT
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	79	93	+	12.3621	2.54e-05	0.00788	TCTCCGCCCCGCCTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	11	25	-	12.3621	2.54e-05	0.00788	GCCCTGCCCCGCCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	40	54	-	12.3621	2.54e-05	0.00788	CTCCCTCCTCCTCTT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	48	62	-	12.3621	2.54e-05	0.00788	CTCCCTCCTCCTCTT
SP2	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	61	75	-	12.3621	2.54e-05	0.00788	CTCCCTCCCCGCCCT
Hnf4a	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.1.0	9	24	+	6.6	2.54e-05	0.312	AAGGCCAAAGTGTATT
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	-	13.2909	2.55e-05	0.154	GCTGACTCATA
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	-	13.2909	2.55e-05	0.154	GCTGACTCATA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	+	12.9091	2.55e-05	0.063	AGCCTCAGGGG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	+	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	-	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	-	12.9091	2.55e-05	0.063	CGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	-	12.9091	2.55e-05	0.063	AGCCCGCGGCT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	64	75	+	12.6545	2.55e-05	0.0548	TGCCCCCAGCCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	17	30	+	8.53061	2.55e-05	0.062	GGGGGGTAACGGGG
NR2C2	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	6	20	+	11.5286	2.55e-05	0.099	GGCGGTGAAAGGTTA
NR2C2	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	95	109	-	11.5286	2.55e-05	0.099	GGCGGTGAAAGGTTA
EBF1	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	48	61	-	11.5082	2.55e-05	0.365	CCTCCCAGGAGACT
Klf4	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	4	13	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	10	19	-	12.5204	2.55e-05	0.0141	AGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	20	29	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	20	29	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	11	20	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	11	20	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	25	34	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	25	34	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	35	44	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	35	44	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	37	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	37	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	43	52	+	12.5204	2.55e-05	0.0141	AGGGTGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	51	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	51	60	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	51	60	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	56	65	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	59	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	63	72	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	63	72	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	64	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	64	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	56	65	-	12.5204	2.55e-05	0.0141	AGGGTGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	78	87	+	12.5204	2.55e-05	0.0141	TGGGCGGAGC
Klf4	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	96	105	+	12.5204	2.55e-05	0.0141	AGGGTGGGGA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	99	108	-	12.5204	2.55e-05	0.0141	AGGGTGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	111	-	12.5204	2.55e-05	0.0141	TGGGCGGAGC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	10	24	-	9.36207	2.55e-05	0.0307	CTCCGCCTCCGCTGG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	26	36	+	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	26	36	+	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	26	36	+	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	31	41	+	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	36	46	+	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	36	46	+	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	53	63	+	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	55	65	+	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	52	62	-	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	52	62	-	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	52	62	-	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	52	62	-	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
SP1	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	69	79	-	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	79	89	+	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	74	84	-	12.8077	2.55e-05	0.00879	TCTCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	79	89	-	12.8077	2.55e-05	0.00879	GCCCCTCCCTG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	37	56	-	6.82569	2.55e-05	0.0468	CACCTCCCCGCCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	37	56	-	6.82569	2.55e-05	0.0468	CACCTCCCCGCCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	37	56	-	6.82569	2.55e-05	0.0468	CACCTCCCCGCCCCCACCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	37	56	-	6.82569	2.55e-05	0.0468	CACCTCCCCGCCCCCACCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	37	56	-	6.82569	2.55e-05	0.0468	CACCTCCCCGCCCCCACCCC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.617	2.55e-05	0.0896	TCCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.617	2.55e-05	0.0896	TCCGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.617	2.55e-05	0.0896	TCCGGAAGTA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.617	2.55e-05	0.0896	TCCGGAAGTA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	29	46	+	-9.92105	2.55e-05	0.0324	GACAGTGGGGAAGGAGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	40	57	+	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	40	57	+	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	40	57	+	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	40	57	+	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	70	87	+	-9.92105	2.55e-05	0.0324	GACAGTGGGGAAGGAGTG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	28	45	-	-9.92105	2.55e-05	0.0324	GACAGTGGGGAAGGAGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	68	85	-	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	68	85	-	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	68	85	-	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	68	85	-	-9.92105	2.55e-05	0.0324	GGAGGGAAGAGCGGAAAA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	69	86	-	-9.92105	2.55e-05	0.0324	GACAGTGGGGAAGGAGTG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	1	15	+	12.1455	2.55e-05	0.0974	CCGCCCCCGCTGCGT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	1	15	+	12.1455	2.55e-05	0.0974	CCGCCCCCGCTGCGT
ZIC4	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	18	32	-	12.1455	2.55e-05	0.0974	CGCCCCCAGCGGCGC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	39	53	+	12.1455	2.55e-05	0.0974	AACGCCCCGCCGGGC
ZIC4	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	62	76	-	12.1455	2.55e-05	0.0974	AACGCCCCGCCGGGC
ZIC4	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	83	97	+	12.1455	2.55e-05	0.0974	CGCCCCCAGCGGCGC
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	12	+	13.4082	2.55e-05	0.151	CGCAGCTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	12	+	13.4082	2.55e-05	0.151	CGCAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	12	+	13.4082	2.55e-05	0.151	CGCAGCTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	48	58	-	13.4082	2.55e-05	0.151	CGCAGCTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	48	58	-	13.4082	2.55e-05	0.151	CGCAGCTGCAG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	-	12.8727	2.55e-05	0.0483	AGCCTCGGGCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	3	17	-	10.8197	2.55e-05	0.0427	TGTCACGCCCTTCGA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	68	82	-	10.8197	2.55e-05	0.0427	AGCCACGCCTTCCCC
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	12.6346	2.55e-05	1	AGCATATGTC
Spz1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	93	103	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	93	103	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	99	109	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	99	109	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
Spz1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	99	109	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	99	109	+	12.6455	2.55e-05	0.595	GCGGTAGCAGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	-	12.4426	2.55e-05	0.064	TCCCTCCCGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	-	12.4426	2.55e-05	0.064	TCCCTCCCGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	-	12.4426	2.55e-05	0.064	TCCCTCCCGGGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	44	58	+	12.2273	2.55e-05	0.0789	CGCCCGCGAGCCCCG
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	5	18	+	12.2414	2.55e-05	0.916	CGTATTCAAATGAG
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	5	18	+	12.2414	2.55e-05	0.916	CGTATTCAAATGAG
POU1F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	5	18	+	12.2414	2.55e-05	0.916	CGTATTCAAATGAG
POU1F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	5	18	+	12.2414	2.55e-05	0.916	CGTATTCAAATGAG
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	5	18	+	12.2414	2.55e-05	0.916	CGTATTCAAATGAG
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	5	19	+	12.2703	2.55e-05	0.149	GTGGGGCAGAGGCTG
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	96	110	-	12.2703	2.55e-05	0.149	GTGGGGCAGAGGCTG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	+	11.4038	2.55e-05	0.145	CTCACGTGCG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	+	11.4038	2.55e-05	0.145	CTCACGTGCG
BHLHE41	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	+	11.4038	2.55e-05	0.145	CTCACGTGCG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	+	11.4038	2.55e-05	0.145	CTCACGTGCG
BHLHE41	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	-	11.4038	2.55e-05	0.145	CTCACGTGCG
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	28	41	-	13.0909	2.56e-05	0.951	AGCCTGTTATCTCT
TFAP4	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	39	48	+	13	2.56e-05	0.655	GTCAGCTGAT
TFAP4	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	67	76	-	13	2.56e-05	0.655	GTCAGCTGAT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	72	84	-	10.8621	2.56e-05	0.126	ACGCCGGAAGTTA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	72	84	-	10.8621	2.56e-05	0.126	ACGCCGGAAGTTA
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	3	12	-	12.1129	2.56e-05	0.888	CACATTCCTG
TEAD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	3	12	-	12.1129	2.56e-05	0.888	CACATTCCTG
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	103	112	-	12.1129	2.56e-05	0.888	CACATTCCTG
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	4	23	-	6.81651	2.56e-05	0.0468	AACCAATCCCACCCCCACCC
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	56	75	-	6.81651	2.56e-05	0.0468	CCCCTCCACACACCCTTAAA
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	40	59	+	6.81651	2.56e-05	0.0468	CCCCTCCACACACCCTTAAA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	45	64	+	6.81651	2.56e-05	0.0468	CAACAACTGACCCCAAAAGC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	45	64	+	6.81651	2.56e-05	0.0468	CAACAACTGACCCCAAAAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	47	60	-	12.2115	2.56e-05	0.0138	CCTCCTCCTACTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	47	60	-	12.2115	2.56e-05	0.0138	CCTCCTCCTACTCG
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	7	27	+	11.2581	2.56e-05	0.154	CTGGGCTTTTCTTTTCTTTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	7	27	+	11.2581	2.56e-05	0.154	CTGGGCTTTTCTTTTCTTTTT
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	20	34	+	10.0658	2.56e-05	0.176	CACGTGACTCGGCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	52	66	+	10.0658	2.56e-05	0.176	CACGTGACTCGGCGG
JUN	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	43	55	+	12.7347	2.56e-05	0.301	GTGCTGAGGTCAT
JUN	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	60	72	-	12.7347	2.56e-05	0.301	GTGCTGAGGTCAT
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	40	49	+	12.2472	2.56e-05	0.93	AGTCTGGCTT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	40	49	+	12.2472	2.56e-05	0.93	AGTCTGGCTT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	46	55	+	12.2472	2.56e-05	0.93	AGTCTGGCTT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	46	55	+	12.2472	2.56e-05	0.93	AGTCTGGCTT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	46	55	+	12.2472	2.56e-05	0.93	AGTCTGGCTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	5	25	+	11.4898	2.56e-05	0.0112	GAGGCGGGGGAGGGGAGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	17	37	+	11.4898	2.56e-05	0.0112	CGAAGAGGAGGCGGGGAGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	89	109	+	11.4898	2.56e-05	0.0112	GGAGGCGGTGGCAGTGGTGGA
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	45	59	+	12.2241	2.56e-05	0.365	GGGACCAAGGCCGGC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	21	32	+	11.4098	2.56e-05	0.0813	CAACCGGAAGGG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	21	32	+	11.4098	2.56e-05	0.0813	CAACCGGAAGGG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	50	62	-	12.9592	2.56e-05	0.367	AGAGGGTCACGGG
E2F3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	88	105	+	6.90909	2.56e-05	1	GAATAGGGCGCAAGATGT
E2F3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	88	105	+	6.90909	2.56e-05	1	GAATAGGGCGCAAGATGT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	12.6538	2.56e-05	0.123	GGCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	12.6538	2.56e-05	0.123	GGCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	12.6538	2.56e-05	0.123	GGCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	12.6538	2.56e-05	0.123	GGCACGTGCC
SP8	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	30	41	-	12.3947	2.56e-05	0.0213	ACCCCGCCCGCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	31	42	-	12.3947	2.56e-05	0.0213	CCACCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	31	42	-	12.3947	2.56e-05	0.0213	CCACCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	31	42	-	12.3947	2.56e-05	0.0213	CCACCGCCCCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	61	72	-	12.3947	2.56e-05	0.0213	GCCACGTCCCCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	9	19	+	12.8525	2.56e-05	0.0432	GCGGAAGCCGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	7	17	-	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	11	21	-	12.8525	2.56e-05	0.0432	CCGGAAACGCC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	21	31	+	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	24	34	+	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	24	34	+	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	40	-	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	40	50	+	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
Gabpa	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	54	64	+	12.8525	2.56e-05	0.0432	GCGGAAGCCGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	51	61	-	12.8525	2.56e-05	0.0432	GCGGAAGCCGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	65	75	-	12.8525	2.56e-05	0.0432	CCGGAAGGGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.6545	2.56e-05	0.0875	ACCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.6545	2.56e-05	0.0875	ACCGGAAGGG
E2F8	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	41	52	-	7.5	2.56e-05	0.631	TTTCCCCCACAA
E2F8	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	41	52	-	7.5	2.56e-05	0.631	TTTCCCCCACAA
E2F8	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	41	52	-	7.5	2.56e-05	0.631	TTTCCCCCACAA
E2F8	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	64	75	+	7.5	2.56e-05	0.631	TTTCCCCCACAA
Hes2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	56	68	+	11.8095	2.56e-05	0.467	AGAAGGCACGTGG
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	74	86	-	11.8095	2.56e-05	0.467	GGCAGGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	74	86	-	11.8095	2.56e-05	0.467	GGCAGGCACGTGA
SRF	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	1	16	+	8.21311	2.56e-05	0.539	TTACCATATTTGCGCA
SRF	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	14	29	-	8.21311	2.56e-05	0.539	TTACCATATTTGCGCA
SRF	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	86	101	+	8.21311	2.56e-05	0.539	TTACCATATTTGCGCA
SRF	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	99	114	-	8.21311	2.56e-05	0.539	TTACCATATTTGCGCA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	32	45	+	12.9655	2.56e-05	0.208	CTTCCTGGAAACCT
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	58	71	+	12.9655	2.56e-05	0.208	CTTCCTGGAAACCT
USF2	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	99	109	+	13.1224	2.56e-05	0.0889	CCCAGGTGACC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	62	76	-	10.5571	2.56e-05	0.101	CCCCTCCCGCGGCTG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	62	76	-	10.5571	2.56e-05	0.101	CCCCTCCCGCGGCTG
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	62	76	-	10.5571	2.56e-05	0.101	CCCCTCCCGCGGCTG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	62	76	-	10.5571	2.56e-05	0.101	CCCCTCCCGCGGCTG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	26	45	+	6.80734	2.56e-05	0.0468	CCACCCCCCCCGCCCCCCGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	26	45	+	6.80734	2.56e-05	0.0468	CCACCCCCCCCGCCCCCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	26	45	+	6.80734	2.56e-05	0.0468	CCACCCCCCCCGCCCCCCGC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	26	45	+	6.80734	2.56e-05	0.0468	CCACCCCCCCCGCCCCCCGC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	48	62	-	11.5143	2.56e-05	0.099	CAGGGTCAGGAGGCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	103	-	6.75862	2.56e-05	0.189	AAACACGTGCCT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	103	-	6.75862	2.56e-05	0.189	AAACACGTGCCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	65	75	+	12.8545	2.57e-05	0.0483	ACCCCCAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	65	75	+	12.8545	2.57e-05	0.0483	ACCCCCAGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	65	75	+	12.8545	2.57e-05	0.0483	ACCCCCAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	65	75	+	12.8545	2.57e-05	0.0483	ACCCCCAGGCT
Ar	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	+	9.44828	2.57e-05	0.882	CGGGACAGGAAGTTCCT
Ar	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	-	9.44828	2.57e-05	0.882	CGGGACAGGAAGTTCCT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	17	34	+	11.4268	2.57e-05	0.101	AGGGTTGTCATTGGACAA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	17	34	+	11.4268	2.57e-05	0.101	AGGGTTGTCATTGGACAA
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	46	60	-	12.121	2.57e-05	1	CATTTTTATGCAGTT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	84	98	+	12.121	2.57e-05	1	CATTTTTATGCAGTT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	50	63	-	10.6393	2.57e-05	0.176	GCCCCCCCGGCACG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	50	63	-	10.6393	2.57e-05	0.176	GCCCCCCCGGCACG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	49	63	+	12.1806	2.57e-05	0.397	ATATAAAAAGAGGAG
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	49	63	+	12.1806	2.57e-05	0.397	ATATAAAAAGAGGAG
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	49	63	+	12.1806	2.57e-05	0.397	ATATAAAAAGAGGAG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	-	12.4262	2.57e-05	0.064	TCCCCCTACGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	+	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	+	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	+	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	+	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	-	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	-	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	-	12.5306	2.57e-05	0.0857	TGCCCCCGGCCG
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	47	57	+	12.9592	2.57e-05	0.762	ATTGCATAATG
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	47	57	+	12.9592	2.57e-05	0.762	ATTGCATAATG
Creb5	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	73	+	11.4909	2.57e-05	0.136	GATGACGTCAAA
Creb5	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	53	-	11.4909	2.57e-05	0.136	GATGACGTCAAA
CDX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	47	57	+	13.1864	2.57e-05	1	AGACAATAAAA
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	47	57	+	13.1864	2.57e-05	1	AGACAATAAAA
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	47	57	+	13.1864	2.57e-05	1	AGACAATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	47	57	+	13.1864	2.57e-05	1	AGACAATAAAA
CDX2	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	58	68	-	13.1864	2.57e-05	1	AGACAATAAAA
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	80	96	+	11.4605	2.57e-05	0.537	GCCCGTGCGTCCGTGGC
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	80	96	+	11.4605	2.57e-05	0.537	GCCCGTGCGTCCGTGGC
Gmeb1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	80	96	+	11.4605	2.57e-05	0.537	GCCCGTGCGTCCGTGGC
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	80	96	+	11.4605	2.57e-05	0.537	GCCCGTGCGTCCGTGGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	19	34	-	12	2.57e-05	0.0374	CCACGCCCCTGCAGGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	19	34	-	12	2.57e-05	0.0374	CCACGCCCCTGCAGGT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	50	65	+	12	2.57e-05	0.0374	TTCCTCCCCCGCCTCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	65	-	12	2.57e-05	0.0374	TTCCTCCCCCGCCTCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	65	-	12	2.57e-05	0.0374	TTCCTCCCCCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	65	-	12	2.57e-05	0.0374	TTCCTCCCCCGCCTCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	85	100	+	12	2.57e-05	0.0374	GCACGCACACCCATAA
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	68	82	+	12.3448	2.57e-05	0.00794	ACCCCACCCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	33	47	-	12.3448	2.57e-05	0.00794	ACCCCACCCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	33	47	-	12.3448	2.57e-05	0.00794	ACCCCACCCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	33	47	-	12.3448	2.57e-05	0.00794	ACCCCACCCCCGCTT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	33	47	-	12.3448	2.57e-05	0.00794	ACCCCACCCCCGCTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	49	63	-	12.3448	2.57e-05	0.00794	GCTCCTCCTCCTACT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	49	63	-	12.3448	2.57e-05	0.00794	GCTCCTCCTCCTACT
MLX	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	12.3714	2.57e-05	0.205	ACCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	12.3714	2.57e-05	0.205	ACCACGTGAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	13	23	+	13.4545	2.57e-05	0.146	GCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	13	23	+	13.4545	2.57e-05	0.146	GCATGAGTCAT
FOSL2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	19	29	-	13.4545	2.57e-05	0.146	CAGTGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	21	31	-	13.4545	2.57e-05	0.146	GCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	21	31	-	13.4545	2.57e-05	0.146	GCATGAGTCAT
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	31	41	-	13.4545	2.57e-05	0.146	CAGTGAGTCAT
SP4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	15	31	+	7.21818	2.57e-05	0.0184	CCGCCCCCGCCCCCGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	57	73	-	7.21818	2.57e-05	0.0184	CCGCCCCCGCCCCCGCC
SP4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	84	100	-	7.21818	2.57e-05	0.0184	CCGCCCCCGCCCCCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	15	24	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	18	27	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	15	24	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	26	35	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	26	35	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	18	27	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	35	44	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	26	35	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	26	35	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	44	53	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	35	44	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	47	56	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	52	61	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	52	61	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	44	53	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	54	63	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	54	63	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	54	63	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	47	56	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	52	61	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	52	61	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	62	71	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	62	71	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	62	71	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	62	71	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	62	71	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	54	63	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	54	63	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	54	63	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	70	79	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	71	80	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	71	80	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	62	71	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	62	71	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	62	71	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	62	71	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	62	71	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	70	79	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	71	80	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	71	80	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	88	97	+	10.2339	2.57e-05	0.043	AGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	91	100	+	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	88	97	-	10.2339	2.57e-05	0.043	CGCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	91	100	-	10.2339	2.57e-05	0.043	AGCGCGCGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	-	12.6364	2.57e-05	0.0893	GCCCCCCGGGCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	-	12.6364	2.57e-05	0.0893	AGCCCAGAGGCA
KLF13	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	28	45	-	7.84483	2.57e-05	0.182	GAAACACGCCCCCGCCCC
KLF13	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	54	71	+	7.84483	2.57e-05	0.182	GAAACACGCCCCCGCCCC
INSM1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	63	74	-	12.3878	2.57e-05	0.146	GGTTTGGGGGTG
INSM1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	92	103	+	12.3878	2.57e-05	0.146	TGGCAGGGGCAG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	11	24	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	11	24	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	11	24	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	11	24	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	11	24	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	52	65	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	52	65	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	52	65	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	52	65	+	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	91	104	-	12.7576	2.57e-05	0.0378	GCTCGCCAGGCCTG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	14	27	-	13.0577	2.57e-05	0.178	GGCCGGTGACTCAG
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	106	+	12.4592	2.57e-05	0.285	CGCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	19	-	12.4592	2.57e-05	0.285	CGCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	19	-	12.4592	2.57e-05	0.285	CGCCACGTGGC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	20	30	-	11.5345	2.57e-05	0.0668	GCACCCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	20	30	-	11.5345	2.57e-05	0.0668	GCACCCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	20	30	-	11.5345	2.57e-05	0.0668	GCACCCACGCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	52	62	+	11.5345	2.57e-05	0.0668	GCACCCACGCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	6	21	+	5.31034	2.57e-05	0.298	GTCCCTCAATGCCACT
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	6	21	+	5.31034	2.57e-05	0.298	GTCCCTCAATGCCACT
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	54	67	-	8.37755	2.57e-05	0.365	TGGCCCCTCCCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	54	67	-	8.37755	2.57e-05	0.365	TGGCCCCTCCCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	54	67	-	8.37755	2.57e-05	0.365	TGGCCCCTCCCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	54	67	-	8.37755	2.57e-05	0.365	TGGCCCCTCCCCAA
NFIC::TLX1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	48	61	+	8.37755	2.57e-05	0.365	TGGCCCCTCCCCAA
ELF4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	32	43	-	11.3934	2.57e-05	0.0814	GACCCGGAAGAG
ZBTB7C	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	40	51	+	12.4516	2.57e-05	0.281	GCGCCCCCCGGC
ZBTB7C	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	64	75	-	12.4516	2.57e-05	0.281	GCGCCCCCCGGC
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	58	+	12.4909	2.57e-05	0.244	CTTCCTGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	58	+	12.4909	2.57e-05	0.244	CTTCCTGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	58	+	12.4909	2.57e-05	0.244	CTTCCTGGAAG
STAT1	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	57	67	-	12.4909	2.57e-05	0.244	CTTCCTGGAAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	26	40	-	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	26	40	-	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	93	107	-	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	8	22	+	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	8	22	+	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
ZBTB33	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	75	89	+	12.2121	2.58e-05	0.0789	TCCCCGCGCGACCCC
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	47	67	+	11.2419	2.58e-05	0.154	GTTTGCTTCCGGTTTTTTCCT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	47	67	+	11.2419	2.58e-05	0.154	GTTTGCTTCCGGTTTTTTCCT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	47	67	+	11.2419	2.58e-05	0.154	GTTTGCTTCCGGTTTTTTCCT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	47	67	+	11.2419	2.58e-05	0.154	GTTTGCTTCCGGTTTTTTCCT
IRF1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	48	68	-	11.2419	2.58e-05	0.154	GTTTGCTTCCGGTTTTTTCCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	18	29	+	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	40	51	+	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	50	61	+	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	50	61	+	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	64	75	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	69	80	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	69	80	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	69	80	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	102	113	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	102	113	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	102	113	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	102	113	-	12.6364	2.58e-05	0.0548	CGCCCCCGGCCC
EBF1	WILDTYPE__mrna.noflip.NA__chr4:95263952..95264066,-__1087.1.0.0	100	113	+	11.4754	2.58e-05	0.365	ACTCCCGAGAGACA
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.6923	2.58e-05	0.0872	CCCGGAAGTG
SREBF2	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	7	16	-	13.0337	2.58e-05	0.871	CTGGTGTGAC
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	28	37	-	13.0337	2.58e-05	0.871	CTGGTGTGAC
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	28	37	-	13.0337	2.58e-05	0.871	CTGGTGTGAC
SREBF2	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	78	87	+	13.0337	2.58e-05	0.871	CTGGTGTGAC
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	99	108	+	13.0337	2.58e-05	0.871	CTGGTGTGAC
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	99	108	+	13.0337	2.58e-05	0.871	CTGGTGTGAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	9	18	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	9	18	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	30	39	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	52	61	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	56	65	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	72	81	+	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	3	12	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	3	12	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	34	43	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	50	59	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	61	70	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	61	70	-	12.4128	2.58e-05	0.0443	CCTCCCCCAC
CENPB	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	7	21	+	12.2308	2.58e-05	0.793	CCCGCGTCAGAAGTA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	15	28	+	10.7727	2.58e-05	0.252	GAGGTCAGAGGGCC
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	15	28	+	10.7727	2.58e-05	0.252	GAGGTCAGAGGGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	33	44	-	12.3816	2.58e-05	0.0214	ACCACGCGCCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	33	44	-	12.3816	2.58e-05	0.0214	ACCACGCGCCCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	42	61	+	6.78899	2.58e-05	0.0468	CCACAGGCCACCCGCCCACT
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	35	49	+	10.5429	2.58e-05	0.101	CCCGCCCCGCCGCGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	35	49	+	10.5429	2.58e-05	0.101	CCCGCCCCGCCGCGG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	35	49	+	10.5429	2.58e-05	0.101	CCCGCCCCGCCGCGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	35	49	+	10.5429	2.58e-05	0.101	CCCGCCCCGCCGCGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	35	49	+	10.5429	2.58e-05	0.101	CCCGCCCCGCCGCGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	68	85	+	-9.96053	2.58e-05	0.0325	TAAGGGGAGGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	30	47	-	-9.96053	2.58e-05	0.0325	TAAGGGGAGGGAGGAGGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	89	106	-	-9.96053	2.58e-05	0.0325	GGTGGGGAGGAAGCTGGA
MAFF	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	2	19	-	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	58	75	+	12.5333	2.58e-05	0.965	GAGGTATCAGCACTTTTC
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
MAFF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	96	113	+	12.5333	2.58e-05	0.965	TAATAATCAGCAAAATAT
ATF7	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	47	60	+	10.0571	2.58e-05	0.131	ACATTACGTAATTC
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	19	-	6.43636	2.58e-05	0.14	TAATGGCGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	19	-	6.43636	2.58e-05	0.14	TAATGGCGGAAGTG
SPI1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	96	109	+	6.43636	2.58e-05	0.14	TAATGGCGGAAGTG
Hmx1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	53	69	+	12.4756	2.58e-05	1	TCTGGCAATTAAAGACC
JUND	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	-	12.9149	2.58e-05	0.169	GCTGACTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	-	12.9149	2.58e-05	0.169	GCTGACTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	-	12.9149	2.58e-05	0.169	GCTGACTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	-	12.9149	2.58e-05	0.169	GCTGACTCACC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	20	33	+	8.5	2.58e-05	0.0626	GGGGGCAACAGTGG
RARA(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	19	35	-	6.32787	2.58e-05	0.563	AGGTCATTTCAGGCTCT
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	80	96	+	6.32787	2.58e-05	0.563	AGGTCATTTCAGGCTCT
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	80	96	+	6.32787	2.58e-05	0.563	AGGTCATTTCAGGCTCT
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	80	96	+	6.32787	2.58e-05	0.563	AGGTCATTTCAGGCTCT
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	80	96	+	6.32787	2.58e-05	0.563	AGGTCATTTCAGGCTCT
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	30	44	+	13	2.58e-05	0.736	CAGATGTTGACTCAG
Hoxd8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	3	19	+	12.2738	2.58e-05	1	TGAATAATTAATGTACC
Hoxd8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	3	19	+	12.2738	2.58e-05	1	TGAATAATTAATGTACC
Sox3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	97	106	-	13.1034	2.58e-05	0.659	CTTTTGTCCT
Sox3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	97	106	-	13.1034	2.58e-05	0.659	CTTTTGTCCT
POU1F1	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	12	25	+	12.2241	2.58e-05	0.916	TATAGGCTAATGAG
RELA	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	3	12	-	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	21	30	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	21	30	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	21	30	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	21	30	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	37	46	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	37	46	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	41	50	+	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	65	74	-	12.8163	2.58e-05	0.189	GGGGCTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	65	74	-	12.8163	2.58e-05	0.189	GGGGCTTCCC
CREB3L1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	10	23	+	10.9394	2.58e-05	0.253	CAGCCACGTGACCC
CREB3L1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	16	29	-	10.9394	2.58e-05	0.253	GCGCCACGTCTGAG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	86	99	+	10.9394	2.58e-05	0.253	GCGCCACGTCTGAG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	86	99	+	10.9394	2.58e-05	0.253	GCGCCACGTCTGAG
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	86	99	+	10.9394	2.58e-05	0.253	GCGCCACGTCTGAG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	86	99	+	10.9394	2.58e-05	0.253	GCGCCACGTCTGAG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	101	114	+	10.9394	2.58e-05	0.253	GCGCCACGTCCCTT
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	101	114	+	10.9394	2.58e-05	0.253	GCGCCACGTCCCTT
TFEC	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	12.6585	2.58e-05	0.129	ACCACGTGAG
NR2C2	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	84	98	+	11.5	2.59e-05	0.099	TTGGGGCAGGGGCCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	96	110	+	11.5	2.59e-05	0.099	AGGGAGCAGAGGTGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	96	110	+	11.5	2.59e-05	0.099	AGGGAGCAGAGGTGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	96	110	+	11.5	2.59e-05	0.099	AGGGAGCAGAGGTGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	96	110	+	11.5	2.59e-05	0.099	AGGGAGCAGAGGTGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	96	110	+	11.5	2.59e-05	0.099	AGGGAGCAGAGGTGG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	23	+	10.623	2.59e-05	0.176	CCCCCCCCACCGTG
GLIS2	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	11	24	+	10.623	2.59e-05	0.176	GGCCCCCAGCAGGC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	13	29	-	-1.57303	2.59e-05	0.826	GGGGTTCAAAGCTCAGT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	4	17	+	11.1897	2.59e-05	0.0244	GGCCTCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	61	74	-	11.1897	2.59e-05	0.0244	GGCCTCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	61	74	-	11.1897	2.59e-05	0.0244	GGCCTCGCCCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	35	+	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	35	+	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	76	+	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	76	+	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	81	+	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	81	+	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	83	+	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	94	+	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	94	+	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	11	21	-	12.4065	2.59e-05	0.0148	CCCCCACCCAT
SP3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	21	31	-	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	21	31	-	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	25	35	-	12.4065	2.59e-05	0.0148	ACCCCGCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	29	39	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	32	42	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	32	42	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	32	42	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	34	44	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	34	44	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	34	44	-	12.4065	2.59e-05	0.0148	GCACCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	39	49	-	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	71	81	-	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	71	81	-	12.4065	2.59e-05	0.0148	ACCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	6	16	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	11	21	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	12	22	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	23	33	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	26	36	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	29	39	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	29	39	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	32	42	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	34	44	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	34	44	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	26	36	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	37	47	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	37	47	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	37	47	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	29	39	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	29	39	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	29	39	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	40	50	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	40	50	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	31	41	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	32	42	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	32	42	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	32	42	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	32	42	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	32	42	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	32	42	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	32	42	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	32	42	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	34	44	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	34	44	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	34	44	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	34	44	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	34	44	-	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	35	45	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	37	47	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	37	47	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	38	48	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	52	62	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	55	65	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	58	68	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	64	74	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	64	74	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	67	77	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	67	77	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	67	77	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	67	77	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	67	77	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	68	78	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	68	78	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	70	80	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	70	80	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	70	80	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	70	80	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	70	80	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	71	81	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	81	+	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	81	+	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	73	83	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	83	+	12.7885	2.59e-05	0.00879	GCACCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	65	75	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	76	86	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	68	78	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	68	78	-	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	79	89	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	85	95	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	85	95	+	12.7885	2.59e-05	0.00879	CCTCCTCCTCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	10	20	+	12.8163	2.59e-05	0.116	CTCACATGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	10	20	+	12.8163	2.59e-05	0.116	CTCACATGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	10	20	+	12.8163	2.59e-05	0.116	CTCACATGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	10	20	+	12.8163	2.59e-05	0.116	CTCACATGACC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	33	43	+	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	33	43	+	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	61	71	+	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	61	71	+	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	14	24	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	21	31	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	21	31	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	21	31	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	21	31	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	21	31	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	23	33	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	23	33	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	23	33	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	23	33	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	52	62	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	52	62	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	52	62	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	52	62	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	62	72	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	63	73	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	63	73	-	12.697	2.59e-05	0.0428	CGCCCCACCCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	11	30	+	6.77982	2.59e-05	0.0468	CCCCCCGCCCCCCACCTCGC
Nkx2-5(var.2)	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	69	79	-	12.9818	2.59e-05	0.721	GGGCTCTCAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	18	38	-	11.4694	2.59e-05	0.0113	CGAGCCGGGCCGGGAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	18	38	-	11.4694	2.59e-05	0.0113	CGAGCCGGGCCGGGAGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	37	57	-	11.4694	2.59e-05	0.0113	AGTGGAGAAGCGAGGAGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	37	57	-	11.4694	2.59e-05	0.0113	AGTGGAGAAGCGAGGAGTGGG
Klf12	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	52	66	+	10.7869	2.59e-05	0.0431	GGACACACCCACCCG
Klf12	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	49	63	-	10.7869	2.59e-05	0.0431	GGACACACCCACCCG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	6	15	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	6	15	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	5	14	-	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	5	14	-	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	49	58	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	40	49	-	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	49	58	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	43	52	-	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	63	72	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	57	66	-	12.4592	2.59e-05	0.0141	GGGGCGTGGG
Klf4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	101	110	+	12.4592	2.59e-05	0.0141	GGGGCGTGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	74	91	+	-9.97368	2.59e-05	0.0325	GGAGGGGCGGAGGGCGGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	96	113	+	-9.97368	2.59e-05	0.0325	GGAAGTAGGAGAGGAGTT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	24	41	-	-9.97368	2.59e-05	0.0325	GGAGGGGCGGAGGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	24	41	-	-9.97368	2.59e-05	0.0325	GGAGGGGCGGAGGGCGGG
ESRRB	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	1	11	-	11.0517	2.59e-05	0.878	AGAAGGTCATC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	60	73	-	9.14894	2.59e-05	0.0959	GCACCCCTGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	60	73	-	9.14894	2.59e-05	0.0959	GCACCCCTGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	60	73	-	9.14894	2.59e-05	0.0959	GCACCCCTGCTGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	60	73	-	9.14894	2.59e-05	0.0959	GCACCCCTGCTGCC
ZIC1	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	23	36	+	9.14894	2.59e-05	0.0959	CCCCTCCTGCCGCG
NR3C1	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	-	8.42857	2.59e-05	0.991	GTGAACATCATGTACAG
NR3C1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	+	8.42857	2.59e-05	0.991	AAGAACATTGTCTCCCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	13.2692	2.59e-05	0.221	GGCACGTGCG
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	13.2692	2.59e-05	0.221	GGCACGTGCG
BHLHE40	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	13.2692	2.59e-05	0.221	ATCACGTGAG
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	13.2692	2.59e-05	0.221	AACACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	13.2692	2.59e-05	0.221	AACACGTGCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	13.2692	2.59e-05	0.221	GGCACGTGCG
BHLHE40	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	13.2692	2.59e-05	0.221	ATCACGTGAG
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	13.2692	2.59e-05	0.221	GGCACGTGCG
RXRB	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	38	-	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
RXRB	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	77	90	+	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
RXRB	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	77	90	+	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
RXRB	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	77	90	+	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
RXRB	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	77	90	+	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
RXRB	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	77	90	+	4.34545	2.59e-05	0.388	AGGGTCACAGGCCA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.1455	2.59e-05	0.0777	ACCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.1455	2.59e-05	0.0777	ACCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	12.1455	2.59e-05	0.0777	GCCGGATGTT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	12.1455	2.59e-05	0.0777	GCCGGATGTT
SP2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	2	16	+	12.3276	2.59e-05	0.00799	CTCCTGCCCCCTCTC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	50	64	+	12.3276	2.59e-05	0.00799	GTCCCACCCCTTGAA
SP2	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	51	65	+	12.3276	2.59e-05	0.00799	TCCCCACCCATCCCG
SP2	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	17	31	-	12.3276	2.59e-05	0.00799	TCTCCTCCCTCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	24	38	-	12.3276	2.59e-05	0.00799	GCACCGCCCTTCCGG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	24	38	-	12.3276	2.59e-05	0.00799	GCACCGCCCTTCCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	99	113	-	12.3276	2.59e-05	0.00799	CTCCTGCCCCCTCTC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	99	113	-	12.3276	2.59e-05	0.00799	CTCCTGCCCCCTCTC
JDP2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	19	27	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	31	39	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	32	40	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	40	48	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	82	90	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	82	90	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	82	90	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	82	90	-	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	10	+	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	30	38	+	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	30	38	+	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	32	40	+	11.8793	2.59e-05	0.225	GTGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	67	75	+	11.8793	2.59e-05	0.225	GTGAGTCAT
Foxj3	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	53	69	-	12.7143	2.59e-05	1	TCTCTGTAAACAAACCG
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	12.9808	2.59e-05	0.293	CCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	12.9808	2.59e-05	0.293	CCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	12.9808	2.59e-05	0.293	CCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	12.9808	2.59e-05	0.293	CCCACGTGAC
MAX	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	12.9808	2.59e-05	0.293	CCCACGTGAC
NRF1	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	52	62	+	12.2	2.59e-05	0.0124	GAGCCCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	53	63	-	12.2	2.59e-05	0.0124	GAGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:179125324..179125438,+__1644.1.1.0	69	79	-	12.2	2.59e-05	0.0124	GAGCCCGCGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	-	12.3443	2.59e-05	0.0554	TCCCCCGGCGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	+	12.3443	2.59e-05	0.0554	TCCCCCGGCGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	+	12.3443	2.59e-05	0.0554	TCCCCCGGCGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	+	12.3443	2.59e-05	0.0554	TCCCCCGGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	101	+	12.4098	2.6e-05	0.064	TGCCGGCGGGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	101	+	12.4098	2.6e-05	0.064	TGCCGGCGGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	+	12.4098	2.6e-05	0.064	CGCCCTTGGGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	+	12.4098	2.6e-05	0.064	CGCCCTTGGGGGC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	46	60	-	11.7121	2.6e-05	0.265	CCTCTTTCAATTTCT
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	80	94	-	11.7121	2.6e-05	0.265	CCTCTTTCAATTTCT
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	29	43	+	9.31034	2.6e-05	0.0311	AGGCGCCCACGCCCA
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	72	86	-	9.31034	2.6e-05	0.0311	AGGCGCCCACGCCCA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	17	30	+	12.9483	2.6e-05	0.208	TTTATGGGAACTGG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	17	30	+	12.9483	2.6e-05	0.208	TTTATGGGAACTGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	21	+	11.9818	2.6e-05	0.0374	CCCCCCCCCCCCACAG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	11	26	+	11.9818	2.6e-05	0.0374	CCCCGCCCCCCCTCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	8	23	-	11.9818	2.6e-05	0.0374	CCACGCCCACACGTCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	8	23	-	11.9818	2.6e-05	0.0374	CCACGCCCACACGTCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	8	23	-	11.9818	2.6e-05	0.0374	CCACGCCCACACGTCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	10	25	-	11.9818	2.6e-05	0.0374	CCAGGCCCACCCCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	10	25	-	11.9818	2.6e-05	0.0374	CCAGGCCCACCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	10	25	-	11.9818	2.6e-05	0.0374	CCAGGCCCACCCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	10	25	-	11.9818	2.6e-05	0.0374	CCAGGCCCACCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	36	51	+	11.9818	2.6e-05	0.0374	GCCCGCCCCCACGTTT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	30	45	-	11.9818	2.6e-05	0.0374	CCCCGCCCCCCCTCGC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	64	77	+	2.12727	2.6e-05	0.57	CGGAAACCGGAAGC
ETV4	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	12.6207	2.6e-05	0.0999	AACGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	12.6207	2.6e-05	0.0999	AACGGAAGTA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	12.6207	2.6e-05	0.0999	AACGGAAGTA
TP63	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	36	53	+	2.5	2.6e-05	0.575	AACAAGCCCAGGCAAGCC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	99	+	13.3673	2.6e-05	0.151	AGCAGCTGGGA
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	112	+	13.3673	2.6e-05	0.151	AGCAGCTGGGA
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	112	+	13.3673	2.6e-05	0.151	AGCAGCTGGGA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	108	+	13.4082	2.6e-05	0.121	AACAGCTGTGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	108	+	13.4082	2.6e-05	0.121	AACAGCTGTGG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	13.1148	2.6e-05	0.333	GCCACGTGCC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	13.1148	2.6e-05	0.333	GCCACGTGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	30	46	-	7.18182	2.6e-05	0.0186	GAAGTCCCGCCTCCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	30	46	-	7.18182	2.6e-05	0.0186	GAAGTCCCGCCTCCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	30	46	-	7.18182	2.6e-05	0.0186	GAAGTCCCGCCTCCTTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	4	14	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	4	14	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	28	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	28	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	28	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	28	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	28	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	28	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	19	29	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	32	+	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	32	+	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	35	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	27	37	+	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	40	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	41	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	41	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	35	45	+	12.3103	2.6e-05	0.0129	AGCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	45	55	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	45	55	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	55	65	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	61	71	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	61	71	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	73	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	73	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	69	79	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	70	80	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	83	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	73	83	+	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	76	86	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	104	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	105	+	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	109	+	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	2	12	-	12.3103	2.6e-05	0.0129	GCAACACCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	6	16	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	10	20	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	10	20	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	10	20	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	10	20	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	11	21	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	11	21	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	11	21	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	11	21	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	12	22	-	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	12	22	-	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	15	25	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	15	25	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	15	25	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	15	25	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	15	25	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	16	26	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	16	26	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	16	26	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	20	30	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	20	30	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	20	30	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	20	30	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	29	39	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	31	41	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	32	42	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	32	42	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	32	42	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	32	42	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	32	42	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	32	42	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	32	42	-	12.3103	2.6e-05	0.0129	CACCCCCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	35	45	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	49	59	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	49	59	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	50	60	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	50	60	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	50	60	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	52	62	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	52	62	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	52	62	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	52	62	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	60	70	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	60	70	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	65	75	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	65	75	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	84	-	12.3103	2.6e-05	0.0129	CCCCCGCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	75	85	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	80	90	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	85	95	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	86	96	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	87	97	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
KLF16	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	101	111	-	12.3103	2.6e-05	0.0129	GCCCCGCCCCA
TBX2	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	61	71	-	12.3091	2.6e-05	1	TGGGTGTGAAG
ZIC4	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	29	43	-	12.1091	2.6e-05	0.0975	GGAGCCCCGCAGTGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	72	86	+	12.1091	2.6e-05	0.0975	GGAGCCCCGCAGTGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	72	86	+	12.1091	2.6e-05	0.0975	GGAGCCCCGCAGTGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	72	86	+	12.1091	2.6e-05	0.0975	GGAGCCCCGCAGTGC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	34	-	12.8364	2.6e-05	0.0485	CCCCCCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	34	-	12.8364	2.6e-05	0.0485	CCCCCCAGGCC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	44	54	+	12.8364	2.6e-05	0.0485	CCCCCCAGGCC
E2F8	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	24	35	+	7.47561	2.6e-05	0.631	TTTCCCCTCAAC
E2F8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	61	72	+	7.47561	2.6e-05	0.631	TTTCCCCTCAAC
E2F8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	61	72	+	7.47561	2.6e-05	0.631	TTTCCCCTCAAC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	11.8364	2.6e-05	0.2	GTCACGTGTC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	11.8364	2.6e-05	0.2	GTCACGTGTC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	11.8364	2.6e-05	0.2	GTCACGTGTC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	11.8364	2.6e-05	0.2	GTCACGTGTC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	11.8364	2.6e-05	0.2	GTCACGTGTC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	11.8364	2.6e-05	0.2	GTCACGTGTC
CREB3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	59	72	-	11.8	2.6e-05	0.207	TGGCCACGTGACCT
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	43	56	+	11.8	2.6e-05	0.207	TGGCCACGTGACCT
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	43	56	+	11.8	2.6e-05	0.207	TGGCCACGTGACCT
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	59	75	+	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	59	75	+	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	59	75	+	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	59	75	+	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	77	93	-	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	77	93	-	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	77	93	-	3.66667	2.6e-05	0.424	TGGGCCGGGGTGACCCG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	25	38	+	13.0385	2.6e-05	0.178	GGCTGGTGAGTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	47	-	13.0385	2.6e-05	0.178	GGCTGGTGAGTCAC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	17	27	+	13.1207	2.6e-05	0.0456	AGGCGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	17	27	+	13.1207	2.6e-05	0.0456	AGGCGGGAGCT
ELF3	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	13	25	+	10.8103	2.6e-05	0.126	TAGGCGGAAATGA
ELF3	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	8	20	-	10.8103	2.6e-05	0.126	AAGCAGGAAGCAA
ELF3	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	95	107	+	10.8103	2.6e-05	0.126	AAGCAGGAAGCAA
ERG	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	12.8	2.6e-05	0.102	ACCGGAAACT
ERG	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	12.8	2.6e-05	0.102	ACCGGAAACT
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	25	35	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	25	35	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	35	45	-	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	46	56	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	51	61	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	53	63	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	61	71	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	61	71	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	61	71	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	61	71	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	52	62	-	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	70	80	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	70	80	+	12.1818	2.6e-05	0.0124	GAGCGCGCGCG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	18	31	-	8.47959	2.6e-05	0.0626	GAGTCCTTCTGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	84	97	+	8.47959	2.6e-05	0.0626	GAGTCCTTCTGGTG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	84	97	+	8.47959	2.6e-05	0.0626	GAGTCCTTCTGGTG
Crx	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	32	42	+	12.6552	2.6e-05	1	AATGGGATTAA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	+	12.8909	2.61e-05	0.063	TGCCTGGGGCG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	32	45	-	6.4	2.61e-05	0.14	ACAAAAGGGAAGTG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	32	45	-	6.4	2.61e-05	0.14	ACAAAAGGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	32	45	-	6.4	2.61e-05	0.14	ACAAAAGGGAAGTG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	32	45	-	6.4	2.61e-05	0.14	ACAAAAGGGAAGTG
SPI1	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	70	83	+	6.4	2.61e-05	0.14	ACAAAAGGGAAGTG
SPI1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	91	-	6.4	2.61e-05	0.14	ACAAGGAGGAAGTG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	95	+	12.6182	2.61e-05	0.0548	CGCCCGTGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	95	+	12.6182	2.61e-05	0.0548	CGCCCGTGGGCA
Tcf7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.1.0	63	74	-	11.4355	2.61e-05	1	AGAGATCTAAGG
Tcf7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159272046..159272160,+__1423.1.0.0	63	74	-	11.4355	2.61e-05	1	AGAGATCTAAGG
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	13.5	2.61e-05	1	AGCATATGTC
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	9	25	-	11.7551	2.61e-05	0.338	GGGGCAGATGCAGGACA
Znf423	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	73	87	-	8.21348	2.61e-05	0.196	CGAACCCGGGGGTTC
Znf423	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	28	42	+	8.21348	2.61e-05	0.196	CGAACCCGGGGGTTC
E2F1	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	30	41	-	12.623	2.61e-05	0.41	TTCGGCGCCATT
E2F1	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	45	56	+	12.623	2.61e-05	0.41	TTCGGCGCCATT
E2F1	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	74	85	+	12.623	2.61e-05	0.41	TTCGGCGCCATT
INSM1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	85	96	-	12.3571	2.61e-05	0.146	GGTTAGGGGCCG
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	53	72	-	6.75229	2.61e-05	0.0468	CCACGCCCCCCCCCCCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	59	78	-	6.75229	2.61e-05	0.0468	CCACGCCCCCCCCCCCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	7	26	+	6.75229	2.61e-05	0.0468	CCACGCCCCCCCCCCCTCCC
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	37	56	+	6.75229	2.61e-05	0.0468	CCACGCCCCCCCCCCCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	43	62	+	6.75229	2.61e-05	0.0468	CCACGCCCCCCCCCCCTCCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	37	54	-	-10	2.61e-05	0.0327	AAAAGGGAGGGGGGAAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	37	54	-	-10	2.61e-05	0.0327	AAAAGGGAGGGGGGAAGC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	-	11.8182	2.61e-05	0.168	AGTTTCTGTGGAAACT
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	-	11.8182	2.61e-05	0.168	AGTTTCTGTGGAAACT
TBX21	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	62	71	-	12.5818	2.61e-05	1	TGGGTGTGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	52	65	+	12.3803	2.61e-05	0.202	AGGAAGAGGAAGGA
SPIC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	52	65	+	12.3803	2.61e-05	0.202	AGGAAGAGGAAGGA
SPIC	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	69	82	+	12.3803	2.61e-05	0.202	AGGAAGAGGAAGGA
SPIC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	33	46	-	12.3803	2.61e-05	0.202	AGGAAGAGGAAGGA
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	33	46	-	12.3803	2.61e-05	0.202	AGGAAGAGGAAGGA
REL	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	5	14	+	12.596	2.61e-05	0.243	CGGAGTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	36	45	+	12.596	2.61e-05	0.243	CGGAGTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	70	79	-	12.596	2.61e-05	0.243	CGGAGTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	70	79	-	12.596	2.61e-05	0.243	CGGAGTTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	70	79	-	12.596	2.61e-05	0.243	CGGAGTTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	70	79	-	12.596	2.61e-05	0.243	CGGAGTTTCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	33	44	+	12.4355	2.61e-05	0.281	CCGACCACCATG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	33	44	+	12.4355	2.61e-05	0.281	CCGACCACCATG
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	98	109	-	12.4355	2.61e-05	0.281	GAAACCACCGAG
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	54	68	-	12.6901	2.61e-05	0.341	GATCTGAAAACAAAA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	85	99	+	9.2931	2.61e-05	0.0313	CCCCGCCCGCTCACC
SP4	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	34	50	+	7.16364	2.61e-05	0.0187	GCGGCCCCGCCGCCTGC
SP4	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	65	81	-	7.16364	2.61e-05	0.0187	GCGGCCCCGCCGCCTGC
SP8	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	12	23	-	12.3553	2.61e-05	0.0214	CCCCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	18	29	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	18	29	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	18	29	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	18	29	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	18	29	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	24	35	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	26	37	-	12.3553	2.61e-05	0.0214	TCCACGCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	34	45	-	12.3553	2.61e-05	0.0214	CCCCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	34	45	-	12.3553	2.61e-05	0.0214	CCCCCGCCCAGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	36	47	-	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
SP8	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	80	91	+	12.3553	2.61e-05	0.0214	GCCCCGCCCTCT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	-	11.8163	2.61e-05	0.597	GTGGCGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	+	11.8163	2.61e-05	0.597	GTGGCGCAAT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	45	57	+	12.4918	2.61e-05	0.359	CTGTCTTTCACAT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	67	79	+	12.4918	2.61e-05	0.359	CTGGCTCACACTC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	67	79	+	12.4918	2.61e-05	0.359	CTGGCTCACACTC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	67	79	+	12.4918	2.61e-05	0.359	CTGGCTCACACTC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	67	79	+	12.4918	2.61e-05	0.359	CTGGCTCACACTC
USF1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	17	+	12.7755	2.61e-05	0.116	AGCACGTGGCC
EVX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	+	10.8	2.61e-05	1	CGTCATTAGC
EVX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	+	10.8	2.61e-05	1	CGTCATTAGC
EVX2	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	-	10.8	2.61e-05	1	CGTCATTAGC
EVX2	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	+	10.8	2.61e-05	1	CGTCATTAGC
EVX2	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	-	10.8	2.61e-05	1	CGTCATTAGC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	9	19	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	9	19	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	13	23	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	25	35	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	25	35	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	25	35	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	25	35	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	46	56	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	46	56	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	85	95	+	12.6818	2.61e-05	0.0428	AGCTCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	90	100	+	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	15	25	-	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	15	25	-	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	15	25	-	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	15	25	-	12.6818	2.61e-05	0.0428	GACCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	30	40	-	12.6818	2.61e-05	0.0428	AGCTCCACCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	59	69	-	12.6818	2.61e-05	0.0428	AGCTCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	96	106	-	12.6818	2.61e-05	0.0428	GACCACGCCCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	9	22	-	4.60606	2.62e-05	0.131	CTGAGACGTCATCA
DUX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	3	13	+	13.0851	2.62e-05	1	AAAACCAATCA
DUX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	3	13	+	13.0851	2.62e-05	1	AAAACCAATCA
DUX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	3	13	+	13.0851	2.62e-05	1	AAAACCAATCA
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	92	102	+	13.0851	2.62e-05	1	AAACTGAATCA
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	62	75	-	12.7273	2.62e-05	0.0381	GCAGACGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	62	75	-	12.7273	2.62e-05	0.0381	GCAGACGGGGCCTG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	47	57	-	12.9231	2.62e-05	0.273	GTTCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	47	57	-	12.9231	2.62e-05	0.273	GTTCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	6	16	+	12.9231	2.62e-05	0.273	GTTCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	6	16	+	12.9231	2.62e-05	0.273	GTTCTGAGTCA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	29	39	+	12.9231	2.62e-05	0.273	GTTCTGAGTCA
EGR1	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	1	14	+	12.1731	2.62e-05	0.0141	GCCCCGCCCCTTGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	14	27	-	12.1731	2.62e-05	0.0141	GCCCCGCCCCTTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	30	43	-	12.1731	2.62e-05	0.0141	GTCCCGCCTCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	30	43	-	12.1731	2.62e-05	0.0141	GTCCCGCCTCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	30	43	-	12.1731	2.62e-05	0.0141	GTCCCGCCTCCTTC
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	88	101	+	12.1731	2.62e-05	0.0141	GCCCCGCCCCTTGC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	45	-	11.697	2.62e-05	0.265	CTAGTTTCTGTTTAC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	14	34	-	11.449	2.62e-05	0.0114	GGAGCCTGCAGGGGGTGGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	27	47	-	11.449	2.62e-05	0.0114	AGAGAGAGAGGAGGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	29	49	-	11.449	2.62e-05	0.0114	GAGGCCAGAGGAAAAGGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	29	49	-	11.449	2.62e-05	0.0114	GAGGCCAGAGGAAAAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	29	49	-	11.449	2.62e-05	0.0114	GAGGCCAGAGGAAAAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	29	49	-	11.449	2.62e-05	0.0114	GAGGCCAGAGGAAAAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	5	25	+	11.449	2.62e-05	0.0114	GGAGGGGGGGGGGGGGTGACG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	5	25	+	11.449	2.62e-05	0.0114	GGAGGGGGGGGGGGGGTGACG
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	11	31	+	11.449	2.62e-05	0.0114	GGGGAGGGGAGAGGGAGGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	16	36	+	11.449	2.62e-05	0.0114	GGAGGAGTCACGAGGAGGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	53	73	+	11.449	2.62e-05	0.0114	AAAGCTGTGTGAGGAGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	86	106	+	11.449	2.62e-05	0.0114	AGAGGAGGCGGTGGCAGTGGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	-	12.75	2.62e-05	0.0703	AGCCCTAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	-	12.75	2.62e-05	0.0703	AGCCCTAGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	+	12.75	2.62e-05	0.0703	CGCCCCGGGCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	21	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	21	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	21	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	21	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	21	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	51	65	+	12.3103	2.62e-05	0.008	GTTCCTCCTCCTCTG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	51	65	+	12.3103	2.62e-05	0.008	GTTCCTCCTCCTCTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	74	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	74	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	74	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	74	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	74	+	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	72	86	+	12.3103	2.62e-05	0.008	CCTCCACCCCCGGCG
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	27	41	-	12.3103	2.62e-05	0.008	CCTCCACCCCCGGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	28	42	-	12.3103	2.62e-05	0.008	GCTCCTCCTCCTTCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	28	42	-	12.3103	2.62e-05	0.008	GCTCCTCCTCCTTCA
SP2	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	41	55	-	12.3103	2.62e-05	0.008	CTCCCGCCCACCTTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	43	57	-	12.3103	2.62e-05	0.008	GCCGCGCCCTCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	43	57	-	12.3103	2.62e-05	0.008	GCCGCGCCCTCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	52	66	-	12.3103	2.62e-05	0.008	GTTCCTCCTCCTCTG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	52	66	-	12.3103	2.62e-05	0.008	GTTCCTCCTCCTCTG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	2	21	-	6.74312	2.62e-05	0.0468	CCACCCCACCCCCACCCCTC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	41	60	+	6.74312	2.62e-05	0.0468	CCACCCCACCCCCACCCCTC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	41	60	+	6.74312	2.62e-05	0.0468	CCACCCCACCCCCACCCCTC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	13.0303	2.62e-05	0.171	ATCACGTGCA
SPI1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	44	57	+	6.38182	2.62e-05	0.14	AGGAAGCGGAAGCA
Nr2f6(var.2)	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	64	-	-1.11429	2.62e-05	0.656	CAGGGCCAAAGTTTA
Nr2f6(var.2)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	93	-	-1.11429	2.62e-05	0.656	CAGGGCCAAAGTTTA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	15	29	-	12.2342	2.62e-05	0.149	CCAGAGCAGAGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	53	67	+	12.2342	2.62e-05	0.149	CTTGGGGAGGGGCCA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	53	67	+	12.2342	2.62e-05	0.149	CTTGGGGAGGGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	53	67	+	12.2342	2.62e-05	0.149	CTTGGGGAGGGGCCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	53	67	+	12.2342	2.62e-05	0.149	CTTGGGGAGGGGCCA
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	48	62	-	12.2342	2.62e-05	0.149	CTTGGGGAGGGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	81	95	-	12.2342	2.62e-05	0.149	CCAGAGCAGAGGGAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	81	95	-	12.2342	2.62e-05	0.149	CCAGAGCAGAGGGAA
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	24	35	+	9.79592	2.62e-05	0.106	AGTGACGTCAGG
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	58	69	+	9.79592	2.62e-05	0.106	AGTGACGTCAGG
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	57	-	9.79592	2.62e-05	0.106	AGTGACGTCAGG
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	91	-	9.79592	2.62e-05	0.106	AGTGACGTCAGG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	30	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	30	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	26	35	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	26	35	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	26	35	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	26	35	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	26	35	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	72	81	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	78	87	+	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	18	27	-	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	18	27	-	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	28	37	-	12.3853	2.62e-05	0.0443	CCACCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	34	43	-	12.3853	2.62e-05	0.0443	CCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	1	11	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	1	11	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	7	17	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	7	17	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	13	23	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	15	25	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	15	25	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	28	38	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	28	38	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	51	61	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	88	98	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	88	98	+	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	6	16	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	6	16	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	6	16	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	6	16	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	6	16	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	32	42	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	54	64	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	66	76	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	66	76	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	69	79	-	12.2931	2.62e-05	0.0129	ACCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	69	79	-	12.2931	2.62e-05	0.0129	ACCCCACCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	74	84	-	12.2931	2.62e-05	0.0129	GCCCCGCCCGC
RXRA::VDR	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	35	49	-	8.81651	2.62e-05	1	AGGTCGCCAGGGTCA
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	66	80	+	8.81651	2.62e-05	1	AGGTCGCCAGGGTCA
RXRA::VDR	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	66	80	+	8.81651	2.62e-05	1	AGGTCGCCAGGGTCA
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	+	12.3273	2.62e-05	0.702	GTTGCACAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	+	12.3273	2.62e-05	0.702	GTTGCACAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	+	12.3273	2.62e-05	0.702	GTTGCACAAC
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	+	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	-	12.3273	2.62e-05	0.702	GTTGCACAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	-	12.3273	2.62e-05	0.702	GTTGCACAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	-	12.3273	2.62e-05	0.702	GTGGCGCAAT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	29	41	-	10.7931	2.62e-05	0.126	ATGCCGGAAATGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	29	41	-	10.7931	2.62e-05	0.126	ATGCCGGAAATGA
TFEB	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	12.6154	2.62e-05	0.123	GTCACGTGGC
TFEB	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	12.6154	2.62e-05	0.123	GTCACGTGGC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	37	51	+	11.4714	2.62e-05	0.1	CGAGGTTTGAGGTCG
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	45	61	-	6.27869	2.62e-05	0.563	CGGCCAATCAGAGGCCA
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	48	61	+	12.931	2.62e-05	0.208	CTTCCTGGAAGAGA
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	48	61	+	12.931	2.62e-05	0.208	CTTCCTGGAAGAGA
Stat4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	48	61	+	12.931	2.62e-05	0.208	CTTCCTGGAAGAGA
Stat4	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	54	67	-	12.931	2.62e-05	0.208	CTTCCTGGAAGAGA
CREB3L1	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	21	34	-	10.9091	2.62e-05	0.253	ATGCCACGTGAAAT
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	16	27	+	12.5152	2.62e-05	0.109	GCAGGTCCGCCG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	16	27	+	12.5152	2.62e-05	0.109	GCAGGTCCGCCG
HINFP	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	88	99	-	12.5152	2.62e-05	0.109	GCAGGTCCGCCG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	5	14	-	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	99	108	+	12.9231	2.62e-05	0.439	AAACCACAAG
ETV1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.6364	2.62e-05	0.0875	GCCGGATGTG
ETV1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.6364	2.62e-05	0.0875	GCCGGATGTG
ETV1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.6364	2.62e-05	0.0875	GCCGGATGTG
ETV1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.6364	2.62e-05	0.0875	GCCGGATGTG
IRF7	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	17	30	-	11	2.62e-05	0.605	AGTAAAGTGAAAGC
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	29	42	-	11	2.62e-05	0.605	AGTAAAGTGAAAGC
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	29	42	-	11	2.62e-05	0.605	AGTAAAGTGAAAGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	26	41	+	11.9636	2.62e-05	0.0374	GCACGCGCACGCGCAC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	26	41	+	11.9636	2.62e-05	0.0374	GCACGCGCACGCGCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	26	41	+	11.9636	2.62e-05	0.0374	GCACGCGCACGCGCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	26	41	+	11.9636	2.62e-05	0.0374	GCACGCGCACGCGCAC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	29	44	+	11.9636	2.62e-05	0.0374	CCCCGCCCCCGGGCTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	29	44	+	11.9636	2.62e-05	0.0374	CCCCGCCCCCGGGCTG
EGR4	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	74	89	-	11.9636	2.62e-05	0.0374	GCACGCGCACGCGCAC
KLF14	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	7	20	+	11.1552	2.62e-05	0.0247	AGCCACGCCTATAC
KLF14	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	95	108	-	11.1552	2.62e-05	0.0247	AGCCACGCCTATAC
FLI1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	12.5957	2.62e-05	0.0896	ACCGGAAAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	29	39	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	29	39	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	45	55	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	45	55	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	60	70	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	73	83	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	73	83	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	73	83	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	73	83	+	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	69	79	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	69	79	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	69	79	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
Gabpa	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	76	86	-	12.8033	2.62e-05	0.0432	CCGGAAGCACT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	27	37	+	12.8545	2.62e-05	0.0452	TCTCTTCCGGT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	29	39	+	13.4364	2.63e-05	0.146	TCATGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	29	39	+	13.4364	2.63e-05	0.146	TCATGACTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	31	41	-	13.4364	2.63e-05	0.146	TCATGACTCAT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	39	50	+	6.7069	2.63e-05	0.189	ACACACGTGCCT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	39	50	+	6.7069	2.63e-05	0.189	ACACACGTGCCT
POU4F3	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	22	37	+	12.2441	2.63e-05	1	ATGCGTAATTTATGGG
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	22	32	-	12.6667	2.63e-05	0.0428	GCCCACACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	22	32	-	12.6667	2.63e-05	0.0428	GCCCACACCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	24	40	-	7.14545	2.63e-05	0.0187	GGAGTCCCGCCCCCTCG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	16	26	+	12.3984	2.63e-05	0.0149	GACACGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	16	26	+	12.3984	2.63e-05	0.0149	GACACGCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	89	99	-	12.3984	2.63e-05	0.0149	GACACGCCTCC
ID4	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	16	25	+	13.2623	2.63e-05	0.389	GACACCTGCT
ID4	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	99	-	13.2623	2.63e-05	0.389	GACACCTGCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	9	18	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	10	19	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	14	23	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	28	37	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	54	63	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	58	67	-	13.102	2.63e-05	0.0127	TCCACACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	70	79	-	13.102	2.63e-05	0.0127	TCCACACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	70	79	-	13.102	2.63e-05	0.0127	TCCACACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	78	87	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	87	96	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	101	110	-	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	1	10	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	1	10	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	5	14	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	15	24	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	28	37	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	28	37	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	28	37	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	30	39	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	33	42	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	33	42	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	33	42	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	33	42	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	35	44	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	38	47	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	52	61	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	72	81	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	72	81	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	78	87	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	96	105	+	13.102	2.63e-05	0.0127	GCTCCGCCCT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	-	13.2727	2.63e-05	0.155	TGTGAGTCACC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	+	13.2727	2.63e-05	0.155	TGTGAGTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	-	13.2727	2.63e-05	0.155	TGTGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	-	13.2727	2.63e-05	0.155	TGTGAGTCACC
ELK3	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	12.8966	2.63e-05	0.0819	AACGGAAGTA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	12.8966	2.63e-05	0.0819	AACGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	12.8966	2.63e-05	0.0819	AACGGAAGTA
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	9	26	-	7.77586	2.63e-05	0.182	CCGCCACGCCCACACGTC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	9	26	-	7.77586	2.63e-05	0.182	CCGCCACGCCCACACGTC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	9	26	-	7.77586	2.63e-05	0.182	CCGCCACGCCCACACGTC
XBP1	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	39	52	-	11.8269	2.63e-05	0.446	GACGCCGCGTCACC
XBP1	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	63	76	+	11.8269	2.63e-05	0.446	GACGCCGCGTCACC
XBP1	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	68	81	-	11.8269	2.63e-05	0.446	ATGGCCACGTCGTA
Ascl2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	-	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	-	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	-	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	-	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	76	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	76	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	+	12.7429	2.63e-05	0.173	GGCAGCTGCG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	107	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	107	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	107	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	107	+	12.7429	2.63e-05	0.173	GGCAGCTGCA
NFYB	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	27	41	-	12.6346	2.63e-05	0.105	AAATTCTCCAATGAG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	9	23	+	12.1724	2.63e-05	0.365	GGGCTCCAGGCCAGG
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	9	23	+	12.1724	2.63e-05	0.365	GGGCTCCAGGCCAGG
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	9	23	+	12.1724	2.63e-05	0.365	GGGCTCCAGGCCAGG
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	9	23	+	12.1724	2.63e-05	0.365	GGGCTCCAGGCCAGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	16	29	+	8.44898	2.63e-05	0.0628	GGCGCCGACGGGTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	86	99	-	8.44898	2.63e-05	0.0628	GGCGCCGACGGGTG
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	55	69	+	10.9836	2.63e-05	0.325	GTGAGTCAGCTGAGG
Mafb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	45	56	+	12.5843	2.63e-05	0.668	ATGCTGCTGACT
Mafb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	45	56	+	12.5843	2.63e-05	0.668	ATGCTGCTGACT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	-	12.8723	2.63e-05	0.17	GCTGAGTCATA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	-	12.8723	2.63e-05	0.17	GCTGAGTCATA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	40	57	+	-10.0263	2.63e-05	0.0328	GGGAGGAAGCGCGGCTGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	58	75	-	-10.0263	2.63e-05	0.0328	GGGAGGAAGCGCGGCTGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	38	51	-	9.10638	2.63e-05	0.0959	CGCCCCCTGCGGGC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	38	51	-	9.10638	2.63e-05	0.0959	CGCCCCCTGCGGGC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	73	83	+	12.8367	2.63e-05	0.196	TTTCCAGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	73	83	+	12.8367	2.63e-05	0.196	TTTCCAGGAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	73	83	+	12.8367	2.63e-05	0.196	TTTCCAGGAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	73	83	+	12.8367	2.63e-05	0.196	TTTCCAGGAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	73	83	+	12.8367	2.63e-05	0.196	TTTCCAGGAAT
ELF1	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	62	-	11.5818	2.63e-05	0.093	CCTCCGGAAGTG
GLIS2	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	36	49	+	10.5738	2.63e-05	0.176	GGCCCCCAGCGGTT
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	+	12.8727	2.63e-05	0.063	TCCCTGAGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	-	12.8727	2.63e-05	0.063	TCCCTGAGGCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	32	44	-	5.7551	2.63e-05	0.233	GGGGGAACCCCAG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	32	44	-	5.7551	2.63e-05	0.233	GGGGGAACCCCAG
E2F6	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	39	49	-	13.1034	2.63e-05	0.0458	AAGCGGGAGGA
E2F6	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	66	76	+	13.1034	2.63e-05	0.0458	AAGCGGGAGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	+	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	+	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	-	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	-	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	-	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	+	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	-	12.3115	2.63e-05	0.0554	CGCCCCGGAGGCC
GCM2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	85	94	-	12.5574	2.64e-05	0.718	TATGCGGGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	17	27	-	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	17	27	-	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	30	40	+	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	24	34	-	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	61	71	+	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	61	71	+	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	64	74	-	12.1636	2.64e-05	0.0124	GCGCACGCCCA
NRF1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	75	85	-	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	101	111	+	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	101	111	+	12.1636	2.64e-05	0.0124	CCGCCTGCCCG
RORA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	84	93	-	13.1798	2.64e-05	0.864	GTCAAGGTCA
Zfx	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	29	42	+	12.7121	2.64e-05	0.0381	CGGGGCGTGGCCTT
Zfx	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	44	57	-	12.7121	2.64e-05	0.0381	GGCTCTGGGGCCTA
Zfx	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	58	71	+	12.7121	2.64e-05	0.0381	GGCTCTGGGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	83	96	+	12.7121	2.64e-05	0.0381	CCCCGCTCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	83	96	+	12.7121	2.64e-05	0.0381	CCCCGCTCGGCCTT
GRHL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	84	95	-	12.4138	2.64e-05	1	GAAACCGGTTGC
GRHL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	84	95	-	12.4138	2.64e-05	1	GAAACCGGTTGC
Twist2	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	24	33	+	12.8525	2.64e-05	1	ACCACATGTT
TP73	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	23	40	-	10.9231	2.64e-05	0.609	GGCATGCTGGCTCACGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	26	35	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	27	36	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	27	36	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	23	32	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	23	32	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	23	32	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	23	32	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	33	42	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	45	54	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	47	56	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	47	56	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	47	56	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	47	56	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	51	60	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	51	60	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	70	79	+	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	61	70	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	79	88	-	12.4286	2.64e-05	0.0141	AGGGCGGGTC
NFKB1	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	25	37	+	5.73469	2.64e-05	0.233	AGGGAGAGCCCCG
Alx1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	89	105	-	12.6494	2.64e-05	1	TCAACTAATTAGACCCA
Mecom	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	50	63	+	11.0899	2.64e-05	1	TGGACAAGACAATT
Mecom	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	50	63	+	11.0899	2.64e-05	1	TGGACAAGACAATT
Mecom	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	57	70	-	11.0899	2.64e-05	1	TGGACAAGACAATT
Mecom	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	57	70	-	11.0899	2.64e-05	1	TGGACAAGACAATT
PAX5	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	25	43	+	12.1613	2.64e-05	0.137	GAGGCCTCCGGGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	11	29	-	12.1613	2.64e-05	0.137	GAGGCCAAGCGGGCAGGGC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	50	-	12.1613	2.64e-05	0.137	GAGGCCTCCGGGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	50	-	12.1613	2.64e-05	0.137	GAGGCCTCCGGGGCGGGGC
PAX5	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	65	83	+	12.1613	2.64e-05	0.137	GAGGCCTCCGGGGCGGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	90	-	12.1613	2.64e-05	0.137	GAGGCCTCCGGGGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	-	12.2586	2.64e-05	0.0554	CGCCCCCACGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	-	12.2586	2.64e-05	0.0554	CGCCCCCACGGCT
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	16	35	-	6.7156	2.64e-05	0.0469	ACCCCTCCCCCCCGCCCCCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	24	43	-	6.7156	2.64e-05	0.0469	CCCCTCCTCAGCCCCCACGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	14	33	+	6.7156	2.64e-05	0.0469	CCCCTAACCCCACCCCAAGG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	66	84	-	10.8033	2.64e-05	0.0935	TGGGCAGGAGTGGGCAGCA
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	66	84	-	10.8033	2.64e-05	0.0935	TGGGCAGGAGTGGGCAGCA
Rfx1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	1	14	+	11.9655	2.64e-05	0.164	GTTGCCAAAGCAGC
Rfx1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	101	114	-	11.9655	2.64e-05	0.164	GTTGCCAAAGCAGC
SP4	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	81	97	-	7.12727	2.64e-05	0.0188	CTATCCCCGCCCAACTG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	12	26	+	11.4571	2.64e-05	0.1	CCGGGTCAGGGATGA
KLF16	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	14	24	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	36	46	+	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	41	51	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	41	51	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	41	51	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	41	51	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	52	62	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	56	66	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	57	67	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	57	67	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	77	87	+	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	89	99	+	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	16	26	-	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	16	26	-	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	16	26	-	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	16	26	-	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	28	38	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	31	41	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	48	58	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	49	59	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	53	63	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	53	63	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	53	63	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	53	63	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	53	63	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	69	79	-	12.2759	2.64e-05	0.0129	ACTACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	91	101	-	12.2759	2.64e-05	0.0129	CGCCCGCCCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	53	70	+	-10.0395	2.64e-05	0.0328	AAAAGAGAGCAAGGAGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	28	41	+	12.1538	2.64e-05	0.0142	CTCCCTCCCTCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	28	41	+	12.1538	2.64e-05	0.0142	CTCCCTCCCTCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	28	41	-	12.1538	2.64e-05	0.0142	AGCCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	28	41	-	12.1538	2.64e-05	0.0142	AGCCCGCCCCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	70	83	-	12.1538	2.64e-05	0.0142	CCTCAACCCCCACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	86	99	-	12.1538	2.64e-05	0.0142	GAGCCTCCGCCGCC
GATA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	2	15	+	13.0545	2.64e-05	0.951	AAATTGTTATCACA
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	2	15	+	13.0545	2.64e-05	0.951	AAATTGTTATCACA
GATA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	2	15	+	13.0545	2.64e-05	0.951	AAATTGTTATCACA
GATA2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	2	15	+	13.0545	2.64e-05	0.951	AAATTGTTATCACA
SP2	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	57	71	+	12.2931	2.64e-05	0.00804	TCCCCGCTTCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	62	76	+	12.2931	2.64e-05	0.00804	GTTCCGCCTCAGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	62	76	+	12.2931	2.64e-05	0.00804	GTTCCGCCTCAGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	62	76	+	12.2931	2.64e-05	0.00804	GTTCCGCCTCAGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	62	76	+	12.2931	2.64e-05	0.00804	GTTCCGCCTCAGCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	62	76	+	12.2931	2.64e-05	0.00804	GTTCCGCCTCAGCCT
SP2	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	75	89	+	12.2931	2.64e-05	0.00804	TCCCCGCTTCCGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	26	40	-	12.2931	2.64e-05	0.00804	TCCCCGCTTCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	28	42	-	12.2931	2.64e-05	0.00804	GACCCGCCCTCGGGG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	+	12.6	2.64e-05	0.0548	CGCCCCCAGGGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	+	12.6	2.64e-05	0.0548	CGCCCCCAGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	+	12.6	2.64e-05	0.0548	CGCCCCCAGGGG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	57	68	+	12.6	2.64e-05	0.0548	CACCCGCGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	-	12.6	2.64e-05	0.0548	CGCCCCCAGGGG
Klf12	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	28	42	+	10.7377	2.64e-05	0.0437	AGCCCCGCCCTGTGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	70	81	-	12.5	2.64e-05	0.109	GTGCGTCCGCTC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	25	43	+	12.1935	2.64e-05	0.671	TGATCTCTGGTTCCCCTTC
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	59	77	+	12.1935	2.64e-05	0.671	TGAACCCGAGTAAATCCCT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	60	78	+	12.1935	2.64e-05	0.671	CGCCCTTGAGTAACTCCCG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	60	78	+	12.1935	2.64e-05	0.671	CGCCCTTGAGTAACTCCCG
OLIG1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	12.5192	2.64e-05	1	GCCATATGCT
OLIG1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	12.5192	2.64e-05	1	GCCATATGCT
ZIC3	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	77	91	+	10.4857	2.64e-05	0.101	CGCCCCCTGGCGGGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	24	38	-	10.4857	2.64e-05	0.101	CGCCCCCTGGCGGGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	20	34	+	9.25862	2.64e-05	0.0316	CTCCGCCCCCTCCTG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	29	40	+	12.2069	2.64e-05	0.33	GTGACCACACAT
GLI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	29	40	+	12.2069	2.64e-05	0.33	GTGACCACACAT
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	4	13	+	12.8061	2.64e-05	0.191	CGGGATTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	4	13	+	12.8061	2.64e-05	0.191	CGGGATTCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	6	16	-	12.1273	2.65e-05	0.0124	GCGCGGGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	76	86	+	12.1273	2.65e-05	0.0124	GCGCGGGCCCA
PKNOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	+	5.87755	2.65e-05	0.965	TGACAGCCGTCC
PKNOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	+	5.87755	2.65e-05	0.965	TGACAGCCGTCC
JUNB	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	36	46	+	13.3673	2.65e-05	0.153	ATGTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	71	81	+	13.3673	2.65e-05	0.153	TTATGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	71	81	+	13.3673	2.65e-05	0.153	TTATGACTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	76	86	+	13.3673	2.65e-05	0.153	ATGTGACTCAT
JUNB	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	29	39	-	13.3673	2.65e-05	0.153	ATGTGACTCAT
JUNB	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	69	79	-	13.3673	2.65e-05	0.153	ATGTGACTCAT
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	17	30	-	4.56061	2.65e-05	0.131	CTGTGACGTCAGAA
Crem	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	17	26	+	13.0492	2.65e-05	0.237	CATGACGTAG
Crem	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	89	98	-	13.0492	2.65e-05	0.237	CATGACGTAG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	29	+	12.377	2.65e-05	0.064	CGCCCGGCGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	86	98	-	12.377	2.65e-05	0.064	CGCCCGGCGGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	16	36	-	11.4286	2.65e-05	0.0114	AGGAGAGGGAGGGGCGGGACG
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	69	89	-	11.4286	2.65e-05	0.0114	GAAGAAAGCTGGGGCGGGGAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	78	98	-	11.4286	2.65e-05	0.0114	GAATGCGGCGGGGAGAAAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	85	105	-	11.4286	2.65e-05	0.0114	GAAGGGGCAGCAGGAGAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	17	37	+	11.4286	2.65e-05	0.0114	GAATGCGGCGGGGAGAAAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	26	46	+	11.4286	2.65e-05	0.0114	GAAGAAAGCTGGGGCGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	34	54	+	11.4286	2.65e-05	0.0114	TAAAGAAGGAAGGAAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	34	54	+	11.4286	2.65e-05	0.0114	TAAAGAAGGAAGGAAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	80	100	+	11.4286	2.65e-05	0.0114	GGGGGTGGAGGGAGATGGCGC
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	68	80	+	12.561	2.65e-05	1	AAGGTGTGAGCCG
EOMES	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	68	80	+	12.561	2.65e-05	1	AAGGTGTGAGCCG
EOMES	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	68	80	+	12.561	2.65e-05	1	AAGGTGTGAGCCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	87	100	-	9.08511	2.65e-05	0.0959	TGACACCTGCTGGG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	101	114	-	9.08511	2.65e-05	0.0959	GCACACCCGCCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	28	+	9.08511	2.65e-05	0.0959	TGACACCTGCTGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	1	11	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	11	21	+	13.0862	2.65e-05	0.0448	AGGCGGGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	5	15	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	5	15	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	15	25	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	15	25	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	18	28	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	18	28	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	21	31	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	21	31	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	35	45	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	26	36	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	27	37	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	39	49	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	32	42	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	32	42	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	44	54	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	44	54	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	44	54	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	44	54	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	44	54	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	35	45	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	35	45	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	37	47	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	37	47	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	49	59	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	49	59	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	49	59	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	49	59	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	43	53	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	62	72	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	53	63	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	53	63	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	68	78	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	73	83	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	66	76	-	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	78	88	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	79	89	+	13.0862	2.65e-05	0.0448	GGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	85	95	-	13.0862	2.65e-05	0.0448	AGGCGGGAGCC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	85	95	-	13.0862	2.65e-05	0.0448	AGGCGGGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	85	95	-	13.0862	2.65e-05	0.0448	AGGCGGGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	85	95	-	13.0862	2.65e-05	0.0448	AGGCGGGAGCC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	37	56	+	6.70642	2.65e-05	0.047	CCCGCCCCCTCCCGCCCCCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	70	-	11.5636	2.65e-05	0.093	TGACCGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	70	-	11.5636	2.65e-05	0.093	TGACCGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	90	-	11.5636	2.65e-05	0.093	TGACCGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	90	-	11.5636	2.65e-05	0.093	TGACCGGAAGTA
EGR4	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	12	27	+	11.9455	2.65e-05	0.0374	CCCCCCCCCCGCGAGT
EGR4	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	47	62	+	11.9455	2.65e-05	0.0374	CCCCCCCCCCGCGAGT
EGR4	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	53	68	-	11.9455	2.65e-05	0.0374	CCCCCCCCCCGCGAGT
EGR4	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	88	103	-	11.9455	2.65e-05	0.0374	CCCCCCCCCCGCGAGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	89	104	-	11.9455	2.65e-05	0.0374	TACCGCCGTCGCACTT
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	36	-	6.51724	2.65e-05	0.29	TCCCACGTGCCC
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	43	54	+	6.51724	2.65e-05	0.29	TCCCACGTGCCC
NKX6-1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	-	11.4746	2.65e-05	1	GTAATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	+	11.4746	2.65e-05	1	GTAATTAA
NKX6-1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	+	11.4746	2.65e-05	1	GTAATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	+	11.4746	2.65e-05	1	GTAATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	+	11.4746	2.65e-05	1	GTAATTAA
NKX6-1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	+	11.4746	2.65e-05	1	GTAATTAA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	-	12.7308	2.65e-05	0.0703	CGCCCGGGGCG
ETV6	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	27	36	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	28	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	31	40	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	45	54	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	48	57	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	48	57	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	67	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	69	78	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	61	70	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	84	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	88	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	88	-	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	91	100	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	91	100	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	91	100	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	91	100	+	12.8077	2.65e-05	0.0767	ACCGGAAGCG
USF1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	14	-	12.7347	2.65e-05	0.117	GACACGTGACA
USF1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	111	+	12.7347	2.65e-05	0.117	GACACGTGACA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	11	+	12.8689	2.65e-05	0.183	AGGCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	11	+	12.8689	2.65e-05	0.183	AGGCACGTGC
Arntl	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	50	59	+	12.8689	2.65e-05	0.183	TCTCACGTGC
Arntl	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	56	65	-	12.8689	2.65e-05	0.183	TCTCACGTGC
TBR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	74	83	+	12.6809	2.65e-05	0.898	AAGTGTGAAT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	25	42	+	-10.0526	2.65e-05	0.0328	GGGGCGAGGGGAGGAGGA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	96	113	+	-10.0526	2.65e-05	0.0328	GGGGCGAGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	2	19	-	-10.0526	2.65e-05	0.0328	GGGGCGAGGGGAGGAGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	73	90	-	-10.0526	2.65e-05	0.0328	GGGGCGAGGGGAGGAGGA
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	43	53	+	13.3469	2.65e-05	0.151	CACAGCTGGCG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	43	53	+	13.3469	2.65e-05	0.151	CACAGCTGGCG
NFKB1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	56	68	-	5.71429	2.65e-05	0.233	GTGGGAACCCCCT
Myb	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	7	16	-	13.3607	2.65e-05	0.89	GAAACTGTCA
Myb	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	31	40	-	13.3607	2.65e-05	0.89	GAAACTGTCA
Myb	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	75	84	+	13.3607	2.65e-05	0.89	GAAACTGTCA
Myb	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	99	108	+	13.3607	2.65e-05	0.89	GAAACTGTCA
EHF	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	85	96	+	12.1475	2.65e-05	0.116	ATCCCGGAAGGA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	37	51	+	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
HNF4G	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	37	51	+	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
HNF4G	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	34	48	-	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
HNF4G	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	34	48	-	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
HNF4G	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	67	81	+	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
HNF4G	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	64	78	-	12.3654	2.65e-05	0.335	AGGGAGCAAGGGCCC
Stat4	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	25	38	-	12.9138	2.65e-05	0.208	CTTACGGGAATGGG
Stat4	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	77	90	+	12.9138	2.65e-05	0.208	CTTACGGGAATGGG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	+	12.8182	2.66e-05	0.0489	AGCCTCAGGGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	56	72	+	7.10909	2.66e-05	0.0189	CCGGCCCCGCCTTCCCT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	26	42	-	7.10909	2.66e-05	0.0189	CCGGCCCCGCCTTCCCT
SP4	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	43	59	-	7.10909	2.66e-05	0.0189	CCGGCCCCGCCTTCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	1	12	-	12.3421	2.66e-05	0.0217	CCCCCACCCACC
ATF7	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	17	30	+	9.98571	2.66e-05	0.131	CGATGACCTCATCC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	14	28	+	12.0727	2.66e-05	0.0977	CGCCCCCTGGCGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	14	28	+	12.0727	2.66e-05	0.0977	CGCCCCCTGGCGGGA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	34	48	-	12.0727	2.66e-05	0.0977	TGCCACCCGCCGCCT
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	34	48	-	12.0727	2.66e-05	0.0977	TGCCACCCGCCGCCT
SNAI2	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	97	105	-	12.6512	2.66e-05	0.433	AACAGGTGT
Hic1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	25	33	+	12.5769	2.66e-05	0.516	GTGCCACCC
Hic1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	43	51	+	12.5769	2.66e-05	0.516	GTGCCACCC
SNAI2	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	18	+	12.6512	2.66e-05	0.433	AACAGGTGT
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	87	95	-	12.5769	2.66e-05	0.516	GTGCCACCC
Hic1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	87	95	-	12.5769	2.66e-05	0.516	GTGCCACCC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	12.9091	2.66e-05	0.585	GGCACGTGTT
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	12.9091	2.66e-05	0.585	GGCACGTGTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	57	70	-	12.697	2.66e-05	0.0384	ACAGCTCCGGCCTC
ZIC3	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	77	91	+	10.4714	2.66e-05	0.101	CACCCCCTCCAGAGT
ZIC3	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	24	38	-	10.4714	2.66e-05	0.101	CACCCCCTCCAGAGT
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.6034	2.66e-05	0.0999	ACCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.6034	2.66e-05	0.0999	ACCGGAAGGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	-	12.2951	2.66e-05	0.0554	CCCCCCGCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	-	12.2951	2.66e-05	0.0554	AGCCGCCGGGGCC
GSX2	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	46	55	+	10	2.66e-05	1	CCCCATTAAA
LHX6	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	12.4364	2.66e-05	1	ACTAATTAGA
Npas2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	13.0328	2.66e-05	0.333	AGCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	13.0328	2.66e-05	0.333	AGCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	13.0328	2.66e-05	0.333	AGCACGTGGC
Npas2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	13.0328	2.66e-05	0.333	AGCACGTGGC
EGR3	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	12	26	-	9.24138	2.66e-05	0.0316	CCCCGCCCCTGCGCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	89	103	+	9.24138	2.66e-05	0.0316	CCCCGCCCCTGCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	89	103	+	9.24138	2.66e-05	0.0316	CCCCGCCCCTGCGCT
MLX	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	12.3571	2.66e-05	0.205	CTCACGTGAT
MLX	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	12.3571	2.66e-05	0.205	CTCACGTGAT
PROX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	19	30	+	11.0727	2.66e-05	1	CAAGACTCCTCC
PROX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	19	30	+	11.0727	2.66e-05	1	CAAGACTCCTCC
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	19	30	+	11.0727	2.66e-05	1	CAAGACTCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	36	45	-	12.3761	2.66e-05	0.0447	CTCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	36	45	-	12.3761	2.66e-05	0.0447	CTCCCCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	76	85	-	12.3761	2.66e-05	0.0447	CTCCCCCCCC
CTCF	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	48	66	+	10.7869	2.66e-05	0.0935	TTCCCACAAGGGGGTTCCC
Gabpa	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	14	24	-	12.7869	2.66e-05	0.0437	CCGGAAGCTGT
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	30	44	-	10.7213	2.66e-05	0.0437	TGCCCCACCCACCTT
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	30	44	-	10.7213	2.66e-05	0.0437	TGCCCCACCCACCTT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	30	44	-	10.7213	2.66e-05	0.0437	AGACACGCCCACCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	30	44	-	10.7213	2.66e-05	0.0437	AGACACGCCCACCAG
STAT3	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	87	97	+	12.7755	2.66e-05	0.196	TTTCTGGAAAG
Sox1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	77	91	+	7.31034	2.66e-05	1	GACACTGGGAGTGTG
Sox1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	24	38	-	7.31034	2.66e-05	1	GACACTGGGAGTGTG
Sox1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	24	38	-	7.31034	2.66e-05	1	GACACTGGGAGTGTG
Sox1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	24	38	-	7.31034	2.66e-05	1	GACACTGGGAGTGTG
HOXC10	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	60	-	12.6182	2.66e-05	1	GTCATTAAAA
ESR1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	19	35	+	3.57576	2.66e-05	0.424	GAGGTCACACGGACAGT
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	80	96	-	3.57576	2.66e-05	0.424	GAGGTCACACGGACAGT
ESR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	80	96	-	3.57576	2.66e-05	0.424	GAGGTCACACGGACAGT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	5	17	+	12.3607	2.66e-05	0.064	GGCCTTCGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	5	17	+	12.3607	2.66e-05	0.064	GGCCTTCGGGGCT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	52	65	+	4.5303	2.66e-05	0.131	TAGTGACGTGAGCA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	52	65	+	4.5303	2.66e-05	0.131	TAGTGACGTGAGCA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	9	28	-	6.68807	2.66e-05	0.0471	ACCCCCACCCCCACCAAGCA
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	69	80	+	12.4032	2.66e-05	0.281	GAGACCCCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	7	17	+	11.5	2.67e-05	0.0675	CCGCCTACACA
EGR2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	14	24	-	11.5	2.67e-05	0.0675	ACGCCCACACC
EGR2	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	49	59	+	11.5	2.67e-05	0.0675	ACGCCCACACC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	45	59	+	12.7778	2.67e-05	0.796	GCAAATCAGCACTTT
MAFK	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	32	46	-	12.7778	2.67e-05	0.796	GCAAATCAGCACTTT
KLF14	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	4	17	-	11.1207	2.67e-05	0.0249	GACTCCGCCCCCAG
KLF14	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	28	41	-	11.1207	2.67e-05	0.0249	GGCCCCGCCCAGTC
KLF14	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	74	87	+	11.1207	2.67e-05	0.0249	GGCCCCGCCCAGTC
KLF14	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	98	111	+	11.1207	2.67e-05	0.0249	GACTCCGCCCCCAG
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	+	12.4898	2.67e-05	0.0857	TGCCTTCAGGCT
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	-	12.4898	2.67e-05	0.0857	TGCCTTCAGGCT
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	61	76	-	6.43636	2.67e-05	0.312	GGGCGCAGAGTCCGAC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	61	76	-	6.43636	2.67e-05	0.312	GGGCGCAGAGTCCGAC
ELK4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	21	31	+	12.8	2.67e-05	0.0452	TTGCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	32	42	+	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	32	42	+	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	32	42	+	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	32	42	+	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	53	63	+	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	64	74	+	12.8	2.67e-05	0.0452	TTGCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	72	-	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	72	-	12.8	2.67e-05	0.0452	CGGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	72	-	12.8	2.67e-05	0.0452	CGGCTTCCGGA
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	-	13.0755	2.67e-05	1	CGTGACGTAACA
GLI2	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	25	36	+	12.1897	2.67e-05	0.33	ACGCCCACTCTG
GLI2	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	30	41	-	12.1897	2.67e-05	0.33	ACGCCCACTCTG
GLI2	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	74	85	+	12.1897	2.67e-05	0.33	ACGCCCACTCTG
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	29	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	44	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	44	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	52	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	52	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	52	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	101	+	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	3	13	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	14	24	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	27	37	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	28	38	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	28	38	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	28	38	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	32	42	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	32	42	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	32	42	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	32	42	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	63	73	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	71	81	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	74	84	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	74	84	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	74	84	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	74	84	-	12.3821	2.67e-05	0.0149	GTCCCGCCCCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	37	50	+	8.40816	2.67e-05	0.0634	GGGGGCGGAGGGTG
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	+	5.85714	2.67e-05	0.965	TGACAGCCGTGA
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	+	5.85714	2.67e-05	0.965	TGACAGCCGTGA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	52	69	-	11.3415	2.67e-05	0.103	TGGCACCGGATTGGCTGG
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	52	69	-	11.3415	2.67e-05	0.103	TGGCACCGGATTGGCTGG
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	52	69	-	11.3415	2.67e-05	0.103	TGGCACCGGATTGGCTGG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	52	69	-	11.3415	2.67e-05	0.103	TGGCACCGGATTGGCTGG
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	51	63	-	12.459	2.67e-05	0.359	CTGACTGACACAT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	51	63	-	12.459	2.67e-05	0.359	CTGACTGACACAT
SP2	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	21	35	+	12.2759	2.67e-05	0.00804	ATCCCTCCCTCGCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	23	37	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	26	40	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	32	46	+	12.2759	2.67e-05	0.00804	CCCCCTCCCCAGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	34	48	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	34	48	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	52	66	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	55	69	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	64	78	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	64	78	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	67	81	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	67	81	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	67	81	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	67	81	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	67	81	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	70	84	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	70	84	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	70	84	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	73	87	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	73	87	+	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	31	45	-	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	34	48	-	12.2759	2.67e-05	0.00804	CCTCCTCCTCCTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	46	60	-	12.2759	2.67e-05	0.00804	GCCCCACCCCAGCGA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	46	60	-	12.2759	2.67e-05	0.00804	GCCCCACCCCAGCGA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	46	60	-	12.2759	2.67e-05	0.00804	GCCCCACCCCAGCGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	60	74	-	12.2759	2.67e-05	0.00804	GCCCCACCCATATCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	-	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	+	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	+	12.7115	2.67e-05	0.0703	AGCCCGGGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	40	53	-	9.06383	2.67e-05	0.0959	CCCCGCCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	40	53	-	9.06383	2.67e-05	0.0959	CCCCGCCCGCCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	50	63	-	9.06383	2.67e-05	0.0959	GATTCCCTGCTGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	50	63	-	9.06383	2.67e-05	0.0959	GATTCCCTGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	50	63	-	9.06383	2.67e-05	0.0959	GATTCCCTGCTGTG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	94	107	-	9.06383	2.67e-05	0.0959	CCCCGCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	8	21	+	9.06383	2.67e-05	0.0959	CCCCGCCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	8	21	+	9.06383	2.67e-05	0.0959	CCCCGCCCGCCGCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	49	59	+	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	49	59	+	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	80	+	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	85	+	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	3	13	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	13	23	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	13	23	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	13	23	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	24	34	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	30	40	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	36	46	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	36	46	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	36	46	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	36	46	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	36	46	-	12.2586	2.67e-05	0.0129	CCCCCACCCCT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	29	49	+	11.1613	2.67e-05	0.154	TTTCCCTTTTCCTTTTTCCTT
ESR2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	36	50	-	12.3077	2.67e-05	0.426	AGGTCAGCACCGCCC
ESR2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	65	79	+	12.3077	2.67e-05	0.426	AGGTCAGCACCGCCC
JUND(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	21	35	+	12.7021	2.67e-05	0.311	GGAAGTGACGTCAGG
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	55	69	+	12.7021	2.67e-05	0.311	GGAAGTGACGTCAGG
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	60	-	12.7021	2.67e-05	0.311	GGAAGTGACGTCAGG
JUND(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	94	-	12.7021	2.67e-05	0.311	GGAAGTGACGTCAGG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	63	82	-	6.6789	2.67e-05	0.0472	CCCGCCCCCAACCCACCGCC
EGR2	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	2	12	-	11.4828	2.67e-05	0.0675	GCGCCCCCGCG
EGR2	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	18	28	-	11.4828	2.67e-05	0.0675	GCGCCCCCGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	39	49	-	11.4828	2.67e-05	0.0675	GCGCCCCCGCG
EGR2	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	66	76	+	11.4828	2.67e-05	0.0675	GCGCCCCCGCG
EGR2	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	103	113	+	11.4828	2.67e-05	0.0675	GCGCCCCCGCG
TBX15	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	20	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	20	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	54	61	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	63	70	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	78	85	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	83	90	-	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	102	109	-	11.75	2.67e-05	0.661	GGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	20	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	20	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	54	61	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	63	70	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	78	85	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	83	90	-	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	102	109	-	12.7727	2.67e-05	0.793	GGGTGTGA
Atf3	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	2	9	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	11	18	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	11	18	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	22	29	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	49	56	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	49	56	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	63	70	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	74	81	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	74	81	+	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	83	90	+	12.8197	2.67e-05	0.353	GATGACGC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	9	16	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	14	21	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	15	22	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	19	26	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	24	31	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	24	31	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	58	65	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	64	71	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	69	76	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	106	113	+	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	106	113	+	12.3131	2.67e-05	0.522	GAGGTCAC
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	7	14	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	7	14	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	7	14	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	18	25	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	18	25	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	23	30	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	24	31	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	20	27	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	35	42	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	35	42	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	31	38	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	35	42	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	35	42	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	35	42	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	35	42	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	37	44	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	37	44	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	49	56	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	49	56	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	49	56	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	54	61	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	54	61	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	70	77	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	74	81	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	76	83	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	76	83	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	77	84	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	73	80	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	73	80	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	82	89	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	82	89	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	82	89	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	82	89	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	82	89	+	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	76	83	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	84	91	-	12.4234	2.67e-05	0.1	TGACGCCA
CREB1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	90	97	-	12.4234	2.67e-05	0.1	TGACGCCA
TBX15	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	6	13	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	6	13	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	36	43	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	51	58	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	51	58	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	54	61	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	98	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	98	+	11.75	2.67e-05	0.661	GGGTGTGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	99	106	+	11.75	2.67e-05	0.661	GGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	6	13	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	6	13	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	36	43	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	51	58	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	51	58	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	54	61	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	98	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	98	+	12.7727	2.67e-05	0.793	GGGTGTGA
MGA	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	99	106	+	12.7727	2.67e-05	0.793	GGGTGTGA
Atf3	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	17	24	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	25	32	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	45	52	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	51	58	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	51	58	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	86	93	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	97	104	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	97	104	-	12.8197	2.67e-05	0.353	GATGACGC
Atf3	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	106	113	-	12.8197	2.67e-05	0.353	GATGACGC
NR4A2	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	39	46	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	44	51	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	50	57	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	50	57	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	55	62	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	83	90	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	83	90	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	88	95	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	89	96	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	89	96	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	102	109	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	102	109	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	102	109	-	12.3131	2.67e-05	0.522	GAGGTCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	102	109	-	12.3131	2.67e-05	0.522	GAGGTCAC
GLIS3	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	26	39	+	6.92424	2.67e-05	0.379	TACCCTCCATGGCG
Znf423	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	48	62	+	8.16854	2.67e-05	0.196	CGAACCCCGGGGTTC
NEUROG2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	12.9394	2.67e-05	1	AGCATATGGC
NEUROG2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	12.9394	2.67e-05	1	AGCATATGGC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	+	12.2414	2.67e-05	0.0554	CGCCCGGGAGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	+	12.2414	2.67e-05	0.0554	CGCCCGGGAGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	+	12.2414	2.67e-05	0.0554	CGCCCGGGAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	+	12.8364	2.67e-05	0.063	CGCCTCCGGCC
MTF1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	61	74	+	8.86585	2.67e-05	0.5	GTTCCTCACGGCCC
MTF1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	41	54	-	8.86585	2.67e-05	0.5	GTTCCTCACGGCCC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	1	12	+	11.3279	2.68e-05	0.083	AAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	1	12	+	11.3279	2.68e-05	0.083	AAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	1	12	+	11.3279	2.68e-05	0.083	AAAGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	1	12	+	11.3279	2.68e-05	0.083	AAAGCGGAAGCG
ELF4	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	114	-	11.3279	2.68e-05	0.083	AAAGCGGAAGCG
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	12.5244	2.68e-05	0.129	GACACGTGAT
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	12.5244	2.68e-05	0.129	GACACGTGAT
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	64	75	-	12.3163	2.68e-05	0.146	AGCCTGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	64	75	-	12.3163	2.68e-05	0.146	AGCCTGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	64	75	-	12.3163	2.68e-05	0.146	AGCCTGGGGGTG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	64	75	-	12.3163	2.68e-05	0.146	AGCCTGGGGGTG
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	74	87	-	12.338	2.68e-05	0.203	AAAATGAGGAAAAA
ETV2	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	47	57	+	12.5082	2.68e-05	0.136	AAGCGGAAGCA
ETV2	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	42	-	12.5082	2.68e-05	0.136	GACCGGAAAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	39	59	-	11.4082	2.68e-05	0.0115	AGAGGAGGGGCATAGGTTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	39	59	-	11.4082	2.68e-05	0.0115	AGAGGAGGGGCATAGGTTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	48	68	-	11.4082	2.68e-05	0.0115	CGGGGGGGGGGGGCGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	48	68	-	11.4082	2.68e-05	0.0115	GAGGGAAGGGGTGGGAGGCAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	55	75	-	11.4082	2.68e-05	0.0115	GAAGGCGAGGGAAAGGGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	64	84	-	11.4082	2.68e-05	0.0115	TAAGGAAAGAGGAAGGAAAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	66	86	-	11.4082	2.68e-05	0.0115	GGAGGCCGGGAGGAGGAGGCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	6	26	+	11.4082	2.68e-05	0.0115	GGGGGGAGAGAAGGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	12	32	+	11.4082	2.68e-05	0.0115	GGGAGCAGAGGGGGCGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	12	32	+	11.4082	2.68e-05	0.0115	GGGAGCAGAGGGGGCGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	13	33	+	11.4082	2.68e-05	0.0115	GAGGGGAGAAGAGGAGGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	29	49	+	11.4082	2.68e-05	0.0115	GGAGGCCGGGAGGAGGAGGCG
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	40	60	+	11.4082	2.68e-05	0.0115	GAAGGCGAGGGAAAGGGGCGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	56	76	+	11.4082	2.68e-05	0.0115	AGAGGAGGGGCATAGGTTGGA
E2F4	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	31	41	-	13.069	2.68e-05	0.0451	TCGCGGGAACC
NR2C2	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	83	97	+	11.4286	2.68e-05	0.101	GGGGTGGAGGGGGCA
Srebf1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	99	108	-	11.931	2.68e-05	0.197	CTCACCTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	11.7091	2.68e-05	0.2	GCCACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	11.7091	2.68e-05	0.2	GCCACGTGAT
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	11.7091	2.68e-05	0.2	GCCACGTGAT
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	90	106	-	11.7041	2.68e-05	0.338	GGTTCAGCGGGGAGCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	22	31	-	13.0408	2.68e-05	0.013	CCCACACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	22	31	-	13.0408	2.68e-05	0.013	CCCACACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	33	42	+	13.0408	2.68e-05	0.013	CCCACACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	33	42	+	13.0408	2.68e-05	0.013	CCCACACCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	48	63	-	11.9273	2.68e-05	0.0374	GGCCGCCCGCGCAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	72	83	+	11.5273	2.68e-05	0.093	GCGCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	72	83	+	11.5273	2.68e-05	0.093	GCGCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	72	83	+	11.5273	2.68e-05	0.093	GCGCCGGAAGTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	22	35	-	12.6818	2.68e-05	0.0384	TCCCCTGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	58	71	-	12.6818	2.68e-05	0.0384	GACAGCCAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	58	71	-	12.6818	2.68e-05	0.0384	GACAGCCAGGCCTC
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	88	97	+	13.2857	2.68e-05	0.422	TGCACCTGTG
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	88	97	+	13.2857	2.68e-05	0.422	TGCACCTGTG
HOXB13	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	50	59	+	12.5818	2.68e-05	1	CCCATAAACC
HOXB13	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	56	65	-	12.5818	2.68e-05	1	CCCATAAACC
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	21	33	-	11.9714	2.68e-05	0.729	ACACCAGATGTGG
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	42	54	-	11.9714	2.68e-05	0.729	TCACCAGATGTGC
ZBTB18	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	61	73	+	11.9714	2.68e-05	0.729	TCACCAGATGTGC
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	25	37	-	5.67347	2.68e-05	0.233	GGGGAAGTCCCCG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	45	57	-	5.67347	2.68e-05	0.233	GGGGAAGTCCCCG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	64	76	-	5.67347	2.68e-05	0.233	AGGGGAATTCCTG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	39	51	+	5.67347	2.68e-05	0.233	AGGGGAATTCCTG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	58	70	+	5.67347	2.68e-05	0.233	GGGGAAGTCCCCG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	78	90	+	5.67347	2.68e-05	0.233	GGGGAAGTCCCCG
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	13.0152	2.68e-05	0.171	GTCACGTGGC
MLXIPL	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	13.0152	2.68e-05	0.171	GTCACGTGGC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	69	83	+	12.1364	2.68e-05	0.0789	GCCTCGCGCGTCTTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	69	83	+	12.1364	2.68e-05	0.0789	GCCTCGCGCGTCTTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	69	83	+	12.1364	2.68e-05	0.0789	GCCTCGCGCGTCTTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	69	83	+	12.1364	2.68e-05	0.0789	GCCTCGCGCGTCTTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	69	83	+	12.1364	2.68e-05	0.0789	GCCTCGCGCGTCTTC
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	56	67	-	12.4217	2.68e-05	1	TGATGCTAATTA
TCF3	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	19	-	13.2115	2.68e-05	0.404	CACACCTGTT
TCF3	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	105	+	13.2115	2.68e-05	0.404	CACACCTGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	34	-	12.4364	2.68e-05	0.118	AAGAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	45	55	+	12.4364	2.68e-05	0.118	AAGAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	45	55	+	12.4364	2.68e-05	0.118	AAGAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	60	-	12.4364	2.68e-05	0.118	AAGAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	61	71	+	12.4364	2.68e-05	0.118	AGCCGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	66	76	+	12.4364	2.68e-05	0.118	AGCCGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	66	76	+	12.4364	2.68e-05	0.118	AGCCGGAAGCT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	66	76	+	12.4364	2.68e-05	0.118	AGCCGGAAGCT
ELF5	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	70	-	12.4364	2.68e-05	0.118	AAGAGGAAGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	22	40	+	10.7705	2.68e-05	0.0935	TAGCCAGATGGAGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	22	40	+	10.7705	2.68e-05	0.0935	TAGCCAGATGGAGGCGGGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	33	51	+	10.7705	2.68e-05	0.0935	GGCCCACCAGAGTGAGCCA
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	66	81	+	6.41818	2.68e-05	0.312	GAGGGCGAAGGCCATC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	12.2586	2.68e-05	0.16	CACACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	12.2586	2.68e-05	0.16	CACACGTGCC
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	64	80	-	-11.5286	2.68e-05	0.94	TGTTTTCCCGGAAGCAA
NFYB	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	11	25	+	12.5962	2.68e-05	0.105	TGATCCACCAATGAG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	22	32	-	13.234	2.68e-05	0.197	AGTGAGTCACC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	98	113	-	-4.63462	2.68e-05	0.317	CTACCCGCCACGGCAG
SP4	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	15	31	+	7.07273	2.69e-05	0.019	GAGCCCCCGCCTCCTCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	30	46	-	7.07273	2.69e-05	0.019	TAAGACACACCCACCAG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	30	46	-	7.07273	2.69e-05	0.019	TAAGACACACCCACCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	30	46	-	7.07273	2.69e-05	0.019	TAAGACACACCCACCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	48	64	-	7.07273	2.69e-05	0.019	TAAGACACACCCACCAG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	48	64	-	7.07273	2.69e-05	0.019	TAAGACACACCCACCAG
Rhox11	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	1	17	-	12.5132	2.69e-05	1	ACGACGCTGTAAGGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	28	42	-	12.0545	2.69e-05	0.0983	GCCGCCCCACAGCGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	24	41	+	-10.0921	2.69e-05	0.0328	GAGAGGGAGGCCGGGAGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	71	88	-	-10.0921	2.69e-05	0.0328	GGAGTGAGTGGAGGCGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	74	91	-	-10.0921	2.69e-05	0.0328	GAGAGGGAGGCCGGGAGG
Tcf7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	75	86	-	11.4032	2.69e-05	1	CAACAGCAAAGG
Tcf7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	75	86	-	11.4032	2.69e-05	1	CAACAGCAAAGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	-	12.3443	2.69e-05	0.064	TCCCCCGGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	+	12.3443	2.69e-05	0.064	TCCCCCGGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	+	12.3443	2.69e-05	0.064	TCCCCCGGCGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	+	12.3443	2.69e-05	0.064	TCCCCCGGCGGCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	66	75	+	12.6034	2.69e-05	0.109	CACACCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	73	82	+	12.6034	2.69e-05	0.109	CGCATCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	73	82	+	12.6034	2.69e-05	0.109	CGCATCTGCT
Rarb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	21	36	+	-0.206897	2.69e-05	0.851	ACAGGTCAGATGGTCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	80	99	-	6.66055	2.69e-05	0.0473	AACCAAACAACAAACCAACT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	43	-	12.9808	2.69e-05	0.182	GCCTGATGACTCAT
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	84	97	-	10.5246	2.69e-05	0.176	AACCCCCAGCGCAG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	84	97	-	10.5246	2.69e-05	0.176	AACCCCCAGCGCAG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	5	18	+	10.5246	2.69e-05	0.176	AGCCCCACGCAGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	5	18	+	10.5246	2.69e-05	0.176	AGCCCCACGCAGCG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	5	18	+	10.5246	2.69e-05	0.176	AGCCCCACGCAGCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	5	18	+	10.5246	2.69e-05	0.176	AGCCCCACGCAGCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	5	18	+	10.5246	2.69e-05	0.176	AGCCCCACGCAGCG
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	28	42	+	8.1573	2.69e-05	0.196	CCACCCTCAGGTGGC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	28	42	+	8.1573	2.69e-05	0.196	CCACCCTCAGGTGGC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	12.8103	2.69e-05	0.0768	TCCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	12.8103	2.69e-05	0.0768	TCCGGAAGTG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	12.8103	2.69e-05	0.0768	TCCGGAAGTG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	12.8103	2.69e-05	0.0768	TCCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.8103	2.69e-05	0.0832	ACCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.8103	2.69e-05	0.0832	ACCGGAAGGG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	12.8103	2.69e-05	0.0768	TCCGGAAGTG
MYF6	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	+	12.4545	2.69e-05	1	AGCAGCTGTC
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	+	12.4545	2.69e-05	1	AGCAGCTGTC
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	+	12.4545	2.69e-05	1	AGCAGCTGTC
Myog	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	32	+	13.3673	2.69e-05	0.121	CACAGCTGCGA
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	83	93	-	13.3673	2.69e-05	0.121	CACAGCTGCGA
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	83	93	-	13.3673	2.69e-05	0.121	CACAGCTGCGA
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	83	93	-	13.3673	2.69e-05	0.121	CACAGCTGCGA
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	83	93	-	13.3673	2.69e-05	0.121	CACAGCTGCGA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	28	42	-	10.4429	2.69e-05	0.101	GCCGCCCCACAGCGC
ZIC3	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	96	110	-	10.4429	2.69e-05	0.101	CACCTCCCGCAGCAC
NRF1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	35	45	+	12.1091	2.69e-05	0.0126	GCGGTTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	90	100	+	12.1091	2.69e-05	0.0126	GAGCCTGTGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	95	105	+	12.1091	2.69e-05	0.0126	GCGGTTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	95	105	+	12.1091	2.69e-05	0.0126	GCGGTTGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	70	80	-	12.1091	2.69e-05	0.0126	GCGGTTGCGCC
SPI1	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	6	19	-	6.29091	2.69e-05	0.141	CAATAGAGGAAGCC
SPI1	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	36	49	+	6.29091	2.69e-05	0.141	CAATAGAGGAAGCC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	66	79	-	6.29091	2.69e-05	0.141	CAATAGAGGAAGCC
SPI1	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	96	109	+	6.29091	2.69e-05	0.141	CAATAGAGGAAGCC
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	45	59	+	-1.22857	2.69e-05	0.656	CAGGGCCAAAGGTTG
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	45	59	+	-1.22857	2.69e-05	0.656	CAGGGCCAAAGGTTG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	104	-	-1.22857	2.69e-05	0.656	CAGGGCCAAAGGTTG
IRF2	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	87	104	+	8.24771	2.69e-05	0.567	GGGAAGTGAAAGGCGCCA
IRF2	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	11	28	-	8.24771	2.69e-05	0.567	GGGAAGTGAAAGGCGCCA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	60	70	-	13.3265	2.69e-05	0.151	AACAGCTGATC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	60	70	-	13.3265	2.69e-05	0.151	AACAGCTGATC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	94	104	-	13.3265	2.69e-05	0.151	GACAGGTGCGG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	65	77	-	10.7241	2.69e-05	0.126	CCGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	65	77	-	10.7241	2.69e-05	0.126	CCGCCGGAAGTGA
INSM1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	41	52	+	12.2857	2.69e-05	0.146	GGGAAGGGGTCA
INSM1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	63	74	-	12.2857	2.69e-05	0.146	GGGAAGGGGTCA
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	101	112	-	12.2857	2.69e-05	0.146	GGGAAGGGGTCA
SP2	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	1	15	+	12.2586	2.69e-05	0.00809	GTTCCTCCTCCGCCA
SP2	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	46	60	+	12.2586	2.69e-05	0.00809	GTTCCTCCTCCGCCA
SP2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	80	94	+	12.2586	2.69e-05	0.00809	GCTCCTCCCCGGGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	82	96	+	12.2586	2.69e-05	0.00809	CTCCCACCTCCCTTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	15	29	-	12.2586	2.69e-05	0.00809	TCCCTGCCTCCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	24	38	-	12.2586	2.69e-05	0.00809	CCCCTTCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	55	69	-	12.2586	2.69e-05	0.00809	GTTCCTCCTCCGCCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	55	69	-	12.2586	2.69e-05	0.00809	GTTCCTCCTCCGCCA
SP2	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	100	114	-	12.2586	2.69e-05	0.00809	GTTCCTCCTCCGCCA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	36	50	+	11.4143	2.69e-05	0.101	TGGGGGCGGAGGGTG
IRF9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	61	75	-	1.36364	2.69e-05	0.506	AAAGAAAGCAAAACA
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	8	21	-	11.931	2.69e-05	0.166	GCGACCATGGTAAC
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	36	45	+	13.4429	2.69e-05	0.702	TCATTGTTTT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	69	78	+	13.4429	2.69e-05	0.702	TCATTGTTTT
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	69	78	+	13.4429	2.69e-05	0.702	TCATTGTTTT
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	75	84	+	13.4429	2.69e-05	0.702	TCATTGTTTT
Sox3	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	85	94	-	13.069	2.69e-05	0.659	GCTTTGTTTC
Sox6	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	37	46	-	13.4429	2.69e-05	0.702	TCATTGTTTT
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	+	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	-	12.5	2.69e-05	0.765	GTGGCGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	-	12.5	2.69e-05	0.765	GTGGCGCAAT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.7636	2.69e-05	0.102	TCCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.7636	2.69e-05	0.102	TCCGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.7636	2.69e-05	0.102	TCCGGAAGTA
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.7636	2.69e-05	0.102	TCCGGAAGTA
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	74	93	-	11.2195	2.7e-05	1	ATTGACACATGAATGAGAGC
TBX19	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	74	93	-	11.2195	2.7e-05	1	ATTGACACATGAATGAGAGC
TBX19	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	74	93	-	11.2195	2.7e-05	1	ATTGACACATGAATGAGAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	2	15	+	12.1154	2.7e-05	0.0144	CCCTAGCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	2	15	+	12.1154	2.7e-05	0.0144	CCCTAGCCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	14	27	+	12.1154	2.7e-05	0.0144	ACCCCGCCTCCTTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	25	38	-	12.1154	2.7e-05	0.0144	CCTCAGCCCCCACG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	75	88	+	12.1154	2.7e-05	0.0144	CTATCACCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	75	88	+	12.1154	2.7e-05	0.0144	CTATCACCCCCGCC
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	36	48	-	12.32	2.7e-05	1	GTTATGCAAATGC
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	36	48	-	12.32	2.7e-05	1	GTTATGCAAATGC
POU3F3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	36	48	-	12.32	2.7e-05	1	GTTATGCAAATGC
POU3F3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	36	48	-	12.32	2.7e-05	1	GTTATGCAAATGC
POU3F3	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	67	79	+	12.32	2.7e-05	1	GTTATGCAAATGC
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	3	13	+	12.3091	2.7e-05	0.244	GTTCCTGGAAT
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	47	57	-	12.3091	2.7e-05	0.244	GTTCCTGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	49	59	-	12.3091	2.7e-05	0.244	GTTATAGGAAA
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	49	59	-	12.3091	2.7e-05	0.244	GTTATAGGAAA
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	73	83	-	12.3091	2.7e-05	0.244	ATTCCTGGAAA
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	73	83	-	12.3091	2.7e-05	0.244	ATTCCTGGAAA
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	73	83	-	12.3091	2.7e-05	0.244	ATTCCTGGAAA
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	73	83	-	12.3091	2.7e-05	0.244	ATTCCTGGAAA
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	73	83	-	12.3091	2.7e-05	0.244	ATTCCTGGAAA
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	15	33	-	12.1613	2.7e-05	0.671	TGCCCTCTGGTGGAATTTG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	10	24	+	10.6885	2.7e-05	0.0437	GGCCCCGCCTTTTTC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	10	24	+	10.6885	2.7e-05	0.0437	GGCCCCGCCTTTTTC
Klf12	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	91	105	-	10.6885	2.7e-05	0.0437	GGCCCCGCCTTTTTC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	8	22	-	9.92105	2.7e-05	0.179	AAAATGACTCGGCCG
Bach1::Mafk	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	13	27	-	9.92105	2.7e-05	0.179	AAAATGACTCGGCCG
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	88	102	+	9.92105	2.7e-05	0.179	AAAATGACTCGGCCG
Bach1::Mafk	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	93	107	+	9.92105	2.7e-05	0.179	AAAATGACTCGGCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	69	79	+	12.2414	2.7e-05	0.0129	CCTACGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	36	46	-	12.2414	2.7e-05	0.0129	CCTACGCCCCC
GLI2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	14	25	-	12.1724	2.7e-05	0.33	CAGACCACGCTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	42	53	+	12.1724	2.7e-05	0.33	GCGGCCACTCTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	42	53	+	12.1724	2.7e-05	0.33	GCGGCCACTCTG
ELF5	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	45	-	12.4182	2.7e-05	0.118	AGGCGGAAGTC
ELF5	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	54	64	+	12.4182	2.7e-05	0.118	AGGCGGAAGTC
ELF5	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	61	-	12.4182	2.7e-05	0.118	AGGCGGAAGTC
ELF5	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	70	80	+	12.4182	2.7e-05	0.118	AGGCGGAAGTC
OLIG2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	12.5345	2.7e-05	1	AGCATATGGC
OLIG2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	12.5345	2.7e-05	1	AGCATATGGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	66	80	-	12.1207	2.7e-05	0.365	AAAGTGAAGGTCATG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	32	48	-	7.05455	2.7e-05	0.019	CCCGCCCCGCCCCGCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	32	48	-	7.05455	2.7e-05	0.019	CCCGCCCCGCCCCGCTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	21	31	+	12.3273	2.7e-05	0.22	ACCCGGAAGCC
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	21	31	+	12.3273	2.7e-05	0.22	ACCCGGAAGCC
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	21	31	+	12.3273	2.7e-05	0.22	ACCCGGAAGCC
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	52	62	-	12.3273	2.7e-05	0.22	ACCCGGAACTA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	52	62	-	12.3273	2.7e-05	0.22	ACCCGGAACTA
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	75	85	+	12.3273	2.7e-05	0.22	ACCCGGAAGCC
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	75	85	+	12.3273	2.7e-05	0.22	ACCCGGAAGCC
ESR2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	59	73	-	12.2885	2.7e-05	0.426	AGGCCACCACGCCCC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	29	40	+	11.5091	2.7e-05	0.093	CTCCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	41	52	+	11.5091	2.7e-05	0.093	AGCCAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	41	52	+	11.5091	2.7e-05	0.093	AGCCAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	69	80	+	11.5091	2.7e-05	0.093	AGCCAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	69	80	+	11.5091	2.7e-05	0.093	AGCCAGGAAGTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	44	57	-	12.6667	2.7e-05	0.0385	GGAGTTGCGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	44	57	-	12.6667	2.7e-05	0.0385	GGAGTTGCGGCCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	1	15	-	12.1212	2.7e-05	0.0789	CTTCCGCGAGATCTG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	1	15	-	12.1212	2.7e-05	0.0789	CTTCCGCGAGATCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	2	16	-	12.1212	2.7e-05	0.0789	CTCCCGCGAGGAGCG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	2	16	-	12.1212	2.7e-05	0.0789	CTCCCGCGAGGAGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	2	16	-	12.1212	2.7e-05	0.0789	CTCCCGCGAGGAGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	2	16	-	12.1212	2.7e-05	0.0789	CTCCCGCGAGGAGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	2	16	-	12.1212	2.7e-05	0.0789	CTCCCGCGAGGAGCG
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	20	37	+	7.68966	2.7e-05	0.182	AGTCCACGCCCACCCGGA
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	20	37	+	7.68966	2.7e-05	0.182	AGTCCACGCCCACCCGGA
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	20	37	+	7.68966	2.7e-05	0.182	AGTCCACGCCCACCCGGA
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	20	37	+	7.68966	2.7e-05	0.182	AGTCCACGCCCACCCGGA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	18	36	+	10.7541	2.7e-05	0.0935	AGGCCACTAGGGGAGGGAA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	18	36	+	10.7541	2.7e-05	0.0935	AGGCCACTAGGGGAGGGAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	18	36	+	10.7541	2.7e-05	0.0935	AGGCCACTAGGGGAGGGAA
ZNF740	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	36	45	+	12.3303	2.7e-05	0.0449	CCCCCCGCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	38	47	+	12.3303	2.7e-05	0.0449	CCCCCCGCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	38	47	+	12.3303	2.7e-05	0.0449	CCCCCCGCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	53	62	+	12.3303	2.7e-05	0.0449	CCCCCCGCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	70	79	-	12.3303	2.7e-05	0.0449	CCCCCCGCAC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	42	55	+	12.3239	2.7e-05	0.203	GAGAAGAGGAAGTG
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	42	55	+	12.3239	2.7e-05	0.203	GAGAAGAGGAAGTG
SPIC	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	73	-	12.3239	2.7e-05	0.203	GAGAAGAGGAAGTG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	64	77	+	11.7286	2.7e-05	0.207	CGGAGACGTCAGCG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	64	77	+	11.7286	2.7e-05	0.207	CGGAGACGTCAGCG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	64	77	+	11.7286	2.7e-05	0.207	CGGAGACGTCAGCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	64	77	+	11.7286	2.7e-05	0.207	CGGAGACGTCAGCG
PRDM1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	45	59	-	12.1091	2.7e-05	0.276	GGGAGGGGAAAGGGG
TP73	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	29	46	-	10.8654	2.7e-05	0.609	GGCGAGCCGGGACTTGCG
TP73	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	69	86	+	10.8654	2.7e-05	0.609	GGCGAGCCGGGACTTGCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	12	25	+	11.0862	2.7e-05	0.0251	GCCCCCGCCCCCGT
KLF14	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	1	14	-	11.0862	2.7e-05	0.0251	TGACCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	28	41	+	11.0862	2.7e-05	0.0251	TGCCCCGCCTCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	28	41	+	11.0862	2.7e-05	0.0251	TGCCCCGCCTCTTC
KLF14	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	65	78	-	11.0862	2.7e-05	0.0251	GCCCACGCCCTCCC
KLF14	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	101	114	+	11.0862	2.7e-05	0.0251	TGACCCGCCCCTGC
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	26	37	-	12.81	2.71e-05	0.884	TGTTTGCTCTGC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	+	12.2623	2.71e-05	0.0554	GGCCCGCGGGGGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	-	12.2623	2.71e-05	0.0554	GGCCCGCGGGGGC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	-	12.2623	2.71e-05	0.0554	GGCCCGCGGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	-	12.2623	2.71e-05	0.0554	GCCCCCAAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	-	12.2623	2.71e-05	0.0554	GCCCCCAAGGGCG
ZIC3	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	91	105	+	10.4286	2.71e-05	0.101	CAAACCCCGCCGTGC
ZIC3	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	10	24	-	10.4286	2.71e-05	0.101	CAAACCCCGCCGTGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	59	79	-	11.3878	2.71e-05	0.0116	GAAGGCAGCGGCGCGGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	1	21	+	11.3878	2.71e-05	0.0116	GGAGAAGAAAAGAAGAGGTGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	39	59	+	11.3878	2.71e-05	0.0116	GGAGGACAGCAGAAAAGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	41	61	+	11.3878	2.71e-05	0.0116	GAGGCGGGAGGAGGCGGGAGG
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	+	12.2069	2.71e-05	0.0554	CGCCCCCACGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	+	12.2069	2.71e-05	0.0554	CGCCCCCACGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	+	12.2069	2.71e-05	0.0554	CGCCCCCACGGCG
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	-	12.2069	2.71e-05	0.0554	CGCCCCCACGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	-	12.3279	2.71e-05	0.064	CGCCCCCCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	-	12.3279	2.71e-05	0.064	CGCCCCCCAGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	+	12.3279	2.71e-05	0.064	CGCCCCCCAGGCC
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	22	38	-	6.18033	2.71e-05	0.563	GGGGCAGGCGGGGGACA
Stat6	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	32	46	-	12.8621	2.71e-05	0.594	AAGTTCCACAGAATG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	11.25	2.71e-05	0.145	AGCACGTGCG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	11.25	2.71e-05	0.145	AGCACGTGCG
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	11.25	2.71e-05	0.145	AGCACGTGCG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	11.25	2.71e-05	0.145	AGCACGTGCG
SP8	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	10	21	+	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	9	20	-	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	9	20	-	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	34	45	+	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	34	45	+	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	95	106	+	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
SP8	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	94	105	-	12.3289	2.71e-05	0.022	ACCCCGCCTCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	51	66	+	11.9091	2.71e-05	0.0374	CCCCGCCGCCGCACCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	51	66	+	11.9091	2.71e-05	0.0374	CCCCGCCGCCGCACCG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	8	18	-	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	8	18	-	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	25	35	+	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	32	42	+	13.2364	2.71e-05	0.146	GCATGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	34	44	-	13.2364	2.71e-05	0.146	CAGTGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	36	46	-	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	36	46	-	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	46	56	-	13.2364	2.71e-05	0.146	GCATGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	46	56	-	13.2364	2.71e-05	0.146	GCATGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	66	76	+	13.2364	2.71e-05	0.146	GCGTGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	66	76	+	13.2364	2.71e-05	0.146	GCGTGAGTCAC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	58	75	+	-10.1184	2.71e-05	0.0328	GGGGAGGAGGCAGGGAAG
YY1	WILDTYPE__mrna.noflip.NA__chr10:26727261..26727375,+__975.1.0.0	68	79	+	12.5	2.71e-05	0.16	CAAAATGGTTCC
PAX9	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	72	88	+	4.4	2.71e-05	0.463	CGCCCCGCATCGTTACC
PAX9	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	27	43	-	4.4	2.71e-05	0.463	CGCCCCGCATCGTTACC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	39	-	13.0976	2.71e-05	0.472	ATCACGTCAC
REST	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	7	27	+	7.57143	2.71e-05	0.208	TGCGCGACCTTGGAGCGCGCA
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	7	27	+	7.57143	2.71e-05	0.208	TGCGCGACCTTGGAGCGCGCA
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	19	39	+	7.57143	2.71e-05	0.208	TGCGCGACCTTGGAGCGCGCA
REST	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	39	59	+	7.57143	2.71e-05	0.208	TGCGCGACCTTGGAGCGCGCA
IRF1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	57	77	-	11.129	2.71e-05	0.154	TTCCACTTTCATTTCCGTGAA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	39	-	12.3265	2.71e-05	0.285	TAACACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	39	-	12.3265	2.71e-05	0.285	TAACACGTGGA
TBP	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	46	60	+	12.125	2.71e-05	0.402	GTATAAATAGAAGTG
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	96	107	-	12.6727	2.71e-05	1	AGACATATGCCC
MAFG	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	2	22	+	11.5306	2.71e-05	0.929	AAGGAGATGAGTAAGCAACTC
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	93	113	-	11.5306	2.71e-05	0.929	AAGGAGATGAGTAAGCAACTC
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	93	113	-	11.5306	2.71e-05	0.929	AAGGAGATGAGTAAGCAACTC
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	39	52	-	12.8793	2.71e-05	0.208	TTGACGGGAAGGCG
Stat4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	39	52	-	12.8793	2.71e-05	0.208	TTGACGGGAAGGCG
Stat4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	63	76	+	12.8793	2.71e-05	0.208	TTGACGGGAAGGCG
NFYB	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	36	50	+	12.5769	2.71e-05	0.105	TGCACAGCCAATCAG
NFYB	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	30	44	-	12.5769	2.71e-05	0.105	TGCACAGCCAATCAG
NFYB	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	71	85	+	12.5769	2.71e-05	0.105	TGCACAGCCAATCAG
NFYB	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	65	79	-	12.5769	2.71e-05	0.105	TGCACAGCCAATCAG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	64	75	+	11.3115	2.71e-05	0.0832	TCACCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	64	75	+	11.3115	2.71e-05	0.0832	TCACCGGAAGTC
ELF4	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	51	-	11.3115	2.71e-05	0.0832	TCACCGGAAGTC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	12.0816	2.71e-05	0.107	TCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	12.0816	2.71e-05	0.107	TCCACGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	12.0816	2.71e-05	0.107	TCCACGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	12.0816	2.71e-05	0.107	TCCACGTGAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	73	82	+	12.3091	2.71e-05	0.702	TTTGCGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	73	82	+	12.3091	2.71e-05	0.702	TTTGCGCAAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	25	36	-	12.5	2.71e-05	0.365	GCGCCCACCGGG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	25	36	-	12.5	2.71e-05	0.365	GCGCCCACCGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	1	11	-	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	14	24	-	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	23	33	-	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	68	78	-	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	91	101	-	13.0172	2.71e-05	0.0458	GCGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	91	101	-	13.0172	2.71e-05	0.0458	GCGAGGGAAGC
E2F6	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	14	24	+	13.0172	2.71e-05	0.0458	GCGAGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	52	62	+	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	52	62	+	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	52	62	+	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	52	62	+	13.0172	2.71e-05	0.0458	GCGAGGGAGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	73	+	13.2857	2.71e-05	0.13	ATCAGCTGTTGCG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	73	+	13.2857	2.71e-05	0.13	ATCAGCTGTTGCG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	19	29	+	13.3061	2.71e-05	0.154	TTATGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	19	29	+	13.3061	2.71e-05	0.154	TTATGACTCAT
Foxd3	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	49	60	+	12.6522	2.71e-05	1	AAATATTTGTTC
Foxd3	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	55	66	-	12.6522	2.71e-05	1	AAATATTTGTTC
NR2C2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	55	+	11.4	2.71e-05	0.102	GGGGGTGGGGGGTGG
FOXC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	82	93	-	12.5347	2.71e-05	1	AATGTAAACAGT
FOXC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	82	93	-	12.5347	2.71e-05	1	AATGTAAACAGT
SP4	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	34	50	+	7.03636	2.71e-05	0.0191	CCACCCCCGCCCCCGCA
SP4	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	65	81	-	7.03636	2.71e-05	0.0191	CCACCCCCGCCCCCGCA
ELF3	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	35	47	-	10.7069	2.71e-05	0.126	GAGACGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	68	80	+	10.7069	2.71e-05	0.126	GAGACGGAAGTCA
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	68	80	+	10.7069	2.71e-05	0.126	GAGACGGAAGTCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	12.1273	2.72e-05	0.0777	AGCGGAAGCG
ETV5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.1273	2.72e-05	0.0777	CCCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	12.1273	2.72e-05	0.0777	AGCGGAAGCG
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	5	18	-	9.47368	2.72e-05	0.56	TAGACAGCTGCTGA
RARA	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	32	49	-	-4.98485	2.72e-05	1	GCGGCAATGAGGTCAGTG
RARA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	66	83	+	-4.98485	2.72e-05	1	GCGGCAATGAGGTCAGTG
RARA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	66	83	+	-4.98485	2.72e-05	1	GCGGCAATGAGGTCAGTG
KLF13	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	25	42	+	7.67241	2.72e-05	0.182	ACGTCACGCCCACCGCTC
EHF	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	19	-	12.0984	2.72e-05	0.116	GAGCAGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	96	107	+	12.0984	2.72e-05	0.116	GAGCAGGAAGTG
IRF9	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	73	87	-	1.32727	2.72e-05	0.506	AAGGGAACAGAAACT
HIC2	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	84	92	+	11.6182	2.72e-05	0.283	GTGCCCGCT
HIC2	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	23	31	-	11.6182	2.72e-05	0.283	GTGCCCGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	33	47	+	12.2414	2.72e-05	0.00813	CTTCCGCCTCCGAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	33	47	+	12.2414	2.72e-05	0.00813	CTTCCGCCTCCGAGC
SP2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	64	78	+	12.2414	2.72e-05	0.00813	CTCCCTCCTTCCTCC
SP2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	89	103	+	12.2414	2.72e-05	0.00813	GCCCCGCTCCGTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	98	112	+	12.2414	2.72e-05	0.00813	AGCCCTCCCCTACCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	98	112	+	12.2414	2.72e-05	0.00813	AGCCCTCCCCTACCC
SP2	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	3	17	-	12.2414	2.72e-05	0.00813	AGCCCTCCCCTACCC
SP2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	12	26	-	12.2414	2.72e-05	0.00813	GCCCCGCTCCGTCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	20	34	-	12.2414	2.72e-05	0.00813	TCCCCTCCTTCCCGG
SP2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	37	51	-	12.2414	2.72e-05	0.00813	CTCCCTCCTTCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	67	81	-	12.2414	2.72e-05	0.00813	CTCCCACCTCTTCTC
Klf12	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	12	26	+	10.6721	2.72e-05	0.0437	AGCCCCGCCCCCAAA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	26	40	+	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	26	40	+	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	26	40	+	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	26	40	+	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	29	43	-	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	72	86	+	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	76	90	+	10.6721	2.72e-05	0.0437	GATCACACCCTAAAT
Klf12	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	75	89	-	10.6721	2.72e-05	0.0437	CGCCACGCCCCGGAA
Klf12	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	89	103	-	10.6721	2.72e-05	0.0437	AGCCCCGCCCCCAAA
LHX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	12.2222	2.72e-05	1	GCCAATTAGC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
Hes1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	10.5874	2.72e-05	0.0721	GCCACGTGAC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	39	+	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	36	48	-	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	36	48	-	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	62	+	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	62	+	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	79	+	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	76	88	-	12.3115	2.72e-05	0.064	GGCCTCCGGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	+	12.3115	2.72e-05	0.064	GCCCCCCCAGGCA
CREB3	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	10	23	+	11.7143	2.72e-05	0.207	CAGCCACGTGACCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	23	41	+	12.1129	2.72e-05	0.137	GTGCCCAGCCGGGCGCGGT
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	23	41	+	12.1129	2.72e-05	0.137	GTGCCCAGCCGGGCGCGGT
PAX5	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	41	59	-	12.1129	2.72e-05	0.137	CAACGCAGTAAAGCGGGGG
ZIC3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	76	90	-	10.4143	2.72e-05	0.101	TCCACCCCACTGCGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	29	39	+	12.7818	2.72e-05	0.0454	CTACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	29	39	+	12.7818	2.72e-05	0.0454	CTACTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	40	50	+	12.7818	2.72e-05	0.0454	GGACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	40	50	+	12.7818	2.72e-05	0.0454	GGACTTCCGGA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	81	-	11.4909	2.72e-05	0.093	TCGCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	81	-	11.4909	2.72e-05	0.093	TCGCCGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	81	-	11.4909	2.72e-05	0.093	TCGCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	81	-	11.4909	2.72e-05	0.093	TCGCCGGAAGTC
POU3F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	40	51	+	12.3855	2.72e-05	1	GTATGGAAATTA
POU3F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	40	51	+	12.3855	2.72e-05	1	GTATGGAAATTA
POU3F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	40	51	+	12.3855	2.72e-05	1	GTATGGAAATTA
ELK1	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.1915	2.72e-05	0.0642	TCCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.1915	2.72e-05	0.0642	TCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.1915	2.72e-05	0.0642	TCCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.1915	2.72e-05	0.0642	TCCGGAAGCG
RFX5	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	+	9.06897	2.72e-05	0.172	AGTCCCCATGGTGACA
RFX5	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	-	9.06897	2.72e-05	0.172	AGTCCCCATGGTGACA
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	20	33	-	9.91429	2.72e-05	0.131	TGCTGACGTCAGCG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	20	33	-	9.91429	2.72e-05	0.131	TGCTGACGTCAGCG
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	20	33	-	9.91429	2.72e-05	0.131	TGCTGACGTCAGCG
ATF7	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	57	70	-	9.91429	2.72e-05	0.131	GAATGACGTGACCC
ATF7	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	82	95	+	9.91429	2.72e-05	0.131	TGCTGACGTCAGCG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	73	91	-	10.7377	2.72e-05	0.0935	CACCCCCCAGATGGCAGCT
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	73	91	-	10.7377	2.72e-05	0.0935	CACCCCCCAGATGGCAGCT
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	15	28	+	12.0962	2.72e-05	0.0145	CCGCCGCTGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	28	41	+	12.0962	2.72e-05	0.0145	GGCCCGCCTCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	28	41	+	12.0962	2.72e-05	0.0145	GGCCCGCCTCCGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	43	56	-	12.0962	2.72e-05	0.0145	CCTTCTCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	57	70	+	12.0962	2.72e-05	0.0145	CCGCCGCTGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	57	70	+	12.0962	2.72e-05	0.0145	CCGCCGCTGCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	87	100	+	12.0962	2.72e-05	0.0145	CCGCCGCTGCCGCC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	87	100	-	12.0962	2.72e-05	0.0145	CCGCCGCTGCCGCC
HOXA13	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	11	20	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	49	58	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	50	59	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	50	59	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	50	59	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	50	59	+	12.5278	2.72e-05	1	CCTATAAAAA
HOXA13	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	88	97	-	12.5278	2.72e-05	1	CCTATAAAAA
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	76	89	-	12.3226	2.72e-05	0.348	GCTCCTGGAGAGCG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	76	89	-	12.3226	2.72e-05	0.348	GCTCCTGGAGAGCG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	76	89	-	12.3226	2.72e-05	0.348	GCTCCTGGAGAGCG
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	76	89	-	12.3226	2.72e-05	0.348	GCTCCTGGAGAGCG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	76	89	-	12.3226	2.72e-05	0.348	GCTCCTGGAGAGCG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	59	77	+	12.1452	2.73e-05	0.671	TGAACCCGAGTGAATCCCT
RXRA::VDR	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	27	41	-	8.69725	2.73e-05	1	GGGTCAGCCAGTTCA
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	27	41	-	8.69725	2.73e-05	1	GGGTCAGCCAGTTCA
E2F6	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	16	26	-	13	2.73e-05	0.0458	TGGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	67	77	-	13	2.73e-05	0.0458	TGGAGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	67	77	-	13	2.73e-05	0.0458	TGGAGGGAGGC
E2F6	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	89	99	+	13	2.73e-05	0.0458	TGGAGGGAGGC
JUN	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	18	30	-	12.6122	2.73e-05	0.301	GAAATGATGTAAG
JUN	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	85	97	+	12.6122	2.73e-05	0.301	GAAATGATGTAAG
Hoxa11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	20	31	+	12.5161	2.73e-05	1	AATCGTAAAACA
Gmeb1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	30	46	+	11.4211	2.73e-05	0.537	GAGTTGACGTCTGATGT
Gmeb1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	62	78	-	11.4211	2.73e-05	0.537	GAGTTGACGTCTGATGT
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	-	12.4592	2.73e-05	0.0857	TCCCTCCGGGCG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	13	27	-	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	13	27	-	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	13	27	-	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	64	78	-	9.17241	2.73e-05	0.0319	GGCCACCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	64	78	-	9.17241	2.73e-05	0.0319	GGCCACCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	86	100	+	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	86	100	+	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	86	100	+	9.17241	2.73e-05	0.0319	CGCCGCCCACTCCAA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	84	-	12.5636	2.73e-05	0.0548	CCCCCGCCGGCA
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	27	40	+	11.75	2.73e-05	0.446	TGTGCCACGTGACC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	27	40	+	11.75	2.73e-05	0.446	TGTGCCACGTGACC
RREB1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	21	40	-	6.61468	2.73e-05	0.0475	CCCCCACCCCTCCGCCTCCA
RREB1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	75	94	+	6.61468	2.73e-05	0.0475	CCCCCACCCCTCCGCCTCCA
Tcf7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	45	56	-	11.3871	2.73e-05	1	GAAGGTCAAAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	14	24	+	13	2.73e-05	0.0451	TCGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	53	63	+	13	2.73e-05	0.0451	TCGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	53	63	+	13	2.73e-05	0.0451	TCGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	53	63	+	13	2.73e-05	0.0451	TCGCGGGAGCG
ERF	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.6	2.73e-05	0.0852	AGCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.6	2.73e-05	0.0852	AGCGGAAGTG
ZIC1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	32	45	-	9	2.73e-05	0.0959	GGCCACCCGCAGGT
ZIC1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	70	83	+	9	2.73e-05	0.0959	GGCCACCCGCAGGT
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	90	105	+	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	90	105	+	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	90	105	+	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	90	105	+	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	90	105	+	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
GLIS1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	10	25	-	-4.71154	2.73e-05	0.317	AGACCGTCCGCGGAGG
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	+	6.56897	2.73e-05	0.189	TGGCACTTGTCA
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	+	6.56897	2.73e-05	0.189	TGGCACTTGTCA
NR2F1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	101	113	-	12.8571	2.73e-05	0.367	CGGGGGTCACCTG
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	67	87	-	7.55102	2.73e-05	0.208	ATCAGCACAACAGCCACAGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	67	87	-	7.55102	2.73e-05	0.208	ATCAGCACAACAGCCACAGCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	37	57	+	7.55102	2.73e-05	0.208	ATCAGCACAACAGCCACAGCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	37	57	+	7.55102	2.73e-05	0.208	ATCAGCACAACAGCCACAGCC
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	22	39	-	7.65517	2.73e-05	0.182	AGAACACACCCCTCCTAC
JUND	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	+	12.8085	2.73e-05	0.173	GCTGAGTCATT
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	-	8.26531	2.73e-05	0.991	GGGTACAGCATGTCACA
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	-	8.26531	2.73e-05	0.991	GGGTACAGCATGTCACA
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	+	8.26531	2.73e-05	0.991	GGGTACAGCATGTCACA
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	+	8.26531	2.73e-05	0.991	GGGTACAGCATGTCACA
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	18	28	-	12.4655	2.73e-05	0.215	CGCTGTGGGTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	18	28	-	12.4655	2.73e-05	0.215	CGCTGTGGGTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	43	53	+	12.4655	2.73e-05	0.215	CGCTGTGGGTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	43	53	+	12.4655	2.73e-05	0.215	CGCTGTGGGTT
RUNX1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	46	56	+	12.4655	2.73e-05	0.215	AGCTGTGGTTA
GCM1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	72	82	-	12.4694	2.73e-05	0.531	CCTGCGGGTGG
GCM1	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	104	114	-	12.4694	2.73e-05	0.531	CCTGCGGGTGG
GCM1	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	1	11	+	12.4694	2.73e-05	0.531	CCTGCGGGTGG
GCM1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	33	43	+	12.4694	2.73e-05	0.531	CCTGCGGGTGG
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	-	8.62857	2.73e-05	0.17	CATTGTCACGGTAACC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	-	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	-	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	-	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	-	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	+	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	+	12.8	2.73e-05	0.0489	CGCCGCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	+	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	+	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	+	12.8	2.73e-05	0.0489	CGCCTGAGGGA
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	+	12.8	2.73e-05	0.0489	CGCCGCCGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	49	-	11.3857	2.73e-05	0.102	GGGTGACAAAGGTCA
NR2C2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	66	80	+	11.3857	2.73e-05	0.102	GGGTGACAAAGGTCA
USF2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	27	37	-	13.0612	2.73e-05	0.0904	GTCACGTGAGC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	+	12.1897	2.73e-05	0.0554	AGCCCCGTGGGCC
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	+	12.1897	2.73e-05	0.0554	ACCCCGGCGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	-	12.1897	2.73e-05	0.0554	ACCCCGGCGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	-	12.1897	2.73e-05	0.0554	ACCCCGGCGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	-	12.1897	2.73e-05	0.0554	ACCCCGGCGGGGA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	-	12.1897	2.73e-05	0.0554	AGCCCCGTGGGCC
NRF1	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	10	20	+	12.0909	2.73e-05	0.0126	CCGCGCGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	18	28	+	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	26	36	+	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	26	36	+	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	59	69	+	12.0909	2.73e-05	0.0126	CCGCGCGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	46	56	-	12.0909	2.73e-05	0.0126	CCGCGCGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	79	89	-	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	87	97	-	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	87	97	-	12.0909	2.73e-05	0.0126	ACGCAGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	95	105	-	12.0909	2.73e-05	0.0126	CCGCGCGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	100	110	-	12.0909	2.73e-05	0.0126	CCGCGCGCGCA
JUNB	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	104	114	+	13.2857	2.73e-05	0.154	GCATGACTCAG
JUNB	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	1	11	-	13.2857	2.73e-05	0.154	GCATGACTCAG
FOXC2	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	16	27	-	12.5149	2.73e-05	1	TGTGTAAATAAA
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	38	49	-	12.4828	2.74e-05	0.365	GAGACCCCCGCA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	23	38	-	11.8909	2.74e-05	0.0374	CCACCCCCACGGACCT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	15	35	-	11.3673	2.74e-05	0.0116	GGAGGGAGGGAGCGAGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	17	37	-	11.3673	2.74e-05	0.0116	GGAGGAGAGCTACCGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	41	61	-	11.3673	2.74e-05	0.0116	GGAGGAAAAAATCGCGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	41	61	-	11.3673	2.74e-05	0.0116	GGAGGAAAAAATCGCGGGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	77	97	-	11.3673	2.74e-05	0.0116	TGAGAAGCACTGTGGGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	84	104	-	11.3673	2.74e-05	0.0116	GGAGGAGCGCGGCTCGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	8	28	+	11.3673	2.74e-05	0.0116	GAGAGAGCAAGCGGCGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	8	28	+	11.3673	2.74e-05	0.0116	GAGAGAGCAAGCGGCGGAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	11	31	+	11.3673	2.74e-05	0.0116	GGAGGAGCGCGGCTCGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	12	32	+	11.3673	2.74e-05	0.0116	GGGAGGGGAGAGGGAGGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	21	41	+	11.3673	2.74e-05	0.0116	GGGGCAACAGTGGGAGAGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	54	74	+	11.3673	2.74e-05	0.0116	GGAGGAAAAAATCGCGGGGGA
Foxa2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	9	20	+	12.8	2.74e-05	0.884	TGTTGACTGTGG
Foxa2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	9	20	+	12.8	2.74e-05	0.884	TGTTGACTGTGG
RREB1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	22	41	-	6.6055	2.74e-05	0.0475	CCCCACCCCCACCAGCACGC
RREB1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	95	114	-	6.6055	2.74e-05	0.0475	CCCCACCCCCACCAGCACGC
RREB1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	1	20	+	6.6055	2.74e-05	0.0475	CCCCACCCCCACCAGCACGC
RREB1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	74	93	+	6.6055	2.74e-05	0.0475	CCCCACCCCCACCAGCACGC
KLF16	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	81	91	+	12.2241	2.74e-05	0.0129	CACACGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	24	34	-	12.2241	2.74e-05	0.0129	CACACGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	24	34	-	12.2241	2.74e-05	0.0129	CACACGCCTCC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	12	26	+	10.6557	2.74e-05	0.0439	GCCCCCGCCCTCATC
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	88	104	+	12.4868	2.74e-05	1	CGGCCGCTGTTTTGAAA
Rhox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	88	104	+	12.4868	2.74e-05	1	CGGCCGCTGTTTTGAAA
NFKB1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	98	110	-	5.59184	2.74e-05	0.233	GGGGGAATCACAT
NFKB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	5	17	+	5.59184	2.74e-05	0.233	GGGGGAATCACAT
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	5	17	+	5.59184	2.74e-05	0.233	GGGGGAATCACAT
HEY1	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	12.9091	2.74e-05	0.103	CACACGTGCA
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	12.9091	2.74e-05	0.103	CACACGTGCA
HEY1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	12.9091	2.74e-05	0.103	CACACGTGCA
SP1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	18	28	-	12.6923	2.74e-05	0.00927	CTCCCGCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	38	48	+	12.6923	2.74e-05	0.00927	TCCCCTCCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	56	66	-	12.6923	2.74e-05	0.00927	TCCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	70	80	+	12.6923	2.74e-05	0.00927	CTCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	70	80	+	12.6923	2.74e-05	0.00927	CTCCCGCCCCA
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	68	78	-	12.6923	2.74e-05	0.00927	GTTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	80	90	-	12.6923	2.74e-05	0.00927	GCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	80	90	-	12.6923	2.74e-05	0.00927	GCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	80	90	-	12.6923	2.74e-05	0.00927	GCTCCTCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	80	90	-	12.6923	2.74e-05	0.00927	GCTCCTCCTCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	91	108	+	-10.1579	2.74e-05	0.0328	GGAGGGCGGGAAGAAGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	46	59	-	8.32653	2.74e-05	0.0647	GGGGGGCTCGCGGG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	+	9.22449	2.74e-05	0.208	TGTGACTCACC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	-	9.22449	2.74e-05	0.208	TGTGACTCACC
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	17	30	+	9.9	2.74e-05	0.131	CGCTGACGTCAGAG
ATF7	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	17	30	-	9.9	2.74e-05	0.131	CGCTTACGTCATGA
ATF7	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	40	53	-	9.9	2.74e-05	0.131	CGCTTACGTCATGA
ATF7	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	62	75	+	9.9	2.74e-05	0.131	CGCTTACGTCATGA
ATF7	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	85	98	+	9.9	2.74e-05	0.131	CGCTTACGTCATGA
ALX3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.8911	2.74e-05	1	CCCAATTAAA
ALX3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.8911	2.74e-05	1	CCCAATTAAA
ALX3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.8911	2.74e-05	1	CCCAATTAAA
HES7	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	-	6.55172	2.74e-05	0.189	TGACACATGCCT
HES7	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	+	6.55172	2.74e-05	0.189	TGACACATGCCT
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	+	12.2951	2.74e-05	0.064	GCCCCGCCGGGCA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	-	12.2951	2.74e-05	0.064	GCCCCGCCGGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	+	12.2951	2.74e-05	0.064	CGCCTCGCGGGCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	13	22	+	12.3028	2.74e-05	0.0452	CCCCCCCCGT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	13	22	+	12.3028	2.74e-05	0.0452	CCCCCCCCGT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	58	67	+	12.3028	2.74e-05	0.0452	CCCCCCCCGT
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	93	102	-	12.3028	2.74e-05	0.0452	CCCCCCCCGT
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	37	55	+	10.7213	2.74e-05	0.0935	GAGCCGCCGGAGGGCAGCT
CTCF	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	58	76	+	10.7213	2.74e-05	0.0935	AAGTCAGTGGGGGGCAGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	51	65	+	12.2241	2.74e-05	0.00819	CTCCCGCCCAGGCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	51	65	+	12.2241	2.74e-05	0.00819	CTCCCGCCCAGGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	51	65	+	12.2241	2.74e-05	0.00819	CTCCCGCCCAGGCCG
SP2	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	87	+	12.2241	2.74e-05	0.00819	GCACCACCCCCTCCA
SP2	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	28	42	-	12.2241	2.74e-05	0.00819	GCACCACCCCCTCCA
SP2	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	61	75	-	12.2241	2.74e-05	0.00819	TCCCCGCTCCTCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	23	33	+	12.0727	2.75e-05	0.0126	ACGGGTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	82	92	-	12.0727	2.75e-05	0.0126	ACGGGTGCGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.6727	2.75e-05	0.102	GCCGGAAGCG
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	23	37	-	10.8852	2.75e-05	0.325	GTGACTCATCCCTTT
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	63	77	-	10.8852	2.75e-05	0.325	GTGACTCATCCCTTT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	78	92	-	10.8852	2.75e-05	0.325	GTGACTCAGGACCAG
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	38	52	+	10.8852	2.75e-05	0.325	GTGACTCATCCCTTT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	62	76	+	10.8852	2.75e-05	0.325	GTGACTCAGGACCAG
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	78	92	+	10.8852	2.75e-05	0.325	GTGACTCATCCCTTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	29	42	-	11.0517	2.75e-05	0.0251	AGCCCCGCCTCCAT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	29	42	-	11.0517	2.75e-05	0.0251	AGCCCCGCCTCCAT
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	18	28	-	12.8727	2.75e-05	0.721	AACCTCTCAGC
ATF4	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	69	81	-	11.8361	2.75e-05	0.506	ACATGATGAAATC
ATF4	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	34	46	+	11.8361	2.75e-05	0.506	ACATGATGAAATC
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	24	34	-	12.8367	2.75e-05	0.767	ATTGCATCACT
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	24	34	-	12.8367	2.75e-05	0.767	ATTGCATCACT
TBP	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	48	62	+	12.1111	2.75e-05	0.402	GTATAAATAGGTCAG
TBP	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	53	67	-	12.1111	2.75e-05	0.402	GTATAAATAGGTCAG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	50	61	+	12.4091	2.75e-05	0.109	GAACGTCCGGGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	50	61	+	12.4091	2.75e-05	0.109	GAACGTCCGGGG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	48	56	+	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	48	56	+	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	93	101	+	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	14	22	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	30	38	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	30	38	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	30	38	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	30	38	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	30	38	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	59	67	-	13.2182	2.75e-05	0.288	GCGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	90	98	-	13.2182	2.75e-05	0.288	GCGCACCTG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	51	65	-	11.3714	2.75e-05	0.102	GTGGGGGAAGGGGCA
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	43	56	-	8.97872	2.75e-05	0.0959	TCCTCCCCGCTGCT
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	13	26	+	8.97872	2.75e-05	0.0959	TCCTCCCCGCTGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	28	41	+	12.0769	2.75e-05	0.0146	GGGTCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	28	41	+	12.0769	2.75e-05	0.0146	GGGTCGCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	34	47	+	12.0769	2.75e-05	0.0146	CCCACGCCTCCGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	34	47	+	12.0769	2.75e-05	0.0146	CCCACGCCTCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	71	84	-	12.0769	2.75e-05	0.0146	CTTCCGCCCACTGT
SPI1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	29	42	-	6.21818	2.75e-05	0.141	CATATGGGGAAGTC
SPI1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	53	66	+	6.21818	2.75e-05	0.141	CATATGGGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	49	62	-	6.21818	2.75e-05	0.141	CATATGGGGAAGTC
SPI1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	73	86	+	6.21818	2.75e-05	0.141	CATATGGGGAAGTC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	36	53	+	-10.1711	2.75e-05	0.0328	GAGACAAGGGGAGGAAGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	41	58	+	-10.1711	2.75e-05	0.0328	GGGAGGAGGGGGGAAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	76	93	-	-10.1711	2.75e-05	0.0328	GGAAAGAAAGGAGCAGAT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	76	93	-	-10.1711	2.75e-05	0.0328	GGAAAGAAAGGAGCAGAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	76	93	-	-10.1711	2.75e-05	0.0328	GGAAAGAAAGGAGCAGAT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	76	93	-	-10.1711	2.75e-05	0.0328	GGAAAGAAAGGAGCAGAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	76	93	-	-10.1711	2.75e-05	0.0328	GGAAAGAAAGGAGCAGAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	76	89	+	12.9423	2.75e-05	0.182	CCGCGGTGACTCAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	11.6364	2.75e-05	0.2	ATCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	11.6364	2.75e-05	0.2	ATCACGTGGC
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	11.6364	2.75e-05	0.2	ATCACGTGGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	14	25	+	9.59184	2.75e-05	0.109	AGTGACGTCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	14	25	+	9.59184	2.75e-05	0.109	AGTGACGTCAGA
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	95	106	+	9.59184	2.75e-05	0.109	AGTGACGTCAGA
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	20	-	9.59184	2.75e-05	0.109	AGTGACGTCAGA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	101	-	9.59184	2.75e-05	0.109	AGTGACGTCAGA
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	11	30	-	6.58716	2.75e-05	0.0475	CCACACCCCGTCCCACCCCC
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	41	55	+	12.3077	2.75e-05	0.335	TTAGCACAAAGGTCA
HNF4G	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	41	55	+	12.3077	2.75e-05	0.335	TTAGCACAAAGGTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	61	-	12.3077	2.75e-05	0.335	CCGGAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	61	-	12.3077	2.75e-05	0.335	CCGGAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	61	-	12.3077	2.75e-05	0.335	CCGGAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	61	-	12.3077	2.75e-05	0.335	CCGGAGCAAAGGTCG
SP3	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	2	12	-	12.3333	2.75e-05	0.0154	GCAACACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	99	109	-	12.3333	2.75e-05	0.0154	ACCACACCCCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	62	72	+	12.4	2.75e-05	0.118	TACCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	62	72	+	12.4	2.75e-05	0.118	TACCGGAAGTT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	72	86	+	10.3857	2.75e-05	0.101	GAAGCCCCGCAGTGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	72	86	+	10.3857	2.75e-05	0.101	GAAGCCCCGCAGTGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	71	83	+	12.4098	2.75e-05	0.359	CAGCCTGTCACTT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	71	83	+	12.4098	2.75e-05	0.359	CAGCCTGTCACTT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	2	11	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	2	11	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	9	18	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	13	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	14	23	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	6	15	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	16	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	16	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	17	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	9	18	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	10	19	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	19	28	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	12	21	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	23	32	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	26	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	26	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	20	29	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	20	29	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	32	41	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	32	41	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	32	41	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	32	41	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	33	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	34	43	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	25	34	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	35	44	+	12.4082	2.76e-05	0.0141	TGGGTGTGGA
Klf4	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	36	45	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	28	37	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	28	37	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	37	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	37	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	37	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	38	47	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	40	49	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	32	41	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	32	41	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	32	41	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	32	41	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	32	41	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	33	42	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	33	42	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	33	42	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	33	42	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	33	42	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	43	52	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	43	52	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	43	52	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	43	52	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	43	52	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	34	43	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	34	43	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	36	45	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	36	45	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	45	54	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	45	54	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	37	46	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	37	46	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	47	56	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	48	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	39	48	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	48	57	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	48	57	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	48	57	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	48	57	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	52	61	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	52	61	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	52	61	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	52	61	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	64	73	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	58	67	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	67	76	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	68	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	70	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	72	81	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	74	83	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	66	75	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	77	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	78	87	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	70	79	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	82	91	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	85	94	-	12.4082	2.76e-05	0.0141	TGGGTGTGGA
Klf4	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	94	103	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	86	95	-	12.4082	2.76e-05	0.0141	TGGGTGTGGA
Klf4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	96	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	100	109	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	102	111	+	12.4082	2.76e-05	0.0141	GGGGCGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	106	-	12.4082	2.76e-05	0.0141	GGGGCGGGGA
XBP1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	56	69	+	11.7308	2.76e-05	0.446	GGGGTCACGTCATT
LEF1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	83	97	-	10.8871	2.76e-05	1	GGACATCAAAGTTGA
ELF1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	72	-	11.4727	2.76e-05	0.0932	ATGCCGGAAGCG
ELF1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	84	95	+	11.4727	2.76e-05	0.0932	TATCCGGAAGCA
IRF9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	80	94	-	1.27273	2.76e-05	0.506	CTCGAGACTGAAACT
IRF9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	80	94	-	1.27273	2.76e-05	0.506	CTCGAGACTGAAACT
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	80	89	-	12.9672	2.76e-05	0.237	TATGACGTCT
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	80	89	-	12.9672	2.76e-05	0.237	TATGACGTCT
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	80	89	-	12.9672	2.76e-05	0.237	TATGACGTCT
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	80	89	-	12.9672	2.76e-05	0.237	TATGACGTCT
JUND	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	-	12.7872	2.76e-05	0.173	AGTGACTCACA
JUND	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	-	12.7872	2.76e-05	0.173	AGTGACTCACA
Bcl6	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	45	58	+	12.3065	2.76e-05	0.348	ATTCCTGGAGAAAC
Bcl6	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	57	70	-	12.3065	2.76e-05	0.348	ATTCCTGGAGAAAC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	13.25	2.76e-05	0.233	ATCACGTGCA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	-	12.5273	2.76e-05	0.0893	TGCCCTCCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	-	12.2295	2.76e-05	0.056	CGCCCCCCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	-	12.2295	2.76e-05	0.056	CGCCCCCCCGGCA
Klf12	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	18	32	-	10.6393	2.76e-05	0.044	GACCCCGCCCCGGCC
Klf12	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	83	97	+	10.6393	2.76e-05	0.044	GACCCCGCCCCGGCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	21	35	-	12.1622	2.76e-05	0.149	GGGGAGGAGAGGGGA
ELF3	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	85	97	+	10.6724	2.76e-05	0.126	ATCCCGGAAGGAG
CREB3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	5	18	-	11.6857	2.76e-05	0.207	TCTCCACGTAATCG
CREB3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	97	110	+	11.6857	2.76e-05	0.207	TCTCCACGTAATCG
RFX5	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	44	59	+	9.03448	2.76e-05	0.172	TGGAACTATGGCAACG
RFX5	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	56	71	-	9.03448	2.76e-05	0.172	TGGAACTATGGCAACG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	16	30	-	9.13793	2.76e-05	0.0322	GGCCGCCCGCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	16	30	-	9.13793	2.76e-05	0.0322	GGCCGCCCGCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	50	64	-	9.13793	2.76e-05	0.0322	CTCCGCCTCCTCACG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	6	16	+	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	6	16	+	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	9	19	+	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	9	19	+	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	12	22	+	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	12	22	+	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	12	22	+	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	12	22	+	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	61	71	+	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	69	79	+	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	36	46	-	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	36	46	-	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	60	70	-	12.0545	2.76e-05	0.0126	GCGGCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	104	114	-	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	104	114	-	12.0545	2.76e-05	0.0126	GCCCCGGCGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	2	12	+	12.6885	2.76e-05	0.0441	CAGGAAGTGCG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	9	19	+	12.6885	2.76e-05	0.0441	CAGGAAGTGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	79	89	-	12.6885	2.76e-05	0.0441	CAGGAAGTGCG
ESR2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	32	46	-	12.25	2.76e-05	0.426	GGGTCACGTGGCCAC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	47	61	+	12.25	2.76e-05	0.426	GGGTCACGTGGCCAC
MSC	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	+	12.1341	2.76e-05	0.569	GGCAGCTGTT
MSC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	-	12.1341	2.76e-05	0.569	GGCAGCTGTT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	47	64	-	-10.1842	2.76e-05	0.0328	GAGAAGGAGGAGGGCAAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	73	90	-	-10.1842	2.76e-05	0.0328	AGAAGGAAGTCACGAAGC
ELK4	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	37	47	+	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	37	-	12.7636	2.76e-05	0.0454	CGACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	43	53	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	43	53	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	68	78	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	68	78	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	68	78	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	68	78	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	78	88	+	12.7636	2.76e-05	0.0454	CGACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	71	81	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	71	81	-	12.7636	2.76e-05	0.0454	TCACTTCCTGG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	95	-	12.7636	2.76e-05	0.0454	CGACTTCCTGT
NHLH1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	62	71	-	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	65	74	-	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	85	94	+	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	85	94	+	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	85	94	+	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	85	94	+	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	82	91	-	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	82	91	-	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	83	92	-	12.569	2.76e-05	0.109	TGCAGCTGCT
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	98	107	-	12.569	2.76e-05	0.109	TGCAGCTGCT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	-	13.1091	2.76e-05	0.16	GCTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	-	13.1091	2.76e-05	0.16	GCTGAGTCAGC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	14	23	-	12.8361	2.76e-05	0.183	AATCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	14	23	-	12.8361	2.76e-05	0.183	AATCACGTGA
Arntl	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	31	40	-	12.8361	2.76e-05	0.183	AATCACGTGA
Arntl	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	75	84	+	12.8361	2.76e-05	0.183	AATCACGTGA
FOS	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	-	13.2128	2.76e-05	0.2	GATGACTCACT
FOS	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	+	13.2128	2.76e-05	0.2	GATGACTCACT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	38	51	-	10.459	2.76e-05	0.176	CGCCCCCTGCGGGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	38	51	-	10.459	2.76e-05	0.176	CGCCCCCTGCGGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	38	53	+	11.8727	2.76e-05	0.0374	CTCCGCCCGCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	38	53	+	11.8727	2.76e-05	0.0374	CTCCGCCCGCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	38	53	+	11.8727	2.76e-05	0.0374	CTCCGCCCGCCCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	38	53	+	11.8727	2.76e-05	0.0374	CTCCGCCCGCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	25	40	-	11.8727	2.76e-05	0.0374	CCCCGCCTCCGCACCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	25	40	-	11.8727	2.76e-05	0.0374	CCCCGCCTCCGCACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	25	40	-	11.8727	2.76e-05	0.0374	CCCCGCCTCCGCACCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	25	40	-	11.8727	2.76e-05	0.0374	CCCCGCCTCCGCACCG
EGR4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	75	90	+	11.8727	2.76e-05	0.0374	CCCCGCCTCCGCACCG
EGR4	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	78	93	+	11.8727	2.76e-05	0.0374	CCGCGCCCCCGCAGCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	27	37	+	12.6731	2.76e-05	0.00933	GGCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	27	37	+	12.6731	2.76e-05	0.00933	GGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	27	37	+	12.6731	2.76e-05	0.00933	GGCCCGCCCCA
SP1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	25	35	-	12.6731	2.76e-05	0.00933	GGCCCGCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	61	71	+	12.6731	2.76e-05	0.00933	TCTCCGCCCAC
ETS1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ELK3	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.7931	2.76e-05	0.0853	ACCGGAAGGA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
ETS1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.7586	2.76e-05	0.0768	GCCGGAAGTT
PITX3	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	81	89	-	11.7308	2.76e-05	1	TCTAATCCC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	3	17	+	12.0727	2.76e-05	0.276	TAAAGGAGAAAGGAA
PRDM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	92	106	+	12.0727	2.76e-05	0.276	AGAGAGGAAAAGTGT
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	92	106	+	12.0727	2.76e-05	0.276	AGAGAGGAAAAGTGT
PRDM1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	9	23	-	12.0727	2.76e-05	0.276	AGAGAGGAAAAGTGT
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	33	51	-	10.7049	2.77e-05	0.0935	TTCCCGGAAGGGGTCAGCC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	33	51	-	10.7049	2.77e-05	0.0935	TTCCCGGAAGGGGTCAGCC
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	33	51	-	10.7049	2.77e-05	0.0935	TTCCCGGAAGGGGTCAGCC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	33	51	-	10.7049	2.77e-05	0.0935	TTCCCGGAAGGGGTCAGCC
EBF1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	77	90	-	11.3115	2.77e-05	0.365	ACTCCCAAGGGCTC
EBF1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	25	38	+	11.3115	2.77e-05	0.365	ACTCCCAAGGGCTC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	42	55	+	11.3115	2.77e-05	0.365	GCTCCCCAGGGCCT
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	56	66	-	13.3469	2.77e-05	0.123	GGCAGCTGGTT
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	56	66	-	13.3469	2.77e-05	0.123	GGCAGCTGGTT
TFEC	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	7	16	-	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	26	35	-	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	75	84	-	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	28	37	+	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	31	40	+	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	46	55	+	12.4512	2.77e-05	0.129	GTCACATGAG
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	46	55	+	12.4512	2.77e-05	0.129	GTCACATGAG
NFYB	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	49	63	-	12.5385	2.77e-05	0.105	AAGCCGACCAATGGC
NFYB	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	68	82	+	12.5385	2.77e-05	0.105	AAGCCGACCAATGGC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	22	37	+	-4.76923	2.77e-05	0.317	GGACCCCCCACCCCGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	83	98	+	-4.76923	2.77e-05	0.317	TCACCCTCCTCGTTGG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	83	98	+	-4.76923	2.77e-05	0.317	TCACCCTCCTCGTTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	58	78	-	11.3469	2.77e-05	0.0117	GAGGGAAGGGAAGGCGGGGCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	16	36	+	11.3469	2.77e-05	0.0117	AGTTGAGGCTGGGGGTGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	20	40	+	11.3469	2.77e-05	0.0117	GAGGGAAGGGAAGGCGGGGCC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	36	56	+	11.3469	2.77e-05	0.0117	TGATGTGGAGGGAGCGGAGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	37	57	+	11.3469	2.77e-05	0.0117	GAGGGAAGGGAAGGCGGGGCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	23	36	-	11.0345	2.77e-05	0.0251	CGCCCCGCCCTCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	25	38	-	11.0345	2.77e-05	0.0251	GAACACACCCCTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	25	38	-	11.0345	2.77e-05	0.0251	GAACACACCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	25	38	-	11.0345	2.77e-05	0.0251	GAACACACCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	32	45	-	11.0345	2.77e-05	0.0251	GGCCGCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	32	45	-	11.0345	2.77e-05	0.0251	GGCCGCGCCTCCTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	35	48	-	11.0345	2.77e-05	0.0251	CGCCCCGCCCTCTC
KLF14	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	55	68	-	11.0345	2.77e-05	0.0251	GGCCGCGCCTCCTG
KLF14	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	79	92	+	11.0345	2.77e-05	0.0251	CGCCCCGCCCTCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	79	89	+	12.3252	2.77e-05	0.0154	CACACGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	79	89	+	12.3252	2.77e-05	0.0154	CACACGCCCCA
E2F8	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	71	82	+	7.35366	2.77e-05	0.631	TTTCCCGCCAGT
ESR1	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	2	18	-	3.42424	2.77e-05	0.424	GCGGTCACGAGGCCCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	25	39	-	12.0758	2.77e-05	0.0802	TGCTCGCGCGCGCTC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	25	39	-	12.0758	2.77e-05	0.0802	TGCTCGCGCGCGCTC
FOXA1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	80	94	+	12.898	2.77e-05	0.743	ACACTGTTTACATTC
FOXA1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	80	94	+	12.898	2.77e-05	0.743	ACACTGTTTACATTC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	45	57	-	10.7879	2.77e-05	0.231	AGGGGCAGTCCCA
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	27	37	-	12.2069	2.77e-05	0.0129	AACACACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	27	37	-	12.2069	2.77e-05	0.0129	AACACACCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	27	37	-	12.2069	2.77e-05	0.0129	AACACACCCCT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	11	31	-	11.0806	2.77e-05	0.154	CACAACTTTTTTTTTTACTTC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	11	31	-	11.0806	2.77e-05	0.154	CACAACTTTTTTTTTTACTTC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	100	114	-	10.3714	2.77e-05	0.101	GGCCACCTGCCGCTG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	100	114	-	10.3714	2.77e-05	0.101	GGCCACCTGCCGCTG
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	44	54	+	13.0204	2.77e-05	0.262	CTTTCTAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	44	54	+	13.0204	2.77e-05	0.262	CTTTCTAAGAA
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	-	12.7119	2.77e-05	1	CGTGACGTAACA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	34	+	12.2069	2.77e-05	0.00826	TCCCCTCCCCCCATT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	34	+	12.2069	2.77e-05	0.00826	TCCCCTCCCCCCATT
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	41	55	-	12.2069	2.77e-05	0.00826	CTCCCGCCTTAGCCC
RORA	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	54	63	-	13.1236	2.77e-05	0.864	AAATAGGTCA
RORA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	52	61	+	13.1236	2.77e-05	0.864	AAATAGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	52	61	+	13.1236	2.77e-05	0.864	AAATAGGTCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	58	68	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	58	68	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	61	71	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	61	71	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	61	71	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	61	71	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	61	71	-	11.431	2.77e-05	0.0681	ACGCCTGCGCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	-	12.2787	2.77e-05	0.064	AGCCCGGGAGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	+	12.2787	2.77e-05	0.064	AGCCCGGGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	107	-	12.2787	2.77e-05	0.064	GCCCCCAAGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	107	-	12.2787	2.77e-05	0.064	GCCCCCAAGGGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	2	19	+	-10.1974	2.77e-05	0.0328	GGGAGGAGGGAGGCGGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	2	19	+	-10.1974	2.77e-05	0.0328	GGGAGGAGGGAGGCGGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	73	90	+	-10.1974	2.77e-05	0.0328	GGAGGACAGCAAGGTGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	73	90	+	-10.1974	2.77e-05	0.0328	GGAGGACAGCAAGGTGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	73	90	+	-10.1974	2.77e-05	0.0328	GGAGGACAGCAAGGTGGC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	87	104	+	-10.1974	2.77e-05	0.0328	GGGAGGAGGGAGGCGGGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	11	28	-	-10.1974	2.77e-05	0.0328	GGGAGGAGGGAGGCGGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	96	113	-	-10.1974	2.77e-05	0.0328	GGGAGGAGGGAGGCGGGG
HEY2	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	+	12.2414	2.77e-05	0.16	GTCACGTGTA
PAX5	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	13	31	-	12.0806	2.77e-05	0.137	GGGGGCCGCAGGCCGAGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	+	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	+	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	+	12.5455	2.77e-05	0.0548	CGCCCGACGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	+	12.5455	2.77e-05	0.0548	CGCCCGACGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	-	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	15	-	12.5455	2.77e-05	0.0548	TGGCCTCGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	15	-	12.5455	2.77e-05	0.0548	TGGCCTCGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	-	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	-	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	-	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	-	12.5455	2.77e-05	0.0548	ACCCCGGGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	-	12.5455	2.77e-05	0.0548	CGCCCGACGGCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	14	30	-	6.96364	2.77e-05	0.0195	CAAACCCCTCCTCCACT
POU4F1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	35	48	+	12.2283	2.77e-05	1	TTGCATAAATAAAG
BCL6B	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	23	39	+	-11.7286	2.77e-05	0.94	TGCTTCCTGGGTATCCA
Nr2e1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	19	27	+	12.7097	2.77e-05	1	CAAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	19	27	+	12.7097	2.77e-05	1	CAAAGTCAA
Nr2e1	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	22	30	-	12.7097	2.77e-05	1	CAAAGTCAA
Nr2e1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	56	64	-	12.7097	2.77e-05	1	CAAAGTCAA
Nr2e1	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	85	93	+	12.7097	2.77e-05	1	CAAAGTCAA
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	24	38	-	10.623	2.78e-05	0.044	GAACACACCCCTCCT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	24	38	-	10.623	2.78e-05	0.044	GAACACACCCCTCCT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	24	38	-	10.623	2.78e-05	0.044	GAACACACCCCTCCT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	51	65	-	10.623	2.78e-05	0.044	CGCCCCGCCCATCAC
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	89	-	11.4364	2.78e-05	0.0932	TGGCCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	89	-	11.4364	2.78e-05	0.0932	TGGCCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	26	37	+	11.4364	2.78e-05	0.0932	TGGCCGGAAGTG
EGR3	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	30	44	+	9.12069	2.78e-05	0.0323	CAACACCCAGGCATT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	73	83	+	12.7273	2.78e-05	0.269	GGCCGCCATTC
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	73	83	+	12.7273	2.78e-05	0.269	GGCCGCCATTC
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	93	103	-	12.7273	2.78e-05	0.269	AGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	93	103	-	12.7273	2.78e-05	0.269	AGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	93	103	-	12.7273	2.78e-05	0.269	AGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	93	103	-	12.7273	2.78e-05	0.269	AGCCGCCATGA
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	93	103	-	12.7273	2.78e-05	0.269	AGCCGCCATGA
ETV5	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.1091	2.78e-05	0.0782	TCCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.1091	2.78e-05	0.0782	TCCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.1091	2.78e-05	0.0782	TCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.1091	2.78e-05	0.0782	TCCGGAAGCG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	2	11	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	4	13	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	4	13	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	19	28	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	21	30	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	18	27	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	18	27	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	33	42	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	33	42	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	28	37	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	38	47	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	52	61	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	63	72	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	63	72	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	64	73	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	73	82	+	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	64	73	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	80	89	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	101	110	-	12.0101	2.78e-05	0.164	GGAGGGGAAG
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	34	44	+	12.6538	2.78e-05	0.00936	ACCCCGCCCTT
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	57	67	+	12.6538	2.78e-05	0.00936	ACCCCGCCCTT
SP1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	48	58	-	12.6538	2.78e-05	0.00936	ACCCCGCCCTT
SP1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	71	81	-	12.6538	2.78e-05	0.00936	ACCCCGCCCTT
IRF7	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	56	69	+	10.871	2.78e-05	0.623	ATGAAATTGAAAAT
CEBPG	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	-	11.7755	2.78e-05	0.597	ATTACGTAAT
CEBPG	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	+	11.7755	2.78e-05	0.597	ATTACGTAAT
GRHL1	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	55	66	+	12.3103	2.78e-05	1	AAAACCGGTCGG
GRHL1	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	52	63	-	12.3103	2.78e-05	1	AAAACCGGTCGG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	+	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	+	12.7273	2.78e-05	0.063	AGCCGGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	+	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	+	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	+	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	-	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	-	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	-	12.7273	2.78e-05	0.063	AGCCGGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	-	12.7273	2.78e-05	0.063	CGCCTGAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	-	12.7273	2.78e-05	0.063	CGCCTGAGGGA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	63	77	-	9.84211	2.78e-05	0.182	GGCCTGAGGAAGCAG
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	22	36	+	11.5758	2.78e-05	0.266	TTTCTTTCGTTTTCA
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	93	107	+	11.5758	2.78e-05	0.266	TTTCTTTCGTTTTCA
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	8	22	-	11.5758	2.78e-05	0.266	TTTCTTTCGTTTTCA
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	79	93	-	11.5758	2.78e-05	0.266	TTTCTTTCGTTTTCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	3	12	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	3	12	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	3	12	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	4	13	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	20	29	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	20	29	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	25	34	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	25	34	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	35	44	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	35	44	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	37	46	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	51	60	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	51	60	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	53	62	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	56	65	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	63	72	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	63	72	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	77	86	-	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	78	87	-	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	11	20	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	11	20	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	37	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	37	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	29	38	+	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	51	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	59	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	53	62	+	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	64	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	64	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	58	67	+	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	58	67	+	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	69	78	+	13.0204	2.78e-05	0.0132	GTCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	111	+	13.0204	2.78e-05	0.0132	GCTCCGCCCA
GSC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	38	47	+	11.5085	2.78e-05	1	TTTAATCCGC
GSC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	38	47	+	11.5085	2.78e-05	1	TTTAATCCGC
GSC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	38	47	+	11.5085	2.78e-05	1	TTTAATCCGC
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	61	74	-	6.18182	2.78e-05	0.141	GTAATGCGGAAGAA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	61	74	-	6.18182	2.78e-05	0.141	GTAATGCGGAAGAA
EGR1	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	35	+	12.0577	2.78e-05	0.0147	ACCACGCCCACTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	34	47	+	12.0577	2.78e-05	0.0147	GCCCTGCCTCCACC
EGR1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	31	44	-	12.0577	2.78e-05	0.0147	CTGCCGCCCACTGT
EGR1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	31	44	-	12.0577	2.78e-05	0.0147	ACCACGCCCACTCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	66	79	+	12.0577	2.78e-05	0.0147	GTCCCTCCTCCTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	66	79	+	12.0577	2.78e-05	0.0147	GTCCCTCCTCCTCT
EGR1	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	69	82	+	12.0577	2.78e-05	0.0147	GCCACGCCCCCAGT
EGR1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	84	+	12.0577	2.78e-05	0.0147	ACCACGCCCACTCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	71	84	+	12.0577	2.78e-05	0.0147	CTGCCGCCCACTGT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	71	84	+	12.0577	2.78e-05	0.0147	CTGCCGCCCACTGT
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	12	25	+	5.93902	2.78e-05	0.343	GGTGTCAAAGGCCG
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	12	25	+	5.93902	2.78e-05	0.343	GGTGTCAAAGGCCG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	12	25	+	5.93902	2.78e-05	0.343	GGTGTCAAAGGCCG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	12	25	+	5.93902	2.78e-05	0.343	GGTGTCAAAGGCCG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	12	25	+	5.93902	2.78e-05	0.343	GGTGTCAAAGGCCG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	47	55	+	12.8269	2.78e-05	0.442	TAACCGCAG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	78	88	-	13.2857	2.78e-05	0.154	GACAGCTGTAC
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	3	21	-	12.1129	2.78e-05	0.671	TCACTTCCGGTAACCCCGC
mix-a	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	46	56	-	12.6825	2.78e-05	1	AATTAATTATG
mix-a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	46	56	-	12.6825	2.78e-05	1	AATTAATTATG
mix-a	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	59	69	+	12.6825	2.78e-05	1	AATTAATTATG
LIN54	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	38	46	-	11.9841	2.78e-05	1	TTTTGAATT
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	35	51	+	11.4079	2.78e-05	0.537	TTGGTGACGTCAGAGGC
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	64	80	-	11.4079	2.78e-05	0.537	TTGGTGACGTCAGAGGC
Mitf	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	48	57	+	11.7755	2.78e-05	0.172	TGTCACGCGG
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	37	51	+	11.6364	2.78e-05	0.258	CTAGGTGAGTCAGCT
CENPB	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	18	32	-	12.0962	2.78e-05	0.793	CCCGGCTGGAGCGAC
CENPB	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	83	97	+	12.0962	2.78e-05	0.793	CCCGGCTGGAGCGAC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	99	113	+	8.08989	2.78e-05	0.198	GGAACCCTGCGTTTC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	99	113	+	8.08989	2.78e-05	0.198	GGAACCCTGCGTTTC
Sox6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	6	15	+	13.4	2.78e-05	0.702	CCATTGTCTG
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	6	15	+	13.4	2.78e-05	0.702	CCATTGTCTG
POU3F2	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	3	14	-	12.3548	2.78e-05	1	CTATGCTAATTC
E2F3	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	84	101	-	6.6	2.79e-05	1	AGAAAAGGCGCTAAAGCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.1.0	12	31	+	6.55046	2.79e-05	0.0475	CACACACACACACACTCTCA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.0.0	12	31	+	6.55046	2.79e-05	0.0475	CACACACACACACACTCTCA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	12	31	+	6.55046	2.79e-05	0.0475	CACACACACACACACTCTCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	12	31	+	6.55046	2.79e-05	0.0475	CACACACACACACACTCTCA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	7	17	-	12.6721	2.79e-05	0.0441	CCGGAAATGAA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	7	17	-	12.6721	2.79e-05	0.0441	CCGGAAATGAA
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	51	61	-	12.6721	2.79e-05	0.0441	CCGGAAATGAA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	25	38	+	12.9231	2.79e-05	0.182	GGGATGTGATTCAT
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	15	28	-	12.9231	2.79e-05	0.182	GGACACTGACTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	22	35	-	12.9231	2.79e-05	0.182	GGGATGTGATTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	87	100	+	12.9231	2.79e-05	0.182	GGACACTGACTCAT
KLF14	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	2	15	+	11.0172	2.79e-05	0.0251	GGCCCCGCCCTTCC
KLF14	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	13	26	+	11.0172	2.79e-05	0.0251	CACCCCGCCTCCTT
KLF14	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	36	49	+	11.0172	2.79e-05	0.0251	AGCTGCGCCCCCCG
KLF14	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	66	79	-	11.0172	2.79e-05	0.0251	AGCTGCGCCCCCCG
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	21	32	+	12.431	2.79e-05	0.365	GGGACCCCCCAC
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	+	13.0909	2.79e-05	0.16	TATGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	+	13.0909	2.79e-05	0.16	TATGAGTCAGC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	37	48	-	12.5091	2.79e-05	0.0893	AGCCCACAGGCA
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	107	-	10.6061	2.79e-05	0.268	GAGATTAAAGGTGA
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	+	11.2364	2.79e-05	0.146	TGTTACGTCACA
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	21	32	+	9.53061	2.79e-05	0.109	AGTGACATCACC
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	65	76	+	9.53061	2.79e-05	0.109	AGTGACATCACC
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	39	50	-	9.53061	2.79e-05	0.109	AGTGACATCACC
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	83	94	-	9.53061	2.79e-05	0.109	AGTGACATCACC
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	7	18	-	3.53846	2.79e-05	0.816	TGACAGTTCTCA
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	7	18	-	3.53846	2.79e-05	0.816	TGACAGTTCTCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	38	+	12.2623	2.79e-05	0.064	TCCCCGCAGGGGT
NFYA	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	1	18	+	11.2439	2.79e-05	0.108	CACTCTCTCATTGGTTAA
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	12.8939	2.79e-05	0.247	GCCACGTGGC
MNT	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	12.8939	2.79e-05	0.247	GCCACGTGGC
SP4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	21	37	+	6.94545	2.79e-05	0.0196	CACTCCCCGCCCCTCCG
SP4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	78	94	-	6.94545	2.79e-05	0.0196	CACTCCCCGCCCCTCCG
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	40	60	+	11.0645	2.79e-05	0.154	GGTTCCTTTCTCTTCCTTCTG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	40	60	+	11.0645	2.79e-05	0.154	GGTTCCTTTCTCTTCCTTCTG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	31	45	-	12.0606	2.79e-05	0.0802	GTCTCGCGTTCTTTT
ZBTB33	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	70	84	+	12.0606	2.79e-05	0.0802	GTCTCGCGTTCTTTT
USF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	40	50	-	12.6122	2.79e-05	0.123	GTCACCTGACC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.493	2.79e-05	0.103	TCCGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.493	2.79e-05	0.103	TCCGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.493	2.79e-05	0.103	TCCGGAAGTA
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.493	2.79e-05	0.103	TCCGGAAGTA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	+	12.7091	2.79e-05	0.063	AGCCGAAGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	-	12.7091	2.79e-05	0.063	AGCCGAAGGCG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	25	38	+	12.6061	2.79e-05	0.0397	GCGGCTCTGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	25	38	+	12.6061	2.79e-05	0.0397	GCGGCTCTGGCCTC
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	83	93	-	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	83	93	-	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	20	30	+	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	20	30	+	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	41	51	+	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	41	51	+	12.9655	2.79e-05	0.0458	AGGAGGGAAGT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	39	54	+	11.8545	2.79e-05	0.0374	CGAGGCCCACCCACCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	39	54	+	11.8545	2.79e-05	0.0374	CGAGGCCCACCCACCT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	39	54	+	11.8545	2.79e-05	0.0374	CGAGGCCCACCCACCT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	39	54	+	11.8545	2.79e-05	0.0374	CGAGGCCCACCCACCT
EGR4	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	61	76	-	11.8545	2.79e-05	0.0374	CGAGGCCCACCCACCT
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	79	91	-	11.8714	2.79e-05	0.729	TGTCCAGGTGTGG
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	25	44	-	6.54128	2.79e-05	0.0475	CCCTCCCCCACACCCGCCCA
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	41	60	-	6.54128	2.79e-05	0.0475	CCCTCCCCCACACCCGCCCA
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	55	74	+	6.54128	2.79e-05	0.0475	CCCTCCCCCACACCCGCCCA
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	71	90	+	6.54128	2.79e-05	0.0475	CCCTCCCCCACACCCGCCCA
TP53	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	27	44	+	8.93878	2.79e-05	0.979	GACTGGCCCTTACATGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	62	71	-	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	8	17	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	8	17	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	39	48	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	39	48	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	39	48	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	39	48	+	12.5857	2.79e-05	0.174	AGCTGCTGCT
Ascl2	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	77	86	+	12.5857	2.79e-05	0.174	AGCATCTGCT
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	44	-	12.617	2.8e-05	0.311	GTCAGTGACGTCACG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	44	-	12.617	2.8e-05	0.311	GTCAGTGACGTCACG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	44	-	12.617	2.8e-05	0.311	GTCAGTGACGTCACG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	44	-	12.617	2.8e-05	0.311	GTCAGTGACGTCACG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	21	38	+	-10.2237	2.8e-05	0.0328	GGAGGAGAGGAGGCAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	32	49	+	-10.2237	2.8e-05	0.0328	GGAGGGGGGGGGAGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	32	49	+	-10.2237	2.8e-05	0.0328	GGAGGGGGGGGGAGAAGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	33	50	+	-10.2237	2.8e-05	0.0328	AGGAGGCGGGGAGGAGGG
PPARG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	82	101	-	9.37778	2.8e-05	1	CAGGGTCACTGTGAGCAAAA
PPARG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	82	101	-	9.37778	2.8e-05	1	CAGGGTCACTGTGAGCAAAA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	71	82	-	12.3857	2.8e-05	0.217	TCCGCCCACCGT
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	98	109	-	12.3857	2.8e-05	0.217	TCCGCCCACCGT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	98	109	-	12.3857	2.8e-05	0.217	TCCGCCCACCGT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	98	109	-	12.3857	2.8e-05	0.217	TCCGCCCACCGT
Klf4	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	1	10	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	31	40	+	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	24	33	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	24	33	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	24	33	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	24	33	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	25	34	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	37	46	+	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	39	48	+	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	81	90	+	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	95	104	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	95	104	-	12.398	2.8e-05	0.0142	CGGGTGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	105	114	+	12.398	2.8e-05	0.0142	CGGGTGGGGC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	4	17	-	8.93617	2.8e-05	0.0959	CCCACCCCGCCGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	4	17	-	8.93617	2.8e-05	0.0959	CCCACCCCGCCGAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	4	17	-	8.93617	2.8e-05	0.0959	CCCACCCCGCCGAG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	8	21	-	8.93617	2.8e-05	0.0959	CGCCCCGCGCTGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	13	26	-	8.93617	2.8e-05	0.0959	CGCCCCGCGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	35	48	-	8.93617	2.8e-05	0.0959	CCCACCCCGCTGTC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	35	48	-	8.93617	2.8e-05	0.0959	CCCACCCCGCTGTC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	23	36	+	8.93617	2.8e-05	0.0959	CCCACCCCGCTGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	23	36	+	8.93617	2.8e-05	0.0959	CCCACCCCGCTGTC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	12	26	+	12.1897	2.8e-05	0.00831	AGCCCGCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	12	26	+	12.1897	2.8e-05	0.00831	AGCCCGCCTTCCTGC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	12	26	+	12.1897	2.8e-05	0.00831	AGCCCGCCTTCCTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	12	26	+	12.1897	2.8e-05	0.00831	AGCCCGCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	39	+	12.1897	2.8e-05	0.00831	ACCCCGCCCTCAGGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	39	+	12.1897	2.8e-05	0.00831	ACCCCGCCCTCAGGT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	81	95	+	12.1897	2.8e-05	0.00831	CTTCCTCCCCTTGCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	81	95	+	12.1897	2.8e-05	0.00831	CTTCCTCCCCTTGCC
SP2	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	64	78	-	12.1897	2.8e-05	0.00831	CCTCCTCCTCCGCGC
SP2	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	89	103	-	12.1897	2.8e-05	0.00831	AGCCCGCCTTCCTGC
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	16	36	-	11.3265	2.8e-05	0.0118	GAGGGCGGAGGACGCTGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	25	45	-	11.3265	2.8e-05	0.0118	GGGGGGCGGGAGGGCGGAGGA
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	75	95	-	11.3265	2.8e-05	0.0118	TAGAGAGGGGAAGAATGGGGA
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	75	95	-	11.3265	2.8e-05	0.0118	TAGAGAGGGGAAGAATGGGGA
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	75	95	-	11.3265	2.8e-05	0.0118	TAGAGAGGGGAAGAATGGGGA
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	75	95	-	11.3265	2.8e-05	0.0118	TAGAGAGGGGAAGAATGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	78	98	-	11.3265	2.8e-05	0.0118	AGAGGCGAGGGGCGGGGGTGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	78	98	-	11.3265	2.8e-05	0.0118	AGAGGCGAGGGGCGGGGGTGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	80	100	-	11.3265	2.8e-05	0.0118	GGAGGGCCGGGGGAGGGAGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	84	104	-	11.3265	2.8e-05	0.0118	GGGAGCGGGCGGGCGAGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	85	105	-	11.3265	2.8e-05	0.0118	GGGGAAAAGGGGAGGTGGGAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	10	30	+	11.3265	2.8e-05	0.0118	GGGGAAAAGGGGAGGTGGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	11	31	+	11.3265	2.8e-05	0.0118	GGGAGCGGGCGGGCGAGGGGG
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	20	40	+	11.3265	2.8e-05	0.0118	TAGAGAGGGGAAGAATGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	70	90	+	11.3265	2.8e-05	0.0118	GGGGGGCGGGAGGGCGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	79	99	+	11.3265	2.8e-05	0.0118	GAGGGCGGAGGACGCTGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	92	112	+	11.3265	2.8e-05	0.0118	GGGGCAGGGCGTGGTGAGGTA
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	38	48	-	12.9483	2.8e-05	0.0451	ACGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	38	48	-	12.9483	2.8e-05	0.0451	ACGCGGGAGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	67	77	+	12.9483	2.8e-05	0.0451	ACGCGGGAGGA
Znf423	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	84	98	+	8.07865	2.8e-05	0.198	AGACCCTAAGATGGC
HOXC10	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	21	30	+	12.5818	2.8e-05	1	ATCGTAAAAC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	-	11.2182	2.8e-05	0.146	TGTGACGTAACA
SRF	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	23	38	+	7.95082	2.8e-05	0.575	ATACCTTACATGGACA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	37	55	-	12.0645	2.8e-05	0.137	GGAAGCAGGCGCGCGAGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	37	55	-	12.0645	2.8e-05	0.137	GGAAGCAGGCGCGCGAGAC
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	55	-	10.4262	2.8e-05	0.176	TCTCCCCCGCGGCG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	55	-	10.4262	2.8e-05	0.176	TCTCCCCCGCGGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	55	-	10.4262	2.8e-05	0.176	TCTCCCCCGCGGCG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	55	-	10.4262	2.8e-05	0.176	TCTCCCCCGCGGCG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	55	-	10.4262	2.8e-05	0.176	TCTCCCCCGCGGCG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	23	37	+	11.9818	2.8e-05	0.0985	GGCTTCCCGCAGTGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	23	37	+	11.9818	2.8e-05	0.0985	GGCTTCCCGCAGTGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	23	37	+	11.9818	2.8e-05	0.0985	GGCTTCCCGCAGTGC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	23	37	+	11.9818	2.8e-05	0.0985	GGCTTCCCGCAGTGC
ZIC4	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	40	-	11.9818	2.8e-05	0.0985	CCACCCCTGCGGGGA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	70	83	-	8.2551	2.8e-05	0.0647	GGGGACATGGGGTG
KLF16	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	46	56	+	12.1897	2.8e-05	0.0129	GACCCCCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	79	+	12.1897	2.8e-05	0.0129	GTCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	11	21	-	12.1897	2.8e-05	0.0129	GTCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	36	46	-	12.1897	2.8e-05	0.0129	GTCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	36	46	-	12.1897	2.8e-05	0.0129	GTCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	59	69	-	12.1897	2.8e-05	0.0129	GACCCCCCCAC
SP4	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	70	86	+	6.92727	2.8e-05	0.0196	CAAGCCCCACCCAGTTC
SP4	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	29	45	-	6.92727	2.8e-05	0.0196	CAAGCCCCACCCAGTTC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	39	51	-	10.7576	2.8e-05	0.231	CAGGAATTCCCCT
NFKB2	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	64	76	+	10.7576	2.8e-05	0.231	CAGGAATTCCCCT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
ERF	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.5857	2.8e-05	0.0852	GCCGGAAGTT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	+	12.3654	2.81e-05	0.765	ATTGCGTAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	+	12.3654	2.81e-05	0.765	ATTGCGTAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	+	12.3654	2.81e-05	0.765	ATTGCGTAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	+	12.3654	2.81e-05	0.765	ATTGCGTAAC
CEBPD	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	-	12.3654	2.81e-05	0.765	ATTGCGTAAC
CEBPD	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	-	12.3654	2.81e-05	0.765	ATTGCGTAAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	28	41	-	11	2.81e-05	0.0251	GACCCCACCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	28	41	-	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	74	87	+	11	2.81e-05	0.0251	GACCCCACCCCCCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	74	87	+	11	2.81e-05	0.0251	GGCCCCACCCACAT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	69	82	-	11	2.81e-05	0.0251	GACTCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	69	82	-	11	2.81e-05	0.0251	GACTCCGCCCCCGC
Myod1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	37	+	13.2449	2.81e-05	0.131	CGCAGCTGCGCGC
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	92	+	13.2449	2.81e-05	0.131	CGCAGCTGCGCGC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	63	75	-	13.2449	2.81e-05	0.131	TTCAGCTGCCGCG
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	89	101	-	13.2449	2.81e-05	0.131	TTCAGCTGCCGCG
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	12.9615	2.81e-05	0.293	GGCACGTGCC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	12.9615	2.81e-05	0.293	GGCACGTGCC
MAX	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	-	12.9615	2.81e-05	0.293	CCCACGTGCG
MAX	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	-	12.9615	2.81e-05	0.293	CCCACGTGCG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	12.9615	2.81e-05	0.293	GGCACGTGCC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	12.9615	2.81e-05	0.293	GGCACGTGCC
MAX	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	+	12.9615	2.81e-05	0.293	CCCACGTGCG
MAX	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	+	12.9615	2.81e-05	0.293	CCCACGTGCG
Gabpa	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	44	54	+	12.6557	2.81e-05	0.0441	CCGGAAGAGAA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	61	71	-	12.6557	2.81e-05	0.0441	CCGGAAGAGAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	61	71	-	12.6557	2.81e-05	0.0441	CCGGAAGAGAA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	61	71	-	12.6557	2.81e-05	0.0441	CCGGAAGAGAA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	61	71	-	12.6557	2.81e-05	0.0441	CCGGAAGAGAA
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.6545	2.81e-05	0.102	ACCGGAAGGG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.6545	2.81e-05	0.102	ACCGGAAGGG
NRF1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	3	13	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	11	21	+	12.0364	2.81e-05	0.0127	GCGCGTGCGAA
NRF1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	42	52	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	42	52	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	53	63	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	55	65	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	57	67	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	87	97	+	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	18	28	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	18	28	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	25	35	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	25	35	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	48	58	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	63	73	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	63	73	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	94	104	-	12.0364	2.81e-05	0.0127	GCGCGTGCGAA
NRF1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	102	112	-	12.0364	2.81e-05	0.0127	GCGGGCGCGCG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	15	32	+	-10.2368	2.81e-05	0.0328	GGGCGGGGGAGAGGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	17	34	+	-10.2368	2.81e-05	0.0328	AGGCGGAGGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	17	34	+	-10.2368	2.81e-05	0.0328	AGGCGGAGGGGAGGAGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	80	97	+	-10.2368	2.81e-05	0.0328	GGCGGGGAGGGAAGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	18	35	-	-10.2368	2.81e-05	0.0328	GGCGGGGAGGGAAGCAGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	9	27	+	10.6721	2.81e-05	0.0936	CGGCCAGCTAGGGGCGCGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	42	60	+	10.6721	2.81e-05	0.0936	CGGCCAGCTAGGGGCGCGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	42	60	+	10.6721	2.81e-05	0.0936	CGGCCAGCTAGGGGCGCGG
TFEB	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	+	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	+	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	-	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	+	12.5577	2.81e-05	0.123	ATCATGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	+	12.5577	2.81e-05	0.123	ATCATGTGAC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	+	13.0545	2.81e-05	0.16	ACTGACTCAGC
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	-	13.0545	2.81e-05	0.16	ACTGACTCAGC
NRL	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	103	113	+	11.5962	2.81e-05	0.776	TGATTGCTGAC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	92	-	12.7636	2.81e-05	0.05	GGCCTGAGGCG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	9	19	-	12.7143	2.81e-05	0.196	CTTCTGAGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	9	19	-	12.7143	2.81e-05	0.196	CTTCTGAGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	9	19	-	12.7143	2.81e-05	0.196	CTTCTGAGAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	9	19	-	12.7143	2.81e-05	0.196	CTTCTGAGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	9	19	-	12.7143	2.81e-05	0.196	CTTCTGAGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	20	30	+	12.7143	2.81e-05	0.196	TTGCCAGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	20	30	+	12.7143	2.81e-05	0.196	TTGCCAGGAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	20	30	+	12.7143	2.81e-05	0.196	TTGCCAGGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	20	30	+	12.7143	2.81e-05	0.196	TTGCCAGGAAA
STAT3	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	13	23	-	12.7143	2.81e-05	0.196	TTTCCGGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	92	102	+	12.7143	2.81e-05	0.196	TTTCCGGGAAC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	92	102	+	12.7143	2.81e-05	0.196	TTTCCGGGAAC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	+	12.1967	2.81e-05	0.0561	TGCCGCGCGGGGG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	13	33	+	11.0484	2.81e-05	0.154	CTTCATTTCCTGTTTCAGCTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	77	97	+	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	77	97	+	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	77	97	+	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	77	97	+	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	8	28	-	11.0484	2.81e-05	0.154	CTTCATTTCCTGTTTCAGCTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	12	32	-	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	12	32	-	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	12	32	-	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	12	32	-	11.0484	2.81e-05	0.154	TTCAACTTCCTGTTTTAGTTA
SP8	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	56	67	-	12.2763	2.81e-05	0.0228	GAAACTCCCCCT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	12.1286	2.81e-05	0.205	GTCACGTGAG
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	12.1286	2.81e-05	0.205	GTCACGTGAG
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	12.1286	2.81e-05	0.205	GTCACGTGAG
MLX	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	12.1286	2.81e-05	0.205	GTCACGTGAG
MLX	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	12.1286	2.81e-05	0.205	GTCACGTGAG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	18	31	+	12.0385	2.81e-05	0.0148	CACCCGCCCTCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	18	31	+	12.0385	2.81e-05	0.0148	CACCCGCCCTCTCG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	23	36	-	12.0385	2.81e-05	0.0148	CCTCCTCCCCTGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	23	36	-	12.0385	2.81e-05	0.0148	CCTCCTCCCCTGCT
EGR1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	47	60	+	12.0385	2.81e-05	0.0148	GCTCCACCCCTTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	55	68	-	12.0385	2.81e-05	0.0148	GCTCCACCCCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	84	97	-	12.0385	2.81e-05	0.0148	CACCCGCCCTCTCG
ETV4	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.5862	2.81e-05	0.0999	GCCGGATGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.5862	2.81e-05	0.0999	GCCGGATGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.5862	2.81e-05	0.0999	GCCGGATGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.5862	2.81e-05	0.0999	GCCGGATGTG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	62	76	+	12.1351	2.81e-05	0.149	GGGGGTCGAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	62	76	+	12.1351	2.81e-05	0.149	GGGGGTCGAAGGGCA
HLF	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	+	12.6949	2.81e-05	1	TGTTACATAAGC
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	45	57	-	12.377	2.81e-05	0.359	CTGTCTCCCTGCT
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	58	70	+	12.377	2.81e-05	0.359	CTGTCTCCCTGCT
Sox1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	24	38	+	7.10345	2.81e-05	1	CACACTCCCAGTGTC
Sox1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	24	38	+	7.10345	2.81e-05	1	CACACTCCCAGTGTC
Sox1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	24	38	+	7.10345	2.81e-05	1	CACACTCCCAGTGTC
Sox1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	77	91	-	7.10345	2.81e-05	1	CACACTCCCAGTGTC
POU6F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	72	81	+	12.8182	2.81e-05	1	CGCTCATTAA
POU6F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	72	81	+	12.8182	2.81e-05	1	CGCTCATTAA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	95	108	-	12.5909	2.81e-05	0.0399	CGTCCCCGGGCCTC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	74	87	+	8.13265	2.81e-05	0.365	TGGCCCAGTGCAAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	74	87	+	8.13265	2.81e-05	0.365	TGGCCCAGTGCAAA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	23	37	+	10.5902	2.82e-05	0.0444	CGCCCCGCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	23	37	+	10.5902	2.82e-05	0.0444	CGCCCCGCCCTCCCT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	34	48	-	10.5902	2.82e-05	0.0444	CGCCCCGCCCTCTCT
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	18	30	+	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	18	30	+	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	18	30	+	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	18	30	+	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	79	91	-	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	79	91	-	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	79	91	-	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	79	91	-	10.6207	2.82e-05	0.126	AAACAGGAAGTTG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	47	57	+	12.9796	2.82e-05	0.262	GCTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	47	57	+	12.9796	2.82e-05	0.262	GCTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	47	57	+	12.9796	2.82e-05	0.262	GCTTCCTGGAA
Stat5a::Stat5b	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	58	68	-	12.9796	2.82e-05	0.262	GCTTCCTGGAA
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	18	29	+	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	18	29	+	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	18	29	+	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	18	29	+	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	64	-	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	91	-	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	91	-	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	91	-	12.0164	2.82e-05	0.116	AAACAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	91	-	12.0164	2.82e-05	0.116	AAACAGGAAGTT
BCL6B	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	13	29	-	-11.8	2.82e-05	0.94	CCCTTTCTAGTAATTTC
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	19	31	+	11.7576	2.82e-05	0.641	GTTAAAGTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	19	31	+	11.7576	2.82e-05	0.641	GTTAAAGTTTAAC
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	27	40	+	12.069	2.82e-05	0.927	CTCATGCAAATCAG
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	32	45	-	12.069	2.82e-05	0.927	CTCATGCAAATCAG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	44	58	+	12.2692	2.82e-05	0.335	CGGGAGCAGAGTCCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	44	58	+	12.2692	2.82e-05	0.335	CGGGAGCAGAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	79	93	+	12.2692	2.82e-05	0.335	CGGGAGCAGAGTCCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	79	93	+	12.2692	2.82e-05	0.335	CGGGAGCAGAGTCCG
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	25	35	+	12.5606	2.82e-05	0.0428	CGACCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	36	46	+	12.5606	2.82e-05	0.0428	TCCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	36	46	+	12.5606	2.82e-05	0.0428	TCCCCCACCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	69	79	-	12.5606	2.82e-05	0.0428	TCCCCCACCCA
TCF3	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	5	14	+	13.1538	2.82e-05	0.404	CGCACCTGGT
TCF3	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	101	110	-	13.1538	2.82e-05	0.404	CGCACCTGGT
ZNF143	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	3	18	+	4.96552	2.82e-05	0.299	CTCCCGTGATGCCGCG
ZNF143	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	38	53	+	4.96552	2.82e-05	0.299	CTCCCGTGATGCCGCG
ZNF143	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	62	77	-	4.96552	2.82e-05	0.299	CTCCCGTGATGCCGCG
ZNF143	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	97	112	-	4.96552	2.82e-05	0.299	CTCCCGTGATGCCGCG
ZIC3	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	20	34	-	10.3286	2.82e-05	0.101	GCCTCCCCCCCGCGC
Gata4	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	32	42	+	13.0172	2.82e-05	1	TCTTATCTTCA
SP4	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	44	60	+	6.90909	2.82e-05	0.0197	CTAGCTCCACCCCTTCC
SP4	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	55	71	-	6.90909	2.82e-05	0.0197	CTAGCTCCACCCCTTCC
NFYA	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	53	70	+	11.2195	2.82e-05	0.108	GAGGTGTTGATTGGACAA
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	8	22	-	11.5455	2.82e-05	0.266	TCACTTTCTCTTTAT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	8	22	-	11.5455	2.82e-05	0.266	TCACTTTCTCTTTAT
Atoh1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	12.8065	2.82e-05	1	GCCATATGCT
Atoh1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	12.8065	2.82e-05	1	GCCATATGCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	26	39	+	8.23469	2.82e-05	0.0647	GGGGCCGGGTGGGG
TBP	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	47	61	+	12.0833	2.82e-05	0.402	CTATAAGAGGCGGGC
TBP	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	50	64	-	12.0833	2.82e-05	0.402	CTATAAGAGGCGGGC
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	91	103	+	12.6129	2.82e-05	1	CTAACTGAATCAT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	59	69	+	13.0204	2.82e-05	0.0904	GCCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	59	69	+	13.0204	2.82e-05	0.0904	GCCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	59	69	+	13.0204	2.82e-05	0.0904	GCCAGGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	59	69	+	13.0204	2.82e-05	0.0904	GCCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	59	69	+	13.0204	2.82e-05	0.0904	GCCAGGTGACA
SP2	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	11	25	+	12.1724	2.82e-05	0.00835	GGCCCTCCCAGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	63	77	+	12.1724	2.82e-05	0.00835	TCCCCGCCTCGGCAG
SP2	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	65	79	+	12.1724	2.82e-05	0.00835	CGCCCGCCCTTCTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	22	36	-	12.1724	2.82e-05	0.00835	AGCCCTCCTCCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	22	36	-	12.1724	2.82e-05	0.00835	AGCCCTCCTCCCCTC
SP2	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	36	50	-	12.1724	2.82e-05	0.00835	CGCCCGCCCTTCTTC
SP2	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	90	104	-	12.1724	2.82e-05	0.00835	GGCCCTCCCAGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	99	113	-	12.1724	2.82e-05	0.00835	CCCCCTCCTTTTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	99	113	-	12.1724	2.82e-05	0.00835	CCCCCTCCTTTTCCG
Gabpa	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	45	55	-	12.6393	2.82e-05	0.0441	CCGGAAGCCAT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	-	12.2295	2.82e-05	0.064	CGCCCCCACGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	-	12.2295	2.82e-05	0.064	CGCCCCCACGGCT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	25	40	+	11.8364	2.82e-05	0.0374	CCCGGCCCACCCCTTC
EGR4	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	32	47	+	11.8364	2.82e-05	0.0374	GCACCCCCTCCCACTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	25	40	-	11.8364	2.82e-05	0.0374	CCCCGGCCACGCCCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	25	40	-	11.8364	2.82e-05	0.0374	CCCCGGCCACGCCCCT
EGR4	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	34	49	-	11.8364	2.82e-05	0.0374	AGCCGCCCACCCTCCC
EGR4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	34	49	-	11.8364	2.82e-05	0.0374	AGCCGCCCACCCTCCC
EGR4	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	67	82	+	11.8364	2.82e-05	0.0374	AGCCGCCCACCCTCCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	75	90	-	11.8364	2.82e-05	0.0374	CCCGGCCCACCCCTTC
HOXB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	77	86	-	10.32	2.82e-05	1	AGTAATTAGA
HOXB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	77	86	-	10.32	2.82e-05	1	AGTAATTAGA
GCM1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	29	39	+	12.4082	2.82e-05	0.531	AATGCTGGTGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	50	63	+	10.9828	2.83e-05	0.0252	GGGCGCGCCCCCGT
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	52	61	+	12.4516	2.83e-05	1	GTTTTCCACG
SP1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	3	13	-	12.6346	2.83e-05	0.00947	CGCCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	20	30	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	20	30	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	30	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	20	30	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	20	30	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	13	23	-	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	58	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	39	49	-	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	65	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	65	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	65	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	73	+	12.6346	2.83e-05	0.00947	ACCCCTCCCAC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	104	114	+	12.6346	2.83e-05	0.00947	CCCCCACCCCA
RELA	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	48	57	+	12.5918	2.83e-05	0.199	CGGATTTTCC
RELA	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	58	67	-	12.5918	2.83e-05	0.199	CGGATTTTCC
NFATC3	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	13	22	-	11.5859	2.83e-05	0.908	GTTTTCCATT
NFATC3	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	93	102	+	11.5859	2.83e-05	0.908	GTTTTCCATT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	88	98	-	12.7273	2.83e-05	0.0463	GAGCTTCCGGG
NFYB	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	5	19	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	9	23	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	9	23	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	9	23	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	9	23	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	43	57	+	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	92	106	-	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NFYB	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	96	110	-	12.5	2.83e-05	0.105	GGCTCTACCAATCAG
NR3C2	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	+	8.12766	2.83e-05	0.952	AGGAACTTCCTGTCCCG
NR3C2	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	-	8.12766	2.83e-05	0.952	AGGAACTTCCTGTCCCG
ZIC4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	2	16	+	11.9636	2.83e-05	0.0985	CCCCGCCTGCCGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	57	71	+	11.9636	2.83e-05	0.0985	CCCCGCCTGCCGCGC
ZIC4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	44	58	-	11.9636	2.83e-05	0.0985	CCCCGCCTGCCGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	99	113	-	11.9636	2.83e-05	0.0985	CCCCGCCTGCCGCGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	4	22	+	12.0484	2.83e-05	0.137	GTATTCAGCGGAGCGCGGT
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	59	77	-	12.0484	2.83e-05	0.137	GTATTCAGCGGAGCGCGGT
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	59	77	-	12.0484	2.83e-05	0.137	GTATTCAGCGGAGCGCGGT
EGR3	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	10	24	+	9.06897	2.83e-05	0.0327	GCCCTCCCCCGCCCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	18	32	+	9.06897	2.83e-05	0.0327	GCACCCCCCCGCCAA
EGR3	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	91	105	-	9.06897	2.83e-05	0.0327	GCCCTCCCCCGCCCG
TCF4	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	35	44	+	13.2653	2.83e-05	0.422	TGCACCTGTC
TCF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	80	-	13.2653	2.83e-05	0.422	TGCACCTGTC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	80	-	13.2653	2.83e-05	0.422	TGCACCTGTC
CTCF	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	3	21	+	10.6557	2.83e-05	0.0936	AGACATGCAGGGGGCGGAG
CTCF	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	94	112	-	10.6557	2.83e-05	0.0936	AGACATGCAGGGGGCGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	17	37	-	11.3061	2.83e-05	0.0118	GGAGAGCGGGGAGGGGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	17	37	-	11.3061	2.83e-05	0.0118	GGAGAGCGGGGAGGGGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	17	37	-	11.3061	2.83e-05	0.0118	GGAGAGCGGGGAGGGGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	17	37	-	11.3061	2.83e-05	0.0118	GGAGAGCGGGGAGGGGGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	33	53	-	11.3061	2.83e-05	0.0118	GAGGAAGAGGAAGAGGAGGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	41	61	-	11.3061	2.83e-05	0.0118	GAGGAAGAGGAAGAGGAGGAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	59	79	-	11.3061	2.83e-05	0.0118	AGATAAGGAAGGGAAGAATGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	6	26	+	11.3061	2.83e-05	0.0118	AGATAAGGAAGGGAAGAATGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	18	38	+	11.3061	2.83e-05	0.0118	AGATAAGGAAGGGAAGAATGA
ZNF263	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	36	56	+	11.3061	2.83e-05	0.0118	AGATAAGGAAGGGAAGAATGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	53	73	+	11.3061	2.83e-05	0.0118	GAAAGGGGAAGGGGAGGTGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	54	74	+	11.3061	2.83e-05	0.0118	GAGGAAGAGGAAGAGGAGGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	62	82	+	11.3061	2.83e-05	0.0118	GAGGAAGAGGAAGAGGAGGAG
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	2	11	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	18	27	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	19	28	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	19	28	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	19	28	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	19	28	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	31	40	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	35	44	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	40	49	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	49	58	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	61	70	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	65	74	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	65	74	-	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	29	38	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	30	39	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	30	39	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	35	44	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	66	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	60	69	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	60	69	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	71	80	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	80	89	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	91	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	97	+	12.9184	2.83e-05	0.0133	GCTCCTCCCC
ESR2	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	30	44	-	12.2115	2.83e-05	0.426	CGGTCAGCCTGACTC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	16	26	-	12.7455	2.83e-05	0.05	CGCCCCGGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	16	26	-	12.7455	2.83e-05	0.05	CGCCCCGGGCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	63	+	12.7455	2.83e-05	0.05	CGCCCCGGGCC
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	22	35	-	9.34211	2.83e-05	0.56	GAAACAGGTGGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	94	103	+	11.7449	2.83e-05	0.172	GGTCACGGGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	94	103	+	11.7449	2.83e-05	0.172	GGTCACGGGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	94	103	+	11.7449	2.83e-05	0.172	GGTCACGGGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	94	103	+	11.7449	2.83e-05	0.172	GGTCACGGGG
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	+	12.4184	2.83e-05	0.0857	AGCCCGGGGCCA
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	-	12.4184	2.83e-05	0.0857	AGCCCGGGGCCA
ZBTB18	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	78	90	-	11.8429	2.83e-05	0.729	GAAGCAGATGTGG
THAP1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	22	30	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	34	42	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	42	50	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	46	54	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	48	56	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	48	56	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	49	57	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	58	66	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	63	71	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	63	71	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	63	71	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	63	71	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	63	71	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	70	78	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	70	78	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	66	74	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	73	81	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	84	92	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	84	92	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	84	92	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	84	92	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	91	99	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	91	99	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	91	99	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	98	106	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	98	106	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	98	106	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	98	106	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	92	100	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	104	112	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	104	112	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	104	112	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	104	112	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	105	113	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	105	113	+	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	103	111	-	10.6447	2.83e-05	0.192	CTGCCCGCC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	103	111	-	10.6447	2.83e-05	0.192	CTGCCCGCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	92	102	+	12.1724	2.83e-05	0.0129	TTCACGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	13	23	-	12.1724	2.83e-05	0.0129	TTCACGCCCCC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	44	54	-	12.3966	2.83e-05	0.215	TCTTGTGGTTA
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	101	111	+	12.3966	2.83e-05	0.215	TCTTGTGGTTA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	+	12.4909	2.83e-05	0.0893	TGGCTCAGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	+	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	+	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	-	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	-	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	-	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	-	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	-	12.4909	2.83e-05	0.0893	ACCCCGGGGGCG
HEY2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	-	12.2241	2.83e-05	0.16	GACACGTGGG
HEY2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	+	12.2241	2.83e-05	0.16	GACACGTGGG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	+	12.2241	2.83e-05	0.16	GACACGTGGG
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	43	57	-	12.0303	2.84e-05	0.0802	CCCTCGCGCGACGTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	44	58	+	12.0303	2.84e-05	0.0802	CGCCCGCGAGCCCCC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	58	72	+	12.0303	2.84e-05	0.0802	CCCTCGCGCGACGTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	58	72	+	12.0303	2.84e-05	0.0802	CCCTCGCGCGACGTT
Hoxd3	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	81	96	+	12.2857	2.84e-05	1	ATGTGATCATTAACCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	+	12.1803	2.84e-05	0.0561	TGCCGCCCGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	+	12.1803	2.84e-05	0.0561	TGCCGCCCGGGGT
ZIC3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	13	27	-	10.3143	2.84e-05	0.101	CGCCCCCCGCCGCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	4	14	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	13	23	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	14	24	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	14	24	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	14	24	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	14	24	-	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
SP1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	92	102	+	12.6154	2.84e-05	0.00948	CCTCCGCCCCA
KLF13	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	29	46	-	7.53448	2.84e-05	0.186	TTGCCACACCCACCCTGC
KLF13	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	69	86	+	7.53448	2.84e-05	0.186	TTGCCACACCCACCCTGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	7	17	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	7	17	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	8	18	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	24	34	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	55	65	-	12.9483	2.84e-05	0.0458	TCGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	55	65	-	12.9483	2.84e-05	0.0458	TCGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	83	93	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	83	93	-	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	50	60	+	12.9483	2.84e-05	0.0458	TCGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	53	63	+	12.9483	2.84e-05	0.0458	TCGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	53	63	+	12.9483	2.84e-05	0.0458	TCGCGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	62	72	+	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	67	77	+	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	81	91	+	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	98	108	+	12.9483	2.84e-05	0.0458	CGGCGGGAGGG
ETV5	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	12.0909	2.84e-05	0.0782	GCCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	12.0909	2.84e-05	0.0782	GCCGGAAGCT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	29	+	13	2.84e-05	0.0904	CCCACGTGATC
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	29	+	13	2.84e-05	0.0904	CCCACGTGATC
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	29	+	13	2.84e-05	0.0904	CCCACGTGATC
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	29	+	13	2.84e-05	0.0904	CCCACGTGATC
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	29	+	13	2.84e-05	0.0904	CCCACGTGATC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	73	83	-	12.6939	2.84e-05	0.196	ATTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	73	83	-	12.6939	2.84e-05	0.196	ATTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	73	83	-	12.6939	2.84e-05	0.196	ATTCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	73	83	-	12.6939	2.84e-05	0.196	ATTCCTGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	73	83	-	12.6939	2.84e-05	0.196	ATTCCTGGAAA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	22	32	-	12.2927	2.84e-05	0.0158	GCCACTCCCAA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	22	32	-	12.2927	2.84e-05	0.0158	GCCACTCCCAA
HES7	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	35	46	+	6.41379	2.84e-05	0.189	TGACACGAGCCT
HES7	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	69	80	-	6.41379	2.84e-05	0.189	TGACACGAGCCT
TP73	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	29	46	+	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	35	52	+	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	35	52	+	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	35	52	+	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	33	50	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	33	50	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	63	80	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	69	86	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	69	86	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
TP73	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	69	86	-	10.75	2.84e-05	0.609	AGCGAGTGCAGACACGTG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	10	23	+	6.72727	2.84e-05	0.379	CCCCCCCCACAGTG
HMBOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	95	104	+	11.9839	2.84e-05	1	CCTGGTTACC
HMBOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	95	104	+	11.9839	2.84e-05	1	CCTGGTTACC
HEY1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	12	21	-	12.8545	2.84e-05	0.106	CACACGCGCC
NFKB1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	52	64	-	5.44898	2.84e-05	0.233	CGGGGATCCCCGG
NFKB1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	53	65	+	5.44898	2.84e-05	0.233	CGGGGATCCCCGG
ELF5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	23	33	+	12.3818	2.84e-05	0.118	AGGAGGAAGTG
ELF5	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	70	80	+	12.3818	2.84e-05	0.118	AGGAGGAAGTG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	88	-	12.3818	2.84e-05	0.118	AGGAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	79	89	-	12.3818	2.84e-05	0.118	AGGAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	79	89	-	12.3818	2.84e-05	0.118	AGGAGGAAGTG
ELF5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	92	-	12.3818	2.84e-05	0.118	AGGAGGAAGTG
HOXC12	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	93	103	+	12.4909	2.84e-05	1	TGTCGTAAACC
HOXC12	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	12	22	-	12.4909	2.84e-05	1	TGTCGTAAACC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	7	18	-	12	2.84e-05	0.116	GACCCGGAAGAT
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	7	18	-	12	2.84e-05	0.116	GACCCGGAAGAT
Hes1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	42	51	+	10.5594	2.84e-05	0.075	CGCACGCGTA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	52	63	+	12.1735	2.84e-05	0.146	TTTAAGGGGCCA
Hnf4a	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	60	75	+	6.21818	2.84e-05	0.312	AGGGCCAAGGTACAGG
Hnf4a	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	40	55	-	6.21818	2.84e-05	0.312	AGGGCCAAGGTACAGG
SP8	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	33	44	+	12.2632	2.84e-05	0.023	ACCCCGCCTACC
SP8	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	60	71	+	12.2632	2.84e-05	0.023	ACCCCGCCTACC
KLF16	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	25	+	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	41	+	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	41	+	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	41	+	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	41	+	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	90	100	-	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	90	100	-	12.1552	2.84e-05	0.0129	GGCCCGCCCAC
EGR2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	21	31	-	11.4138	2.84e-05	0.0681	GCGCCCACGTG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	39	56	+	-10.2763	2.84e-05	0.033	AGGAAGGAGGGAGGCAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	65	82	+	-10.2763	2.84e-05	0.033	GAGAGGGAGGAGGGGAAG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	59	76	-	-10.2763	2.84e-05	0.033	AGGAAGGAGGGAGGCAGC
Arid3b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	14	+	11.7143	2.84e-05	1	CAATTAATTAA
Arid3b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	14	+	11.7143	2.84e-05	1	CAATTAATTAA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	72	82	+	12	2.84e-05	0.0128	GAGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	56	66	-	12	2.84e-05	0.0128	GAGCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	56	66	-	12	2.84e-05	0.0128	GAGCAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	61	71	-	12	2.84e-05	0.0128	GAGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	61	71	-	12	2.84e-05	0.0128	GAGGCTGCGCC
ELF4	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	72	-	11.1967	2.84e-05	0.0846	ATGCCGGAAGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	9	22	-	12.0192	2.84e-05	0.0149	GAGCCACCCACACA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	9	22	-	12.0192	2.84e-05	0.0149	GAGCCACCCACACA
EGR1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	21	34	-	12.0192	2.84e-05	0.0149	GTTCTTCCCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	35	48	-	12.0192	2.84e-05	0.0149	CCTCTGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	35	48	-	12.0192	2.84e-05	0.0149	CCTCTGCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	35	48	-	12.0192	2.84e-05	0.0149	CCTCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	35	48	-	12.0192	2.84e-05	0.0149	CCTCTGCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	67	80	+	12.0192	2.84e-05	0.0149	CCTCTGCCTCCTCC
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	48	57	+	12.4909	2.84e-05	1	CCAATAAATA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	13	27	+	9.05172	2.84e-05	0.0327	GTCCGCCCCCTCCCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	1	15	-	9.05172	2.84e-05	0.0327	CGCCGCCCCCTCCCC
EGR3	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	5	19	-	9.05172	2.84e-05	0.0327	AACCGCCCGCGCCTG
EGR3	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	96	110	+	9.05172	2.84e-05	0.0327	AACCGCCCGCGCCTG
Nr5a2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	33	47	-	12.0172	2.85e-05	0.365	GGGGTCAGGGTCAGA
Nr5a2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	68	82	+	12.0172	2.85e-05	0.365	GGGGTCAGGGTCAGA
SREBF1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	6	15	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	11	20	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	11	20	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	38	47	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	38	47	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	38	47	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	91	100	-	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	15	24	+	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	17	26	+	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	17	26	+	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	35	44	+	12.9878	2.85e-05	0.472	CTCAGCCCAC
SREBF1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	100	109	+	12.9878	2.85e-05	0.472	CTCAGCCCAC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	38	49	-	12.1633	2.85e-05	0.146	AGTCAGGGGCCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	+	12.6909	2.85e-05	0.063	CGCCCTAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	+	12.6909	2.85e-05	0.063	CGCCCTAGGCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	19	32	+	10.9655	2.85e-05	0.0252	CTCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	19	32	+	10.9655	2.85e-05	0.0252	CTCCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	36	49	+	10.9655	2.85e-05	0.0252	CTCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	36	49	+	10.9655	2.85e-05	0.0252	CTCCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	50	63	+	10.9655	2.85e-05	0.0252	AGGCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	50	63	+	10.9655	2.85e-05	0.0252	AGGCCCGCCCCTCC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	-	12.9848	2.85e-05	0.173	TGCACGTGAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	12.9848	2.85e-05	0.173	GTCACGTGAG
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	12.9848	2.85e-05	0.173	GTCACGTGAG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	12.9848	2.85e-05	0.173	GTCACGTGAG
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	12.9848	2.85e-05	0.173	GTCACGTGAG
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	12.9848	2.85e-05	0.173	GTCACGTGAG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	+	9.4898	2.85e-05	0.11	TGTTACGTCACG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	-	9.4898	2.85e-05	0.11	AATTACGTAACG
Tcf12	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	32	+	13.2653	2.85e-05	0.154	GGCAGCTGCCT
Tcf12	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	31	-	13.2653	2.85e-05	0.154	GGCAGCTGCCT
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	79	89	-	13.2653	2.85e-05	0.154	CGCAGCTGCGG
Tcf12	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	92	102	+	13.2653	2.85e-05	0.154	GGCAGCTGAAG
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	9	22	+	10.7121	2.85e-05	0.253	CTGCAACGTCACAA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	9	22	+	10.7121	2.85e-05	0.253	CTGCAACGTCACAA
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	43	56	+	10.7121	2.85e-05	0.253	TGGCCACGTGACCT
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	43	56	+	10.7121	2.85e-05	0.253	TGGCCACGTGACCT
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	57	70	-	10.7121	2.85e-05	0.253	CTGCAACGTCACAA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	57	70	-	10.7121	2.85e-05	0.253	CTGCAACGTCACAA
CREB3L1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	59	72	-	10.7121	2.85e-05	0.253	TGGCCACGTGACCT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	51	64	+	6.07273	2.85e-05	0.143	TAAATAGGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	51	64	+	6.07273	2.85e-05	0.143	TAAATAGGGAAGTC
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	88	101	+	9.31579	2.85e-05	0.56	GAAACAGCTGCAGA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	88	101	+	9.31579	2.85e-05	0.56	GAAACAGCTGCAGA
JUND	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	68	78	-	12.7447	2.85e-05	0.173	GGTGAGTCAGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	25	41	-	6.87273	2.85e-05	0.0199	GAACCTCCGCCCACATT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	25	41	-	6.87273	2.85e-05	0.0199	GAACCTCCGCCCACATT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	24	+	12.1552	2.85e-05	0.00841	TCCCCGCCCTCGAGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	24	+	12.1552	2.85e-05	0.00841	TCCCCGCCCTCGAGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	38	52	+	12.1552	2.85e-05	0.00841	CCCCCACCTCAGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	75	89	+	12.1552	2.85e-05	0.00841	CCCCCACCTCAGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	23	37	-	12.1552	2.85e-05	0.00841	GCACCGCCCACAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	26	40	-	12.1552	2.85e-05	0.00841	CCCCCACCTCAGCCC
SP2	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	63	77	-	12.1552	2.85e-05	0.00841	CCCCCACCTCAGCCC
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	60	74	-	12.0182	2.85e-05	0.276	GGAAGGAGAAAGGAG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	60	74	-	12.0182	2.85e-05	0.276	GGAAGGAGAAAGGAG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	60	74	-	12.0182	2.85e-05	0.276	GGAAGGAGAAAGGAG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	60	74	-	12.0182	2.85e-05	0.276	GGAAGGAGAAAGGAG
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	60	74	-	12.0182	2.85e-05	0.276	GGAAGGAGAAAGGAG
CTCF	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	53	71	+	10.6393	2.85e-05	0.0936	CGCACAGCAGGGGTAAGCG
CTCF	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	44	62	-	10.6393	2.85e-05	0.0936	CGCACAGCAGGGGTAAGCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	14	28	+	12.25	2.85e-05	0.335	AGAGGTCAGAGGGCC
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	14	28	+	12.25	2.85e-05	0.335	AGAGGTCAGAGGGCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	102	113	-	12.3966	2.85e-05	0.365	CCGACCCCCGCT
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	102	113	-	12.3966	2.85e-05	0.365	CCGACCCCCGCT
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	91	104	-	11.2459	2.85e-05	0.365	CGCCCCGAGGGACC
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	91	104	-	11.2459	2.85e-05	0.365	CGCCCCGAGGGACC
EBF1	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	11	24	+	11.2459	2.85e-05	0.365	CGCCCCGAGGGACC
FLI1	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.4468	2.85e-05	0.0896	TCCGGAAGTC
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.4468	2.85e-05	0.0896	TCCGGAAGCG
FLI1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.4468	2.85e-05	0.0896	TCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.4468	2.85e-05	0.0896	TCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.4468	2.85e-05	0.0896	TCCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.4468	2.85e-05	0.0896	TCCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.4468	2.85e-05	0.0896	TCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.4468	2.85e-05	0.0896	TCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.4468	2.85e-05	0.0896	TCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.4468	2.85e-05	0.0896	TCCGGAAGTC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	41	54	+	12.8846	2.85e-05	0.182	ACACGGTGAGTCAG
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	38	52	+	-1.48571	2.85e-05	0.656	GGGGTTTGGAGGTTA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	38	52	+	-1.48571	2.85e-05	0.656	GGGGTTTGGAGGTTA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	60	74	-	-1.48571	2.85e-05	0.656	GGGGTTTGGAGGTTA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	60	74	-	-1.48571	2.85e-05	0.656	GGGGTTTGGAGGTTA
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	61	70	+	12.3232	2.85e-05	0.26	CGGAAATTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	61	70	+	12.3232	2.85e-05	0.26	CGGAAATTCC
MSC	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	+	12.0732	2.85e-05	0.569	TACAGCTGTC
SP3	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	9	19	-	12.2846	2.85e-05	0.0159	GCCACGCCTCA
EGR4	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	15	30	+	11.8182	2.85e-05	0.0374	CCACGCCCCCGGCCCT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	22	37	+	11.8182	2.85e-05	0.0374	GTCCGCGCACGCGCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	18	33	-	11.8182	2.85e-05	0.0374	TTACGCCGCCGCCCAT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	31	46	-	11.8182	2.85e-05	0.0374	CTCCGCCCCCACACGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	51	66	-	11.8182	2.85e-05	0.0374	CCCCGCCCGCCCCACC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	80	95	+	11.8182	2.85e-05	0.0374	TTACGCCGCCGCCCAT
Gabpa	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	28	38	+	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	22	32	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	44	54	+	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	55	65	+	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	50	60	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	50	60	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	61	71	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	83	93	+	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	83	93	+	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	77	87	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	77	87	-	12.623	2.85e-05	0.0441	CCGGAAACGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	97	-	12.623	2.85e-05	0.0441	CCGGAAGGGCA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	97	-	12.623	2.85e-05	0.0441	CCGGAAGGGCA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	23	37	+	10.3	2.85e-05	0.101	CACCACCCCCAGTGA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	2	12	+	12.6909	2.86e-05	0.0463	CGGCTTCCGCC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	38	48	+	12.6909	2.86e-05	0.0463	CGGCTTCCGCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	51	61	+	12.6909	2.86e-05	0.0463	CGGCTTCCGCC
ELK4	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	69	79	+	12.6909	2.86e-05	0.0463	CTGTTTCCGGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	82	92	+	12.6909	2.86e-05	0.0463	CGGCTTCCGCC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	109	-	12.6909	2.86e-05	0.0463	CTGTTTCCGGC
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	26	36	-	12.7692	2.86e-05	0.273	CATATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	47	57	-	12.7692	2.86e-05	0.273	CATATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	47	57	-	12.7692	2.86e-05	0.273	CATATGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	58	68	+	12.7692	2.86e-05	0.273	CATATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	65	75	+	12.7692	2.86e-05	0.273	GATTTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	65	75	+	12.7692	2.86e-05	0.273	GATTTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	79	89	+	12.7692	2.86e-05	0.273	CATATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	79	89	+	12.7692	2.86e-05	0.273	CATATGACTCA
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	65	-	12.0323	2.86e-05	0.137	GGCTGCAGCGGGGCGTGGT
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	65	-	12.0323	2.86e-05	0.137	GGCTGCAGCGGGGCGTGGT
TFEC	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	12.439	2.86e-05	0.129	AACACGTGAG
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	12.439	2.86e-05	0.129	AACACGTGAG
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	12.439	2.86e-05	0.129	AACACGTGAG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	12.439	2.86e-05	0.129	AACACGTGAG
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	12.439	2.86e-05	0.129	AACACGTGAG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.5.0	38	52	+	9.98361	2.86e-05	0.652	TATCCACAGGTTTTT
Klf4	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	1	10	+	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	30	39	+	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	27	36	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	27	36	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	35	44	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	35	44	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	59	68	+	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	86	95	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	105	114	-	12.3878	2.86e-05	0.0144	TGGGTGGAGC
GLIS2	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	16	29	+	10.377	2.86e-05	0.176	CACCCCCCTCGTTT
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	10.7885	2.86e-05	0.145	CGCACGTGCT
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	10.7885	2.86e-05	0.145	CGCACGTGCT
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	10.7885	2.86e-05	0.145	CGCACGTGCT
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	10.7885	2.86e-05	0.145	CGCACGTGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	+	12.1639	2.86e-05	0.0561	CGCCCGACGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	+	12.1639	2.86e-05	0.0561	GGCCCTGCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	+	12.1639	2.86e-05	0.0561	GGCCCTGCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	+	12.1639	2.86e-05	0.0561	GGCCCTGCCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	+	12.1639	2.86e-05	0.0561	GGCCCTGCCGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	-	12.1639	2.86e-05	0.0561	CGCCCGACGGGCT
SPDEF	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	76	86	+	12.1455	2.86e-05	0.225	CACCGGATGTG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	96	105	-	11.9194	2.86e-05	0.719	GACATTCCAA
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	96	105	-	11.9194	2.86e-05	0.719	GACATTCCAA
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	79	88	+	11.9194	2.86e-05	0.719	TACATTCCTC
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	79	88	+	11.9194	2.86e-05	0.719	TACATTCCTC
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	79	88	+	11.9194	2.86e-05	0.719	TACATTCCTC
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	79	88	+	11.9194	2.86e-05	0.719	TACATTCCTC
STAT1::STAT2	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	39	53	-	11.5152	2.86e-05	0.266	GAAGTTTCCGGTTCC
STAT1::STAT2	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	62	76	+	11.5152	2.86e-05	0.266	GAAGTTTCCGGTTCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	34	53	-	6.46789	2.86e-05	0.0475	CCACCTGCCACCCACCGCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	34	53	-	6.46789	2.86e-05	0.0475	CCACCTGCCACCCACCGCCT
RREB1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	70	89	-	6.46789	2.86e-05	0.0475	CCCCGCCCCAACCCGCGCGC
RREB1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	26	45	+	6.46789	2.86e-05	0.0475	CCCCGCCCCAACCCGCGCGC
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	62	81	+	6.46789	2.86e-05	0.0475	CCACCTGCCACCCACCGCCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	82	95	-	8.87234	2.86e-05	0.0959	CGCCGCCTGCGGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	82	95	-	8.87234	2.86e-05	0.0959	CGCCGCCTGCGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	32	52	-	11.2857	2.86e-05	0.0119	GATGGTGGCGGGGGCGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	62	82	-	11.2857	2.86e-05	0.0119	GATGAAGGCAGCGGCGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	77	97	-	11.2857	2.86e-05	0.0119	GGGGGAAAAGAAGGCAAGGAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	94	114	-	11.2857	2.86e-05	0.0119	GGGGGGTGGGGGGAAAAGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	1	21	+	11.2857	2.86e-05	0.0119	GGGGGGTGGGGGGAAAAGGGG
Rarg(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	34	50	+	-1.67273	2.86e-05	1	AAGGTCACATGATTTTA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	34	50	+	-1.67273	2.86e-05	1	AAGGTCACATGATTTTA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	+	12.1967	2.86e-05	0.064	CGCCCTTTGGGCG
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	71	85	-	10.7869	2.86e-05	0.335	ATGACTAAGGAAACT
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	+	6.2623	2.86e-05	0.598	TGACACCTGTCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	+	6.2623	2.86e-05	0.598	TGACACCTGTCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	+	6.2623	2.86e-05	0.598	TGACACCTGTCA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	50	61	+	12.3333	2.86e-05	0.109	GAGCGTCCGGGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	50	61	+	12.3333	2.86e-05	0.109	GAGCGTCCGGGG
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	7	21	-	9.03448	2.86e-05	0.0327	CCCCGCCGCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	22	36	-	9.03448	2.86e-05	0.0327	CCCCGCCGCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	43	57	+	9.03448	2.86e-05	0.0327	CGCCCCCCCCGCCCG
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	+	11.8276	2.86e-05	0.209	GTCAGGTGAC
NKX2-8	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	33	41	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	70	78	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	73	81	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	82	90	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	82	90	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	89	97	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	89	97	+	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	37	45	-	11.75	2.86e-05	1	CCACTTCAG
NKX2-8	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	74	82	-	11.75	2.86e-05	1	CCACTTCAG
JUN	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	34	46	-	12.4898	2.86e-05	0.301	AGAATGACGTCAG
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	39	53	+	1.10909	2.86e-05	0.506	AAAAAAACTAAAACT
IRF9	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	55	69	+	1.10909	2.86e-05	0.506	AATGAAATTGAAAAT
SP4	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	47	63	+	6.85455	2.87e-05	0.0199	CTGGCCCCTCCCCAAGG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	52	68	-	6.85455	2.87e-05	0.0199	CTGGCCCCTCCCCAAGG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	52	68	-	6.85455	2.87e-05	0.0199	CTGGCCCCTCCCCAAGG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	52	68	-	6.85455	2.87e-05	0.0199	CTGGCCCCTCCCCAAGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	52	68	-	6.85455	2.87e-05	0.0199	CTGGCCCCTCCCCAAGG
ELF5	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	26	36	+	12.3636	2.87e-05	0.118	AACAGGAAGTC
ELF5	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	89	-	12.3636	2.87e-05	0.118	AACAGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12.4789	2.87e-05	0.104	GCCGGAAATG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12.4789	2.87e-05	0.104	GCCGGAAATG
ETV3	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12.4789	2.87e-05	0.104	GCCGGAAATG
ETV3	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12.4789	2.87e-05	0.104	GCCGGAAATG
ETV3	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12.4789	2.87e-05	0.104	GCCGGAAATG
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	23	34	+	12.4082	2.87e-05	0.0857	CCCCTCCAGGCA
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	92	-	12.4082	2.87e-05	0.0857	CCCCTCCAGGCA
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	59	77	+	12.0645	2.87e-05	0.671	TGAACCCAAGTAAATCCCT
NFYA	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	23	40	-	11.1829	2.87e-05	0.109	GTGCCTTTGATTGGCTCT
NFYA	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	75	92	+	11.1829	2.87e-05	0.109	GTGCCTTTGATTGGCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	21	32	-	12.25	2.87e-05	0.0232	GCCACTCCCAAC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	21	32	-	12.25	2.87e-05	0.0232	GCCACTCCCAAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	27	40	+	10.9483	2.87e-05	0.0254	TGCCTCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	27	40	+	10.9483	2.87e-05	0.0254	TGCCTCGCCCCTTC
ESR2	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	56	70	+	12.1923	2.87e-05	0.426	AAGTCAGCTTGCCTC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	82	96	+	12.1923	2.87e-05	0.426	ATGTCAGGATAACCT
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	82	96	+	12.1923	2.87e-05	0.426	ATGTCAGGATAACCT
Barhl1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	82	91	+	9.9434	2.87e-05	1	TCTAATTGCC
Barhl1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	82	91	+	9.9434	2.87e-05	1	TCTAATTGCC
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	40	54	+	12.1081	2.87e-05	0.149	CTGGGGGAGGGGCTA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	28	42	-	12.1081	2.87e-05	0.149	CTGGGGGAGGGGCTA
Klf1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	48	58	-	12.5303	2.87e-05	0.0428	GCACACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	108	-	12.5303	2.87e-05	0.0428	CGTCACACCCT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	27	46	+	6.45872	2.87e-05	0.0475	AACCCACACACCCAAGGAGG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	27	46	+	6.45872	2.87e-05	0.0475	AACCCACACACCCAAGGAGG
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	+	9.46939	2.87e-05	0.11	CATTACGTAATT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	21	31	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	21	31	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	51	61	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	57	67	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	57	67	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	57	67	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	48	58	-	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	54	64	-	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	54	64	-	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	54	64	-	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	73	83	+	11.3621	2.87e-05	0.0681	CCTCCCCCGCA
ATF7	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	79	92	-	9.78571	2.87e-05	0.136	TGATGGCGTCACTG
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	-	11.7347	2.87e-05	0.597	GTTGCACAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	-	11.7347	2.87e-05	0.597	GTTGCACAAC
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	+	11.7347	2.87e-05	0.597	GTTGCACAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	+	11.7347	2.87e-05	0.597	GTTGCACAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	+	11.7347	2.87e-05	0.597	GTTGCACAAC
INSM1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	40	51	+	12.1429	2.87e-05	0.146	TGGCTGGGGTAA
INSM1	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	40	51	+	12.1429	2.87e-05	0.146	TGGCTGGGGTAA
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	35	44	-	11.6463	2.87e-05	0.488	CCAATCACAC
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	83	92	-	11.6463	2.87e-05	0.488	CCAATCTCTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	83	92	-	11.6463	2.87e-05	0.488	CCAATCTCTG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	83	92	-	11.6463	2.87e-05	0.488	CCAATCTCTG
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	83	92	-	11.6463	2.87e-05	0.488	CCAATCTCTG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	56	66	-	12.6066	2.87e-05	0.0441	GCGGAAGTGTC
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	63	77	-	12	2.87e-05	0.365	AAGACCAAGGACACA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	26	+	12	2.87e-05	0.0149	CCCCCGCCCTCATC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	12	25	-	12	2.87e-05	0.0149	GCTCCGCTCCCTCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	12	25	-	12	2.87e-05	0.0149	GCTCCGCTCCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	40	+	12	2.87e-05	0.0149	GCCCCACCCTCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	40	+	12	2.87e-05	0.0149	GCCCCACCCTCACA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	41	+	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	41	+	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	29	42	-	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	29	42	-	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	86	+	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	74	87	-	12	2.87e-05	0.0149	GCTCCGCCCCTTCG
EGR1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	75	88	-	12	2.87e-05	0.0149	GCCCCACCCTCACA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	63	77	-	11.5758	2.87e-05	0.258	GCCTGTGACTCAGGA
Nfe2l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	63	77	-	11.5758	2.87e-05	0.258	GCCTGTGACTCAGGA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	+	6.2459	2.87e-05	0.598	TGACAGCCGTGA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	+	6.2459	2.87e-05	0.598	TGACAGCCGTGA
NOTO	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.58	2.87e-05	1	CCTAATTAGA
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	13	23	-	12.9796	2.87e-05	0.0904	TCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	13	23	-	12.9796	2.87e-05	0.0904	TCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	13	23	-	12.9796	2.87e-05	0.0904	TCCACGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	13	23	-	12.9796	2.87e-05	0.0904	TCCACGTGACC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	86	-	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	86	-	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	46	+	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	47	+	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	47	+	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	58	+	12.9796	2.87e-05	0.0904	GTCACGTGACG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	58	+	12.9796	2.87e-05	0.0904	GTCACGTGACG
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	43	54	+	11.1803	2.87e-05	0.0846	CGCCCGGAAGTT
ELF4	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	96	107	+	11.1803	2.87e-05	0.0846	GAGCAGGAAGTG
ELF4	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	19	-	11.1803	2.87e-05	0.0846	GAGCAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	72	-	11.1803	2.87e-05	0.0846	CGCCCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	72	-	11.1803	2.87e-05	0.0846	CGCCCGGAAGTT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	58	70	-	12.3443	2.87e-05	0.359	CTGTCTCGCTCAC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	86	98	-	12.3443	2.87e-05	0.359	CTGTCTCGCTCAC
CEBPB	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	+	12.3	2.87e-05	0.744	GTGGCGCAAC
Ar	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	+	9.13793	2.87e-05	0.882	AGGAACATGGTGTTTAC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	30	44	+	10.541	2.87e-05	0.0451	AGCCACACCCAGGAG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	25	39	-	10.541	2.87e-05	0.0451	AGCCACACCCAGGAG
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	28	39	-	12.0517	2.87e-05	0.33	GCGACCACCGAT
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	28	39	-	12.0517	2.87e-05	0.33	GCGACCACCGAT
GLI2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	76	87	+	12.0517	2.87e-05	0.33	GCGACCACCGAT
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	95	106	-	12.0517	2.87e-05	0.33	GCGCCCACACGC
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	95	106	-	12.0517	2.87e-05	0.33	GCGCCCACACGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	+	12.7234	2.87e-05	0.173	AGTGACTCACT
Myb	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	17	26	+	13.2623	2.88e-05	0.89	ACAACTGTCA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	70	81	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	70	81	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	70	81	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	70	81	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	77	88	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	103	114	-	12.3793	2.88e-05	0.365	GCGCCCCCCGCC
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	80	90	-	12.2	2.88e-05	0.25	CTTCCTGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	80	90	-	12.2	2.88e-05	0.25	CTTCCTGGAAT
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	100	110	-	12.2	2.88e-05	0.25	CTTCCTGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	100	110	-	12.2	2.88e-05	0.25	CTTCCTGGAAT
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	3	15	-	5.40816	2.88e-05	0.233	AGGGATTTCCCCA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	5	17	+	5.40816	2.88e-05	0.233	AGGGATTTCCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	5	17	+	5.40816	2.88e-05	0.233	AGGGATTTCCCCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	22	41	-	6.44954	2.88e-05	0.0475	CCCCAACGCACGCGCACTCA
RREB1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	56	75	-	6.44954	2.88e-05	0.0475	CCCCAACGCACGCGCACTCA
RREB1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	40	59	+	6.44954	2.88e-05	0.0475	CCCCAACGCACGCGCACTCA
ALX3	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	10.8317	2.88e-05	1	TCTAATTAGG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	6	16	+	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	6	16	+	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	12	22	+	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	39	49	-	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	39	49	-	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	43	53	-	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	62	72	+	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	69	79	+	12.5962	2.88e-05	0.00958	GTCCCGCCTTC
SP1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	99	109	-	12.5962	2.88e-05	0.00958	TTCCCTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	28	42	+	12.1379	2.88e-05	0.00847	CTCCCTCCCTCACCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	28	42	+	12.1379	2.88e-05	0.00847	CTCCCTCCCTCACCG
SP2	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	35	49	+	12.1379	2.88e-05	0.00847	ACCCCGCCCACAAGC
SP2	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	49	63	+	12.1379	2.88e-05	0.00847	CGCCCTCCCCGCGCC
SP2	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	5	19	-	12.1379	2.88e-05	0.00847	TCCCCTCCCCTCTAG
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	20	34	-	12.1379	2.88e-05	0.00847	CCCCCTCCCCTTAGT
SP2	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	52	66	-	12.1379	2.88e-05	0.00847	CGCCCTCCCCGCGCC
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	97	110	-	8.07143	2.88e-05	0.365	TGCCCGGAAGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	97	110	-	8.07143	2.88e-05	0.365	TGCCCGGAAGCCAA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	8	18	-	12.2602	2.88e-05	0.016	AGCACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	8	18	-	12.2602	2.88e-05	0.016	AGCACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	8	18	-	12.2602	2.88e-05	0.016	AGCACGCCCCC
YY2	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	70	80	+	12.6515	2.88e-05	0.269	GGTCGCCATTG
YY2	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	99	109	-	12.6515	2.88e-05	0.269	CACCGCCATGT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	26	39	+	8.16327	2.88e-05	0.0647	GGGACCATGTGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	70	83	-	8.16327	2.88e-05	0.0647	GAGTGCGAGGGGGA
ERF	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.4857	2.88e-05	0.0871	ACCGGAAGGA
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	27	40	-	4.21212	2.88e-05	0.138	CGCTTACGTCATCA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	27	40	-	4.21212	2.88e-05	0.138	CGCTTACGTCATCA
NFIL3	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	50	60	+	13.1111	2.88e-05	1	TTACGTAATTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	15	25	+	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	15	25	+	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	29	39	-	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	29	39	-	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	29	39	-	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	29	39	-	12.1379	2.88e-05	0.0129	GCCACACCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	57	67	-	12.1379	2.88e-05	0.0129	GAACCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	57	67	-	12.1379	2.88e-05	0.0129	GAACCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	64	74	-	12.1379	2.88e-05	0.0129	GCCCCACCCAT
NR2F1	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	28	40	-	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
NR2F1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	75	87	+	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
NR2F1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	75	87	+	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
NR2F1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	75	87	+	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
NR2F1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	75	87	+	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
NR2F1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	75	87	+	12.7755	2.88e-05	0.367	ACAGGGTCACAGG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	22	37	+	11.8	2.88e-05	0.0374	GCCCGCCGACGCGCAC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	+	12.4727	2.88e-05	0.0893	AGCCCGCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	+	12.4727	2.88e-05	0.0893	AGCCCGCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	+	12.4727	2.88e-05	0.0893	GGCCCCGGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	+	12.4727	2.88e-05	0.0893	GGCCCCGGGGCT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	92	103	+	12.4727	2.88e-05	0.0893	CGCCCTGAGCCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	26	37	-	12.4727	2.88e-05	0.0893	CGCCCTGAGCCA
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	-	12.4727	2.88e-05	0.0893	AGCCCGCGGGGA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	-	12.4727	2.88e-05	0.0893	GGCCCCGGGGCT
Arx	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	66	82	+	12.4524	2.88e-05	1	GAAGATTAATTAACAGA
PAX5	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	75	93	-	12.0161	2.88e-05	0.137	CGGTGCAACAGAGTAAGGC
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	2	13	+	12.1327	2.88e-05	0.146	GGGCTGGGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	2	13	+	12.1327	2.88e-05	0.146	GGGCTGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	65	76	-	12.1327	2.88e-05	0.146	GGGCTGGGGCCG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	56	69	-	12.5455	2.88e-05	0.0405	TGGCCCAAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	56	69	-	12.5455	2.88e-05	0.0405	TGGCCCAAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	56	69	-	12.5455	2.88e-05	0.0405	TGGCCCAAGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	46	59	+	12.5455	2.88e-05	0.0405	TGGCCCAAGGCCTG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	55	67	-	10.5517	2.88e-05	0.127	GCGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	55	67	-	10.5517	2.88e-05	0.127	GCGCCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	55	67	-	10.5517	2.88e-05	0.127	GCGCCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	55	67	-	10.5517	2.88e-05	0.127	GCGCCGGAAGTGA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	+	12.3878	2.89e-05	0.0857	GGCCCCGGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	+	12.3878	2.89e-05	0.0857	GGCCCCGGGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	-	12.3878	2.89e-05	0.0857	GGCCCCGGGGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	25	-	8.85106	2.89e-05	0.0959	ACCCCCCCGCGGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	19	38	+	6.44037	2.89e-05	0.0475	CACCCCCCCGCCAACAGCAC
RREB1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	42	61	+	6.44037	2.89e-05	0.0475	CCCGCCCCCAACTCCCCCGG
ETV4	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.569	2.89e-05	0.0999	AGCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.569	2.89e-05	0.0999	AGCGGAAGTG
HINFP	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	28	39	+	12.3182	2.89e-05	0.109	GGCCGTCCGCAG
HINFP	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	76	87	-	12.3182	2.89e-05	0.109	GGCCGTCCGCAG
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	29	39	-	12.5714	2.89e-05	0.125	GTCATATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	29	39	-	12.5714	2.89e-05	0.125	GTCATATGACC
USF1	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	43	53	+	12.5714	2.89e-05	0.125	GTCATATGACC
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	9	20	+	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	9	20	+	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	9	20	+	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	9	20	+	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	27	38	-	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	77	88	+	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	95	106	-	6.32759	2.89e-05	0.189	AGGCCCGTGTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	10	24	-	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	10	24	-	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	10	24	-	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	10	24	-	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	10	24	-	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	53	67	+	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	53	67	+	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	53	67	+	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	53	67	+	12.0991	2.89e-05	0.149	GTAGGTGAAAGTTCT
SP1	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	38	48	+	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	46	56	-	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	59	69	+	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	59	69	+	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	65	75	+	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	61	71	-	12.5769	2.89e-05	0.00958	CGCCCACCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	67	77	-	12.5769	2.89e-05	0.00958	CGCCCACCCCC
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	+	12.1803	2.89e-05	0.064	CGCCCCCACGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	+	12.1803	2.89e-05	0.064	CGCCCCCACGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	+	12.1803	2.89e-05	0.064	CGCCCCCACGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	-	12.1803	2.89e-05	0.064	GGCCTCTGGGGCG
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	-	12.1803	2.89e-05	0.064	CGCCCCCACGGCG
CREB3L1	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	35	48	+	10.6818	2.89e-05	0.253	CAGACACGTCAGCC
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	25	38	-	10.6818	2.89e-05	0.253	AGTCCACGTCAGCG
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	77	90	+	10.6818	2.89e-05	0.253	AGTCCACGTCAGCG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	67	80	-	10.6818	2.89e-05	0.253	CAGACACGTCAGCC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	67	80	-	10.6818	2.89e-05	0.253	CAGACACGTCAGCC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	67	80	-	10.6818	2.89e-05	0.253	CAGACACGTCAGCC
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	67	80	-	10.6818	2.89e-05	0.253	CAGACACGTCAGCC
Sox1	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	87	101	+	7	2.89e-05	1	CACAAAAAGAGTGTT
Sox1	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	58	72	-	7	2.89e-05	1	CACAAAAAGAGTGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	41	52	+	11.1639	2.89e-05	0.0846	AGCCAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	41	52	+	11.1639	2.89e-05	0.0846	AGCCAGGAAGTG
ELF4	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	63	74	+	11.1639	2.89e-05	0.0846	ATCCCGGATGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	69	80	+	11.1639	2.89e-05	0.0846	AGCCAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	69	80	+	11.1639	2.89e-05	0.0846	AGCCAGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	52	-	11.1639	2.89e-05	0.0846	ATCCCGGATGTG
ZIC3	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	82	96	+	10.2714	2.89e-05	0.101	GCCCACCCTCTGCGG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	7	21	-	10.2714	2.89e-05	0.101	TCCCTCCCTCTGCGT
ZIC3	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	19	33	-	10.2714	2.89e-05	0.101	GCCCACCCTCTGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	10	24	-	11.9273	2.89e-05	0.0985	GCCCCCCTGGAGAGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	10	24	-	11.9273	2.89e-05	0.0985	GCCCCCCTGGAGAGG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	32	46	-	11.9273	2.89e-05	0.0985	CGCGCCCTGCCGCGC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	74	+	11.9273	2.89e-05	0.0985	CGCCCCCTGCCACGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	67	81	+	11.9273	2.89e-05	0.0985	CGCGCCCTGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	93	107	+	11.9273	2.89e-05	0.0985	GCCCCCCTGGAGAGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	93	107	+	11.9273	2.89e-05	0.0985	GCCCCCCTGGAGAGG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	27	40	+	12.8654	2.89e-05	0.182	AGGCCATGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	67	80	-	12.8654	2.89e-05	0.182	AGGCCATGACTCAC
GSC2	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	32	41	+	11.4915	2.89e-05	1	CTTAATCCCT
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	-	12.0517	2.89e-05	0.0554	TCCCCGCCGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	+	12.0517	2.89e-05	0.0554	TCCCCGCCGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	+	12.0517	2.89e-05	0.0554	TCCCCGCCGGGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	+	12.0517	2.89e-05	0.0554	TCCCCGCCGGGGT
KLF5	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	74	83	-	12.8776	2.89e-05	0.0135	GTCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	23	32	+	12.8776	2.89e-05	0.0135	GTCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	23	32	+	12.8776	2.89e-05	0.0135	GTCCCACCCT
KLF5	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	32	41	+	12.8776	2.89e-05	0.0135	GTCCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	81	90	+	12.8776	2.89e-05	0.0135	GTCCCACCCT
RXRG	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	41	-	4.93617	2.89e-05	0.48	AGGGTCAGAGGCCG
RXRG	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	74	87	+	4.93617	2.89e-05	0.48	AGGGTCAGAGGCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	7	18	+	12.2368	2.89e-05	0.0233	GCCCCGCCCGCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	7	18	+	12.2368	2.89e-05	0.0233	GCCCCGCCCGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	60	71	+	11.3455	2.89e-05	0.0967	GAGCCGGAAGCC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	62	82	+	10.9839	2.89e-05	0.157	ATTTCCTTTTTGTTTTTGTTG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	62	82	+	10.9839	2.89e-05	0.157	ATTTCCTTTTTGTTTTTGTTG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	74	85	+	9.44898	2.89e-05	0.11	GATGACGCCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	74	85	+	9.44898	2.89e-05	0.11	GATGACGCCACG
ETV6	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	12.7115	2.89e-05	0.0831	AGCGGAAGCA
ETV6	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	12.7115	2.89e-05	0.0831	AGCGGAAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	24	38	-	11.5606	2.89e-05	0.258	GGAAATGACACAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	24	38	-	11.5606	2.89e-05	0.258	GGAAATGACACAGCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	24	38	-	11.5606	2.89e-05	0.258	GGAAATGACACAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	24	38	-	11.5606	2.89e-05	0.258	GGAAATGACACAGCT
RXRA::VDR	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	70	84	+	8.52294	2.89e-05	1	GGGGCGAGAGGTTCG
RXRA::VDR	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	97	111	+	8.52294	2.89e-05	1	GGGGCGAGAGGTTCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	39	59	-	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	39	59	-	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	50	70	-	11.2653	2.89e-05	0.012	GGGAGCGGAGCGGGGGGATGA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	70	90	-	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	12	32	+	11.2653	2.89e-05	0.012	GGGGGTGGGCCTGGAGGGGTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	12	32	+	11.2653	2.89e-05	0.012	GGGGGTGGGCCTGGAGGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	12	32	+	11.2653	2.89e-05	0.012	GGGGGTGGGCCTGGAGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	12	32	+	11.2653	2.89e-05	0.012	GGGGGTGGGCCTGGAGGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	25	45	+	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	25	45	+	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	56	76	+	11.2653	2.89e-05	0.012	GAGGACGAGGGGGAGGGGGAA
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	88	97	+	12.0484	2.89e-05	0.888	TACATTCCTA
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	88	97	+	12.0484	2.89e-05	0.888	TACATTCCTA
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	19	31	-	11.697	2.89e-05	0.641	GTTAAACTTTAAC
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	19	31	-	11.697	2.89e-05	0.641	GTTAAACTTTAAC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	92	102	+	12.3793	2.89e-05	0.215	GGCTGTGGCCT
FOXC2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	56	67	-	12.4455	2.89e-05	1	TCTGTAAACAAA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	4	17	+	8.14286	2.89e-05	0.0647	GGGGCTGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	4	17	+	8.14286	2.89e-05	0.0647	GGGGCTGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	40	53	-	8.14286	2.89e-05	0.0647	GTGGGCCTCGCGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	40	53	-	8.14286	2.89e-05	0.0647	GTGGGCCTCGCGGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	-	12.4909	2.89e-05	0.0548	CGCCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	+	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	+	12.6727	2.89e-05	0.063	CGCCGGAGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	+	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	+	12.6727	2.89e-05	0.063	CGCCGGAGGCC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	-	12.6727	2.89e-05	0.063	CGCCGGAGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	-	12.6727	2.89e-05	0.063	CGCCGGAGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	-	12.6727	2.89e-05	0.063	CGCCGGAGGCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	-	12.6727	2.89e-05	0.063	AGCCCGGGGCG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	2	20	+	12.0484	2.89e-05	0.671	TGCCCGAAGTTGGCCTCGG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	12	30	-	12.0484	2.89e-05	0.671	TCCCCTGCGGTGACCTAGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	12	30	-	12.0484	2.89e-05	0.671	TCCCCTGCGGTGACCTAGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	39	57	-	12.0484	2.89e-05	0.671	TGCCCGAAGTTGGCCTCGG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	39	57	-	12.0484	2.89e-05	0.671	TGCCCGAAGTTGGCCTCGG
Nr1h3::Rxra	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	58	76	+	12.0484	2.89e-05	0.671	TGCCCGAAGTTGGCCTCGG
Nr1h3::Rxra	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	95	113	-	12.0484	2.89e-05	0.671	TGCCCGAAGTTGGCCTCGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	13	30	+	-10.3289	2.9e-05	0.0333	TGAAGTAAAGCAGGAAAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	30	47	+	-10.3289	2.9e-05	0.0333	GGGCGGAGGCGCGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	30	47	+	-10.3289	2.9e-05	0.0333	GGGCGGAGGCGCGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	4	21	-	-10.3289	2.9e-05	0.0333	GGAGTGGGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	4	21	-	-10.3289	2.9e-05	0.0333	GGAGTGGGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	11	28	-	-10.3289	2.9e-05	0.0333	TGAAGTAAAGCAGGAAAT
Rarg(var.2)	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	96	112	+	-1.72727	2.9e-05	1	GAGGTCCAGAGAGGACC
Rarg(var.2)	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	3	19	-	-1.72727	2.9e-05	1	GAGGTCCAGAGAGGACC
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	-	12.9623	2.9e-05	1	TGTGACGTAACA
JUN	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	29	41	-	12.4694	2.9e-05	0.301	GTTGTGATGTCAC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	30	46	+	6.81818	2.9e-05	0.02	CCTGCCCCTCCCCTATC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	30	46	+	6.81818	2.9e-05	0.02	CCTGCCCCTCCCCTATC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	30	46	+	6.81818	2.9e-05	0.02	CCTGCCCCTCCCCTATC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	30	46	+	6.81818	2.9e-05	0.02	CCTGCCCCTCCCCTATC
SP4	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	65	81	-	6.81818	2.9e-05	0.02	GTGGAGCCGCCCCCTGC
SP4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	69	85	-	6.81818	2.9e-05	0.02	CCTGCCCCTCCCCTATC
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	79	90	-	12.1224	2.9e-05	0.146	TGGCTGGGGCTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	79	90	-	12.1224	2.9e-05	0.146	TGGCTGGGGCTG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	79	90	-	12.1224	2.9e-05	0.146	TGGCTGGGGCTG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	79	90	-	12.1224	2.9e-05	0.146	TGGCTGGGGCTG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	25	39	-	9	2.9e-05	0.033	CCCCGCCCCGGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	25	39	-	9	2.9e-05	0.033	CCCCGCCCCGGCCCC
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	-	11.6212	2.9e-05	0.182	CGTCTCCATGACAATA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	-	11.6212	2.9e-05	0.182	CGTCTCCATGACAATA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	-	11.6212	2.9e-05	0.182	CGTCTCCATGACAATA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	-	11.6212	2.9e-05	0.182	CGTCTCCATGACAATA
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	11	+	12.5769	2.9e-05	0.0703	AGCCTCAGGGG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	94	110	-	4.12727	2.9e-05	0.463	GGTCCTGCTCCGCCGCC
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	94	110	-	4.12727	2.9e-05	0.463	GGTCCTGCTCCGCCGCC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	94	110	-	4.12727	2.9e-05	0.463	GGTCCTGCTCCGCCGCC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	87	97	-	13.2653	2.9e-05	0.123	GGCAGCTGAGC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	87	97	-	13.2653	2.9e-05	0.123	GGCAGCTGAGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	8	18	-	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	8	18	-	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	8	18	-	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	8	18	-	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	8	18	-	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	47	57	+	12.5902	2.9e-05	0.0441	CCGGAACTGCC
TFEB	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	12.5385	2.9e-05	0.123	GACACGTGAT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	12.5385	2.9e-05	0.123	GACACGTGAT
MAFG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	11	31	+	11.4082	2.9e-05	0.929	GTAGTGCTGAGTGGGGAAAAA
MAFG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	11	31	+	11.4082	2.9e-05	0.929	GTAGTGCTGAGTGGGGAAAAA
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	60	71	+	12.3065	2.9e-05	0.281	GCGCCCACCCCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	59	70	+	11.1475	2.9e-05	0.0846	TAGCAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	59	70	+	11.1475	2.9e-05	0.0846	TAGCAGGAAGTG
ESR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	58	74	+	3.24242	2.9e-05	0.424	GGGGTCGCCGGGGCCCG
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	58	74	+	3.24242	2.9e-05	0.424	GGGGTCGCCGGGGCCCG
ESR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	58	74	+	3.24242	2.9e-05	0.424	GGGGTCGCCGGGGCCCG
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	58	74	+	3.24242	2.9e-05	0.424	GGGGTCGCCGGGGCCCG
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	+	12.3333	2.9e-05	1	AACAGCTGCC
MYF6	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	-	12.3333	2.9e-05	1	AACAGCTGCC
JUND	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	-	12.7021	2.9e-05	0.173	AATGACTCAGC
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	3	13	-	13.1636	2.9e-05	0.146	AAATGAGTCAG
FOSL2	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	35	45	-	13.1636	2.9e-05	0.146	AAGTGAGTCAG
FOSL2	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	36	46	-	13.1636	2.9e-05	0.146	AAGTGAGTCAG
FOSL2	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	69	79	+	13.1636	2.9e-05	0.146	AAGTGAGTCAG
FOSL2	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	70	80	+	13.1636	2.9e-05	0.146	AAGTGAGTCAG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	12.4727	2.9e-05	0.0875	ACCGGATATG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	12.4727	2.9e-05	0.0875	ACCGGATATG
ETV1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	12.4727	2.9e-05	0.0875	CCCGGAAGTA
ETV1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	12.4727	2.9e-05	0.0875	CCCGGAAGTA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	-	12.7091	2.9e-05	0.0506	CGCCCGGGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	-	12.7091	2.9e-05	0.0506	AGCCCGCGGCT
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	+	13.1515	2.9e-05	1	GGCATATGCT
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	+	13.1515	2.9e-05	1	GGCATATGCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	23	36	+	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	13	26	-	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	13	26	-	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	13	26	-	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	13	26	-	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	13	26	-	11.9808	2.9e-05	0.015	CAGCCACCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	14	27	-	11.9808	2.9e-05	0.015	GCTCCTCCGACGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	14	27	-	11.9808	2.9e-05	0.015	GCTCCTCCGACGCA
EGR1	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	26	39	-	11.9808	2.9e-05	0.015	CAGCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	48	61	-	11.9808	2.9e-05	0.015	ACCCCGCTCCCACA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	48	61	-	11.9808	2.9e-05	0.015	ACCCCGCTCCCACA
Hes1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	10.5455	2.9e-05	0.0758	CCCACGTGTC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	10.5455	2.9e-05	0.0758	CCCACGTGTC
Hes1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	10.5455	2.9e-05	0.0758	CCCACGTGTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	29	43	+	12.1207	2.9e-05	0.00851	CTCCCGCCCCGGGAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	40	54	+	12.1207	2.9e-05	0.00851	TTCCCACCCACTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	40	54	+	12.1207	2.9e-05	0.00851	TTCCCACCCACTTCC
SP2	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	68	82	+	12.1207	2.9e-05	0.00851	CCTCCTCCTCCCGGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	72	86	+	12.1207	2.9e-05	0.00851	AGCCCGCCCTCCCAT
SP2	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	33	47	-	12.1207	2.9e-05	0.00851	CCTCCTCCTCCCGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	35	49	-	12.1207	2.9e-05	0.00851	ACCCTGCCCCCCCAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	35	49	-	12.1207	2.9e-05	0.00851	ACCCTGCCCCCCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	53	67	-	12.1207	2.9e-05	0.00851	GCCCTGCCCCTCTGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	53	67	-	12.1207	2.9e-05	0.00851	GCCCTGCCCCTCTGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	53	67	-	12.1207	2.9e-05	0.00851	GCCCTGCCCCTCTGT
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	85	99	-	12.1207	2.9e-05	0.00851	TGCCCGCCCTTCGCA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	27	46	+	6.42202	2.9e-05	0.0475	CCCCCATTCCACCCCAGCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	27	46	+	6.42202	2.9e-05	0.0475	CCCCCATTCCACCCCAGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	27	46	+	6.42202	2.9e-05	0.0475	CCCCCATTCCACCCCAGCCC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	69	82	-	11.7931	2.9e-05	0.173	GGCGCTAGGGCAAC
TCF4	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	3	12	+	13.1837	2.9e-05	0.422	TACACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	84	93	-	13.1837	2.9e-05	0.422	TACACCTGCG
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	84	93	-	13.1837	2.9e-05	0.422	TACACCTGCG
STAT3	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	13	23	+	12.5918	2.9e-05	0.196	CTGCTGGGAAC
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	54	64	+	12.5918	2.9e-05	0.196	CTGCTGGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	54	64	+	12.5918	2.9e-05	0.196	CTGCTGGGAAC
STAT3	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	67	77	-	12.5918	2.9e-05	0.196	CTGCTGGGAAC
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	102	112	+	12.5918	2.9e-05	0.196	CTGCTGGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	102	112	+	12.5918	2.9e-05	0.196	CTGCTGGGAAC
ELK1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.1489	2.9e-05	0.0683	AGCGGAAGTA
IRF7	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	9	22	-	10.7581	2.9e-05	0.623	AAGAAAGCAAAAGA
IRF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	61	74	-	10.7581	2.9e-05	0.623	AAGAAAGCAAAAGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	31	44	-	10.9138	2.9e-05	0.0256	AGTCCCGCCTCCTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	31	44	-	10.9138	2.9e-05	0.0256	AGTCCCGCCTCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	31	44	-	10.9138	2.9e-05	0.0256	AGTCCCGCCTCCTT
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	3	20	+	12.4545	2.9e-05	0.915	GTTATCTGCGGGGGGAAG
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	57	74	-	12.4545	2.9e-05	0.915	GTTATCTGCGGGGGGAAG
RXRG	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	15	-	4.91489	2.9e-05	0.48	GGGGTGAAGGGCCA
RXRG	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	66	-	4.91489	2.9e-05	0.48	GGGGTGAAGGGCCA
RXRG	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	49	62	+	4.91489	2.9e-05	0.48	GGGGTGAAGGGCCA
RXRG	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	100	113	+	4.91489	2.9e-05	0.48	GGGGTGAAGGGCCA
CDX1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	80	88	-	11.6792	2.9e-05	1	GCAATAAAC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	12	25	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	12	25	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	12	25	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	12	25	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	58	71	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	58	71	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	58	71	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	58	71	+	8.12245	2.91e-05	0.0647	CGGGCGTTCGGGGG
Creb3l2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	13	+	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	6	14	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	28	+	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	21	29	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	47	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	32	40	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	48	+	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	32	40	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	53	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	53	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	53	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	41	49	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	62	+	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	74	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	62	70	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	67	75	-	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	68	76	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	68	76	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	68	76	-	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	94	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	87	95	-	13.3596	2.91e-05	0.191	GTCACGTGT
Creb3l2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	109	+	13.3596	2.91e-05	0.191	GACACGTGA
Creb3l2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	102	110	-	13.3596	2.91e-05	0.191	GTCACGTGT
ZNF740	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	42	51	+	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	63	72	+	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	26	35	-	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	26	35	-	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	26	35	-	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	26	35	-	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	64	73	-	12.0917	2.91e-05	0.047	CCACCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	64	73	-	12.0917	2.91e-05	0.047	CCACCCCCAT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	26	35	-	12.5286	2.91e-05	0.174	GCCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	26	35	-	12.5286	2.91e-05	0.174	GCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	88	97	+	12.5286	2.91e-05	0.174	GCCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	88	97	+	12.5286	2.91e-05	0.174	GCCAGCTGCC
Nr2f6	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	15	-	10.5152	2.91e-05	0.268	GGGGTGAAGGGCCA
Nr2f6	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	66	-	10.5152	2.91e-05	0.268	GGGGTGAAGGGCCA
Nr2f6	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	49	62	+	10.5152	2.91e-05	0.268	GGGGTGAAGGGCCA
Nr2f6	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	100	113	+	10.5152	2.91e-05	0.268	GGGGTGAAGGGCCA
NFKB2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	2	14	+	10.6667	2.91e-05	0.231	GGGGGAATCCCTC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	101	113	-	10.6667	2.91e-05	0.231	GGGGGAATCCCTC
Myc	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	95	104	-	13.3636	2.91e-05	0.363	CCACGTGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	22	31	+	12.3265	2.91e-05	0.0146	GGGGTGTGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	22	31	+	12.3265	2.91e-05	0.0146	GGGGTGTGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	33	42	-	12.3265	2.91e-05	0.0146	GGGGTGTGGG
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	33	42	-	12.3265	2.91e-05	0.0146	GGGGTGTGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	72	89	-	-10.3421	2.91e-05	0.0334	GGGAGGAGAGAAGGCACT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	72	89	-	-10.3421	2.91e-05	0.0334	GGGAGGAGAGAAGGCACT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	30	39	+	10.1613	2.91e-05	0.043	GGCGCGCGAG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	30	39	+	10.1613	2.91e-05	0.043	GGCGCGCGAG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	30	39	-	10.1613	2.91e-05	0.043	CTCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	30	39	-	10.1613	2.91e-05	0.043	CTCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	39	48	+	10.1613	2.91e-05	0.043	CTCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	39	48	+	10.1613	2.91e-05	0.043	CTCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	46	55	+	10.1613	2.91e-05	0.043	CGCGCGCGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	39	48	-	10.1613	2.91e-05	0.043	GGCGCGCGAG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	39	48	-	10.1613	2.91e-05	0.043	GGCGCGCGAG
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	46	55	-	10.1613	2.91e-05	0.043	GTCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	60	69	+	10.1613	2.91e-05	0.043	GTCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	63	72	+	10.1613	2.91e-05	0.043	CTCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	60	69	-	10.1613	2.91e-05	0.043	CGCGCGCGAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	63	72	-	10.1613	2.91e-05	0.043	GGCGCGCGAG
SREBF2	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	37	46	-	12.7753	2.91e-05	0.871	ATGGCCTGAC
TP73	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	-	10.6923	2.91e-05	0.609	CACATGTGCGAGCATGAC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	19	29	+	11.3276	2.91e-05	0.0686	TCGCCTACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	19	29	+	11.3276	2.91e-05	0.0686	TCGCCTACGCC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	11	21	-	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	25	35	+	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	25	35	+	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	25	35	+	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	25	35	+	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	17	27	-	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	90	100	-	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	90	100	-	12.8621	2.91e-05	0.0451	GAGCGGGAGGA
ELF5	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	34	44	+	12.3455	2.91e-05	0.118	TGCCGGAAGTT
ELF5	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	81	-	12.3455	2.91e-05	0.118	TGCCGGAAGTT
ELF5	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	92	-	12.3455	2.91e-05	0.118	TGCCGGAAGTT
HOXA2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	+	10.8491	2.91e-05	1	CGTCATTAGC
HOXA2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	+	10.8491	2.91e-05	1	CGTCATTAGC
HOXA2	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	+	10.8491	2.91e-05	1	CGTCATTAGC
HOXA2	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	-	10.8491	2.91e-05	1	CGTCATTAGC
HOXA2	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	68	77	-	10.8491	2.91e-05	1	CGTCATTACC
HOXA2	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	-	10.8491	2.91e-05	1	CGTCATTAGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	27	46	+	6.41284	2.91e-05	0.0475	CCCCACCCCGCAGCCCACCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	29	48	+	6.41284	2.91e-05	0.0475	ACGCCCCGCACCCGCCCCCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	29	48	+	6.41284	2.91e-05	0.0475	ACGCCCCGCACCCGCCCCCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	29	48	+	6.41284	2.91e-05	0.0475	ACGCCCCGCACCCGCCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	29	48	+	6.41284	2.91e-05	0.0475	ACGCCCCGCACCCGCCCCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	14	30	+	6.8	2.91e-05	0.02	CTTACCACGCCGCCCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	36	52	+	6.8	2.91e-05	0.02	CCCTCCCCGCCCCCCCC
SP4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	70	86	+	6.8	2.91e-05	0.02	GGAGCCCCGCCTCTCGC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	103	+	12.5345	2.91e-05	0.113	CACAGCTGTG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	103	-	12.5345	2.91e-05	0.113	CACAGCTGTG
PAX5	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	1	19	+	12	2.91e-05	0.137	GCACGTACTGAGGCGTGGC
PAX5	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	8	26	+	12	2.91e-05	0.137	GGCGGCGACGGAGCGGGGC
PAX5	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	40	58	-	12	2.91e-05	0.137	CTGATAAGCAGGGCATAAC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr3:171543354..171543468,-__2092.1.0.0	81	99	-	12	2.91e-05	0.137	GTGGTCAGTGCACTGTGAC
PAX5	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	89	107	-	12	2.91e-05	0.137	GGCGGCGACGGAGCGGGGC
Arntl	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	20	29	-	12.6721	2.91e-05	0.183	GATCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	20	29	-	12.6721	2.91e-05	0.183	GATCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	20	29	-	12.6721	2.91e-05	0.183	GATCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	20	29	-	12.6721	2.91e-05	0.183	GATCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	20	29	-	12.6721	2.91e-05	0.183	GATCACGTGG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	57	+	12.6721	2.91e-05	0.183	GATCACGTGG
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	12.0364	2.91e-05	0.0787	AGCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	12.0364	2.91e-05	0.0787	AGCGGAAGTC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	63	72	-	11.9495	2.91e-05	0.165	GGATGGGGGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	63	72	-	11.9495	2.91e-05	0.165	GGATGGGGGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	104	113	+	11.9495	2.91e-05	0.165	GGATGGGGGA
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	43	57	-	8.98276	2.91e-05	0.0331	ACCCGCCCGCGCTGT
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	58	72	+	8.98276	2.91e-05	0.0331	ACCCGCCCGCGCTGT
Stat6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	30	+	12.7241	2.91e-05	0.594	GGTTTCCGGTGAACA
Stat6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	30	+	12.7241	2.91e-05	0.594	GGTTTCCGGTGAACA
Stat6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	17	31	-	12.7241	2.91e-05	0.594	GGTTTCCGGTGAACA
Stat6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	17	31	-	12.7241	2.91e-05	0.594	GGTTTCCGGTGAACA
Stat6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	17	31	-	12.7241	2.91e-05	0.594	GGTTTCCGGTGAACA
ATF7	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	47	60	-	9.74286	2.91e-05	0.138	GAATTACGTAATGT
E2F8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	22	33	+	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	22	33	+	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	22	33	+	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	22	33	+	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	26	37	-	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	26	37	-	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	78	89	+	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
E2F8	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	82	93	-	7.26829	2.91e-05	0.631	TTTCTGGCCAAT
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	28	42	-	11.5455	2.91e-05	0.258	GCACGTGACTCAGGA
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	48	62	-	11.5455	2.91e-05	0.258	GCACGTGACTCAGGA
EGR4	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	17	32	-	11.7818	2.91e-05	0.0374	TTCCTCCGACGCACTG
EGR4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	35	50	+	11.7818	2.91e-05	0.0374	CGCCGCCCACCCCGCC
EGR4	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	35	50	-	11.7818	2.91e-05	0.0374	CCCCGCCCCCTCCATC
EGR4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	65	80	-	11.7818	2.91e-05	0.0374	CGCCGCCCACCCCGCC
EGR4	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	83	98	+	11.7818	2.91e-05	0.0374	TTCCTCCGACGCACTG
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	29	39	+	13.1489	2.91e-05	0.206	TGTGATTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	21	31	-	13.1489	2.91e-05	0.206	TGTGATTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	81	91	-	13.1489	2.91e-05	0.206	TGTGATTCATG
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	93	107	-	12.5211	2.91e-05	0.341	GAGGGGAAAACACAG
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	7	18	+	12.2237	2.92e-05	0.0233	CCCCCCCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	7	18	+	12.2237	2.92e-05	0.0233	CCCCCCCCCCCA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	9	20	+	12.2237	2.92e-05	0.0233	CCCCCCCCCCCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	2	13	-	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	13	24	-	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	45	+	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	45	+	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	26	37	-	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	70	81	-	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	102	+	12.2237	2.92e-05	0.0233	GTCCCGCCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	6	16	+	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	6	16	+	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	62	72	+	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	80	90	+	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	14	24	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	14	24	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	25	35	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	25	35	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	43	53	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	99	109	-	12.2276	2.92e-05	0.0161	CCCACTCCTCC
Foxa2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	89	100	+	12.69	2.92e-05	0.884	TGTTTGCTCAGT
Foxa2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	89	100	+	12.69	2.92e-05	0.884	TGTTTGCTCAGT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	5	15	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	5	15	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	20	30	+	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	20	30	+	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	20	30	+	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	20	30	+	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	35	45	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	41	51	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	41	51	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	41	51	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	67	77	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	67	77	+	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	41	51	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	41	51	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	41	51	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	41	51	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	56	66	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	56	66	-	12.5	2.92e-05	0.0428	CACCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	64	74	-	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	70	80	-	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	70	80	-	12.5	2.92e-05	0.0428	TGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	70	80	-	12.5	2.92e-05	0.0428	TGCCACGCCCC
ELK3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
ELK3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	12.5862	2.92e-05	0.0871	CCCGGAAGTC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	42	56	+	12.4423	2.92e-05	0.107	CTCTCACCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	42	56	+	12.4423	2.92e-05	0.107	CTCTCACCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	42	56	+	12.4423	2.92e-05	0.107	CTCTCACCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	42	56	+	12.4423	2.92e-05	0.107	CTCTCACCCAATCAG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	33	46	+	10.3279	2.92e-05	0.176	CACCCCCTGCCTGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	33	46	+	10.3279	2.92e-05	0.176	CACCCCCTGCCTGG
JUND(var.2)	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	6	20	-	12.5319	2.92e-05	0.311	AGGAATGAGGCAATG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	26	39	+	12.8462	2.92e-05	0.182	TGAAGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	26	39	+	12.8462	2.92e-05	0.182	TGAAGCTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	26	39	+	12.8462	2.92e-05	0.182	TGAAGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	26	39	+	12.8462	2.92e-05	0.182	TGAAGCTGAGTCAC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	38	-	12.3776	2.92e-05	0.0857	AGGCCGAGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	90	-	12.3776	2.92e-05	0.0857	AGGCCGAGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	90	-	12.3776	2.92e-05	0.0857	AGGCCGAGGGCA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	59	73	+	11.9091	2.92e-05	0.0986	AGCCGCCCGCTGGTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	59	73	+	11.9091	2.92e-05	0.0986	AGCCGCCCGCTGGTC
CREB3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	-	11.5714	2.92e-05	0.212	CGGTGACGTCACCG
CREB3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	-	11.5714	2.92e-05	0.212	CGGTGACGTCACCG
CREB3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	28	41	+	11.5714	2.92e-05	0.212	CGGTGACGTCACCG
CREB3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	74	87	+	11.5714	2.92e-05	0.212	CGGTGACGTCACCG
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	37	-	12.2113	2.92e-05	0.214	AGGAAGAGGAAGTG
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	63	-	12.2113	2.92e-05	0.214	AGGAAGAGGAAGTG
Foxd3	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	53	64	-	12.5435	2.92e-05	1	TTTTGTTGGTTT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	1	11	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	1	11	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	3	13	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	3	13	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	8	18	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	8	18	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	12	22	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	12	22	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	13	23	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	13	23	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	13	23	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	13	23	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	18	28	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	19	29	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	22	32	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	23	33	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	23	33	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	28	38	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	28	38	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	28	38	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	30	40	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	32	42	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	32	42	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	32	42	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	33	43	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	33	43	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	33	43	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	33	43	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	33	43	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	35	45	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	35	45	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	35	45	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	35	45	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	35	45	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	36	46	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	43	53	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	59	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	59	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	56	66	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	56	66	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	56	66	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	56	66	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	56	66	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	65	75	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	66	76	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	70	80	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	70	80	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	72	82	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	73	83	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	89	99	+	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	5	15	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	5	15	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	8	18	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	9	19	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	9	19	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	9	19	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	9	19	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	10	20	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	10	20	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	11	21	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	11	21	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	11	21	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	11	21	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	11	21	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	13	23	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	15	25	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	15	25	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	16	26	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	16	26	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	17	27	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	17	27	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	17	27	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	18	28	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	20	30	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	21	31	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	23	33	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	25	35	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	25	35	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	26	36	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	26	36	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	28	38	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	28	38	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	30	40	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	30	40	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	32	42	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	32	42	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	32	42	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	32	42	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	32	42	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	33	43	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	34	44	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	35	45	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	35	45	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	37	47	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	37	47	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	37	47	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	37	47	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	38	48	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	39	49	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	42	52	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	42	52	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	42	52	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	42	52	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	45	55	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	45	55	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	49	59	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	57	67	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	58	68	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	58	68	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	58	68	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	62	72	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	69	79	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	70	80	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	71	81	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	73	83	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	75	85	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	75	85	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	77	87	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
KLF16	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	87	97	-	12.1207	2.92e-05	0.0129	GCCCCGCCCCG
Esrrg	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	104	113	+	12.6122	2.92e-05	0.8	GGAAGGTCAC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	9	19	-	12.1273	2.92e-05	0.225	TACCGGAAGTA
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	73	83	+	12.1273	2.92e-05	0.225	TACCGGAAGTA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	93	103	-	12.8448	2.92e-05	0.0451	GGGCGCGAGAC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	93	103	-	12.8448	2.92e-05	0.0451	GGGCGCGAGAC
Mitf	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	13	+	11.7041	2.92e-05	0.173	TGTCACGTGT
Mitf	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	53	62	+	11.7041	2.92e-05	0.173	TGTCACGTGT
Mitf	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	102	111	-	11.7041	2.92e-05	0.173	TGTCACGTGT
SP1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	24	34	+	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	87	97	+	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	87	97	+	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	87	97	+	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	87	97	+	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
SP1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	81	91	-	12.5577	2.92e-05	0.00968	CTCCCGCCTCT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	20	30	-	12.3621	2.92e-05	0.215	TTTTGTGGTTG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	44	54	+	12.3621	2.92e-05	0.215	TTTTGTGGTTG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	4	24	-	11.2449	2.92e-05	0.012	TGAGGGGGAGTAGGTGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	18	38	-	11.2449	2.92e-05	0.012	GGAGGGAGAAAGGGAGAAAAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	18	38	-	11.2449	2.92e-05	0.012	GGAGGGAGAAAGGGAGAAAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	22	42	-	11.2449	2.92e-05	0.012	GAAGGAGGGCCAGAGGAGCAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	23	43	-	11.2449	2.92e-05	0.012	GGAGGAGAGCCTGGAGGGCAG
ZNF263	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	26	46	-	11.2449	2.92e-05	0.012	GGGGCCGGGGCGGAGAGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	36	56	-	11.2449	2.92e-05	0.012	GGAGTTGGGGGCGGGGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	42	62	-	11.2449	2.92e-05	0.012	AGGGGTGGGAGGCAGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	60	80	-	11.2449	2.92e-05	0.012	CGAGGCAGGAAGGAGGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	60	80	-	11.2449	2.92e-05	0.012	CGAGGCAGGAAGGAGGGAAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	76	96	-	11.2449	2.92e-05	0.012	AAGGGAAGGAAGTAAGGAAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	81	101	-	11.2449	2.92e-05	0.012	AAAGAAGGAACAAGGAGTGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	2	22	+	11.2449	2.92e-05	0.012	AAAGAAGGAACAAGGAGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	35	55	+	11.2449	2.92e-05	0.012	GGAGGAGCCTCTGAGGGAAAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	35	55	+	11.2449	2.92e-05	0.012	GGAGGAGCCTCTGAGGGAAAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	41	61	+	11.2449	2.92e-05	0.012	CGAGGAGGTGCTGGAGGGTGG
ZNF263	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	69	89	+	11.2449	2.92e-05	0.012	GGGGCCGGGGCGGAGAGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	76	96	+	11.2449	2.92e-05	0.012	GGAGGAGACAGAGGCAGGGCT
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	86	106	+	11.2449	2.92e-05	0.012	GGTGGAAGGCGGAAGTAGGAG
NKX3-2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	20	28	-	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	20	28	-	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	20	28	-	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	47	55	-	12.5192	2.92e-05	1	GGCACTTAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	10	18	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	10	18	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	27	35	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	30	38	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	44	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	37	45	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	68	76	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	68	76	-	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	79	87	-	11.6034	2.92e-05	0.225	GTGACTCAC
Nkx3-1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	73	81	+	12.8	2.92e-05	1	ACCACTTAC
NKX3-2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	60	68	+	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	60	68	+	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	60	68	+	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	60	68	+	12.5192	2.92e-05	1	GGCACTTAA
NKX3-2	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	87	95	+	12.5192	2.92e-05	1	GGCACTTAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	8	16	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	8	16	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	17	25	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	23	31	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	31	39	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	31	39	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	34	42	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	42	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	36	44	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	36	44	+	11.6034	2.92e-05	0.225	GTGACTCAC
JDP2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	97	105	+	11.6034	2.92e-05	0.225	GTGACTCAC
USF1	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	75	85	-	12.551	2.92e-05	0.125	CTCACGTGATT
USF1	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	40	+	12.551	2.92e-05	0.125	CTCACGTGATT
HSF4	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	40	52	+	12.2073	2.93e-05	1	CTCGGGAAGTTTC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	+	12.9818	2.93e-05	0.16	AATGACTCATT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	+	12.9818	2.93e-05	0.16	AATGACTCATT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	+	12.9818	2.93e-05	0.16	AATGACTCATT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	-	12.9818	2.93e-05	0.16	AATGACTCATT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	-	12.9818	2.93e-05	0.16	AATGACTCATT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	-	12.9818	2.93e-05	0.16	AATGACTCATT
HINFP	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	23	34	+	12.2879	2.93e-05	0.109	GCGCGTCCCCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	91	102	+	12.2879	2.93e-05	0.109	GCGCGTCCCCGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	91	102	+	12.2879	2.93e-05	0.109	GCGCGTCCCCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	91	102	+	12.2879	2.93e-05	0.109	GCGCGTCCCCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	91	102	+	12.2879	2.93e-05	0.109	GCGCGTCCCCGG
PROX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.1	91	102	-	10.8727	2.93e-05	1	CAGGACTCCTTA
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.1.0	91	102	-	10.8727	2.93e-05	1	CAGGACTCCTTA
PROX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.0.0	91	102	-	10.8727	2.93e-05	1	CAGGACTCCTTA
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.0	91	102	-	10.8727	2.93e-05	1	CAGGACTCCTTA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	59	-	12.2857	2.93e-05	0.285	GGCCACGTGAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	17	33	-	6.78182	2.93e-05	0.0201	TGCGCCCCGCCCCGCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	17	33	-	6.78182	2.93e-05	0.0201	TGCGCCCCGCCCCGCTC
ELF3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	64	76	-	10.5172	2.93e-05	0.127	GAAGCGGAAGTAC
ELF3	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	84	96	+	10.5172	2.93e-05	0.127	TATCCGGAAGCAA
Gabpa	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	4	14	-	12.5738	2.93e-05	0.0444	CCGGAAGGGAG
Gabpa	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	101	111	+	12.5738	2.93e-05	0.0444	CCGGAAGGGAG
ID4	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	3	12	+	13.2459	2.93e-05	0.389	TACACCTGCG
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	84	93	-	13.2459	2.93e-05	0.389	TACACCTGCG
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	84	93	-	13.2459	2.93e-05	0.389	TACACCTGCG
SNAI2	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	66	74	-	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	73	81	-	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	94	102	-	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	16	24	+	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	38	+	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	89	+	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	106	+	12.5581	2.93e-05	0.433	AGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	106	+	12.5581	2.93e-05	0.433	AGCAGGTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	12	26	+	12.1034	2.93e-05	0.00855	CTCCCTCCCTCGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	51	65	+	12.1034	2.93e-05	0.00855	CTTCCGCCTCCCTGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	51	65	+	12.1034	2.93e-05	0.00855	CTTCCGCCTCCCTGT
SP2	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	54	68	+	12.1034	2.93e-05	0.00855	GACCCGCCCACCTGG
SP2	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	65	79	+	12.1034	2.93e-05	0.00855	GCCGCGCCCCCAGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	10	24	-	12.1034	2.93e-05	0.00855	GGACCGCCCACTCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	10	24	-	12.1034	2.93e-05	0.00855	GGACCGCCCACTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	10	24	-	12.1034	2.93e-05	0.00855	GGACCGCCCACTCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	10	24	-	12.1034	2.93e-05	0.00855	GGACCGCCCACTCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	10	24	-	12.1034	2.93e-05	0.00855	GGACCGCCCACTCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	36	50	-	12.1034	2.93e-05	0.00855	GCCGCGCCCCCAGCC
Rfx1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	45	58	+	11.7759	2.93e-05	0.173	GGAACTATGGCAAC
Rfx1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	57	70	-	11.7759	2.93e-05	0.173	GGAACTATGGCAAC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	+	8.85714	2.93e-05	0.217	GGTGAGTCACT
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	+	8.85714	2.93e-05	0.217	GGTGAGTCACT
NFE2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	-	8.85714	2.93e-05	0.217	GGTGAGTCACT
CEBPG	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	+	11.6939	2.93e-05	0.597	GTGGCGCAAC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	-	12.1475	2.93e-05	0.064	CGCCCGCGAGGCG
MEOX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	17	26	+	10.6238	2.93e-05	1	TGTAATTAAG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	20	+	8.96552	2.93e-05	0.0332	CCCCCCCCCCCCACC
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	12.7903	2.93e-05	1	AGCATATGTC
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	25	35	-	12.8966	2.93e-05	0.0458	GGGTGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	32	42	-	12.8966	2.93e-05	0.0458	GGGTGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	41	51	-	12.8966	2.93e-05	0.0458	GGGTGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	50	60	-	12.8966	2.93e-05	0.0458	GGGTGGGAAGC
E2F6	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	61	71	-	12.8966	2.93e-05	0.0458	GCGAGGGAAAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	20	30	+	12.8966	2.93e-05	0.0458	GGGTGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	20	30	+	12.8966	2.93e-05	0.0458	GGGTGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	32	42	+	12.8966	2.93e-05	0.0458	GGGTGGGAGGG
E2F6	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	44	54	+	12.8966	2.93e-05	0.0458	GCGAGGGAAAG
E2F6	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	64	74	+	12.8966	2.93e-05	0.0458	GGGTGGGAAGC
Npas2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	+	12.9508	2.93e-05	0.333	GCCACGTGGA
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	+	12.9508	2.93e-05	0.333	GCCACGTGGA
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	12.5192	2.93e-05	0.0981	TCCGGAAATG
FEV	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	12.5192	2.93e-05	0.0981	TCCGGAAATG
FEV	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	12.5192	2.93e-05	0.0981	TCCGGAAATG
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	88	104	+	-12	2.93e-05	0.94	CGCTTGCCAGGCAGCCC
GATA2	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	4	17	-	12.9091	2.93e-05	0.951	CCTTCCTTATCTCA
GATA2	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	16	29	-	12.9091	2.93e-05	0.951	CCTTCCTTATCTCA
GATA2	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	34	47	-	12.9091	2.93e-05	0.951	CCTTCCTTATCTCA
GATA2	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	68	81	+	12.9091	2.93e-05	0.951	CCTTCCTTATCTCA
Zfx	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	19	32	-	12.5152	2.93e-05	0.041	CGTCCCTGGGCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	83	96	+	12.5152	2.93e-05	0.041	CGTCCCTGGGCCTC
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	89	104	-	6.10909	2.93e-05	0.312	AAAATCAAAGTTCAGT
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	89	104	-	6.10909	2.93e-05	0.312	AAAATCAAAGTTCAGT
TEAD4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	14	23	-	11.8871	2.93e-05	0.719	CGCATTCCTG
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	14	23	-	11.8871	2.93e-05	0.719	CGCATTCCTG
TEAD4	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	92	101	+	11.8871	2.93e-05	0.719	CGCATTCCTG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	14	27	+	11.9615	2.93e-05	0.0151	CGCCTTCCCCCACC
EGR1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	46	59	+	11.9615	2.93e-05	0.0151	CCCCCGCTGCCGCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	42	55	-	11.9615	2.93e-05	0.0151	CGCCTTCCCCCACC
EGR1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	56	69	-	11.9615	2.93e-05	0.0151	CCCCCGCTGCCGCG
Klf12	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	63	77	-	10.4918	2.93e-05	0.046	TACCCCGCCCCACCC
FOXH1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	51	61	-	12.9423	2.93e-05	1	GCCAATCAACA
FOXH1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	54	64	+	12.9423	2.93e-05	1	GCCAATCAACA
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	45	62	-	12.4364	2.93e-05	0.915	TTTATCTTTATGTAACAC
HES7	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	15	-	6.27586	2.93e-05	0.189	GGACACGTGACA
HES7	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	100	111	+	6.27586	2.93e-05	0.189	GGACACGTGACA
EOMES	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	26	38	+	12.4268	2.93e-05	1	CAGGTGCGAAAGC
EOMES	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	26	38	+	12.4268	2.93e-05	1	CAGGTGCGAAAGC
EOMES	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	26	38	+	12.4268	2.93e-05	1	CAGGTGCGAAAGC
EOMES	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	26	38	+	12.4268	2.93e-05	1	CAGGTGCGAAAGC
EOMES	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	26	38	+	12.4268	2.93e-05	1	CAGGTGCGAAAGC
EOMES	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	77	89	-	12.4268	2.93e-05	1	CAGGTGCGAAAGC
Pou2f3	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	12	27	+	12.3049	2.94e-05	0.855	GATTATGCAAAGGAGC
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	27	34	-	12.0769	2.94e-05	0.838	TTGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	4	11	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	23	30	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	55	62	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	77	84	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.1.0	99	106	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.0.0	99	106	-	13.5246	2.94e-05	0.972	TTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	83	90	+	12.0769	2.94e-05	0.838	TTGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	83	90	+	12.0769	2.94e-05	0.838	TTGACAGC
MEIS2	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	31	38	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	96	103	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	96	103	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	96	103	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	96	103	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	101	108	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	102	109	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	102	109	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	106	113	+	13.5246	2.94e-05	0.972	TTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	106	113	+	13.5246	2.94e-05	0.972	TTGACAGG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.5345	2.94e-05	0.0999	GCCGGAAGCG
Vdr	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	26	41	-	6.85246	2.94e-05	0.822	AAGTTCGTGAGGTGTA
Vdr	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	74	89	+	6.85246	2.94e-05	0.822	AAGTTCGTGAGGTGTA
NR3C1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	+	8.04082	2.94e-05	0.991	CGGGACAGGAAGTTCCT
NR3C1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	-	8.04082	2.94e-05	0.991	CGGGACAGGAAGTTCCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	53	64	-	12.3673	2.94e-05	0.0857	AGCCCCGAGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	53	64	-	12.3673	2.94e-05	0.0857	AGCCCCGAGGCC
ZIC3	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	46	60	+	10.2286	2.94e-05	0.101	CCTCCCCCGCCGAGT
ZIC3	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	55	69	-	10.2286	2.94e-05	0.101	CCTCCCCCGCCGAGT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	20	30	-	13.1837	2.94e-05	0.154	CACAGCTGCCC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	20	30	-	13.1837	2.94e-05	0.154	CACAGCTGCCC
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	20	30	-	13.1837	2.94e-05	0.154	CACAGCTGCCC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	20	30	-	13.1837	2.94e-05	0.154	CACAGCTGCCC
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	81	93	+	10.6364	2.94e-05	0.231	CAGGGATCCCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	81	93	+	10.6364	2.94e-05	0.231	CAGGGATCCCCCT
CENPB	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	21	35	+	12	2.94e-05	0.793	CCCGCCCCCCACAAA
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	17	30	-	9.71429	2.94e-05	0.138	CTCTGACGTCAGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	+	12.4727	2.94e-05	0.0548	CGCCGCCGGGCG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	63	74	+	12.4727	2.94e-05	0.0548	CCCCCGCAGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	28	-	12.4727	2.94e-05	0.0548	CCCCCGCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	31	42	-	12.4727	2.94e-05	0.0548	TCCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	31	42	-	12.4727	2.94e-05	0.0548	TCCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	63	74	-	12.4727	2.94e-05	0.0548	TCCCCGAGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	63	74	-	12.4727	2.94e-05	0.0548	TCCCCGAGGCCA
TBX2	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	80	90	-	12.1273	2.94e-05	1	GAGGTGTGACT
TBX2	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	25	35	+	12.1273	2.94e-05	1	GAGGTGTGACT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	20	32	-	12.1148	2.94e-05	0.0575	AGCCTGGAGGGCT
TEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	-	12.0909	2.94e-05	1	AATTACGTAAGG
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	33	45	-	13.1837	2.94e-05	0.135	CGCAGCTGCTTGG
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	61	73	-	13.1837	2.94e-05	0.135	CGCAGCTGCTTGG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	34	44	-	12.9592	2.94e-05	0.165	CAGTGAGTCAC
REL	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	48	57	+	12.3131	2.94e-05	0.263	CGGATTTTCC
REL	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	58	67	-	12.3131	2.94e-05	0.263	CGGATTTTCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	29	45	+	6.76364	2.94e-05	0.0201	CCGGCCCCGCCCCGGAG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	29	45	+	6.76364	2.94e-05	0.0201	CCGGCCCCGCCCCGGAG
SP4	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	69	85	+	6.76364	2.94e-05	0.0201	CCGGCCCCGCCCCGGAG
SP4	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	30	46	-	6.76364	2.94e-05	0.0201	CCGGCCCCGCCCCGGAG
SP4	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	70	86	-	6.76364	2.94e-05	0.0201	CCGGCCCCGCCCCGGAG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	+	12.6545	2.94e-05	0.063	AGCCGCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	-	12.6545	2.94e-05	0.063	AGCCGCCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	-	12.6545	2.94e-05	0.063	AGCCGCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	-	12.6545	2.94e-05	0.063	AGCCGCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	-	12.6545	2.94e-05	0.063	AGCCGCCGGCG
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	2	17	-	11.7636	2.94e-05	0.0374	CCCCCCCCACCCTTTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	26	41	-	11.7636	2.94e-05	0.0374	TCCCGCCCCCCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	26	41	-	11.7636	2.94e-05	0.0374	CCCCCCCCCCGCCAAG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	26	41	-	11.7636	2.94e-05	0.0374	TCCCGCCCCCCCCGCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	26	41	-	11.7636	2.94e-05	0.0374	TCCCGCCCCCCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	26	41	-	11.7636	2.94e-05	0.0374	TCCCGCCCCCCCCGCC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	98	113	+	11.7636	2.94e-05	0.0374	CCCCCCCCACCCTTTC
Znf423	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	23	37	+	7.97753	2.94e-05	0.201	CCACCCCAAGGAGGA
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	14	27	+	10.8793	2.95e-05	0.0259	AGCTCCGCCCCCAG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	25	39	+	-1.62857	2.95e-05	0.656	CAGGTCATCAGGACA
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	22	36	-	-1.62857	2.95e-05	0.656	CAGGTCATCAGGACA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	87	98	+	12.4364	2.95e-05	0.0893	TCCCCCCGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	53	64	-	12.4364	2.95e-05	0.0893	AGCCCCGAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	53	64	-	12.4364	2.95e-05	0.0893	AGCCCCGAGGCC
PLAG1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	4	17	-	8.08163	2.95e-05	0.0647	GCGGCGCTAGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	98	111	+	8.08163	2.95e-05	0.0647	GCGGCGCTAGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	98	111	+	8.08163	2.95e-05	0.0647	GCGGCGCTAGGGGA
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	70	85	-	4.7931	2.95e-05	0.299	TTACCAGAAGGCATTG
SPI1	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	11	24	+	5.94545	2.95e-05	0.144	CAGATGGGGAAGTG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.1	3	16	-	5.94545	2.95e-05	0.144	CAGATGGGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.0	3	16	-	5.94545	2.95e-05	0.144	CAGATGGGGAAGTG
SPI1	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	91	104	-	5.94545	2.95e-05	0.144	CAGATGGGGAAGTG
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	10	21	+	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	10	21	+	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	10	21	+	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	37	48	+	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	67	78	-	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	67	78	-	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	67	78	-	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	67	78	-	12.2903	2.95e-05	0.281	GCCACCACCGTT
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	94	105	-	12.2903	2.95e-05	0.281	GCCACCACCGTT
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	81	98	+	-10.3816	2.95e-05	0.0334	GCGGGGAGGGAAGCAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	17	34	-	-10.3816	2.95e-05	0.0334	GCGGGGAGGGAAGCAGGA
ELF5	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	6	16	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	20	30	-	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	85	95	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	85	95	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	85	95	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	85	95	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	85	95	+	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	80	90	-	12.3091	2.95e-05	0.118	AGCAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	80	90	-	12.3091	2.95e-05	0.118	AGCAGGAAGTC
E2F8	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	1	12	-	7.23171	2.95e-05	0.631	TTTCCTCCCAAA
E2F8	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	103	114	+	7.23171	2.95e-05	0.631	TTTCCTCCCAAA
DUX4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	65	75	+	12.7021	2.95e-05	1	TAAGCGAATCA
DUX4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	40	50	-	12.7021	2.95e-05	1	TAAGCGAATCA
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	14	29	+	6.09091	2.95e-05	0.312	TAGGGCAAGGTGCAGA
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	14	29	+	6.09091	2.95e-05	0.312	TAGGGCAAGGTGCAGA
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	14	29	+	6.09091	2.95e-05	0.312	TAGGGCAAGGTGCAGA
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	44	59	+	6.09091	2.95e-05	0.312	GGGTTCAAAGTAGAGA
Hnf4a	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	74	89	+	6.09091	2.95e-05	0.312	GGGTTCAAAGTAGAGA
Hnf4a	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	26	41	-	6.09091	2.95e-05	0.312	GGGTTCAAAGTAGAGA
TBR1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	37	46	-	12.5957	2.95e-05	0.898	AAGTGTGAAG
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	47	56	-	12.5957	2.95e-05	0.898	AAGTGTGAAG
TBR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	47	56	-	12.5957	2.95e-05	0.898	AAGTGTGAAG
TBR1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	59	68	+	12.5957	2.95e-05	0.898	AAGTGTGAAG
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	69	78	+	12.5957	2.95e-05	0.898	AAGTGTGAAG
TBR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	69	78	+	12.5957	2.95e-05	0.898	AAGTGTGAAG
Myog	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	86	96	-	13.2449	2.95e-05	0.123	GGCAGCTGTAG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	+	12.6596	2.95e-05	0.173	TATGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	+	12.6596	2.95e-05	0.173	TATGACTCAGC
ETS1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	12.6207	2.95e-05	0.0814	ACAGGAAGTA
ETS1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	12.6207	2.95e-05	0.0814	ACAGGAAGTA
BHLHE41	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	10.5769	2.95e-05	0.145	GACACGTGAT
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	10.5769	2.95e-05	0.145	GACACGTGAT
NRL	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	14	24	-	11.5577	2.95e-05	0.776	ACACTGCTGAC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	33	42	-	12.7959	2.95e-05	0.0138	GTCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	33	42	-	12.7959	2.95e-05	0.0138	GTCCCACCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	105	114	-	12.7959	2.95e-05	0.0138	GTCCCACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	11	20	+	12.7959	2.95e-05	0.0138	GTCCCACCCA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	25	35	-	12.5714	2.95e-05	0.196	CTTCTTGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	25	35	-	12.5714	2.95e-05	0.196	CTTCTTGGAAC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	25	35	-	12.5714	2.95e-05	0.196	CTTCTTGGAAC
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	25	35	-	12.5714	2.95e-05	0.196	CTTCTTGGAAC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	25	35	-	12.5714	2.95e-05	0.196	CTTCTTGGAAC
Rfx1	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	34	47	+	11.7586	2.95e-05	0.173	ATGACCCTGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	68	81	-	11.7586	2.95e-05	0.173	ATGACCCTGGCGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	68	81	-	11.7586	2.95e-05	0.173	ATGACCCTGGCGAC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	59	77	+	12.0161	2.95e-05	0.671	TGAACCCAAGTGAATCCCT
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	101	114	+	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	101	114	+	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	101	114	+	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	101	114	+	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	18	31	-	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	18	31	-	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	18	31	-	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
BATF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	18	31	-	4.12121	2.95e-05	0.138	CGGAGACGTCATTG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	51	70	+	6.36697	2.95e-05	0.0477	TTCCCCCCCACCCCACCCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	51	70	+	6.36697	2.95e-05	0.0477	TTCCCCCCCACCCCACCCCG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	51	70	+	6.36697	2.95e-05	0.0477	TTCCCCCCCACCCCACCCCG
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	12	32	+	10.9355	2.95e-05	0.157	CTTTTCTTTTCTTTTTTTTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	12	32	+	10.9355	2.95e-05	0.157	CTTTTCTTTTCTTTTTTTTTT
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	26	40	-	10.4754	2.95e-05	0.0461	GGCCCCGCCTTCCTT
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	58	72	+	10.4754	2.95e-05	0.0461	GGCCCCGCCTTCCTT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	33	43	+	12.3115	2.95e-05	0.136	AACAGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	67	77	+	12.3115	2.95e-05	0.136	CACCGGAAGCT
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	67	77	+	12.3115	2.95e-05	0.136	CACCGGAAGCT
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	67	77	+	12.3115	2.95e-05	0.136	CACCGGAAGCT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	67	77	+	12.3115	2.95e-05	0.136	CACCGGAAGCT
ETV2	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	74	84	+	12.3115	2.95e-05	0.136	AACAGGAAGCA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	66	76	-	12.3115	2.95e-05	0.136	AACAGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	66	76	-	12.3115	2.95e-05	0.136	AACAGGAAGCA
ETV2	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	95	-	12.3115	2.95e-05	0.136	AACAGGAAGCA
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	+	12.8788	2.95e-05	0.247	CACACGTGCT
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	+	12.8788	2.95e-05	0.247	CACACGTGCT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	51	61	-	13.1455	2.95e-05	0.146	TTGTGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	68	78	+	13.1455	2.95e-05	0.146	TTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	71	81	+	13.1455	2.95e-05	0.146	TTATGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	71	81	+	13.1455	2.95e-05	0.146	TTATGACTCAG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	22	33	+	12.2727	2.95e-05	0.109	CCACGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	22	33	+	12.2727	2.95e-05	0.109	CCACGTCCCCCG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	73	+	10.2951	2.95e-05	0.176	CGCCCCCTGCCACG
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	+	10.1376	2.96e-05	0.848	TGGCAGCTTTCA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ERG	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.5636	2.96e-05	0.102	GCCGGAAGTT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	18	38	-	11.2245	2.96e-05	0.0121	AAAGGAGTGCGACGAGGGTGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	62	82	-	11.2245	2.96e-05	0.0121	GGTGGCTGGAGGTAAGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	78	98	-	11.2245	2.96e-05	0.0121	GAAGGAAGAAGGAGTGGGCCA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	93	113	-	11.2245	2.96e-05	0.0121	GGAGGTGGGCTGAGGAGGCGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	2	22	+	11.2245	2.96e-05	0.0121	GGAGGTGGGCTGAGGAGGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	5	25	+	11.2245	2.96e-05	0.0121	GGAGAAAGGGGGGGCTGTGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	5	25	+	11.2245	2.96e-05	0.0121	GAAGGAAGAAGGAGTGGGCCA
ZNF263	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	33	53	+	11.2245	2.96e-05	0.0121	GGTGGCTGGAGGTAAGGAGGC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	81	95	-	11.9545	2.96e-05	0.082	GCCTCGCGAGAAGCC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	15	29	+	11.9545	2.96e-05	0.082	TTCCCGCGATCTGTC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	20	34	+	11.9545	2.96e-05	0.082	GCCTCGCGAGAAGCC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	66	80	+	11.9545	2.96e-05	0.082	TTCCCGCGATCTGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	66	80	+	11.9545	2.96e-05	0.082	TTCCCGCGATCTGTC
SP2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	71	85	+	12.0862	2.96e-05	0.00861	TCCCCTCCTCCCGTT
SP2	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	85	99	+	12.0862	2.96e-05	0.00861	CTCCCACCTCCCCTT
SP2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	100	114	+	12.0862	2.96e-05	0.00861	TCCCCTCCTCCCGTT
SP2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	1	15	-	12.0862	2.96e-05	0.00861	TCCCCTCCTCCCGTT
SP2	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	16	30	-	12.0862	2.96e-05	0.00861	CTCCCACCTCCCCTT
SP2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	30	44	-	12.0862	2.96e-05	0.00861	TCCCCTCCTCCCGTT
SP2	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	61	75	-	12.0862	2.96e-05	0.00861	CTCCCACCTCCCCTT
SP2	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	68	82	-	12.0862	2.96e-05	0.00861	TCTCCACCCCTTCGC
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	-	8.02041	2.96e-05	0.991	GAGGACGAAACGTTCCG
JUN	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	34	46	+	12.4286	2.96e-05	0.301	GGCATGACGTCAC
JUN	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	39	51	+	12.4286	2.96e-05	0.301	GGCATGACGTCAC
JUN	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	64	76	-	12.4286	2.96e-05	0.301	GGCATGACGTCAC
JUN	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	69	81	-	12.4286	2.96e-05	0.301	GGCATGACGTCAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	16	32	+	6.74545	2.96e-05	0.0202	TTCGTCCCGCCCCCCAC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	96	112	+	6.74545	2.96e-05	0.0202	TACCCCCCGCCCCCAAG
SP4	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	28	44	-	6.74545	2.96e-05	0.0202	GCGACCCCGCCCGCCTG
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	26	40	+	11.5152	2.96e-05	0.26	GAGGATGAGTCATCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	41	55	+	12.0631	2.96e-05	0.149	TTAGCACAAAGGTCA
Pparg::Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	41	55	+	12.0631	2.96e-05	0.149	TTAGCACAAAGGTCA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	22	32	+	12.1034	2.96e-05	0.0131	GCCGCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.1.0	22	32	+	12.1034	2.96e-05	0.0131	GCCGCTCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	57	67	+	12.1034	2.96e-05	0.0131	GCCGCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	5	15	-	12.1034	2.96e-05	0.0131	GCCGCTCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	48	58	-	12.1034	2.96e-05	0.0131	GCCGCTCCCCC
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	2	16	-	11.2143	2.96e-05	0.108	TGGGGGGAGGGGCCG
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	95	106	+	12.5618	2.96e-05	1	ACACCAGCTGGC
GLIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	90	103	+	6.59091	2.96e-05	0.379	GACCCCACGCCTTG
GLIS3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	90	103	+	6.59091	2.96e-05	0.379	GACCCCACGCCTTG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	12	25	-	6.59091	2.96e-05	0.379	GACCCCACGCCTTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
ETV1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.4545	2.96e-05	0.0875	CCCGGAAGTG
RELA	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	11	20	-	12.5204	2.96e-05	0.199	CGGGAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	62	71	-	12.5204	2.96e-05	0.199	CGGGAATTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	62	71	-	12.5204	2.96e-05	0.199	CGGGAATTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	101	110	-	12.5204	2.96e-05	0.199	CGGGAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	101	110	-	12.5204	2.96e-05	0.199	CGGGAATTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	20	30	+	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	20	30	+	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	32	42	-	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	32	42	-	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	38	48	-	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	67	77	+	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	74	84	-	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	74	84	-	12.5385	2.96e-05	0.00978	GGCCCGCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	23	36	+	11.9423	2.96e-05	0.0152	CCCTCTCCTCCTCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	-	12	2.96e-05	0.0554	AGCCCGGGAGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	+	12	2.96e-05	0.0554	AGCCCGGGAGGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	-	12.8364	2.96e-05	0.109	GGCACGTGTG
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	-	12.8364	2.96e-05	0.109	GGCACGTGTG
Hoxd9	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	2	11	+	11.5833	2.96e-05	1	GTCATAAAAA
Hoxd9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	77	86	+	11.5833	2.96e-05	1	GTCATAAAAA
Hoxd9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	77	86	+	11.5833	2.96e-05	1	GTCATAAAAA
E2F7	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	37	50	+	-0.655738	2.96e-05	1	TTTCCGCGCCACAT
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	-	10.5385	2.96e-05	0.0769	GGCACGTGTG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	-	10.5385	2.96e-05	0.0769	GGCACGTGTG
Gabpa	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	44	54	-	12.5574	2.97e-05	0.0447	CCGGAAATGCT
Gabpa	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	62	72	+	12.5574	2.97e-05	0.0447	CCGGAAATGCT
Gabpa	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	62	72	+	12.5574	2.97e-05	0.0447	CCGGAAATGCT
Crem	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	30	+	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	38	+	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	46	+	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	84	+	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	95	+	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	20	29	-	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	31	40	-	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	31	40	-	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	69	78	-	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	77	86	-	12.918	2.97e-05	0.237	GGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	85	94	-	12.918	2.97e-05	0.237	GGTGACGTCA
Arx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	3	19	-	12.4048	2.97e-05	1	AGCTCTTAATTAATTGA
Arx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	3	19	-	12.4048	2.97e-05	1	AGCTCTTAATTAATTGA
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	24	33	+	12.0826	2.97e-05	0.047	CTCCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	24	33	+	12.0826	2.97e-05	0.047	CTCCCCCCAT
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	3	12	-	12.0826	2.97e-05	0.047	CTCCCCCCAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	13.2115	2.97e-05	0.245	CACACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	13.2115	2.97e-05	0.245	CACACGTGCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	+	12.1148	2.97e-05	0.064	TCCCTGGAGGGCT
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	-	12.1148	2.97e-05	0.064	TCCCTGGAGGGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	34	-	12.6727	2.97e-05	0.0474	CGGTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	34	-	12.6727	2.97e-05	0.0474	CGGTTTCCGGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	34	44	+	12.6727	2.97e-05	0.0474	GGACTTCCGCC
ELK4	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	50	60	+	12.6727	2.97e-05	0.0474	GGACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	55	65	-	12.6727	2.97e-05	0.0474	GGACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	55	65	-	12.6727	2.97e-05	0.0474	GGACTTCCGCC
ELK4	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	55	65	-	12.6727	2.97e-05	0.0474	GGACTTCCGCC
ELK4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	71	81	-	12.6727	2.97e-05	0.0474	GGACTTCCGCC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	34	43	+	12.3163	2.97e-05	0.0149	TGGGCGTGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	34	43	+	12.3163	2.97e-05	0.0149	TGGGCGTGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	48	57	+	12.3163	2.97e-05	0.0149	TGGGCGTGTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	20	33	+	10.8621	2.97e-05	0.026	CGACCCGCCCCCGA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	20	33	+	10.8621	2.97e-05	0.026	CGACCCGCCCCCGA
KLF14	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	49	62	+	10.8621	2.97e-05	0.026	TGCTCCGCCCACAG
KLF14	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	53	66	-	10.8621	2.97e-05	0.026	TGCTCCGCCCACAG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	-	12.3571	2.97e-05	0.0857	GGCCTGGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	-	12.3571	2.97e-05	0.0857	GGCCTGGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	-	12.3571	2.97e-05	0.0857	GGCCTGGGGGCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	16	26	-	12.6909	2.97e-05	0.0506	CGCCCGCGGCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	98	108	-	12.6909	2.97e-05	0.0506	CGCCCGCGGCC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	+	12.6909	2.97e-05	0.0506	GGCCCCAGGCT
Rxra	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	107	-	5.71951	2.97e-05	0.362	GAGATTAAAGGTGA
RREB1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	2	21	-	6.34862	2.97e-05	0.0477	CCCCGCCTCTCCCCCCACGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	68	82	-	10.459	2.97e-05	0.0462	AGCCCCGCCCCTCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	68	82	-	10.459	2.97e-05	0.0462	AGCCCCGCCCCTCCG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	5	20	-	-5.09615	2.97e-05	0.317	CCACCCGCCGCGCCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	5	20	-	-5.09615	2.97e-05	0.317	CCACCCGCCGCGCCGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	5	20	-	-5.09615	2.97e-05	0.317	CCACCCGCCGCGCCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	5	20	-	-5.09615	2.97e-05	0.317	CCACCCGCCGCGCCGC
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	26	41	-	-5.09615	2.97e-05	0.317	GCACCCCCCCCGCCGC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	12.5192	2.97e-05	0.123	CCCACGTGAT
TFEB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	12.5192	2.97e-05	0.123	CCCACGTGAT
TFEB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	12.5192	2.97e-05	0.123	CCCACGTGAT
TFEB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	12.5192	2.97e-05	0.123	CCCACGTGAT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	12.5192	2.97e-05	0.123	CCCACGTGAT
EGR2	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	25	35	-	11.2931	2.97e-05	0.0692	CCGCCGACGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	65	75	-	11.2931	2.97e-05	0.0692	CCGCCGACGCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	80	90	+	11.2931	2.97e-05	0.0692	CCGCCGACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	86	96	+	11.2931	2.97e-05	0.0692	CCGCCGACGCC
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	25	38	+	12.7414	2.97e-05	0.213	GTTCCAAGAAGCTA
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	25	38	+	12.7414	2.97e-05	0.213	GTTCCAAGAAGCTA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	25	38	+	12.7414	2.97e-05	0.213	GTTCCAAGAAGCTA
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	25	38	+	12.7414	2.97e-05	0.213	GTTCCAAGAAGCTA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	25	38	+	12.7414	2.97e-05	0.213	GTTCCAAGAAGCTA
ZIC1	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	58	71	-	8.76596	2.97e-05	0.0959	GGCCGCCCGCGGGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	63	80	+	-10.4079	2.97e-05	0.0334	GGAGGCAGGGAAGGAGCA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	94	111	+	-10.4079	2.97e-05	0.0334	GGGGGTAAGGCAAGAGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	7	24	-	-10.4079	2.97e-05	0.0334	GCGAGGGAGGGAGGGAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	63	80	-	-10.4079	2.97e-05	0.0334	GGAAGCCGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	63	80	-	-10.4079	2.97e-05	0.0334	GGAAGCCGGGAGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	65	82	-	-10.4079	2.97e-05	0.0334	GGAAAGAGGAAGGGAGGC
IRF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	50	67	+	7.94495	2.97e-05	0.589	TAAAAGGGAAAGCGTGCC
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	14	25	+	12.253	2.97e-05	1	TTATGCAAAGGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	21	36	+	11.7455	2.97e-05	0.0374	CCCCGCCCCCTCGCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	21	36	+	11.7455	2.97e-05	0.0374	CCCCGCCCCCTCGCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	38	53	+	11.7455	2.97e-05	0.0374	CCCCGCCCCCTCGCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	38	53	+	11.7455	2.97e-05	0.0374	CCCCGCCCCCTCGCTC
EGR4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	49	64	+	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	51	66	-	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	51	66	-	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	51	66	-	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	51	66	-	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	51	66	-	11.7455	2.97e-05	0.0374	TTCCGCCCGCCCCCCG
SP4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	72	88	+	6.72727	2.97e-05	0.0202	TCGACCCCACCCCCCCC
SP4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	27	43	-	6.72727	2.97e-05	0.0202	TCGACCCCACCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	44	+	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	44	+	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	72	+	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	72	+	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	20	30	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	20	30	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	20	30	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	50	60	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	50	60	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	50	60	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	50	60	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	50	60	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	51	61	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	51	61	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	51	61	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	51	61	-	12.1951	2.98e-05	0.0162	GCCCCACCCCA
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	25	38	-	10.2787	2.98e-05	0.176	CCCCCCCCGCCGCC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	36	49	+	10.2787	2.98e-05	0.176	CGCCCCCCGCGCGC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	36	49	+	10.2787	2.98e-05	0.176	CGCCCCCCGCGCGC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	36	49	+	10.2787	2.98e-05	0.176	CGCCCCCCGCGCGC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	36	49	+	10.2787	2.98e-05	0.176	CGCCCCCCGCGCGC
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	78	92	+	12.4038	2.98e-05	0.108	GCATTGACCAATAGG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	78	92	+	12.4038	2.98e-05	0.108	GCATTGACCAATAGG
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	7	18	+	6.14754	2.98e-05	0.598	TGACTGCTGGCA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	7	18	+	6.14754	2.98e-05	0.598	TGACTGCTGGCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	7	18	+	6.14754	2.98e-05	0.598	TGACTGCTGGCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	7	18	+	6.14754	2.98e-05	0.598	TGACTGCTGGCA
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	5	16	-	6.14754	2.98e-05	0.598	TGACTGCTGGCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	-	6.14754	2.98e-05	0.598	GGACAGCTGTTA
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	59	70	-	11.9655	2.98e-05	0.33	GCCACCACACAG
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	59	70	-	11.9655	2.98e-05	0.33	GCCACCACACAG
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	59	70	-	11.9655	2.98e-05	0.33	GCCACCACACAG
E2F7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	40	53	-	-0.688525	2.98e-05	1	CTCTCCCGCCAAGT
E2F7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	40	53	-	-0.688525	2.98e-05	1	CTCTCCCGCCAAGT
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	65	78	+	10.4697	2.98e-05	0.271	TGGGTGAGAGGTTA
USF2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	14	-	12.9592	2.98e-05	0.0929	GACACGTGACA
USF2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	111	+	12.9592	2.98e-05	0.0929	GACACGTGACA
NFKB2	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	39	51	+	10.5909	2.98e-05	0.231	AGGGATTTTCCCA
NFKB2	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	64	76	-	10.5909	2.98e-05	0.231	AGGGATTTTCCCA
Hand1::Tcf3	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	52	61	+	12.1348	2.98e-05	0.93	GGTCTGGCTC
Hand1::Tcf3	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	54	63	-	12.1348	2.98e-05	0.93	GGTCTGGCTC
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	75	84	-	12.1348	2.98e-05	0.93	GGTCTGGCTG
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	75	84	-	12.1348	2.98e-05	0.93	TGTCTGGATT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	75	84	-	12.1348	2.98e-05	0.93	TGTCTGGATT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	75	84	-	12.1348	2.98e-05	0.93	TGTCTGGATT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	75	84	-	12.1348	2.98e-05	0.93	GGTCTGGCTG
Rfx1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	86	99	+	11.7414	2.98e-05	0.173	ATCTCCTAAGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	16	29	-	11.7414	2.98e-05	0.173	ATCTCCTAAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	16	29	-	11.7414	2.98e-05	0.173	ATCTCCTAAGCAAC
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	33	47	-	12.4894	2.98e-05	0.311	GGCAATGAGGTCAGT
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	68	82	+	12.4894	2.98e-05	0.311	GGCAATGAGGTCAGT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	68	82	+	12.4894	2.98e-05	0.311	GGCAATGAGGTCAGT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	12.1277	2.98e-05	0.0696	ACCGGAAGAG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	12.1277	2.98e-05	0.0696	ACCGGAAGAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	18	28	+	11.9455	2.98e-05	0.0134	GCCCTTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	18	28	+	11.9455	2.98e-05	0.0134	GCCCTTGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	70	80	+	11.9455	2.98e-05	0.0134	GCGCCCGTGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	+	12.4182	2.98e-05	0.0893	CGCCCCGGGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	-	12.4182	2.98e-05	0.0893	CGCCCCGGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	-	12.4182	2.98e-05	0.0893	CGCCCCGGGCCG
Myog	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	11	+	13.2245	2.98e-05	0.123	CGCAGCTGCTC
Myog	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	31	+	13.2245	2.98e-05	0.123	CGCAGCTGCTC
Myog	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	84	94	-	13.2245	2.98e-05	0.123	CGCAGCTGCTC
Myog	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	104	114	-	13.2245	2.98e-05	0.123	CGCAGCTGCTC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	23	42	-	6.33945	2.98e-05	0.0477	CTCCACGCCACCCCCATCCT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	49	+	6.33945	2.98e-05	0.0477	CCCCCCCCCCCCCCGCGCGC
EHF	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	33	44	+	11.918	2.98e-05	0.118	CTGCCGGAAGTT
EHF	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	82	-	11.918	2.98e-05	0.118	CTGCCGGAAGTT
EHF	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	93	-	11.918	2.98e-05	0.118	CTGCCGGAAGTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	26	39	+	12.4848	2.98e-05	0.0413	AGGGGTGGGGCCTA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	26	39	+	12.4848	2.98e-05	0.0413	AGGGGTGGGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	26	39	+	12.4848	2.98e-05	0.0413	AGGGGTGGGGCCTA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	26	39	+	12.4848	2.98e-05	0.0413	AGGGGTGGGGCCTA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	95	105	+	12.898	2.98e-05	0.263	GTTTCCCAGTA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	95	105	+	12.898	2.98e-05	0.263	GTTTCCCAGTA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	44	54	+	13.1633	2.98e-05	0.154	GGCAGCTGATG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	44	54	+	13.1633	2.98e-05	0.154	GGCAGCTGATG
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	15	25	-	10	2.98e-05	0.862	TTCAAGGTTAC
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	15	25	-	10	2.98e-05	0.862	TTCAAGGTTAC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	85	99	+	11.8727	2.98e-05	0.0988	CGACGCCCGCGGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	85	99	+	11.8727	2.98e-05	0.0988	CGACGCCCGCGGCGC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	28	38	-	12.6182	2.98e-05	0.0636	CGCCCGGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	76	89	-	8.04082	2.98e-05	0.0647	GGGGGACAATGGTG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	76	89	-	8.04082	2.98e-05	0.0647	GGGGGACAATGGTG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	76	89	-	8.04082	2.98e-05	0.0647	GGGGGACAATGGTG
SREBF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	66	75	+	12.7528	2.98e-05	0.871	GTGGCCTGAT
SREBF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	66	75	+	12.7528	2.98e-05	0.871	GTGGCCTGAT
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	66	75	+	12.7528	2.98e-05	0.871	GTGGCCTGAT
STAT1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	12	22	-	12.1091	2.98e-05	0.257	GTTACGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	23	40	-	-10.4211	2.99e-05	0.0335	GTGAGGGAGGGAGGGAGC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	18	29	-	9.36735	2.99e-05	0.114	TGTGACGTCAGA
E2F7	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	22	35	+	-0.704918	2.99e-05	1	GCTTCCCACCAACT
E2F7	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	80	93	-	-0.704918	2.99e-05	1	GCTTCCCACCAACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	13	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	13	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	13	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	44	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	67	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	56	67	+	12.1842	2.99e-05	0.0237	CCCACGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	67	+	12.1842	2.99e-05	0.0237	GCCCCTCCCCTC
SP8	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	48	59	-	12.1842	2.99e-05	0.0237	CCCACGCCCTCC
SP8	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	66	77	-	12.1842	2.99e-05	0.0237	CCCACGCCCTCC
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	21	36	-	4.74138	2.99e-05	0.299	CGCCCACCATGCTCCC
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	21	36	-	4.74138	2.99e-05	0.299	CGCCCACCATGCTCCC
ZNF143	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	79	94	+	4.74138	2.99e-05	0.299	CGCCCACCATGCTCCC
ETV5	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.0182	2.99e-05	0.0793	TCCGGAAGTC
ETV5	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.0182	2.99e-05	0.0793	TCCGGAAGTC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.0182	2.99e-05	0.0793	TCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.0182	2.99e-05	0.0793	TCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.0182	2.99e-05	0.0793	TCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.0182	2.99e-05	0.0793	TCCGGAAGTC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	91	100	+	11.9192	2.99e-05	0.165	CGAGGGGAAA
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	3	13	+	12.0862	2.99e-05	0.0132	GCCAATCCCCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	13	27	-	10.1857	2.99e-05	0.101	CCCCTCCTCCTGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	13	27	-	10.1857	2.99e-05	0.101	CCCCTCCTCCTGCGT
ZIC3	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	83	97	-	10.1857	2.99e-05	0.101	GCCTCCCCACTGCTT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	21	40	-	6.33028	2.99e-05	0.0477	CTCCCCTCCACCACCATCCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	21	40	-	6.33028	2.99e-05	0.0477	CTCCCCTCCACCACCATCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	21	40	-	6.33028	2.99e-05	0.0477	CTCCCCTCCACCACCATCCC
RREB1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	76	95	-	6.33028	2.99e-05	0.0477	CCCGCCCCCGCCACCTCCCC
RREB1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	20	39	+	6.33028	2.99e-05	0.0477	CCCGCCCCCGCCACCTCCCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	9	29	-	11.2041	2.99e-05	0.0121	AGATGAGTCAGAAGAGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	11	31	-	11.2041	2.99e-05	0.0121	GAGGCAGGGGCGGGGTAAAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	11	31	-	11.2041	2.99e-05	0.0121	GAGGCAGGGGCGGGGTAAAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	41	61	-	11.2041	2.99e-05	0.0121	GGAAGTTAAAAGGGAGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	41	61	-	11.2041	2.99e-05	0.0121	GGAAGTTAAAAGGGAGGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	47	67	-	11.2041	2.99e-05	0.0121	GGGAAAGGGGCGGGGGGAGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	89	109	-	11.2041	2.99e-05	0.0121	GGGGGCGGGCCGGGCGGGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	6	26	+	11.2041	2.99e-05	0.0121	GGGGGCGGGCCGGGCGGGGCG
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	48	68	+	11.2041	2.99e-05	0.0121	GGGAAAGGGGCGGGGGGAGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	50	70	+	11.2041	2.99e-05	0.0121	GGGGAAGGGTTCGGGGAGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	80	100	+	11.2041	2.99e-05	0.0121	AGATGAAGAGGAGGCGGTGGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	90	110	+	11.2041	2.99e-05	0.0121	AAGGGAAGAGTCAGGGGAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	90	110	+	11.2041	2.99e-05	0.0121	AAGGGAAGAGTCAGGGGAGAA
PLAG1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	35	48	+	8.03061	2.99e-05	0.0647	GGGGCGAGAGGGTG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	72	85	+	8.03061	2.99e-05	0.0647	GGGGCGAGAGGGTG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	12	25	+	11.9231	2.99e-05	0.0153	CTCCCTCCCTCGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	13	26	+	11.9231	2.99e-05	0.0153	CCACCGCCGCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	13	26	+	11.9231	2.99e-05	0.0153	CCACCGCCGCCTGC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	14	27	+	11.9231	2.99e-05	0.0153	CACCCACCCACATC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	62	75	-	11.9231	2.99e-05	0.0153	ACCACGCCCCCTTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	8	24	+	6.70909	2.99e-05	0.0203	CCGGCCCCGCCTTTTTC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	8	24	+	6.70909	2.99e-05	0.0203	CCGGCCCCGCCTTTTTC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	91	107	-	6.70909	2.99e-05	0.0203	CCGGCCCCGCCTTTTTC
ELK3	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	12.5517	2.99e-05	0.0887	ACCGGATGTC
ELK3	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	12.5517	2.99e-05	0.0887	ACCGGATGTC
BHLHE22	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	13.0758	2.99e-05	1	AGCATATGGC
BHLHE22	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	13.0758	2.99e-05	1	AGCATATGGC
USF2	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	45	55	-	12.9388	2.99e-05	0.093	GCCACGTGAGC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	30	40	-	13	2.99e-05	0.146	CCATGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	30	40	-	13	2.99e-05	0.146	CCATGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	67	77	-	13	2.99e-05	0.146	CCATGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	68	78	-	13	2.99e-05	0.146	CCGTGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	68	78	-	13	2.99e-05	0.146	CCGTGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	30	40	+	13	2.99e-05	0.146	CCATGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	34	44	+	13	2.99e-05	0.146	CCGTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	34	44	+	13	2.99e-05	0.146	CCGTGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	38	48	+	13	2.99e-05	0.146	CCATGACTCAC
SPDEF	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	35	45	+	12	2.99e-05	0.225	TGCCGGATGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	80	-	12	2.99e-05	0.225	TGCCGGATGCG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	80	-	12	2.99e-05	0.225	TGCCGGATGCG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	12	22	-	12.4848	2.99e-05	0.0428	CCCCCCACCCA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	5	15	+	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	5	15	+	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	5	15	+	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	5	15	+	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	2	12	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	24	34	+	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	25	35	+	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	26	36	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	26	36	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	37	47	+	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	30	40	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	30	40	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	30	40	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	30	40	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	30	40	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	39	49	-	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	39	49	-	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	75	85	+	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	68	78	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	80	90	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	80	90	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	81	91	-	12.7931	2.99e-05	0.0451	GAGCGGGAGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	87	97	-	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
E2F4	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	103	113	+	12.7931	2.99e-05	0.0451	GGGCGGGGAAG
Klf12	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	38	52	-	10.4426	2.99e-05	0.0465	AGCCCCGCCCCCTCC
HINFP	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	51	62	-	12.2424	3e-05	0.109	CAGCGTCCGGCG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	35	55	-	10.9032	3e-05	0.157	TTTCAGTTCCCGTTTCCTTCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	12.5	3e-05	0.174	AACACCTGCT
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	25	43	+	11.9516	3e-05	0.137	GAGCGCGCGCGAGCAAGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	25	43	+	11.9516	3e-05	0.137	GAGCGCGCGCGAGCAAGAC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	21	39	-	11.9516	3e-05	0.137	CTGGGCAGGCGTGTGCGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	21	39	-	11.9516	3e-05	0.137	CTGGGCAGGCGTGTGCGAC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	21	39	-	11.9516	3e-05	0.137	CTGGGCAGGCGTGTGCGAC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	21	39	-	11.9516	3e-05	0.137	CTGGGCAGGCGTGTGCGAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	60	77	-	-10.4342	3e-05	0.0336	AGAGGAAGGAAAGGCAGG
JUN	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	88	100	+	12.4082	3e-05	0.301	AGGATGATGTCAA
JUN	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	15	27	-	12.4082	3e-05	0.301	AGGATGATGTCAA
Myod1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	83	+	13.1633	3e-05	0.135	CCCACCTGCCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	2	14	-	13.1633	3e-05	0.135	AGCAGCTGTGGGT
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	2	14	-	13.1633	3e-05	0.135	AGCAGCTGTGGGT
Myod1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	32	44	-	13.1633	3e-05	0.135	CCCACCTGCCCCA
E2F6	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	61	71	-	12.8793	3e-05	0.0458	AGGAGGGAGCG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	73	83	-	12.8793	3e-05	0.0458	AGGAGGGAACC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	73	83	-	12.8793	3e-05	0.0458	AGGAGGGAACC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	88	98	-	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	88	98	-	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	88	98	-	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	88	98	-	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	88	98	-	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	17	27	+	12.8793	3e-05	0.0458	TGGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	32	42	+	12.8793	3e-05	0.0458	AGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	32	42	+	12.8793	3e-05	0.0458	AGGAGGGAGCG
E2F6	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	44	54	+	12.8793	3e-05	0.0458	AGGAGGGAGCG
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	42	53	-	12.4891	3e-05	1	AATCGTTTGTTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	42	53	-	12.4891	3e-05	1	AATCGTTTGTTT
Foxd3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.1	42	53	-	12.4891	3e-05	1	AATCGTTTGTTT
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.0	42	53	-	12.4891	3e-05	1	AATCGTTTGTTT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	-	8.65306	3e-05	0.221	AGTGAGTCACT
SP3	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	18	28	+	12.187	3e-05	0.0163	CCCACTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	60	70	-	12.187	3e-05	0.0163	CCCACTCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	60	70	-	12.187	3e-05	0.0163	CCCACTCCCTC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	+	12.082	3e-05	0.0579	GCCCCCGCGGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	-	12.082	3e-05	0.0579	GCCCCCGCGGGCC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	+	12.082	3e-05	0.0579	GCCCCCGCGGGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	75	85	+	11.9273	3e-05	0.0135	GCGCCGGCCCC
FOS	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	-	13.1064	3e-05	0.211	AGTGAGTCACT
REST	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	14	34	+	7.30612	3e-05	0.208	CTCAGCTCCTTGGGCAATTCA
EGR3	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	16	30	-	8.89655	3e-05	0.0339	GCGCGCCCCCGCGGC
EGR3	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	38	52	-	8.89655	3e-05	0.0339	TCCCGCCCTCGCTCG
EGR3	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	63	77	+	8.89655	3e-05	0.0339	TCCCGCCCTCGCTCG
NHLH1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	+	12.4828	3e-05	0.115	AGCAGCTGTT
NHLH1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	+	12.4828	3e-05	0.115	AGCAGCTGTT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	-	12.4828	3e-05	0.115	AGCAGCTGTT
EGR4	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	15	30	-	11.7273	3.01e-05	0.0374	CCCCGCCCTCCCAGCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	49	64	-	11.7273	3.01e-05	0.0374	CCGCGCCCCCGCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	49	64	-	11.7273	3.01e-05	0.0374	CCGCGCCCCCGCCTCC
EGR4	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	85	100	+	11.7273	3.01e-05	0.0374	CCCCGCCCTCCCAGCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	30	41	-	12.1711	3.01e-05	0.0238	GCCCCGCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	30	41	-	12.1711	3.01e-05	0.0238	GCCCCGCCTCCA
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	9	18	+	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	9	18	+	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	9	18	+	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	9	18	+	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	13	22	+	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	65	74	-	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	65	74	-	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	65	74	-	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	65	74	-	12.8966	3.01e-05	0.659	GCTTTGTTCC
Sox3	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	93	102	-	12.8966	3.01e-05	0.659	GCTTTGTTCC
GLIS3	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	104	+	6.54545	3.01e-05	0.379	GCCCCCCCAGGCAG
FEV	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.4615	3.01e-05	0.0992	ACCGGAAGGA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	12	26	-	10.1714	3.01e-05	0.101	TGCCACCTGCTGGTT
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	8	27	-	6.31193	3.01e-05	0.0479	CACCAACCAATCCCACCCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	73	89	+	6.69091	3.01e-05	0.0204	AGAGCCACACCCACACG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	100	110	-	12.7308	3.01e-05	0.273	GAGATGAGTAA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	100	110	-	12.7308	3.01e-05	0.273	GAGATGAGTAA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	5	15	+	12.7308	3.01e-05	0.273	GAGATGAGTAA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	64	78	+	11.4091	3.01e-05	0.276	CCGCTTTCGGTTCTT
NRF1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	104	114	+	11.9091	3.01e-05	0.0135	GCGCGGGCCCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	18	28	-	11.9091	3.01e-05	0.0135	GCGCGGGCCCG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	62	74	-	9.31148	3.01e-05	0.762	TCGCAACAGCTGA
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	62	74	-	9.31148	3.01e-05	0.762	TCGCAACAGCTGA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	+	12.6	3.01e-05	0.0637	CGCCGCCGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	+	12.6	3.01e-05	0.0637	CGCCGCCGGCG
Hoxa9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	74	84	+	12.3816	3.01e-05	1	GTCATCAATCC
Hoxa9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	74	84	+	12.3816	3.01e-05	1	GTCATCAATCC
Hoxa9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	74	84	+	12.3816	3.01e-05	1	GTCATCAATCC
Hoxa9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	74	84	+	12.3816	3.01e-05	1	GTCATCAATCC
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	21	35	-	12.4681	3.01e-05	0.311	GGAAATGAGGCAATG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	21	35	-	12.4681	3.01e-05	0.311	GGAAATGAGGCAATG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	38	51	+	10.8276	3.01e-05	0.0264	GGGGACGCCCACTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	37	51	+	12.0517	3.01e-05	0.00874	GTCCCGCCCAGGGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	37	51	+	12.0517	3.01e-05	0.00874	GTCCCGCCCAGGGCA
SP2	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	92	106	+	12.0517	3.01e-05	0.00874	CCTCCGCCCCATGCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	93	107	+	12.0517	3.01e-05	0.00874	GCTCCGCTCCCCGGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	93	107	+	12.0517	3.01e-05	0.00874	GCTCCGCTCCCCGGC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	8	22	-	12.0517	3.01e-05	0.00874	GCTCCGCTCCCCGGC
SP2	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	9	23	-	12.0517	3.01e-05	0.00874	CCTCCGCCCCATGCT
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	41	55	-	11.8545	3.01e-05	0.0988	TCTCCCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	41	55	-	11.8545	3.01e-05	0.0988	TCTCCCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	41	55	-	11.8545	3.01e-05	0.0988	TCTCCCCCGCGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	41	55	-	11.8545	3.01e-05	0.0988	TCTCCCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	41	55	-	11.8545	3.01e-05	0.0988	TCTCCCCCGCGGCGG
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	5	18	-	10.5758	3.01e-05	0.253	GGGCCACGTGCTCA
EHF	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	37	48	+	11.9016	3.01e-05	0.118	GACCCGGAAACA
EHF	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	78	-	11.9016	3.01e-05	0.118	GACCCGGAAACA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	21	+	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	40	+	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	58	+	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	70	+	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	110	+	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	15	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	15	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	22	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	28	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	40	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	40	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	45	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	55	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	55	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	58	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	58	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	58	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	58	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	58	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	59	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	59	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	60	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
MAX::MYC	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	85	-	12.1837	3.01e-05	0.285	GGTCACGTGGC
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	85	97	+	11.6393	3.01e-05	0.506	TAATGTTGCAATA
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	85	97	+	11.6393	3.01e-05	0.506	TAATGTTGCAATA
TCF7L2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	25	38	+	12.5455	3.01e-05	1	TGACATCAAAGTGT
TCF7L2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	25	38	+	12.5455	3.01e-05	1	TGACATCAAAGTGT
POU6F2	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	20	29	+	12.7273	3.01e-05	1	AGCTCATTAG
POU6F2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	86	95	-	12.7273	3.01e-05	1	AGCTCATTAG
POU6F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	86	95	-	12.7273	3.01e-05	1	AGCTCATTAG
POU6F2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	86	95	-	12.7273	3.01e-05	1	AGCTCATTAG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	67	80	-	10.2459	3.01e-05	0.176	CGCCCCCCGCCAGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	67	80	-	10.2459	3.01e-05	0.176	CGCCCCCCGCCAGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	67	80	-	10.2459	3.01e-05	0.176	CGCCCCCCGCCAGC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	67	80	-	10.2459	3.01e-05	0.176	CGCCCCCCGCCAGC
GLIS2	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	110	-	10.2459	3.01e-05	0.176	CACCCCCGGCGGCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	96	109	+	10.2459	3.01e-05	0.176	TACCCCCCGCCCCC
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	12.8636	3.02e-05	0.247	AGCACGTGCG
MNT	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	12.8636	3.02e-05	0.247	AGCACGTGCG
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	12.8636	3.02e-05	0.247	AGCACGTGCG
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	12.8636	3.02e-05	0.247	AGCACGTGCG
ETV6	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	20	29	+	12.5769	3.02e-05	0.0838	CTCGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	12.5769	3.02e-05	0.0838	CCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	86	95	-	12.5769	3.02e-05	0.0838	CTCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	86	95	-	12.5769	3.02e-05	0.0838	CTCGGAAGTG
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	1	15	+	12.036	3.02e-05	0.149	GTGTGGGAAAGGGAA
MAFK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	51	65	+	12.5778	3.02e-05	0.796	AAGAGTCAGCACCAA
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	51	65	+	12.5778	3.02e-05	0.796	AAGAGTCAGCACCAA
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	51	65	+	12.5778	3.02e-05	0.796	AAGAGTCAGCACCAA
ZIC1	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	11	24	-	8.7234	3.02e-05	0.0959	CAAACCCCGCCGTG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	84	97	+	8.7234	3.02e-05	0.0959	TCCACCCTGCTGTC
ZIC1	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	91	104	+	8.7234	3.02e-05	0.0959	CAAACCCCGCCGTG
MEF2D	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	-	9.10909	3.02e-05	0.675	GCTAATTATAGT
ZNF740	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	35	44	+	12.0734	3.02e-05	0.047	GCCCCCCCTT
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	10	19	-	12.0734	3.02e-05	0.047	GCCCCCCCTT
ZNF740	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	71	80	-	12.0734	3.02e-05	0.047	GCCCCCCCTT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	18	28	+	12.9388	3.02e-05	0.167	TTGTGAGTCAG
REL	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	27	36	-	12.2828	3.02e-05	0.265	GGGAGATTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	91	100	-	12.2828	3.02e-05	0.265	GGGAGATTCC
CDX2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	5	15	+	12.9153	3.02e-05	1	ATGCCATAAAC
CDX2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	50	60	-	12.9153	3.02e-05	1	ATGCCATAAAC
TBP	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	48	62	+	12.0139	3.02e-05	0.417	CTATAAAAGCAAAAG
TBP	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	53	67	-	12.0139	3.02e-05	0.417	CTATAAAAGCAAAAG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	60	70	+	12.2727	3.02e-05	0.12	ACCAGGAAGAA
ELF5	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	53	63	-	12.2727	3.02e-05	0.12	ACCAGGAAGAA
RFX5	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	-	8.81034	3.02e-05	0.186	GGTTGCCCGGGCAATG
RFX5	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	+	8.81034	3.02e-05	0.186	GGTTGCCCGGGCAATG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	15	28	-	8	3.02e-05	0.0647	GGGGGGCAGGGTGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	15	28	-	8	3.02e-05	0.0647	GGGGGGCAGGGTGG
PLAG1	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	31	44	+	8	3.02e-05	0.0647	GGGGGGCAGGGTGG
PLAG1	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	71	84	-	8	3.02e-05	0.0647	GGGGGGCAGGGTGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	87	100	+	8	3.02e-05	0.0647	GGGGGGCAGGGTGG
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	85	97	-	11.7	3.02e-05	0.729	TATCCAGTTGTTA
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	85	97	-	11.7	3.02e-05	0.729	TATCCAGTTGTTA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	31	42	+	12.2581	3.02e-05	0.281	CCGCCCACCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	31	42	+	12.2581	3.02e-05	0.281	CCGCCCACCGCG
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	73	84	-	12.2581	3.02e-05	0.281	CCGCCCACCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	27	41	+	8.87931	3.02e-05	0.034	CTCCGCCCACTCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	55	65	+	12.0517	3.02e-05	0.0133	CCCACCCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	67	77	+	12.0517	3.02e-05	0.0133	CCCACCCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	67	77	+	12.0517	3.02e-05	0.0133	CCCACCCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	68	78	-	12.0517	3.02e-05	0.0133	CCCACCCCCCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	42	+	11.9038	3.02e-05	0.0154	GCCCCGCCTCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	42	+	11.9038	3.02e-05	0.0154	GCCCCGCCTCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	34	47	-	11.9038	3.02e-05	0.0154	GCCCCGCCCCTGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	34	47	-	11.9038	3.02e-05	0.0154	GCCCCGCCCCTGGG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	47	60	-	11.9038	3.02e-05	0.0154	GCCCCGCCCCTGGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	47	60	-	11.9038	3.02e-05	0.0154	GCCCCGCCCCTGGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	83	96	+	11.9038	3.02e-05	0.0154	TCTCCACCTCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	89	102	-	11.9038	3.02e-05	0.0154	CTTCCTCCTCCACA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	89	102	-	11.9038	3.02e-05	0.0154	CTTCCTCCTCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	89	102	-	11.9038	3.02e-05	0.0154	CTTCCTCCTCCACA
EGR1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	99	112	-	11.9038	3.02e-05	0.0154	CCGCCGCCGCCATC
TFE3	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	11.9796	3.02e-05	0.107	CGCACGTGCC
TFE3	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	11.9796	3.02e-05	0.107	CGCACGTGCC
TFE3	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	11.9796	3.02e-05	0.107	CGCACGTGCC
TFE3	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	11.9796	3.02e-05	0.107	CGCACGTGCC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	11.9796	3.02e-05	0.107	ACCACGTGAG
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	+	12.617	3.02e-05	0.173	GATGACTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	+	12.617	3.02e-05	0.173	GATGACTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	+	12.617	3.02e-05	0.173	GATGACTCACA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	+	12.617	3.02e-05	0.173	GATGACTCACA
Myog	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	10	20	-	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	54	+	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	54	+	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	54	+	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	54	+	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	41	51	-	13.2041	3.02e-05	0.123	AGCAGCTGGCA
Myog	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	105	+	13.2041	3.02e-05	0.123	CGCAGCTGGCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	87	97	-	13.2041	3.02e-05	0.123	GGCAGCTGGCT
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	87	97	-	13.2041	3.02e-05	0.123	GGCAGCTGGCT
BCL6B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	18	34	-	-12.1429	3.02e-05	0.94	TGCGTTCTGGGAATTGT
BCL6B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	18	34	-	-12.1429	3.02e-05	0.94	TGCGTTCTGGGAATTGT
BCL6B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	54	70	-	-12.1429	3.02e-05	0.94	TGCGTTCTGGGAATTGT
BCL6B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	54	70	-	-12.1429	3.02e-05	0.94	TGCGTTCTGGGAATTGT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	57	77	-	11.1837	3.02e-05	0.0122	GAGGGAAGGAGAAAGGAGCGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	57	77	-	11.1837	3.02e-05	0.0122	GAGGGAAGGAGAAAGGAGCGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	57	77	-	11.1837	3.02e-05	0.0122	GAGGGAAGGAGAAAGGAGCGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	57	77	-	11.1837	3.02e-05	0.0122	GAGGGAAGGAGAAAGGAGCGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	57	77	-	11.1837	3.02e-05	0.0122	GAGGGAAGGAGAAAGGAGCGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	9	29	+	11.1837	3.02e-05	0.0122	CGGGCTGGGCGGGGGAGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	24	44	+	11.1837	3.02e-05	0.0122	CGAGGAGGAAGAAGAGGGTTT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	28	45	+	-10.4605	3.02e-05	0.0337	GGGAGGCCGGGAGGAGGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	70	87	-	-10.4605	3.02e-05	0.0337	GGGAGGCCGGGAGGAGGA
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	68	-	11.9483	3.02e-05	0.961	GTGATGCTAATTAT
SP4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	15	31	+	6.67273	3.02e-05	0.0204	GCGGCCCCGCCCCGGGC
SP4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	16	32	+	6.67273	3.02e-05	0.0204	CCGGCCCCGGCCCCGCC
SP4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	70	86	+	6.67273	3.02e-05	0.0204	GCGGCCCCGCCCCGGGC
SP4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	29	45	-	6.67273	3.02e-05	0.0204	GCGGCCCCGCCCCGGGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	69	85	-	6.67273	3.02e-05	0.0204	CCGGCCCCGGCCCCGCC
SP4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	83	99	-	6.67273	3.02e-05	0.0204	CCGGCCCCGGCCCCGCC
SP4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	84	100	-	6.67273	3.02e-05	0.0204	GCGGCCCCGCCCCGGGC
DUXA	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	69	81	+	12.5161	3.02e-05	1	CTGATCTCATCAA
DUXA	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	98	110	+	12.5161	3.02e-05	1	CTGATCTCATCAA
DUXA	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	5	17	-	12.5161	3.02e-05	1	CTGATCTCATCAA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	41	51	+	12.4697	3.02e-05	0.0428	AGGCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	41	51	+	12.4697	3.02e-05	0.0428	AGGCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	41	51	+	12.4697	3.02e-05	0.0428	AGGCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	41	51	+	12.4697	3.02e-05	0.0428	AGGCCCACCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	64	74	-	12.4697	3.02e-05	0.0428	AGGCCCACCCA
SP1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	18	28	+	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	26	36	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	17	27	-	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	29	39	+	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	23	33	-	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	32	42	-	12.5192	3.02e-05	0.0099	GTTCCGCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	49	59	+	12.5192	3.02e-05	0.0099	TTTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	56	66	-	12.5192	3.02e-05	0.0099	TTTCCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	56	66	-	12.5192	3.02e-05	0.0099	TTTCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	56	66	-	12.5192	3.02e-05	0.0099	TTTCCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	66	76	+	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	70	80	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	71	81	-	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	71	81	-	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
SP1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	73	83	-	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	93	103	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	93	103	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	93	103	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	93	103	+	12.5192	3.02e-05	0.0099	TCTCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	87	97	-	12.5192	3.02e-05	0.0099	GCTCCGCCTTC
POU3F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	14	25	+	12.2258	3.02e-05	1	ATATGTAAATCT
POU3F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	14	25	+	12.2258	3.02e-05	1	ATATGTAAATCT
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	58	75	-	1.82759	3.02e-05	0.653	ACCGTGACGTAACACGTC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	12.4483	3.03e-05	0.0999	TCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	12.4483	3.03e-05	0.0999	TCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	12.4483	3.03e-05	0.0999	TCCGGAAGTT
PAX5	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	55	73	+	11.9355	3.03e-05	0.137	GTGCGCTGCCGGGCGAGTC
PAX5	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	42	60	-	11.9355	3.03e-05	0.137	GTGCGCTGCCGGGCGAGTC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	63	78	+	6	3.03e-05	0.312	GGGGTCGAAGGGCACG
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	63	78	+	6	3.03e-05	0.312	GGGGTCGAAGGGCACG
MLXIPL	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	+	12.9394	3.03e-05	0.181	CTCACGTGAT
MLXIPL	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	-	12.9394	3.03e-05	0.181	CTCACGTGAT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	54	+	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	49	60	+	12.4364	3.03e-05	0.0548	TCCCCGCAGCCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	55	66	-	12.4364	3.03e-05	0.0548	TCCCCGCAGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	61	72	-	12.4364	3.03e-05	0.0548	TGCCCGCGGCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	9	20	+	12.1579	3.03e-05	0.0238	CCCCCCCCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	12	23	+	12.1579	3.03e-05	0.0238	GCCCCGGCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	57	+	12.1579	3.03e-05	0.0238	GTCCCGCCCACT
SP8	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	35	46	-	12.1579	3.03e-05	0.0238	CCTACGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	36	47	-	12.1579	3.03e-05	0.0238	GCCCCGGCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	68	79	+	12.1579	3.03e-05	0.0238	GCCCCGGCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	58	69	-	12.1579	3.03e-05	0.0238	GTCCCGCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	69	80	+	12.1579	3.03e-05	0.0238	CCTACGCCCCCA
FOXC1	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	33	43	-	12.5	3.03e-05	1	TGAGTCAACAT
Znf423	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	42	56	-	7.92135	3.03e-05	0.201	CCACCCCGAGGGGTC
Znf423	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	59	73	+	7.92135	3.03e-05	0.201	CCACCCCGAGGGGTC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	75	89	-	11.4697	3.03e-05	0.262	GAGTATGACTAAGGA
NRL	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	32	42	+	11.5385	3.03e-05	0.776	AAAGTGCTGAT
NRL	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	49	59	-	11.5385	3.03e-05	0.776	AAAGTGCTGAT
NRL	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	63	73	-	11.5385	3.03e-05	0.776	AAAGTGCTGAT
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	11	24	-	12.4545	3.03e-05	0.0417	CCTCGCGAGGCCTC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	-	12.0408	3.03e-05	0.146	GGCCTGCGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	-	12.0408	3.03e-05	0.146	GGCCTGCGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	-	12.0408	3.03e-05	0.146	GGCCTGCGGGCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	-	12.0408	3.03e-05	0.146	GGCCTGCGGGCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	51	64	-	5.85455	3.03e-05	0.145	TGAAGGAGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	51	64	-	5.85455	3.03e-05	0.145	TGAAGGAGGAAGTC
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	51	64	-	5.85455	3.03e-05	0.145	TGAAGGAGGAAGTC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	16	26	+	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	16	26	+	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	16	26	+	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	16	26	+	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	34	44	-	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	34	44	-	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	34	44	-	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	66	76	-	12.7414	3.03e-05	0.0451	GGGCGCGAGCG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	70	84	-	9.60526	3.03e-05	0.196	TCGGTGAGTCGGCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	70	84	-	9.60526	3.03e-05	0.196	TCGGTGAGTCGGCGG
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	5	16	-	12.3636	3.03e-05	1	TGGCATATGTTT
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	49	60	+	12.3636	3.03e-05	1	TGGCATATGTTT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	15	24	+	12.2959	3.03e-05	0.0152	AGGGTGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	12	21	-	12.2959	3.03e-05	0.0152	AGGGTGGGTC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	12	21	-	12.2959	3.03e-05	0.0152	AGGGTGGGTC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	58	67	-	12.2959	3.03e-05	0.0152	AGGGTGGGTC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	36	45	-	12.3462	3.03e-05	0.765	ATTACGAAAT
CEBPD	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	+	12.3462	3.03e-05	0.765	GTGGCGCAAC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	21	31	+	9.89091	3.03e-05	0.862	TCCAAGGTGAA
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	21	31	+	9.89091	3.03e-05	0.862	TCCAAGGTGAA
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	39	58	+	6.2844	3.03e-05	0.0482	TCCCCACTCCCCCCACCCCA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	18	32	+	10.4098	3.03e-05	0.0469	GGCCCCACCCAGCAG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	28	42	-	10.4098	3.03e-05	0.0469	GGCCCCACCCAGCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	26	39	-	10.8103	3.03e-05	0.0264	AGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	26	39	-	10.8103	3.03e-05	0.0264	AGCCCCGCCCCTGG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	32	45	-	10.8103	3.03e-05	0.0264	TGCCCCCCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	76	89	+	10.8103	3.03e-05	0.0264	AGCCCCGCCCCTGG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	36	46	-	12.5102	3.03e-05	0.2	CTTCAGGGAAG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	16	30	+	12.027	3.03e-05	0.149	ACAGGCTAGAGGTCA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	25	39	+	12.027	3.03e-05	0.149	CGGGGAGAAAGGGCG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	76	-	12.027	3.03e-05	0.149	ACAGGCTAGAGGTCA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	76	90	-	12.027	3.03e-05	0.149	CGGGGAGAAAGGGCG
EMX1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	29	38	-	10.885	3.03e-05	1	ACTAATGACC
EMX1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	77	86	+	10.885	3.03e-05	1	ACTAATGACC
OLIG3	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	12.2759	3.04e-05	1	ACCATATGTA
CENPB	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	44	58	+	11.9423	3.04e-05	0.793	CCCGCTTCGACCGGA
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	18	31	-	7.9898	3.04e-05	0.0647	GGGGCACTCTGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	84	97	+	7.9898	3.04e-05	0.0647	GGGGCACTCTGGGA
HES5	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	-	5.96552	3.04e-05	0.296	AGGCATGTGTCA
HES5	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	+	5.96552	3.04e-05	0.296	AGGCATGTGTCA
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	26	36	-	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	68	78	-	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	68	78	-	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	95	105	-	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	+	12.5192	3.04e-05	0.0703	TGCCCGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	+	12.5192	3.04e-05	0.0703	TGCCCGAGGCC
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	10	20	+	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	+	12.5192	3.04e-05	0.0703	TGCCCGAGGCC
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	37	47	+	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	79	89	+	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	79	89	+	12.5192	3.04e-05	0.0703	TCCCTCAGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	35	+	12.0656	3.04e-05	0.064	CGCCCGGAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	+	12.0656	3.04e-05	0.064	GCCCTCTGGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	+	12.0656	3.04e-05	0.064	GCCCTCTGGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	78	-	12.0656	3.04e-05	0.064	CGCCCAAAGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	78	-	12.0656	3.04e-05	0.064	CGCCCAAAGGGCA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	20	+	8.86207	3.04e-05	0.034	CCCCCCCCCCCCACA
EGR3	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	32	46	+	8.86207	3.04e-05	0.034	CTCCGCCCCGGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	69	83	-	8.86207	3.04e-05	0.034	CTCCGCCCCGGCCCC
EGR4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	17	32	+	11.7091	3.04e-05	0.0374	GACCGCCCACCCGGGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	26	41	+	11.7091	3.04e-05	0.0374	CTCCGCCCCCCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	38	53	-	11.7091	3.04e-05	0.0374	CTCCGCCCCCCCCGCC
EGR4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	83	98	-	11.7091	3.04e-05	0.0374	GACCGCCCACCCGGGC
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	5.36735	3.04e-05	1	TGACAAGTGCCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	5.36735	3.04e-05	1	TGACAAGTGCCA
ESR2	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	20	34	+	12.0962	3.04e-05	0.426	AGGTCACACGGACAG
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	53	67	-	12.0962	3.04e-05	0.426	AGGGCAGCCTGCTTT
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	53	67	-	12.0962	3.04e-05	0.426	AGGGCAGCCTGCTTT
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	53	67	-	12.0962	3.04e-05	0.426	AGGGCAGCCTGCTTT
ESR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	81	95	-	12.0962	3.04e-05	0.426	AGGTCACACGGACAG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	81	95	-	12.0962	3.04e-05	0.426	AGGTCACACGGACAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	13	26	-	8.70213	3.04e-05	0.0959	GCCGCCCCGCCGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	13	26	-	8.70213	3.04e-05	0.0959	GCCGCCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	13	26	-	8.70213	3.04e-05	0.0959	GCCGCCCCGCCGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	13	26	-	8.70213	3.04e-05	0.0959	GCCGCCCCGCCGGG
FOXC2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	80	91	+	12.3861	3.04e-05	1	ACAGTAAACAAA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	6	20	+	12.0345	3.04e-05	0.00878	TTCCCTCCTCCTCTT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	6	20	+	12.0345	3.04e-05	0.00878	TTCCCTCCTCCTCTT
SP2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	19	33	+	12.0345	3.04e-05	0.00878	CCCCCACCTCGCCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	35	49	+	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	35	49	+	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	35	49	+	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	35	49	+	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	34	48	-	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	34	48	-	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	34	48	-	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	34	48	-	12.0345	3.04e-05	0.00878	CTCCTGCCCTCCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	95	109	-	12.0345	3.04e-05	0.00878	TTCCCTCCTCCTCTT
SP4	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	18	34	+	6.65455	3.04e-05	0.0204	GTCGCCCCTCCCCTGCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	62	78	+	6.65455	3.04e-05	0.0204	TCTGCCCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	62	78	+	6.65455	3.04e-05	0.0204	TCTGCCCCGCCCCGCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	62	78	+	6.65455	3.04e-05	0.0204	TCTGCCCCGCCCCGCCG
SP4	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	81	97	+	6.65455	3.04e-05	0.0204	CCCACCCCGCCCTCCCA
SP4	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	18	34	-	6.65455	3.04e-05	0.0204	CCCACCCCGCCCTCCCA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	60	80	+	10.871	3.04e-05	0.157	ACCTGCTTTCTGTTTTGCGCA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	60	80	+	10.871	3.04e-05	0.157	ACCTGCTTTCTGTTTTGCGCA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	2	22	-	10.871	3.04e-05	0.157	ACCTGCTTTCTGTTTTGCGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	8	18	-	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	8	18	-	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	94	104	-	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	98	108	-	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	14	+	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	14	+	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	14	+	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	14	+	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	21	+	12.6545	3.04e-05	0.0506	TGCCCCCGGCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	11	21	+	12.1626	3.04e-05	0.0165	CACACTCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	32	42	-	12.1626	3.04e-05	0.0165	CCACCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	32	42	-	12.1626	3.04e-05	0.0165	CCACCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	32	42	-	12.1626	3.04e-05	0.0165	CCACCGCCCCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	+	11.931	3.04e-05	0.0554	GGCCTGGGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	+	11.931	3.04e-05	0.0554	GGCCTGGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	+	11.931	3.04e-05	0.0554	GGCCCTGCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	+	11.931	3.04e-05	0.0554	GGCCCTGCCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	+	11.931	3.04e-05	0.0554	GGCCCTGCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	+	11.931	3.04e-05	0.0554	GGCCCTGCCGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	-	11.931	3.04e-05	0.0554	GGCCTGGGGGGCG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	35	49	+	10.1429	3.04e-05	0.101	GCCGCCCCGCTTTGC
ZIC3	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	76	90	-	10.1429	3.04e-05	0.101	TGCCCCCTTCTGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	20	34	+	11.8364	3.04e-05	0.0989	GGCCACACACTGCGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	20	34	+	11.8364	3.04e-05	0.0989	GGCCACACACTGCGC
GBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	11.8511	3.04e-05	1	GCCAATTAGA
GBX2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	11.8511	3.04e-05	1	GCCAATTAGA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	52	71	+	6.27523	3.04e-05	0.0482	CCCGCCCCCCCCCCCCGCCG
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	+	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	+	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	-	12.5957	3.04e-05	0.173	AGTGAGTCAGC
RUNX1	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	29	39	-	12.3448	3.04e-05	0.215	TGTTGTGGTTA
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	41	51	+	12.3448	3.04e-05	0.215	ACCTGTGGTCT
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	41	51	+	12.3448	3.04e-05	0.215	ACCTGTGGTCT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	76	86	+	12.3448	3.04e-05	0.215	TGTTGTGGTTA
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	76	86	+	12.3448	3.04e-05	0.215	TGTTGTGGTTA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	76	86	+	12.3448	3.04e-05	0.215	TGTTGTGGTTA
Vdr	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	77	92	-	6.7377	3.04e-05	0.822	CAGGTCAGCAAGGGCA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	30	40	+	12.898	3.04e-05	0.167	CTGTGAGTCAT
EOMES	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	25	37	+	12.378	3.04e-05	1	GAGGTGTGACTGA
EOMES	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	78	90	-	12.378	3.04e-05	1	GAGGTGTGACTGA
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	92	106	-	12.4468	3.04e-05	0.311	GAGTGTGAGGTCATT
NFYA	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	1	18	-	11.0488	3.04e-05	0.115	AGCCTCTTCATTGGCTGC
NFYA	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	91	108	+	11.0488	3.04e-05	0.115	AGCCTCTTCATTGGCTGC
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	100	109	+	12.7191	3.04e-05	0.871	GTGGGGTGAG
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	100	109	+	12.7191	3.04e-05	0.871	GTGGGGTGAG
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	100	109	+	12.7191	3.04e-05	0.871	GTGGGGTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	100	109	+	12.7191	3.04e-05	0.871	GTGGGGTGAG
SREBF2	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	94	103	-	12.7191	3.04e-05	0.871	GTGGGGTGAG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	87	98	+	12.3163	3.05e-05	0.0857	TCCCCCCGGGCC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	+	12.8727	3.05e-05	0.164	GGTGAGTCACT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	+	12.8727	3.05e-05	0.164	GGTGAGTCACT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	-	12.8727	3.05e-05	0.164	GGTGAGTCACT
Arntl	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	5	14	+	12.5738	3.05e-05	0.183	GCTCACGTGT
Arntl	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	37	46	+	12.5738	3.05e-05	0.183	GCTCACGTGT
Arntl	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	69	78	-	12.5738	3.05e-05	0.183	GCTCACGTGT
DBP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	+	12.8868	3.05e-05	1	GGTGACGTAACC
DBP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	+	12.8868	3.05e-05	1	GGTGACGTAACC
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	+	12.8868	3.05e-05	1	GGTGACGTAACC
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	+	12.8868	3.05e-05	1	GGTGACGTAACC
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	38	54	-	5.80328	3.05e-05	0.563	GGGGCTCGGGGAGGTCA
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	46	60	+	10.6393	3.05e-05	0.348	GTGAGTCAGCGGCCA
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	46	60	+	10.6393	3.05e-05	0.348	GTGAGTCAGCGGCCA
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	10	23	-	11.8846	3.05e-05	0.0154	GTCCCGCCCTCTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	19	32	-	11.8846	3.05e-05	0.0154	GCCCCACCCCTTCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	19	32	-	11.8846	3.05e-05	0.0154	GCCCCACCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	19	32	-	11.8846	3.05e-05	0.0154	GCCCCACCCCTTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	19	32	-	11.8846	3.05e-05	0.0154	GCCCCACCCCTTCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	21	34	-	11.8846	3.05e-05	0.0154	CACCCGCCCACATG
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	37	50	-	11.8846	3.05e-05	0.0154	CACCCGCCCACATG
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	65	78	+	11.8846	3.05e-05	0.0154	CACCCGCCCACATG
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	75	88	+	11.8846	3.05e-05	0.0154	CCTCCACTCACTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	81	94	+	11.8846	3.05e-05	0.0154	CACCCGCCCACATG
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	92	105	+	11.8846	3.05e-05	0.0154	GTCCCGCCCTCTCG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	14	-	12.6545	3.05e-05	0.0486	CAACTTCCGGA
ETV3	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.4225	3.05e-05	0.104	TCCGGAAGTC
ETV3	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.4225	3.05e-05	0.104	TCCGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.4225	3.05e-05	0.104	TCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.4225	3.05e-05	0.104	TCCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.4225	3.05e-05	0.104	TCCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.4225	3.05e-05	0.104	TCCGGAAGTC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	38	48	+	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	43	53	+	12.5082	3.05e-05	0.0451	GCGGAAGTCCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	60	70	-	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	60	70	-	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	62	72	-	12.5082	3.05e-05	0.0451	GCGGAAGTCCG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	62	72	-	12.5082	3.05e-05	0.0451	GCGGAAGTCCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	75	85	+	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	75	85	+	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	75	85	+	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	67	77	-	12.5082	3.05e-05	0.0451	CCGGAAGTCTC
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	77	89	+	11.6061	3.05e-05	0.646	GGTAATGTTTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	77	89	+	11.6061	3.05e-05	0.646	GGTAATGTTTAAC
Mecom	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	45	58	+	10.7191	3.05e-05	1	GTTACAAGATAAGG
CTCF	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	2	20	-	10.4918	3.05e-05	0.0974	TGACCAGCCGGGGTCACGT
CTCF	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	5	23	-	10.4918	3.05e-05	0.0974	TGGCCTCCAGTGGTCAGAC
CTCF	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	31	49	+	10.4918	3.05e-05	0.0974	AGGCCGGGAGGAGGAGGCG
CTCF	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	83	101	+	10.4918	3.05e-05	0.0974	GAACCAGCAGGGGCCGAAG
CTCF	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	66	84	-	10.4918	3.05e-05	0.0974	AGGCCGGGAGGAGGAGGCG
CTCF	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	92	110	+	10.4918	3.05e-05	0.0974	TGGCCTCCAGTGGTCAGAC
CTCF	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	95	113	+	10.4918	3.05e-05	0.0974	TGACCAGCCGGGGTCACGT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	12.4364	3.05e-05	0.0895	ACCGGAACTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	12.4364	3.05e-05	0.0895	ACCGGAACTA
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	20	33	+	12.1408	3.05e-05	0.214	CTAAACAGGAAGCC
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	20	33	+	12.1408	3.05e-05	0.214	CTAAACAGGAAGCC
RELA	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	10	19	+	12.4796	3.05e-05	0.199	TGGAATTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	30	39	-	12.4796	3.05e-05	0.199	TGGAATTCCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	61	70	+	12.4796	3.05e-05	0.199	TGGAATTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	61	70	+	12.4796	3.05e-05	0.199	TGGAATTCCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	100	109	+	12.4796	3.05e-05	0.199	TGGAATTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	100	109	+	12.4796	3.05e-05	0.199	TGGAATTCCC
SREBF2(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	11.4182	3.05e-05	0.208	GTCGCGTGAC
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	99	108	-	11.4182	3.05e-05	0.208	CTCACCTGAC
ELF3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	28	40	+	10.4138	3.05e-05	0.132	GTGCCGGAAGTCA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	13	27	-	10.3934	3.05e-05	0.0472	CGCCACACCCCCAAC
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	90	105	-	4.65517	3.05e-05	0.299	TACCCACCAAGCCAAA
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	14	27	-	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
Zfx	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	88	101	+	12.4394	3.06e-05	0.0417	GCCGTCTGGGCCTT
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	13	26	+	4.01515	3.06e-05	0.139	CAGTGACGTCAGAG
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	13	26	+	4.01515	3.06e-05	0.139	CAGTGACGTCAGAG
BATF3	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	94	107	+	4.01515	3.06e-05	0.139	CAGTGACGTCAGAG
BATF3	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	8	21	-	4.01515	3.06e-05	0.139	CAGTGACGTCAGAG
BATF3	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	89	102	-	4.01515	3.06e-05	0.139	CAGTGACGTCAGAG
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	+	12.3818	3.06e-05	0.0893	AGCCCGGGGCCA
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	-	12.3818	3.06e-05	0.0893	AGCCCGGGGCCA
EGR3	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	17	31	+	8.84483	3.06e-05	0.0341	GACCGCCCACCCGGG
EGR3	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	84	98	-	8.84483	3.06e-05	0.0341	GACCGCCCACCCGGG
GLI2	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	80	91	+	11.9138	3.06e-05	0.33	GGGCCCACCCAG
ELF5	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	38	48	+	12.2545	3.06e-05	0.12	ACCCGGAAACA
ELF5	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	77	-	12.2545	3.06e-05	0.12	ACCCGGAAACA
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	64	81	+	12.3636	3.06e-05	0.915	ACTATCAGCCCCACCCAC
GATA1::TAL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	64	81	+	12.3636	3.06e-05	0.915	ACTATCAGCCCCACCCAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	64	81	+	12.3636	3.06e-05	0.915	ACTATCAGCCCCACCCAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	64	81	+	12.3636	3.06e-05	0.915	ACTATCAGCCCCACCCAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	18	38	-	11.1633	3.06e-05	0.0123	GGAGGAGGCCCGCCGGAAGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	30	50	-	11.1633	3.06e-05	0.0123	GGGGCGGGAGGAGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	30	50	-	11.1633	3.06e-05	0.0123	GGGGCGGGAGGAGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	44	64	-	11.1633	3.06e-05	0.0123	GAAGGGGTGGGAGGCAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	56	76	-	11.1633	3.06e-05	0.0123	GAGGGCGAGGAGGAGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	64	84	-	11.1633	3.06e-05	0.0123	GAGGAAAGAGGAAGGGAGGCA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	66	86	-	11.1633	3.06e-05	0.0123	GAATGAGGAAGAAGCAAAAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	66	86	-	11.1633	3.06e-05	0.0123	GAATGAGGAAGAAGCAAAAGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	40	60	+	11.1633	3.06e-05	0.0123	GGGGGCTGAGATTGGAGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	77	97	+	11.1633	3.06e-05	0.0123	GGAGGAGGCCCGCCGGAAGAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	53	66	+	10.7931	3.06e-05	0.0264	CGTCCCGCCCCTCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	53	66	+	10.7931	3.06e-05	0.0264	CGTCCCGCCCCTCG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	67	80	-	10.7931	3.06e-05	0.0264	TGACCCGCCCTCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	92	105	+	10.7931	3.06e-05	0.0264	CGTCCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	92	105	+	10.7931	3.06e-05	0.0264	CGTCCCGCCCCTCG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	63	81	-	11.9194	3.06e-05	0.137	TCGCCCAGTGGGGCGGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	63	81	-	11.9194	3.06e-05	0.137	TCGCCCAGTGGGGCGGGGC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	25	37	-	10.5303	3.06e-05	0.231	GGGGAAGTCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	45	57	-	10.5303	3.06e-05	0.231	GGGGAAGTCCCCG
NFKB2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	58	70	+	10.5303	3.06e-05	0.231	GGGGAAGTCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	78	90	+	10.5303	3.06e-05	0.231	GGGGAAGTCCCCG
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	64	73	-	12.8689	3.06e-05	0.242	CGTGACGTAA
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	2	12	-	12.3684	3.06e-05	1	GAAATAAATCA
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	74	83	+	12.431	3.06e-05	0.859	TCCACCTGTC
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	74	83	+	12.431	3.06e-05	0.859	TCCACCTGTC
ETV2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	56	-	12.2787	3.06e-05	0.136	CAGCGGAAATG
NFATC1	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	33	42	-	10.8862	3.06e-05	0.956	ATTTTCCGCC
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	73	82	+	10.8862	3.06e-05	0.956	ATTTTCCGCC
NFATC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	73	82	+	10.8862	3.06e-05	0.956	ATTTTCCGCC
NFATC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	73	82	+	10.8862	3.06e-05	0.956	ATTTTCCGCC
NFATC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	73	82	+	10.8862	3.06e-05	0.956	ATTTTCCGCC
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	87	96	-	13.1346	3.06e-05	0.404	TGCACCTGCA
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	87	96	-	13.1346	3.06e-05	0.404	TGCACCTGCA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	52	-	11.8689	3.06e-05	0.118	GGCCCGGAAGTC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	28	37	+	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	28	37	+	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	28	37	+	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	28	37	+	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	80	89	+	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	26	35	-	11.9633	3.06e-05	0.047	ACCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	30	39	-	11.9633	3.06e-05	0.047	ACCCCCCCCG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	13	26	+	7.96939	3.06e-05	0.0647	GGGGCCAGCTGGGA
MAFK	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	57	71	+	12.5556	3.06e-05	0.796	TGGAGTCAGCAGAAA
MAFK	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	44	58	-	12.5556	3.06e-05	0.796	TGGAGTCAGCAGAAA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	37	+	12.0492	3.06e-05	0.064	GGCCCCGGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	22	34	-	12.0492	3.06e-05	0.064	GGCCCCGGGGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	22	34	-	12.0492	3.06e-05	0.064	GGCCCCGGGGGGC
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	42	54	-	12.0492	3.06e-05	0.064	TGCCCGGCGGGGC
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	73	+	12.0492	3.06e-05	0.064	TGCCCGGCGGGGC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	93	+	12.0492	3.06e-05	0.064	GGCCCCGGGGGGC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	78	90	-	12.0492	3.06e-05	0.064	GGCCCCGGGGGGC
E2F6	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	2	12	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	20	30	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	31	41	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	32	42	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	32	42	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	24	34	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	42	52	+	12.8621	3.06e-05	0.0458	GAGAGGGAAGC
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	36	46	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	38	48	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	51	61	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	51	61	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	51	61	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	51	61	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	51	61	-	12.8621	3.06e-05	0.0458	GAGCGGGAGCA
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	51	61	-	12.8621	3.06e-05	0.0458	GAGCGGGAGCA
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	69	79	+	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	73	83	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	103	113	-	12.8621	3.06e-05	0.0458	GAGAGGGAGGG
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	+	12.0492	3.06e-05	0.0579	CGCCCTGCAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	+	12.0492	3.06e-05	0.0579	TGCCTCGGAGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	+	12.0492	3.06e-05	0.0579	TGCCTCGGAGGCG
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	-	12.0492	3.06e-05	0.0579	CGCCCTGCAGGCG
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	4	18	-	7.89888	3.06e-05	0.201	ACACCCTAGGGTTCT
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	4	18	-	7.89888	3.06e-05	0.201	ACACCCTAGGGTTCT
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	53	67	+	7.89888	3.06e-05	0.201	ACACCCTAGGGTTCT
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	53	67	+	7.89888	3.06e-05	0.201	ACACCCTAGGGTTCT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	56	76	+	10.8548	3.06e-05	0.157	TTTTGTTTTTTGTTTTTTTTT
IRF1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	39	59	-	10.8548	3.06e-05	0.157	TTTTGTTTTTTGTTTTTTTTT
MEF2B	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	47	58	+	9.52727	3.06e-05	0.618	GTTATAAATAGT
KLF13	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	31	48	-	7.2931	3.06e-05	0.199	ACACCACTCCCACTTCGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	91	102	+	12.197	3.06e-05	0.109	CCGCGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	91	102	+	12.197	3.06e-05	0.109	CCGCGTCCCCCG
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	91	102	+	12.197	3.06e-05	0.109	CCGCGTCCCCCG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	34	51	-	-10.5	3.06e-05	0.0337	GGAGGGAGGGAGGCAGCG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	35	52	-	-10.5	3.06e-05	0.0337	GGCAGTGAGAAAGGAAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	35	52	-	-10.5	3.06e-05	0.0337	GGCAGTGAGAAAGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	35	52	-	-10.5	3.06e-05	0.0337	GGCAGTGAGAAAGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	35	52	-	-10.5	3.06e-05	0.0337	GGCAGTGAGAAAGGAAAA
TBX2	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	41	51	-	12.1091	3.06e-05	1	TAGGTGTGAGT
TBX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	64	74	+	12.1091	3.06e-05	1	TAGGTGTGAGT
TBX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	64	74	+	12.1091	3.06e-05	1	TAGGTGTGAGT
TBX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	64	74	+	12.1091	3.06e-05	1	TAGGTGTGAGT
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	64	74	+	12.1091	3.06e-05	1	TAGGTGTGAGT
SP8	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	21	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	25	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	37	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	37	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	37	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	37	+	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
SP8	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	94	105	-	12.1316	3.06e-05	0.0239	ACCACGCCCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	2	12	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	15	25	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	18	28	+	11.8909	3.06e-05	0.0135	GCCCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	24	34	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	24	34	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	58	68	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	58	68	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	87	97	+	11.8909	3.06e-05	0.0135	GCCCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	90	100	+	11.8909	3.06e-05	0.0135	GAGCCTGTGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	98	108	+	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	7	17	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	13	23	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	13	23	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	18	28	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	18	28	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	30	40	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	40	50	-	11.8909	3.06e-05	0.0135	CCGCCCGCGCC
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	-	11.6531	3.06e-05	0.612	ATTACGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	18	31	-	11.6897	3.06e-05	0.174	ACCGCCCTGGTAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	18	31	-	11.6897	3.06e-05	0.174	ACCGCCCTGGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	18	31	-	11.6897	3.06e-05	0.174	ACCGCCCTGGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	18	31	-	11.6897	3.06e-05	0.174	ACCGCCCTGGTAAC
PBX1	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	64	75	+	12.3469	3.06e-05	1	ACATCAAGCAAG
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	21	34	-	12.1452	3.06e-05	0.372	GTTCCTGGACTACA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	21	34	-	12.1452	3.06e-05	0.372	GTTCCTGGACTACA
Bcl6	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	81	94	+	12.1452	3.06e-05	0.372	GTTCCTGGACTACA
ELK3	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12.4483	3.07e-05	0.0895	GCCGGAAATG
ELK3	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12.4483	3.07e-05	0.0895	GCCGGAAATG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12.4483	3.07e-05	0.0895	GCCGGAAATG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12.4483	3.07e-05	0.0895	GCCGGAAATG
ELK3	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12.4483	3.07e-05	0.0895	GCCGGAAATG
Gata4	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	25	35	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	36	46	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	39	49	-	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	66	76	+	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	69	79	+	12.9138	3.07e-05	1	TCTTATCTGGC
Gata4	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	73	83	-	12.9138	3.07e-05	1	TCTTATCTGGC
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	12.6129	3.07e-05	1	AGCATATGTT
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	12.6129	3.07e-05	1	AGCATATGTT
Atoh1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	12.6129	3.07e-05	1	AGCATATGTT
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	53	67	-	0.818182	3.07e-05	0.506	AAAGAAAGAGAAACG
IRF9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	53	67	-	0.818182	3.07e-05	0.506	AAAGAAAGAGAAACG
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	53	67	-	0.818182	3.07e-05	0.506	AAAGAAAGAGAAACG
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	53	67	-	0.818182	3.07e-05	0.506	AAAGAAAGAGAAACG
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	26	36	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	26	36	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	26	36	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	26	36	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	38	48	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	33	43	-	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	56	66	-	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	72	82	+	12.4242	3.07e-05	0.0428	CGCCACGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	79	89	-	12.4242	3.07e-05	0.0428	CGCCACGCCCC
INSM1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	84	95	+	12	3.07e-05	0.146	TGCCAGCGGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	23	37	+	12.0172	3.07e-05	0.00884	GCCCCACCCTGACCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	23	37	+	12.0172	3.07e-05	0.00884	GCCCCACCCTGACCC
SP2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	76	+	12.0172	3.07e-05	0.00884	CCCCCACCCTCGGCT
SP2	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	7	21	-	12.0172	3.07e-05	0.00884	CCTCCTCCTCCTCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	11	25	-	12.0172	3.07e-05	0.00884	CCCGCGCCCCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	11	25	-	12.0172	3.07e-05	0.00884	CCCGCGCCCCCGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	39	53	-	12.0172	3.07e-05	0.00884	CCCCCACCCTCGGCT
SP3	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	81	91	+	12.1545	3.07e-05	0.0165	CACACGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	24	34	-	12.1545	3.07e-05	0.0165	CACACGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	24	34	-	12.1545	3.07e-05	0.0165	CACACGCCTCC
GLIS3	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	18	31	+	6.48485	3.07e-05	0.379	CGCCCCCCCCGACG
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	51	64	-	6.48485	3.07e-05	0.379	AACCCCACGTGAAG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	51	64	-	6.48485	3.07e-05	0.379	AACCCCACGTGAAG
GLIS3	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	84	97	-	6.48485	3.07e-05	0.379	CGCCCCCCCCGACG
CENPB	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	47	61	-	11.9231	3.07e-05	0.793	CCCGTTTCCATAGAA
CENPB	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	54	68	+	11.9231	3.07e-05	0.793	CCCGTTTCCATAGAA
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	24	38	-	11.8182	3.07e-05	0.0994	CCCCCCCCGCCGCCG
TP53	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	11	28	+	8.69388	3.07e-05	0.979	AGCCAGCCCGGGCAGGCC
EGR4	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	18	33	+	11.6909	3.07e-05	0.0374	GCACCCCCCCGCCAAC
EGR4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	15	30	-	11.6909	3.07e-05	0.0374	CCCCACCCCCGCTCAT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	21	36	-	11.6909	3.07e-05	0.0374	GCCCGCGCACGCGCGT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	21	36	-	11.6909	3.07e-05	0.0374	GCCCGCGCACGCGCGT
EGR4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	47	62	+	11.6909	3.07e-05	0.0374	TCCCGCCCTCCCGCCC
EGR4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	55	70	+	11.6909	3.07e-05	0.0374	TCCCGCCCTCCCGCCC
EGR4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	45	60	-	11.6909	3.07e-05	0.0374	TCCCGCCCTCCCGCCC
EGR4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	53	68	-	11.6909	3.07e-05	0.0374	TCCCGCCCTCCCGCCC
EGR4	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	79	94	+	11.6909	3.07e-05	0.0374	GCCCGCGCACGCGCGT
EGR4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	85	100	+	11.6909	3.07e-05	0.0374	CCCCACCCCCGCTCAT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	-	11.9138	3.07e-05	0.0554	GGCCTGCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	-	11.9138	3.07e-05	0.0554	GGCCTGCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	-	11.9138	3.07e-05	0.0554	GGCCTGCGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	-	11.9138	3.07e-05	0.0554	GGCCTGCGGGGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	70	-	11.0164	3.07e-05	0.0881	TGACCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	70	-	11.0164	3.07e-05	0.0881	TGACCGGAAGTA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	90	-	11.0164	3.07e-05	0.0881	TGACCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	90	-	11.0164	3.07e-05	0.0881	TGACCGGAAGTA
USF2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	70	+	12.898	3.07e-05	0.095	GGCACGTGGCT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	+	12.8182	3.07e-05	0.165	AGTGACTCACT
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	34	44	+	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	43	53	+	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	70	80	+	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	35	45	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	62	72	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	71	81	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	87	97	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	87	97	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	95	105	-	11.8727	3.07e-05	0.0135	CCGCGCGCGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.5862	3.07e-05	0.0819	ACCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.5862	3.07e-05	0.0819	ACCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.5862	3.07e-05	0.0819	GCCGGAAGCA
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.5862	3.07e-05	0.0819	GCCGGAAGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	-	12.2959	3.07e-05	0.0857	GCCCCCCGGGCA
REST	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	81	101	-	7.2449	3.07e-05	0.208	CTTGGAACCTTGGAGAATGAC
REST	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	40	60	+	7.2449	3.07e-05	0.208	GTTAGCACAAAGGTCACCTCT
REST	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	40	60	+	7.2449	3.07e-05	0.208	GTTAGCACAAAGGTCACCTCT
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	82	92	-	12.8776	3.07e-05	0.167	TTGTGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	82	92	-	12.8776	3.07e-05	0.167	TTGTGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	82	92	-	12.8776	3.07e-05	0.167	TTGTGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	82	92	-	12.8776	3.07e-05	0.167	TTGTGAGTCAT
NR3C2	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	-	7.85106	3.07e-05	0.952	GGGGAGACAATGTTCTT
Nfe2l2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	24	38	-	11.4394	3.07e-05	0.262	AGCAATGAGACTGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	77	91	+	11.4394	3.07e-05	0.262	AGCAATGAGACTGCA
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	41	54	+	12.75	3.07e-05	0.183	GTGCTGTGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	41	54	+	12.75	3.07e-05	0.183	GTGCTGTGACTCAT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	12	21	+	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	12	21	+	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	12	21	+	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	12	21	+	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	13	22	+	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	12	21	-	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	12	21	-	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	12	21	-	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	12	21	-	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	13	22	-	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	22	31	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	23	32	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	23	32	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	23	32	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	23	32	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	22	31	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	32	41	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	32	41	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	23	32	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	23	32	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	23	32	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	23	32	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	32	41	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	32	41	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	47	56	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	47	56	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	47	56	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	47	56	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	59	68	+	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	66	75	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	66	75	+	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	59	68	-	10.1532	3.07e-05	0.043	AGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	74	83	+	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	66	75	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	66	75	-	10.1532	3.07e-05	0.043	GCCGCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	74	83	-	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	84	93	+	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	93	102	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	84	93	-	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	93	102	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	93	102	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	93	102	+	10.1532	3.07e-05	0.043	GGCGCGCGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	93	102	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	93	102	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	93	102	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	93	102	-	10.1532	3.07e-05	0.043	ACCGCGCGCC
STAT1::STAT2	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	54	68	+	11.3636	3.07e-05	0.276	TCGGCTTCTTTTTCC
STAT1::STAT2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	48	62	-	11.3636	3.07e-05	0.276	TCGGCTTCTTTTTCC
HOXC13	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	29	39	-	12.3387	3.07e-05	1	GCTCATAAACC
HOXC13	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	76	86	+	12.3387	3.07e-05	1	GCTCATAAACC
ATF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	19	+	11.6066	3.07e-05	0.506	TGGTGACGTAACC
ATF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	19	+	11.6066	3.07e-05	0.506	TGGTGACGTAACC
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	19	+	11.6066	3.07e-05	0.506	TGGTGACGTAACC
ATF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	19	+	11.6066	3.07e-05	0.506	TGGTGACGTAACC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	62	71	+	12.7143	3.07e-05	0.0143	TCCACGCCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	14	28	+	8.82759	3.07e-05	0.0342	CCCCGCCCCCGTCAG
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	61	71	+	12.1633	3.07e-05	0.285	AACCACGTGAC
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	48	61	+	12.6897	3.07e-05	0.213	CTTACAAGAAGAGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	48	61	+	12.6897	3.07e-05	0.213	CTTACAAGAAGAGG
GSC	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	86	95	-	12.0566	3.08e-05	1	CCTAATCCAC
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	19	33	+	12.009	3.08e-05	0.149	CCTGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	82	96	-	12.009	3.08e-05	0.149	CCTGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	82	96	-	12.009	3.08e-05	0.149	CCTGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	82	96	-	12.009	3.08e-05	0.149	CCTGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	82	96	-	12.009	3.08e-05	0.149	CCTGGGCAGGGGTTA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	6	23	+	-10.5132	3.08e-05	0.0337	GGAGGGAGCGGAAGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	6	23	+	-10.5132	3.08e-05	0.0337	GGAGGGAGCGGAAGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	6	23	+	-10.5132	3.08e-05	0.0337	GGAGGGAGCGGAAGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	6	23	+	-10.5132	3.08e-05	0.0337	GGAGGGAGCGGAAGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	6	23	+	-10.5132	3.08e-05	0.0337	GGAGGGAGCGGAAGAGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	28	45	+	-10.5132	3.08e-05	0.0337	GCGAGGGGAGGAGGAAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	70	87	-	-10.5132	3.08e-05	0.0337	GCGAGGGGAGGAGGAAGG
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	44	55	+	12.4831	3.08e-05	1	CGTCCAGCTGGT
TAL1::TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	44	55	+	12.4831	3.08e-05	1	CGTCCAGCTGGT
MNT	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	12.8182	3.08e-05	0.247	CGCACGTGCA
MNT	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	12.8182	3.08e-05	0.247	CGCACGTGCA
GLIS2	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	18	31	+	10.1967	3.08e-05	0.176	AACCCCCAGCGCCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	84	97	-	10.1967	3.08e-05	0.176	AACCCCCAGCGCCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	84	97	-	10.1967	3.08e-05	0.176	AACCCCCAGCGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	84	97	-	10.1967	3.08e-05	0.176	AACCCCCAGCGCCG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	29	39	+	12.8448	3.08e-05	0.0459	TGGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	29	39	+	12.8448	3.08e-05	0.0459	TGGAGGGAGGA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	54	-	5.8	3.08e-05	0.145	GGAAGCCGGAAGTG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	54	-	5.8	3.08e-05	0.145	GGAAGCCGGAAGTG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	63	76	+	5.8	3.08e-05	0.145	CAGAAGAGGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	77	90	-	5.8	3.08e-05	0.145	CAGAAGAGGAAGCA
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	77	90	-	5.8	3.08e-05	0.145	CAGAAGAGGAAGCA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	13	32	+	6.23853	3.08e-05	0.0486	CCGCCCCCGACCCGCCCCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	13	32	+	6.23853	3.08e-05	0.0486	CCGCCCCCGACCCGCCCCCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	100	109	-	12.4808	3.08e-05	0.085	CGCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	100	109	-	12.4808	3.08e-05	0.085	CGCGGAAGCA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	23	36	+	11.8654	3.08e-05	0.0155	TCTCCACCCACTTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	65	78	+	11.8654	3.08e-05	0.0155	CTGCTGCCCACTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	65	78	+	11.8654	3.08e-05	0.0155	CTGCTGCCCACTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	59	72	-	11.8654	3.08e-05	0.0155	CTTCCTCCCACAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	100	113	-	11.8654	3.08e-05	0.0155	GCCCAGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	100	113	-	11.8654	3.08e-05	0.0155	GCCCAGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	100	113	-	11.8654	3.08e-05	0.0155	GCCCAGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	100	113	-	11.8654	3.08e-05	0.0155	GCCCAGCCGCCGCC
SP1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	8	18	+	12.5	3.08e-05	0.01	ACCCCACCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	2	12	-	12.5	3.08e-05	0.01	ATCCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	2	12	-	12.5	3.08e-05	0.01	ATCCCACCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	8	18	-	12.5	3.08e-05	0.01	ATCCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	23	33	+	12.5	3.08e-05	0.01	CCCCCACCTCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	23	33	+	12.5	3.08e-05	0.01	CCCCCACCTCT
SP1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	15	25	-	12.5	3.08e-05	0.01	ACCCCACCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	37	47	-	12.5	3.08e-05	0.01	ACCCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	37	47	-	12.5	3.08e-05	0.01	ACCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	52	62	+	12.5	3.08e-05	0.01	CTCCCACCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	90	100	+	12.5	3.08e-05	0.01	ACCCCACCTCC
SP1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	97	107	-	12.5	3.08e-05	0.01	ACCCCACCTCC
RFX5	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	-	8.75862	3.08e-05	0.187	CGTTTCCAGGGCCACC
RFX5	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	+	8.75862	3.08e-05	0.187	CGTTTCCAGGGCCACC
ZEB1	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	56	64	-	13.1091	3.08e-05	0.319	TCACACCTG
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	28	44	+	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	28	44	+	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	28	44	+	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	28	44	+	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	28	44	-	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	28	44	-	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	28	44	-	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	28	44	-	11.4286	3.08e-05	0.338	GGTTGGTACAGAGGTGA
KLF14	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	19	32	-	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	49	62	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	49	62	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	49	62	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	49	62	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	77	90	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
KLF14	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	83	96	+	10.7759	3.08e-05	0.0264	CCCCCCGCCCCCCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	21	31	-	11.8545	3.08e-05	0.0135	GCGGAGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	90	100	-	11.8545	3.08e-05	0.0135	GCGGAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	90	100	-	11.8545	3.08e-05	0.0135	GCGGAGGCGCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	19	+	13.1224	3.08e-05	0.138	AGCAGCTGTCTAT
HINFP	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	5	16	-	12.1818	3.08e-05	0.109	CAGCGTCCTCCG
HINFP	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	20	31	+	12.1818	3.08e-05	0.109	CAGCGTCCTCCG
HINFP	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	84	95	-	12.1818	3.08e-05	0.109	CAGCGTCCTCCG
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	84	95	-	12.1818	3.08e-05	0.109	GCCCGTCCGCCG
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	84	95	-	12.1818	3.08e-05	0.109	GCCCGTCCGCCG
HINFP	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	99	110	+	12.1818	3.08e-05	0.109	CAGCGTCCTCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	44	58	+	11.1286	3.08e-05	0.108	CGAGGTCAGGAGGGA
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	13.0606	3.08e-05	1	GACATATGCC
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	30	40	-	12.9273	3.08e-05	0.146	ACGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	31	41	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	31	41	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	31	41	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	31	41	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	60	70	+	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	50	60	-	12.9273	3.08e-05	0.146	ACGTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	65	75	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	65	75	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	84	94	-	12.9273	3.08e-05	0.146	CTGTGACTCAG
NEUROG2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	12.5455	3.08e-05	1	GCCATATGCT
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	12.5455	3.08e-05	1	AGCATATGTT
NEUROG2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	12.5455	3.08e-05	1	AGCATATGTT
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	12.5455	3.08e-05	1	AGCATATGTT
NEUROG2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	12.5455	3.08e-05	1	GCCATATGCT
REST	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	13	33	-	7.23469	3.08e-05	0.208	GTGAGGACTTCGGCGCGCGCC
REST	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	82	102	+	7.23469	3.08e-05	0.208	GTGAGGACTTCGGCGCGCGCC
Foxd3	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	12	23	+	12.4565	3.09e-05	1	ATTTGTTTATTC
Foxd3	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	92	103	-	12.4565	3.09e-05	1	ATTTGTTTATTC
Hes1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	11	20	+	10.5035	3.09e-05	0.0789	GACACGCGAC
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	37	46	-	10.5035	3.09e-05	0.0789	GACACGCGAC
Hes1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	95	104	-	10.5035	3.09e-05	0.0789	GACACGCGAC
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	95	104	-	10.5035	3.09e-05	0.0789	GACACGCGAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	50	67	+	12.3455	3.09e-05	0.915	TTTATCAGAGGTTTCCAC
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	50	67	+	12.3455	3.09e-05	0.915	TTTATCAGAGGTTTCCAC
PLAG1	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	29	42	-	7.93878	3.09e-05	0.0647	GAGGCCCAGGCGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	73	86	+	7.93878	3.09e-05	0.0647	GAGGCCCAGGCGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	73	86	+	7.93878	3.09e-05	0.0647	GAGGCCCAGGCGGA
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	49	64	-	-5.26923	3.09e-05	0.317	CGGCCGCCCGCGCAGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	53	66	-	8.65957	3.09e-05	0.0959	GAACGCCCGCGGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	53	66	-	8.65957	3.09e-05	0.0959	GAACGCCCGCGGGG
ELF1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	6	17	+	11.2182	3.09e-05	0.0999	GAACAGGAAGTG
ELF1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	16	27	+	11.2182	3.09e-05	0.0999	GAACAGGAAGTG
ELF1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	57	-	11.2182	3.09e-05	0.0999	GAACAGGAAGTG
ELF1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	58	69	+	11.2182	3.09e-05	0.0999	GAACAGGAAGTG
ELF1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	99	-	11.2182	3.09e-05	0.0999	GAACAGGAAGTG
JUND	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	-	12.5532	3.09e-05	0.173	GATGACTCACT
JUND	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	+	12.5532	3.09e-05	0.173	GATGACTCACT
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	-	12.5	3.09e-05	0.0703	TCCCTGAGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	+	12.5	3.09e-05	0.0703	TCCCTGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	+	12.5	3.09e-05	0.0703	GGCCGGAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	+	12.5	3.09e-05	0.0703	GGCCGGAGGCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	12	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	12	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	12	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	12	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	12	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	14	24	-	11.9828	3.09e-05	0.0135	GTCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	14	24	-	11.9828	3.09e-05	0.0135	GTCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	26	36	+	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	57	+	11.9828	3.09e-05	0.0135	ACCCCTCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	50	60	-	11.9828	3.09e-05	0.0135	ACCCCTCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	103	113	-	11.9828	3.09e-05	0.0135	TCCCCCCCCCC
Rarb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	45	60	+	-0.793103	3.09e-05	0.851	CAGGGCCAAAGGTTGA
Rarb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	45	60	+	-0.793103	3.09e-05	0.851	CAGGGCCAAAGGTTGA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	89	104	-	-0.793103	3.09e-05	0.851	CAGGGCCAAAGGTTGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	11	28	+	-10.5263	3.09e-05	0.0337	GGTGAAAGGGAAGCAAAG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	87	104	-	-10.5263	3.09e-05	0.0337	GGTGAAAGGGAAGCAAAG
ELF5	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	36	46	+	12.2364	3.09e-05	0.12	ACCCGGATGTG
ELF5	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	79	-	12.2364	3.09e-05	0.12	ACCCGGATGTG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	4	24	-	11.1429	3.09e-05	0.0124	TGTGGTGAGGAGGGAGGGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	3	23	+	11.1429	3.09e-05	0.0124	GGGGGCGGGACGGCGAGGTGA
SMAD3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	14	23	-	11.0727	3.09e-05	1	TGTCTAGCCC
SMAD3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	14	23	-	11.0727	3.09e-05	1	TGTCTAGCCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	+	12.0328	3.09e-05	0.0579	CGCCCGGTGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	+	12.0328	3.09e-05	0.0579	CGCCCGGTGGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	85	+	12.0328	3.09e-05	0.0579	TGCCGGCGGGGGG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	+	12.0328	3.09e-05	0.0579	TCCCCTGACGGGA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	66	+	12.1184	3.09e-05	0.024	GCCCCTCCCATC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	66	+	12.1184	3.09e-05	0.024	GCCCCTCCCATC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	61	72	-	12.1184	3.09e-05	0.024	ACTCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	61	72	-	12.1184	3.09e-05	0.024	ACTCCGCCCCCC
Hnf4a	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	24	39	+	5.92727	3.09e-05	0.312	GTGGACAAAGTCCTAA
Hnf4a	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	76	91	-	5.92727	3.09e-05	0.312	GTGGACAAAGTCCTAA
Creb5	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	74	+	10.9455	3.09e-05	0.152	GCTTACGTCATG
Creb5	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	97	+	10.9455	3.09e-05	0.152	GCTTACGTCATG
Creb5	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	29	-	10.9455	3.09e-05	0.152	GCTTACGTCATG
Creb5	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	52	-	10.9455	3.09e-05	0.152	GCTTACGTCATG
ERG	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.5273	3.09e-05	0.102	TCCGGAAGCG
ERG	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.5273	3.09e-05	0.102	TCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.5273	3.09e-05	0.102	TCCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.5273	3.09e-05	0.102	TCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.5273	3.09e-05	0.102	AGCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.5273	3.09e-05	0.102	AGCGGAAGTG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	+	11.8966	3.09e-05	0.0554	GCCCCCGCGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	-	11.8966	3.09e-05	0.0554	GCCCCCGCGGGCC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	+	11.8966	3.09e-05	0.0554	GCCCCCGCGGGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	17	27	+	12.6897	3.09e-05	0.0451	AGGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	17	27	+	12.6897	3.09e-05	0.0451	AGGCGGGAGCT
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	80	90	-	12.8367	3.09e-05	0.263	GGTTCTCAGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	80	90	-	12.8367	3.09e-05	0.263	GGTTCTCAGAA
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	15	29	+	10.6066	3.09e-05	0.348	ATGAGTCATCTCATT
EGR3	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	15	29	+	8.81034	3.09e-05	0.0342	CGCCGCCGCCGCGTA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	17	31	+	8.81034	3.09e-05	0.0342	CGCCGCCTGCGCATG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	17	31	+	8.81034	3.09e-05	0.0342	CGCCGCCTGCGCATG
EGR3	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	41	55	+	8.81034	3.09e-05	0.0342	TCCCACCCCCGCTGC
EGR3	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	60	74	-	8.81034	3.09e-05	0.0342	TCCCACCCCCGCTGC
EGR3	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	86	100	-	8.81034	3.09e-05	0.0342	CGCCGCCGCCGCGTA
CEBPB	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	-	12.28	3.09e-05	0.744	GTTGCACAAT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	81	92	+	10.9836	3.09e-05	0.0881	GACCAGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	81	92	+	10.9836	3.09e-05	0.0881	GACCAGGAAGCG
ELF4	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	69	80	-	10.9836	3.09e-05	0.0881	GACCAGGAAGCG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	47	61	+	12	3.09e-05	0.149	GTAAGAGAAAGGGGA
MEOX2	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	53	62	-	10.5842	3.09e-05	1	GGTAATTATA
ID4	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	61	70	-	13.2131	3.09e-05	0.389	GACACCTGTA
ID4	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	84	93	+	13.2131	3.09e-05	0.389	GACACCTGCA
USF1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	11	21	-	12.4694	3.1e-05	0.13	GTCACGTGGCT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	14	24	-	12.4694	3.1e-05	0.13	AGCAGGTGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	14	24	-	12.4694	3.1e-05	0.13	AGCAGGTGACC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	61	71	-	12.4694	3.1e-05	0.13	GTCACGTGGCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	68	87	+	6.22018	3.1e-05	0.0488	CACCCCACCCCCAGACCTCA
Znf423	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	24	38	-	7.8764	3.1e-05	0.201	CGCCCCCTGGCGGGC
Znf423	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	77	91	+	7.8764	3.1e-05	0.201	CGCCCCCTGGCGGGC
Myog	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	69	+	13.1837	3.1e-05	0.124	GGCAGCTGTTG
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	65	75	-	13.1837	3.1e-05	0.124	GGCAGCTGTTG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	+	12.2857	3.1e-05	0.0857	AGCCTCCGGGGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	-	12.2857	3.1e-05	0.0857	AGCCTCCGGGGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	+	12.2857	3.1e-05	0.0857	AGCCTCCAGGCG
Sox3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	12	21	-	12.8103	3.1e-05	0.659	GCTTTGTCCT
REST	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	34	54	-	7.22449	3.1e-05	0.208	TCAAGCTCATTGGCCAGCAAC
REST	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	61	81	+	7.22449	3.1e-05	0.208	TCAAGCTCATTGGCCAGCAAC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	70	-	11.8361	3.1e-05	0.118	TGACCGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	70	-	11.8361	3.1e-05	0.118	TGACCGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	90	-	11.8361	3.1e-05	0.118	TGACCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	90	-	11.8361	3.1e-05	0.118	TGACCGGAAGTA
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	15	29	+	12	3.1e-05	0.0089	ACTCCTCCTCCTGCC
SP2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	31	+	12	3.1e-05	0.0089	CGCCCGCCCACGTAC
SP2	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	58	72	+	12	3.1e-05	0.0089	TCCCCGCCCCGGGTT
SP2	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	8	22	-	12	3.1e-05	0.0089	GACCCACCCCTTCCT
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	27	41	-	12	3.1e-05	0.0089	CCTCCTCCTCCCCTC
SP2	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	30	44	-	12	3.1e-05	0.0089	CGCCCGCCCACGTAC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	42	56	-	12	3.1e-05	0.0089	ATCCCTCCCCTTTCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	42	56	-	12	3.1e-05	0.0089	ATCCCTCCCCTTTCT
SP2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	84	98	-	12	3.1e-05	0.0089	CGCCCGCCCACGTAC
Klf12	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	27	41	-	10.3607	3.1e-05	0.0475	GACCCCACCCCCCCC
Klf12	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	74	88	+	10.3607	3.1e-05	0.0475	GACCCCACCCCCCCC
BATF3	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	86	99	+	3.9697	3.1e-05	0.139	CAATGAAGTCAGCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	16	29	-	3.9697	3.1e-05	0.139	CAATGAAGTCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	16	29	-	3.9697	3.1e-05	0.139	CAATGAAGTCAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	16	29	-	3.9697	3.1e-05	0.139	CAATGAAGTCAGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	14	25	-	12.4182	3.1e-05	0.0548	CCCCCGCGGCCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	26	-	12.4182	3.1e-05	0.0548	CCCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	-	12.4182	3.1e-05	0.0548	TGCCTCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	-	12.4182	3.1e-05	0.0548	TGCCTCCGGCCG
GSX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	9.92453	3.1e-05	1	ACTAATTAGA
Esrra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	10	20	-	9.83636	3.1e-05	0.862	TCCAAGGTCGC
Esrra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	10	20	-	9.83636	3.1e-05	0.862	TCCAAGGTCGC
Esrra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	22	32	-	9.83636	3.1e-05	0.862	TCCAAGGTCGC
Esrra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	42	52	-	9.83636	3.1e-05	0.862	TCCAAGGTCGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	76	89	-	7.92857	3.1e-05	0.0647	GGGGCTCTCCGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	76	89	-	7.92857	3.1e-05	0.0647	GGGGCTCTCCGGGA
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	4	16	-	12.6735	3.1e-05	0.367	TGGAGGTCAAAAG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	20	32	+	12.6735	3.1e-05	0.367	GTGAGGTCATCGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	20	32	+	12.6735	3.1e-05	0.367	GTGAGGTCATCGG
NR2F1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	83	95	-	12.6735	3.1e-05	0.367	GTGAGGTCATCGG
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	11	20	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	36	45	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	53	62	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	53	62	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	53	62	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	73	82	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	73	82	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	99	108	+	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	7	16	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	25	34	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	27	36	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	27	36	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	33	42	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	33	42	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	34	43	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	34	43	-	11.9541	3.1e-05	0.047	CCCCCCCACC
ZNF740	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	70	79	-	11.9541	3.1e-05	0.047	CCCCCCCACC
Klf1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	8	18	-	12.4091	3.1e-05	0.0428	GAACCCACCCT
LBX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	10.8983	3.1e-05	1	TCCAATTAAC
LBX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	10.8983	3.1e-05	1	TCCAATTAAC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	30	45	+	11.6727	3.1e-05	0.0374	CCCTGCCCACCCCCAC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	32	47	-	11.6727	3.1e-05	0.0374	CCCTGCCCACCCCCAC
EGR4	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	65	80	-	11.6727	3.1e-05	0.0374	CTCCTCCCACCCGACC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	99	114	-	11.6727	3.1e-05	0.0374	GCACGCCCAGGCAGCG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	11.7069	3.1e-05	0.215	GCCACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	11.7069	3.1e-05	0.215	GCCACGTGAT
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	27	36	+	11.7069	3.1e-05	0.215	AACACCTGAC
Srebf1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	11.7069	3.1e-05	0.215	GCCACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	79	88	-	11.7069	3.1e-05	0.215	AACACCTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	79	88	-	11.7069	3.1e-05	0.215	AACACCTGAC
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	26	40	+	11.1143	3.1e-05	0.108	CAGGGGGAGGGGCCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	26	40	+	11.1143	3.1e-05	0.108	CAGGGGGAGGGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	26	40	+	11.1143	3.1e-05	0.108	CAGGGGGAGGGGCCG
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	85	97	-	11.5738	3.1e-05	0.506	TGGTGACGAAATA
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	85	97	-	11.5738	3.1e-05	0.506	TGGTGACGAAATA
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	85	97	-	11.5738	3.1e-05	0.506	TGGTGACGAAATA
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	85	97	-	11.5738	3.1e-05	0.506	TGGTGACGAAATA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	11	28	+	-10.5395	3.1e-05	0.0337	AGAGGGAGGGAGGCAGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	8	25	-	-10.5395	3.1e-05	0.0337	GAAGGAGCGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	22	39	-	-10.5395	3.1e-05	0.0337	GGAAACCGGCAAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	22	39	-	-10.5395	3.1e-05	0.0337	GGAAACCGGCAAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	22	39	-	-10.5395	3.1e-05	0.0337	GGAAACCGGCAAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	22	39	-	-10.5395	3.1e-05	0.0337	GGAAACCGGCAAGGCAGG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	-	13.1923	3.1e-05	0.245	CGCACGTGAG
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	-	13.1923	3.1e-05	0.245	CGCACGTGAG
BHLHE40	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	+	13.1923	3.1e-05	0.245	CGCACGTGAG
BHLHE40	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	-	13.1923	3.1e-05	0.245	CGCACGTGAG
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	-	13.1923	3.1e-05	0.245	CGCACGTGAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	8	21	-	12.7308	3.1e-05	0.183	GGAGCGTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	8	21	-	12.7308	3.1e-05	0.183	GGAGCGTGAGTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	22	35	+	12.7308	3.1e-05	0.183	GGAGCGTGAGTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	20	33	-	12.7308	3.1e-05	0.183	GGAATCTGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	90	103	+	12.7308	3.1e-05	0.183	CACAGGTGAGTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	90	103	+	12.7308	3.1e-05	0.183	CACAGGTGAGTCAG
Vdr	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	68	83	-	6.67213	3.1e-05	0.822	GGGGACATGGGGTGCG
THAP1	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	4	12	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	11	19	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	11	19	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	11	19	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	11	19	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	12	20	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	12	20	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	22	30	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	22	30	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	31	39	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	31	39	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	33	41	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	33	41	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	33	41	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	33	41	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	33	41	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	35	43	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	51	59	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	72	80	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	72	80	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	72	80	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	72	80	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	74	82	+	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	90	98	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	104	112	-	10.6184	3.11e-05	0.192	CTGCCAGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	104	112	-	10.6184	3.11e-05	0.192	CTGCCAGCA
IRF1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	3	23	+	10.8226	3.11e-05	0.157	TCCGGCTTTCAGTTTGGCTGG
IRF1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	92	112	-	10.8226	3.11e-05	0.157	TCCGGCTTTCAGTTTGGCTGG
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	46	62	+	6.58182	3.11e-05	0.0206	GAGGCCCCTCCTCTATC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	58	74	+	6.58182	3.11e-05	0.0206	CTGGCTCCGGCCCCACC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	72	88	+	6.58182	3.11e-05	0.0206	GAGGCCCCTCCTCTATC
SP4	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	85	101	+	6.58182	3.11e-05	0.0206	AACGCTCCTCCCCCTCC
SP4	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	98	114	+	6.58182	3.11e-05	0.0206	CTGGCTCCGGCCCCACC
SP4	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	1	17	-	6.58182	3.11e-05	0.0206	CTGGCTCCGGCCCCACC
SP4	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	14	30	-	6.58182	3.11e-05	0.0206	AACGCTCCTCCCCCTCC
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	27	43	-	6.58182	3.11e-05	0.0206	GAGGCCCCTCCTCTATC
SP4	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	41	57	-	6.58182	3.11e-05	0.0206	CTGGCTCCGGCCCCACC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	53	69	-	6.58182	3.11e-05	0.0206	GAGGCCCCTCCTCTATC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	55	71	-	6.58182	3.11e-05	0.0206	GAGGCTGCGCCCACCCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	55	71	-	6.58182	3.11e-05	0.0206	GAGGCTGCGCCCACCCA
CREB3	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	2	15	-	11.4429	3.11e-05	0.214	CTGTGACGTCATAA
CREB3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	65	78	-	11.4429	3.11e-05	0.214	CTGTGACGTCATAA
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	37	50	+	11.4429	3.11e-05	0.214	CTGTGACGTCATAA
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	37	50	+	11.4429	3.11e-05	0.214	CTGTGACGTCATAA
CREB3	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	100	113	+	11.4429	3.11e-05	0.214	CTGTGACGTCATAA
TP63	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	+	1.7069	3.11e-05	0.655	GTCATGCTCGCACATGTG
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	27	38	+	11.0806	3.11e-05	1	CAAGATCAAAAC
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	92	103	+	11.0806	3.11e-05	1	CAAGATCAAAAC
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	3	17	-	12.4043	3.11e-05	0.311	GGCTGTGACGTCATA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	35	49	+	12.4043	3.11e-05	0.311	GGCTGTGACGTCATA
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	35	49	+	12.4043	3.11e-05	0.311	GGCTGTGACGTCATA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	32	46	-	12.4043	3.11e-05	0.311	AGCCATGACATCATC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	66	80	-	12.4043	3.11e-05	0.311	GGCTGTGACGTCATA
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	98	112	+	12.4043	3.11e-05	0.311	GGCTGTGACGTCATA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	22	35	-	11.8462	3.11e-05	0.0156	TCACCGCCCACGTG
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	48	61	+	11.8462	3.11e-05	0.0156	CTTCTACCCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	60	73	-	11.8462	3.11e-05	0.0156	TCCCTGCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	85	98	+	11.8462	3.11e-05	0.0156	CTTTCGCCTCCGCC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	28	42	-	9.53947	3.11e-05	0.199	GAGCTGAGTCACCAT
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	54	64	-	12.0727	3.11e-05	1	CAGGTGTCAAT
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	54	64	-	12.0727	3.11e-05	1	CAGGTGTCAAT
TBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	54	64	-	12.0727	3.11e-05	1	CAGGTGTCAAT
IRF7	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	34	47	-	10.5968	3.11e-05	0.651	ATTAAAGTGAAAGC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	-	12.5	3.11e-05	0.127	ATCACATGAT
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	+	12.5	3.11e-05	0.127	ATCACATGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	+	12.5	3.11e-05	0.127	ATCACATGAT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	18	27	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	24	33	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	26	35	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	18	27	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	28	37	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	33	42	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	24	33	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	33	42	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	33	42	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	33	42	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	35	44	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	35	44	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	35	44	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	35	44	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	35	44	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	26	35	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	37	46	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	37	46	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	28	37	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	37	46	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	37	46	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	33	42	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	33	42	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	33	42	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	33	42	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	35	44	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	44	53	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	35	44	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	35	44	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	35	44	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	35	44	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	37	46	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	37	46	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	37	46	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	37	46	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	48	57	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	44	53	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	54	63	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	48	57	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	58	67	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	62	71	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	54	63	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	66	75	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	58	67	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	62	71	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	71	80	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	66	75	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	71	80	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	83	92	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	83	92	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	85	94	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	85	94	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	87	96	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	87	96	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	83	92	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	83	92	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	93	102	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	93	102	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	85	94	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	85	94	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	95	104	+	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	87	96	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	87	96	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	93	102	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	93	102	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	95	104	-	10.1452	3.11e-05	0.043	CGCGCGCGCG
Arntl	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	4	13	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	32	+	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	35	44	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	35	44	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	55	64	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	55	64	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	68	77	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	68	77	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	83	92	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	88	97	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	88	97	-	12.541	3.11e-05	0.183	GGGCACGTGA
Arntl	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	111	+	12.541	3.11e-05	0.183	GGGCACGTGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	+	12	3.11e-05	0.064	TCCCCCAGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	+	12	3.11e-05	0.064	TCCCCCAGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	+	12	3.11e-05	0.064	TCCCCCAGAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	+	12	3.11e-05	0.064	TCCCCCAGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	+	12	3.11e-05	0.064	GGCCCTGCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	+	12	3.11e-05	0.064	GGCCCTGCCGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	+	12	3.11e-05	0.064	GGCCCTGCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	+	12	3.11e-05	0.064	GGCCCTGCCGGCA
RUNX2	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	22	30	+	12.7885	3.11e-05	0.442	AGACCGCAA
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	94	102	+	12.7885	3.11e-05	0.442	AGACCGCAA
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	94	102	+	12.7885	3.11e-05	0.442	AGACCGCAA
RUNX2	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	85	93	-	12.7885	3.11e-05	0.442	AGACCGCAA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	18	27	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	29	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	29	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	29	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	29	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	27	-	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	27	36	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	27	36	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	27	36	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	27	36	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	41	-	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	50	59	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	50	59	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	74	83	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	88	-	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	88	97	+	12.4255	3.11e-05	0.0896	AGCGGAAGTG
FLI1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.4255	3.11e-05	0.0896	GCCGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	95	-	12.4255	3.11e-05	0.0896	AGCGGAAGTG
NFKB1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	91	103	-	5.12245	3.11e-05	0.233	CTGGGGTTCCCCG
NFKB1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	12	24	+	5.12245	3.11e-05	0.233	CTGGGGTTCCCCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	8	27	-	6.20183	3.11e-05	0.049	CCATCCCCCACCCCTTCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	32	42	-	11.9655	3.11e-05	0.0136	GACCCGCCCTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	69	79	-	11.9655	3.11e-05	0.0136	GACCCGCCCTC
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	30	41	+	10.0367	3.11e-05	0.848	TGAGAGCTGACA
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	30	41	+	10.0367	3.11e-05	0.848	TGAGAGCTGACA
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	21	32	+	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	21	32	+	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	21	32	+	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	83	94	+	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	21	32	-	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	21	32	-	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	21	32	-	10.9273	3.11e-05	0.152	GCTGACGTCAGC
Creb5	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	83	94	-	10.9273	3.11e-05	0.152	GCTGACGTCAGC
ELK4	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	45	55	-	12.6	3.12e-05	0.0495	CGTCTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	60	70	+	12.6	3.12e-05	0.0495	CGTCTTCCGGC
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	60	73	-	12.6724	3.12e-05	0.213	GTTCTGGGAAGCTT
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	60	73	-	12.6724	3.12e-05	0.213	GTTCTGGGAAGCTT
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	60	73	-	12.6724	3.12e-05	0.213	GTTCTGGGAAGCTT
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	60	73	-	12.6724	3.12e-05	0.213	GTTCTGGGAAGCTT
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	73	86	+	12.6724	3.12e-05	0.213	TTTCCAGGAATGCT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	73	86	+	12.6724	3.12e-05	0.213	TTTCCAGGAATGCT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	73	86	+	12.6724	3.12e-05	0.213	TTTCCAGGAATGCT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	73	86	+	12.6724	3.12e-05	0.213	TTTCCAGGAATGCT
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	4	22	+	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	4	22	+	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
PAX5	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	38	56	+	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	59	77	-	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	59	77	-	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
PAX5	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	93	111	-	11.8871	3.12e-05	0.137	GGATTCAGCGGAGCGCGGT
STAT1::STAT2	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	23	37	-	11.3333	3.12e-05	0.276	CTACTTCCGGTTTCC
STAT1::STAT2	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	78	92	+	11.3333	3.12e-05	0.276	CTACTTCCGGTTTCC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	+	12.3636	3.12e-05	0.0893	CGCCCCGCGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	+	12.3636	3.12e-05	0.0893	AGCCGCGGGGCA
TFAP2B	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	+	12.3636	3.12e-05	0.0893	CGCCCCGCGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	-	12.3636	3.12e-05	0.0893	CGCCCCGCGGCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	-	12.3636	3.12e-05	0.0893	AGCCGCGGGGCA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	-	12.3636	3.12e-05	0.0893	CGCCCCGCGGCG
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	38	49	-	12.2097	3.12e-05	0.281	GAGACCCCCGCA
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	54	65	-	6.05172	3.12e-05	0.189	CGGCGCGTGGCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	77	-	6.05172	3.12e-05	0.189	GGGCACGTGACC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	77	-	6.05172	3.12e-05	0.189	GGGCACGTGACC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	97	-	6.05172	3.12e-05	0.189	GGGCACGTGACC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	97	-	6.05172	3.12e-05	0.189	GGGCACGTGACC
NRF1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	36	46	+	11.8364	3.12e-05	0.0136	CAGCCTGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	52	62	+	11.8364	3.12e-05	0.0136	CAGCCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	27	37	-	11.8364	3.12e-05	0.0136	GCGCCTGCGAC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	27	37	-	11.8364	3.12e-05	0.0136	GCGCCTGCGAC
NRF1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	53	63	-	11.8364	3.12e-05	0.0136	CAGCCTGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	81	91	-	11.8364	3.12e-05	0.0136	CAGCCTGCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	31	45	+	10.3443	3.12e-05	0.0475	GGCCCCGCCCCGGAG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	31	45	+	10.3443	3.12e-05	0.0475	GGCCCCGCCCCGGAG
Klf12	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	30	44	-	10.3443	3.12e-05	0.0475	GGCCCCGCCCCGGAG
Klf12	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	71	85	+	10.3443	3.12e-05	0.0475	GGCCCCGCCCCGGAG
Klf12	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	70	84	-	10.3443	3.12e-05	0.0475	GGCCCCGCCCCGGAG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	13	23	-	12.3103	3.12e-05	0.215	TCCTGTGGGTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	13	23	-	12.3103	3.12e-05	0.215	TCCTGTGGGTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	90	100	+	12.3103	3.12e-05	0.215	TCCTGTGGGTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	90	100	+	12.3103	3.12e-05	0.215	TCCTGTGGGTT
SRY	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	106	114	+	11.3222	3.12e-05	1	CTAAACAAT
SRY	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	106	114	+	11.3222	3.12e-05	1	CTAAACAAT
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	104	114	+	9.8	3.12e-05	0.862	TTGAAGGTCGC
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	1	15	+	0.745455	3.12e-05	0.506	AACCAAACCTAAAGC
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	1	15	+	0.745455	3.12e-05	0.506	AACCAAACCTAAAGC
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	46	60	+	0.745455	3.12e-05	0.506	AACCAAACCTAAAGC
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	46	60	+	0.745455	3.12e-05	0.506	AACCAAACCTAAAGC
PLAG1	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	18	31	-	7.90816	3.12e-05	0.0647	GAGGCCGAGGCGGG
PLAG1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	85	98	+	7.90816	3.12e-05	0.0647	GAGGCCGAGGCGGG
PLAG1	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	85	98	+	7.90816	3.12e-05	0.0647	GAGGCCGAGGCGGG
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	21	+	-1.87143	3.12e-05	0.662	AGGGGTGAGAGGTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	21	+	-1.87143	3.12e-05	0.662	AGGGGTGAGAGGTCA
JUN	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	19	31	+	12.3265	3.12e-05	0.301	CAGGTGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	25	37	+	12.3265	3.12e-05	0.301	CAGATGACGTCAG
JUN	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	26	38	+	12.3265	3.12e-05	0.301	GTCGTGACGTCAT
JUN	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	26	38	-	12.3265	3.12e-05	0.301	CAGATGACGTCAG
JUN	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	30	42	-	12.3265	3.12e-05	0.301	CAGATGACGTCAG
JUN	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	77	89	-	12.3265	3.12e-05	0.301	GTCGTGACGTCAT
JUN	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	78	90	-	12.3265	3.12e-05	0.301	CAGATGACGTCAG
JUN	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	84	96	-	12.3265	3.12e-05	0.301	CAGGTGACGTCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	2	12	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	2	12	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	2	12	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	9	19	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	11	21	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	21	31	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	25	35	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	25	35	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	33	43	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	43	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	43	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	43	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	43	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	41	51	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	44	54	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	47	57	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	65	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	55	65	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	55	65	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	65	+	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	56	66	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	56	66	+	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	24	34	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	24	34	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	34	44	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	34	44	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	58	68	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	61	71	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	64	74	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	72	82	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	73	83	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	73	83	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	73	83	-	12.1463	3.12e-05	0.0165	GCCCCTCCCCT
SP3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	96	106	-	12.1463	3.12e-05	0.0165	GCCCCCCCCCC
HESX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	+	11.9455	3.12e-05	1	GTTAATTGGA
HESX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	+	11.9455	3.12e-05	1	GTTAATTGGA
HESX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	-	11.9455	3.12e-05	1	GGTAATTGGC
HESX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	-	11.9455	3.12e-05	1	GGTAATTGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	25	35	+	12.8276	3.12e-05	0.0465	CGGCGGGAAAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	24	-	6.56364	3.12e-05	0.0206	GTCACCCCCCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	24	-	6.56364	3.12e-05	0.0206	GTCACCCCCCCCCCCCC
CTCF	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	55	73	+	10.4426	3.12e-05	0.0988	TGGCCGGGAGCGGGCGCGG
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	28	39	-	12.4719	3.12e-05	1	TCAACATCTGGA
GLIS3	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	76	89	+	6.42424	3.12e-05	0.379	TGCCCTCCGCGACG
GLIS3	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	26	39	-	6.42424	3.12e-05	0.379	TGCCCTCCGCGACG
ZNF143	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	50	65	+	4.56897	3.12e-05	0.299	AGCCCACGGTGCAGCG
ZNF143	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	50	65	-	4.56897	3.12e-05	0.299	AGCCCACGGTGCAGCG
NFYB	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	5	19	-	12.3077	3.12e-05	0.11	ACTGCAGCCAATAAG
NFYB	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	20	34	+	12.3077	3.12e-05	0.11	CTAAGAGCCAATCAA
NFYB	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	81	95	-	12.3077	3.12e-05	0.11	CTAAGAGCCAATCAA
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	99	113	-	12.3077	3.12e-05	0.11	GCTTTGCCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	99	113	-	12.3077	3.12e-05	0.11	GCTTTGCCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	99	113	-	12.3077	3.12e-05	0.11	GCTTTGCCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	99	113	-	12.3077	3.12e-05	0.11	GCTTTGCCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	99	113	-	12.3077	3.12e-05	0.11	GCTTTGCCCAATCAG
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	51	64	+	9.55714	3.12e-05	0.145	GCGTGACGTCAGGA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	51	64	+	9.55714	3.12e-05	0.145	GCGTGACGTCAGGA
ATF7	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	51	64	-	9.55714	3.12e-05	0.145	GCGTGACGTCAGGA
PPARG	WILDTYPE__mrna.noflip.NA__chr10:26727261..26727375,+__975.1.0.0	29	48	+	9.1	3.12e-05	1	CTAGGCCCCAATCCCTTAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	56	76	-	11.1224	3.12e-05	0.0125	AGATGAGGGAAGCAGGAGAGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	56	76	-	11.1224	3.12e-05	0.0125	AGATGAGGGAAGCAGGAGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	18	38	+	11.1224	3.12e-05	0.0125	AGGTGAAGGGGCGGAGAGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	28	48	+	11.1224	3.12e-05	0.0125	CGAGGAGCCAGGGGCGGGGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	28	48	+	11.1224	3.12e-05	0.0125	CGAGGAGCCAGGGGCGGGGCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	35	46	+	12.1667	3.12e-05	0.109	TCCCGTCCGCAG
Tcf12	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	39	+	13.1224	3.12e-05	0.154	AACAGCTGTGC
Tcf12	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	47	57	+	13.1224	3.12e-05	0.154	GGCAGCTGAGG
Tcf12	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	58	68	-	13.1224	3.12e-05	0.154	GGCAGCTGAGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	76	86	-	13.1224	3.12e-05	0.154	GGCAGCTGAGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	76	86	-	13.1224	3.12e-05	0.154	GGCAGCTGAGG
KLF14	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	6	19	-	10.7414	3.12e-05	0.0266	AGCCCCGCCCCGCT
KLF14	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	29	42	+	10.7414	3.12e-05	0.0266	AGCCCCGCCCCGCT
KLF14	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	55	68	+	10.7414	3.12e-05	0.0266	AGCCCCGCCCCGCT
KLF14	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	47	60	-	10.7414	3.12e-05	0.0266	AGCCCCGCCCCGCT
KLF14	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	73	86	-	10.7414	3.12e-05	0.0266	AGCCCCGCCCCGCT
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	25	40	+	-5.32692	3.13e-05	0.317	GGAGGCCCCACGGTGC
GLIS1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	75	90	-	-5.32692	3.13e-05	0.317	GGAGGCCCCACGGTGC
NR2C2	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	16	30	+	11.1	3.13e-05	0.108	CAGGGGCGGGGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	85	99	-	11.1	3.13e-05	0.108	CAGGGGCGGGGGCCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	85	99	-	11.1	3.13e-05	0.108	CAGGGGCGGGGGCCG
SP2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	59	73	+	11.9828	3.13e-05	0.00896	CCTCCTCCCTCCCCG
SP2	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	91	105	+	11.9828	3.13e-05	0.00896	ACACCGCCCCTCCCT
SP2	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	10	24	-	11.9828	3.13e-05	0.00896	ACACCGCCCCTCCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	22	36	-	11.9828	3.13e-05	0.00896	GCCCCACCCTTCGGA
SP2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	24	38	-	11.9828	3.13e-05	0.00896	CCTCCTCCCCTCACC
SP2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	42	56	-	11.9828	3.13e-05	0.00896	CCTCCTCCCTCCCCG
SP2	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	47	61	-	11.9828	3.13e-05	0.00896	GGCCCACCTTCCTGC
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	23	-	12.2	3.13e-05	0.12	ACCCGGAAACG
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	34	-	12.2	3.13e-05	0.12	ACCCGGAAACG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	81	91	+	12.2	3.13e-05	0.12	ACCCGGAAACG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	81	91	+	12.2	3.13e-05	0.12	ACCCGGAAACG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	12.4182	3.13e-05	0.0911	ACCGGAACTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	12.4182	3.13e-05	0.0911	ACCGGAACTG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	+	9.28571	3.13e-05	0.119	TGTTACGTCACA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	30	41	+	12.1053	3.13e-05	0.0242	CCCCCGCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	30	41	+	12.1053	3.13e-05	0.0242	CCCCCGCCCGCT
SP8	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	65	76	-	12.1053	3.13e-05	0.0242	ACCCCGCCCCAC
Hes1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	49	58	+	10.4965	3.13e-05	0.0791	CCCACGCGCG
Hes1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	58	67	-	10.4965	3.13e-05	0.0791	CCCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	97	106	-	10.4965	3.13e-05	0.0791	CCCACGCGCG
RELA	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	84	93	+	12.2245	3.13e-05	0.201	CGGGTTTTCC
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	46	63	+	-5.66667	3.13e-05	1	AGGGCCAAAGGTTGAAGC
RARA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	46	63	+	-5.66667	3.13e-05	1	AGGGCCAAAGGTTGAAGC
RARA	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	86	103	-	-5.66667	3.13e-05	1	AGGGCCAAAGGTTGAAGC
Bcl6	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	86	99	+	12.1129	3.13e-05	0.375	GTTTCTGGAAAGAT
ELK4	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	57	67	+	12.5636	3.13e-05	0.0497	ACACTTCCGCC
Ascl2	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	51	+	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	42	51	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	73	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	73	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	73	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	73	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	86	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	86	-	12.4429	3.13e-05	0.174	AGCAGCTGGC
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	112	+	12.4429	3.13e-05	0.174	AGCAGCTGGC
EGR4	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	15	30	+	11.6545	3.13e-05	0.0374	GCCCGCCCCCCCCGAC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	9	24	-	11.6545	3.13e-05	0.0374	CCGCGCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	9	24	-	11.6545	3.13e-05	0.0374	CCGCGCCCCCGCCCCC
EGR4	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	85	100	-	11.6545	3.13e-05	0.0374	GCCCGCCCCCCCCGAC
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	86	100	-	11.982	3.13e-05	0.149	CTAGTGCAGAGGGCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	71	84	-	7.89796	3.13e-05	0.0647	GGGGCGCTAGGGCA
TEAD4	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	15	24	+	11.8387	3.14e-05	0.719	CAAATTCCAC
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	70	79	-	11.8387	3.14e-05	0.719	CAAATTCCAC
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	80	89	+	11.8387	3.14e-05	0.719	CAAATTCCAC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	66	80	+	11.8846	3.14e-05	0.793	CCCGCCTCGCGCGTC
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	66	80	+	11.8846	3.14e-05	0.793	CCCGCCTCGCGCGTC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	66	80	+	11.8846	3.14e-05	0.793	CCCGCCTCGCGCGTC
CENPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	66	80	+	11.8846	3.14e-05	0.793	CCCGCCTCGCGCGTC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	66	80	+	11.8846	3.14e-05	0.793	CCCGCCTCGCGCGTC
Rarb(var.2)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	32	48	-	0.80303	3.14e-05	0.785	AGGCCAGGGCGTGGTCA
Rarb(var.2)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	67	83	+	0.80303	3.14e-05	0.785	AGGCCAGGGCGTGGTCA
Vdr	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	70	85	-	6.63934	3.14e-05	0.822	CGGGACACAGGGGTCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	70	85	-	6.63934	3.14e-05	0.822	CGGGACACAGGGGTCA
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	72	90	-	11.9194	3.14e-05	0.671	TGCCCAAATGTGGCCTGTC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	72	90	-	11.9194	3.14e-05	0.671	TGCCCAAATGTGGCCTGTC
HSF4	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	81	93	+	12.0854	3.14e-05	1	TTCCAGAATTGTC
SP4	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	43	59	+	6.54545	3.14e-05	0.0207	CAGGCCCAGCCCACGGT
SP4	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	56	72	-	6.54545	3.14e-05	0.0207	CAGGCCCAGCCCACGGT
SP4	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	63	79	-	6.54545	3.14e-05	0.0207	GCTACCCCGCCCCACCC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	42	55	+	12.3939	3.14e-05	0.0426	TTCACCCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	42	55	+	12.3939	3.14e-05	0.0426	TTCACCCCGGCCTC
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	12.803	3.14e-05	0.247	GCCACGTGAC
MNT	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	12.803	3.14e-05	0.247	GCCACGTGAC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	+	12.5106	3.14e-05	0.174	GGTGAGTCACA
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	-	12.5106	3.14e-05	0.174	GGTGAGTCACA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	7	21	-	10.3279	3.14e-05	0.0477	TGCCCCGCCCCTGCT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	78	92	+	10.3279	3.14e-05	0.0477	TGCCCCGCCCCTGCT
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	+	12.1034	3.14e-05	0.16	GCCGCGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	-	12.1034	3.14e-05	0.16	GCCGCGTGCC
ELF4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	28	39	+	10.9508	3.14e-05	0.0891	GTGCCGGAAGTC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	10	20	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	35	+	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	35	+	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	24	34	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	29	39	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	29	39	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	30	40	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	30	40	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	39	49	-	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	76	+	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	105	+	11.9483	3.14e-05	0.0136	CCCCCTCCCCT
STAT3	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	10	20	-	12.4898	3.14e-05	0.201	TTGCCAGGAAG
STAT3	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	23	33	+	12.4898	3.14e-05	0.201	ATGCCGGGAAG
STAT3	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	68	78	-	12.4898	3.14e-05	0.201	CTTCTGAGAAG
STAT3	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	82	92	-	12.4898	3.14e-05	0.201	ATGCCGGGAAG
Klf4	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	2	11	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	4	13	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	15	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	25	34	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	25	34	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	16	25	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	27	36	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	33	42	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	42	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	42	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	44	53	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	45	54	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	61	70	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	61	70	+	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	61	70	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	62	71	-	12.2755	3.14e-05	0.0154	AGGGCGTGGA
Klf4	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	62	71	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	73	82	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	84	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	84	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	84	-	12.2755	3.14e-05	0.0154	GGGGTGGGGA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	37	48	+	12.1515	3.14e-05	0.109	CGGCGTCCGGGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	37	48	+	12.1515	3.14e-05	0.109	CGGCGTCCGGGT
NFKB1	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	25	37	-	5.08163	3.14e-05	0.233	CGGGGCTCTCCCT
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	38	50	+	5.08163	3.14e-05	0.233	AGGGGAAATCCCA
EGR1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	4	17	+	11.8269	3.14e-05	0.0156	GTTCCTCTCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	20	33	+	11.8269	3.14e-05	0.0156	TTCCTGCCCACGCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	20	33	+	11.8269	3.14e-05	0.0156	TTCCTGCCCACGCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	20	33	+	11.8269	3.14e-05	0.0156	TTCCTGCCCACGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	20	33	+	11.8269	3.14e-05	0.0156	TTCCTGCCCACGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	22	35	-	11.8269	3.14e-05	0.0156	GCCACGCCCCTGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	22	35	-	11.8269	3.14e-05	0.0156	GCCACGCCCCTGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	60	73	+	11.8269	3.14e-05	0.0156	TTCCCACCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	60	73	+	11.8269	3.14e-05	0.0156	TTCCCACCCCCAGG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	95	+	11.8269	3.14e-05	0.0156	GCTCCTCCCCCTTT
EGR1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	82	95	-	11.8269	3.14e-05	0.0156	TTCCTGCCCACGCA
EGR1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	98	111	-	11.8269	3.14e-05	0.0156	GTTCCTCTCCCGCC
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	27	39	+	11.5574	3.14e-05	0.506	TGATGACGTAAGC
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	27	39	+	11.5574	3.14e-05	0.506	TGATGACGTAAGC
ATF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	27	39	+	11.5574	3.14e-05	0.506	TGATGACGTAAGC
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	27	39	+	11.5574	3.14e-05	0.506	TGATGACGTAAGC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	5	17	-	10.4545	3.14e-05	0.231	TGGGGGACACCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	5	17	-	10.4545	3.14e-05	0.231	TGGGGGACACCCT
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	-	12.4	3.14e-05	0.0548	CGCCCAAGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	+	12.4	3.14e-05	0.0548	CGCCCAAGGGCG
KLF14	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	24	37	+	10.7241	3.14e-05	0.0266	GGCCCCGCCCCAAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	12	25	-	10.7241	3.14e-05	0.0266	CGTCACCCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	12	25	-	10.7241	3.14e-05	0.0266	CGTCACCCCCCCCC
KLF14	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	34	47	-	10.7241	3.14e-05	0.0266	GCCTACGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	68	81	+	10.7241	3.14e-05	0.0266	GCCTACGCCCCCAG
KLF14	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	78	91	-	10.7241	3.14e-05	0.0266	GGCCCCGCCCCAAC
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	23	37	-	11.0857	3.15e-05	0.108	GGGGGTGGGAGGGAA
REST	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	81	101	-	7.18367	3.15e-05	0.208	GCCATCACCCAGGTCAGCAAG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	59	73	-	11.8364	3.15e-05	0.302	AGAAGGGGAAAGCCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	13	31	+	11.871	3.15e-05	0.137	GGAGCCAGTGAGCCGTGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	48	65	+	-10.5789	3.15e-05	0.034	GGGAGGAGGCGGTGAAGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	79	96	+	-10.5789	3.15e-05	0.034	GGCGGGGAGGGGGGAGGG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	19	36	-	-10.5789	3.15e-05	0.034	GGCGGGGAGGGGGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	50	67	-	-10.5789	3.15e-05	0.034	GGGAGGAGGCGGTGAAGG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.4231	3.15e-05	0.0992	GCCGGAAGCG
Crem	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	10	19	+	12.8197	3.15e-05	0.243	GATGACGTCT
Crem	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	23	32	+	12.8197	3.15e-05	0.243	GATGACGTCT
Crem	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	83	92	-	12.8197	3.15e-05	0.243	GATGACGTCT
Rarg(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	24	40	+	-2.10909	3.15e-05	1	GATGTCCATCAGGGTCA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	24	40	+	-2.10909	3.15e-05	1	GATGTCCATCAGGGTCA
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	17	27	+	12.6182	3.15e-05	0.0506	TCCCTGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	35	45	+	12.6182	3.15e-05	0.0506	AGCCTGGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	35	45	+	12.6182	3.15e-05	0.0506	AGCCTGGGGCT
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	98	-	12.6182	3.15e-05	0.0506	TCCCTGAGGCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	97	107	-	12.6182	3.15e-05	0.0506	AGCCTGGGGCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	56	75	+	6.16514	3.15e-05	0.0491	CCCCACCCCACCCCGCTGCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	56	75	+	6.16514	3.15e-05	0.0491	CCCCACCCCACCCCGCTGCT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	56	75	+	6.16514	3.15e-05	0.0491	CCCCACCCCACCCCGCTGCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	76	95	+	6.16514	3.15e-05	0.0491	CCCCAGACCTCACCCTGCCC
PLAG1	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	85	98	+	7.88776	3.15e-05	0.0647	GAGGCCGAGGTGGG
PLAG1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	85	98	+	7.88776	3.15e-05	0.0647	GAGGCCGAGGTGGG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	8	17	+	11.945	3.15e-05	0.047	TCCCCCCCCT
GLIS1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	81	96	-	-5.36538	3.15e-05	0.317	AGACCGGCAGCGACGC
Sox6	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	47	56	+	13.2143	3.15e-05	0.754	GCATTGTCTC
Foxa2	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	38	49	+	12.57	3.15e-05	0.923	TGTTTGCTTAGA
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	41	50	+	12.3448	3.15e-05	0.116	CGCAGATGCT
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	73	82	+	12.3448	3.15e-05	0.116	CACAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	73	82	+	12.3448	3.15e-05	0.116	CACAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	73	82	+	12.3448	3.15e-05	0.116	CACAGCTGCA
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	72	81	-	12.3448	3.15e-05	0.116	CACAGCTGCA
SRF	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	64	79	-	7.59016	3.15e-05	0.633	GGGCCAAATATGTGCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	67	81	+	11.9655	3.15e-05	0.00903	CGCCCGCCCACCCAA
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	13	27	-	11.9655	3.15e-05	0.00903	ACCCCTCCTCCACTC
Gabpa	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	46	56	-	12.459	3.15e-05	0.0463	CAGGAAGTGCA
Gabpa	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	59	69	+	12.459	3.15e-05	0.0463	CAGGAAGTGCA
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	52	-	11.973	3.15e-05	0.149	GGGGGTCAAGGGGCG
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	63	77	+	11.973	3.15e-05	0.149	GGGGGTCAAGGGGCG
NFYB	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	35	49	+	12.2885	3.15e-05	0.11	TTGCTGGCCAATGAG
NFYB	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	66	80	-	12.2885	3.15e-05	0.11	TTGCTGGCCAATGAG
ETV2	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	55	-	12.1803	3.15e-05	0.136	GACAGGAAGTA
ETV2	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	60	70	+	12.1803	3.15e-05	0.136	GACAGGAAGTA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	9	25	+	6.52727	3.15e-05	0.0207	GCCGACCCGCCCCTCAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	9	25	+	6.52727	3.15e-05	0.0207	GCCGACCCGCCCCTCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	26	42	+	6.52727	3.15e-05	0.0207	CCGACCCCACCCCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	26	42	+	6.52727	3.15e-05	0.0207	CCGACCCCACCCCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	18	34	-	6.52727	3.15e-05	0.0207	CCAGAGCCGCCCCCTCT
SP4	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	31	47	-	6.52727	3.15e-05	0.0207	CGTGCCCCGCCCCGCCC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	-	9.41818	3.16e-05	0.618	GCTAATATTAGT
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	-	9.41818	3.16e-05	0.618	GCTAATATTAGT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	68	+	8.59574	3.16e-05	0.0959	GCCCCCCCCCCGCG
RORA	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	32	41	-	12.9551	3.16e-05	0.864	AACAGGGTCA
RORA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	74	83	+	12.9551	3.16e-05	0.864	AACAGGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	74	83	+	12.9551	3.16e-05	0.864	AACAGGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	74	83	+	12.9551	3.16e-05	0.864	AACAGGGTCA
RORA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	74	83	+	12.9551	3.16e-05	0.864	AACAGGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	74	83	+	12.9551	3.16e-05	0.864	AACAGGGTCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	26	36	-	11.931	3.16e-05	0.0137	GCCACCCCCAT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	26	36	-	11.931	3.16e-05	0.0137	GCCACCCCCAT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	26	36	-	11.931	3.16e-05	0.0137	GCCACCCCCAT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	26	36	-	11.931	3.16e-05	0.0137	GCCACCCCCAT
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	4	17	+	7.87755	3.16e-05	0.0647	AGGGGCCTGTGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	74	87	-	7.87755	3.16e-05	0.0647	AGGGGCCTGTGGGG
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	32	42	+	9.70909	3.16e-05	0.862	TTTAAGGTCAT
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	32	42	+	9.70909	3.16e-05	0.862	TTTAAGGTCAT
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	52	62	+	9.70909	3.16e-05	0.862	TTTAAGGTCAT
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	52	62	+	9.70909	3.16e-05	0.862	TTTAAGGTCAT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	15	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	15	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	8	18	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	3	13	-	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	26	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	26	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	32	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	32	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	28	38	+	12.4808	3.16e-05	0.0102	GGCCCACCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	40	50	-	12.4808	3.16e-05	0.0102	ACTCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	53	63	+	12.4808	3.16e-05	0.0102	ACTCCGCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	44	54	-	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	71	+	12.4808	3.16e-05	0.0102	GCCCCTCCCAG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	77	87	-	12.4808	3.16e-05	0.0102	GGCCCACCCCT
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	15	28	+	3.61818	3.16e-05	0.458	GAGGTCAGAGGGCC
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	15	28	+	3.61818	3.16e-05	0.458	GAGGTCAGAGGGCC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	2	17	-	5.85455	3.16e-05	0.312	GAGCTCAAAGCCCAGC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	2	17	-	5.85455	3.16e-05	0.312	GAGCTCAAAGCCCAGC
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	71	80	+	12.2903	3.16e-05	1	CTTTTCCACA
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.0	71	80	+	12.2903	3.16e-05	1	CTTTTCCACA
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	71	80	+	12.2903	3.16e-05	1	CTTTTCCACA
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.0.0	71	80	+	12.2903	3.16e-05	1	CTTTTCCACA
GSX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	9.93651	3.16e-05	1	ACTAATTAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	79	99	-	11.102	3.16e-05	0.0126	AGAGCAGGCGGGAGGAGGGCT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	79	99	-	11.102	3.16e-05	0.0126	AGAGCAGGCGGGAGGAGGGCT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	79	99	-	11.102	3.16e-05	0.0126	AGAGCAGGCGGGAGGAGGGCT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	79	99	-	11.102	3.16e-05	0.0126	AGAGCAGGCGGGAGGAGGGCT
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	84	104	-	11.102	3.16e-05	0.0126	GAAGATGAGCGGGGGTGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	11	31	+	11.102	3.16e-05	0.0126	GAAGATGAGCGGGGGTGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	16	36	+	11.102	3.16e-05	0.0126	AGAGCAGGCGGGAGGAGGGCT
SP3	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	24	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	26	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	31	41	+	12.1382	3.16e-05	0.0165	ACCACGCCTCT
SP3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	44	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	51	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	51	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	55	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	70	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	102	+	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	1	11	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	13	23	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	13	23	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	18	28	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	21	31	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	21	31	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	45	55	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	68	78	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	71	81	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	74	84	-	12.1382	3.16e-05	0.0165	ACCACGCCTCT
SP3	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	91	101	-	12.1382	3.16e-05	0.0165	CTCCCGCCCCC
Klf12	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	4	18	+	10.3115	3.16e-05	0.0479	CGCCCCGCCCACCTG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	-	11.8448	3.16e-05	0.0554	GGCCTCTGGGGCG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	13	29	-	11.3776	3.16e-05	0.338	GGGTCACGTGGCGTGCG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	45	61	-	11.3776	3.16e-05	0.338	GGGTCACGTGGCGTGCG
MLX	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	12.0286	3.16e-05	0.205	GTCACGTGTC
MLX	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	12.0286	3.16e-05	0.205	GTCACGTGTC
MLX	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	12.0286	3.16e-05	0.205	GTCACGTGTC
MLX	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	12.0286	3.16e-05	0.205	GTCACGTGTC
MLX	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	12.0286	3.16e-05	0.205	GTCACGTGTC
MLX	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	12.0286	3.16e-05	0.205	GTCACGTGTC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	10	24	-	11.8103	3.16e-05	0.365	AGAACCAAGGCCAAC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	35	49	+	11.8103	3.16e-05	0.365	AGAACCAAGGCCAAC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	35	49	+	11.8103	3.16e-05	0.365	AGAACCAAGGCCAAC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	47	61	+	11.8103	3.16e-05	0.365	CAGGCCAAGGTCTCA
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	47	61	+	11.8103	3.16e-05	0.365	CAGGCCAAGGTCTCA
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	47	61	+	11.8103	3.16e-05	0.365	CAGGCCAAGGTCTCA
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	47	61	+	11.8103	3.16e-05	0.365	CAGGCCAAGGTCTCA
RXRG	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	99	112	+	4.61702	3.16e-05	0.48	GGGTTGGAAGGTCG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	2	19	+	-10.5921	3.16e-05	0.034	GGTGGGGAGGGGGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	96	113	-	-10.5921	3.16e-05	0.034	GGTGGGGAGGGGGGAGGG
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	12.4024	3.16e-05	0.129	GTCACGTGGC
TFEC	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	12.4024	3.16e-05	0.129	GTCACGTGCC
TFEC	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	12.4024	3.16e-05	0.129	GTCACGTGGC
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	27	40	-	10.1311	3.16e-05	0.176	CACCCCCCCCGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	54	67	+	10.1311	3.16e-05	0.176	CCCCCCCCTCGTCC
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	100	113	-	6.37879	3.16e-05	0.379	TACCCCACAGGCAG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	3	20	+	10.9634	3.16e-05	0.117	CATCCTCCGATTGGACCA
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	3	20	+	10.9634	3.16e-05	0.117	CATCCTCCGATTGGACCA
NFYA	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	58	75	-	10.9634	3.16e-05	0.117	CATCCTCCGATTGGACCA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	42	55	+	12.3788	3.16e-05	0.0428	GTGACTTCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	42	55	+	12.3788	3.16e-05	0.0428	GTGACTTCGGCCTC
ETS1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	12.569	3.16e-05	0.0819	ACCGGAAACT
ETS1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	12.569	3.16e-05	0.0819	ACCGGAAACT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	+	12.7636	3.16e-05	0.165	GATGAGTCACA
FOSL1	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	-	12.7636	3.16e-05	0.165	GATGAGTCACA
FOSL1	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	+	12.7636	3.16e-05	0.165	GATGAGTCACA
FOSL1	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	-	12.7636	3.16e-05	0.165	GATGAGTCACA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	101	114	+	8.94737	3.16e-05	0.56	GGGCCAGCTGTAGT
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	101	114	+	8.94737	3.16e-05	0.56	GGGCCAGCTGTAGT
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	-	12.2653	3.16e-05	0.0857	TGGCCCAGGGCT
HINFP	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	56	+	12.1364	3.16e-05	0.109	CCACGTGCGCGC
HINFP	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	59	70	-	12.1364	3.16e-05	0.109	CCACGTGCGCGC
Hes2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	31	43	+	11.5873	3.17e-05	0.475	GCCAGGCACGTGG
Hes2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	84	-	11.5873	3.17e-05	0.475	GCCAGGCACGTGG
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	84	-	11.5873	3.17e-05	0.475	GCCAGGCACGTGG
Hes2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	84	-	11.5873	3.17e-05	0.475	GCCAGGCACGTGG
Hes2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	84	-	11.5873	3.17e-05	0.475	GCCAGGCACGTGG
Npas2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	-	12.8361	3.17e-05	0.333	GGCACGTGGG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	+	12.8361	3.17e-05	0.333	GGCACGTGGG
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	+	12.8361	3.17e-05	0.333	GGCACGTGGG
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	-	12.8361	3.17e-05	0.333	GGCACGTGGG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	-	12.8361	3.17e-05	0.333	GGCACGTGGG
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	56	65	+	12.6364	3.17e-05	0.655	CCCAGCTGAT
NFKB2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	49	61	+	10.4394	3.17e-05	0.231	GAGGGCTTCCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	54	66	-	10.4394	3.17e-05	0.231	GAGGGCTTCCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	7	21	-	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	7	21	-	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	37	51	-	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	64	78	+	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	64	78	+	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	94	108	+	8.74138	3.17e-05	0.0346	CGCCGCCGCCGCGCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	95	109	+	8.74138	3.17e-05	0.0346	CGCCGCCTCCGCTGC
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	76	+	13.0816	3.17e-05	0.138	GCCAGCTGCTGTG
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	76	+	13.0816	3.17e-05	0.138	GCCAGCTGCTGTG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	92	+	13.0816	3.17e-05	0.138	GGCAGCTGCGCGC
Myod1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	39	51	-	13.0816	3.17e-05	0.138	GCCAGCTGCTGTG
SOX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	77	92	-	-8.74242	3.17e-05	1	AAACACTTGCATTATC
SOX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	77	92	-	-8.74242	3.17e-05	1	AAACACTTGCATTATC
SOX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	77	92	-	-8.74242	3.17e-05	1	AAACACTTGCATTATC
SOX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	77	92	-	-8.74242	3.17e-05	1	AAACACTTGCATTATC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	23	+	11.0714	3.17e-05	0.108	GGGGGGGGGGGGTGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	23	+	11.0714	3.17e-05	0.108	GGGGGGGGGGGGTGA
NR2C2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	17	31	+	11.0714	3.17e-05	0.108	AGGGGGCGGAGGCTG
NR2C2	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	17	31	+	11.0714	3.17e-05	0.108	AGGGGGCGGAGGCTG
NR2C2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	17	31	+	11.0714	3.17e-05	0.108	AGGGGGCGGAGGCTG
NR2C2	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	38	52	-	11.0714	3.17e-05	0.108	GGGCGGCAGGGGGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	63	77	+	11.0714	3.17e-05	0.108	GGGCGGCAGGGGGCG
NR2C2	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	85	99	-	11.0714	3.17e-05	0.108	AGGGGGCGGAGGCTG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	26	41	+	11.6364	3.17e-05	0.0374	CCCCGCCCCCCCCGCC
EGR4	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	27	42	+	11.6364	3.17e-05	0.0374	CTCCGCCCTCCCGCCC
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	22	37	-	11.6364	3.17e-05	0.0374	CCACACCCGCCCACAT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	40	55	+	11.6364	3.17e-05	0.0374	CCCCGCCCCCCCCGCC
EGR4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	38	53	-	11.6364	3.17e-05	0.0374	CCACACCCGCCCACAT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	38	53	-	11.6364	3.17e-05	0.0374	CCCCGCCCCCCCCGCC
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	62	77	+	11.6364	3.17e-05	0.0374	CCACACCCGCCCACAT
EGR4	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	78	93	+	11.6364	3.17e-05	0.0374	CCACACCCGCCCACAT
EGR4	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	73	88	-	11.6364	3.17e-05	0.0374	CTCCGCCCTCCCGCCC
PITX3	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	10	18	-	11.7115	3.17e-05	1	CATAATCCC
PITX3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	40	48	+	11.7115	3.17e-05	1	CATAATCCC
PITX3	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	33	41	-	11.7115	3.17e-05	1	CATAATCCC
PITX3	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	67	75	-	11.7115	3.17e-05	1	CATAATCCC
PITX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	83	91	+	11.7115	3.17e-05	1	CATAATCCC
PITX3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	83	91	+	11.7115	3.17e-05	1	CATAATCCC
ZIC3	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	40	-	10.0429	3.17e-05	0.101	CCACCCCTGCGGGGA
CTCF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	2	20	-	10.4098	3.17e-05	0.0988	CGGCCTCCGGGCGGCAGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	2	20	-	10.4098	3.17e-05	0.0988	CGGCCTCCGGGCGGCAGGG
CTCF	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	55	73	+	10.4098	3.17e-05	0.0988	CGGCCTCCGGGCGGCAGGG
CTCF	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	42	60	-	10.4098	3.17e-05	0.0988	CGGCCTCCGGGCGGCAGGG
CTCF	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	95	113	+	10.4098	3.17e-05	0.0988	CGGCCTCCGGGCGGCAGGG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	1	12	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	1	12	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	1	12	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	1	12	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	11	22	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	22	33	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	11	22	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	11	22	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	36	47	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	36	47	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	36	47	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	36	47	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	92	103	+	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	82	93	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	82	93	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	82	93	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
INSM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	82	93	-	11.9286	3.17e-05	0.146	GGGCAGGGGTTA
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	25	36	+	11.8448	3.17e-05	0.33	ACGCCCACCCGG
GLI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	25	36	+	11.8448	3.17e-05	0.33	ACGCCCACCCGG
GLI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	25	36	+	11.8448	3.17e-05	0.33	ACGCCCACCCGG
GLI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	25	36	+	11.8448	3.17e-05	0.33	ACGCCCACCCGG
MEF2C	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	94	108	-	12.2034	3.17e-05	0.742	AGTGCAAAAATAGTA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	3	13	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	9	19	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	1	11	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	11	21	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	1	11	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	2	12	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	2	12	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	4	14	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	4	14	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	16	26	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	16	26	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	16	26	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	16	26	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	17	27	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	17	27	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	17	27	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	7	17	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	7	17	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	17	27	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	17	27	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	18	28	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	18	28	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	18	28	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	18	28	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	9	19	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	9	19	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	21	31	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	12	22	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	12	22	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	12	22	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	12	22	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	12	22	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	24	34	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	15	25	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	17	27	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	17	27	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	17	27	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	29	39	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	30	40	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	31	41	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	31	41	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	23	33	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	23	33	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	23	33	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	23	33	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	23	33	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	34	44	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	25	35	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	25	35	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	25	35	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	27	37	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	27	37	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	30	40	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	40	50	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	30	40	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	31	41	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	31	41	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	31	41	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	31	41	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	31	41	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	32	42	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	33	43	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	33	43	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	33	43	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	33	43	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	33	43	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	34	44	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	34	44	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	44	54	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	34	44	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	47	57	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	37	47	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	47	57	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	48	58	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	38	48	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	38	48	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	38	48	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	38	48	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	39	49	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	39	49	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	50	60	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	50	60	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	50	60	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	51	61	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	53	63	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	55	65	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	55	65	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	55	65	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	55	65	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	55	65	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	57	67	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	57	67	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	58	68	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	60	70	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	61	71	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	61	71	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	61	71	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	61	71	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	51	61	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	51	61	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	51	61	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	51	61	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	62	72	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	62	72	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	52	62	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	53	63	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	54	64	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	54	64	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	55	65	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	66	76	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	57	67	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	57	67	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	67	77	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	57	67	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	58	68	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	59	69	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	59	69	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	70	80	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	71	81	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	71	81	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	61	71	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	72	82	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	75	85	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	65	75	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	66	76	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	67	77	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	68	78	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	68	78	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	68	78	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	68	78	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	72	82	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	74	84	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	75	85	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	75	85	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	76	86	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	76	86	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	76	86	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	79	89	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	79	89	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	90	100	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	81	91	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	84	94	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	86	96	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	88	98	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	98	108	+	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	102	112	-	12.3485	3.17e-05	0.0428	GGCCCCGCCCC
SP4	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	93	109	+	6.50909	3.17e-05	0.0207	TCCGCCCCGCCCAAGCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	6	22	-	6.50909	3.17e-05	0.0207	TCCGCCCCGCCCAAGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	6	22	-	6.50909	3.17e-05	0.0207	TCCGCCCCGCCCAAGCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	6	22	-	6.50909	3.17e-05	0.0207	TCCGCCCCGCCCAAGCA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	21	34	-	12.6923	3.17e-05	0.185	ACAGCATGAGTCAT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	+	11.9508	3.17e-05	0.0641	GCCCCCGCGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	-	11.9508	3.17e-05	0.0641	GCCCCCGCGGGCC
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	+	11.9508	3.17e-05	0.0641	GCCCCCGCGGGCC
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	89	103	+	12.3803	3.17e-05	0.341	ATAGAGAAAACACAT
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	89	103	+	12.3803	3.17e-05	0.341	ATAGAGAAAACACAT
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	81	95	-	12.3803	3.17e-05	0.341	GGAATGTAAACAGTG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	81	95	-	12.3803	3.17e-05	0.341	GGAATGTAAACAGTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	41	54	+	5.69091	3.17e-05	0.146	AGATTCAGGAAGTT
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	41	54	+	5.69091	3.17e-05	0.146	AGATTCAGGAAGTT
SPI1	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	49	62	+	5.69091	3.17e-05	0.146	ATAAATAGGAAGTA
EOMES	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	64	76	+	12.3171	3.17e-05	1	TAGGTGTGAGTAA
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	64	76	+	12.3171	3.17e-05	1	TAGGTGTGAGTAA
EOMES	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	39	51	-	12.3171	3.17e-05	1	TAGGTGTGAGTAA
ELK4	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	37	-	12.5455	3.17e-05	0.0498	ACATTTCCGGT
ELK4	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	68	78	-	12.5455	3.17e-05	0.0498	CAACTTCCGCC
ELK4	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	107	-	12.5455	3.17e-05	0.0498	ACATTTCCGGT
ELK4	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	8	18	+	12.5455	3.17e-05	0.0498	ACATTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	37	47	+	12.5455	3.17e-05	0.0498	CAACTTCCGCC
ELK4	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	78	88	+	12.5455	3.17e-05	0.0498	ACATTTCCGGT
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	+	12.4727	3.17e-05	0.0665	GGCCCGAGGCT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	62	79	+	12.2	3.18e-05	0.965	GCAATCACAGCATTTTTT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	63	80	-	12.2	3.18e-05	0.965	GCAATCACAGCATTTTTT
MAFF	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	89	106	-	12.2	3.18e-05	0.965	ACTGACTCAGCAGCAAAG
HEY1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	12.7818	3.18e-05	0.113	GCCACGTGCT
HEY1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	12.7818	3.18e-05	0.113	CGCACGTGAC
HEY1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	12.7818	3.18e-05	0.113	GCCACGTGCT
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	12.7818	3.18e-05	0.113	GCCACGTGCT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	12.7818	3.18e-05	0.113	GCCACGTGCT
HEY1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	12.7818	3.18e-05	0.113	CGCACGTGAC
RUNX1	WILDTYPE__Antisense.noflip.NA__chr11:128565847..128565961,-__165.1.0.0	12	22	-	12.2931	3.18e-05	0.215	AGCTGTGGTCT
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	87	97	+	12.2931	3.18e-05	0.215	AGCTGTGGTCT
RUNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	87	97	+	12.2931	3.18e-05	0.215	AGCTGTGGTCT
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	97	107	+	12.2931	3.18e-05	0.215	AGCTGTGGTCT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	97	107	+	12.2931	3.18e-05	0.215	AGCTGTGGTCT
SPDEF	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	38	48	+	11.9273	3.18e-05	0.225	ACCCGGAAACA
SPDEF	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	77	-	11.9273	3.18e-05	0.225	ACCCGGAAACA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	+	12.3455	3.18e-05	0.0893	GCCCCTGGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	+	12.3455	3.18e-05	0.0893	GCCCCTGGGGCA
IRF2	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	61	78	+	7.74312	3.18e-05	0.589	CGGAAATGAAAGTGGAAG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	7	15	+	13.1573	3.18e-05	0.191	GCGACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	7	15	+	13.1573	3.18e-05	0.191	GCGACGTGT
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	7	15	+	13.1573	3.18e-05	0.191	GCGACGTGT
RREB1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	4	23	-	6.13761	3.18e-05	0.0492	GCTCCAAACACACACACACA
RREB1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	92	111	+	6.13761	3.18e-05	0.0492	GCTCCAAACACACACACACA
RAX	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	80	89	-	11.5593	3.18e-05	1	GTCAATTAAT
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	+	11.8276	3.18e-05	0.0554	GGCCCGCGGGGGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	+	11.8276	3.18e-05	0.0554	GGCCTCCCGGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	-	11.8276	3.18e-05	0.0554	GGCCCGCGGGGGC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	-	11.8276	3.18e-05	0.0554	GGCCTCCCGGGCT
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	-	11.8276	3.18e-05	0.0554	GGCCCGCGGGGGC
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	1	12	+	11.1091	3.18e-05	0.0999	AAAGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	1	12	+	11.1091	3.18e-05	0.0999	AAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	1	12	+	11.1091	3.18e-05	0.0999	AAAGCGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	1	12	+	11.1091	3.18e-05	0.0999	AAAGCGGAAGCG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	67	78	+	11.1091	3.18e-05	0.0999	CAGGCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	114	-	11.1091	3.18e-05	0.0999	AAAGCGGAAGCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	96	106	+	12.6552	3.18e-05	0.0451	CCGCGGGAGCA
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	11	24	-	8.57447	3.18e-05	0.0959	GCCCCCCTGGAGAG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	11	24	-	8.57447	3.18e-05	0.0959	GCCCCCCTGGAGAG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	74	87	-	8.57447	3.18e-05	0.0959	CGCCCCCCGCCGGC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	91	104	+	8.57447	3.18e-05	0.0959	GGCTCCCCGCTGAC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	93	106	+	8.57447	3.18e-05	0.0959	GCCCCCCTGGAGAG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	93	106	+	8.57447	3.18e-05	0.0959	GCCCCCCTGGAGAG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	17	28	+	12.3818	3.18e-05	0.0548	CCCCCTCAGCCA
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	28	39	-	12.3818	3.18e-05	0.0548	CGCCCCACGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	76	87	+	12.3818	3.18e-05	0.0548	CGCCCCACGGCC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	66	79	-	1.21818	3.18e-05	0.664	GAAAAACCGAAAGC
USF1	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	33	43	-	12.449	3.18e-05	0.132	ATCATGTGACA
USF1	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	66	+	12.449	3.18e-05	0.132	ATCATGTGACA
USF1	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	49	59	-	12.449	3.18e-05	0.132	ATCATGTGACA
SP2	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	4	18	+	11.9483	3.18e-05	0.00909	AGCCCGCCTCTGAGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	26	40	+	11.9483	3.18e-05	0.00909	CCCCTGCCCTCCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	26	40	-	11.9483	3.18e-05	0.00909	CTCCCACCCCGCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	38	52	-	11.9483	3.18e-05	0.00909	CCCCTGCCCTCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	38	52	-	11.9483	3.18e-05	0.00909	CCCCTGCCCTCCGCC
SP2	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	69	83	-	11.9483	3.18e-05	0.00909	TCTCCTCCTCCCGCG
SP2	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	97	111	-	11.9483	3.18e-05	0.00909	AGCCCGCCTCTGAGC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	7	17	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	43	+	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	29	39	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	29	39	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	52	62	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	52	62	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	59	69	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	72	82	-	11.9138	3.18e-05	0.0137	GCCCCACCTCC
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	2	16	-	12.2692	3.18e-05	0.11	AACTCAACCAATGGA
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	2	16	-	12.2692	3.18e-05	0.11	AACTCAACCAATGGA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	12	22	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	12	22	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	12	22	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	12	22	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	30	40	+	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	30	40	+	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	30	40	+	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	30	40	+	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	92	102	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	92	102	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	92	102	-	12.4615	3.18e-05	0.0103	GGTCCGCCCCT
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	50	70	-	7.15306	3.18e-05	0.208	CTCAGTATCGTGAACAGGGCA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	50	70	-	7.15306	3.18e-05	0.208	CTCAGTATCGTGAACAGGGCA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	9	29	+	7.15306	3.18e-05	0.208	CTCAGTATCGTGAACAGGGCA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	9	29	+	7.15306	3.18e-05	0.208	CTCAGTATCGTGAACAGGGCA
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	-	12.4615	3.18e-05	0.0703	AGCCGAAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	+	12.4615	3.18e-05	0.0703	AGCCGAAGGCG
BHLHE41	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	10.4615	3.18e-05	0.145	GTCGCGTGAC
BHLHE41	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	10.4615	3.18e-05	0.145	GTCGCGTGAC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	3	15	-	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
NFKB2	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	100	112	+	10.4242	3.18e-05	0.231	TGGTGATTTCCCA
RFX5	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	-	8.67241	3.18e-05	0.19	TGTCACCATGGGGACT
RFX5	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	+	8.67241	3.18e-05	0.19	TGTCACCATGGGGACT
Arntl	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	27	36	+	12.4918	3.18e-05	0.184	GCTCACGTGA
Arntl	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	29	38	+	12.4918	3.18e-05	0.184	GCTCACGTGA
Arntl	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	77	86	-	12.4918	3.18e-05	0.184	GCTCACGTGA
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	24	37	-	10.1148	3.18e-05	0.176	ACCCCCCCACCGAG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	24	37	-	10.1148	3.18e-05	0.176	ACCCCCCCACCGAG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	23	36	+	7.85714	3.18e-05	0.0647	GGGGGGGAGGGGTA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	50	64	+	8.72414	3.18e-05	0.0347	GCACACCCACGTACG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	65	79	-	8.72414	3.18e-05	0.0347	GCACACCCACGTACG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	4	11	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	4	11	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	1	8	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	18	25	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	25	32	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	31	38	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	42	49	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	41	48	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	41	48	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	67	74	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	66	73	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	68	75	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	68	75	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	77	84	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	83	90	-	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	90	97	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	93	100	+	12.0395	3.18e-05	0.388	GTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	93	100	+	12.0395	3.18e-05	0.388	GTACGTGC
Mycn	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	14	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	7	14	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	7	14	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	26	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	26	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	26	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	26	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	26	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	15	22	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	17	24	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	17	24	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	21	28	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	22	29	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	28	35	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	28	35	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	48	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	51	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	51	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	51	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	45	52	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	54	61	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	54	61	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	71	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	64	71	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	67	74	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	67	74	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	67	74	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	67	74	-	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	100	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	106	+	12.8689	3.18e-05	0.208	CCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	97	104	-	12.8689	3.18e-05	0.208	CCCACGTG
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	93	113	+	11.2347	3.19e-05	0.929	GAGTTGCTTACTCATCTCCTT
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	93	113	+	11.2347	3.19e-05	0.929	GAGTTGCTTACTCATCTCCTT
MAFG	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	2	22	-	11.2347	3.19e-05	0.929	GAGTTGCTTACTCATCTCCTT
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	62	71	+	11.6098	3.19e-05	0.488	GCAATCACAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	71	80	-	11.6098	3.19e-05	0.488	GCAATCACAG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	10	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	10	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	25	34	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	35	44	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	60	69	+	12.3944	3.19e-05	0.104	ACCGGCAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	60	69	+	12.3944	3.19e-05	0.104	ACCGGCAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	61	70	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	61	70	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	61	70	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	61	70	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	70	79	+	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	78	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	80	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	82	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	82	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	82	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	82	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	90	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
ETV3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	91	-	12.3944	3.19e-05	0.104	GCCGGAAGTT
Arx	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	67	83	-	12.2857	3.19e-05	1	TTCTGTTAATTAATCTT
Sox3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	24	33	+	12.7931	3.19e-05	0.659	CTTTTGTCCC
Sox3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	24	33	+	12.7931	3.19e-05	0.659	CTTTTGTCCC
HOXD13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	3	12	+	12.7302	3.19e-05	1	CCCATAAAAG
HOXD13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	3	12	+	12.7302	3.19e-05	1	CCCATAAAAG
RFX4	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	14	29	+	11.4394	3.19e-05	0.197	GGTTGCCGCGACTACA
RFX4	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	86	101	-	11.4394	3.19e-05	0.197	GGTTGCCGCGACTACA
POU4F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	16	31	-	11.9528	3.19e-05	1	ATGAAATTTTAATGCG
POU4F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	16	31	-	11.9528	3.19e-05	1	ATGAAATTTTAATGCG
JUND	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	29	39	+	12.4894	3.19e-05	0.174	TGTGATTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	21	31	-	12.4894	3.19e-05	0.174	TGTGATTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	81	91	-	12.4894	3.19e-05	0.174	TGTGATTCATG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	+	11.9836	3.19e-05	0.0586	AGCCGCCCGGGGA
Tcf21	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	40	53	-	8.92105	3.19e-05	0.56	GGGCCAGCTGCTGT
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	62	75	+	8.92105	3.19e-05	0.56	GGGCCAGCTGCTGT
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	62	75	+	8.92105	3.19e-05	0.56	GGGCCAGCTGCTGT
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	62	75	+	8.92105	3.19e-05	0.56	GGGCCAGCTGCTGT
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	62	75	+	8.92105	3.19e-05	0.56	GGGCCAGCTGCTGT
KLF14	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	27	40	+	10.6897	3.19e-05	0.0269	GACTCCGCCCCTAC
KLF14	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	29	42	-	10.6897	3.19e-05	0.0269	GACTCCGCCCCTAC
KLF14	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	73	86	+	10.6897	3.19e-05	0.0269	GACTCCGCCCCTAC
KLF14	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	75	88	-	10.6897	3.19e-05	0.0269	GACTCCGCCCCTAC
RXRG	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	48	-	4.57447	3.19e-05	0.48	GGTGACAAAGGTCA
RXRG	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	67	80	+	4.57447	3.19e-05	0.48	GGTGACAAAGGTCA
EBF1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	17	30	-	10.9836	3.19e-05	0.365	GATCCCACGGGAAG
GLIS3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	29	42	-	6.34848	3.19e-05	0.379	CACCCCCCACCGCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	78	89	-	12.2	3.19e-05	0.217	CGCGCCCCCCGC
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	70	81	+	12.2	3.19e-05	0.217	CGCGCCCCCCGC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	10	19	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	16	25	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	19	28	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	19	28	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	19	28	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	19	28	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	22	31	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	46	55	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	52	61	+	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	5	14	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	5	14	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	32	41	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	32	41	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	54	63	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	60	69	-	11.8991	3.19e-05	0.047	CCCCCCCTCC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	9	18	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	1	10	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	1	10	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	10	19	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	5	14	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	14	23	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	15	24	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	28	37	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	28	37	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	28	37	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	28	37	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	30	39	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	33	42	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	33	42	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	33	42	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	33	42	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	35	44	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	38	47	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	54	63	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	52	61	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	78	87	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	72	81	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	72	81	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	87	96	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	78	87	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	101	110	+	12.2551	3.19e-05	0.0154	AGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	96	105	-	12.2551	3.19e-05	0.0154	AGGGCGGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	16	36	-	11.0816	3.19e-05	0.0127	GGAGGCCGGGCTGGCGGGGAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	48	68	-	11.0816	3.19e-05	0.0127	GGAGGCCGGGCTGGCGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	58	78	-	11.0816	3.19e-05	0.0127	GGGGAGGGGAGAGCAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	58	78	-	11.0816	3.19e-05	0.0127	GGGGAGGGGAGAGCAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	74	94	-	11.0816	3.19e-05	0.0127	GGGAGAGGCGCAGGAGGGAAC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	74	94	-	11.0816	3.19e-05	0.0127	GGGAGAGGCGCAGGAGGGAAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	35	55	+	11.0816	3.19e-05	0.0127	GAGGCGGGGAGGAGGGGGGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	43	63	+	11.0816	3.19e-05	0.0127	GAGGGAGTGTGGTGGTGAAAA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	47	67	+	11.0816	3.19e-05	0.0127	GGAGGCCGGGCTGGCGGGGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	87	107	+	11.0816	3.19e-05	0.0127	GAAGCAGCAGAAGCAAAGGGC
CTCF	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	61	79	-	10.3934	3.19e-05	0.0992	GGGACGCTAGGGGGAGGGC
Gabpa	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	19	29	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	44	54	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	44	54	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	44	54	-	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	61	71	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	72	82	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	72	82	+	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
Gabpa	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	86	96	-	12.4098	3.19e-05	0.0463	CAGGAAGTGAG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	+	12.7455	3.19e-05	0.165	TGTGAGTCATT
IRF2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	35	52	+	7.72477	3.19e-05	0.589	TGAAAATAAAAGCAAGCC
IRF2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	48	65	+	7.72477	3.19e-05	0.589	TGAAAATAAAAGCAAGCC
IRF2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	50	67	-	7.72477	3.19e-05	0.589	TGAAAATAAAAGCAAGCC
IRF2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	63	80	-	7.72477	3.19e-05	0.589	TGAAAATAAAAGCAAGCC
SP8	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	31	+	12.0658	3.19e-05	0.0247	ACCACGCCCACG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	23	33	-	8.34694	3.19e-05	0.228	CATGACCCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	23	33	-	8.34694	3.19e-05	0.228	CATGACCCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	37	47	+	8.34694	3.19e-05	0.228	CATGACCCATG
FOXP2	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	52	62	-	13.1515	3.19e-05	0.978	TTGTAAACAGC
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	6	19	+	7.84694	3.19e-05	0.0647	GGTGCGCACGGGTG
PLAG1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	28	41	-	7.84694	3.19e-05	0.0647	GGTGCGCACGGGTG
PLAG1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	74	87	+	7.84694	3.19e-05	0.0647	GGTGCGCACGGGTG
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	96	109	-	7.84694	3.19e-05	0.0647	GGTGCGCACGGGTG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	66	86	+	10.7581	3.19e-05	0.157	CCTCCCTTCCTCTTTCCTCAT
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	16	29	+	10.4242	3.19e-05	0.253	ACGCCACGTGACTC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	48	61	+	10.4242	3.19e-05	0.253	ACGCCACGTGACTC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	30	39	-	12.3077	3.19e-05	0.765	ATTACACAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	30	39	-	12.3077	3.19e-05	0.765	ATTACACAAT
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	40	49	+	12.3077	3.19e-05	0.765	ATTACACAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	40	49	+	12.3077	3.19e-05	0.765	ATTACACAAT
HOXC13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	29	39	-	12.2258	3.2e-05	1	GATCGTAAAAA
HOXC13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	29	39	-	12.2258	3.2e-05	1	GATCGTAAAAA
HOXC13	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	76	86	+	12.2258	3.2e-05	1	GATCGTAAAAA
KLF5	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	1	10	-	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	26	35	-	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	30	39	-	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	59	68	-	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	64	73	-	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	27	36	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	27	36	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	27	36	+	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	27	36	+	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	35	44	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	35	44	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	42	51	+	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	42	51	+	12.6939	3.2e-05	0.0148	ACCCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	86	95	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	105	114	+	12.6939	3.2e-05	0.0148	GCTCCACCCA
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	33	44	-	11.9082	3.2e-05	0.146	AGGCAGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	33	44	-	11.9082	3.2e-05	0.146	AGGCAGGGGGTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	101	112	-	11.8276	3.2e-05	0.33	GCGGCCACCCGG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	101	112	-	11.8276	3.2e-05	0.33	GCGGCCACCCGG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	-	11.8103	3.2e-05	0.0554	AGCCCCGGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	+	11.8103	3.2e-05	0.0554	GGCCCCGGCGGCT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	51	-	11.7455	3.2e-05	0.101	CGCCCCCTGCGGGCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	51	-	11.7455	3.2e-05	0.101	CGCCCCCTGCGGGCG
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	30	+	12.5116	3.2e-05	0.433	GACAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	30	+	12.5116	3.2e-05	0.433	GACAGGTGG
SNAI2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	41	49	-	12.5116	3.2e-05	0.433	GACAGGTGG
SNAI2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	74	+	12.5116	3.2e-05	0.433	GACAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	75	83	-	12.5116	3.2e-05	0.433	GACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	75	83	-	12.5116	3.2e-05	0.433	GACAGGTGG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	20	35	-	11.6182	3.2e-05	0.0374	GCCCGCCCGCCCGCAA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	20	35	-	11.6182	3.2e-05	0.0374	GCCCGCCCGCCCGCAA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	25	40	-	11.6182	3.2e-05	0.0374	GCCCGCCCACTCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	25	40	-	11.6182	3.2e-05	0.0374	GCCCGCCCACTCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	49	64	+	11.6182	3.2e-05	0.0374	TGCCTCCCACCCCTTC
EGR4	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	75	90	+	11.6182	3.2e-05	0.0374	GCCCGCCCACTCCTCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	80	95	+	11.6182	3.2e-05	0.0374	GCCCGCCCGCCCGCAA
EGR4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	76	91	-	11.6182	3.2e-05	0.0374	GCACGCCCGCCCAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
ETV5	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.8909	3.2e-05	0.0794	GGCGGAAGTG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	33	43	-	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	33	43	-	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	33	43	-	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	33	43	-	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	84	94	+	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	84	94	+	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	84	94	+	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	84	94	+	13.0213	3.2e-05	0.211	GATGAGTCACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	80	90	-	13.0213	3.2e-05	0.211	GATGAGTCACC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	47	60	+	12.6731	3.2e-05	0.185	GAAGTCTGAGTCAT
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	55	68	-	12.6731	3.2e-05	0.185	GAAGTCTGAGTCAT
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	25	45	-	11.2245	3.2e-05	0.929	AGAGAGCTGAGTCACCATGAT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	9	23	-	10.2787	3.2e-05	0.0484	GGCCACGTCCCGCTC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	26	40	+	10.2787	3.2e-05	0.0484	GGCCACATCCTTCCT
INSM1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	51	62	+	11.8878	3.2e-05	0.146	GGGCTGGGGGAA
INSM1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	53	64	-	11.8878	3.2e-05	0.146	GGGCTGGGGGAA
ZIC1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	13	26	-	8.55319	3.2e-05	0.0959	TGCCTCCCACGGAG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	89	102	+	8.55319	3.2e-05	0.0959	TGCCTCCCACGGAG
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	31	41	+	12.6538	3.2e-05	0.273	GGATTGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	33	43	-	12.6538	3.2e-05	0.273	CGAATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	74	84	-	12.6538	3.2e-05	0.273	GGATTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	74	84	-	12.6538	3.2e-05	0.273	GGATTGAGTCA
IRF8	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	67	80	-	1.18182	3.2e-05	0.664	CAGAAAAAGAAACT
CENPB	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	17	31	+	11.8462	3.2e-05	0.793	CCCCCATCTTACAAA
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	35	49	+	11.8462	3.2e-05	0.793	CCCGCCTACCACGAG
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	62	76	+	11.8462	3.2e-05	0.793	CCCGCCTACCACGAG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	7	17	+	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	15	25	+	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	15	25	+	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	22	32	+	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	22	32	+	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	23	33	-	12.3182	3.21e-05	0.0429	AGCCCCTCCCA
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	23	36	+	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	23	36	+	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	23	36	+	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	35	48	-	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	35	48	-	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	35	48	-	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
GLIS2	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	79	92	-	10.0984	3.21e-05	0.176	CCCCCCCCGCTGTC
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	28	38	+	12.9091	3.21e-05	0.148	AAATGAGTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	29	39	+	12.9091	3.21e-05	0.148	GTATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	31	41	-	12.9091	3.21e-05	0.148	GTATGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	31	41	-	12.9091	3.21e-05	0.148	GTATGAGTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	32	42	-	12.9091	3.21e-05	0.148	AAGTGAGTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	65	75	+	12.9091	3.21e-05	0.148	AAGTGAGTCAT
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	59	78	-	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	59	78	-	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
RREB1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	64	83	-	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	32	51	+	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	32	51	+	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
RREB1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	37	56	+	6.11009	3.21e-05	0.0492	GCCCCACCCACCCGACCATA
SP4	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	54	70	+	6.47273	3.21e-05	0.0209	GGGGCTCCTCCCCCTTC
SP4	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	45	61	-	6.47273	3.21e-05	0.0209	GGGGCTCCTCCCCCTTC
ZIC3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	2	16	+	10.0143	3.21e-05	0.101	GGACCCCCACCGCGG
ZIC3	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	53	67	+	10.0143	3.21e-05	0.101	GGACCCCCACCGCGG
ZIC3	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	48	62	-	10.0143	3.21e-05	0.101	GGACCCCCACCGCGG
ZIC3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	99	113	-	10.0143	3.21e-05	0.101	GGACCCCCACCGCGG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	+	12.3636	3.21e-05	0.0548	AGCCCTGGGCCA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	+	12.3636	3.21e-05	0.0548	TGCCCGGAGCCG
ZNF143	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	42	57	+	4.46552	3.21e-05	0.299	TTCCCACATTCCCTCA
EN2	WILDTYPE__Enhancer.flip.sense__chr17:25821695..25821809,-__2061.1.0.0	42	51	-	11.2542	3.21e-05	1	CCCAATCAGC
EN2	FLIPPED__Enhancer.flip.antisense__chr17:25821695..25821809,+__2544.1.0.0	64	73	+	11.2542	3.21e-05	1	CCCAATCAGC
PAX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	22	38	-	3.70909	3.21e-05	0.463	GGTTCCGCCTGACAGCC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	22	38	-	3.70909	3.21e-05	0.463	GGTTCCGCCTGACAGCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	80	91	-	12.1857	3.21e-05	0.217	CGCGCCCACAGT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	80	91	-	12.1857	3.21e-05	0.217	CGCGCCCACAGT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	80	91	-	12.1857	3.21e-05	0.217	CGCGCCCACAGT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	80	91	-	12.1857	3.21e-05	0.217	CGCGCCCACAGT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	80	91	-	12.1857	3.21e-05	0.217	CGCGCCCACAGT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	55	68	-	5.65455	3.21e-05	0.146	TGAATGAGGAAGAA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	76	89	+	5.65455	3.21e-05	0.146	TGAATGAGGAAGAA
FEV	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.4038	3.21e-05	0.0998	GCCGGATGTG
FEV	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.4038	3.21e-05	0.0998	GCCGGATGTG
FEV	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.4038	3.21e-05	0.0998	GCCGGATGTG
FEV	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.4038	3.21e-05	0.0998	GCCGGATGTG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	70	80	+	12.8367	3.21e-05	0.0985	AGCATGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	70	80	+	12.8367	3.21e-05	0.0985	AGCATGTGACA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	71	85	+	11.9459	3.21e-05	0.15	CTGGGGAAGAGGCCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	71	85	+	11.9459	3.21e-05	0.15	CTGGGGAAGAGGCCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	11	24	-	11.7885	3.21e-05	0.0159	GCTCCGCCTCTGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	33	46	+	11.7885	3.21e-05	0.0159	GCTCCGCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	21	34	-	11.7885	3.21e-05	0.0159	TCTCCACCCCCTTG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	21	34	-	11.7885	3.21e-05	0.0159	TCTCCACCCCCTTG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	45	58	+	11.7885	3.21e-05	0.0159	TCTCCACCCCCTTG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	45	58	+	11.7885	3.21e-05	0.0159	TCTCCACCCCCTTG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	33	46	-	11.7885	3.21e-05	0.0159	CATCCTCCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	33	46	-	11.7885	3.21e-05	0.0159	CATCCTCCGCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	33	46	-	11.7885	3.21e-05	0.0159	CATCCTCCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	33	46	-	11.7885	3.21e-05	0.0159	CATCCTCCGCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	4	18	+	11.931	3.21e-05	0.00912	GCTCCGCCTACACAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	5	19	+	11.931	3.21e-05	0.00912	CGCCCGCCCCACGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	5	19	+	11.931	3.21e-05	0.00912	CGCCCGCCCCACGAG
SP2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	34	48	+	11.931	3.21e-05	0.00912	GCCCTGCCTCCACCA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	36	50	+	11.931	3.21e-05	0.00912	TCTCCGCCCCGCGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	36	50	+	11.931	3.21e-05	0.00912	TCTCCGCCCCGCGCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	54	68	+	11.931	3.21e-05	0.00912	CCTCCTCCTCTGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	54	68	+	11.931	3.21e-05	0.00912	CCTCCTCCTCTGCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	87	+	11.931	3.21e-05	0.00912	GCCCCACCCAGTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	11	25	-	11.931	3.21e-05	0.00912	GCCCCGCTCCACTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	11	25	-	11.931	3.21e-05	0.00912	GCCCCGCTCCACTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	28	42	-	11.931	3.21e-05	0.00912	GCCCCACCCAGTTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	45	59	-	11.931	3.21e-05	0.00912	CGCCCGCCCCGAACC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	49	63	-	11.931	3.21e-05	0.00912	CCTCCTCCTCTGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	49	63	-	11.931	3.21e-05	0.00912	CCTCCTCCTCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	65	79	-	11.931	3.21e-05	0.00912	TCTCCGCCCCGCGCT
E2F1	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	101	112	-	12.2951	3.21e-05	0.41	CTTGGCGCCTTT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	-	12.6	3.21e-05	0.0506	AGCCGCCGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	-	12.6	3.21e-05	0.0506	AGCCGCCGGCA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	37	47	+	12.6	3.21e-05	0.0506	ACCCCGAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	+	12.6	3.21e-05	0.0506	CGCCCTAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	+	12.6	3.21e-05	0.0506	CGCCCTAGGCT
Zfx	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	10	23	+	12.3485	3.21e-05	0.0433	ACAGCCACGGCCTC
Zfx	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	92	105	-	12.3485	3.21e-05	0.0433	ACAGCCACGGCCTC
NEUROD2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	12.2414	3.21e-05	1	AGCATATGGC
NEUROD2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	12.2414	3.21e-05	1	AGCATATGGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	15	28	+	10.6724	3.21e-05	0.027	CGACACGCCTCCAA
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	16	29	+	10.6724	3.21e-05	0.027	TACCACGCCGCCCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	20	33	-	10.6724	3.21e-05	0.027	CGGCCCGCCCCCCG
KLF14	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	87	100	-	10.6724	3.21e-05	0.027	CGACACGCCTCCAA
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	12.0862	3.21e-05	0.16	AACACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	12.0862	3.21e-05	0.16	AACACGTGCC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	+	8.30612	3.21e-05	0.228	CATGACTCAGC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	-	8.30612	3.21e-05	0.228	CATGACTCAGC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	79	89	+	12.2759	3.21e-05	0.215	CTGTGTGGTTT
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	98	109	+	12.1923	3.22e-05	0.188	GAGAATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	98	109	+	12.1923	3.22e-05	0.188	GAGAATGGCGGC
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	16	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	16	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	25	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	27	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	32	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	25	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	39	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	53	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	58	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	58	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	58	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	58	+	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	71	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	71	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	75	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	83	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	83	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	83	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	83	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	92	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
ERF	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	108	-	12.3571	3.22e-05	0.0886	ACAGGAAATG
Tcf12	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	32	+	13.102	3.22e-05	0.154	CACAGCTGCGA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	41	51	-	13.102	3.22e-05	0.154	AGCAGCTGGCA
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	83	93	-	13.102	3.22e-05	0.154	CACAGCTGCGA
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	83	93	-	13.102	3.22e-05	0.154	CACAGCTGCGA
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	83	93	-	13.102	3.22e-05	0.154	CACAGCTGCGA
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	83	93	-	13.102	3.22e-05	0.154	CACAGCTGCGA
Tcf12	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	86	96	-	13.102	3.22e-05	0.154	GGCAGCTGTAG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	9	21	-	11.9672	3.22e-05	0.0586	TGCCTGCAAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	9	21	-	11.9672	3.22e-05	0.0586	TGCCTGCAAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	+	11.9672	3.22e-05	0.0586	CGCCCTTTGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	67	79	+	11.9672	3.22e-05	0.0586	TGCCTGCAAGGCA
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	56	70	+	11.3485	3.22e-05	0.263	GAGCTTGACTCTGCA
FOXH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	77	87	+	12.7885	3.22e-05	1	TACAATCAACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	77	87	+	12.7885	3.22e-05	1	TACAATCAACA
Stat4	WILDTYPE__Lincrna.noflip.NA__chr2:87769389..87769503,+__452.1.0.0	48	61	+	12.6207	3.22e-05	0.218	CTTATAAGAAGGGG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	38	58	+	10.7419	3.22e-05	0.157	CGATCCTCTCGTTTTCATTTC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	82	102	+	10.7419	3.22e-05	0.157	ATGTGCTTCCTGTTTTCTTTA
IRF1	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	89	109	+	10.7419	3.22e-05	0.157	CGATCCTCTCGTTTTCATTTC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	6	26	-	10.7419	3.22e-05	0.157	CGATCCTCTCGTTTTCATTTC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	26	46	-	10.7419	3.22e-05	0.157	ATGTGCTTCCTGTTTTCTTTA
IRF1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	57	77	-	10.7419	3.22e-05	0.157	CGATCCTCTCGTTTTCATTTC
CTCF	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	8	26	+	10.377	3.22e-05	0.0992	TGACCACTGGAGGCCACAC
CTCF	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	89	107	-	10.377	3.22e-05	0.0992	TGACCACTGGAGGCCACAC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	-	11.918	3.22e-05	0.0641	AGCCCCGGCGGCC
ETV1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	12.3818	3.22e-05	0.0928	TCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	12.3818	3.22e-05	0.0928	TCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	12.3818	3.22e-05	0.0928	TCCGGAAGTT
MYBL1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	100	111	+	11.6897	3.22e-05	1	GCCGCTAACGGC
Sox1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	71	85	-	6.56897	3.22e-05	1	CACAATGCGAGTGCA
ELK1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.0426	3.22e-05	0.075	ACCGGAAGGA
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	+	11.2727	3.22e-05	0.217	GTCAGGTGAC
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	15	30	-	0.959184	3.22e-05	0.877	AAGGCCGAAAGTTTAC
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	15	30	-	0.959184	3.22e-05	0.877	AAGGCCGAAAGTTTAC
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	1	10	+	11.899	3.22e-05	0.165	CTATGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	1	10	+	11.899	3.22e-05	0.165	CTATGGGGAA
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	36	45	+	11.899	3.22e-05	0.165	CGAGGGGGAC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	45	54	+	11.899	3.22e-05	0.165	TGATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	45	54	+	11.899	3.22e-05	0.165	TGATGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	69	78	-	11.899	3.22e-05	0.165	CGAGGGGGAC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	101	110	+	11.899	3.22e-05	0.165	CGAGGGGGAC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	103	112	-	11.899	3.22e-05	0.165	TGATGGGGAA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	2	22	-	7.12245	3.22e-05	0.208	TCCCGCCCCCAGGAGAGAGGT
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	2	22	-	7.12245	3.22e-05	0.208	TCCCGCCCCCAGGAGAGAGGT
REST	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	45	65	-	7.12245	3.22e-05	0.208	CGCTGCACCGTGGGCTGGGCC
REST	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	80	100	-	7.12245	3.22e-05	0.208	TCCCGCCCCCAGGAGAGAGGT
REST	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	15	35	+	7.12245	3.22e-05	0.208	TCCCGCCCCCAGGAGAGAGGT
REST	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	50	70	+	7.12245	3.22e-05	0.208	CGCTGCACCGTGGGCTGGGCC
REST	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	93	113	+	7.12245	3.22e-05	0.208	TCCCGCCCCCAGGAGAGAGGT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	83	92	-	12.0674	3.22e-05	0.93	TGTCTGGCAA
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	83	92	-	12.0674	3.22e-05	0.93	TGTCTGGCAA
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	102	111	-	12.0674	3.22e-05	0.93	TGTCTGGCAA
MAX::MYC	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	40	50	-	12.1327	3.22e-05	0.285	GGCCACATGGT
MAX::MYC	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	65	75	+	12.1327	3.22e-05	0.285	GGCCACATGGT
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	93	103	+	12.1327	3.22e-05	0.285	GGCAACGTGGT
ELF1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	65	-	11.0909	3.22e-05	0.0999	GAACCGGAAGCT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	93	104	-	11.0909	3.22e-05	0.0999	TACGCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	93	104	-	11.0909	3.22e-05	0.0999	TACGCGGAAGCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	27	44	-	-10.6447	3.22e-05	0.0346	GAAAAGGGGGAGGGCTGG
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	59	-	9.22449	3.22e-05	0.122	AATTACGTAATG
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	11.9714	3.22e-05	0.205	GCCACGTGAC
MLX	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	11.9714	3.22e-05	0.205	GCCACGTGAC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	+	12.3273	3.22e-05	0.0893	CGCCCTTGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	-	12.3273	3.22e-05	0.0893	CGCCCTTGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	-	12.3273	3.22e-05	0.0893	AGCCCGGCGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	-	12.3273	3.22e-05	0.0893	AGCCCGGCGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	-	12.3273	3.22e-05	0.0893	AGCCCGGCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	-	12.3273	3.22e-05	0.0893	AGCCCGGCGGCA
EGR3	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	11	25	+	8.68966	3.22e-05	0.0347	CCCCGCCCCCGGAGT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	16	30	+	8.68966	3.22e-05	0.0347	TACCGCCTACGTAAA
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	31	45	+	8.68966	3.22e-05	0.0347	CACCTCCCCCGCCGT
EGR3	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	39	53	-	8.68966	3.22e-05	0.0347	CCACGCCTGCGCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	51	65	-	8.68966	3.22e-05	0.0347	TACCGCCTACGTAAA
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	70	84	-	8.68966	3.22e-05	0.0347	CACCTCCCCCGCCGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	6	22	-	6.45455	3.22e-05	0.021	GCGCCCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	6	22	-	6.45455	3.22e-05	0.021	GCGCCCCCGCCCCCGCC
YY2	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	85	95	+	12.4697	3.22e-05	0.269	TGCCGCCATCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	+	11.7931	3.22e-05	0.0554	AGCCCCCGCGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	-	11.7931	3.22e-05	0.0554	GGCCGCGGGGGCT
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	+	12.4143	3.22e-05	0.174	AACAGCTGGT
NHLH1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	43	52	-	12.2931	3.23e-05	0.116	CACAGCTGAG
FOXP1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	55	69	-	12.3521	3.23e-05	0.341	TCTCTGTAAACAAAC
GATA2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	41	54	-	12.7818	3.23e-05	0.951	CCTTTGTTATCTGT
GATA2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	41	54	-	12.7818	3.23e-05	0.951	CCTTTGTTATCTGT
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	41	54	-	12.7818	3.23e-05	0.951	CCTTTGTTATCTGT
GATA2	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	85	98	+	12.7818	3.23e-05	0.951	CCTTTGTTATCTGT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	67	80	-	5.63636	3.23e-05	0.146	CAAAACAAGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	67	80	-	5.63636	3.23e-05	0.146	CAAAACAAGAAGTC
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	67	80	-	5.63636	3.23e-05	0.146	CAAAACAAGAAGTC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	62	82	-	11.0612	3.23e-05	0.0128	GATGGCGGGGGGGTTGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	80	100	+	11.0612	3.23e-05	0.0128	GAGGGACTGCGGGCCGGAGGG
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	12	22	+	12.6346	3.23e-05	0.273	CGAATGAGTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	93	103	-	12.6346	3.23e-05	0.273	CGAATGAGTCA
Lhx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	+	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	+	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	-	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	-	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	+	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	-	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	+	11.0182	3.23e-05	1	TTAATTAA
Lhx4	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	-	11.0182	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	+	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	+	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	-	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	-	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	+	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	-	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	+	10.0789	3.23e-05	1	TTAATTAA
LMX1B	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	-	10.0789	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	+	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	+	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	7	14	-	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	7	14	-	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	+	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	47	54	-	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	+	11.4094	3.23e-05	1	TTAATTAA
LMX1A	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	71	78	-	11.4094	3.23e-05	1	TTAATTAA
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	5	19	-	12.4667	3.23e-05	0.796	CCACCTCAGCAGATC
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	5	19	-	12.4667	3.23e-05	0.796	CCACCTCAGCAGATC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	12	22	+	12.4082	3.23e-05	0.202	CTTCTTGAAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	12	22	+	12.4082	3.23e-05	0.202	CTTCTTGAAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	12	22	+	12.4082	3.23e-05	0.202	CTTCTTGAAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	28	38	-	12.4082	3.23e-05	0.202	CTTCTTGAAAA
NFKB2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	40	52	-	10.3788	3.23e-05	0.231	TGGGAGTACCCCG
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	63	75	+	10.3788	3.23e-05	0.231	TGGGAGTACCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	63	75	+	10.3788	3.23e-05	0.231	TGGGAGTACCCCG
ETV6	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	44	-	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	55	64	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	55	64	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	55	64	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	60	-	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	71	80	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	77	86	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	77	86	+	12.4038	3.23e-05	0.0871	GGCGGAAGTC
CEBPE	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	-	12.2545	3.23e-05	0.721	GTTGCACAAT
NR2C2	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	25	39	+	11.0286	3.23e-05	0.108	CGGGGAGAAAGGGCG
NR2C2	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	76	90	-	11.0286	3.23e-05	0.108	CGGGGAGAAAGGGCG
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	23	33	-	12.4082	3.23e-05	0.134	CACACGTGATC
MYBL2	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	51	65	+	10.9016	3.23e-05	1	GGCCGGTACACCGCC
MYBL2	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	50	64	-	10.9016	3.23e-05	1	GGCCGGTACACCGCC
XBP1	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	31	44	-	11.4038	3.23e-05	0.459	TCAGCCGCGTCACC
XBP1	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	71	84	+	11.4038	3.23e-05	0.459	TCAGCCGCGTCACC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	3	13	+	12.5273	3.23e-05	0.0503	GCGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	3	13	+	12.5273	3.23e-05	0.0503	GCGCTTCCTGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	3	13	+	12.5273	3.23e-05	0.0503	GCGCTTCCTGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	68	78	+	12.5273	3.23e-05	0.0503	GCGCTTCCTGG
IRF9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	21	35	+	0.6	3.23e-05	0.506	TTTGAAACCAAAAGC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	21	35	+	0.6	3.23e-05	0.506	TTTGAAACCAAAAGC
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	21	35	+	0.6	3.23e-05	0.506	TTTGAAACCAAAAGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	34	49	+	11.6	3.23e-05	0.0374	CTCCGCCCCGGCCCTC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	29	44	-	11.6	3.23e-05	0.0374	CTCCGCCCCGGCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	29	44	-	11.6	3.23e-05	0.0374	CTCCGCCCCGGCCCTC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	17	36	-	6.08257	3.23e-05	0.0496	GCCCACAGCACCAACCACAC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	23	33	+	11.7455	3.23e-05	0.014	GCGCAGGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	23	33	+	11.7455	3.23e-05	0.014	GCGCAGGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	23	33	+	11.7455	3.23e-05	0.014	GCGCAGGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	23	33	+	11.7455	3.23e-05	0.014	GCGCAGGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	23	33	+	11.7455	3.23e-05	0.014	GCGCAGGTGCG
NRF1	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	95	105	+	11.7455	3.23e-05	0.014	GCGGCTGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	96	106	+	11.7455	3.23e-05	0.014	GCGGCTGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	96	106	+	11.7455	3.23e-05	0.014	GCGGCTGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	96	106	+	11.7455	3.23e-05	0.014	GCGGCTGTGCG
NRF1	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	10	20	-	11.7455	3.23e-05	0.014	GCGGCTGTGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	92	-	11.7455	3.23e-05	0.014	GCGCAGGTGCG
ZIC4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	7	21	+	11.7273	3.23e-05	0.101	GGCCGCCCGCCGACA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	49	63	+	11.7273	3.23e-05	0.101	TCCTCCCTGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	49	63	+	11.7273	3.23e-05	0.101	TCCTCCCTGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	49	63	+	11.7273	3.23e-05	0.101	TCCTCCCTGCCGCGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	94	108	-	11.7273	3.23e-05	0.101	GGCCGCCCGCCGACA
RFX4	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	+	11.4091	3.23e-05	0.197	GGTGGCCCTGGAAACG
RFX4	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	-	11.4091	3.23e-05	0.197	GGTGGCCCTGGAAACG
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	46	59	-	10.9508	3.23e-05	0.365	TTCCCCTTGGGGAT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	46	59	-	10.9508	3.23e-05	0.365	TTCCCCTTGGGGAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	26	39	+	12.6538	3.24e-05	0.185	TCATGGTGACTCAG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	58	71	-	12.6538	3.24e-05	0.185	TTTAAATGACTCAG
NFATC3	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	24	33	-	11.5354	3.24e-05	0.908	TCTTTCCATT
NFATC3	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	73	82	+	11.5354	3.24e-05	0.908	TCTTTCCATT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	62	79	-	-10.6579	3.24e-05	0.0346	GGAGGGGAGGAAGAGGTG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	62	79	-	-10.6579	3.24e-05	0.0346	GGAGGGGAGGAAGAGGTG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	80	97	-	-10.6579	3.24e-05	0.0346	GGGGGGAAAAAAGGCAAG
SP1	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	4	14	+	12.4231	3.24e-05	0.0104	ACTCCACCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	1	11	-	12.4231	3.24e-05	0.0104	CCTCCACCCCT
SP1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	16	26	-	12.4231	3.24e-05	0.0104	CCTCCACCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	28	38	-	12.4231	3.24e-05	0.0104	CCTCCACCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	55	65	-	12.4231	3.24e-05	0.0104	CCTCCACCCCT
SP1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	89	99	+	12.4231	3.24e-05	0.0104	CCTCCACCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	104	114	+	12.4231	3.24e-05	0.0104	CCTCCACCCCT
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	96	+	6.30303	3.24e-05	0.379	GCCCCCCCGCGACT
FOXH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.0.0	17	27	-	12.7692	3.24e-05	1	GCCAATCCACT
ESR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	52	68	-	2.80303	3.24e-05	0.463	TGGGTCGCCGCGACTTG
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	32	41	-	12.1939	3.24e-05	0.201	TGGAAATTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	32	41	-	12.1939	3.24e-05	0.201	TGGAAATTCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	48	57	-	12.1939	3.24e-05	0.201	TGGAAATTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	60	69	-	12.1939	3.24e-05	0.201	TGGAAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	60	69	-	12.1939	3.24e-05	0.201	TGGAAATTCC
PAX5	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	14	32	+	11.8226	3.24e-05	0.137	AGGGGCACCCGGGCATCGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	42	60	+	11.8226	3.24e-05	0.137	CGGGGCGGCGAGGCGAGGG
Zfx	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	51	64	-	12.3333	3.24e-05	0.0435	ACTGGCCCGGCCTC
FIGLA	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	25	34	-	12.4138	3.24e-05	0.859	ATCACCTGGT
HINFP	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	46	57	+	12.0909	3.24e-05	0.109	GAGCGTGCGCGG
HINFP	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	63	74	+	12.0909	3.24e-05	0.109	CGGCGTCCTCGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	94	105	-	12.0909	3.24e-05	0.109	GCGGGTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	94	105	-	12.0909	3.24e-05	0.109	GCGGGTCCGCTC
E2F4	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	25	35	+	12.5862	3.24e-05	0.0451	CCGCGGGAGCC
E2F4	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	18	28	-	12.5862	3.24e-05	0.0451	CGGCGCGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	36	46	+	12.5862	3.24e-05	0.0451	CCGCGGGAGCC
E2F4	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	69	79	-	12.5862	3.24e-05	0.0451	CCGCGGGAGCC
E2F4	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	81	91	+	12.5862	3.24e-05	0.0451	CCGCGGGAGCC
E2F4	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	87	97	+	12.5862	3.24e-05	0.0451	CGGCGCGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	80	90	-	12.5862	3.24e-05	0.0451	CCGCGGGAGCC
E2F4	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	99	109	+	12.5862	3.24e-05	0.0451	CGGCGCGAGGG
SP4	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	16	32	+	6.43636	3.24e-05	0.021	CACTCTCCGCCCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	17	33	+	6.43636	3.24e-05	0.021	GCCTCCCCGCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	17	33	+	6.43636	3.24e-05	0.021	GCCTCCCCGCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	34	50	+	6.43636	3.24e-05	0.021	GCCTCCCCGCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	34	50	+	6.43636	3.24e-05	0.021	GCCTCCCCGCCCCCTCG
MIXL1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	10.2917	3.24e-05	1	GCCAATTAGA
MIXL1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	10.2917	3.24e-05	1	GCCAATTAGA
ZBTB7A	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	52	63	-	12.1714	3.24e-05	0.217	TCCGCCCACAGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	84	95	-	12.1714	3.24e-05	0.217	TCCGCCCACAGA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	84	95	-	12.1714	3.24e-05	0.217	TCCGCCCACAGA
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	52	63	+	12.1714	3.24e-05	0.217	TCCGCCCACAGA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	18	32	+	11.3333	3.24e-05	0.263	CGGCGTGAGTCTGCG
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	18	32	+	11.3333	3.24e-05	0.263	CGGCGTGAGTCTGCG
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	18	32	+	11.3333	3.24e-05	0.263	CGGCGTGAGTCTGCG
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	18	32	+	11.3333	3.24e-05	0.263	CGGCGTGAGTCTGCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	25	39	+	8.67241	3.24e-05	0.0347	TCCCGCCCACCCCGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	52	66	+	8.67241	3.24e-05	0.0347	TCCCGCCCACCCCGC
ELF3	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	40	52	-	10.2759	3.24e-05	0.134	ATCCCGGATGTGG
ELF3	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	63	75	+	10.2759	3.24e-05	0.134	ATCCCGGATGTGG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	17	30	+	11.7692	3.24e-05	0.016	TCACTGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	17	30	+	11.7692	3.24e-05	0.016	TCACTGCCCCCACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	25	38	-	11.7692	3.24e-05	0.016	ACGCCACCCCCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	25	38	-	11.7692	3.24e-05	0.016	ACGCCACCCCCATC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	30	43	-	11.7692	3.24e-05	0.016	GCTCCACCCCTGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	+	11.7759	3.24e-05	0.0554	GGCCGCCGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	-	11.7759	3.24e-05	0.0554	AGCCGCCGGGGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	25	44	-	6.07339	3.24e-05	0.0496	CCTCCCGCCAACCCCTCTCC
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	47	63	+	0.666667	3.24e-05	0.785	AGGTCAACTATGGGCCT
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	67	82	+	-5.5	3.24e-05	0.322	GGACCGCCCACTTCCC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	-	12.7091	3.24e-05	0.165	AATGACTCACA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	41	54	+	7.80612	3.24e-05	0.0655	GAGGGGGTGAGGGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	19	33	-	10.2459	3.24e-05	0.0485	AGCCACTCCCAACAT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	19	33	-	10.2459	3.24e-05	0.0485	AGCCACTCCCAACAT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	8	18	-	12.5818	3.25e-05	0.0506	CGCCTCAGGGC
TFAP2A	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	+	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	55	+	12.5818	3.25e-05	0.0506	CGCCTCAGGGC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	+	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	+	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	+	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
TFAP2A	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	-	12.5818	3.25e-05	0.0506	CGCCGCCGGCT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	15	29	-	9.98571	3.25e-05	0.101	CACTCCCTGTGGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	15	29	-	9.98571	3.25e-05	0.101	CACTCCCTGTGGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	15	29	-	9.98571	3.25e-05	0.101	CACTCCCTGTGGGGC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	50	59	-	12.6531	3.25e-05	0.015	CCCACGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	68	77	-	12.6531	3.25e-05	0.015	CCCACGCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	56	65	+	12.6531	3.25e-05	0.015	CCCACGCCCT
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	3	13	+	12.7347	3.25e-05	0.172	CTATGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	3	13	+	12.7347	3.25e-05	0.172	CTATGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	9	19	+	12.7347	3.25e-05	0.172	GGCTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	9	19	+	12.7347	3.25e-05	0.172	GGCTGACTCAG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	38	50	-	4.97959	3.25e-05	0.233	TGGGATTTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	37	47	+	12.4038	3.25e-05	0.0104	GTCCCGCCTCG
POU3F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	33	41	+	12.0102	3.25e-05	1	AATGCAAAT
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	36	44	-	12.0102	3.25e-05	1	AATGCAAAT
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	52	66	+	11.2424	3.25e-05	0.279	TAACTTCCTGTTTCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	50	61	+	12.1613	3.25e-05	0.281	AGGACCACCACC
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	54	65	-	12.1613	3.25e-05	0.281	AGGACCACCACC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	66	77	-	12.1613	3.25e-05	0.281	GCCACCCCCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	66	77	-	12.1613	3.25e-05	0.281	GCCACCCCCGCC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	71	80	-	12.5577	3.25e-05	0.439	TGACCACAAA
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	71	80	-	12.5577	3.25e-05	0.439	TGACCACAAA
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	71	80	-	12.5577	3.25e-05	0.439	TGACCACAAA
Sox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	43	-	-9.67143	3.25e-05	1	AACAATATCATTGCA
Sox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	43	-	-9.67143	3.25e-05	1	AACAATATCATTGCA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	67	80	-	10.4839	3.25e-05	0.664	CAGAAAAAGAAACT
BCL6B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	12	28	+	-12.5143	3.25e-05	0.94	TCCTCTCCAGGACTTCC
BCL6B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	12	28	+	-12.5143	3.25e-05	0.94	TCCTCTCCAGGACTTCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	-	12.3455	3.25e-05	0.0548	CGCCCGGGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	-	12.3455	3.25e-05	0.0548	CGCCCGGGGCCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	+	12.3455	3.25e-05	0.0548	CGCCCGGGGCCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	37	48	-	12.3455	3.25e-05	0.0548	TCCCCCAAGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	64	75	+	12.3455	3.25e-05	0.0548	CACCCCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	64	75	+	12.3455	3.25e-05	0.0548	CACCCCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	64	75	+	12.3455	3.25e-05	0.0548	CACCCCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	64	75	+	12.3455	3.25e-05	0.0548	CACCCCCAGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	67	78	+	12.3455	3.25e-05	0.0548	TCCCCCAAGCCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	-	12.3455	3.25e-05	0.0548	CGCCCGGGGCCG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	25	38	+	9.45714	3.25e-05	0.147	CAATGATGTCACTG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	25	38	+	9.45714	3.25e-05	0.147	CAATGATGTCACTG
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	25	38	+	9.45714	3.25e-05	0.147	CAATGATGTCACTG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	25	38	+	9.45714	3.25e-05	0.147	CAATGATGTCACTG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	25	38	+	9.45714	3.25e-05	0.147	CAATGATGTCACTG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	12	25	-	11.3429	3.25e-05	0.214	CGTCCACGTGACCC
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	12	25	-	11.3429	3.25e-05	0.214	CGTCCACGTGACCC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	12	25	-	11.3429	3.25e-05	0.214	CGTCCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	12	25	-	11.3429	3.25e-05	0.214	CGTCCACGTGACCC
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	24	34	+	12.6531	3.25e-05	0.788	ATTGCAAAAGA
Gata4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	27	37	-	12.8448	3.25e-05	1	TGTTATCTCTC
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	42	52	-	12.5577	3.25e-05	0.273	AAGCTGACTCA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	75	85	+	12.5577	3.25e-05	0.273	AAGCTGACTCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	+	11.9508	3.25e-05	0.0586	CGCCCGGGAGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	+	11.9508	3.25e-05	0.0586	CGCCCGGGAGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	+	11.9508	3.25e-05	0.0586	CGCCCGGGAGGGA
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	33	46	-	8.51064	3.25e-05	0.0959	CGCGCCCTGCCGCG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	67	80	+	8.51064	3.25e-05	0.0959	CGCGCCCTGCCGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	-	12.2347	3.25e-05	0.0857	TGCCCCAGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	-	12.2347	3.25e-05	0.0857	TGCCCCAGGGGC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	26	37	-	12.2347	3.25e-05	0.0857	CGCCCTGAGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	+	12.2347	3.25e-05	0.0857	TGCCGGCAGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	+	12.2347	3.25e-05	0.0857	TGCCGGCAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	+	12.2347	3.25e-05	0.0857	TGCCGGCAGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	+	12.2347	3.25e-05	0.0857	TGCCGGCAGGCA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	92	103	+	12.2347	3.25e-05	0.0857	CGCCCTGAGCCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	95	+	11.7727	3.25e-05	0.0896	GTCACGCGAGGCTGG
NR2C2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	40	54	+	11.0143	3.25e-05	0.108	AAAGGGCGGAGGGGG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	61	75	-	11.0143	3.25e-05	0.108	AAAGGGCGGAGGGGG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	13	27	-	12.338	3.26e-05	0.341	AAAAAGAAAAGAAAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	13	27	-	12.338	3.26e-05	0.341	AAAAAGAAAAGAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	40	54	-	12.338	3.26e-05	0.341	AAAAAGAAAAGAAAA
ISL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	76	83	+	11.3717	3.26e-05	1	GCACTTAG
ISL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	76	83	+	11.3717	3.26e-05	1	GCACTTAG
ISL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	76	83	+	11.3717	3.26e-05	1	GCACTTAG
TBX5	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	56	63	-	11.8276	3.26e-05	0.762	AGGTGTTA
TBX4	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	56	63	-	12.3061	3.26e-05	0.811	AGGTGTTA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	21	28	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	21	28	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	34	41	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	39	46	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	47	54	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	47	54	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	49	56	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	49	56	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	60	67	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	65	72	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	78	85	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	79	86	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	104	111	-	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	104	111	-	11.9388	3.26e-05	0.606	AAGTGTGA
OTX1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	58	65	+	12	3.26e-05	1	CTAATCCG
OTX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	98	105	-	12	3.26e-05	1	CTAATCCG
OTX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	98	105	-	12	3.26e-05	1	CTAATCCG
Pitx1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	5	12	-	11.7636	3.26e-05	1	CTAATCCC
Pitx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	52	59	-	11.7636	3.26e-05	1	CTAATCCC
Pitx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	52	59	-	11.7636	3.26e-05	1	CTAATCCC
Pitx1	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	81	88	-	11.7636	3.26e-05	1	CTAATCCC
Pitx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	100	107	-	11.7636	3.26e-05	1	CTAATCCC
Pitx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	100	107	-	11.7636	3.26e-05	1	CTAATCCC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	18	25	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	18	25	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	18	25	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	27	34	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	27	34	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	28	35	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	28	35	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	33	40	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	51	58	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	55	62	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	55	62	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	55	62	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	55	62	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	55	62	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	61	68	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	66	73	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	74	81	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	89	96	-	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	90	97	-	13.0492	3.26e-05	0.377	ATGACGTA
TEAD3	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	12	19	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	18	25	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	30	37	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	35	42	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	45	52	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	52	59	+	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	8	15	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	40	47	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	56	63	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	59	66	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	88	95	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	88	95	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	88	95	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	88	95	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	90	97	-	12.9796	3.26e-05	0.775	GCATTCCA
TEAD3	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	96	103	-	12.9796	3.26e-05	0.775	GCATTCCA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	1	8	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	13	20	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	27	34	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	30	37	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	37	44	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	37	44	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	37	44	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	37	44	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	59	66	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	69	76	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	69	76	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	74	81	+	11.9388	3.26e-05	0.606	AAGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	74	81	+	11.9388	3.26e-05	0.606	AAGTGTGA
Atf1	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	18	25	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	19	26	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	29	36	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	29	36	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	29	36	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	29	36	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	42	49	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	53	60	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	61	68	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	75	82	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	81	88	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	87	94	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	87	94	+	13.0492	3.26e-05	0.377	ATGACGTA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	87	94	+	13.0492	3.26e-05	0.377	ATGACGTA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	74	87	-	7.72449	3.26e-05	0.365	TGGCACGTCGCCGG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	74	87	-	7.72449	3.26e-05	0.365	TGGCACGTCGCCGG
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	65	81	-	0.651515	3.26e-05	0.785	AGGCCACTCCCAGGGCA
Rarb(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	34	50	+	0.651515	3.26e-05	0.785	AGGCCACTCCCAGGGCA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	-	12.4364	3.26e-05	0.0665	AGCCTCGGGCC
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	11.7692	3.26e-05	1	GGCATATGTT
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	11.7692	3.26e-05	1	GGCATATGTT
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	10	21	-	12.2623	3.26e-05	0.41	ATCGGCGCCAAG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	10	21	-	12.2623	3.26e-05	0.41	ATCGGCGCCAAG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	36	47	-	12.2623	3.26e-05	0.41	ATCGGCGCCAAG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	36	47	-	12.2623	3.26e-05	0.41	ATCGGCGCCAAG
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	30	46	+	6.41818	3.26e-05	0.0211	CAGGCTCCGCCTCTGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	11	27	-	6.41818	3.26e-05	0.0211	CAGGCTCCGCCTCTGCC
YY1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	6	17	-	12.1731	3.26e-05	0.188	CATGATGGCTGC
YY1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	98	109	+	12.1731	3.26e-05	0.188	CATGATGGCTGC
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	21	30	-	12.7869	3.26e-05	0.248	GATTACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	21	30	-	12.7869	3.26e-05	0.248	GATTACGTCA
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	86	102	-	5.59016	3.26e-05	0.563	AGGACGAGCACGGGTCA
SPDEF	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	10	20	+	11.9091	3.26e-05	0.225	TACCGGAAGTG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	27	37	+	11.9091	3.26e-05	0.225	TACCGGAAGTG
SPDEF	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	49	59	+	11.9091	3.26e-05	0.225	TACCGGAAGTG
TBX21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	64	73	+	12.4	3.26e-05	1	TAGGTGTGAG
TBX21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	64	73	+	12.4	3.26e-05	1	TAGGTGTGAG
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	64	73	+	12.4	3.26e-05	1	TAGGTGTGAG
TBX21	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	64	73	+	12.4	3.26e-05	1	TAGGTGTGAG
TBX21	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	42	51	-	12.4	3.26e-05	1	TAGGTGTGAG
SPIC	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	77	90	-	12.0423	3.26e-05	0.214	GGAAAGGGGAGGAA
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	17	25	-	11.4545	3.26e-05	0.302	GTGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	17	25	-	11.4545	3.26e-05	0.302	GTGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	17	25	-	11.4545	3.26e-05	0.302	GTGCCCAGT
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	9	19	+	12.4468	3.26e-05	0.175	GGTGAGTCACT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	9	19	+	12.4468	3.26e-05	0.175	GGTGAGTCACT
JUND	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	96	106	-	12.4468	3.26e-05	0.175	GGTGAGTCACT
GSC	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	99	108	-	12.0377	3.26e-05	1	CCTAATCCCG
GSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	99	108	-	12.0377	3.26e-05	1	CCTAATCCCG
NR1H2::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	48	64	+	-2.50562	3.26e-05	0.939	GAAGGTCACAGGTCTTG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	48	64	+	-2.50562	3.26e-05	0.939	GAAGGTCACAGGTCTTG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	16	25	-	11.8687	3.26e-05	0.165	CGAGGGGGGG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	31	40	+	11.8687	3.26e-05	0.165	CGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	31	40	+	11.8687	3.26e-05	0.165	CGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	55	64	-	11.8687	3.26e-05	0.165	CGAGGGGGGG
ETV3	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	12.2254	3.26e-05	0.104	ACCGGAAACG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	12.2254	3.26e-05	0.104	ACCGGAAACG
RARA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	21	38	+	-5.86364	3.26e-05	1	GAGGCAATGATGTCACTG
RARA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	21	38	+	-5.86364	3.26e-05	1	GAGGCAATGATGTCACTG
RARA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	21	38	+	-5.86364	3.26e-05	1	GAGGCAATGATGTCACTG
RARA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	21	38	+	-5.86364	3.26e-05	1	GAGGCAATGATGTCACTG
RARA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	21	38	+	-5.86364	3.26e-05	1	GAGGCAATGATGTCACTG
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	60	-	11.5139	3.26e-05	1	GTCATTAAAA
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	66	+	11.5139	3.26e-05	1	GCAATTAAAG
DUXA	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	95	107	+	12.4032	3.26e-05	1	ATGATGCAATCAT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	49	+	11.8852	3.26e-05	0.0641	CGCCCGCAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	49	+	11.8852	3.26e-05	0.0641	CGCCCGCAGGGGG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	71	91	+	10.7097	3.26e-05	0.158	CCTCACTCTCACTCTCTCTCC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	76	96	-	10.7097	3.26e-05	0.158	AGCTCCTTCTACTTTCTGCTT
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
FLI1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.3617	3.26e-05	0.0896	CCCGGAAGTG
GATA2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	37	50	-	12.7636	3.26e-05	0.951	ATTTTCTTATCTGG
GATA2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	65	78	+	12.7636	3.26e-05	0.951	ATTTTCTTATCTGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	17	37	-	11.0408	3.26e-05	0.0129	GGGAGGGGGGCAGGAGGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	47	67	-	11.0408	3.26e-05	0.0129	GGAGGGAGGGGGAGGAGGTGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	58	78	-	11.0408	3.26e-05	0.0129	GGAAGAGGGGAGGCCGAGAGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	58	78	-	11.0408	3.26e-05	0.0129	GGAAGAGGGGAGGCCGAGAGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	68	88	-	11.0408	3.26e-05	0.0129	GGTGCAGGTGGCCGAAGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	69	89	-	11.0408	3.26e-05	0.0129	TAAAAAAGAGGAGGAGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	21	41	+	11.0408	3.26e-05	0.0129	CAGGGAGCTGGAGGGAGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	21	41	+	11.0408	3.26e-05	0.0129	CAGGGAGCTGGAGGGAGGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	27	47	+	11.0408	3.26e-05	0.0129	GGTGCAGGTGGCCGAAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	27	47	+	11.0408	3.26e-05	0.0129	GGTGCAGGTGGCCGAAGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	48	68	+	11.0408	3.26e-05	0.0129	GGAGGGAGGGGGAGGAGGTGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	54	74	+	11.0408	3.26e-05	0.0129	GGAAGAGGGGAGGCCGAGAGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	54	74	+	11.0408	3.26e-05	0.0129	GGAAGAGGGGAGGCCGAGAGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	21	35	-	9.97143	3.26e-05	0.101	GCCGACCTGCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	21	35	-	9.97143	3.26e-05	0.101	GCCGACCTGCCGCGC
NRL	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	4	14	+	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	95	105	+	11.4615	3.27e-05	0.776	AAACTGCTGAG
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
NRL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	101	111	-	11.4615	3.27e-05	0.776	ATTTTGCTGAT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	52	66	+	11.7091	3.27e-05	0.101	GCACCCACGCGGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	38	52	-	11.7091	3.27e-05	0.101	CCCCGCCCGCCGTGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	38	52	-	11.7091	3.27e-05	0.101	CCCCGCCCGCCGTGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	38	52	-	11.7091	3.27e-05	0.101	CCCCGCCCGCCGTGG
SP3	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	33	43	+	12.0976	3.27e-05	0.0169	ACCCCGCCTAC
SP3	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	60	70	+	12.0976	3.27e-05	0.0169	ACCCCGCCTAC
CTCF	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	21	39	-	10.3443	3.27e-05	0.0999	CCGGCAGGAGGGGGAGGGG
CTCF	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	90	108	+	10.3443	3.27e-05	0.0999	CGGCCTGCGGGTGTAGGCG
ESR2	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	30	44	+	11.9808	3.27e-05	0.426	GAGTCAGGCTGACCG
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	85	99	-	11.9808	3.27e-05	0.426	GGGTCACTGTGAGCA
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	85	99	-	11.9808	3.27e-05	0.426	GGGTCACTGTGAGCA
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	85	99	-	11.9808	3.27e-05	0.426	GGGTCACTGTGAGCA
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	85	99	-	11.9808	3.27e-05	0.426	GGGTCACTGTGAGCA
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	85	99	-	11.9808	3.27e-05	0.426	GGGTCACTGTGAGCA
RORA	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	28	37	-	12.9326	3.27e-05	0.869	AAAGAGGTCA
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	44	56	-	12.1311	3.27e-05	0.359	CTGTCTAGCTGCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	46	63	+	-10.6842	3.27e-05	0.0346	GAAGCGGAAGCAGGAAGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	84	101	-	-10.6842	3.27e-05	0.0346	GGAGGGAAAGGGGGAGGA
EGR4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	10	25	-	11.5818	3.27e-05	0.0374	CCCCGCCCCTGCAGAG
EGR4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	90	105	+	11.5818	3.27e-05	0.0374	CCCCGCCCCTGCAGAG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	89	104	-	11.5818	3.27e-05	0.0374	TACCGCCGCCGCGCTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	93	103	-	12.1636	3.27e-05	0.125	ACGCGGAAGCC
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	93	103	-	12.1636	3.27e-05	0.125	ACGCGGAAGCC
BHLHE22	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	12.9242	3.27e-05	1	GGCATATGTT
BHLHE22	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	12.9242	3.27e-05	1	GGCATATGTT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	57	71	+	10.2295	3.27e-05	0.0485	AGCCCCGCCCCCGTT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	57	71	+	10.2295	3.27e-05	0.0485	AGCCCCGCCCCCGTT
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	-	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	-	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	11.9388	3.27e-05	0.107	CGCACGTGAT
TFE3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	-	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	+	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	+	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	+	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	+	11.9388	3.27e-05	0.107	ATCACATGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	11.9388	3.27e-05	0.107	GTCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	11.9388	3.27e-05	0.107	CGCACGTGAT
TFE3	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	11.9388	3.27e-05	0.107	GTCACGTGGC
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	78	90	-	12.5918	3.27e-05	0.367	CGAAGGTCAGTGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	78	90	-	12.5918	3.27e-05	0.367	CGAAGGTCAGTGG
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	78	90	-	12.5918	3.27e-05	0.367	CGAAGGTCAGTGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	78	90	-	12.5918	3.27e-05	0.367	CGAAGGTCAGTGG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	40	51	-	12.3091	3.27e-05	0.0893	AGCCCCCAGGCC
RAX	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	11.5254	3.27e-05	1	GCCAATTAGG
Spz1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	89	99	-	12.2364	3.27e-05	0.743	AGGGTTAGGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	18	32	+	11.8966	3.27e-05	0.00923	CGCCCTCCCCCGCAT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	54	68	+	11.8966	3.27e-05	0.00923	CGCCCTCCCCCGCAT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	54	68	+	11.8966	3.27e-05	0.00923	CGCCCTCCCCCGCAT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	65	79	+	11.8966	3.27e-05	0.00923	GCCCTGCCCTCCAGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	17	31	-	11.8966	3.27e-05	0.00923	CCCCCTCCCTTTTGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	38	52	-	11.8966	3.27e-05	0.00923	GCCCTGCCCTCCAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	53	67	-	11.8966	3.27e-05	0.00923	CGCCCTCCCCCGCAT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	53	67	-	11.8966	3.27e-05	0.00923	CGCCCTCCCCCGCAT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	75	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	75	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	75	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	75	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	110	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	110	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	110	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	110	-	11.8966	3.27e-05	0.00923	CGCCCGCCCCAGGCA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	47	65	-	11.8065	3.27e-05	0.137	GGAAGTAGCAAGGCGGGCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	47	65	-	11.8065	3.27e-05	0.137	GGAAGTAGCAAGGCGGGCC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	67	85	-	11.8065	3.27e-05	0.137	GGAAGTAGCAAGGCGGGCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	67	85	-	11.8065	3.27e-05	0.137	GGAAGTAGCAAGGCGGGCC
POU3F3	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	11	23	-	12.04	3.27e-05	1	AGTATGCAAAATA
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	41	50	+	13.2909	3.27e-05	0.364	CCATGTGCGC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	41	50	+	13.2909	3.27e-05	0.364	CCATGTGCGC
Myc	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	86	95	+	13.2909	3.27e-05	0.364	CCATGTGCGC
Myc	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	20	29	-	13.2909	3.27e-05	0.364	CCATGTGCGC
TBP	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	51	65	+	11.9306	3.27e-05	0.445	CCATAAATGGGGCCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	19	38	-	6.04587	3.27e-05	0.0499	CCCCACAGCGCCCGCCGCGC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	19	29	+	12.8909	3.27e-05	0.149	TTATGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	19	29	+	12.8909	3.27e-05	0.149	TTATGACTCAT
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	16	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	16	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	25	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	27	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	32	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	53	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	58	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	58	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	58	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	58	+	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	25	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	39	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	71	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	71	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	75	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	83	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	83	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	83	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	83	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	92	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
ETS1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	108	-	12.5517	3.27e-05	0.0819	ACAGGAAATG
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	1	15	+	11.2273	3.27e-05	0.279	AAAGTTTCACTTCAC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	65	79	-	11.2273	3.27e-05	0.279	GCGCTTCCGGTTTCC
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	100	114	-	11.2273	3.27e-05	0.279	AAAGTTTCACTTCAC
BATF3	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	18	31	-	3.77273	3.27e-05	0.145	CGATGACCTCAGCG
BATF3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	54	67	-	3.77273	3.27e-05	0.145	CGATGACCTCAGCG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	10	23	+	12.6346	3.27e-05	0.185	CACGAATGAGTCAG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	92	105	-	12.6346	3.27e-05	0.185	CACGAATGAGTCAG
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	2	12	+	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	6	16	-	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	11	21	-	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	11	21	-	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	22	32	-	12.6531	3.27e-05	0.263	TTTCCCCAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	31	41	-	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	50	60	+	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	50	60	+	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	48	58	-	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	74	84	+	12.6531	3.27e-05	0.263	GGTTCCTGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	83	93	+	12.6531	3.27e-05	0.263	TTTCCCCAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	99	109	+	12.6531	3.27e-05	0.263	GGTTCCTGGAA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	33	46	+	11.75	3.28e-05	0.0161	GGACCGCCCACGTC
EGR1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	29	42	-	11.75	3.28e-05	0.0161	CCTCTGCCTCCGCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	47	60	+	11.75	3.28e-05	0.0161	CGTCCTCCTCCTCA
EGR1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	43	56	-	11.75	3.28e-05	0.0161	GTCCCGCCCCTGGC
EGR1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	72	+	11.75	3.28e-05	0.0161	GTCCCGCCCCTGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	73	86	+	11.75	3.28e-05	0.0161	CCTCTGCCTCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	73	86	+	11.75	3.28e-05	0.0161	CCTCTGCCTCCGCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	99	112	-	11.75	3.28e-05	0.0161	CGTCCTCCTCCTCA
CREB3	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	9	22	-	11.3286	3.28e-05	0.214	TTTAAACGTCATCG
CREB3	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	57	70	-	11.3286	3.28e-05	0.214	TTTAAACGTCATCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	45	58	+	11.3286	3.28e-05	0.214	TTTAAACGTCATCG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	45	58	+	11.3286	3.28e-05	0.214	TTTAAACGTCATCG
CREB3	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	93	106	+	11.3286	3.28e-05	0.214	TTTAAACGTCATCG
NHLH1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	+	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	+	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	+	12.2759	3.28e-05	0.116	CGCAGGTGCC
NHLH1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	-	12.2759	3.28e-05	0.116	CGCAGGTGCC
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	66	80	-	0.545455	3.28e-05	0.506	GGAAAAACCGAAAGC
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	14	28	-	12.2979	3.28e-05	0.311	TAGGATGATGTCAAC
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	87	101	+	12.2979	3.28e-05	0.311	TAGGATGATGTCAAC
Stat6	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	97	111	+	12.5	3.28e-05	0.594	TGGTTCTACAGAAGG
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	4	18	-	12.5	3.28e-05	0.594	TGGTTCTACAGAAGG
Stat6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	4	18	-	12.5	3.28e-05	0.594	TGGTTCTACAGAAGG
LEF1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	35	49	+	10.4677	3.28e-05	1	AGGGATCAAAGAAGC
PAX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	22	38	-	7.98182	3.28e-05	0.51	GGTTCCGCCTGACAGCC
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	22	38	-	7.98182	3.28e-05	0.51	GGTTCCGCCTGACAGCC
SOX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	27	35	-	11.6098	3.28e-05	1	CCATTGATC
SOX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.0.0	27	35	-	11.6098	3.28e-05	1	CCATTGATC
SOX9	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	33	41	-	11.6098	3.28e-05	1	CCATTGATC
SOX9	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	56	64	+	11.6098	3.28e-05	1	CCATTGATC
GRHL1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	65	76	+	12.0172	3.28e-05	1	AAAACATGTTTT
GRHL1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	65	76	-	12.0172	3.28e-05	1	AAAACATGTTTT
TP73	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	36	53	-	10.4038	3.28e-05	0.649	GGCTTGCCTGGGCTTGTT
SP8	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	18	29	+	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	8	19	-	12.0395	3.28e-05	0.0248	ACCCCACCCCCA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	9	20	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	9	20	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	9	20	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	9	20	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	31	42	+	12.0395	3.28e-05	0.0248	ACCACGCCTCTT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	31	42	+	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	31	42	+	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	23	34	-	12.0395	3.28e-05	0.0248	CACACGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	23	34	-	12.0395	3.28e-05	0.0248	CACACGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	54	+	12.0395	3.28e-05	0.0248	ACCCCACCCCCA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	54	+	12.0395	3.28e-05	0.0248	ACCCCACCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	71	+	12.0395	3.28e-05	0.0248	ACCCCACCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	51	62	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	51	62	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	51	62	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	51	62	-	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	80	+	12.0395	3.28e-05	0.0248	ACCCCACCCCCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	73	84	+	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	77	88	+	12.0395	3.28e-05	0.0248	ACCACTCCTCCT
SP8	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	81	92	+	12.0395	3.28e-05	0.0248	CACACGCCTCCC
SP8	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	73	84	-	12.0395	3.28e-05	0.0248	ACCACGCCTCTT
SP8	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	95	106	+	12.0395	3.28e-05	0.0248	CCCCCGCCTCCT
Myog	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	40	50	-	13.0816	3.28e-05	0.131	CGCAGCTGCCC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	+	11.1818	3.28e-05	0.22	CTCACGCGAC
PRDM1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	15	29	+	11.7636	3.28e-05	0.308	GGGCAGAGAAAGGGG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	86	100	-	11.7636	3.28e-05	0.308	GGGCAGAGAAAGGGG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	27	+	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	27	+	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	27	+	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	12	22	-	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	12	22	-	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	12	22	-	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	12	22	-	11.8793	3.28e-05	0.014	GGCCCACCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	36	46	-	11.8793	3.28e-05	0.014	GTCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	53	63	+	11.8793	3.28e-05	0.014	GTCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	52	62	-	11.8793	3.28e-05	0.014	GTCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	69	79	+	11.8793	3.28e-05	0.014	GTCCCTCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	88	98	-	11.8793	3.28e-05	0.014	GGCCCACCCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	25	42	+	-10.6974	3.28e-05	0.0346	TAGGGGAGGGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	25	42	+	-10.6974	3.28e-05	0.0346	TAGGGGAGGGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	25	42	+	-10.6974	3.28e-05	0.0346	TAGGGGAGGGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	67	84	-	-10.6974	3.28e-05	0.0346	GAAAGACGGGAACGTAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	89	106	-	-10.6974	3.28e-05	0.0346	GAAAGGAAGAGAGGTACA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	89	106	-	-10.6974	3.28e-05	0.0346	GAAAGGAAGAGAGGTACA
KLF13	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	29	46	+	7.06897	3.28e-05	0.21	GGGACAGGCCCCTGTGCC
Phox2b	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	69	79	+	12.2553	3.28e-05	1	TAATGTAATTT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	5	17	-	4.93878	3.28e-05	0.233	AGGGGGGGCCCCG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	58	70	-	4.93878	3.28e-05	0.233	AGGGAAACTCCCC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	67	79	-	4.93878	3.28e-05	0.233	AGGGGGGGCCCCG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	40	52	+	4.93878	3.28e-05	0.233	TGCGGAATCCCCA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	40	52	+	4.93878	3.28e-05	0.233	TGCGGAATCCCCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	+	11.7414	3.28e-05	0.0554	GGCCGCGGGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	+	11.7414	3.28e-05	0.0554	GGCCCTCGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	-	11.7414	3.28e-05	0.0554	GGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	-	11.7414	3.28e-05	0.0554	GGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	-	11.7414	3.28e-05	0.0554	GGCCGTGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	-	11.7414	3.28e-05	0.0554	GGCCGTGGGGGCG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	-	11.7414	3.28e-05	0.0554	GGCCCTCGCGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	+	11.7414	3.28e-05	0.0554	GGCCCTCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	-	11.7414	3.28e-05	0.0554	GGCCGCGGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	-	11.7414	3.28e-05	0.0554	GGCCGCGGGGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	+	11.7414	3.28e-05	0.0554	TCCCCTGACGGGA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	-	11.7414	3.28e-05	0.0554	GGCCCTCGCGGCG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	13	23	-	12.7414	3.28e-05	0.0488	GAGAGGGAAAG
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	42	52	-	12.0909	3.28e-05	1	AAGGTGTCAAG
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	42	52	-	12.0909	3.28e-05	1	AAGGTGTCAAG
EBF1	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	33	46	-	10.918	3.28e-05	0.365	AGTCCCAGGGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	+	12.3273	3.28e-05	0.0548	CGCCCTTGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	23	34	-	12.3273	3.28e-05	0.0548	CCCCCCAGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	23	34	-	12.3273	3.28e-05	0.0548	CCCCCCAGGCCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	44	55	+	12.3273	3.28e-05	0.0548	CCCCCCAGGCCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	-	12.3273	3.28e-05	0.0548	CGCCCTTGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	52	63	-	12.3273	3.28e-05	0.0548	CGCCCGAGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	52	63	-	12.3273	3.28e-05	0.0548	CGCCCGAGGGGA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	97	108	-	12.3273	3.28e-05	0.0548	CGCCCCGCGGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	33	43	+	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	52	62	+	11.7091	3.29e-05	0.0141	ACCCCTGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	98	108	+	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	17	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	30	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	30	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	30	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	30	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	61	71	-	11.7091	3.29e-05	0.0141	ACCCCTGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	80	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	82	-	11.7091	3.29e-05	0.0141	ACGCACGCGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	36	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	36	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	39	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	60	69	+	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	60	69	+	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	98	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	98	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	98	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	106	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	111	-	12.4	3.29e-05	0.174	CCCAGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	111	-	12.4	3.29e-05	0.174	CCCAGCTGCT
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	60	71	-	12.13	3.29e-05	1	GCTATGCAAATA
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	+	11.551	3.29e-05	0.643	GTTGCGTAAT
MAX	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	12.8846	3.29e-05	0.293	AGCACGTGAC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	12.8846	3.29e-05	0.293	CCCACGTGAT
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	12.8846	3.29e-05	0.293	CCCACGTGAT
MAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	12.8846	3.29e-05	0.293	CCCACGTGAT
MAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	12.8846	3.29e-05	0.293	CCCACGTGAT
MAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	12.8846	3.29e-05	0.293	CCCACGTGAT
MAX	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	12.8846	3.29e-05	0.293	AGCACGTGAC
RXRG	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	29	42	+	4.46809	3.29e-05	0.48	TGGGTGAAAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	4	14	+	12.4182	3.29e-05	0.0665	ACCCTCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	4	14	+	12.4182	3.29e-05	0.0665	ACCCTCAGGCC
INSM1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	40	51	+	11.8265	3.29e-05	0.148	GGGAAGGGGGAG
INSM1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	64	75	-	11.8265	3.29e-05	0.148	GGGAAGGGGGAG
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	48	65	-	1.44828	3.29e-05	0.661	AACACGTCAGAAAACGTC
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	48	65	-	1.44828	3.29e-05	0.661	AACACGTCAGAAAACGTC
Klf12	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	5	19	-	10.2131	3.29e-05	0.0485	AGCCCCGCCCCGCTC
Klf12	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	29	43	+	10.2131	3.29e-05	0.0485	AGCCCCGCCCCGCTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	22	36	-	10.2131	3.29e-05	0.0485	CGCCCCGCCCTCTCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	55	69	+	10.2131	3.29e-05	0.0485	AGCCCCGCCCCGCTC
Klf12	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	46	60	-	10.2131	3.29e-05	0.0485	AGCCCCGCCCCGCTC
Klf12	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	79	93	+	10.2131	3.29e-05	0.0485	CGCCCCGCCCTCTCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	72	86	-	10.2131	3.29e-05	0.0485	AGCCCCGCCCCGCTC
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	34	44	+	12.1837	3.29e-05	0.531	CATGCTGGTTC
PLAG1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	13	26	+	7.77551	3.29e-05	0.0663	GGGTCGGTGAGGGG
NRL	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	53	63	+	11.4423	3.29e-05	0.776	TTCTTGCTGAC
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	74	88	-	9.38158	3.29e-05	0.209	ATCATGAGTGAGCTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	17	-	11.7377	3.29e-05	0.118	ATGGCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	17	-	11.7377	3.29e-05	0.118	ATGGCGGAAGTG
EHF	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	46	-	11.7377	3.29e-05	0.118	GAGGCGGAAGTC
EHF	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	53	64	+	11.7377	3.29e-05	0.118	GAGGCGGAAGTC
EHF	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	62	-	11.7377	3.29e-05	0.118	GAGGCGGAAGTC
EHF	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	69	80	+	11.7377	3.29e-05	0.118	GAGGCGGAAGTC
EHF	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	98	109	+	11.7377	3.29e-05	0.118	ATGGCGGAAGTG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	72	84	-	10.2241	3.29e-05	0.134	ACGCCGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	72	84	-	10.2241	3.29e-05	0.134	ACGCCGGAAGTTG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	16	29	-	10.0328	3.29e-05	0.177	TGCCCCACGCGGCT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	16	29	-	10.0328	3.29e-05	0.177	TGCCCCACGCGGCT
GLIS2	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	86	99	+	10.0328	3.29e-05	0.177	TGCCCCACGCGGCT
ETV5	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	11.8727	3.29e-05	0.081	TCCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	11.8727	3.29e-05	0.081	TCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	11.8727	3.29e-05	0.081	TCCGGAAGTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	13	29	+	6.38182	3.29e-05	0.0211	TAAGCTCCCCCCCTCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	13	29	+	6.38182	3.29e-05	0.0211	TAAGCTCCCCCCCTCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	13	29	+	6.38182	3.29e-05	0.0211	TAAGCTCCCCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	13	29	+	6.38182	3.29e-05	0.0211	TAAGCTCCCCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	29	45	+	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	29	45	+	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	29	45	+	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	29	45	+	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	29	45	+	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	62	78	+	6.38182	3.29e-05	0.0211	CAGGCCACTGCCACATC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	62	78	+	6.38182	3.29e-05	0.0211	CAGGCCACTGCCACATC
SP4	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	70	86	-	6.38182	3.29e-05	0.0211	CCTTCCCCGCCCCCCTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	12.3455	3.29e-05	0.0946	TCCGGAAGCA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	48	57	+	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	58	67	+	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	76	85	+	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	103	112	+	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	3	12	-	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	30	39	-	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	46	55	-	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	48	57	-	11.8807	3.29e-05	0.0477	CCCTCCCCAC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	30	41	+	12.069	3.29e-05	0.365	ACGCCCACCGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12	3.29e-05	0.0756	GCCGGAAATG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12	3.29e-05	0.0756	GCCGGAAATG
ELK1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12	3.29e-05	0.0756	GCCGGAAATG
ELK1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12	3.29e-05	0.0756	GCCGGAAATG
ELK1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12	3.29e-05	0.0756	GCCGGAAATG
SP3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	36	46	+	12.0813	3.29e-05	0.0169	GCCACTCCCAG
SP3	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	77	87	+	12.0813	3.29e-05	0.0169	GCCACTCCCAG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	69	79	-	12.0813	3.29e-05	0.0169	GCCACTCCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	69	79	-	12.0813	3.29e-05	0.0169	GCCACTCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	69	79	-	12.0813	3.29e-05	0.0169	GCCACTCCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	69	79	-	12.0813	3.29e-05	0.0169	GCCACTCCCAG
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	35	51	-	-12.5857	3.29e-05	0.94	TGCTTCCCAGTGACTCA
IRF2	WILDTYPE__Antisense.noflip.NA__chr2:74612556..74612670,+__446.1.0.0	82	99	+	7.62385	3.29e-05	0.595	CAAAAGCCAAAGCAGCCA
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	7	23	-	12.039	3.29e-05	1	AATTTGAAAACAAACAC
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	7	23	-	12.039	3.29e-05	1	AATTTGAAAACAAACAC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	12	22	-	12.6727	3.29e-05	0.165	TCTGACTCATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	50	60	+	12.6727	3.29e-05	0.165	TCTGACTCATG
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	83	93	-	12.6727	3.29e-05	0.165	TCTGACTCATG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	50	60	+	12.377	3.29e-05	0.0475	GCGGAAGTTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	50	60	+	12.377	3.29e-05	0.0475	GCGGAAGTTCC
Gabpa	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	55	65	-	12.377	3.29e-05	0.0475	GCGGAAGTTCC
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	69	+	13.0204	3.3e-05	0.141	GACACCTGTCACC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	69	+	13.0204	3.3e-05	0.141	GACACCTGTCACC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	69	+	13.0204	3.3e-05	0.141	GACACCTGTCACC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	39	56	-	-10.7105	3.3e-05	0.0346	GGAGGGCAAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	39	56	-	-10.7105	3.3e-05	0.0346	GGAGGGCAAGGAGGAGGA
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	-	11.8525	3.3e-05	0.0641	TCCCTCGCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	-	11.8525	3.3e-05	0.0641	AGCCCCCAAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	-	11.8525	3.3e-05	0.0641	AGCCCCCAAGGGC
EGR3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	11	25	-	8.62069	3.3e-05	0.0347	CCCCGCCCCTGCAGA
EGR3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	90	104	+	8.62069	3.3e-05	0.0347	CCCCGCCCCTGCAGA
Nr5a2	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	41	55	-	11.7241	3.3e-05	0.365	AAGTTCAGGGTTAGC
Nr5a2	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	60	74	+	11.7241	3.3e-05	0.365	AAGTTCAGGGTTAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	36	+	11.8793	3.3e-05	0.00929	TCCCCGCCCAGCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	36	+	11.8793	3.3e-05	0.00929	TCCCCGCCCAGCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	36	+	11.8793	3.3e-05	0.00929	TCCCCGCCCAGCGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	36	+	11.8793	3.3e-05	0.00929	TCCCCGCCCAGCGCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	57	71	-	11.8793	3.3e-05	0.00929	GTCGCGCCCCTTCCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	57	71	-	11.8793	3.3e-05	0.00929	GTCGCGCCCCTTCCG
SP2	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	79	93	-	11.8793	3.3e-05	0.00929	TCCCCGCCCAGCGCT
FEV	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.3846	3.3e-05	0.102	AGCGGAAGTA
RELA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	34	43	-	12.1429	3.3e-05	0.201	CGGAGTTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	34	43	-	12.1429	3.3e-05	0.201	CGGAGTTCCC
RELA	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	72	81	+	12.1429	3.3e-05	0.201	CGGAGTTCCC
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	45	57	-	9.37705	3.3e-05	1	TTCCAGAACCTCC
HSF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	45	57	-	9.37705	3.3e-05	1	TTCCAGAACCTCC
ZIC1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	19	32	-	8.46809	3.3e-05	0.0959	CGCCCCCAGCGGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	83	96	+	8.46809	3.3e-05	0.0959	CGCCCCCAGCGGCG
BHLHE40	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	13.1731	3.3e-05	0.245	CGCACGTGCA
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	13.1731	3.3e-05	0.245	GTCACGTGAG
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	13.1731	3.3e-05	0.245	GTCACGTGAG
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	13.1731	3.3e-05	0.245	GTCACGTGAG
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	13.1731	3.3e-05	0.245	GTCACGTGAG
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	13.1731	3.3e-05	0.245	GTCACGTGAG
BHLHE40	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	13.1731	3.3e-05	0.245	CGCACGTGCA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	11	21	+	11.9636	3.3e-05	0.272	TTTCAGGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	11	21	+	11.9636	3.3e-05	0.272	TTTCAGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	11	21	+	11.9636	3.3e-05	0.272	TTTCAGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	11	21	+	11.9636	3.3e-05	0.272	TTTCAGGGAAG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	30	48	+	11.7903	3.3e-05	0.137	CGGGGCTGCGGGGCGGGCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	30	48	+	11.7903	3.3e-05	0.137	CGGGGCTGCGGGGCGGGCC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	30	48	+	11.7903	3.3e-05	0.137	CGGGGCTGCGGGGCGGGCC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	30	48	+	11.7903	3.3e-05	0.137	CGGGGCTGCGGGGCGGGCC
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	29	46	-	7.05172	3.3e-05	0.21	GGGCCGCGCCTCCTGCTG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	29	46	-	7.05172	3.3e-05	0.21	GGGCCGCGCCTCCTGCTG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	48	61	-	7.76531	3.3e-05	0.0663	GAGGGTCACGGGAG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	91	105	+	9.94286	3.3e-05	0.101	GGCTCCCCGCTGAAC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	21	32	+	12.0263	3.3e-05	0.0249	GCCACGTCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	21	32	+	12.0263	3.3e-05	0.0249	GCCACGTCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	21	32	+	12.0263	3.3e-05	0.0249	GCCACGTCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	21	32	+	12.0263	3.3e-05	0.0249	GCCACGTCCCCC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	12	27	-	11.5636	3.3e-05	0.0374	GCCCACCCACCCCACT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	30	45	+	11.5636	3.3e-05	0.0374	CCCCTCCCTCCCAAAT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	19	34	-	11.5636	3.3e-05	0.0374	CACCGCCCACGTGTCA
EGR4	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	36	51	+	11.5636	3.3e-05	0.0374	CGCCGCCCCCGCGGGC
EGR4	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	31	46	-	11.5636	3.3e-05	0.0374	CCCCGCCCGCCCCACG
EGR4	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	69	84	+	11.5636	3.3e-05	0.0374	CCCCGCCCGCCCCACG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	24	41	+	10.8659	3.3e-05	0.121	ACCCAACCGATTGGTTCC
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	24	41	+	10.8659	3.3e-05	0.121	ACCCAACCGATTGGTTCC
GATA2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	24	37	+	12.7455	3.3e-05	0.951	TGACCGTTATCTGC
GATA2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	24	37	+	12.7455	3.3e-05	0.951	TGACCGTTATCTGC
GATA2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	72	85	+	12.7455	3.3e-05	0.951	TGACCGTTATCTGC
GATA2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	72	85	+	12.7455	3.3e-05	0.951	TGACCGTTATCTGC
GATA2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	72	85	+	12.7455	3.3e-05	0.951	TGACCGTTATCTGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	47	58	-	12.3091	3.3e-05	0.0548	CGCCCTGAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	47	58	-	12.3091	3.3e-05	0.0548	CGCCCTGAGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	67	78	+	12.3091	3.3e-05	0.0548	CGCCCTGAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	67	78	+	12.3091	3.3e-05	0.0548	CGCCCTGAGCCG
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	7	18	-	11.7759	3.3e-05	0.33	GAGCCCACCCAG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	7	18	-	11.7759	3.3e-05	0.33	GAGCCCACCCAG
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	7	18	-	11.7759	3.3e-05	0.33	GAGCCCACCCAG
MLXIPL	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	12.8636	3.3e-05	0.189	GACACGTGAC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	12.8636	3.3e-05	0.189	GACACGTGAC
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	12.8636	3.3e-05	0.189	GACACGTGAC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	12.8636	3.3e-05	0.189	GACACGTGAC
MLXIPL	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	12.8636	3.3e-05	0.189	GACACGTGAC
MLXIPL	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	12.8636	3.3e-05	0.189	GACACGTGAC
ETV6	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	17	-	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	21	-	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	49	58	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	61	70	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	61	70	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	78	87	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	78	87	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
ETV6	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	98	107	+	12.3846	3.3e-05	0.0871	GCAGGAAGTG
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	+	12.2241	3.3e-05	1	GGCATATGTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	41	+	11.7308	3.31e-05	0.0162	GTCCCACCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	21	34	-	11.7308	3.31e-05	0.0162	GCACTGCCCCCTCA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	21	34	-	11.7308	3.31e-05	0.0162	GCACTGCCCCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	56	+	11.7308	3.31e-05	0.0162	GTCCCACCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	56	+	11.7308	3.31e-05	0.0162	GTCCCACCCCTTCC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	5	19	+	11.7424	3.31e-05	0.0896	TCCTCGCGGGAGGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	5	19	+	11.7424	3.31e-05	0.0896	TCCTCGCGGGAGGCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	5	19	+	11.7424	3.31e-05	0.0896	TCCTCGCGGGAGGCG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	5	19	+	11.7424	3.31e-05	0.0896	TCCTCGCGGGAGGCG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	5	19	+	11.7424	3.31e-05	0.0896	TCCTCGCGGGAGGCG
ERF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	12.2571	3.31e-05	0.0886	ACAGGAAGTC
ERF	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	12.2571	3.31e-05	0.0886	ACAGGAAGTC
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	34	53	+	8.95556	3.31e-05	1	TAAGGTCATCCTCCCTCAAA
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	54	73	+	8.95556	3.31e-05	1	TAAGGTCATCCTCCCTCAAA
CDX1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	50	58	-	11.566	3.31e-05	1	GCCATAAAC
CDX1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	7	15	+	11.566	3.31e-05	1	GCCATAAAC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	+	11.7241	3.31e-05	0.0554	TGCCCCTGTGGCA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	1	10	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	1	10	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	4	13	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	1	10	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	14	23	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	14	23	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	14	23	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	7	16	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	7	16	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	17	26	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	17	26	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	12	21	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	12	21	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	13	22	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	13	22	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	27	36	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	21	30	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	21	30	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	33	42	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	33	42	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	33	42	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	34	43	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	34	43	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	34	43	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	32	41	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	32	41	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	52	61	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	52	61	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	53	62	+	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	53	62	-	12.1837	3.31e-05	0.0156	TGGGTGTGTC
Klf4	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	73	82	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	79	88	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	105	114	+	12.1837	3.31e-05	0.0156	GGGGCGGGTC
Klf4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	102	111	-	12.1837	3.31e-05	0.0156	GGGGCGGGTC
REST	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	87	107	+	7.05102	3.31e-05	0.208	GGCTGAACCATGGCGGGCGGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	-	12.8936	3.31e-05	0.211	GATGAGTCACT
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	13	22	-	13.1224	3.31e-05	0.422	TGCACCTGTA
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	13	22	-	13.1224	3.31e-05	0.422	TGCACCTGTA
TCF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	46	55	-	13.1224	3.31e-05	0.422	TGCACCTGTA
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	46	55	-	13.1224	3.31e-05	0.422	TGCACCTGTA
SP4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	53	69	+	6.36364	3.31e-05	0.0211	CCGGCCCCTCCCCACCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	29	45	-	6.36364	3.31e-05	0.0211	CGCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	29	45	-	6.36364	3.31e-05	0.0211	CGCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	29	45	-	6.36364	3.31e-05	0.0211	CGCGCCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	29	45	-	6.36364	3.31e-05	0.0211	CGCGCCCCGCCCCGCCC
SP4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	46	62	-	6.36364	3.31e-05	0.0211	CCGGCCCCTCCCCACCC
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	24	39	+	4.34483	3.31e-05	0.299	TTCCCAGCATCCCTCC
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	24	39	+	4.34483	3.31e-05	0.299	TTCCCAGCATCCCTCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	55	69	+	10.1967	3.31e-05	0.0485	TGCCCCGCCCCCTGC
HES5	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	64	75	-	5.60345	3.31e-05	0.296	TGACACGTGGTG
HES5	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	79	-	5.60345	3.31e-05	0.296	AGGCACGTGGTG
HES5	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	40	51	+	5.60345	3.31e-05	0.296	TGACACGTGGTG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr5:162864260..162864374,-__670.1.0.0	94	108	-	12.1923	3.31e-05	0.114	ACGCCGGCCAATCCG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	7	24	+	-10.7237	3.31e-05	0.0346	AGAGGGAGGAAAGGTGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	30	47	+	-10.7237	3.31e-05	0.0346	GGCCGGATGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	30	47	+	-10.7237	3.31e-05	0.0346	GGCCGGATGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	56	73	+	-10.7237	3.31e-05	0.0346	TAAGGGAAGCAAGGTATA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	56	73	+	-10.7237	3.31e-05	0.0346	TAAGGGAAGCAAGGTATA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	56	73	+	-10.7237	3.31e-05	0.0346	TAAGGGAAGCAAGGTATA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	56	73	+	-10.7237	3.31e-05	0.0346	TAAGGGAAGCAAGGTATA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	90	107	+	-10.7237	3.31e-05	0.0346	GGGAATCAGGCAGGAGAG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	+	12.2909	3.31e-05	0.0893	TGCCCCGCGGCT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	+	12.2909	3.31e-05	0.0893	CGCCCGGAGGGA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	102	+	12.2909	3.31e-05	0.0893	CGCCCCCGGCCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	13	24	-	12.2909	3.31e-05	0.0893	CGCCCCCGGCCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	-	12.2909	3.31e-05	0.0893	TGCCCCGCGGCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	57	76	-	6.00917	3.31e-05	0.0503	CATCGCCCCACCCCCTCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	57	76	-	6.00917	3.31e-05	0.0503	CATCGCCCCACCCCCTCCCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	-	11.918	3.31e-05	0.0586	TCCCTCCCGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	-	11.918	3.31e-05	0.0586	TCCCTCCCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	-	11.918	3.31e-05	0.0586	TCCCTCCCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	+	11.918	3.31e-05	0.0586	GGCCCCGGCGGCT
Rarb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	8	23	-	-1.08621	3.31e-05	0.851	GAAGCTGAAGAGGCCA
Rarb	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	8	23	-	-1.08621	3.31e-05	0.851	GAAGCTGAAGAGGCCA
Rarb	WILDTYPE__Enhancer.flip.sense__chr5:25910755..25910869,+__1911.1.0.0	38	53	+	-1.08621	3.31e-05	0.851	GAAGCTGAAGAGGCCA
Rarb	FLIPPED__Enhancer.flip.antisense__chr5:25910755..25910869,-__2881.1.0.0	62	77	-	-1.08621	3.31e-05	0.851	GAAGCTGAAGAGGCCA
Rarb	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	92	107	+	-1.08621	3.31e-05	0.851	GAAGCTGAAGAGGCCA
HOXD12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	20	30	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	20	30	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	20	30	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	39	49	-	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	66	76	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	66	76	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	66	76	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	66	76	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	66	76	+	12.4754	3.31e-05	1	AATCATAAAAC
HOXD12	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	85	95	-	12.4754	3.31e-05	1	AATCATAAAAC
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	27	44	-	12.2182	3.31e-05	0.915	TTAATCACCTGGGTGCAG
GATA1::TAL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	27	44	-	12.2182	3.31e-05	0.915	TTAATCACCTGGGTGCAG
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	38	52	-	12.2766	3.31e-05	0.311	AAGGGTGAGGCCACA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	35	+	12.2143	3.31e-05	0.0857	GGCCCCAGGGGA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	89	101	+	11.5238	3.31e-05	0.475	AGAAGGCACGTGT
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	89	101	+	11.5238	3.31e-05	0.475	AGAAGGCACGTGT
FOXA1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	54	68	+	12.6327	3.31e-05	0.864	GGTTTGTTTACAGAG
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	61	71	-	12.6939	3.31e-05	0.101	GTCATGTGGTT
FIGLA	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	38	47	-	12.3793	3.31e-05	0.859	CCCACCTGTA
Mecom	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	27	40	-	10.4944	3.31e-05	1	AAGATAAGAAAAGC
IRF8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	42	55	+	1.01818	3.32e-05	0.664	GCTAAACCGGAACT
IRF8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	42	55	+	1.01818	3.32e-05	0.664	GCTAAACCGGAACT
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	29	41	-	12.2069	3.32e-05	1	GACATTTGCATCT
GLIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	26	39	-	6.22727	3.32e-05	0.379	CCCCCCCCGCCAAG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	20	30	-	12.2586	3.32e-05	0.215	AACTGTGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	20	30	-	12.2586	3.32e-05	0.215	AACTGTGGTTT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	64	74	-	12.2586	3.32e-05	0.215	CACTGTGGTTA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	65	75	+	12.2586	3.32e-05	0.215	CACTGTGGTTA
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	65	75	+	12.2586	3.32e-05	0.215	CACTGTGGTTA
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	65	75	+	12.2586	3.32e-05	0.215	CACTGTGGTTA
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	84	95	+	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	84	95	+	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	84	95	+	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	84	95	+	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	29	40	-	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	29	40	-	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	29	40	-	12.2889	3.32e-05	1	TGATGCAATCTC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	29	40	-	12.2889	3.32e-05	1	TGATGCAATCTC
ATF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	45	57	+	11.4262	3.32e-05	0.506	TTCTGATGTAACA
ATF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	45	57	+	11.4262	3.32e-05	0.506	TTCTGATGTAACA
NR2F1	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	23	35	-	12.5714	3.32e-05	0.367	AAAAGGTCACGGC
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	43	55	+	12.5714	3.32e-05	0.367	TCGAGGTCAGGAG
NR2F1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	47	59	+	12.5714	3.32e-05	0.367	CAAAGGTCACCTC
NR2F1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	47	59	+	12.5714	3.32e-05	0.367	CAAAGGTCACCTC
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	46	58	-	12.5714	3.32e-05	0.367	TTGAGGTCAATGG
NR2F1	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	80	92	+	12.5714	3.32e-05	0.367	AAAAGGTCACGGC
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	101	113	+	12.5714	3.32e-05	0.367	TTGAGGTCAATGG
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	38	51	-	10.3333	3.32e-05	0.253	ACGCCGCGTCACCC
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	64	77	+	10.3333	3.32e-05	0.253	ACGCCGCGTCACCC
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	4	14	-	13.0612	3.32e-05	0.131	AGCAGCTGTGG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	4	14	-	13.0612	3.32e-05	0.131	AGCAGCTGTGG
TP53	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	11	28	-	8.4898	3.32e-05	0.979	GGCCTGCCCGGGCTGGCT
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	85	102	+	8.4898	3.32e-05	0.979	TACATGCATGCACAAGAC
EGR3	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	8	22	-	8.60345	3.32e-05	0.0347	GCCCGCCCCCTCCCG
YY1	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	14	25	-	12.1346	3.32e-05	0.189	CAGGATGGCTCC
YY1	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	31	42	+	12.1346	3.32e-05	0.189	CAGGATGGCTCC
Rxra	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	65	78	+	5.36585	3.32e-05	0.398	TGGGTGAGAGGTTA
HSF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	61	73	+	10.7091	3.32e-05	1	TTCCAGATCATTT
HSF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	61	73	+	10.7091	3.32e-05	1	TTCCAGATCATTT
HSF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	81	93	+	10.7091	3.32e-05	1	TTCCAGATCATTT
HSF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	81	93	+	10.7091	3.32e-05	1	TTCCAGATCATTT
FOSL2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	82	92	+	12.8545	3.32e-05	0.15	TCATGAGTCAG
TEAD1	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	88	97	+	11.9032	3.32e-05	0.888	AACATTCCTT
Klf1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	19	29	+	12.2424	3.32e-05	0.044	AACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	41	51	-	12.2424	3.32e-05	0.044	GACTCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	41	51	-	12.2424	3.32e-05	0.044	GACTCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	64	74	-	12.2424	3.32e-05	0.044	AACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	64	74	-	12.2424	3.32e-05	0.044	AACCCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	85	95	+	12.2424	3.32e-05	0.044	TTCCACACCCA
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	6	16	+	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	6	16	+	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	22	32	+	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	40	-	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	43	53	+	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	43	53	+	12.082	3.32e-05	0.136	GACAGGAAACA
ETV2	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	62	72	-	12.082	3.32e-05	0.136	GACAGGAAACA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	72	-	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	72	-	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	93	-	12.082	3.32e-05	0.136	CACAGGAAATG
ETV2	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	109	-	12.082	3.32e-05	0.136	CACAGGAAATG
E2F4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	4	14	-	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	8	18	-	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	10	20	-	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	46	56	+	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	46	56	+	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	57	67	-	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	95	105	+	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
E2F4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	101	111	+	12.5172	3.32e-05	0.0451	GGGCGGGGAGA
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	9	19	+	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	9	19	+	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	9	19	+	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	9	19	+	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	55	65	+	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	50	60	-	11.0862	3.32e-05	0.0751	ACGGCCACGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	60	70	-	11.0862	3.32e-05	0.0751	CCGGCTACGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	96	106	-	11.0862	3.32e-05	0.0751	ACGGCCACGCC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	42	55	-	12.0141	3.32e-05	0.214	ACTAAGAGGAAGTT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	42	55	-	12.0141	3.32e-05	0.214	ACTAAGAGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	42	55	-	12.0141	3.32e-05	0.214	ACTAAGAGGAAGTT
ELK3	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	12.3793	3.32e-05	0.0964	ACCGGAAGAG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	12.3793	3.32e-05	0.0964	ACCGGAAGAG
PPARG	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	54	73	+	8.94444	3.32e-05	1	CAAGGGCAGACGCCCCTCCT
PPARG	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	42	61	-	8.94444	3.32e-05	1	CAAGGGCAGACGCCCCTCCT
Sox3	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	2	11	-	12.7586	3.32e-05	0.659	CCATTGTTTT
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	12.2113	3.32e-05	0.104	ACCGGAAGGG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	12.2113	3.32e-05	0.104	ACCGGAAGGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	10	24	+	9.92857	3.32e-05	0.101	GACGCCCCGCTGCCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	52	66	+	9.92857	3.32e-05	0.101	GACGCCCCGCTGCCG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	+	8.2449	3.32e-05	0.234	TGTGAGTCATT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	64	74	+	12.5455	3.32e-05	0.0506	TCCCCCAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	64	74	+	12.5455	3.32e-05	0.0506	TCCCCCAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	92	-	12.5455	3.32e-05	0.0506	GGCCTGAGGCT
ELF1	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	20	31	+	11	3.32e-05	0.0999	CTTCCGGAAGTC
ELF1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	35	-	11	3.32e-05	0.0999	CTTCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	80	91	+	11	3.32e-05	0.0999	CTTCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	80	91	+	11	3.32e-05	0.0999	CTTCCGGAAGTC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	43	53	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	43	53	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	43	53	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	43	53	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	95	105	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	95	105	-	12.4	3.32e-05	0.0665	AGCCCCAGGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	30	47	+	-10.7368	3.32e-05	0.0347	GGAAGGAGCGAGCGAGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	68	85	-	-10.7368	3.32e-05	0.0347	GGAAGGAGCGAGCGAGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	66	79	-	7.7449	3.33e-05	0.0666	GGGCCCCTCAGGTG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	24	36	-	12.1837	3.33e-05	0.301	GAAATGATGAAAT
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	24	36	-	12.1837	3.33e-05	0.301	GAAATGATGAAAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	30	42	-	12.1837	3.33e-05	0.301	TTCATGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	30	42	-	12.1837	3.33e-05	0.301	TTCATGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	30	42	-	12.1837	3.33e-05	0.301	TTCATGACGTCAC
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	30	42	-	12.1837	3.33e-05	0.301	TTCATGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	30	42	-	12.1837	3.33e-05	0.301	TTCATGACGTCAC
Stat4	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	31	44	+	12.569	3.33e-05	0.222	TTGACAGGAAGAGG
Stat4	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	71	84	-	12.569	3.33e-05	0.222	TTGACAGGAAGAGG
BATF3	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	32	45	-	3.71212	3.33e-05	0.147	GAATGACGTCAGAC
Nr5a2	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	67	81	+	11.7069	3.33e-05	0.365	AGGGCGAAGGCCATC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	70	84	-	11.7069	3.33e-05	0.365	GGACTGAAGGTCAGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	70	84	-	11.7069	3.33e-05	0.365	GGACTGAAGGTCAGT
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	88	102	-	11.7069	3.33e-05	0.365	GCCTCCAAGGCCGGC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	8	17	+	12.1212	3.33e-05	0.271	GGGGCCTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	8	17	+	12.1212	3.33e-05	0.271	GGGGCCTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	43	52	-	12.1212	3.33e-05	0.271	TGGGGATTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	43	52	-	12.1212	3.33e-05	0.271	TGGGGATTCC
REL	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	104	113	-	12.1212	3.33e-05	0.271	GGGGCCTTCC
Esrra	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	35	45	+	9.58182	3.33e-05	0.862	TTCAACGTCAT
Esrra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	80	90	-	9.58182	3.33e-05	0.862	TTCAACGTCAT
Esrra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	80	90	-	9.58182	3.33e-05	0.862	TTCAACGTCAT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	17	31	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	17	31	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	17	31	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	17	31	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	17	31	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	29	43	-	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	72	86	+	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
Klf12	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	84	98	-	10.1803	3.33e-05	0.0485	GGCCCCGCCCCGGGC
SP2	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	29	+	11.8621	3.33e-05	0.00933	GGCCCGCCCACGTAA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	39	53	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	39	53	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	39	53	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	58	72	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	58	72	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	58	72	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	58	72	+	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	71	85	+	11.8621	3.33e-05	0.00933	GCTCCGCCTTTTTGG
SP2	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	30	44	-	11.8621	3.33e-05	0.00933	GCTCCGCCTTTTTGG
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	62	76	-	11.8621	3.33e-05	0.00933	CCCCTGCCCCGCCCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	80	94	-	11.8621	3.33e-05	0.00933	TCCCCGCCCAACTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	86	100	-	11.8621	3.33e-05	0.00933	GGCCCGCCCACGTAA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	86	100	-	11.8621	3.33e-05	0.00933	GGCCCGCCCACGTAA
HOXC13	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	55	65	+	12.1129	3.33e-05	1	CGTCGTAAAAA
HOXC13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	50	60	-	12.1129	3.33e-05	1	CGTCGTAAAAA
HOXC13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	50	60	-	12.1129	3.33e-05	1	CGTCGTAAAAA
Hic1	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	16	24	+	12.2115	3.33e-05	0.516	ATGCCAACA
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	64	72	-	12.2115	3.33e-05	0.516	ATGCCAACA
Hic1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	64	72	-	12.2115	3.33e-05	0.516	ATGCCAACA
Hic1	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	91	99	-	12.2115	3.33e-05	0.516	ATGCCAACA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	-	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	+	12.3654	3.33e-05	0.0703	TGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	+	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	+	12.3654	3.33e-05	0.0703	CGCCCCCGGCT
BHLHE41	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	10.2885	3.33e-05	0.145	GTCACGTGTC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	10.2885	3.33e-05	0.145	GTCACGTGTC
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	10.2885	3.33e-05	0.145	GTCACGTGTC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	10.2885	3.33e-05	0.145	GTCACGTGTC
BHLHE41	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	10.2885	3.33e-05	0.145	GTCACGTGTC
BHLHE41	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	10.2885	3.33e-05	0.145	GTCACGTGTC
BARHL2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	52	61	+	11.12	3.33e-05	1	GATAAATGGT
BARHL2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	54	63	-	11.12	3.33e-05	1	GATAAATGGT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	-	11.7069	3.33e-05	0.0554	TCCCGTCAGGGGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	28	38	+	12.5385	3.33e-05	0.273	AAGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	28	38	+	12.5385	3.33e-05	0.273	AAGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	28	38	+	12.5385	3.33e-05	0.273	AAGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	28	38	+	12.5385	3.33e-05	0.273	AAGCTGAGTCA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	-	9.16327	3.33e-05	0.125	TGTGACGTAACA
Stat6	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	24	38	+	12.4655	3.33e-05	0.594	CCGTTCCGCGGAACG
Stat6	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	77	91	-	12.4655	3.33e-05	0.594	CCGTTCCGCGGAACG
ETV2	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	38	48	+	12.0656	3.33e-05	0.136	CACCGGAAGCC
ETV2	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	48	58	+	12.0656	3.33e-05	0.136	CACCGGAAGCC
ETV2	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	67	-	12.0656	3.33e-05	0.136	CACCGGAAGCC
ETV2	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	77	-	12.0656	3.33e-05	0.136	CACCGGAAGCC
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	17	27	+	12.6379	3.34e-05	0.895	ATCTGTTTACT
Foxo1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	17	27	+	12.6379	3.34e-05	0.895	ATCTGTTTACT
PAX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	20	36	-	7.92727	3.34e-05	0.51	CGCCCTGGTTGGGTGGA
PAX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	20	36	-	7.92727	3.34e-05	0.51	CGCCCTGGTTGGGTGGA
PAX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	20	36	-	7.92727	3.34e-05	0.51	CGCCCTGGTTGGGTGGA
PAX1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	44	60	-	7.92727	3.34e-05	0.51	CGCCCTGGTTGGGTGGA
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	43	56	+	5.50909	3.34e-05	0.149	CTAAACCGGAACTG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	43	56	+	5.50909	3.34e-05	0.149	CTAAACCGGAACTG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	2	22	-	11	3.34e-05	0.0131	GGGAAAGAATGAAGGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	19	39	-	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	19	39	-	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	19	39	-	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	19	39	-	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	19	39	-	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	27	47	-	11	3.34e-05	0.0131	AGGGCTGGGGTGGAATGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	27	47	-	11	3.34e-05	0.0131	AGGGCTGGGGTGGAATGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	27	47	-	11	3.34e-05	0.0131	AGGGCTGGGGTGGAATGGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	59	79	-	11	3.34e-05	0.0131	GAGGGAGAGATGGGAGGGCGT
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	36	56	+	11	3.34e-05	0.0131	GAGGGAGAGATGGGAGGGCGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	38	58	+	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	38	58	+	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	38	58	+	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	38	58	+	11	3.34e-05	0.0131	AGTGGAGGGCTGGGGGTAGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	52	72	+	11	3.34e-05	0.0131	GAAGGCGGCGGGCCGAGGGAA
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	-	12.6545	3.34e-05	0.165	GCTGACTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	-	12.6545	3.34e-05	0.165	GCTGACTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	-	12.6545	3.34e-05	0.165	GCTGAGTCATA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	-	12.6545	3.34e-05	0.165	GCTGAGTCATA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	-	12.6545	3.34e-05	0.165	GCTGACTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	-	12.6545	3.34e-05	0.165	GCTGACTCACC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	27	38	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	27	38	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	43	54	+	12.2909	3.34e-05	0.0548	TGCCCCGCGCCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	39	50	-	12.2909	3.34e-05	0.0548	AGCCCCCAGCCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	50	61	-	12.2909	3.34e-05	0.0548	AGCCCCCAGCCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	61	72	-	12.2909	3.34e-05	0.0548	TGCCCCGCGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	69	80	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	69	80	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	69	80	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	69	80	-	12.2909	3.34e-05	0.0548	CGCCCCCCGCCA
EGR4	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	22	37	-	11.5455	3.34e-05	0.0374	CCCCGCCGACGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	55	70	-	11.5455	3.34e-05	0.0374	CGACGCCCACCTCTTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	55	70	-	11.5455	3.34e-05	0.0374	CGACGCCCACCTCTTT
EGR4	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	78	93	+	11.5455	3.34e-05	0.0374	CCCCGCCGACGCCCCG
ELK4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	88	98	-	12.4727	3.34e-05	0.0516	GCCCTTCCGGG
ELK4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	18	+	12.4727	3.34e-05	0.0516	GCCCTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	17	27	+	12.4727	3.34e-05	0.0516	GCCCTTCCGGG
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	34	43	+	11.8226	3.34e-05	0.719	AGCATTCCAC
TEAD4	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	47	56	+	11.8226	3.34e-05	0.719	AACATTCCAG
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	13	+	12.0132	3.34e-05	0.025	TCCACGCCCCTA
SP8	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	8	19	+	12.0132	3.34e-05	0.025	ACCACTCCCCTA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	28	39	-	12.0132	3.34e-05	0.025	TCCACTCCCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	12	26	-	8.58621	3.34e-05	0.0347	CCCCGCCCCGGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	12	26	-	8.58621	3.34e-05	0.0347	CCCCGCCCCGGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	12	26	-	8.58621	3.34e-05	0.0347	CCCCGCCCCGGCCTC
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	37	51	+	8.58621	3.34e-05	0.0347	CCCCGCCCCGGCCTC
EGR3	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	64	78	-	8.58621	3.34e-05	0.0347	CCCCGCCCCGGCCTC
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	58	74	+	2.68182	3.34e-05	0.468	AATATTAGCATGACCTT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	11	21	+	12.2273	3.34e-05	0.044	TGACCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	11	21	+	12.2273	3.34e-05	0.044	TGACCCACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	15	25	-	12.2273	3.34e-05	0.044	TGACCCACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	57	67	+	12.2273	3.34e-05	0.044	TGACCCACCCT
NFYA	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	40	57	+	10.8415	3.34e-05	0.122	TCGGCGTCCATTGGTCCG
NFYA	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	58	75	-	10.8415	3.34e-05	0.122	TCGGCGTCCATTGGTCCG
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	3	16	+	8.75	3.34e-05	0.56	CCCACAGCTGCTGC
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	3	16	+	8.75	3.34e-05	0.56	CCCACAGCTGCTGC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	9	26	-	-10.75	3.34e-05	0.0348	GGAAATGCGGCAGGTGGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	99	+	10.2951	3.34e-05	0.102	AGCCCAGAAGGCGGCGGAC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	3	16	+	10.5862	3.34e-05	0.0274	GGCCCCTCCCCCCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	10	23	+	10.5862	3.34e-05	0.0274	AGCTCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	15	28	+	10.5862	3.34e-05	0.0274	TGGCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	15	28	+	10.5862	3.34e-05	0.0274	TGGCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	24	37	+	10.5862	3.34e-05	0.0274	TGGCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	24	37	+	10.5862	3.34e-05	0.0274	TGGCCCGCCCCCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	52	65	+	10.5862	3.34e-05	0.0274	AGCTCCGCCCCTCG
SP1	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	13	23	+	12.3462	3.34e-05	0.0107	TCTCCGCCCCA
SP1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	9	19	-	12.3462	3.34e-05	0.0107	GCCCCTCCCTA
SP1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	96	106	+	12.3462	3.34e-05	0.0107	GCCCCTCCCTA
ELF4	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	43	-	10.8361	3.34e-05	0.0945	GAGCCGGAAGGG
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	12.3548	3.34e-05	1	AGCATATGCC
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	12.3548	3.34e-05	1	AGCATATGCC
ID4	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	-	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	-	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	-	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	+	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	+	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	+	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	+	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	+	13.0656	3.34e-05	0.389	GGCACCTGCG
ID4	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	+	13.0656	3.34e-05	0.389	GGCACCTGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	+	12.2041	3.34e-05	0.0857	TCCCCGCAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	+	12.2041	3.34e-05	0.0857	TCCCCGCAGGCG
RARA	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	35	52	+	-5.98485	3.34e-05	1	GAGTGGATAACGTCATTT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	21	34	-	11.7115	3.34e-05	0.0163	TCTCCGCCCCTTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	33	46	-	11.7115	3.34e-05	0.0163	GATCTGCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:63461626..63461740,+__1091.1.0.0	53	66	+	11.7115	3.34e-05	0.0163	TCGCCGCCGCCGGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	53	66	-	11.7115	3.34e-05	0.0163	CCGCCACTCCCACA
Zfx	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	80	93	-	12.2727	3.34e-05	0.0448	GGGGACGAGGCCTT
PLAG1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	4	17	-	7.72449	3.34e-05	0.0666	GGGGGCCCCTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	64	77	-	7.72449	3.34e-05	0.0666	CGGGGGAACGGGGG
ZBTB18	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	50	62	+	11.4429	3.34e-05	0.729	TAGACAGCTGTGT
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	10	27	-	12.2	3.34e-05	0.915	TTAATCAGGCTGCCCCAG
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	10	27	-	12.2	3.34e-05	0.915	TTAATCAGGCTGCCCCAG
SP4	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	91	107	-	6.32727	3.35e-05	0.0213	TCGGCCCCGCCGCTCTC
STAT3	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	99	109	+	12.3265	3.35e-05	0.208	ATTCTAGGAAA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	34	47	-	7.64286	3.35e-05	0.365	AGGCATCATGCCAG
Ascl2	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	-	12.3714	3.35e-05	0.174	CGCAGCTGTC
Ascl2	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	+	12.3714	3.35e-05	0.174	CGCAGCTGTC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	+	12.3714	3.35e-05	0.174	CGCAGCTGTC
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	51	61	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	51	61	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	51	61	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	51	61	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	51	61	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	75	85	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	75	85	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	75	85	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	75	85	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	75	85	+	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	4	14	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	96	106	-	12.4483	3.35e-05	0.454	AAACCACAGTA
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	96	106	-	12.4483	3.35e-05	0.454	AAACCACAGTA
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	22	33	+	12.0303	3.35e-05	0.109	CGGCGTCCTCGC
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	22	33	+	12.0303	3.35e-05	0.109	CGGCGTCCTCGC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	56	66	-	13.0408	3.35e-05	0.156	GGCAGCTGGTT
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	56	66	-	13.0408	3.35e-05	0.156	GGCAGCTGGTT
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	-	12.7705	3.35e-05	0.333	TCCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	-	12.7705	3.35e-05	0.333	TCCACGTGGC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	28	37	-	12.6327	3.35e-05	0.0153	TCCACGCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	30	39	-	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	64	73	-	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	64	73	-	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	5	14	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	19	28	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	19	28	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	22	31	+	12.6327	3.35e-05	0.0153	TCCACGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	22	31	+	12.6327	3.35e-05	0.0153	TCCACGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	22	31	+	12.6327	3.35e-05	0.0153	TCCACGCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	22	31	+	12.6327	3.35e-05	0.0153	TCCACGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	25	34	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	26	35	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	26	35	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	26	35	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	26	35	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	28	37	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	28	37	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	42	51	+	12.6327	3.35e-05	0.0153	GCCTCGCCCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	12	21	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	12	21	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	12	21	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	12	21	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	48	57	+	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	58	67	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	75	84	-	12.1531	3.35e-05	0.0158	CGGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	94	103	+	12.1531	3.35e-05	0.0158	CGGGCGTGGC
TBX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	5	14	+	12.2364	3.35e-05	1	AGGGTGTGAT
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	5	14	+	12.2364	3.35e-05	1	AGGGTGTGAT
TBX21	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	77	86	-	12.2364	3.35e-05	1	AGGGTGTGAT
TBX21	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	101	110	-	12.2364	3.35e-05	1	AGGGTGTGAT
USF1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	27	37	-	12.3673	3.35e-05	0.136	CTCATGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	45	55	-	12.3673	3.35e-05	0.136	CTCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	45	55	-	12.3673	3.35e-05	0.136	CTCATGTGACA
USF1	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	7	17	+	12.3673	3.35e-05	0.136	CTCATGTGACA
USF1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	26	36	+	12.3673	3.35e-05	0.136	CTCATGTGACA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	84	+	13	3.35e-05	0.142	ACCACCTGCTTCT
Myod1	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	27	39	-	13	3.35e-05	0.142	ACCACCTGCTTCT
YY2	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	89	99	-	12.4242	3.35e-05	0.269	AGCCGCCATCT
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	2	12	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	2	12	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	2	12	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	2	12	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	20	30	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	20	30	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	39	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	39	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	39	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	39	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	39	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	59	69	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	59	69	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	59	69	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	59	69	+	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	89	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	89	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	89	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
ETV2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	113	-	12.0328	3.35e-05	0.136	AAGCGGAAGCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	14	24	+	11.8448	3.35e-05	0.0143	CACCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	31	41	+	11.8448	3.35e-05	0.0143	CACCCACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	31	41	+	11.8448	3.35e-05	0.0143	CACCCACCCAC
JUN	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	23	35	+	12.1633	3.35e-05	0.301	TGGCTGACGTCAT
MNT	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	-	12.7273	3.35e-05	0.247	ACCACGTGGA
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	12.7273	3.35e-05	0.247	GGCACGTGGC
MNT	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	+	12.7273	3.35e-05	0.247	ACCACGTGGA
MNT	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	-	12.7273	3.35e-05	0.247	ACCACGTGGA
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	+	12.8298	3.35e-05	0.211	GGTGACTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	+	12.8298	3.35e-05	0.211	GGTGACTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	+	12.8298	3.35e-05	0.211	GGTGACTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	-	12.8298	3.35e-05	0.211	GGTGACTCACA
ZIC1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	15	28	+	8.42553	3.35e-05	0.0959	CGCTTCCCGCTGCG
ZIC1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	9	22	-	8.42553	3.35e-05	0.0959	CCCACCCCACTGAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	28	45	-	-10.7632	3.35e-05	0.0349	AGGAGGGAGGAGGGAGGA
XBP1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	56	69	-	11.3269	3.35e-05	0.459	GGCGAGACGTCAGC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	-	8.7069	3.35e-05	0.882	GAGGACGAAACGTTCCG
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	68	81	-	10.303	3.35e-05	0.253	GCACCACGTCACGG
HNF4G	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	85	99	-	11.9808	3.35e-05	0.335	CAGCAGCAAAGTCCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	18	31	+	10.2273	3.36e-05	0.295	CAGGGCTGAGGTCA
EGR2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	7	17	-	11.0345	3.36e-05	0.0751	CTGCCCCCGCA
EGR2	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	12	22	-	11.0345	3.36e-05	0.0751	CCGCCTCCGCT
EGR2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	47	57	-	11.0345	3.36e-05	0.0751	CCGCGCACGCT
EGR2	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	97	107	+	11.0345	3.36e-05	0.0751	CCGCCTCCGCT
EGR2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	98	108	+	11.0345	3.36e-05	0.0751	CTGCCCCCGCA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	64	84	+	10.6452	3.36e-05	0.161	TGACAGTTCTTCTTTCACTCT
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	44	58	+	9.9	3.36e-05	0.101	TCCCTCCTACAGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	74	88	+	9.9	3.36e-05	0.101	TCCCTCCTACAGCGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	94	108	+	9.9	3.36e-05	0.101	GCCCTCCTGCTGATG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	27	41	-	9.9	3.36e-05	0.101	TCCCTCCTACAGCGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	57	71	-	9.9	3.36e-05	0.101	TCCCTCCTACAGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	59	73	-	9.9	3.36e-05	0.101	GCACCCCTGCTGCCC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	59	73	-	9.9	3.36e-05	0.101	GCACCCCTGCTGCCC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	59	73	-	9.9	3.36e-05	0.101	GCACCCCTGCTGCCC
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	59	73	-	9.9	3.36e-05	0.101	GCACCCCTGCTGCCC
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	59	68	-	12.6067	3.36e-05	0.871	ATGACGTGAC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	5	15	+	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	43	53	+	11.6909	3.36e-05	0.0143	GAGCGTGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	103	113	+	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	103	113	+	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	103	113	+	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	103	113	+	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	29	39	-	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	29	39	-	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	29	39	-	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	47	57	-	11.6909	3.36e-05	0.0143	CCGGCTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	62	72	-	11.6909	3.36e-05	0.0143	GAGCGTGCCCA
Bcl6	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	5	18	-	12	3.36e-05	0.397	GTCCCTGGAAGCCT
TBP	WILDTYPE__mrna.noflip.NA__chr10:14574678..14574792,-__974.1.0.0	8	22	-	11.9028	3.36e-05	0.451	CCATAAAAGGCTCCG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	49	62	-	7.71429	3.36e-05	0.0667	GGCGGCCAATGGGA
PBX1	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	65	76	+	12.2755	3.36e-05	1	TTGTCAATCAAA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr5:71643905..71644019,+__1913.1.0.0	8	20	+	11.3934	3.36e-05	0.506	TCATGTTGCAATA
Neurog1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	-	10.7802	3.36e-05	1	GCCATATGCT
Neurog1	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	29	38	+	10.7802	3.36e-05	1	ACCGTATGGG
Neurog1	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	77	86	-	10.7802	3.36e-05	1	ACCGTATGGG
Neurog1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	+	10.7802	3.36e-05	1	GCCATATGCT
REST	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	24	44	-	7.0102	3.36e-05	0.208	AGCCGAACGGCGGACAGAGCT
REST	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	71	91	+	7.0102	3.36e-05	0.208	AGCCGAACGGCGGACAGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	11	21	+	12.7241	3.36e-05	0.0495	GGGAGGGAACT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	11	21	+	12.7241	3.36e-05	0.0495	GGGAGGGAACT
E2F6	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	45	55	+	12.7241	3.36e-05	0.0495	GGGAGGGAACT
E2F6	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	60	70	-	12.7241	3.36e-05	0.0495	GGGAGGGAACT
E2F6	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	91	101	-	12.7241	3.36e-05	0.0495	TGGAGGGAAAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	27	41	+	11.8448	3.36e-05	0.00938	GCTCCACCCACCCAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	27	41	+	11.8448	3.36e-05	0.00938	GCTCCACCCACCCAC
SP2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	36	50	+	11.8448	3.36e-05	0.00938	ACACCGCCCCTTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	60	74	+	11.8448	3.36e-05	0.00938	ACCCCACCCCCATCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	12	26	-	11.8448	3.36e-05	0.00938	CCTCCTCCCCTTACC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	12	26	-	11.8448	3.36e-05	0.00938	CCTCCTCCCCTTACC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	12	26	-	11.8448	3.36e-05	0.00938	CCTCCTCCCCTTACC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	12	26	-	11.8448	3.36e-05	0.00938	CCTCCTCCCCTTACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	47	61	-	11.8448	3.36e-05	0.00938	CCCCCTCCCTCCAGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	47	61	-	11.8448	3.36e-05	0.00938	CCCCCTCCCTCCAGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	47	61	-	11.8448	3.36e-05	0.00938	CCCCCTCCCTCCAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	65	79	-	11.8448	3.36e-05	0.00938	ACACCGCCCCTTCCT
IRF9	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	43	57	+	0.436364	3.36e-05	0.506	ACGGGAACTGAAAGC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	+	12.5273	3.36e-05	0.0506	AGCCGGAGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	-	12.5273	3.36e-05	0.0506	AGCCGGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	71	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	71	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	71	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	71	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	106	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	106	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	106	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	106	+	12.5273	3.36e-05	0.0506	TGCCTGGGGCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	37	53	+	6.30909	3.36e-05	0.0213	CAGCCCACGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	68	84	+	6.30909	3.36e-05	0.0213	GGGACCCCCCCCACTCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	68	84	+	6.30909	3.36e-05	0.0213	GGGACCCCCCCCACTCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	2	18	-	6.30909	3.36e-05	0.0213	CAGCCCACGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	2	18	-	6.30909	3.36e-05	0.0213	CAGCCCACGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	8	24	-	6.30909	3.36e-05	0.0213	GGGGCTCCGCCCCTCGG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	8	24	-	6.30909	3.36e-05	0.0213	GGGGCTCCGCCCCTCGG
ATF7	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	67	80	-	9.37143	3.36e-05	0.149	TGATGGCGTCACGG
ELF4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	9	20	-	10.8197	3.36e-05	0.0948	AGCCCGGAAGGG
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	82	100	-	11.8065	3.36e-05	0.671	TGCCCTGGGAAAACCCGAT
SP3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	1	11	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	12	22	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	12	22	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	13	23	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	13	23	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	39	49	+	12.0732	3.36e-05	0.0169	GTCACGCCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	77	87	+	12.0732	3.36e-05	0.0169	AACACGCCCAT
SP3	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	102	112	+	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	3	13	-	12.0732	3.36e-05	0.0169	GACCCGCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	31	41	-	12.0732	3.36e-05	0.0169	GCCACGCCTTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	55	65	-	12.0732	3.36e-05	0.0169	GTCACGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	71	81	-	12.0732	3.36e-05	0.0169	GCCACGCCTTC
SP3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	104	114	-	12.0732	3.36e-05	0.0169	GACCCGCCCCT
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	35	53	+	11.7581	3.37e-05	0.138	GGAGTCAGTGATCCGTGGG
PAX5	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	61	79	-	11.7581	3.37e-05	0.138	GGGCGCAGGCGGCCGCGGC
PKNOX2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	+	5.72131	3.37e-05	0.598	AGGCAGCTGCCA
PKNOX2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	-	5.72131	3.37e-05	0.598	AGGCAGCTGCCA
ZIC4	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	5	19	-	11.6545	3.37e-05	0.103	CGCCCCATGCTGTGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	58	72	+	11.6545	3.37e-05	0.103	TGCCCCCTGGTGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	58	72	+	11.6545	3.37e-05	0.103	TGCCCCCTGGTGGCC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	96	110	+	11.6545	3.37e-05	0.103	CGCCCCATGCTGTGG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	88	99	+	12.2727	3.37e-05	0.0548	CCCCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	90	101	-	12.2727	3.37e-05	0.0548	CGCCCGGGGGGA
HLF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	-	12.4576	3.37e-05	1	AATTACGCAACG
ELK1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	15	24	+	11.9787	3.37e-05	0.0769	ACCGGATGTC
ELK1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	100	-	11.9787	3.37e-05	0.0769	ACCGGATGTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	52	65	+	12.2576	3.37e-05	0.045	ACTTCCGAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	52	65	+	12.2576	3.37e-05	0.045	ACTTCCGAGGCCTG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	36	-	5.77586	3.37e-05	0.189	CCCCACGTGCCC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	43	54	+	5.77586	3.37e-05	0.189	CCCCACGTGCCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	14	25	+	9.14286	3.37e-05	0.126	GCTGACATCACT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	14	25	+	9.14286	3.37e-05	0.126	GCTGACATCACT
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	97	108	+	9.81651	3.37e-05	0.848	TGACAAATGACA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	15	30	-	11.5273	3.37e-05	0.0374	GGCCGCCCGCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	15	30	-	11.5273	3.37e-05	0.0374	GGCCGCCCGCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	89	-	11.5273	3.37e-05	0.0374	CTCCACCCCCGCCTCC
POU4F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	78	93	+	9.01818	3.37e-05	1	CTGCATAATAGAGAAG
POU4F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	78	93	+	9.01818	3.37e-05	1	CTGCATAATAGAGAAG
POU4F2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	78	93	+	9.01818	3.37e-05	1	CTGCATAATAGAGAAG
Nr2e1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	56	64	-	12.4516	3.37e-05	1	AAAAGTCAT
Nr2e1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	73	81	+	12.4516	3.37e-05	1	AAAAGTCAT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	22	42	-	10.9796	3.37e-05	0.0131	AGGAAAGGGGGGGGGAAAAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	35	55	-	10.9796	3.37e-05	0.0131	CGGGGAGGCCGGGGCGGGGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	49	69	-	10.9796	3.37e-05	0.0131	AGATAAAGAGGAAGGGGTGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	66	86	-	10.9796	3.37e-05	0.0131	CAGGAAGGAGGGAGAGATGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	67	87	-	10.9796	3.37e-05	0.0131	GGAAAAGTGGAGGGGGGTGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	67	87	-	10.9796	3.37e-05	0.0131	GGAAAAGTGGAGGGGGGTGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	29	49	+	10.9796	3.37e-05	0.0131	CAGGAAGGAGGGAGAGATGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	30	50	+	10.9796	3.37e-05	0.0131	GGGGAGGGGGGGGGAGAAGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	30	50	+	10.9796	3.37e-05	0.0131	GGGGAGGGGGGGGGAGAAGGC
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	46	66	+	10.9796	3.37e-05	0.0131	AGATAAAGAGGAAGGGGTGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	56	76	+	10.9796	3.37e-05	0.0131	GAGTGAGCGAGAGAGAAAGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	58	78	+	10.9796	3.37e-05	0.0131	GGAAAAGTGGAGGGGGGTGGG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	60	80	+	10.9796	3.37e-05	0.0131	CGGGGAGGCCGGGGCGGGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	64	84	+	10.9796	3.37e-05	0.0131	GGAGAGGGAGGAGGGGAAGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	84	104	+	10.9796	3.37e-05	0.0131	GAGTGAGCGAGAGAGAAAGAG
PBX1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	18	29	+	12.2653	3.37e-05	1	GGATCAATCATC
PBX1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	86	97	-	12.2653	3.37e-05	1	GGATCAATCATC
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	12	28	+	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	12	28	+	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	12	28	+	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	12	28	+	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	87	103	+	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	12	28	-	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
PAX1	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	87	103	-	7.89091	3.37e-05	0.51	CGTCACGCGACGCTGGC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	65	76	-	12.1286	3.37e-05	0.217	TGCGCCCCCCGG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	39	50	+	12.1286	3.37e-05	0.217	TGCGCCCCCCGG
NFIL3	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	73	83	-	12.6869	3.37e-05	1	TGATGTAACCT
NFIA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	26	35	+	12.6667	3.37e-05	1	CTTGCCAAGA
NFIA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	26	35	+	12.6667	3.37e-05	1	CTTGCCAAGA
Gmeb1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	32	48	+	11.2763	3.37e-05	0.584	CCGCTGACGTAACCTGC
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	73	89	+	11.2763	3.37e-05	0.584	CCGCTGACGTAACCTGC
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	26	42	-	11.2763	3.37e-05	0.584	CCGCTGACGTAACCTGC
Gmeb1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	67	83	-	11.2763	3.37e-05	0.584	CCGCTGACGTAACCTGC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	28	48	+	7	3.37e-05	0.208	GGCGGGACCGGAGCGAGAGCC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	28	48	+	7	3.37e-05	0.208	GGCGGGACCGGAGCGAGAGCC
Hoxd8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	44	60	+	11.9048	3.37e-05	1	GTCATAATTAATTGCGA
Hoxd8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	44	60	+	11.9048	3.37e-05	1	GTCATAATTAATTGCGA
Hoxd8	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	55	71	-	11.9048	3.37e-05	1	GTCATAATTAATTGCGA
DUX4	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	33	43	+	12.234	3.38e-05	1	TGATCCAATCA
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	66	79	+	11.9859	3.38e-05	0.214	AGAAAGAGGAAACA
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	66	79	+	11.9859	3.38e-05	0.214	AGAAAGAGGAAACA
STAT1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	31	41	-	11.9455	3.38e-05	0.272	TTTCTAAGAAA
STAT1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	102	112	-	11.9455	3.38e-05	0.272	TTTCTAAGAAA
STAT1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	3	13	+	11.9455	3.38e-05	0.272	TTTCTAAGAAA
STAT1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	74	84	+	11.9455	3.38e-05	0.272	TTTCTAAGAAA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	+	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	+	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	+	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	+	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	-	12.3818	3.38e-05	0.0665	CGCCGCCGGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	29	42	-	11.6923	3.38e-05	0.0165	CTCCCTCCTCCAGC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	43	56	+	11.6923	3.38e-05	0.0165	CTCCCTCCTCCAGC
EGR1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	70	83	+	11.6923	3.38e-05	0.0165	TCTCCTCCTCCTCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	81	94	+	11.6923	3.38e-05	0.0165	CTCACTCCTCCTCC
THAP1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	27	35	+	10.6053	3.38e-05	0.207	CTGCCCGAA
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	24	38	-	9.88571	3.38e-05	0.101	CCCCCCCCGCCGCCG
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	56	-	4.3617	3.38e-05	0.48	TGGGTCGGAGGTTA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	56	-	4.3617	3.38e-05	0.48	TGGGTCGGAGGTTA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	56	-	4.3617	3.38e-05	0.48	TGGGTCGGAGGTTA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	56	-	4.3617	3.38e-05	0.48	TGGGTCGGAGGTTA
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	69	80	-	12.0769	3.38e-05	0.19	TAAAATGGATGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	69	80	-	12.0769	3.38e-05	0.19	TAAAATGGATGC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	13	32	-	5.94495	3.38e-05	0.0513	TCAAAAACCACCAACTAACC
GBX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	11.6809	3.38e-05	1	GCCAATTACC
GBX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	11.6809	3.38e-05	1	GCCAATTACC
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	42	53	+	6.9878	3.38e-05	0.631	CTTCCCGTCAAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	42	53	+	6.9878	3.38e-05	0.631	CTTCCCGTCAAC
E2F8	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	62	73	-	6.9878	3.38e-05	0.631	CTTCCCGTCAAC
E2F8	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	94	105	-	6.9878	3.38e-05	0.631	CTTCTGGCCAAA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	15	31	+	5.47541	3.38e-05	0.563	AGGTCACCGCAGGGGAA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	15	31	+	5.47541	3.38e-05	0.563	AGGTCACCGCAGGGGAA
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	17	-	10.9636	3.38e-05	0.0999	ATGGCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	17	-	10.9636	3.38e-05	0.0999	ATGGCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	61	72	+	10.9636	3.38e-05	0.0999	CTACCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	61	72	+	10.9636	3.38e-05	0.0999	CTACCGGAAGTT
ELF1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	98	109	+	10.9636	3.38e-05	0.0999	ATGGCGGAAGTG
ELF4	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	63	74	+	10.8033	3.38e-05	0.0949	GACCCGGTAGTG
GLIS1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	15	30	+	-5.69231	3.38e-05	0.329	GCACCCCCCTCGTTTT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	10	19	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	10	19	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	10	19	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	10	19	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	13	22	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	26	35	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	-	12.4423	3.38e-05	0.131	GTCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	84	93	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	84	93	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	100	109	+	12.4423	3.38e-05	0.131	CTCACATGAC
TFEB	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	93	102	-	12.4423	3.38e-05	0.131	CTCACATGAC
SRF	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	18	33	+	7.37705	3.38e-05	0.65	GCTCCTTATTTGGGCA
SRF	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	73	88	-	7.37705	3.38e-05	0.65	GCTCCTTATTTGGGCA
ELK4	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	71	-	12.4545	3.38e-05	0.052	CTACTTCCTGT
ELK4	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	44	54	+	12.4545	3.38e-05	0.052	CTACTTCCTGT
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	47	56	+	12.2	3.38e-05	0.09	ACGGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	63	72	-	12.2	3.38e-05	0.09	ACGGGAAGTG
Nr2f6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	36	-	10.2121	3.38e-05	0.295	TGGGGCAGAGGCCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	36	-	10.2121	3.38e-05	0.295	TGGGGCAGAGGCCA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	94	107	+	10.2121	3.38e-05	0.295	TGGGGCAGAGGCCA
EMX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	11.7872	3.38e-05	1	GCCAATTAGC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	56	66	+	11.6727	3.38e-05	0.0143	GCCCCCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	65	75	+	11.6727	3.38e-05	0.0143	GCCCCCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	31	41	-	11.6727	3.38e-05	0.0143	CCGGGTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	40	50	-	11.6727	3.38e-05	0.0143	GCCCCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	42	52	-	11.6727	3.38e-05	0.0143	GCCCCCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	42	52	-	11.6727	3.38e-05	0.0143	GCCCCCGCGCG
ERG	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	12.4182	3.38e-05	0.102	TCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	12.4182	3.38e-05	0.102	TCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	12.4182	3.38e-05	0.102	TCCGGAAGTT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	+	11.8033	3.38e-05	0.0641	TCCCCTGACGGGA
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	4	13	+	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	16	25	+	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	23	32	+	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	26	35	+	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	31	40	+	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	36	45	+	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	64	73	+	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	70	79	+	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	82	91	+	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	12	21	-	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	24	33	-	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	34	43	-	11.8349	3.38e-05	0.0477	CCCCTCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	61	70	-	11.8349	3.38e-05	0.0477	CGCCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	80	89	-	11.8349	3.38e-05	0.0477	CGCCCCCCAC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	39	56	+	-10.7895	3.38e-05	0.0349	GAAGAGGAGGAGGGAGAG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	47	64	+	-10.7895	3.38e-05	0.0349	GAAGAGGAGGAGGGAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	94	111	+	-10.7895	3.38e-05	0.0349	GGGCGGGAAGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	46	63	-	-10.7895	3.38e-05	0.0349	GGGAAGAAGGACGCTGAG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	51	68	-	-10.7895	3.38e-05	0.0349	GAAGAGGAGGAGGGAGAG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	59	76	-	-10.7895	3.38e-05	0.0349	GAAGAGGAGGAGGGAGAG
Creb5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	21	32	+	10.6909	3.38e-05	0.162	AGTGACATCACC
Creb5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	65	76	+	10.6909	3.38e-05	0.162	AGTGACATCACC
Creb5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	39	50	-	10.6909	3.38e-05	0.162	AGTGACATCACC
Creb5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	83	94	-	10.6909	3.38e-05	0.162	AGTGACATCACC
MSC	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	25	34	+	11.8537	3.39e-05	0.569	GACAGCTGAT
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	81	90	-	12.2449	3.39e-05	0.8	CGAAGGTCAG
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	81	90	-	12.2449	3.39e-05	0.8	CGAAGGTCAG
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	81	90	-	12.2449	3.39e-05	0.8	CGAAGGTCAG
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	81	90	-	12.2449	3.39e-05	0.8	CGAAGGTCAG
TBX20	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	33	43	-	12.0455	3.39e-05	1	AAGTTGTGATG
KLF14	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	7	20	-	10.5517	3.39e-05	0.0274	GCCCGCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	33	46	+	10.5517	3.39e-05	0.0274	GACCCCGCCTCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	33	46	+	10.5517	3.39e-05	0.0274	GACCCCGCCTCCCG
KLF14	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	23	36	-	10.5517	3.39e-05	0.0274	TGCCCCGCCCTCAC
KLF14	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	32	45	-	10.5517	3.39e-05	0.0274	TGCCCCGCCCCGCC
KLF14	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	44	57	-	10.5517	3.39e-05	0.0274	GCCCGCGCCCCTTC
KLF14	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	58	71	+	10.5517	3.39e-05	0.0274	GCCCGCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	64	77	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	64	77	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	64	77	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	60	73	-	10.5517	3.39e-05	0.0274	CGCCCCACCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	60	73	-	10.5517	3.39e-05	0.0274	CGCCCCACCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	79	92	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCTCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	79	92	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCTCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	79	92	+	10.5517	3.39e-05	0.0274	TGCCCCGCCCTCAC
KLF14	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	95	108	+	10.5517	3.39e-05	0.0274	GCCCGCGCCCCTTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	11	25	+	11.8276	3.39e-05	0.00944	TTCCCGCCCAGTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	24	38	-	11.8276	3.39e-05	0.00944	CCTCCGCCCCTAGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	24	38	-	11.8276	3.39e-05	0.00944	CCTCCGCCCCTAGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	24	38	-	11.8276	3.39e-05	0.00944	CCTCCGCCCCTAGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	24	38	-	11.8276	3.39e-05	0.00944	CCTCCGCCCCTAGCA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	95	109	+	10.9286	3.39e-05	0.108	CGAGGGGGGAGGTAA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	3	16	+	12.5769	3.39e-05	0.187	TCTGGGTGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	3	16	+	12.5769	3.39e-05	0.187	TCTGGGTGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	27	40	-	12.5769	3.39e-05	0.187	TCTGGGTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	41	54	+	12.5769	3.39e-05	0.187	ACACAGTGAGTCAG
IRF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	61	74	-	10.3871	3.39e-05	0.664	AAGAAAGCAAAACA
SP1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	4	14	+	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	17	27	+	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	17	27	+	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	22	32	+	12.3269	3.39e-05	0.0108	GCTCCGCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	22	32	+	12.3269	3.39e-05	0.0108	GCTCCGCCTCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	20	30	-	12.3269	3.39e-05	0.0108	ACCCCGCCCAT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	20	30	-	12.3269	3.39e-05	0.0108	ACCCCGCCCAT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	20	30	-	12.3269	3.39e-05	0.0108	ACCCCGCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	20	30	-	12.3269	3.39e-05	0.0108	ACCCCGCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	26	36	-	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	26	36	-	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
SP1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	101	111	-	12.3269	3.39e-05	0.0108	TCCCCGCCCTG
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	3	15	-	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
NFKB1	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	100	112	+	4.83673	3.39e-05	0.233	TGGTGATTTCCCA
HOXA10	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	66	+	11.5472	3.39e-05	1	GGCAATTAAAG
Gabpa	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	45	55	+	12.3115	3.39e-05	0.0487	CCGGAACTGAC
Gabpa	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	60	70	-	12.3115	3.39e-05	0.0487	CCGGAACTGAC
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	56	67	+	12.0345	3.39e-05	0.365	GCAACCCCCTAC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	71	82	+	12.0345	3.39e-05	0.365	GCGCCCCCCGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	14	24	+	12.4828	3.39e-05	0.0451	GGGCGGGAGTT
IRF2	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	43	60	-	7.53211	3.39e-05	0.6	CGGAAATGAAACTGTTCT
Myog	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	38	+	13.0408	3.39e-05	0.131	GACAGGTGCGC
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	38	+	13.0408	3.39e-05	0.131	GACAGGTGCGC
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	38	+	13.0408	3.39e-05	0.131	GACAGGTGCGC
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	38	+	13.0408	3.39e-05	0.131	GACAGGTGCGC
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	38	+	13.0408	3.39e-05	0.131	GACAGGTGCGC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	64	74	-	11.7818	3.39e-05	0.225	AACAGGATGTT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	-	11.6724	3.39e-05	0.0554	TGCCGGCAGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	-	11.6724	3.39e-05	0.0554	TGCCGGCAGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	-	11.6724	3.39e-05	0.0554	TGCCGGCAGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	-	11.6724	3.39e-05	0.0554	TGCCGGCAGGGCC
MYBL1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	100	111	-	11.569	3.39e-05	1	GCCGTTAGCGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	10.1346	3.39e-05	0.145	GCCACGTGAC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	10.1346	3.39e-05	0.145	GCCACGTGAC
FOXB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	83	93	-	12.2308	3.39e-05	1	AATGTAAACAG
FOXB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	83	93	-	12.2308	3.39e-05	1	AATGTAAACAG
Rhox11	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	42	58	+	12.1974	3.39e-05	1	CCGGAGCTGTAAAGCCC
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	12	28	-	11.2347	3.39e-05	0.338	GGGGGAGGGGGCGGACA
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	44	+	5.75862	3.39e-05	0.189	AGTCACGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	44	+	5.75862	3.39e-05	0.189	AGTCACGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	64	+	5.75862	3.39e-05	0.189	AGTCACGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	64	+	5.75862	3.39e-05	0.189	AGTCACGTGCCC
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	66	80	+	11.8649	3.39e-05	0.158	GCAGGGGAAGGGGCG
POU3F3	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	20	32	+	11.98	3.4e-05	1	TTTATGCAGATGT
SP8	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	6	17	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	12	23	+	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	12	23	+	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	1	12	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	12	23	+	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	12	23	+	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	1	12	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	1	12	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	1	12	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	24	35	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	24	35	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	41	52	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	44	55	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	46	57	-	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	58	69	+	11.9868	3.4e-05	0.025	GCCACGCCCGGC
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	60	71	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	50	61	-	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	65	76	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	65	76	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	65	76	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	65	76	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	103	114	+	11.9868	3.4e-05	0.025	GCCCCGCCCTCC
SP8	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	92	103	-	11.9868	3.4e-05	0.025	GCCACGCCCGGC
HES5	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	107	-	5.5	3.4e-05	0.296	GGCCACGTGGCG
HES5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	19	+	5.5	3.4e-05	0.296	GGCCACGTGGCG
HES5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	19	+	5.5	3.4e-05	0.296	GGCCACGTGGCG
HES5	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	98	109	+	5.5	3.4e-05	0.296	TCCCACGTGTCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	52	66	-	8.53448	3.4e-05	0.0347	GGCCGCCCCCTCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	52	66	-	8.53448	3.4e-05	0.0347	GGCCGCCCCCTCCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	52	66	-	8.53448	3.4e-05	0.0347	GGCCGCCCCCTCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	16	26	+	11.8276	3.4e-05	0.0144	GACACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	16	26	+	11.8276	3.4e-05	0.0144	GACACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	33	+	11.8276	3.4e-05	0.0144	GCCCCTCCCAT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	33	+	11.8276	3.4e-05	0.0144	GCCCCTCCCAT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	22	32	-	11.8276	3.4e-05	0.0144	GCCCCTCCCAT
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	48	58	+	11.8276	3.4e-05	0.0144	GCCACTCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	65	+	11.8276	3.4e-05	0.0144	GCCCCTCCCAT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	65	+	11.8276	3.4e-05	0.0144	GCCCCTCCCAT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	57	67	-	11.8276	3.4e-05	0.0144	GCCACTCCCTC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	57	67	-	11.8276	3.4e-05	0.0144	GCCACTCCCTC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	57	67	-	11.8276	3.4e-05	0.0144	GCCACTCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	57	67	-	11.8276	3.4e-05	0.0144	GCCACTCCCTC
GCM2	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	13	22	-	12.2295	3.4e-05	0.718	TGTGCGGGTT
SP4	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	30	46	+	6.27273	3.4e-05	0.0214	CCTGCCCCTCCCCTCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	32	48	+	6.27273	3.4e-05	0.0214	GAGGCTCCTCCCCCGCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	31	47	-	6.27273	3.4e-05	0.0214	GGGGCACCGCCCCCTCA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	23	40	-	-10.8026	3.4e-05	0.035	GAGAGCAGGGGGGGAAGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	64	81	-	-10.8026	3.4e-05	0.035	AGAAGGGAGGAGGGGAGA
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	11	20	+	11.5051	3.4e-05	0.908	AATTTCCATT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	11	20	+	11.5051	3.4e-05	0.908	AATTTCCATT
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	6	13	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	6	13	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	8	15	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	9	16	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	9	16	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	14	21	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	8	15	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	27	34	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	27	34	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	31	38	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	33	40	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	33	40	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	33	40	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	34	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	36	43	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	52	59	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	52	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	52	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	52	59	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	52	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	61	68	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	62	69	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	62	69	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	56	63	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	63	70	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	65	72	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	77	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	79	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	79	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	79	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	79	-	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	91	98	+	13.377	3.4e-05	0.275	GCACGTGG
Mlxip	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	94	101	-	13.377	3.4e-05	0.275	GCACGTGG
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	44	54	+	12.065	3.4e-05	0.0169	CACCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	65	75	+	12.065	3.4e-05	0.0169	CACCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	65	75	+	12.065	3.4e-05	0.0169	CACCCACCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	2	12	-	12.065	3.4e-05	0.0169	ACCACGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	48	58	-	12.065	3.4e-05	0.0169	CACCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	64	74	-	12.065	3.4e-05	0.0169	CACCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	70	80	-	12.065	3.4e-05	0.0169	CACCCACCCCC
EHF	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	26	37	+	11.6721	3.4e-05	0.118	TGGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	81	92	+	11.6721	3.4e-05	0.118	ACACCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	81	92	+	11.6721	3.4e-05	0.118	ACACCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	81	92	+	11.6721	3.4e-05	0.118	ACACCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	81	92	+	11.6721	3.4e-05	0.118	ACACCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	89	-	11.6721	3.4e-05	0.118	TGGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	89	-	11.6721	3.4e-05	0.118	TGGCCGGAAGTG
EBF1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	31	44	-	10.8361	3.4e-05	0.365	GCTCCCCTGGGTCT
EBF1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	71	84	+	10.8361	3.4e-05	0.365	GCTCCCCTGGGTCT
ETV5	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	11.8545	3.4e-05	0.0835	ACCGGAAATA
NFIX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	26	34	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	26	34	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	41	49	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	41	49	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	41	49	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	53	61	+	10.617	3.4e-05	0.758	CTTGCCAAG
NFIX	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	99	107	-	10.617	3.4e-05	0.758	CTTGCCAAG
CREB3L1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	33	46	+	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
CREB3L1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	33	46	+	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
CREB3L1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	33	46	+	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
CREB3L1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	33	46	+	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
CREB3L1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	33	46	+	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
CREB3L1	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	69	82	-	10.2727	3.41e-05	0.253	GTACCACGTTAGCA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	95	107	+	12.9796	3.41e-05	0.143	CGCACCTGTCATG
Rarb(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	38	54	-	0.469697	3.41e-05	0.785	GGTTCAGTGTGACGTCA
Rarb(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	43	59	-	0.469697	3.41e-05	0.785	GGTTCAGTGTGACGTCA
Rarb(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	56	72	+	0.469697	3.41e-05	0.785	GGTTCAGTGTGACGTCA
Rarb(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	61	77	+	0.469697	3.41e-05	0.785	GGTTCAGTGTGACGTCA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	7	22	-	11.5091	3.41e-05	0.0374	CTCCGCCCACCTCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	7	22	-	11.5091	3.41e-05	0.0374	CTCCGCCCACCTCCCT
EGR4	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	24	39	-	11.5091	3.41e-05	0.0374	CTCCGCCCACCTCCCT
EGR4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	28	43	-	11.5091	3.41e-05	0.0374	TCCCCCCCACCCCTCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	67	82	+	11.5091	3.41e-05	0.0374	TCCCTCCCTCGCCCTC
EGR4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	72	87	+	11.5091	3.41e-05	0.0374	TCCCCCCCACCCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	76	91	+	11.5091	3.41e-05	0.0374	CTCCGCCCACCTCCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	76	91	+	11.5091	3.41e-05	0.0374	CTCCGCCCACCTCCCT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	21	+	5.91743	3.41e-05	0.0514	TCCCCCCCCCCCCCCCCCAG
Nr2f6(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	94	108	+	-2.27143	3.41e-05	0.707	AAGGTGGAGAGGTCG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	51	68	-	6.94828	3.41e-05	0.213	AAGCAAGGCCCATAGTTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	8	28	-	10.9592	3.41e-05	0.0133	GGGAGCGAGGGAGGGAGGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	69	89	-	10.9592	3.41e-05	0.0133	GGGGCAAGGGAAGTGGAAGAG
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	49	59	+	12.5192	3.41e-05	0.273	AGTCTGAGTCA
BATF::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	56	66	-	12.5192	3.41e-05	0.273	AGTCTGAGTCA
JUN	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	27	39	+	12.1224	3.41e-05	0.301	GCGGTGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	73	85	+	12.1224	3.41e-05	0.301	GCGGTGACGTCAC
JUN	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	30	42	-	12.1224	3.41e-05	0.301	GCGGTGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	76	88	-	12.1224	3.41e-05	0.301	GCGGTGACGTCAC
TBR1	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	80	89	-	12.2553	3.41e-05	0.898	AGGTGTGACT
TBR1	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	26	35	+	12.2553	3.41e-05	0.898	AGGTGTGACT
KLF14	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	17	30	+	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	10	23	-	10.5345	3.41e-05	0.0274	GGCTCCGCCCCATT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	24	37	-	10.5345	3.41e-05	0.0274	GGCCCCACCCCTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	24	37	-	10.5345	3.41e-05	0.0274	GGCCCCACCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	24	37	-	10.5345	3.41e-05	0.0274	GGCCCCACCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	24	37	-	10.5345	3.41e-05	0.0274	GGCCCCACCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	32	45	-	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	32	45	-	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	32	45	-	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	32	45	-	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	70	83	+	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
KLF14	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	85	98	-	10.5345	3.41e-05	0.0274	CGGCCCGCCCCCAC
ATF4	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	20	32	+	11.3607	3.41e-05	0.506	ATCTGATGAAATA
ATF4	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	40	52	+	11.3607	3.41e-05	0.506	ATCTGATGAAATA
ATF4	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	63	75	-	11.3607	3.41e-05	0.506	ATCTGATGAAATA
ATF4	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	83	95	-	11.3607	3.41e-05	0.506	ATCTGATGAAATA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	-	12.2545	3.41e-05	0.0548	TGCCTGCCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	-	12.2545	3.41e-05	0.0548	TGCCTGCCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	-	12.2545	3.41e-05	0.0548	TGCCTGCCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	-	12.2545	3.41e-05	0.0548	TGCCTGCCGGCA
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	82	96	-	11.1364	3.41e-05	0.288	TCAGTTGCCATTTCT
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	12	25	+	11.6731	3.41e-05	0.0165	CCGCCGCCGCTGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	27	40	-	11.6731	3.41e-05	0.0165	CCTCCACCGCCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	50	63	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCCGTT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	50	63	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCCGTT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	50	63	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCCGTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	50	63	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCCGTT
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	90	103	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	94	107	-	11.6731	3.41e-05	0.0165	CCGCCGCCGCTGCC
Spz1	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	28	38	-	12.1364	3.41e-05	0.748	AGGGAAACAGG
KLF5	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	81	90	-	12.6122	3.41e-05	0.0155	ACCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	20	+	12.6122	3.41e-05	0.0155	ACCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	16	25	+	12.6122	3.41e-05	0.0155	ACCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	16	25	+	12.6122	3.41e-05	0.0155	ACCCCTCCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	25	34	+	12.6122	3.41e-05	0.0155	ACCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	72	+	12.6122	3.41e-05	0.0155	ACCCCTCCCA
LEF1	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	81	95	-	10.371	3.41e-05	1	CAAGTTCAAAGAATC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	56	66	+	11.6545	3.41e-05	0.0144	GCACCCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	56	66	+	11.6545	3.41e-05	0.0144	GCACCCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	57	67	-	11.6545	3.41e-05	0.0144	GCACCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	57	67	-	11.6545	3.41e-05	0.0144	GCACCCGCGCA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	26	40	+	12.2128	3.41e-05	0.311	TCACGTGACGTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	26	40	+	12.2128	3.41e-05	0.311	TCACGTGACGTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	26	40	+	12.2128	3.41e-05	0.311	TCACGTGACGTCATG
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	17	31	-	12.2128	3.41e-05	0.311	GGAAATGATGTAAGT
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	84	98	+	12.2128	3.41e-05	0.311	GGAAATGATGTAAGT
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	4	15	-	12.08	3.41e-05	1	ATGATGCAAATG
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	4	15	-	12.08	3.41e-05	1	ATGATGCAAATG
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	18	29	+	12.08	3.41e-05	1	ATGATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	18	29	+	12.08	3.41e-05	1	ATGATGCAAATG
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	98	109	-	12.08	3.41e-05	1	ATGATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	98	109	-	12.08	3.41e-05	1	ATGATGCAAATG
ELK4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	8	18	-	12.4	3.41e-05	0.052	CGGCTTCCTGC
ELK4	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	45	55	-	12.4	3.41e-05	0.052	CGGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	60	70	+	12.4	3.41e-05	0.052	CGGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	60	70	+	12.4	3.41e-05	0.052	CGGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	61	71	+	12.4	3.41e-05	0.052	AGACTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	61	71	+	12.4	3.41e-05	0.052	AGACTTCCGGG
ELK4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	97	107	+	12.4	3.41e-05	0.052	CGGCTTCCTGC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	12.3621	3.41e-05	0.0977	ACCGGAAGAA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	12.3621	3.41e-05	0.0977	ACCGGAAGAA
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	6	20	-	11.6818	3.41e-05	0.0907	TTCCCGCGGGGCGCG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	29	43	-	11.6818	3.41e-05	0.0907	TTCCCGCGGGGCGCG
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	72	86	+	11.6818	3.41e-05	0.0907	TTCCCGCGGGGCGCG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	95	109	+	11.6818	3.41e-05	0.0907	TTCCCGCGGGGCGCG
Hes1	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	8	17	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	17	26	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	17	26	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	18	27	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	18	27	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	18	27	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	22	31	-	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	55	64	+	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	89	98	+	10.4545	3.41e-05	0.0834	CCCACGCGGC
Hes1	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	98	107	+	10.4545	3.41e-05	0.0834	CCCACGCGGC
Creb5	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	32	43	+	10.6727	3.41e-05	0.163	GATGATGTCATG
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	+	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	-	12.2	3.41e-05	0.744	GTGGCGCAAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	-	12.2	3.41e-05	0.744	GTGGCGCAAT
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	10	24	-	11.6909	3.41e-05	0.308	TGAGAGGGAAAGCCC
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	23	39	+	-2.70787	3.41e-05	0.939	AGAGGTCAGAGTTCAGA
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	53	69	-	-2.70787	3.41e-05	0.939	AGAGGTCAGAGTTCAGA
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	90	98	-	12.6182	3.42e-05	1	ACCACTTAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	67	75	-	10.569	3.42e-05	0.243	ATGTCTCAT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	67	81	+	11.6452	3.42e-05	1	CTTTCTGATGCCAAA
CENPB	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	49	63	-	11.7308	3.42e-05	0.822	TCCGGATCCCACGCA
PKNOX2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	34	45	-	5.67213	3.42e-05	0.598	TGACTTGTGTCG
PKNOX2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	70	81	+	5.67213	3.42e-05	0.598	TGACTTGTGTCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	29	43	+	8.51724	3.42e-05	0.0347	CCCCGCCCCCGGGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	29	43	+	8.51724	3.42e-05	0.0347	CCCCGCCCCCGGGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	72	+	8.51724	3.42e-05	0.0347	CCCCCCCCCCGCCGC
JUND	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	27	37	-	12.383	3.42e-05	0.182	TATGACTCAGG
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	12.3788	3.42e-05	1	GGCATATGTT
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	12.3788	3.42e-05	1	GGCATATGTT
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	63	76	-	9.32857	3.42e-05	0.149	AAATTACGTAACGC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	23	37	-	9.85714	3.42e-05	0.101	GCCTCCCTCCGGCGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	23	37	-	9.85714	3.42e-05	0.101	GCCTCCCTCCGGCGC
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	12.3621	3.42e-05	0.0999	ACCGGATATG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	12.3621	3.42e-05	0.0999	ACCGGATATG
ETV4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.3621	3.42e-05	0.0999	TCCGGAAGTC
ETV4	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	12.3621	3.42e-05	0.0999	TCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.3621	3.42e-05	0.0999	CCCGGAAGTG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	20	30	+	12.6909	3.42e-05	0.154	GTATGAGTCAC
SP2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	8	22	+	11.8103	3.42e-05	0.00951	ACCCCACCTCCGACG
SP2	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	34	48	+	11.8103	3.42e-05	0.00951	CTCCCACCCTCGGGC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	44	58	+	11.8103	3.42e-05	0.00951	CTCCCTCCCTCCGCA
SP2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	90	104	+	11.8103	3.42e-05	0.00951	ACCCCACCTCCGACG
SP2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	11	25	-	11.8103	3.42e-05	0.00951	ACCCCACCTCCGACG
SP2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	93	107	-	11.8103	3.42e-05	0.00951	ACCCCACCTCCGACG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	31	+	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	31	+	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	31	+	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	31	+	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	85	+	12.0569	3.42e-05	0.0169	GCACCGCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	18	28	-	12.0569	3.42e-05	0.0169	GCACCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	27	37	-	12.0569	3.42e-05	0.0169	GCACCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	30	40	-	12.0569	3.42e-05	0.0169	GCACCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	30	40	-	12.0569	3.42e-05	0.0169	GCACCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	40	50	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	40	50	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	40	50	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	40	50	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	55	65	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	55	65	-	12.0569	3.42e-05	0.0169	ACCCCGCCCAG
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	98	111	-	10.8197	3.42e-05	0.365	ACCCTCCAGGGACT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	98	111	-	10.8197	3.42e-05	0.365	ACCCTCCAGGGACT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	98	111	-	10.8197	3.42e-05	0.365	ACCCTCCAGGGACT
Zfx	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	13	26	-	12.2273	3.42e-05	0.0455	GCCGCCGCAGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	89	102	+	12.2273	3.42e-05	0.0455	GCCGCCGCAGCCTC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	2	13	+	10.7869	3.42e-05	0.0958	CTTCCGGAAGTT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	-	11.6379	3.42e-05	0.0554	CGCCCACCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	-	11.6379	3.42e-05	0.0554	CGCCCACCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	+	11.6379	3.42e-05	0.0554	AGCCCGCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	+	11.6379	3.42e-05	0.0554	AGCCCGCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	+	11.6379	3.42e-05	0.0554	AGCCCGCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	+	11.6379	3.42e-05	0.0554	AGCCCGCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	+	11.6379	3.42e-05	0.0554	AGCCCGCCCGGCA
ELF3	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	37	49	+	10.1207	3.42e-05	0.134	GACCCGGAAACAG
ELF3	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	66	78	-	10.1207	3.42e-05	0.134	GACCCGGAAACAG
E2F8	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	3	14	+	6.96341	3.43e-05	0.631	TTTCGCGCCGAA
E2F8	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	101	112	-	6.96341	3.43e-05	0.631	TTTCGCGCCGAA
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	41	53	+	4.79592	3.43e-05	0.233	GGGGGAACCCCTC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	21	31	+	12.6735	3.43e-05	0.18	GGCTGACTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	41	51	-	12.6735	3.43e-05	0.18	GGCTGACTCAT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	2	21	-	5.89908	3.43e-05	0.0514	ACCCCCCCCCCCCCTCCCGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	2	21	-	5.89908	3.43e-05	0.0514	ACCCCCCCCCCCCCTCCCGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	13	32	+	5.89908	3.43e-05	0.0514	CTCCTCACCACACCACCCCC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	62	82	+	10.5968	3.43e-05	0.162	TTCCACTTTTGCTTCTTCCTC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	62	82	+	10.5968	3.43e-05	0.162	TTCCACTTTTGCTTCTTCCTC
ETV1	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	12.3273	3.43e-05	0.0953	TCCGGAAGTC
ETV1	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.3273	3.43e-05	0.0953	TCCGGAAGCG
ETV1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	12.3273	3.43e-05	0.0953	TCCGGAAGTC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.3273	3.43e-05	0.0953	TCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.3273	3.43e-05	0.0953	TCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.3273	3.43e-05	0.0953	TCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	12.3273	3.43e-05	0.0953	TCCGGAAGTC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	12.3273	3.43e-05	0.0953	TCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	12.3273	3.43e-05	0.0953	TCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	12.3273	3.43e-05	0.0953	TCCGGAAGTC
NHLH1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	21	+	12.2069	3.43e-05	0.117	CGCACCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	103	-	12.2069	3.43e-05	0.117	CGCACCTGTG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	103	-	12.2069	3.43e-05	0.117	CGCACCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	103	-	12.2069	3.43e-05	0.117	CGCACCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	103	-	12.2069	3.43e-05	0.117	CGCACCTGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	14	23	+	11.9362	3.43e-05	0.0771	GCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	14	23	+	11.9362	3.43e-05	0.0771	GCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	14	23	+	11.9362	3.43e-05	0.0771	GCCGGAACTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	14	23	+	11.9362	3.43e-05	0.0771	GCCGGAACTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	85	94	+	11.9362	3.43e-05	0.0771	GCCGGAACTG
ZNF143	WILDTYPE__mrna.flip.sense__chr10:6622203..6622317,-__1147.1.0.0	9	24	+	4.2069	3.43e-05	0.299	CACCCGCAGTGCGCCG
ZNF143	FLIPPED__mrna.flip.antisense__chr10:6622203..6622317,+__2478.1.0.0	91	106	-	4.2069	3.43e-05	0.299	CACCCGCAGTGCGCCG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	12	22	-	12.5	3.43e-05	0.273	GTGCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	12	22	-	12.5	3.43e-05	0.273	GTGCTGAGTCA
HNF4G	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	52	66	+	11.9423	3.43e-05	0.335	CCAGGGCAGGGTTCA
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	29	38	-	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	4	13	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	4	13	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	4	13	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	4	13	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	56	65	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	56	65	+	11.8387	3.43e-05	0.888	TGCATTCCTT
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	81	90	+	11.8387	3.43e-05	0.888	TGCATTCCTT
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	41	-	10.1818	3.43e-05	0.296	GGGGTCAGAAGTCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	1	13	+	11.8525	3.43e-05	0.0586	TCCCTGGAGGGCT
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	-	11.8525	3.43e-05	0.0586	CGCCCGCGAGGCG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	102	114	-	11.8525	3.43e-05	0.0586	TCCCTGGAGGGCT
POU4F1	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	22	35	+	11.9213	3.43e-05	1	ATGCGTAATTTATG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	14	27	+	10.5172	3.43e-05	0.0274	TCCCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	14	27	+	10.5172	3.43e-05	0.0274	TCCCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	23	36	+	10.5172	3.43e-05	0.0274	CGCCCCGCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	23	36	+	10.5172	3.43e-05	0.0274	CGCCCCGCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	29	42	-	10.5172	3.43e-05	0.0274	CAGCCCGCCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	29	42	-	10.5172	3.43e-05	0.0274	CAGCCCGCCCACTC
KLF14	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	73	86	+	10.5172	3.43e-05	0.0274	CAGCCCGCCCACTC
MLX	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	11.7143	3.43e-05	0.211	AGCACGTGGC
MLX	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	+	11.7143	3.43e-05	0.211	TTCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	11.7143	3.43e-05	0.211	AGCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	11.7143	3.43e-05	0.211	AGCACGTGGC
MLX	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	11.7143	3.43e-05	0.211	AGCACGTGGC
MYF6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	98	107	+	12.0758	3.43e-05	1	AACAAGTGTC
MYF6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	98	107	+	12.0758	3.43e-05	1	AACAAGTGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	81	92	+	11.6557	3.43e-05	0.118	TTCCAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	81	92	+	11.6557	3.43e-05	0.118	TTCCAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	101	112	+	11.6557	3.43e-05	0.118	TTCCAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	101	112	+	11.6557	3.43e-05	0.118	TTCCAGGAAGTT
ESX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	10.4583	3.43e-05	1	GCCAATTAGA
ESX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	10.4583	3.43e-05	1	GCCAATTAGG
ESX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	10.4583	3.43e-05	1	GCCAATTAGA
Tcf21	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	27	40	-	8.67105	3.43e-05	0.56	TGCACAGCTGTTTC
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	87	98	-	12.2277	3.43e-05	1	TGAGCAAACAAA
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	87	98	-	12.2277	3.43e-05	1	TGAGCAAACAAA
NRL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	6	16	-	11.4231	3.43e-05	0.776	TATTTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	6	16	-	11.4231	3.43e-05	0.776	TATTTGCTGAT
SP4	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	92	108	+	6.23636	3.43e-05	0.0216	GTGCCCCCGCCTCCTTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	7	23	-	6.23636	3.43e-05	0.0216	GTGCCCCCGCCTCCTTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	7	23	-	6.23636	3.43e-05	0.0216	GTGCCCCCGCCTCCTTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	7	23	-	6.23636	3.43e-05	0.0216	GTGCCCCCGCCTCCTTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	7	23	-	6.23636	3.43e-05	0.0216	GTGCCCCCGCCTCCTTG
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	10	24	+	11.2121	3.43e-05	0.263	CACTGTGATTTGGCA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	91	105	-	11.2121	3.43e-05	0.263	CACTGTGATTTGGCA
PLAG1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	1	14	+	7.66327	3.44e-05	0.0679	CGGGCCCTCAGGTG
EGR3	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	17	31	+	8.5	3.44e-05	0.0347	TCCCGCCCCCTCTAG
Rarb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	15	30	+	-1.24138	3.44e-05	0.851	CTGGGTCATGTGGTCA
Rarb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	15	30	+	-1.24138	3.44e-05	0.851	CTGGGTCATGTGGTCA
Rarb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	42	57	-	-1.24138	3.44e-05	0.851	CTGGGTCATGTGGTCA
Rarb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	42	57	-	-1.24138	3.44e-05	0.851	CTGGGTCATGTGGTCA
ZIC3	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	8	22	-	9.84286	3.44e-05	0.101	GCCCCCCCGGGGCAA
TFAP2A	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	41	51	+	12.5091	3.44e-05	0.0506	CCCCTCCGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	51	-	12.5091	3.44e-05	0.0506	CCCCTCCGGCG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	64	74	+	12.5091	3.44e-05	0.0506	CCCCTCCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	74	-	12.5091	3.44e-05	0.0506	CCCCTCCGGCG
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	12.2069	3.44e-05	1	ACCATATGTA
TP73	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	23	40	-	10.2885	3.44e-05	0.649	TGCATGAATGTACACGCA
TEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	+	11.9091	3.44e-05	1	TGTTACGTCACA
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	26	38	-	4.77551	3.44e-05	0.233	TGGGGAAGTCCCC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	46	58	-	4.77551	3.44e-05	0.233	TGGGGAAGTCCCC
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	57	69	+	4.77551	3.44e-05	0.233	TGGGGAAGTCCCC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	77	89	+	4.77551	3.44e-05	0.233	TGGGGAAGTCCCC
EGR1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	53	66	-	11.6538	3.44e-05	0.0167	TCTCCTCCCACTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	8	18	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	8	18	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	12	22	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	12	22	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	16	26	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	18	28	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	18	28	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	18	28	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	20	30	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	12	22	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	12	22	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	24	34	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	24	34	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	28	38	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	28	38	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	33	43	+	12.3077	3.44e-05	0.0109	TGCCCACCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	40	50	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	34	44	-	12.3077	3.44e-05	0.0109	TGCCCACCCCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	34	44	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	44	54	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	50	60	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	55	65	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	66	76	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	71	81	+	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	81	91	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	81	91	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	87	97	-	12.3077	3.44e-05	0.0109	CTCCCTCCCTC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	56	+	12	3.44e-05	0.16	GGCACCTGCC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	55	64	+	12	3.44e-05	0.16	GCCACGCGCC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	2	15	-	11.4655	3.44e-05	0.192	CCTCCCTTGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	2	15	-	11.4655	3.44e-05	0.192	CCTCCCTTGGCGAC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	26	44	-	10.2295	3.44e-05	0.104	ATGCCACCTGAGGGTGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	26	44	-	10.2295	3.44e-05	0.104	ATGCCACCTGAGGGTGGGG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	1	9	+	12.5962	3.44e-05	0.442	AAACCGCAC
GSC	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	32	41	-	11.9811	3.44e-05	1	CATAATCCCC
NR2F1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	56	68	+	12.5102	3.44e-05	0.367	GGGAGGTCACGTG
NR2F1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	47	59	-	12.5102	3.44e-05	0.367	GGGAGGTCACGTG
NR2F1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	47	59	-	12.5102	3.44e-05	0.367	GGGAGGTCACGTG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	48	58	+	12.3818	3.44e-05	0.0522	CTGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	48	58	+	12.3818	3.44e-05	0.0522	CTGCTTCCGCC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	64	74	+	12.3818	3.44e-05	0.0522	CTGCTTCCGCC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	101	114	-	11.9577	3.44e-05	0.214	CTAAAAGGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	101	114	-	11.9577	3.44e-05	0.214	CTAAAAGGGAAGAA
Myog	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	24	34	-	13.0204	3.44e-05	0.131	CGCAGCTGCGA
Myog	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	66	76	+	13.0204	3.44e-05	0.131	GGCAGCTGAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	16	33	+	-10.8421	3.44e-05	0.0354	GGCGGAGGGAAAGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	65	82	-	-10.8421	3.44e-05	0.0354	GGCGGAGGGAAAGGAAGG
E2F4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	10	20	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	15	25	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	6	16	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	20	30	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	20	30	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	20	30	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	20	30	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	33	43	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	33	43	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	33	43	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	33	43	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	39	49	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	41	51	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	64	74	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	76	86	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	66	76	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	85	95	+	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
E2F4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	95	105	-	12.4483	3.44e-05	0.0451	GGGCGGGGAGC
ZNF143	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	64	79	-	4.18966	3.44e-05	0.299	GTCCCAGGAGGCCCCG
Tcf7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	40	51	-	10.871	3.45e-05	1	TGAGAGCAAAGG
Tcf7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	40	51	-	10.871	3.45e-05	1	TGAGAGCAAAGG
Tcf7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	84	95	-	10.871	3.45e-05	1	TGAGAGCAAAGG
Tcf7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	84	95	-	10.871	3.45e-05	1	TGAGAGCAAAGG
NKX2-3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	81	90	+	12.3846	3.45e-05	1	ACCACTTCAG
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	81	90	+	12.3846	3.45e-05	1	ACCACTTCAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	21	41	-	10.9388	3.45e-05	0.0134	GGGGGGGGGGGGGTGGGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	82	102	-	10.9388	3.45e-05	0.0134	GGAGCCGGCCGGCGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	82	102	-	10.9388	3.45e-05	0.0134	GGAGCCGGCCGGCGGGAGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	93	113	-	10.9388	3.45e-05	0.0134	GGTGGGGAGGGGGGAGGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	2	22	+	10.9388	3.45e-05	0.0134	GGTGGGGAGGGGGGAGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	58	78	+	10.9388	3.45e-05	0.0134	GGGGCCGGAGCTGCGGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	58	78	+	10.9388	3.45e-05	0.0134	GGGGCCGGAGCTGCGGGGAGG
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	50	-	12.1915	3.45e-05	0.311	CAGTGTGACGTCATG
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	55	-	12.1915	3.45e-05	0.311	CAGTGTGACGTCATG
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	60	74	+	12.1915	3.45e-05	0.311	CAGTGTGACGTCATG
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	65	79	+	12.1915	3.45e-05	0.311	CAGTGTGACGTCATG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	27	46	+	5.88073	3.45e-05	0.0514	CACCCCCCCCCCCCCCCGCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	2	12	-	11.7759	3.45e-05	0.0145	ACCACGCCCGC
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	39	+	12.5843	3.45e-05	0.871	GTGACGTGAT
SP8	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	90	101	-	11.9737	3.45e-05	0.0252	GCCCTGCCCCCT
HOXA2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.7736	3.45e-05	1	GCCAATTAGC
HOXA2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	10.7736	3.45e-05	1	GCCAATTACC
HOXA2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	10.7736	3.45e-05	1	GCCAATTACC
NR3C1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	+	7.53061	3.45e-05	0.991	AGGAACTTCCTGTCCCG
NR3C1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	-	7.53061	3.45e-05	0.991	AGGAACTTCCTGTCCCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	+	11.6207	3.45e-05	0.0554	GCCCTCTGGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	+	11.6207	3.45e-05	0.0554	GCCCTCTGGGGCA
TCF3	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	9	18	-	13	3.45e-05	0.404	CACACCTGGA
TCF3	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	80	89	+	13	3.45e-05	0.404	CACACCTGGA
TCF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	97	106	+	13	3.45e-05	0.404	CACACCTGGA
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	97	106	+	13	3.45e-05	0.404	CACACCTGGA
TCF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	97	106	+	13	3.45e-05	0.404	CACACCTGGA
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	97	106	+	13	3.45e-05	0.404	CACACCTGGA
PLAG1	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	53	66	+	7.65306	3.45e-05	0.0679	GGGGCGCGGAGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	49	62	-	7.65306	3.45e-05	0.0679	GGGGCGCGGAGGGG
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	72	83	+	12.2826	3.45e-05	1	GATTATTTGTGT
Foxd3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	72	83	+	12.2826	3.45e-05	1	GATTATTTGTGT
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	38	51	-	8.34043	3.45e-05	0.0959	GGAACCCTGTGGTG
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	70	84	-	12.3966	3.45e-05	0.594	GTTTTCTGCAGAATC
Stat6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	70	84	-	12.3966	3.45e-05	0.594	GTTTTCTGCAGAATC
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	70	84	-	12.3966	3.45e-05	0.594	GTTTTCTGCAGAATC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	70	84	-	12.3966	3.45e-05	0.594	GTTTTCTGCAGAATC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	49	62	-	12.2121	3.45e-05	0.0457	CGCCGTCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	49	62	-	12.2121	3.45e-05	0.0457	CGCCGTCCGGCCTC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	63	76	+	11.2692	3.45e-05	0.459	GCGGAGACGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	63	76	+	11.2692	3.45e-05	0.459	GCGGAGACGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	63	76	+	11.2692	3.45e-05	0.459	GCGGAGACGTCAGC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	63	76	+	11.2692	3.45e-05	0.459	GCGGAGACGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	75	88	+	11.2692	3.45e-05	0.459	CGGGCCTCGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	75	88	+	11.2692	3.45e-05	0.459	CGGGCCTCGTCAGC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	75	88	+	11.2692	3.45e-05	0.459	CGGGCCTCGTCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	75	88	+	11.2692	3.45e-05	0.459	CGGGCCTCGTCAGC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	75	88	+	11.2692	3.45e-05	0.459	CGGGCCTCGTCAGC
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	58	68	+	11.9091	3.45e-05	0.273	GTTACAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	58	68	+	11.9091	3.45e-05	0.273	GTTACAGGAAG
SP2	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	18	+	11.7931	3.45e-05	0.00958	CCCCCACCCACTACG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	97	111	-	11.7931	3.45e-05	0.00958	CCCCCACCCACTACG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	97	111	-	11.7931	3.45e-05	0.00958	CCCCCACCCACTACG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	20	+	11.7541	3.45e-05	0.0641	GGCCCGAGGGGCG
ATF7	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	28	41	+	9.3	3.45e-05	0.149	AGGTTACGTCAGCG
ATF7	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	23	36	-	9.3	3.45e-05	0.149	ACCTGACGTCACTT
ATF7	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	45	58	+	9.3	3.45e-05	0.149	ACCTGACGTCACTT
ATF7	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	33	46	-	9.3	3.45e-05	0.149	AGGTTACGTCAGCG
ATF7	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	69	82	+	9.3	3.45e-05	0.149	AGGTTACGTCAGCG
ATF7	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	57	70	-	9.3	3.45e-05	0.149	ACCTGACGTCACTT
ATF7	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	79	92	+	9.3	3.45e-05	0.149	ACCTGACGTCACTT
ATF7	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	74	87	-	9.3	3.45e-05	0.149	AGGTTACGTCAGCG
REL	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	26	35	+	12.101	3.45e-05	0.271	GGGGACTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	46	55	+	12.101	3.45e-05	0.271	GGGGACTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	101	110	+	12.101	3.45e-05	0.271	GGGGACTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	5	14	-	12.101	3.45e-05	0.271	GGGGACTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	33	42	-	12.101	3.45e-05	0.271	GGGGACTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	60	69	-	12.101	3.45e-05	0.271	GGGGACTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	62	71	-	12.101	3.45e-05	0.271	GGGGACTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	80	89	-	12.101	3.45e-05	0.271	GGGGACTTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	28	38	-	12.2787	3.45e-05	0.0489	CCGGAAATGAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	28	38	-	12.2787	3.45e-05	0.0489	CCGGAAATGAT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	29	39	-	12.2787	3.45e-05	0.0489	CCGGAAATGAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	56	66	+	12.2787	3.45e-05	0.0489	GCGGAAGTCCA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	56	66	+	12.2787	3.45e-05	0.0489	GCGGAAGTCCA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	22	34	-	4.7551	3.45e-05	0.233	GGGGGATCCCCTC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	54	68	+	10.8857	3.45e-05	0.108	AGGGGGGAGGGGGTG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	54	68	+	10.8857	3.45e-05	0.108	AGGGGGGAGGGGGTG
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	14	25	+	11.9677	3.45e-05	1	TTATGCAAAGGA
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	48	59	+	11.6897	3.45e-05	0.33	TCGCCCACGCAG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	48	59	+	11.6897	3.45e-05	0.33	TCGCCCACGCAG
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	100	114	+	12.2394	3.46e-05	0.341	AGAATAAAAACAGAA
EGR3	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	5	19	-	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	38	52	+	8.48276	3.46e-05	0.0347	GCCCGCCCCGGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	96	110	+	8.48276	3.46e-05	0.0347	TCGCGCCCACGCTGG
YY2	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	22	32	+	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	29	39	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	29	39	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	76	86	+	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	91	101	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	91	101	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	91	101	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	91	101	-	12.4091	3.46e-05	0.269	CGCCGCCATGA
KLF14	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	51	64	+	10.5	3.46e-05	0.0275	CCCCCCGCCCCTTT
KLF14	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	51	64	-	10.5	3.46e-05	0.0275	CCCCCCGCCCCTTT
Tcf12	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	5	15	-	13	3.46e-05	0.156	CGCAGCTGCCG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	34	44	+	13	3.46e-05	0.156	GGCAGCTGGGT
Tcf12	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	69	+	13	3.46e-05	0.156	GGCAGCTGTTG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	65	75	-	13	3.46e-05	0.156	GGCAGCTGTTG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	79	89	-	13	3.46e-05	0.156	CGCAGCTGCCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	87	97	-	13	3.46e-05	0.156	CGCAGCTGCCG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	110	+	13	3.46e-05	0.156	CGCAGCTGCCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	110	+	13	3.46e-05	0.156	CGCAGCTGCCG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	80	94	+	9.82857	3.46e-05	0.101	AGACCCCTGCGGCGG
HES5	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	-	5.46552	3.46e-05	0.296	TGGCATGTGTCC
HES5	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	+	5.46552	3.46e-05	0.296	TGGCATGTGTCC
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	48	57	+	12.1944	3.46e-05	1	CCAATAAATA
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	84	98	-	7.65169	3.46e-05	0.215	GGAACCTTGGCTGGA
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	84	98	-	7.65169	3.46e-05	0.215	GGAACCTTGGCTGGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	13	27	-	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	13	27	-	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	13	27	-	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	13	27	-	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	18	32	-	10.082	3.46e-05	0.0493	CACCCCGCCCTCCCA
Klf12	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	35	49	+	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	22	36	-	10.082	3.46e-05	0.0493	CACCCCGCCCTCACC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	66	80	-	10.082	3.46e-05	0.0493	GGCCACTCCCAGGGT
Klf12	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	66	80	-	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	66	80	-	10.082	3.46e-05	0.0493	GGCCACTCCCAGGGT
Klf12	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	83	97	+	10.082	3.46e-05	0.0493	CACCCCGCCCTCCCA
Klf12	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	88	102	+	10.082	3.46e-05	0.0493	GACTACGCCCCCACA
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	24	-	12.0909	3.46e-05	0.128	TCCCGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	24	-	12.0909	3.46e-05	0.128	TCCCGGAAGCT
ELF5	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	31	-	12.0909	3.46e-05	0.128	AACCGGAAGAG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	38	-	12.0909	3.46e-05	0.128	AACCGGAAGAG
ELF5	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	91	101	+	12.0909	3.46e-05	0.128	TCCCGGAAGCT
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	-	12.3269	3.46e-05	0.0703	AGCCCGCGGCT
RREB1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	20	39	-	5.87156	3.46e-05	0.0514	CCCCACCCCTCCGCCTCCAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	27	46	-	5.87156	3.46e-05	0.0514	CCACCCACCGCCTCCCTCCG
RREB1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	76	95	+	5.87156	3.46e-05	0.0514	CCCCACCCCTCCGCCTCCAC
USF2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	17	+	12.5918	3.46e-05	0.105	AGCACGTGGCC
E2F7	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	41	54	+	-1.45902	3.46e-05	1	TTTCCCCGCCACCA
E2F7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	61	74	-	-1.45902	3.46e-05	1	TTTCCCCGCCACCA
E2F7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	61	74	-	-1.45902	3.46e-05	1	TTTCCCCGCCACCA
E2F7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	61	74	-	-1.45902	3.46e-05	1	TTTCCCCGCCACCA
E2F7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	61	74	-	-1.45902	3.46e-05	1	TTTCCCCGCCACCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	43	53	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	43	53	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	43	53	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	43	53	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	95	105	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	95	105	-	12.4909	3.46e-05	0.0506	AGCCCCAGGGA
MSC	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	-	11.6951	3.46e-05	0.569	AACAGCTGCG
MSC	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	+	11.6951	3.46e-05	0.569	AACAGCTGCG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	70	87	-	-10.8553	3.46e-05	0.0355	GGGAAGAGGGCAGCGTGG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	3	18	-	4.17241	3.46e-05	0.299	CTCCCAGAATTCCCCC
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	3	18	-	4.17241	3.46e-05	0.299	CTCCCAGAATTCCCCC
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	23	38	+	4.17241	3.46e-05	0.299	TGCCCACAAGGCAGCG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	23	38	+	4.17241	3.46e-05	0.299	TGCCCACAAGGCAGCG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	23	38	+	4.17241	3.46e-05	0.299	TGCCCACAAGGCAGCG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	23	38	+	4.17241	3.46e-05	0.299	TGCCCACAAGGCAGCG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	23	38	-	4.17241	3.46e-05	0.299	CTCCCAGAATTCCCCC
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	23	38	-	4.17241	3.46e-05	0.299	CTCCCAGAATTCCCCC
ZNF143	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	77	92	+	4.17241	3.46e-05	0.299	CTCCCAGAATTCCCCC
RARA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	13	30	-	-6.15152	3.46e-05	1	AAGGCCGAAAGTTTACAT
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	43	52	-	12.2	3.46e-05	1	AAGGTGTCAA
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	43	52	-	12.2	3.46e-05	1	AAGGTGTCAA
YY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	89	100	-	12.0577	3.46e-05	0.193	CAGGATGGTGGC
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	89	100	-	12.0577	3.46e-05	0.193	CAGGATGGTGGC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	27	36	+	11.1273	3.46e-05	0.226	AACACCTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	79	88	-	11.1273	3.46e-05	0.226	AACACCTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	79	88	-	11.1273	3.46e-05	0.226	AACACCTGAC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	-	12.2364	3.46e-05	0.0548	CCCCTGCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	-	12.2364	3.46e-05	0.0548	CCCCTGCGGGCG
E2F6	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	40	50	+	12.6552	3.46e-05	0.0509	GCGAGGGAGGC
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
ETV3	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.1831	3.46e-05	0.104	GCCGGAAGCG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	12	28	+	11.1939	3.46e-05	0.338	AGTTCACGTAACATTCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	12	28	+	11.1939	3.46e-05	0.338	AGTTCACGTAACATTCA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	80	96	+	11.1939	3.46e-05	0.338	AGTTCACGTAACATTCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	97	113	+	11.1939	3.46e-05	0.338	GGTTCGTCAGCAGGGGA
FEV	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	12.3269	3.46e-05	0.107	CCCGGAAGTA
FEV	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	12.3269	3.46e-05	0.107	CCCGGAAGTA
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	77	91	-	11.197	3.47e-05	0.263	CATTGTGACTCTGCC
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	55	70	+	5.52727	3.47e-05	0.338	GAGGTCGGAGTGCGCG
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	12.1379	3.47e-05	1	GACATATGCT
IRF7	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	60	73	+	10.3387	3.47e-05	0.664	ACGGAAATGAAAGT
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	22	32	+	11.6182	3.47e-05	0.0146	GAGCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	22	32	+	11.6182	3.47e-05	0.0146	GAGCACGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	63	73	+	11.6182	3.47e-05	0.0146	GCGTCGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	42	52	-	11.6182	3.47e-05	0.0146	GCGTCGGCGCA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	66	80	+	11.6515	3.47e-05	0.0907	GCCTCGCGGGGCTCA
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	66	80	+	11.6515	3.47e-05	0.0907	GCCTCGCGGGGCTCA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	66	80	+	11.6515	3.47e-05	0.0907	GCCTCGCGGGGCTCA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	66	80	+	11.6515	3.47e-05	0.0907	GCCTCGCGGGGCTCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	66	80	+	11.6515	3.47e-05	0.0907	GCCTCGCGGGGCTCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	95	+	12.3455	3.47e-05	0.0678	CGCCCCAGGGA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	20	30	-	12.3455	3.47e-05	0.0678	CGCCCCAGGGA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	70	88	-	10.2131	3.47e-05	0.104	GGGCCTCTCGGGGTCGGCC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	70	88	-	10.2131	3.47e-05	0.104	GGGCCTCTCGGGGTCGGCC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	12.8654	3.47e-05	0.293	AGCACGTGCG
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	12.8654	3.47e-05	0.293	AGCACGTGCG
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	12.8654	3.47e-05	0.293	AGCACGTGCG
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	12.8654	3.47e-05	0.293	AGCACGTGCG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	15	24	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	15	24	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	21	30	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	26	35	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	26	35	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	40	49	+	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.3462	3.47e-05	0.0885	TCCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.3462	3.47e-05	0.0885	TCCGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.3462	3.47e-05	0.0885	TCCGGAAGTA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.3462	3.47e-05	0.0885	TCCGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	82	91	-	12.3462	3.47e-05	0.0885	AGGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	82	91	-	12.3462	3.47e-05	0.0885	AGGGGAAGTG
INSM1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	46	57	-	11.7143	3.47e-05	0.153	TTTATGGGGCCG
INSM1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	58	69	+	11.7143	3.47e-05	0.153	TTTATGGGGCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	69	79	-	12.0488	3.47e-05	0.0169	ACCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	69	79	-	12.0488	3.47e-05	0.0169	ACCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	91	101	-	12.0488	3.47e-05	0.0169	CCCACTCCCAA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	91	101	-	12.0488	3.47e-05	0.0169	CCCACTCCCAA
SP4	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	18	34	+	6.2	3.47e-05	0.0216	TCTGCCCCGCCCTTGTC
SP4	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	65	81	+	6.2	3.47e-05	0.0216	CCGGCCCCGGCCCCCAG
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	68	84	+	6.2	3.47e-05	0.0216	TTGCCCCCGCCCAACCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	30	46	-	6.2	3.47e-05	0.0216	TTGCCCCCGCCCAACCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	34	50	-	6.2	3.47e-05	0.0216	TAGGCCGCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	34	50	-	6.2	3.47e-05	0.0216	TAGGCCGCGCCCCGCCC
SP4	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	34	50	-	6.2	3.47e-05	0.0216	CCGGCCCCGGCCCCCAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	34	50	-	6.2	3.47e-05	0.0216	TAGGCCGCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	34	50	-	6.2	3.47e-05	0.0216	TAGGCCGCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	96	112	-	6.2	3.47e-05	0.0216	TCTGCCCCGCCCTTGTC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	96	112	-	6.2	3.47e-05	0.0216	TCTGCCCCGCCCTTGTC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	+	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	+	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	-	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	40	51	-	12.1429	3.47e-05	0.0857	AGCCCCCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	-	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	-	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	-	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	-	12.1429	3.47e-05	0.0857	ACCCCGGGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	-	12.1429	3.47e-05	0.0857	AGCCCGGCGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	-	12.1429	3.47e-05	0.0857	AGCCCGGCGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	-	12.1429	3.47e-05	0.0857	AGCCCGGCGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	-	12.1429	3.47e-05	0.0857	AGCCCGGCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	-	12.2182	3.47e-05	0.0893	GGCCTGGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	-	12.2182	3.47e-05	0.0893	GGCCTGGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	-	12.2182	3.47e-05	0.0893	GGCCTGGGGGCA
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	8	21	-	9.90164	3.47e-05	0.177	CGCCCCCCGCTCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	11	24	-	9.90164	3.47e-05	0.177	GCCCCCCTGGAGAG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	11	24	-	9.90164	3.47e-05	0.177	GCCCCCCTGGAGAG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	36	49	+	9.90164	3.47e-05	0.177	CGCCCCCCGCTCCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	93	106	+	9.90164	3.47e-05	0.177	GCCCCCCTGGAGAG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	93	106	+	9.90164	3.47e-05	0.177	GCCCCCCTGGAGAG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	58	70	-	4.73469	3.47e-05	0.233	CGGGGACTTCCCC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	78	90	-	4.73469	3.47e-05	0.233	CGGGGACTTCCCC
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	25	37	+	4.73469	3.47e-05	0.233	CGGGGACTTCCCC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	45	57	+	4.73469	3.47e-05	0.233	CGGGGACTTCCCC
ZIC4	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	7	21	+	11.6	3.47e-05	0.106	GGCCGCCCGGCGTGG
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	84	94	+	12.1667	3.47e-05	0.0456	CTCCACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	35	45	-	12.1667	3.47e-05	0.0456	CTCCACACCCA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	12.2931	3.47e-05	0.0977	GCCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	12.2931	3.47e-05	0.0977	GCCGGAAGCT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	104	113	+	13.0408	3.47e-05	0.422	AACACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	104	113	+	13.0408	3.47e-05	0.422	AACACCTGCG
HINFP	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	4	15	-	11.9697	3.47e-05	0.109	GTGCGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	70	81	-	11.9697	3.47e-05	0.109	GTGCGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	89	100	-	11.9697	3.47e-05	0.109	CCGCCTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	89	100	-	11.9697	3.47e-05	0.109	CCGCCTCCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	89	100	-	11.9697	3.47e-05	0.109	CCGCCTCCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	89	100	-	11.9697	3.47e-05	0.109	CCGCCTCCGCGT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	50	63	+	8.31915	3.47e-05	0.0959	TACGACCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	50	63	+	8.31915	3.47e-05	0.0959	TACGACCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	50	63	+	8.31915	3.47e-05	0.0959	TACGACCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	50	63	+	8.31915	3.47e-05	0.0959	TACGACCCGCCGCG
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	16	26	-	12.4808	3.48e-05	0.273	AAAATGACTAA
BATF::JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	16	26	-	12.4808	3.48e-05	0.273	AAAATGACTAA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	78	88	-	12.4808	3.48e-05	0.273	AAAATGACTAA
EGR1	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	20	33	+	11.6346	3.48e-05	0.0167	GCGTCGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	26	39	-	11.6346	3.48e-05	0.0167	CGGCCTCCGCCGCG
EGR1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	76	89	+	11.6346	3.48e-05	0.0167	CGGCCTCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	67	80	-	11.6346	3.48e-05	0.0167	TGTCCTCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	67	80	-	11.6346	3.48e-05	0.0167	TGTCCTCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	67	80	-	11.6346	3.48e-05	0.0167	TGTCCTCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	67	80	-	11.6346	3.48e-05	0.0167	TGTCCTCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	67	80	-	11.6346	3.48e-05	0.0167	TGTCCTCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	82	95	-	11.6346	3.48e-05	0.0167	GCGTCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	89	102	-	11.6346	3.48e-05	0.0167	CGCTCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	89	102	-	11.6346	3.48e-05	0.0167	CGCTCGCCGCCGCC
Stat4	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	75	88	+	12.5	3.48e-05	0.227	TTTCTGAGAAGCAC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	+	12.3273	3.48e-05	0.0678	CGCCTGCGGCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	10	24	-	8.46552	3.48e-05	0.0347	TACCCCCCACCCATC
SP8	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	26	+	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	6	17	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	52	63	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	52	63	-	11.9605	3.48e-05	0.0252	GCTCCGCCCCCA
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	51	65	-	11.6545	3.48e-05	0.308	AGAAAGAGAAACGGC
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	51	65	-	11.6545	3.48e-05	0.308	AGAAAGAGAAACGGC
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	51	65	-	11.6545	3.48e-05	0.308	AGAAAGAGAAACGGC
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	51	65	-	11.6545	3.48e-05	0.308	AGAAAGAGAAACGGC
ELF3	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	8	20	-	10.0862	3.48e-05	0.134	CTACCGGAAGTAC
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	27	39	+	10.0862	3.48e-05	0.134	AACCAGGAAGCTG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	27	39	+	10.0862	3.48e-05	0.134	AACCAGGAAGCTG
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	17	29	-	10.0862	3.48e-05	0.134	ACGGCGGAAGTAA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	17	29	-	10.0862	3.48e-05	0.134	ACGGCGGAAGTAA
ELF3	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	38	50	+	10.0862	3.48e-05	0.134	CCGCCGGAAGTGG
ELF3	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	72	84	+	10.0862	3.48e-05	0.134	CTACCGGAAGTAC
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	65	77	-	10.0862	3.48e-05	0.134	CCGCCGGAAGTGG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	65	77	-	10.0862	3.48e-05	0.134	CCGCCGGAAGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	65	77	-	10.0862	3.48e-05	0.134	CCGCCGGAAGTGG
ELF3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	86	98	+	10.0862	3.48e-05	0.134	ACGGCGGAAGTAA
Mafb	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	35	46	-	12.2135	3.48e-05	0.778	AAAGCGCTGAGG
Mafb	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	64	75	-	12.2135	3.48e-05	0.778	AAAGCGCTGAGG
Mafb	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	68	79	-	12.2135	3.48e-05	0.778	AAAGCGCTGAGG
Mafb	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	36	47	+	12.2135	3.48e-05	0.778	AAAGCGCTGAGG
Mafb	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	40	51	+	12.2135	3.48e-05	0.778	AAAGCGCTGAGG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	11	30	+	5.85321	3.48e-05	0.0514	CCCGCCCCCGCCACCCCAGC
Esrrg	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	2	11	-	12.2245	3.48e-05	0.8	ACAAGGTCAG
Esrrg	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	105	114	+	12.2245	3.48e-05	0.8	ACAAGGTCAG
Esrrg	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	105	114	+	12.2245	3.48e-05	0.8	ACAAGGTCAG
Esrrg	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	105	114	+	12.2245	3.48e-05	0.8	ACAAGGTCAG
Esrrg	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	105	114	+	12.2245	3.48e-05	0.8	ACAAGGTCAG
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	89	98	+	13.0328	3.48e-05	0.389	GACACCTGTG
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	89	98	+	13.0328	3.48e-05	0.389	GACACCTGTG
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	8	17	-	12.7121	3.48e-05	0.247	TCCACGTGCA
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	8	17	-	12.7121	3.48e-05	0.247	TCCACGTGCA
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	90	99	-	12.7121	3.48e-05	0.247	TCCACGTGCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	33	48	-	11.4727	3.48e-05	0.0374	CCCTGCCCCCCCACCC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	42	57	-	11.4727	3.48e-05	0.0374	ACCCGCCCGCGCTGTG
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	58	73	+	11.4727	3.48e-05	0.0374	ACCCGCCCGCGCTGTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	92	107	-	11.4727	3.48e-05	0.0374	CCACGCCCCGGCGCTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	92	107	-	11.4727	3.48e-05	0.0374	CCACGCCCCGGCGCTG
Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	27	40	-	5.21951	3.48e-05	0.406	GCGGTCAAAGCTTA
Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	27	40	-	5.21951	3.48e-05	0.406	GCGGTCAAAGCTTA
NR2C2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	20	34	+	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	29	43	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	29	43	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	29	43	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	29	43	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	29	43	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	47	61	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	61	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	61	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	47	61	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	78	92	+	10.8714	3.48e-05	0.108	CCAGTGCAAAGTGCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	78	92	+	10.8714	3.48e-05	0.108	CCAGTGCAAAGTGCA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	75	89	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	81	95	-	10.8714	3.48e-05	0.108	GGGGGGCGGGGGGGG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	83	97	-	10.8714	3.48e-05	0.108	CGGCGTTAGAGGTGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	96	110	-	10.8714	3.48e-05	0.108	TGGGGGCGGGGGGTA
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	91	100	-	12.9016	3.48e-05	0.89	CAAACTGACA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	91	100	-	12.9016	3.48e-05	0.89	CAAACTGACA
GATA1::TAL1	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	64	81	+	12.1273	3.48e-05	0.915	ACTATCTGGGAAACGCAT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	1	11	-	12.2885	3.48e-05	0.011	TGTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	1	11	-	12.2885	3.48e-05	0.011	TGTCCGCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	12	22	+	12.2885	3.48e-05	0.011	TGTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	32	42	+	12.2885	3.48e-05	0.011	GGCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	38	48	+	12.2885	3.48e-05	0.011	GGCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	38	48	+	12.2885	3.48e-05	0.011	GGCCCTCCCTC
SPIC	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	52	65	+	11.9437	3.48e-05	0.214	AGAAAGGGGAAGGG
Foxd3	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	53	64	+	12.2717	3.48e-05	1	TATTATTTATTT
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	4	20	+	11.1837	3.48e-05	0.338	GGGGCAGGATGGGGGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	4	20	+	11.1837	3.48e-05	0.338	GGGGCAGGATGGGGGCA
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	+	11.7377	3.48e-05	0.0641	AGCCCCCGCGGCC
TCF7L2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	47	60	-	12.2909	3.48e-05	1	GAAGTTAAAAGGGA
TCF7L2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	47	60	-	12.2909	3.48e-05	1	GAAGTTAAAAGGGA
TFEC	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	12.3171	3.48e-05	0.14	GCCACGTGAG
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	12.3171	3.48e-05	0.14	GCCACGTGAG
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	12.3171	3.48e-05	0.14	GCCACGTGAG
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	50	64	-	11.8288	3.48e-05	0.161	CAGGGCCAAAGTTTA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	79	93	-	11.8288	3.48e-05	0.161	CAGGGCCAAAGTTTA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	35	+	11.7759	3.48e-05	0.0096	CCCCCTCCCCGCTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	35	+	11.7759	3.48e-05	0.0096	CCCCCTCCCCGCTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	35	+	11.7759	3.48e-05	0.0096	CCCCCTCCCCGCTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	35	+	11.7759	3.48e-05	0.0096	CCCCCTCCCCGCTCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	39	53	+	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	39	53	+	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	39	53	+	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	39	53	+	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	49	63	+	11.7759	3.48e-05	0.0096	TTTCCTCCCCCGCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	68	+	11.7759	3.48e-05	0.0096	TCCCCTCCCCCAGGA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	68	+	11.7759	3.48e-05	0.0096	TCCCCTCCCCCAGGA
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	68	+	11.7759	3.48e-05	0.0096	TCCCCTCCCCCAGGA
SP2	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	69	83	+	11.7759	3.48e-05	0.0096	ACCCCACCCCCAGAC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	26	40	-	11.7759	3.48e-05	0.0096	CACCCGCCCCGCCGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	30	44	-	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	30	44	-	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	30	44	-	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	30	44	-	11.7759	3.48e-05	0.0096	TGCCCTCCCCCATGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	36	50	-	11.7759	3.48e-05	0.0096	ACTCCGCCTCCCGGA
SP2	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	47	61	-	11.7759	3.48e-05	0.0096	TCCCCTCCCCCAGGA
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	52	66	-	11.7759	3.48e-05	0.0096	TTTCCTCCCCCGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	52	66	-	11.7759	3.48e-05	0.0096	TTTCCTCCCCCGCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	52	66	-	11.7759	3.48e-05	0.0096	TTTCCTCCCCCGCCT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	83	93	-	12.6531	3.48e-05	0.18	TTATGAGTCAT
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	47	67	-	10.9184	3.48e-05	0.0135	GGAGAAAGAGGGAGGGAGACC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	39	59	+	10.9184	3.48e-05	0.0135	TGGAGAGTGAGGAGGAGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	48	68	+	10.9184	3.48e-05	0.0135	GGAGAAAGAGGGAGGGAGACC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	53	73	+	10.9184	3.48e-05	0.0135	AAAGGAGGCCGGAGCTGTGGG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	21	31	+	11.9344	3.48e-05	0.136	GACCGGAAGGA
SP3	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	73	83	+	12.0407	3.48e-05	0.0169	CCCACGCCTCA
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	32	42	-	12.0407	3.48e-05	0.0169	CCCACGCCTCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	32	42	-	12.0407	3.48e-05	0.0169	CCCACGCCTCA
NFYA	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	1	18	+	10.7439	3.48e-05	0.124	ACCAAGTTCATTGGTCAG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	5	22	-	10.7439	3.48e-05	0.124	CATATTCTGATTGGATGA
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	5	22	-	10.7439	3.48e-05	0.124	CATATTCTGATTGGATGA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	5	22	-	10.7439	3.48e-05	0.124	CATATTCTGATTGGATGA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	5	22	-	10.7439	3.48e-05	0.124	CATATTCTGATTGGATGA
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	93	110	+	10.7439	3.48e-05	0.124	CATATTCTGATTGGATGA
Arntl	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	5	14	-	12.377	3.48e-05	0.2	TATCACGTGG
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	12.7377	3.49e-05	0.333	AGCACGTGGA
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	12.7377	3.49e-05	0.333	AGCACGTGGA
Npas2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	12.7377	3.49e-05	0.333	ACCACGTGCC
Klf4	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	29	38	+	12.1429	3.49e-05	0.0164	AGGGTGTGGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	30	39	+	12.1429	3.49e-05	0.0164	TGGGCGTAGC
Klf4	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	77	86	-	12.1429	3.49e-05	0.0164	AGGGTGTGGA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	12	23	+	11.7041	3.49e-05	0.153	GTTCAGGGGTTG
INSM1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	31	42	+	11.7041	3.49e-05	0.153	AGTCTGGGGCCG
INSM1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	73	84	-	11.7041	3.49e-05	0.153	AGTCTGGGGCCG
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	3	12	+	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	3	12	+	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	41	50	-	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	61	70	+	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	61	70	+	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	65	74	+	12.6897	3.49e-05	0.659	TCTTTGTTTT
Sox3	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	103	112	-	12.6897	3.49e-05	0.659	TCTTTGTTTT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	59	68	+	11.7982	3.49e-05	0.0491	CCCCCCCCTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	4	14	-	12.2069	3.49e-05	0.223	TTCTGTGGCCT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	4	14	-	12.2069	3.49e-05	0.223	TTCTGTGGCCT
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	41	50	+	12.5152	3.49e-05	0.585	CACACGTGTA
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	41	50	+	12.5152	3.49e-05	0.585	CACACGTGTA
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	41	50	+	12.5152	3.49e-05	0.585	CACACGTGTA
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	55	68	-	6.06061	3.49e-05	0.379	GACCCCCCGCCGTC
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	55	68	-	6.06061	3.49e-05	0.379	GACCCCCCGCCGTC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	54	67	-	11.2	3.49e-05	0.224	GTAACACGTCAGAA
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	54	67	-	11.2	3.49e-05	0.224	GTAACACGTCAGAA
RREB1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	65	+	5.84404	3.49e-05	0.0514	CCCCCTCCCCACCCATCCCG
SP4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	91	107	+	6.18182	3.49e-05	0.0216	TCCACCCCTCCCCCCTC
SP4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	8	24	-	6.18182	3.49e-05	0.0216	TCCACCCCTCCCCCCTC
SP4	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	45	61	-	6.18182	3.49e-05	0.0216	CTTCCCCCGCCCATCCT
SOX8	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	53	68	+	-9.45455	3.49e-05	1	AACAGTCTCCAGGGTG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	47	56	-	12.1897	3.49e-05	0.117	CTCAGCTGCC
NHLH1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	59	68	+	12.1897	3.49e-05	0.117	CTCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	77	86	+	12.1897	3.49e-05	0.117	CTCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	77	86	+	12.1897	3.49e-05	0.117	CTCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	88	97	+	12.1897	3.49e-05	0.117	CTCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	88	97	+	12.1897	3.49e-05	0.117	CTCAGCTGCC
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	25	39	-	11.1818	3.49e-05	0.263	CAACATGACTTATCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	25	39	-	11.1818	3.49e-05	0.263	CAACATGACTTATCA
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	51	60	+	12.4615	3.49e-05	0.439	AAACCGCAGT
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	51	60	+	12.4615	3.49e-05	0.439	AAACCGCAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	51	60	+	12.4615	3.49e-05	0.439	AAACCGCAGT
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	51	60	+	12.4615	3.49e-05	0.439	AAACCGCAGT
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	51	60	+	12.4615	3.49e-05	0.439	AAACCGCAGT
POU3F2	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	46	57	+	11.9516	3.49e-05	1	CTATGCAAATAA
POU3F2	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	58	69	-	11.9516	3.49e-05	1	CTATGCAAATAA
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	59	70	-	11.9516	3.49e-05	1	CTATGCAAATAA
ELK1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	11.8085	3.49e-05	0.0776	GCCGGATGTG
ELK1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	11.8085	3.49e-05	0.0776	GCCGGATGTG
ELK1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	11.8085	3.49e-05	0.0776	GCCGGATGTG
ELK1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	11.8085	3.49e-05	0.0776	GCCGGATGTG
KLF16	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	2	12	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	3	13	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	3	13	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	24	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	25	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	27	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	24	34	+	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	17	27	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	42	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	42	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	42	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	25	35	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	25	35	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	25	35	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	25	35	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	25	35	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	62	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	64	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	64	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	56	66	+	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	46	56	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	47	57	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	68	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	69	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	49	59	-	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	53	63	-	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	71	81	+	11.7586	3.49e-05	0.0145	ACCCCCCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	71	81	+	11.7586	3.49e-05	0.0145	ACCCCCCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	88	98	+	11.7586	3.49e-05	0.0145	CCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	103	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	103	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	103	113	+	11.7586	3.49e-05	0.0145	GTCCCGCCCCT
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	37	46	+	12.8539	3.49e-05	0.904	ATTTAGGTCA
FOS	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	+	12.7234	3.49e-05	0.211	AATGAGTCATA
CTCF	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	6	24	-	10.1967	3.49e-05	0.104	CGGCCGGGATAGGGCGCCG
CTCF	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	91	109	+	10.1967	3.49e-05	0.104	CGGCCGGGATAGGGCGCCG
JDP2(var.2)	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	+	9.06122	3.49e-05	0.128	GGTTACGTCAGC
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	-	9.06122	3.49e-05	0.128	GGTTACGTCAGC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	+	9.06122	3.49e-05	0.128	GGTTACGTCAGC
JDP2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	-	9.06122	3.49e-05	0.128	GGTTACGTCAGC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	72	83	+	10.8727	3.49e-05	0.0999	AATCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	72	83	+	10.8727	3.49e-05	0.0999	AATCAGGAAGTC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	4	18	+	7.62921	3.49e-05	0.215	AGAACCCTAGGGTGT
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	4	18	+	7.62921	3.49e-05	0.215	AGAACCCTAGGGTGT
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	53	67	-	7.62921	3.49e-05	0.215	AGAACCCTAGGGTGT
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	53	67	-	7.62921	3.49e-05	0.215	AGAACCCTAGGGTGT
EGR3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	9	23	-	8.44828	3.49e-05	0.0347	CCCCGCCGCCGCCCG
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	5	16	-	5.54098	3.5e-05	0.598	AGTCAGGTGCCA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	5	16	-	5.54098	3.5e-05	0.598	AGTCAGGTGCCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	5	16	-	5.54098	3.5e-05	0.598	AGTCAGGTGCCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	5	16	-	5.54098	3.5e-05	0.598	AGTCAGGTGCCA
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	50	63	-	9.88525	3.5e-05	0.177	CCCCACCCGCGGCG
SPDEF	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	26	-	11.7273	3.5e-05	0.225	AACCGGAAGCT
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	64	-	11.7273	3.5e-05	0.225	AACCGGAAGCT
ZIC1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	85	98	-	8.29787	3.5e-05	0.0959	GAGCACCCGCAGTG
NFIL3	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	67	77	+	12.4646	3.5e-05	1	TTACGTAAGAG
Ascl2	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	-	12.3429	3.5e-05	0.174	CACAGCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	76	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	76	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	107	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	107	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	107	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	107	-	12.3429	3.5e-05	0.174	TGCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	-	12.3429	3.5e-05	0.174	CACAGCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	-	12.3429	3.5e-05	0.174	CACAGCTGTT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	56	70	+	9.8	3.5e-05	0.101	GCCTCCCTGTGGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	56	70	+	9.8	3.5e-05	0.101	GCCTCCCTGTGGCGG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	100	114	-	9.8	3.5e-05	0.101	GCACACCCGCCGCGG
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	23	36	-	7.52041	3.5e-05	0.365	TGCCCCGTAGCCAA
NFIC::TLX1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	10	23	+	7.52041	3.5e-05	0.365	TGGCTGGGCGACAA
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	79	92	+	7.52041	3.5e-05	0.365	TGCCCCGTAGCCAA
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	10	20	-	12.3061	3.5e-05	0.14	GTCATGTGATT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	10	20	-	12.3061	3.5e-05	0.14	GTCATGTGATT
USF1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	105	+	12.3061	3.5e-05	0.14	GTCATGTGATT
Gabpa	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	45	55	+	12.2623	3.5e-05	0.0489	CCGGAAGAAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	55	65	+	12.2623	3.5e-05	0.0489	CCGGAACCGGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	55	65	+	12.2623	3.5e-05	0.0489	CCGGAACCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	55	65	+	12.2623	3.5e-05	0.0489	CCGGAACCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	55	65	+	12.2623	3.5e-05	0.0489	CCGGAACCGGC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	29	49	+	10.5484	3.5e-05	0.162	TCAGTCTTTCCCTTTCTGTCA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	65	85	-	10.5484	3.5e-05	0.162	TCAGTCTTTCCCTTTCTGTCA
Ar	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	-	8.58621	3.5e-05	0.882	AGGAACATGGTGTTTAT
Ar	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	+	8.58621	3.5e-05	0.882	AGGAACATGGTGTTTAT
Ar	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	+	8.58621	3.5e-05	0.882	AGGAACATGGTGTTTAT
Hmx2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	26	42	+	11.8947	3.5e-05	1	TCAATCAATTATACCAT
Hmx2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	26	42	+	11.8947	3.5e-05	1	TCAATCAATTATACCAT
Hmx2	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	94	110	+	11.8947	3.5e-05	1	TCAATCAATTATACCAT
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	36	-	5.62069	3.5e-05	0.189	TCCCACGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	43	54	+	5.62069	3.5e-05	0.189	TCCCACGTGCCC
KLF14	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	33	46	+	10.4655	3.5e-05	0.0278	TGTGACGCCCACCC
KLF14	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	67	80	+	10.4655	3.5e-05	0.0278	GCCCGCGCCCCCCG
KLF14	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	69	82	-	10.4655	3.5e-05	0.0278	TGTGACGCCCACCC
ATF4	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	33	45	+	11.2951	3.5e-05	0.506	CGCTGACGTAACC
ATF4	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	41	-	11.2951	3.5e-05	0.506	CGCTGACGTAACC
ATF4	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	74	86	+	11.2951	3.5e-05	0.506	CGCTGACGTAACC
ATF4	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	82	-	11.2951	3.5e-05	0.506	CGCTGACGTAACC
Gmeb1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	23	39	+	11.25	3.5e-05	0.584	GTGCGTGCGTACGTGCG
Gmeb1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	76	92	-	11.25	3.5e-05	0.584	GTGCGTGCGTACGTGCG
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	12	28	+	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	12	28	+	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	12	28	+	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	12	28	+	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	87	103	+	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	12	28	-	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
PAX9	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	87	103	-	3.34545	3.5e-05	0.463	CGTCACGCGACGCTGGC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	94	106	+	11.8197	3.5e-05	0.0586	CGCCTCGCGGGCG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	25	39	+	10.0492	3.5e-05	0.0499	CGCCCCGCCCACCCA
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	73	82	+	12.18	3.5e-05	0.744	TTTGCGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	73	82	+	12.18	3.5e-05	0.744	TTTGCGCAAC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	16	30	+	10.8571	3.51e-05	0.108	AGGGGGAAGGGGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	16	30	+	10.8571	3.51e-05	0.108	AGGGGGAAGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	16	30	+	10.8571	3.51e-05	0.108	AGGGGGAAGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	24	38	+	10.8571	3.51e-05	0.108	GGAGGGCGGAGTCCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	24	38	+	10.8571	3.51e-05	0.108	GGAGGGCGGAGTCCG
CREB3	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	79	92	-	11.1857	3.51e-05	0.224	CTGCCACATCACTG
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	3	14	-	12.0241	3.51e-05	1	AAATGTAAATGA
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	3	14	-	12.0241	3.51e-05	1	AAATGTAAATGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	39	56	+	-10.8947	3.51e-05	0.0358	GGAGGGACCGCAGGGAGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	55	72	+	-10.8947	3.51e-05	0.0358	GGAGGGACCGCAGGGAGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	43	60	-	-10.8947	3.51e-05	0.0358	GGAGGGACCGCAGGGAGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	59	76	-	-10.8947	3.51e-05	0.0358	GGAGGGACCGCAGGGAGG
HOXB13	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	47	56	+	12.3273	3.51e-05	1	GCAATAAAAT
SP3	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	34	+	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	40	+	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	56	+	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	61	+	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	68	78	+	12.0325	3.51e-05	0.0169	GCCACGCCCTG
SP3	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	25	35	-	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	59	69	-	12.0325	3.51e-05	0.0169	GTCCCGCCCAC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	59	72	+	12.1818	3.51e-05	0.0463	CGAACTCGGGCCTC
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	27	38	+	12.05	3.51e-05	1	CTCATGCAAATC
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	36	47	+	12.05	3.51e-05	1	CTCATGCTAATT
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	36	47	+	12.05	3.51e-05	1	CTCATGCTAATT
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	34	45	-	12.05	3.51e-05	1	CTCATGCAAATC
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	47	58	-	12.05	3.51e-05	1	CTCATGCTAATT
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	47	58	-	12.05	3.51e-05	1	CTCATGCTAATT
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	24	40	+	6.16364	3.51e-05	0.0217	CCCGCCCCGCCCTCGGC
SP4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	75	91	+	6.16364	3.51e-05	0.0217	CCTGCCCCACCCCCACC
SP4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	24	40	-	6.16364	3.51e-05	0.0217	CCTGCCCCACCCCCACC
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	12	+	13.1011	3.51e-05	0.191	TCCACGTGA
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	15	23	-	13.1011	3.51e-05	0.191	TCCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	15	23	-	13.1011	3.51e-05	0.191	TCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	15	23	-	13.1011	3.51e-05	0.191	TCCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	15	23	-	13.1011	3.51e-05	0.191	TCCACGTGA
BHLHE23	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	14	25	-	11.8364	3.51e-05	1	TGCCATATGCTC
BHLHE23	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	90	101	+	11.8364	3.51e-05	1	TGCCATATGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	80	94	-	11.5818	3.51e-05	0.106	GGCTCCCCGCAGATT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	80	94	-	11.5818	3.51e-05	0.106	GGCTCCCCGCAGATT
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	11	30	-	5.82569	3.51e-05	0.0514	ACTCTCACCACCCACTCCCT
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	55	74	-	5.82569	3.51e-05	0.0514	ACTCTCACCACCCACTCCCT
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	41	60	+	5.82569	3.51e-05	0.0514	ACTCTCACCACCCACTCCCT
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	85	104	+	5.82569	3.51e-05	0.0514	ACTCTCACCACCCACTCCCT
NFKB2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	17	29	-	10.1515	3.51e-05	0.246	CCGGGATTTCCCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	+	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	-	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	-	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	+	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	+	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	+	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	+	12.2182	3.51e-05	0.0548	CGCCCCCGGGGT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	84	95	+	12.2182	3.51e-05	0.0548	TGCCCCTGGGCC
Hmx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	26	42	+	11.9146	3.51e-05	1	TCAATCAATTATACCAT
Hmx3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	26	42	+	11.9146	3.51e-05	1	TCAATCAATTATACCAT
Hmx3	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	94	110	+	11.9146	3.51e-05	1	TCAATCAATTATACCAT
MIXL1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.2708	3.51e-05	1	CCTAATTAGA
E2F4	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	10	20	+	12.431	3.51e-05	0.0451	TGGCGCGAAGC
E2F4	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	2	12	-	12.431	3.51e-05	0.0451	CGGCGCGAAAA
E2F4	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	7	17	-	12.431	3.51e-05	0.0451	TGGCGCGAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	58	68	-	12.431	3.51e-05	0.0451	TCGCGGGAGCA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	58	68	-	12.431	3.51e-05	0.0451	TCGCGGGAGCA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	58	68	-	12.431	3.51e-05	0.0451	TCGCGGGAGCA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	58	68	-	12.431	3.51e-05	0.0451	TCGCGGGAGCA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	98	108	+	12.431	3.51e-05	0.0451	TGGCGCGAAGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	98	108	+	12.431	3.51e-05	0.0451	TGGCGCGAAGC
E2F4	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	103	113	+	12.431	3.51e-05	0.0451	CGGCGCGAAAA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	4	17	+	11.6154	3.51e-05	0.0168	TCACCACCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	4	17	+	11.6154	3.51e-05	0.0168	TCACCACCGCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	11	24	+	11.6154	3.51e-05	0.0168	CCACCTCCGACGCA
EGR1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	9	22	-	11.6154	3.51e-05	0.0168	CCACCTCCGACGCA
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	24	37	+	11.6154	3.51e-05	0.0168	CCGCCGCCGCCTGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	33	46	-	11.6154	3.51e-05	0.0168	CTGCTTCCCCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	78	91	-	11.6154	3.51e-05	0.0168	CCGCCGCCGCCTGG
EGR1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	93	106	+	11.6154	3.51e-05	0.0168	CCACCTCCGACGCA
EGR1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	91	104	-	11.6154	3.51e-05	0.0168	CCACCTCCGACGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	82	92	+	12.4545	3.51e-05	0.0508	AGCCTCAAGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	82	92	+	12.4545	3.51e-05	0.0508	AGCCTCAAGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	82	92	+	12.4545	3.51e-05	0.0508	AGCCTCAAGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	82	92	+	12.4545	3.51e-05	0.0508	AGCCTCAAGCC
Creb5	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	83	94	-	10.5818	3.51e-05	0.167	CATTACATCATT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	15	24	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	15	24	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	15	24	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	15	24	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	59	68	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	66	75	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	72	81	-	12.5714	3.51e-05	0.0158	CCCACGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	96	105	-	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	10	19	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	10	19	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	14	23	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	26	35	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	26	35	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	26	35	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	26	35	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	34	43	+	12.5714	3.51e-05	0.0158	CCCACGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	56	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	56	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	91	100	+	12.5714	3.51e-05	0.0158	ACCACGCCCC
SP2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	70	+	11.7586	3.51e-05	0.00967	GCCCCACCCCGAGGG
SP2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	45	59	-	11.7586	3.51e-05	0.00967	GCCCCACCCCGAGGG
SPIC	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	22	35	+	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	32	45	+	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	32	45	+	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
SPIC	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	83	-	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	93	-	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	93	-	11.9296	3.51e-05	0.214	AGTAACAGGAAGTT
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	95	108	+	12.4828	3.51e-05	0.227	CTTCAGAGAAATGC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	18	30	+	4.69388	3.51e-05	0.233	AGCGGGTTCCCCA
EGR4	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	32	47	+	11.4545	3.51e-05	0.0374	CTCCACCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	19	34	-	11.4545	3.51e-05	0.0374	TCACGCCGGCGCAGTT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	19	34	-	11.4545	3.51e-05	0.0374	TCACGCCGGCGCAGTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	19	34	-	11.4545	3.51e-05	0.0374	TCACGCCGGCGCAGTT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	19	34	-	11.4545	3.51e-05	0.0374	TCACGCCGGCGCAGTT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	52	67	+	11.4545	3.51e-05	0.0374	TCCCCCCCACCCCACC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	52	67	+	11.4545	3.51e-05	0.0374	TCCCCCCCACCCCACC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	52	67	+	11.4545	3.51e-05	0.0374	TCCCCCCCACCCCACC
EGR4	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	68	83	-	11.4545	3.51e-05	0.0374	CTCCACCCCCGCCCCC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	+	11.569	3.51e-05	0.0554	GCCCCCCCAGGCA
SP1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	11	21	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	13	23	-	12.2692	3.52e-05	0.011	CCCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	35	45	-	12.2692	3.52e-05	0.011	CCCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	35	45	-	12.2692	3.52e-05	0.011	CCCCCGCCCAG
SP1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	40	50	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	65	75	+	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	61	71	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	61	71	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	61	71	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	61	71	-	12.2692	3.52e-05	0.011	GCTCCACCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	94	104	+	12.2692	3.52e-05	0.011	GCTCCACCCCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	84	98	+	8.43103	3.52e-05	0.0347	CCCCGGCCCCGCGTC
Dmbx1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	80	96	-	12.4342	3.52e-05	1	AGGTTGGGATTATGAAT
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	12.3966	3.52e-05	0.0877	AGCGGAAGTA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	-	12.3077	3.52e-05	0.0703	CGCCCCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	-	12.3077	3.52e-05	0.0703	CGCCCCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	+	12.3077	3.52e-05	0.0703	CGCCTAGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	+	12.3077	3.52e-05	0.0703	CGCCTAGGGCT
Hes1	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	17	26	-	10.4476	3.52e-05	0.0848	GGCACGCGGG
Hes1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	21	30	-	10.4476	3.52e-05	0.0848	GGCACGCGGG
Hes1	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	10.4476	3.52e-05	0.0848	CGCACGTGAC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	10.4476	3.52e-05	0.0848	CGCACGTGAC
SP8	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	5	16	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	18	29	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	18	29	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	18	29	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	18	29	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	18	29	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	10	21	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	10	21	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	10	21	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	10	21	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	25	36	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	30	41	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	37	48	+	11.9474	3.52e-05	0.0252	GCCCCGCCGCCT
SP8	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	30	41	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	67	78	-	11.9474	3.52e-05	0.0252	GCCCCGCCGCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	74	85	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	79	90	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	94	105	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	86	97	-	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
SP8	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	99	110	+	11.9474	3.52e-05	0.0252	GCCCCGCCCCAA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	51	67	-	11.1633	3.52e-05	0.338	GGGTGGGGGAAGGGGCA
Myc	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	20	29	+	13.1636	3.52e-05	0.364	CCATGTGGGC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	36	+	13.1636	3.52e-05	0.364	CCACGTGCGC
Myc	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	36	45	+	13.1636	3.52e-05	0.364	CCATGTGGGC
Myc	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	54	+	13.1636	3.52e-05	0.364	CCACGTGCGC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	38	-	13.1636	3.52e-05	0.364	CCACGTGCGC
Myc	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	61	70	-	13.1636	3.52e-05	0.364	CCACGTGCGC
Myc	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	70	79	-	13.1636	3.52e-05	0.364	CCATGTGGGC
Myc	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	86	95	-	13.1636	3.52e-05	0.364	CCATGTGGGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	46	60	+	9.78571	3.52e-05	0.101	GGCCTCCCCGTGCGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	55	69	-	9.78571	3.52e-05	0.101	GGCCTCCCCGTGCGC
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	84	94	+	12.1515	3.52e-05	0.0462	TCCCCCACCCT
INSM1	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	89	100	+	11.6939	3.52e-05	0.154	GGTTAGGGGTTG
RREB1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	75	94	+	5.81651	3.52e-05	0.0514	CTCCCAACCAAGCCCTCCAG
GLIS2	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	17	30	-	9.86885	3.52e-05	0.177	CGCCCCCTGCCGAG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	30	43	-	9.86885	3.52e-05	0.177	GACCCCCTTCGCTG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	30	43	-	9.86885	3.52e-05	0.177	GACCCCCTTCGCTG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	44	62	+	10.1803	3.52e-05	0.104	TCGCCTGCAGCTGGAGGCA
CTCF	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	65	83	+	10.1803	3.52e-05	0.104	CCGCCTCCAGACGTCAGTC
ELF4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	91	102	+	10.7213	3.52e-05	0.0972	TTCCCGGAAGCC
ELF4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	24	-	10.7213	3.52e-05	0.0972	TTCCCGGAAGCC
ELF1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	36	47	+	10.8545	3.52e-05	0.0999	AAACCGGAAACC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	79	-	10.8545	3.52e-05	0.0999	AAACCGGAAACC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	79	-	10.8545	3.52e-05	0.0999	AAACCGGAAACC
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	65	82	-	10.2308	3.52e-05	0.649	AGCAAGTCACAACACTTC
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	65	82	-	10.2308	3.52e-05	0.649	AGCAAGTCACAACACTTC
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	101	114	-	8.57895	3.52e-05	0.56	ACTACAGCTGGCCC
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	101	114	-	8.57895	3.52e-05	0.56	ACTACAGCTGGCCC
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	19	29	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	19	29	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	19	29	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	19	29	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	26	36	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	26	36	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	26	36	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	26	36	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	32	42	-	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	49	59	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	49	59	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	73	83	+	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	79	89	-	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ETV2	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	86	96	-	11.9016	3.52e-05	0.136	GAGCGGAAGTG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	54	74	-	10.898	3.52e-05	0.0136	GGTGGAGCTGGGAGAGGGTCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	9	29	+	10.898	3.52e-05	0.0136	GGGAGAGAAGGGAGGAGGTAA
MLX	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	-	11.6714	3.52e-05	0.212	ATCACGTGGA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	+	12.5273	3.52e-05	0.168	TCTGACTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	+	12.5273	3.52e-05	0.168	TCTGACTCATC
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	+	12.5273	3.52e-05	0.168	TCTGACTCATC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	89	100	+	12.2	3.52e-05	0.0893	TCCCTCCAGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	15	26	-	12.2	3.52e-05	0.0893	TCCCTCCAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	23	34	-	12.2	3.52e-05	0.0893	TCCCTCCAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	23	34	-	12.2	3.52e-05	0.0893	TCCCTCCAGGCG
USF1	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	67	77	+	12.2857	3.52e-05	0.14	TCCATGTGACT
ELK4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	53	63	-	12.3636	3.52e-05	0.0524	CGGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	24	34	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	47	57	+	12.3636	3.52e-05	0.0524	CGGCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	47	57	+	12.3636	3.52e-05	0.0524	CGGCTTCCGCT
ELK4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	52	62	+	12.3636	3.52e-05	0.0524	CGGCTTCCGCT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	61	71	+	12.3636	3.52e-05	0.0524	CCGTTTCCGGA
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	47	67	-	10.5323	3.53e-05	0.162	TCCCAGTTCCTTTTTTACCTC
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	47	67	-	10.5323	3.53e-05	0.162	TCCCAGTTCCTTTTTTACCTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	47	67	-	10.5323	3.53e-05	0.162	TCCCAGTTCCTTTTTTACCTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	47	67	-	10.5323	3.53e-05	0.162	TCCCAGTTCCTTTTTTACCTC
ZIC1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	27	40	-	8.2766	3.53e-05	0.0959	CCACCCCTGCGGGG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	72	85	+	8.2766	3.53e-05	0.0959	GAAGCCCCGCAGTG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	72	85	+	8.2766	3.53e-05	0.0959	GAAGCCCCGCAGTG
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	49	61	+	12	3.53e-05	0.359	CCGTCTCTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	83	95	+	12	3.53e-05	0.359	CCGTCTCTCTCCC
SP4	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	81	97	+	6.14545	3.53e-05	0.0218	GAGTCCCCGCCTCCCTG
SP4	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	18	34	-	6.14545	3.53e-05	0.0218	GAGTCCCCGCCTCCCTG
ELF3	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	69	81	+	10.0517	3.53e-05	0.134	GAGGAGGAAGTGA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	24	37	+	10.4483	3.53e-05	0.0279	CTCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	38	51	+	10.4483	3.53e-05	0.0279	CTCCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	42	55	-	10.4483	3.53e-05	0.0279	CTCCCCGCCCCCCC
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	86	95	-	12.6463	3.53e-05	0.472	CTCAGCCCAT
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	86	95	-	12.6463	3.53e-05	0.472	CTCAGCCCAT
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	13	22	+	12.6463	3.53e-05	0.472	CTCAGCCCAT
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	13	22	+	12.6463	3.53e-05	0.472	CTCAGCCCAT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	46	60	+	10.0328	3.53e-05	0.0501	TGCCCCGCCCTGGCA
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	46	60	+	10.0328	3.53e-05	0.0501	TGCCCCGCCCTGGCA
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	44	55	-	12.41	3.53e-05	0.923	TGTTTACTGAAG
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	49	+	12.41	3.53e-05	0.923	TGTTTACTGAAG
SOX8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	40	55	+	-9.51515	3.53e-05	1	CAAAATCTTCAGTGAT
SOX8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	40	55	+	-9.51515	3.53e-05	1	CAAAATCTTCAGTGAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	23	33	-	12.6327	3.53e-05	0.18	GCATGAGTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	39	49	+	12.6327	3.53e-05	0.18	GCATGAGTCAG
JUNB	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	37	47	-	12.6327	3.53e-05	0.18	GCATGAGTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	68	78	+	12.6327	3.53e-05	0.18	GCATGAGTCAG
PAX5	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	15	33	+	11.6774	3.53e-05	0.144	AGAAGTAGTCAGGCGAGGA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	25	44	-	5.80734	3.53e-05	0.0514	CCCACCCCCCCCCGCCCCGC
RREB1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	71	90	+	5.80734	3.53e-05	0.0514	CCCACCCCCCCCCGCCCCGC
ATF4	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	6	18	-	11.2787	3.53e-05	0.506	GAATGAGGCAATG
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	58	75	+	1.12069	3.53e-05	0.667	GACGTGTTACGTCACGGT
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	-	11.449	3.53e-05	0.677	ATTACGCAAG
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	13	27	-	11.8462	3.53e-05	0.426	GGGTCGCGCTGCCCC
IRF7	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	74	87	-	10.2903	3.53e-05	0.664	GGGAAAGTGAAAGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	21	+	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	25	33	-	12.3488	3.53e-05	0.433	AACAGGTGG
SNAI2	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	57	+	12.3488	3.53e-05	0.433	AACAGGTGG
HES7	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	6	17	+	5.60345	3.53e-05	0.189	GCCCACGTGCCA
HES7	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	12	23	+	5.60345	3.53e-05	0.189	CGGCGCGCGCCG
HES7	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	12	23	-	5.60345	3.53e-05	0.189	CGGCGCGCGCCG
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	44	55	-	5.60345	3.53e-05	0.189	CGCCACCTGCCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	44	55	-	5.60345	3.53e-05	0.189	CGCCACCTGCCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	44	55	-	5.60345	3.53e-05	0.189	CGCCACCTGCCA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	44	55	-	5.60345	3.53e-05	0.189	CGCCACCTGCCA
HES7	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	60	71	+	5.60345	3.53e-05	0.189	CGCCACCTGCCA
HES7	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	92	103	+	5.60345	3.53e-05	0.189	CGGCGCGCGCCG
HES7	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	92	103	-	5.60345	3.53e-05	0.189	CGGCGCGCGCCG
SPI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	67	80	+	5.30909	3.53e-05	0.152	CGGAACCGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	67	80	+	5.30909	3.53e-05	0.152	CGGAACCGGAAGTA
SPI1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	35	48	-	5.30909	3.53e-05	0.152	CGGAACCGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	44	57	-	5.30909	3.53e-05	0.152	GAAAAAAGGAAGAG
TGIF1	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	68	79	+	2.75	3.53e-05	0.837	TGAGAGGCGTCA
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	36	47	-	2.75	3.53e-05	0.837	TGAGAGGCGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	36	47	-	2.75	3.53e-05	0.837	TGAGAGGCGTCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	102	113	-	12.0645	3.53e-05	0.281	CCGACCCCCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	102	113	-	12.0645	3.53e-05	0.281	CCGACCCCCGCT
REST	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	56	76	-	6.87755	3.53e-05	0.208	GCCTGCACCCCGGATGGCCCC
REST	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	62	82	-	6.87755	3.53e-05	0.208	TGCAGAGCCTGGGTCAGATCA
REST	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	39	59	+	6.87755	3.53e-05	0.208	GCCTGCACCCCGGATGGCCCC
ERF	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.1571	3.53e-05	0.0915	GCCGGATGTG
ERF	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.1571	3.53e-05	0.0915	GCCGGATGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.1571	3.53e-05	0.0915	GCCGGATGTG
ERF	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.1571	3.53e-05	0.0915	GCCGGATGTG
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	63	74	-	9.73394	3.53e-05	0.848	TGACAGGAGACA
TGIF2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	-	9.73394	3.53e-05	0.848	AGGCATGTGTCA
TGIF2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	+	9.73394	3.53e-05	0.848	AGGCATGTGTCA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	+	12.1224	3.53e-05	0.0857	CGCCCGGAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	+	12.1224	3.53e-05	0.0857	CGCCCGGAGGCC
TFAP2C	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	+	12.1224	3.53e-05	0.0857	CGCCCGGAGGCC
TFAP2C	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	-	12.1224	3.53e-05	0.0857	CGCCCGGAGGCC
TFAP2C	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	-	12.1224	3.53e-05	0.0857	CGCCCGGAGGCC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	66	76	+	12.1091	3.53e-05	0.748	AGGGGTGCAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	66	76	+	12.1091	3.53e-05	0.748	AGGGGTGCAGC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	30	43	+	12.1667	3.54e-05	0.0465	TGTCCCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	59	72	+	12.1667	3.54e-05	0.0465	CCAACTCGGGCCTC
JUN	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	78	90	+	12.0408	3.54e-05	0.301	GTGCTGATGCCAT
JUN	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	25	37	-	12.0408	3.54e-05	0.301	GTGCTGATGCCAT
Npas2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	12.7049	3.54e-05	0.333	GGCACGTGCG
Npas2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	12.7049	3.54e-05	0.333	GGCACGTGCG
Npas2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	12.7049	3.54e-05	0.333	GGCACGTGCG
Npas2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	12.7049	3.54e-05	0.333	GGCACGTGCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	19	28	+	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	19	28	+	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	19	28	+	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	43	52	-	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	43	52	-	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	43	52	-	11.7798	3.54e-05	0.0491	AACCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	87	96	-	11.7798	3.54e-05	0.0491	AACCCCCCCC
NKX2-3	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	72	81	+	12.3654	3.54e-05	1	ACCACTTCAC
EGR3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	16	30	-	8.41379	3.54e-05	0.0347	CCCCGCCCCGGCCCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	33	47	+	8.41379	3.54e-05	0.0347	CCCAGCCCCCGCGAT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	53	67	-	8.41379	3.54e-05	0.0347	TGGCGCCCCCGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	53	67	-	8.41379	3.54e-05	0.0347	TGGCGCCCCCGCCTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	53	67	-	8.41379	3.54e-05	0.0347	TGGCGCCCCCGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	53	67	-	8.41379	3.54e-05	0.0347	TGGCGCCCCCGCCTC
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	85	99	+	8.41379	3.54e-05	0.0347	CCCCGCCCCGGCCCG
ZNF143	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	19	34	-	4.08621	3.54e-05	0.299	CTCCCAGCAAGCTCTG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	88	103	-	4.08621	3.54e-05	0.299	TTCCCAGGGTGCTCCC
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	58	71	-	11.6724	3.54e-05	1	GCTATGCAAATAAA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	-	11.5517	3.54e-05	0.0554	TGCCTGGGAGGCT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	+	11.5517	3.54e-05	0.0554	TGCCTGGGAGGCT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	+	11.5517	3.54e-05	0.0554	TGCCTGGGAGGCT
SP1	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	29	39	+	12.25	3.54e-05	0.0111	AGCCCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	47	57	+	12.25	3.54e-05	0.0111	CGCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	47	57	+	12.25	3.54e-05	0.0111	CGCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	59	69	+	12.25	3.54e-05	0.0111	CGCCCTCCCCT
ETV3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	12.1408	3.54e-05	0.104	ACCGGAAGCT
ETV3	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	12.1408	3.54e-05	0.104	ACCGGAAGCT
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	12.1408	3.54e-05	0.104	ACCGGAAGCT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	12.1408	3.54e-05	0.104	ACCGGAAGCT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	12.1408	3.54e-05	0.104	ACCGGAAGCT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	12.1408	3.54e-05	0.104	ACCGGAAGCT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	14	31	+	-10.9211	3.54e-05	0.036	AGAAGGGAGGAGGTAAGC
Foxo1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	18	28	-	12.5517	3.54e-05	0.895	GGCTGTTTATA
SP3	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	43	+	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	7	17	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	29	39	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	29	39	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	52	62	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	52	62	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	59	69	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
SP3	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	72	82	-	12.0244	3.54e-05	0.0169	GCCCCACCTCC
TFCP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.0.0	43	52	-	12.197	3.54e-05	1	AAACCAGTTA
TFCP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.1.0	43	52	-	12.197	3.54e-05	1	AAACCAGTTA
TFCP2	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	103	112	-	12.197	3.54e-05	1	AAACCAGTTA
Hes2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	15	27	+	11.4444	3.54e-05	0.475	CCCTGACACGTGG
Hes2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	37	49	+	11.4444	3.54e-05	0.475	GGCTGACACGTGG
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	53	-	11.4444	3.54e-05	0.475	CGTAGGCACGTGT
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	53	-	11.4444	3.54e-05	0.475	CGTAGGCACGTGT
Hes2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	66	78	-	11.4444	3.54e-05	0.475	GGCTGACACGTGG
Hes2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	100	112	-	11.4444	3.54e-05	0.475	CCCTGACACGTGG
HSF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	62	74	+	11.878	3.54e-05	1	TTCTCGAAGTGTC
HSF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	62	74	+	11.878	3.54e-05	1	TTCTCGAAGTGTC
HSF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	62	74	+	11.878	3.54e-05	1	TTCTCGAAGTGTC
HSF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	62	74	+	11.878	3.54e-05	1	TTCTCGAAGTGTC
Neurog1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	10.7473	3.54e-05	1	AGCATATGGC
Neurog1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	10.7473	3.54e-05	1	AGCATATGGC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	9	19	+	11.7241	3.54e-05	0.0147	CCCCCCCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	9	19	+	11.7241	3.54e-05	0.0147	CCCCCCCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	26	36	-	11.7241	3.54e-05	0.0147	CCCCCCCCCAC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	60	74	+	11.5636	3.54e-05	0.106	CCCCCCCTGCCGCTG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	31	44	-	9.85246	3.54e-05	0.177	GCCCCCCCACCCCG
JUND	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	34	44	-	12.3191	3.54e-05	0.182	AGTGAGTCAGG
JUND	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	35	45	-	12.3191	3.54e-05	0.182	AGTGAGTCAGG
JUND	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	70	80	+	12.3191	3.54e-05	0.182	AGTGAGTCAGG
JUND	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	71	81	+	12.3191	3.54e-05	0.182	AGTGAGTCAGG
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	31	-	11.898	3.54e-05	0.285	TTCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	31	-	11.898	3.54e-05	0.285	TTCCACGTGGC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	43	-	11.623	3.54e-05	0.118	TGTCCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	43	-	11.623	3.54e-05	0.118	TGTCCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	43	-	11.623	3.54e-05	0.118	TGTCCGGAAGTA
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	43	-	11.623	3.54e-05	0.118	TGTCCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	58	69	+	11.623	3.54e-05	0.118	CACCCGGAAGGC
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	58	69	+	11.623	3.54e-05	0.118	CACCCGGAAGGC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	58	69	+	11.623	3.54e-05	0.118	CACCCGGAAGGC
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	58	69	+	11.623	3.54e-05	0.118	CACCCGGAAGGC
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	58	69	+	11.623	3.54e-05	0.118	CACCCGGAAGGC
Rfx1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	44	57	-	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	58	71	+	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	58	71	+	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	58	71	+	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	58	71	+	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	58	71	+	11.4138	3.54e-05	0.192	CCCGCCCAGGCAAC
TP63	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	29	46	+	1.10345	3.54e-05	0.667	CGCAAGTCCCGGCTCGCC
TP63	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	69	86	-	1.10345	3.54e-05	0.667	CGCAAGTCCCGGCTCGCC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	12.2927	3.54e-05	0.14	CGCACGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	12.2927	3.54e-05	0.14	CGCACGTGAC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	70	80	+	12.1364	3.54e-05	0.0464	GCCCCCGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	34	44	-	12.1364	3.54e-05	0.0464	GCCCCCGCCCA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	33	+	12.9184	3.54e-05	0.143	GGCAGCTGTGTCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	33	+	12.9184	3.54e-05	0.143	GGCAGCTGTGTCA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	33	+	12.9184	3.54e-05	0.143	GGCAGCTGTGTCA
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	33	+	12.9184	3.54e-05	0.143	GGCAGCTGTGTCA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	24	36	-	12.9184	3.54e-05	0.143	CCCAGCTGCTGGG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	24	36	-	12.9184	3.54e-05	0.143	CCCAGCTGCTGGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	16	30	+	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	16	30	+	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	16	30	+	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	16	30	+	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	61	75	+	11.7414	3.54e-05	0.00972	GTCCCGCCCAGCCTA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	35	49	-	11.7414	3.54e-05	0.00972	TTCCCTCCTCCCATC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	35	49	-	11.7414	3.54e-05	0.00972	TTCCCTCCTCCCATC
SP2	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	40	54	-	11.7414	3.54e-05	0.00972	GTCCCGCCCAGCCTA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	56	70	-	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	56	70	-	11.7414	3.54e-05	0.00972	TCCCCACCCCGCCCA
SP2	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	99	113	-	11.7414	3.54e-05	0.00972	CCTCCGCCTCGTCCT
Rarg(var.2)	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	32	48	+	-2.65455	3.54e-05	1	GGGGTCAGCCAGGCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	52	68	+	6.12727	3.55e-05	0.0218	CCCGCCCCCCCCCCCTG
SP4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	55	71	+	6.12727	3.55e-05	0.0218	ACGGTCCCGCCCCTTCC
SP4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	44	60	-	6.12727	3.55e-05	0.0218	ACGGTCCCGCCCCTTCC
Nfe2l2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	16	30	+	11.1515	3.55e-05	0.263	TGCAGTGACTCTGCT
Nfe2l2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	85	99	-	11.1515	3.55e-05	0.263	TGCAGTGACTCTGCT
Dlx1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	10.1842	3.55e-05	1	AATAATTAGC
BATF3	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	35	48	+	3.4697	3.55e-05	0.153	GCATGACGTCACAC
BATF3	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	40	53	+	3.4697	3.55e-05	0.153	GCATGACGTCACAC
BATF3	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	62	75	-	3.4697	3.55e-05	0.153	GCATGACGTCACAC
BATF3	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	67	80	-	3.4697	3.55e-05	0.153	GCATGACGTCACAC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	45	57	+	11.3485	3.55e-05	0.718	GTTACTAAGTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	45	57	+	11.3485	3.55e-05	0.718	GTTACTAAGTAAC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	67	76	+	12.3443	3.55e-05	0.2	CGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	67	76	+	12.3443	3.55e-05	0.2	CGGCACGTGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	99	112	+	11.5962	3.55e-05	0.017	CGGCAGCCCACGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	94	107	-	11.5962	3.55e-05	0.017	CGCACGCCCACTGC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	18	29	+	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	18	29	+	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	18	29	+	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	18	29	+	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	46	-	10.8364	3.55e-05	0.0999	GAGGCGGAAGTC
ELF1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	53	64	+	10.8364	3.55e-05	0.0999	GAGGCGGAAGTC
ELF1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	62	-	10.8364	3.55e-05	0.0999	GAGGCGGAAGTC
ELF1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	64	-	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	69	80	+	10.8364	3.55e-05	0.0999	GAGGCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	91	-	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	91	-	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	91	-	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	91	-	10.8364	3.55e-05	0.0999	AAACAGGAAGTT
GLI2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	28	39	+	11.6379	3.55e-05	0.33	GCGACGACACAG
GLI2	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	76	87	-	11.6379	3.55e-05	0.33	GCGACGACACAG
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	24	37	-	9.22857	3.55e-05	0.151	GGCTTACGTCACAA
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	54	67	-	9.22857	3.55e-05	0.151	GGCTTACGTCACAA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	21	32	-	11.9211	3.55e-05	0.0254	GCCCCACCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	21	32	-	11.9211	3.55e-05	0.0254	GCCCCACCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	21	32	-	11.9211	3.55e-05	0.0254	GCCCCACCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	21	32	-	11.9211	3.55e-05	0.0254	GCCCCACCCCTT
Gfi1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	26	35	+	11.5366	3.55e-05	0.488	CCAATCAGTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	26	35	+	11.5366	3.55e-05	0.488	CCAATCAGTG
Gfi1	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	28	37	-	11.5366	3.55e-05	0.488	CCAATCAGTG
Gfi1	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	80	89	-	11.5366	3.55e-05	0.488	CCAATCAGTG
POU3F1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	46	57	+	12.012	3.55e-05	1	CTATGCAAATAA
POU3F1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	58	69	-	12.012	3.55e-05	1	CTATGCAAATAA
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	59	70	-	12.012	3.55e-05	1	CTATGCAAATAA
GATA1::TAL1	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	58	75	+	12.0909	3.55e-05	0.915	GTTATCGGCCGGGTCCAG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	8	23	+	11.4364	3.55e-05	0.0374	CACCGCCTCCGCCCTT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	8	23	+	11.4364	3.55e-05	0.0374	CACCGCCTCCGCCCTT
EGR4	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	11	26	-	11.4364	3.55e-05	0.0374	CTCCGCACACGCGCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	27	42	+	11.4364	3.55e-05	0.0374	CCCCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	29	44	+	11.4364	3.55e-05	0.0374	CCCAGCCCACGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	29	44	+	11.4364	3.55e-05	0.0374	CCCAGCCCACGCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	67	-	11.4364	3.55e-05	0.0374	CCCCGCCCCCCCGGCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	67	-	11.4364	3.55e-05	0.0374	CCCCGCCCCCCCGGCA
ELF3	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	24	36	+	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	34	46	+	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	34	46	+	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	43	55	+	10.0345	3.55e-05	0.134	CGCCCGGAAGTTA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	60	72	-	10.0345	3.55e-05	0.134	CGCCCGGAAGTTA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	60	72	-	10.0345	3.55e-05	0.134	CGCCCGGAAGTTA
ELF3	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	69	81	-	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	79	91	-	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	79	91	-	10.0345	3.55e-05	0.134	TAACAGGAAGTTG
NR2C2	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	3	17	+	10.8286	3.55e-05	0.108	TGAGGTGAGAGGGAG
NRF1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	24	34	+	11.5818	3.55e-05	0.0148	GCGCACGTGCA
NRF1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	91	-	11.5818	3.55e-05	0.0148	GCGCACGTGCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	19	30	+	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	27	38	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	27	38	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	27	38	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	27	38	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	29	40	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	30	41	-	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	75	86	+	12.2	3.55e-05	0.0548	CGCCCCCAGCCC
RFX4	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	14	29	-	11.2273	3.55e-05	0.214	TGTAGTCGCGGCAACC
RFX4	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	86	101	+	11.2273	3.55e-05	0.214	TGTAGTCGCGGCAACC
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	+	7.3617	3.55e-05	0.952	CGGAACGTTTCGTCCTC
NR3C2	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	63	79	+	7.3617	3.55e-05	0.952	TGGAACTTGAAGTTCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	47	57	-	12.0081	3.55e-05	0.0169	GACACGCCCAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.0909	3.55e-05	0.23	CACACGTGAT
Stat4	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	2	15	-	12.4655	3.55e-05	0.227	GTTCCTGGAAGCAG
Stat4	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	27	40	-	12.4655	3.55e-05	0.227	GTTCCTGGAAGCAG
Stat4	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	88	+	12.4655	3.55e-05	0.227	GTTCCTGGAAGCAG
Stat4	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	113	+	12.4655	3.55e-05	0.227	GTTCCTGGAAGCAG
E2F1	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	30	41	+	12.1148	3.55e-05	0.41	AATGGCGCCGAA
E2F1	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	45	56	-	12.1148	3.55e-05	0.41	AATGGCGCCGAA
E2F1	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	74	85	-	12.1148	3.55e-05	0.41	AATGGCGCCGAA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	65	81	-	5.31148	3.55e-05	0.563	AGGCCACTCCCAGGGCA
RARA(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	34	50	+	5.31148	3.55e-05	0.563	AGGCCACTCCCAGGGCA
STAT3	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	18	28	-	12.2041	3.56e-05	0.216	ATGCTGGGAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	104	114	-	12.2041	3.56e-05	0.216	ATGCTGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	104	114	-	12.2041	3.56e-05	0.216	ATGCTGGGAAT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	19	29	+	10.9483	3.56e-05	0.0791	CCGCCTGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	19	29	+	10.9483	3.56e-05	0.0791	CCGCCTGCGCA
OLIG3	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	15	24	+	12.1034	3.56e-05	1	AGCATATGGC
OLIG3	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	91	100	-	12.1034	3.56e-05	1	AGCATATGGC
Crx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	4	14	-	12.3966	3.56e-05	1	CAGGGGCTTAA
Crx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	4	14	-	12.3966	3.56e-05	1	CAGGGGCTTAA
Crx	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	16	26	+	12.3966	3.56e-05	1	AGGAGGATTAT
Esrra	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	14	24	+	9.45455	3.56e-05	0.862	GTGAAGGTCAG
Esrra	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	91	101	-	9.45455	3.56e-05	0.862	GTGAAGGTCAG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	2	16	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	20	34	-	8.39655	3.56e-05	0.0347	CCACGCCCCTGCAGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	20	34	-	8.39655	3.56e-05	0.0347	CCACGCCCCTGCAGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	24	38	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	24	38	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	24	38	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	46	60	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	46	60	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	46	60	-	8.39655	3.56e-05	0.0347	CTCCGCCCCCACCGC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	65	79	-	8.39655	3.56e-05	0.0347	GCCCGCCCACGAGCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	79	93	+	8.39655	3.56e-05	0.0347	GCCCGCCCACGAGCC
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	5	17	-	4.65306	3.56e-05	0.233	TGGGGAAATCCCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	5	17	-	4.65306	3.56e-05	0.233	TGGGGAAATCCCT
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	3	15	+	4.65306	3.56e-05	0.233	TGGGGAAATCCCT
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	109	-	12.2135	3.56e-05	1	GGACCATATGTA
ZIC3	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	35	49	+	9.75714	3.56e-05	0.101	CACGCCCCGGCGTGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	74	88	+	9.75714	3.56e-05	0.101	CGCCTCCCCCCGCGT
ZIC3	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	27	41	-	9.75714	3.56e-05	0.101	CGCCTCCCCCCGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	65	79	-	9.75714	3.56e-05	0.101	CCCTCCCCGCAGCTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	65	79	-	9.75714	3.56e-05	0.101	CCCTCCCCGCAGCTC
ZIC3	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	66	80	-	9.75714	3.56e-05	0.101	CACGCCCCGGCGTGC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	96	-	10.8182	3.56e-05	0.0999	AGCCCGGATGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	96	-	10.8182	3.56e-05	0.0999	AGCCCGGATGTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	20	40	-	10.8776	3.56e-05	0.0137	GGAAAAGGGAAAAAAAAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	44	-	10.8776	3.56e-05	0.0137	CGGGGGGCGGGGGGGGGGGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	66	86	-	10.8776	3.56e-05	0.0137	GAGGGAGGCGGTGGGTGGCAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	83	103	-	10.8776	3.56e-05	0.0137	GAGGCTGCGGAGGAGAGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	12	32	+	10.8776	3.56e-05	0.0137	GAGGCTGCGGAGGAGAGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	12	32	+	10.8776	3.56e-05	0.0137	GAGGCTGCGGAGGAGAGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	12	32	+	10.8776	3.56e-05	0.0137	GAGGCTGCGGAGGAGAGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	12	32	+	10.8776	3.56e-05	0.0137	GAGGCTGCGGAGGAGAGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	13	33	+	10.8776	3.56e-05	0.0137	AGGGGTGGGGGATGGTGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	13	33	+	10.8776	3.56e-05	0.0137	AGGGGTGGGGGATGGTGGTGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	13	33	+	10.8776	3.56e-05	0.0137	AGGGGTGGGGGATGGTGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	29	49	+	10.8776	3.56e-05	0.0137	GAGGGAGGCGGTGGGTGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	29	49	+	10.8776	3.56e-05	0.0137	GAGGGAGGCGGTGGGTGGCAG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	5	24	-	5.77982	3.56e-05	0.0514	CTCCCAGTCACCCACTCAGC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	5	24	-	5.77982	3.56e-05	0.0514	CTCCCAGTCACCCACTCAGC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	5	24	-	5.77982	3.56e-05	0.0514	CTCCCAGTCACCCACTCAGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	5	24	-	5.77982	3.56e-05	0.0514	CTCCCAGTCACCCACTCAGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	90	109	-	5.77982	3.56e-05	0.0514	AGGCAACACACCACCCGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	90	109	-	5.77982	3.56e-05	0.0514	AGGCAACACACCACCCGCCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	65	77	-	11.9836	3.56e-05	0.359	CTGTCTAGCTCAT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	19	31	+	11.9836	3.56e-05	0.359	CTGTCTAGCTCAT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	19	31	+	11.9836	3.56e-05	0.359	CTGTCTAGCTCAT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	63	76	+	10.7213	3.56e-05	0.365	ACTCCCAGGAGAGA
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	63	76	+	10.7213	3.56e-05	0.365	ACTCCCAGGAGAGA
SP4	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	43	59	+	6.10909	3.56e-05	0.0219	GCGGTCCCGCCCACTGA
SP4	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	56	72	-	6.10909	3.56e-05	0.0219	GCGGTCCCGCCCACTGA
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	66	78	-	10.1061	3.56e-05	0.246	GGGGGGGTCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	66	78	-	10.1061	3.56e-05	0.246	GGGGGGGTCCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	66	78	-	10.1061	3.56e-05	0.246	GGGGGGGTCCCCG
HEY2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	11.9655	3.56e-05	0.16	GGCACGTGAC
HEY2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	11.9655	3.56e-05	0.16	GGCACGTGAC
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	+	12.1818	3.56e-05	0.0893	CGCCGGAGGGCA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	-	12.1818	3.56e-05	0.0893	CCCCTCCGGGCG
Mafb	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	62	73	-	12.191	3.56e-05	0.779	AAAGTGCTGATA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	+	12.1552	3.56e-05	0.119	AACAGCTGCC
NHLH1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	-	12.1552	3.56e-05	0.119	AACAGCTGCC
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	18	30	+	12.449	3.56e-05	0.367	GTGGGGTCAACAG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	14	24	-	12.5306	3.57e-05	0.107	AGCAGGTGACC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	14	24	-	12.5306	3.57e-05	0.107	AGCAGGTGACC
USF2	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	67	77	+	12.5306	3.57e-05	0.107	TCCATGTGACT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	+	11.5345	3.57e-05	0.0554	CGCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	+	11.5345	3.57e-05	0.0554	CGCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	+	11.5345	3.57e-05	0.0554	CGCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	+	11.5345	3.57e-05	0.0554	CGCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	+	11.5345	3.57e-05	0.0554	CGCCCGGTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	+	11.5345	3.57e-05	0.0554	CGCCCGGTGGGCG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	10.0577	3.57e-05	0.146	GTCACGCGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	10.0577	3.57e-05	0.146	GTCACGCGAC
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	38	52	-	11.5726	3.57e-05	1	CTAGGTTATGCAAAT
Pou5f1::Sox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	38	52	-	11.5726	3.57e-05	1	CTAGGTTATGCAAAT
HLF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	-	12.4068	3.57e-05	1	GGTTACGTCACC
HLF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	-	12.4068	3.57e-05	1	GGTTACGTCACC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	-	12.4068	3.57e-05	1	GGTTACGTCACC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	-	12.4068	3.57e-05	1	GGTTACGTCACC
ZBTB7B	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	64	75	-	11.9655	3.57e-05	0.365	GCGCCCCCCGGC
ZBTB7B	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	40	51	+	11.9655	3.57e-05	0.365	GCGCCCCCCGGC
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	12	24	-	12.069	3.57e-05	1	CAAATATGCATGA
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	12	24	-	12.069	3.57e-05	1	CAAATATGCATGA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	26	38	+	12.069	3.57e-05	1	CAAATATGCATGA
Gata1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	40	50	-	12.5102	3.57e-05	1	GTCTTATCTGG
Gata1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	40	50	-	12.5102	3.57e-05	1	GTCTTATCTGG
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	40	50	-	12.5102	3.57e-05	1	GTCTTATCTGG
Gata1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	40	50	-	12.5102	3.57e-05	1	GTCTTATCTGG
Gata1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	65	75	+	12.5102	3.57e-05	1	GTCTTATCTGG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	11.8163	3.57e-05	0.107	GTCACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	11.8163	3.57e-05	0.107	GTCACGTGAG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	11.8163	3.57e-05	0.107	GTCACGTGAG
TFE3	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	11.8163	3.57e-05	0.107	GTCACGTGAG
TFE3	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	11.8163	3.57e-05	0.107	GTCACGTGAG
TFE3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	11.8163	3.57e-05	0.107	GTCACGTGCT
TFE3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	11.8163	3.57e-05	0.107	GTCACGTGCT
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	14	30	+	-2.88764	3.57e-05	0.939	AGAGGTCAGAGGGCCGC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	14	30	+	-2.88764	3.57e-05	0.939	AGAGGTCAGAGGGCCGC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	49	63	-	11.1364	3.57e-05	0.263	CATTGTGACTCAGAA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	66	80	+	11.1364	3.57e-05	0.263	CATTGTGACTCAGAA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	43	62	-	5.77064	3.57e-05	0.0514	AAACAAAAAAACAACAACAA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	75	94	+	5.77064	3.57e-05	0.0514	CCCCCCCCGCCCCCCCGCGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	27	43	-	11.1327	3.57e-05	0.338	GGGTGAGACACGGGTCT
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	80	96	-	11.1327	3.57e-05	0.338	GGGTGAGACACGGGTCT
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	52	69	+	-10.9474	3.57e-05	0.0362	GGAGGGAGGCAGGCTTGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	38	55	-	-10.9474	3.57e-05	0.0362	AAAAGGAAGAAAGGACAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	38	55	-	-10.9474	3.57e-05	0.0362	AAAAGGAAGAAAGGACAG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	46	63	-	-10.9474	3.57e-05	0.0362	GGAGGGAGGCAGGCTTGG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	77	91	-	11.7928	3.57e-05	0.164	GGGGGACAGAGTGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	-	11.7869	3.57e-05	0.0586	CGCCCCCACGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	-	11.7869	3.57e-05	0.0586	CGCCCCCACGGCT
SPDEF	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	14	24	+	11.7091	3.57e-05	0.225	GACCGGATGTC
SPDEF	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	23	-	11.7091	3.57e-05	0.225	ACCCGGAAACG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	34	-	11.7091	3.57e-05	0.225	ACCCGGAAACG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	43	53	+	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	57	67	+	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	57	67	+	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	57	67	+	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	57	67	+	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	72	-	11.7091	3.57e-05	0.225	TCCCGGAAGTT
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	81	91	+	11.7091	3.57e-05	0.225	ACCCGGAAACG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	81	91	+	11.7091	3.57e-05	0.225	ACCCGGAAACG
SPDEF	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	101	-	11.7091	3.57e-05	0.225	GACCGGATGTC
FOS	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	19	29	-	12.6596	3.57e-05	0.211	TCTGACTCACA
IRF9	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	48	62	-	0.181818	3.57e-05	0.506	TCCGGAAATGAAACT
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	21	34	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	21	34	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	21	34	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	21	34	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	27	40	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	21	34	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	21	34	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	21	34	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	21	34	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	27	40	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	75	88	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	81	94	+	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	75	88	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	81	94	-	10.1667	3.57e-05	0.253	TGGCCACGTGGCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	30	39	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	30	39	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	89	98	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	89	98	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	89	98	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	89	98	-	12.5306	3.57e-05	0.0161	TCCACTCCCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	38	51	+	7.56122	3.57e-05	0.0696	GGGGGCGAAGAGGA
RUNX1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	38	48	-	12.1552	3.57e-05	0.224	CGCTGTGGTTC
RUNX1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	67	77	+	12.1552	3.57e-05	0.224	CGCTGTGGTTC
RUNX1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	89	99	+	12.1552	3.57e-05	0.224	CGCTGTGGTTC
DLX6	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	34	41	+	10.5085	3.58e-05	1	GCAATTAC
DLX6	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	74	81	-	10.5085	3.58e-05	1	GCAATTAC
Dlx4	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	34	41	+	10.5398	3.58e-05	1	GCAATTAC
Dlx4	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	74	81	-	10.5398	3.58e-05	1	GCAATTAC
Dlx3	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	34	41	+	10.1712	3.58e-05	1	GCAATTAC
Dlx3	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	74	81	-	10.1712	3.58e-05	1	GCAATTAC
BSX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.566	3.58e-05	1	CCAATTAC
BSX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.566	3.58e-05	1	CCAATTAC
BSX	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.566	3.58e-05	1	CCAATTAC
BSX	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.566	3.58e-05	1	CCAATTAC
BARX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.6981	3.58e-05	1	CCAATTAG
BARX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.6981	3.58e-05	1	CCAATTAG
BARX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.6981	3.58e-05	1	CCAATTAG
MSX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	11.4286	3.58e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	11.4286	3.58e-05	1	CCAATTAC
MSX1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	11.4286	3.58e-05	1	CCAATTAC
MSX1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	11.4286	3.58e-05	1	CCAATTAC
Dux	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	40	47	+	12.541	3.58e-05	0.306	GCAATCAA
Dux	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	45	52	+	12.541	3.58e-05	0.306	GCAATCAA
Dux	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	43	50	-	12.541	3.58e-05	0.306	GCAATCAA
Dux	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	65	72	+	12.541	3.58e-05	0.306	GCAATCAA
Dux	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	63	70	-	12.541	3.58e-05	0.306	GCAATCAA
Dux	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	68	75	-	12.541	3.58e-05	0.306	GCAATCAA
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	7	14	-	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	18	25	-	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	18	25	-	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	18	25	-	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	44	51	-	12.623	3.58e-05	1	GCATATGT
Sox2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	4	11	-	13.6721	3.58e-05	1	CCATTGTT
Sox2	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	12	19	-	13.6721	3.58e-05	1	CCATTGTT
Sox2	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	36	43	+	13.6721	3.58e-05	1	CCATTGTT
Sox2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	78	85	+	13.6721	3.58e-05	1	CCATTGTT
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	96	103	+	13.6721	3.58e-05	1	CCATTGTT
Sox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	96	103	+	13.6721	3.58e-05	1	CCATTGTT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	51	58	+	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	60	67	+	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	98	105	+	12.623	3.58e-05	1	GCATATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	98	105	+	12.623	3.58e-05	1	GCATATGT
E2F6	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	4	14	+	12.5862	3.58e-05	0.0516	CGGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	8	18	+	12.5862	3.58e-05	0.0516	TCGCGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	8	18	+	12.5862	3.58e-05	0.0516	TCGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	8	18	+	12.5862	3.58e-05	0.0516	TCGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	8	18	+	12.5862	3.58e-05	0.0516	TCGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	8	18	+	12.5862	3.58e-05	0.0516	TCGCGGGAGGC
E2F6	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	12	22	-	12.5862	3.58e-05	0.0516	CGGCGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	62	72	+	12.5862	3.58e-05	0.0516	CGGCGGGAGGC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	62	72	+	12.5862	3.58e-05	0.0516	CGGCGGGAGGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	93	103	+	12.5862	3.58e-05	0.0516	CGGCGGGAGGC
ELF5	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	24	34	-	12.0545	3.58e-05	0.128	GCGCGGAAGTA
ELF5	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	47	57	+	12.0545	3.58e-05	0.128	AAGCGGAAGCA
ELF5	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	92	102	-	12.0545	3.58e-05	0.128	ACCAGGAAGCC
KLF13	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	54	71	+	6.7931	3.58e-05	0.213	GGACCGCGCCCCCACGTC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	44	61	-	6.7931	3.58e-05	0.213	GGACCGCGCCCCCACGTC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	44	61	-	6.7931	3.58e-05	0.213	GGACCGCGCCCCCACGTC
Rarb(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	19	35	-	0.272727	3.58e-05	0.785	AGGTCATTTCAGGCTCT
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	80	96	+	0.272727	3.58e-05	0.785	AGGTCATTTCAGGCTCT
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	80	96	+	0.272727	3.58e-05	0.785	AGGTCATTTCAGGCTCT
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	80	96	+	0.272727	3.58e-05	0.785	AGGTCATTTCAGGCTCT
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	80	96	+	0.272727	3.58e-05	0.785	AGGTCATTTCAGGCTCT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	16	30	-	10.8143	3.58e-05	0.108	CGAGATGGAAGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	16	30	-	10.8143	3.58e-05	0.108	CGAGATGGAAGGGCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	38	52	+	10.8143	3.58e-05	0.108	GGGGGGCAGGGTTAA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	38	52	+	10.8143	3.58e-05	0.108	GGGGGGCAGGGTTAA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	38	52	+	10.8143	3.58e-05	0.108	GGGGGGCAGGGTTAA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	38	52	+	10.8143	3.58e-05	0.108	GGGGGGCAGGGTTAA
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	48	62	+	10.8143	3.58e-05	0.108	TGAGGGGAGGGGTGG
ZIC4	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	23	37	+	11.5455	3.58e-05	0.106	CCCCTCCCGCCGCGG
ZIC4	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	32	46	-	11.5455	3.58e-05	0.106	GGCCGCACGCCGTGC
ZIC4	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	69	83	+	11.5455	3.58e-05	0.106	GGCCGCACGCCGTGC
ZIC4	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	78	92	-	11.5455	3.58e-05	0.106	CCCCTCCCGCCGCGG
NFATC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	7	16	+	10.8618	3.58e-05	0.956	TTTTTCCACC
NFATC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	7	16	+	10.8618	3.58e-05	0.956	TTTTTCCACC
NFATC1	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	99	108	-	10.8618	3.58e-05	0.956	TTTTTCCACC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	+	11.6721	3.58e-05	0.0641	CGCCCCAGAGGCC
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	+	10.5273	3.58e-05	0.169	TGTTACGTCACG
HNF1A	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	18	32	+	11.5195	3.58e-05	0.71	TCTTAATGTTTAACC
PRDM1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	73	87	+	11.6	3.58e-05	0.308	GGAAATTGAAACTGA
ZIC1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	48	61	+	8.23404	3.58e-05	0.0959	GGCACCCCGGGGGG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	53	66	+	8.23404	3.58e-05	0.0959	TAAATCCCGCTGTG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	42	55	-	8.23404	3.58e-05	0.0959	TAAATCCCGCTGTG
ZIC1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	54	67	-	8.23404	3.58e-05	0.0959	GGCACCCCGGGGGG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	98	111	+	8.23404	3.58e-05	0.0959	GGCCGCCTGCGGAT
E2F4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	17	27	+	12.3966	3.58e-05	0.0451	GAGCGGGAGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	35	45	-	12.3966	3.58e-05	0.0451	GAGCGGGAGCG
SPIC	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	91	104	+	11.9014	3.58e-05	0.214	TTAATCGGGAAGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	49	63	+	11.7241	3.58e-05	0.00981	TGCCCTCCTCCTTCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	67	81	+	11.7241	3.58e-05	0.00981	GGACCGCCCACTTCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	19	38	+	5.76147	3.58e-05	0.0514	GACCACCCCCCCCCCCCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	62	81	+	5.76147	3.58e-05	0.0514	CCCTCACCCGCCCCCTTCGA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	62	81	+	5.76147	3.58e-05	0.0514	CCCTCACCCGCCCCCTTCGA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	62	81	+	5.76147	3.58e-05	0.0514	CCCTCACCCGCCCCCTTCGA
PBX1	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	75	86	+	12.1531	3.58e-05	1	TCATCAATCTAG
TFEB	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	-	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	39	-	12.3846	3.58e-05	0.131	ATCACGTGAG
TFEB	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	+	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	-	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	85	+	12.3846	3.58e-05	0.131	ATCACGTGAG
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	-	12.3846	3.58e-05	0.131	GTCACATGAT
TFEB	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	-	12.3846	3.58e-05	0.131	GTCACATGAT
SP4	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	61	77	+	6.09091	3.58e-05	0.022	CGTGCCCCGCCTCTCTC
SP4	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	38	54	-	6.09091	3.58e-05	0.022	CGTGCCCCGCCTCTCTC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	86	100	+	12.2889	3.58e-05	0.86	CACGGTCAGCAGACT
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	109	-	12.2022	3.58e-05	1	AGGACAGCTGTT
ETV4	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	12.3103	3.58e-05	0.101	ACCGGAAACG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	12.3103	3.58e-05	0.101	ACCGGAACTA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	12.3103	3.58e-05	0.101	ACCGGAACTA
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	22	32	-	12.6727	3.59e-05	0.155	CTGTGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	44	54	+	12.6727	3.59e-05	0.155	CTGTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	44	54	+	12.6727	3.59e-05	0.155	CTGTGACTCAT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	2	15	+	11.5769	3.59e-05	0.0171	CCCTCGCTCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	2	15	+	11.5769	3.59e-05	0.0171	CCCTCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	6	19	+	11.5769	3.59e-05	0.0171	CGCCCGCCGCCGGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	6	19	+	11.5769	3.59e-05	0.0171	CGCCCGCCGCCGGT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	18	31	+	11.5769	3.59e-05	0.0171	CCCTCGCTCCCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	49	62	-	11.5769	3.59e-05	0.0171	CCGCCGCCTTCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	96	109	+	11.5769	3.59e-05	0.0171	CCACCTCCCCTGCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	96	109	+	11.5769	3.59e-05	0.0171	CCACCTCCCCTGCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	21	31	-	12.2308	3.59e-05	0.0112	TCCCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	31	41	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	33	43	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	43	53	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	43	53	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	38	48	-	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	52	62	+	12.2308	3.59e-05	0.0112	TTCCCACCCCT
SP1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	46	56	-	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	59	69	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	67	77	+	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	67	77	-	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	74	84	-	12.2308	3.59e-05	0.0112	CCTCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	88	98	-	12.2308	3.59e-05	0.0112	TCCCCACCTCT
JUN	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	17	29	+	12	3.59e-05	0.301	GCGCTGAGGTCAT
JUN	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	17	29	+	12	3.59e-05	0.301	GCCGTGAGGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	17	29	+	12	3.59e-05	0.301	GCCGTGAGGTCAT
JUN	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	53	65	+	12	3.59e-05	0.301	GCGCTGAGGTCAT
JUN	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	86	98	-	12	3.59e-05	0.301	GCCGTGAGGTCAT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	42	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	42	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	42	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	42	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	42	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	92	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	92	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	92	-	5.25455	3.59e-05	0.152	TAGAAGCGGAAGCG
SP8	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	23	34	-	11.9079	3.59e-05	0.0255	CCCACCCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	66	77	+	11.9079	3.59e-05	0.0255	GCCCTGCCCACT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	66	77	+	11.9079	3.59e-05	0.0255	GCCCTGCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	101	112	-	11.9079	3.59e-05	0.0255	CCCACCCCCAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	101	112	-	11.9079	3.59e-05	0.0255	CCCACCCCCAGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	71	88	-	-10.9605	3.59e-05	0.0362	TGGAGAGATGAAGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	71	88	-	-10.9605	3.59e-05	0.0362	TGGAGAGATGAAGGCAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	71	88	-	-10.9605	3.59e-05	0.0362	TGGAGAGATGAAGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	71	88	-	-10.9605	3.59e-05	0.0362	TGGAGAGATGAAGGCAGC
Rarg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	38	53	+	0.510204	3.59e-05	0.877	GAGGGCAGGAGGTCCA
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	38	53	+	0.510204	3.59e-05	0.877	GAGGGCAGGAGGTCCA
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	30	45	-	0.510204	3.59e-05	0.877	GAGGGCAGGAGGTCCA
Rarg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	30	45	-	0.510204	3.59e-05	0.877	GAGGGCAGGAGGTCCA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	79	95	-	11.1224	3.59e-05	0.338	AGGGCAGCCGGCGCTCA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	21	+	11.4182	3.59e-05	0.0374	CCCCCCCCCCCCACCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	10	25	-	11.4182	3.59e-05	0.0374	GCCCGCCCGCGCCGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	10	25	-	11.4182	3.59e-05	0.0374	GCCCGCCCGCGCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	18	33	-	11.4182	3.59e-05	0.0374	CCCCTCCCGCGCCTTG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	38	53	-	11.4182	3.59e-05	0.0374	CCCCTCCCCCGCCAGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	38	53	-	11.4182	3.59e-05	0.0374	CCCCTCCCCCGCCAGC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	56	71	+	11.4182	3.59e-05	0.0374	GCCCGCCCGCGCCGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	56	71	+	11.4182	3.59e-05	0.0374	GCCCGCCCGCGCCGCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	68	83	+	11.4182	3.59e-05	0.0374	CCCCTCCCCCGCCAGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	68	83	+	11.4182	3.59e-05	0.0374	CCCCTCCCCCGCCAGC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	82	97	+	11.4182	3.59e-05	0.0374	CCCCTCCCGCGCCTTG
NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	-	7.87755	3.59e-05	0.248	GATGACTCAGC
NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	-	7.87755	3.59e-05	0.248	GATGACTCAGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	4	14	-	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	26	-	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	23	33	-	12.2295	3.59e-05	0.0489	CCGGAAACGGT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	48	58	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	48	58	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	48	58	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	89	99	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	101	111	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	101	111	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	101	111	+	12.2295	3.59e-05	0.0489	CCGGAAGGGCT
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	15	28	+	5.12195	3.59e-05	0.407	GAGGTCAGAGGGCC
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	15	28	+	5.12195	3.59e-05	0.407	GAGGTCAGAGGGCC
REST	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	61	81	+	6.83673	3.59e-05	0.208	TTCAGCAAAGTGCACAGCTGC
REST	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	61	81	+	6.83673	3.59e-05	0.208	TTCAGCAAAGTGCACAGCTGC
REST	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	61	81	+	6.83673	3.59e-05	0.208	TTCAGCAAAGTGCACAGCTGC
TCF7L2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	45	58	+	12.2364	3.59e-05	1	GGGCATCAAAGTCA
Crem	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	60	69	+	12.7541	3.59e-05	0.263	AATGACGTAC
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	27	36	-	12.7541	3.59e-05	0.263	AATGACGTAC
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	27	36	-	12.7541	3.59e-05	0.263	AATGACGTAC
Crem	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	50	59	-	12.7541	3.59e-05	0.263	AATGACGTAG
Crem	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	60	69	-	12.7541	3.59e-05	0.263	AATGACGTAC
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	70	85	-	6.19672	3.59e-05	0.833	GAGTGCATATGGTTCC
Mitf	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	103	112	-	11.5102	3.59e-05	0.211	GGTCACGCGT
JUND(var.2)	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	34	48	+	12.1064	3.59e-05	0.311	CTTGGTGACGTCAGA
JUND(var.2)	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	81	-	12.1064	3.59e-05	0.311	CTTGGTGACGTCAGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	+	11.5172	3.59e-05	0.0554	GGCCCGCGAGGGA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	+	11.5172	3.59e-05	0.0554	AGCCTCCCAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	-	11.5172	3.59e-05	0.0554	CGCCCCCCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	-	11.5172	3.59e-05	0.0554	CGCCCCCCAGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	+	11.5172	3.59e-05	0.0554	CGCCCCCCAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	-	11.5172	3.59e-05	0.0554	AGCCTCCCAGGCA
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	-	11.5172	3.59e-05	0.0554	AGCCTCCCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	-	11.5172	3.59e-05	0.0554	TGCCGGGCGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	-	11.5172	3.59e-05	0.0554	TGCCGGGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	-	11.5172	3.59e-05	0.0554	TGCCGGGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	-	11.5172	3.59e-05	0.0554	TGCCGGGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	-	11.5172	3.59e-05	0.0554	TGCCGGGCGGGCT
MEF2C	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	26	40	+	11.9831	3.59e-05	0.78	GCTACAGAAATAGCA
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	56	70	-	11.9831	3.59e-05	0.78	GCTACAGAAATAGCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	56	70	-	11.9831	3.59e-05	0.78	GCTACAGAAATAGCA
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	36	49	+	9.81967	3.59e-05	0.177	CCCCCCCCGCGCGC
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr17:10452902..10453016,-__1036.1.0.0	32	46	-	9.14474	3.59e-05	0.224	AGGACGAGTCAGCCT
NRF1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	2	12	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	13	23	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	19	29	+	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	19	29	+	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	39	49	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	40	50	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	40	50	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	55	65	+	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	60	70	+	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	60	70	+	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	1	11	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	23	33	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	23	33	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	23	33	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	48	58	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	48	58	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	48	58	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	48	58	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	50	60	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	50	60	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	53	63	-	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	53	63	-	11.5455	3.59e-05	0.0148	GCGGGTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	66	76	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	66	76	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	75	85	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	87	97	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	87	97	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	92	102	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	103	113	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	103	113	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	103	113	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	103	113	-	11.5455	3.59e-05	0.0148	GCGCCCGCCCC
HSF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	62	74	+	11.8537	3.59e-05	1	TACCGGAAGTTTC
HSF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	62	74	+	11.8537	3.59e-05	1	TACCGGAAGTTTC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	6	16	+	11.7069	3.59e-05	0.0149	GCCACCCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	27	37	+	11.7069	3.59e-05	0.0149	GCCACCCCTCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	32	42	+	11.7069	3.59e-05	0.0149	GCCACCCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	74	84	-	11.7069	3.59e-05	0.0149	ACACCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	74	84	-	11.7069	3.59e-05	0.0149	ACACCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	99	109	-	11.7069	3.59e-05	0.0149	GCCACCCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	99	109	-	11.7069	3.59e-05	0.0149	GCCACCCCTCC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	+	12.4182	3.59e-05	0.168	ACTGAGTCAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	-	12.4182	3.59e-05	0.168	ACTGAGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	-	12.4182	3.59e-05	0.168	ACTGAGTCAGC
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	13	22	+	11.7273	3.6e-05	0.165	GTAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	13	22	+	11.7273	3.6e-05	0.165	GTAGGGGAAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	67	76	-	11.7273	3.6e-05	0.165	GTAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	84	93	-	11.7273	3.6e-05	0.165	GTAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	84	93	-	11.7273	3.6e-05	0.165	GTAGGGGAAG
Myog	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	78	88	-	12.9388	3.6e-05	0.136	GACAGCTGTAC
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.0	19	35	+	3.23636	3.6e-05	0.463	CGTCCCGGCTGGAAGCC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.0.0	19	35	+	3.23636	3.6e-05	0.463	CGTCCCGGCTGGAAGCC
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.1	19	35	+	3.23636	3.6e-05	0.463	CGTCCCGGCTGGAAGCC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	59	75	+	3.23636	3.6e-05	0.463	CGTCCCGGCTGGAAGCC
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	59	75	+	3.23636	3.6e-05	0.463	CGTCCCGGCTGGAAGCC
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	+	7.31915	3.6e-05	0.952	TGTGACATGCTGTACCC
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	+	7.31915	3.6e-05	0.952	TGTGACATGCTGTACCC
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	-	7.31915	3.6e-05	0.952	TGTGACATGCTGTACCC
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	-	7.31915	3.6e-05	0.952	TGTGACATGCTGTACCC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	61	79	+	11.6452	3.6e-05	0.145	AGGCGCAGTGGTGCTGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	61	79	+	11.6452	3.6e-05	0.145	AGGCGCAGTGGTGCTGGGC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	5	14	+	10.1129	3.6e-05	0.0452	GTCACGCGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	5	14	-	10.1129	3.6e-05	0.0452	AGCGCGTGAC
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	47	56	+	10.1129	3.6e-05	0.0452	AGCGCGTGAC
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	47	56	-	10.1129	3.6e-05	0.0452	GTCACGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	59	68	+	10.1129	3.6e-05	0.0452	GTCACGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	59	68	-	10.1129	3.6e-05	0.0452	AGCGCGTGAC
MTF1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	33	46	+	8.06098	3.6e-05	0.5	TCTGCGCGCGTCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	69	82	-	8.06098	3.6e-05	0.5	TCTGCGCGCGTCCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	69	82	-	8.06098	3.6e-05	0.5	TCTGCGCGCGTCCC
CENPB	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	13	27	-	11.6346	3.6e-05	0.822	CCCGCCTGCCACGGA
CENPB	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	20	34	+	11.6346	3.6e-05	0.822	CCCGCCTGCCACGGA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	12	26	+	8.36207	3.6e-05	0.0347	TTCCGCTCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	12	26	+	8.36207	3.6e-05	0.0347	TTCCGCTCCCGCCCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	89	103	-	8.36207	3.6e-05	0.0347	TTCCGCTCCCGCCCC
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	65	85	-	10.8571	3.6e-05	0.0138	AAAGCTGGGGCGGGGAAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	30	50	+	10.8571	3.6e-05	0.0138	AAAGCTGGGGCGGGGAAGGGG
IRF7	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	55	68	+	10.2419	3.6e-05	0.664	CTGAAAGCGAAGAT
IRF7	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	63	76	-	10.2419	3.6e-05	0.664	ATAAAAATGAAAGT
TBX2	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	54	64	-	11.9273	3.6e-05	1	GAGGTGTTAGA
ELK1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.5745	3.6e-05	0.0794	AACGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.5745	3.6e-05	0.0794	AACGGAAGTA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.5745	3.6e-05	0.0794	AACGGAAGTA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	5	24	-	5.74312	3.6e-05	0.0515	CACACCCCCAACCCACTTCC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	55	66	-	11.9091	3.6e-05	0.109	CCGCGTCCCCTT
REST	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	2	22	-	6.82653	3.6e-05	0.208	TCCAGAACCAAGGGGGGCTCG
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	39	59	-	6.82653	3.6e-05	0.208	TGCCGCAGTGCGGACAGCGCG
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	39	59	-	6.82653	3.6e-05	0.208	TGCCGCAGTGCGGACAGCGCG
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	39	59	-	6.82653	3.6e-05	0.208	TGCCGCAGTGCGGACAGCGCG
REST	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	56	76	+	6.82653	3.6e-05	0.208	TGCCGCAGTGCGGACAGCGCG
Hic1	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	2	10	+	12.1923	3.6e-05	0.516	ATGCCCACC
Hic1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	21	29	-	12.1923	3.6e-05	0.516	ATGCCCACC
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	17	30	+	7.53061	3.6e-05	0.0696	GGGGGCTGGGGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	85	98	-	7.53061	3.6e-05	0.0696	GGGGGCTGGGGGGA
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	45	63	-	11.6935	3.6e-05	0.671	TGTACCCAGGAGACCTCAG
POU4F1	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	30	43	+	11.8504	3.6e-05	1	GTTAATAATTAACT
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	3	14	-	11.9032	3.61e-05	1	AAATGTAAATGA
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	3	14	-	11.9032	3.61e-05	1	AAATGTAAATGA
YY1	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	94	105	+	11.9615	3.61e-05	0.199	AAAGATGGAGCC
E2F6	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	14	24	+	12.569	3.61e-05	0.052	GGGCGGGAGTT
Hmx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	73	89	-	11.9512	3.61e-05	1	GCGAGCAATTGAGGAAG
ETS1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	12.3276	3.61e-05	0.0894	AGCGGAAATG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	12.3276	3.61e-05	0.0894	AGCGGAAATG
MYBL1	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	19	30	-	11.3966	3.61e-05	1	ACCGTCAACCGC
PKNOX1	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	46	57	-	4.85714	3.61e-05	1	TGACATGTACCA
STAT1	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	52	62	-	11.8182	3.61e-05	0.283	GTTACGGGAAT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	-	12.2885	3.61e-05	0.0703	GGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	-	12.2885	3.61e-05	0.0703	GGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	-	12.2885	3.61e-05	0.0703	GGCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	-	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	+	12.2885	3.61e-05	0.0703	AGCCCCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	+	12.2885	3.61e-05	0.0703	AGCCCCCGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	+	12.2885	3.61e-05	0.0703	CGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	+	12.2885	3.61e-05	0.0703	AGCCCCCGGCG
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	37	48	+	12.0323	3.61e-05	0.281	ACGCCCCCCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.1.0	74	85	-	12.0323	3.61e-05	0.281	GCGAACACCGAG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	74	85	-	12.0323	3.61e-05	0.281	GCGAACACCGAG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	64	74	+	12.2727	3.61e-05	0.0682	TCCCCCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	64	74	+	12.2727	3.61e-05	0.0682	TCCCCCAGGCT
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	20	33	-	7.52041	3.61e-05	0.0696	GGGGCCTCCTGGGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	65	78	+	7.52041	3.61e-05	0.0696	GGGGCCTCCTGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	82	95	+	7.52041	3.61e-05	0.0696	GGGGCCTCCTGGGA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	+	12.1818	3.61e-05	0.0548	TGCCGGCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	+	12.1818	3.61e-05	0.0548	TGCCGGCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	+	12.1818	3.61e-05	0.0548	TGCCGGCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	+	12.1818	3.61e-05	0.0548	TGCCGGCAGGCA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	79	90	+	12.1818	3.61e-05	0.0548	CACCCTCGGGCT
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	12.4182	3.61e-05	0.125	CGCACGTGCT
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	12.4182	3.61e-05	0.125	CGCACGTGCT
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	12.4182	3.61e-05	0.125	CGCACGTGCT
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	12.4182	3.61e-05	0.125	CGCACGTGCT
SP2	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	17	31	+	11.7069	3.61e-05	0.00989	CTCCCTCCTCCCTAG
SP2	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	61	75	-	11.7069	3.61e-05	0.00989	CCTCCTCCTCCTCAC
SP2	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	84	98	-	11.7069	3.61e-05	0.00989	CTCCCTCCTCCCTAG
EBF1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	70	83	+	10.6885	3.61e-05	0.365	AGTCCCCAGGGCAG
KLF13	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	34	51	+	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	87	104	+	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	11	28	-	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	11	28	-	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	11	28	-	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	11	28	-	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
KLF13	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	64	81	-	6.75862	3.61e-05	0.213	TGACTACGCCCCCACACT
GLIS2	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	20	33	+	9.80328	3.61e-05	0.177	ACCCCCCCGCCAAC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	100	113	-	9.80328	3.61e-05	0.177	GACCCCCAGCCCAG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	52	66	-	11.5818	3.61e-05	0.308	GAAAAGGGAGAGAGA
Myod1	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	14	26	+	12.898	3.61e-05	0.143	CTCAGCTGTTGCA
Myod1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	45	+	12.898	3.61e-05	0.143	GACAGCTGTGGCC
Myod1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	72	84	+	12.898	3.61e-05	0.143	TGCAGCTGTGAGT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	70	82	-	12.898	3.61e-05	0.143	GACAGCTGTGGCC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	70	82	-	12.898	3.61e-05	0.143	GACAGCTGTGGCC
Myod1	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	89	101	-	12.898	3.61e-05	0.143	CTCAGCTGTTGCA
ELK4	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	27	37	-	12.3455	3.62e-05	0.0528	CCACTTCCTCC
ELK4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	52	-	12.3455	3.62e-05	0.0528	GGACTTCCGCT
ELK4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	64	-	12.3455	3.62e-05	0.0528	GGACTTCCGCT
ELK4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	51	61	+	12.3455	3.62e-05	0.0528	GGACTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	63	73	+	12.3455	3.62e-05	0.0528	GGACTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	63	73	+	12.3455	3.62e-05	0.0528	GGACTTCCGCT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	77	87	+	12.3455	3.62e-05	0.0528	CCACTTCCTCC
ELK4	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	78	88	+	12.3455	3.62e-05	0.0528	CCACTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	78	88	+	12.3455	3.62e-05	0.0528	CCACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	78	88	+	12.3455	3.62e-05	0.0528	CCACTTCCTCC
CEBPB	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	+	12.16	3.62e-05	0.744	ATTGTGCAAC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	+	11.5	3.62e-05	0.0554	GGCCGCGAGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	+	11.5	3.62e-05	0.0554	GGCCGCGAGGGCG
REST	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	95	-	6.81633	3.62e-05	0.208	CCCAGGACCAGGGGGCGGAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	33	+	11.8947	3.62e-05	0.0256	CACCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	33	+	11.8947	3.62e-05	0.0256	CACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	11	22	-	11.8947	3.62e-05	0.0256	CACCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	11	22	-	11.8947	3.62e-05	0.0256	CACCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	26	37	+	11.8947	3.62e-05	0.0256	TCCCCCCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	27	38	+	11.8947	3.62e-05	0.0256	CACCCCCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	61	+	11.8947	3.62e-05	0.0256	GCTCCGCCCACA
SP8	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	54	65	-	11.8947	3.62e-05	0.0256	GCTCCGCCCACA
RFX3	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	+	10.6212	3.62e-05	0.222	GGTTACCATGGTCGCG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	89	104	-	10.6212	3.62e-05	0.222	CATTGTCACGGTAACC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	33	47	+	9.71429	3.62e-05	0.101	CACCCCCTGCCTGGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	33	47	+	9.71429	3.62e-05	0.101	CACCCCCTGCCTGGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	22	36	-	9.71429	3.62e-05	0.101	CCCCCCCCGCCGGCC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	22	36	-	9.71429	3.62e-05	0.101	CCCCCCCCGCCGGCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	22	36	-	9.71429	3.62e-05	0.101	CCCCCCCCGCCGGCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	22	36	-	9.71429	3.62e-05	0.101	CCCCCCCCGCCGGCC
POU4F2	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	5	20	-	8.83636	3.62e-05	1	AGGCATTTTAAATGAT
EGR3	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	10	24	+	8.34483	3.62e-05	0.0347	GCACGCCGACGCGGC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	26	40	+	8.34483	3.62e-05	0.0347	CCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	40	54	+	8.34483	3.62e-05	0.0347	CCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	39	53	-	8.34483	3.62e-05	0.0347	CCCCGCCCCCCCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	91	105	-	8.34483	3.62e-05	0.0347	GCACGCCGACGCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	91	105	-	8.34483	3.62e-05	0.0347	GCACGCCGACGCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	91	105	-	8.34483	3.62e-05	0.0347	GCACGCCGACGCGGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	91	105	-	8.34483	3.62e-05	0.0347	GCACGCCGACGCGGC
IRF8	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	21	34	+	0.618182	3.62e-05	0.686	ACGTAAGTGAAACT
IRF8	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	81	94	-	0.618182	3.62e-05	0.686	ACGTAAGTGAAACT
Klf12	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	12	26	+	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	26	40	-	9.96721	3.62e-05	0.0507	GGCTACGCCCAGAGA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	57	71	-	9.96721	3.62e-05	0.0507	TGCCCCACCCTTTGT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	89	103	-	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	89	103	-	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	89	103	-	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	89	103	-	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	89	103	-	9.96721	3.62e-05	0.0507	CACCACGCTCTCCTT
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	83	+	12.4898	3.62e-05	0.108	GTCACGTGCCT
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	83	+	12.4898	3.62e-05	0.108	GTCACGTGCCT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	51	67	+	6.05455	3.62e-05	0.0222	CAAGCTCCTCCCACGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	51	67	+	6.05455	3.62e-05	0.0222	CAAGCTCCTCCCACGGC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	51	67	+	6.05455	3.62e-05	0.0222	CAAGCTCCTCCCACGGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	51	67	+	6.05455	3.62e-05	0.0222	CAAGCTCCTCCCACGGC
E2F4	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	9	19	-	12.3793	3.62e-05	0.0451	GCGCGCGAAAA
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	19	29	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	22	32	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	12	22	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	23	33	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	28	38	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	37	47	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	37	47	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	30	40	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	30	40	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	30	40	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	30	40	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	30	40	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	32	42	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	32	42	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	46	56	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	48	58	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	63	73	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	63	73	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	68	78	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	68	78	+	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	76	86	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	77	87	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	82	92	-	12.3793	3.62e-05	0.0451	GGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	96	106	+	12.3793	3.62e-05	0.0451	GCGCGCGAAAA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	96	106	+	12.3793	3.62e-05	0.0451	GCGCGCGAAAA
TCF7L2	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	27	40	+	12.2182	3.62e-05	1	CAAGATCAAAACGA
TCF7L2	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	92	105	+	12.2182	3.62e-05	1	CAAGATCAAAACGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	91	108	+	-10.9868	3.62e-05	0.0364	CGAAGCCGGGAAGGTAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	7	24	-	-10.9868	3.62e-05	0.0364	CGAAGCCGGGAAGGTAGG
HOXA13	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	47	56	+	12.1389	3.62e-05	1	GCAATAAAAT
EGR1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	9	22	+	11.5577	3.62e-05	0.0172	CAACCGCCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	16	29	-	11.5577	3.62e-05	0.0172	GCCCCGCCCTCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	16	29	-	11.5577	3.62e-05	0.0172	GCCCCGCCCTCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	16	29	-	11.5577	3.62e-05	0.0172	GCCCCGCCCTCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	16	29	-	11.5577	3.62e-05	0.0172	GCCCCGCCCTCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	16	29	-	11.5577	3.62e-05	0.0172	GCCCCGCCCTCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	40	53	+	11.5577	3.62e-05	0.0172	TTCCCACCCACTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	40	53	+	11.5577	3.62e-05	0.0172	TTCCCACCCACTTC
EGR1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	93	106	-	11.5577	3.62e-05	0.0172	CAACCGCCGCCGCT
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	11.7308	3.62e-05	1	AGCATATGCC
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	11.7308	3.62e-05	1	AGCATATGCC
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	57	68	+	10.6721	3.62e-05	0.0972	AGACCGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	57	68	+	10.6721	3.62e-05	0.0972	AGACCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	57	68	+	10.6721	3.62e-05	0.0972	AGACCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	57	68	+	10.6721	3.62e-05	0.0972	AGACCGGAAGTC
ELF4	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	58	-	10.6721	3.62e-05	0.0972	AGACCGGAAGTC
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	60	70	+	12.5273	3.62e-05	0.721	CAGCACTCAGG
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	56	66	-	12.5273	3.62e-05	0.721	AACCTCTCCAG
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	77	87	-	12.5273	3.62e-05	0.721	CAGCACTCAGG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	+	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	-	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	-	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	-	12.0714	3.62e-05	0.0857	CGCCCCGGGCCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	-	12.0714	3.62e-05	0.0857	CGCCCCGGGCCG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	35	-	12.0714	3.62e-05	0.0857	TCCCCTGGGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	+	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	+	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	+	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	+	12.0714	3.62e-05	0.0857	CGCCCCCGGGGT
TFAP2C	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	+	12.0714	3.62e-05	0.0857	CGCCCCGGGCCG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	11	21	+	12.6364	3.62e-05	0.155	CCATGAGTCAG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	51	61	-	12.6364	3.62e-05	0.155	CCATGAGTCAG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	92	111	-	5.72477	3.62e-05	0.0515	CCCCCACCCACTACGCGACG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	92	111	-	5.72477	3.62e-05	0.0515	CCCCCACCCACTACGCGACG
RREB1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	4	23	+	5.72477	3.62e-05	0.0515	CCCCCACCCACTACGCGACG
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	12.4545	3.62e-05	0.585	ACCACGTGCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	3	12	-	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	21	30	-	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	36	45	+	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	41	50	+	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	48	57	+	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	48	57	+	12.4694	3.62e-05	0.0162	CCCACTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	85	94	+	12.4694	3.62e-05	0.0162	CCCACTCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	24	34	+	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	24	34	+	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	36	46	+	12.0909	3.62e-05	0.0465	GTCCCCACCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	65	75	+	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	83	93	+	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	94	104	+	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	11	21	-	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	22	32	-	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	26	36	-	12.0909	3.62e-05	0.0465	CACCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	69	79	-	12.0909	3.62e-05	0.0465	GTCCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	69	79	-	12.0909	3.62e-05	0.0465	GTCCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	69	79	-	12.0909	3.62e-05	0.0465	GTCCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	69	79	-	12.0909	3.62e-05	0.0465	GTCCCCACCCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	76	90	+	11.1061	3.62e-05	0.263	CGGTGTGACTTAGGA
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	76	90	+	11.1061	3.62e-05	0.263	CGGTGTGACTTAGGA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	10	30	+	10.4677	3.63e-05	0.162	ACACGCTTTCAGTTCCTAGTG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	82	102	-	10.4677	3.63e-05	0.162	ACACGCTTTCAGTTCCTAGTG
EHF	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	27	-	11.5738	3.63e-05	0.118	AAACCGGAAGCT
EGR4	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	36	51	+	11.4	3.63e-05	0.0374	GCCCGCCCACGTCCGG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	37	52	+	11.4	3.63e-05	0.0374	CCCCGCCCCCACCATG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	37	52	+	11.4	3.63e-05	0.0374	CCCCGCCCCCACCATG
EGR4	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	45	60	+	11.4	3.63e-05	0.0374	CTCCCCCCACCCCACC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	34	49	-	11.4	3.63e-05	0.0374	CCCCGCCCAGGCGTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	34	49	-	11.4	3.63e-05	0.0374	CCCCGCCCAGGCGTGA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	34	49	-	11.4	3.63e-05	0.0374	CCCCGCCCAGGCGTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	34	49	-	11.4	3.63e-05	0.0374	CCCCGCCCAGGCGTGA
EGR4	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	40	55	-	11.4	3.63e-05	0.0374	GCCCGCCCACGTCCGG
EGR4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	57	72	+	11.4	3.63e-05	0.0374	ACCCGCCCCCACAAGC
EGR4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	43	58	-	11.4	3.63e-05	0.0374	ACCCGCCCCCACAAGC
EGR4	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	60	75	+	11.4	3.63e-05	0.0374	GCCCGCCCACGTCCGG
EGR4	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	64	79	-	11.4	3.63e-05	0.0374	GCCCGCCCACGTCCGG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	29	43	+	11.5345	3.63e-05	0.377	GAGTTTAAGGTCATC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	29	43	+	11.5345	3.63e-05	0.377	GAGTTTAAGGTCATC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	49	63	+	11.5345	3.63e-05	0.377	GAGTTTAAGGTCATC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	49	63	+	11.5345	3.63e-05	0.377	GAGTTTAAGGTCATC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	12.3273	3.63e-05	0.102	ACAGGAAGTC
ERG	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	12.3273	3.63e-05	0.102	ACAGGAAGTC
PAX9	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	27	43	-	3.2	3.63e-05	0.463	CGCCCCGCCCGGCTGCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	24	37	-	10.3793	3.63e-05	0.0285	CGCCACCCCCATCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	24	37	-	10.3793	3.63e-05	0.0285	CGCCACCCCCATCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	24	37	-	10.3793	3.63e-05	0.0285	CGCCACCCCCATCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	24	37	-	10.3793	3.63e-05	0.0285	CGCCACCCCCATCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	64	77	+	10.3793	3.63e-05	0.0285	AGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	64	77	+	10.3793	3.63e-05	0.0285	AGCCCCGCCCCGTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	64	77	+	10.3793	3.63e-05	0.0285	AGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	64	77	+	10.3793	3.63e-05	0.0285	AGCCCCGCCCCGTC
Myc	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	102	111	+	13.0364	3.63e-05	0.364	CCATGTGCCG
Myc	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	4	13	-	13.0364	3.63e-05	0.364	CCATGTGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	17	28	+	5.51724	3.63e-05	0.189	CGCCACGTGACT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	49	60	+	5.51724	3.63e-05	0.189	CGCCACGTGACT
IRF9	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	78	92	+	0.109091	3.63e-05	0.506	ACAGAAAGCAAAAGT
MNT	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	12.6364	3.63e-05	0.247	GGCACGTGAC
MNT	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	+	12.6364	3.63e-05	0.247	ACCACGTGAA
MNT	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	12.6364	3.63e-05	0.247	GGCACGTGAC
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	11	20	+	12.2069	3.63e-05	0.859	AACAGCTGGT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.3793	3.63e-05	0.241	CACACGTGAT
ATF7	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	39	52	-	9.17143	3.63e-05	0.151	AAATGACGTTATCC
SP8	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	22	33	+	11.8816	3.63e-05	0.0256	ACCACCCCTCCC
SP8	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	82	93	-	11.8816	3.63e-05	0.0256	ACCACCCCTCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	35	45	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	35	45	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	47	57	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	62	72	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	69	79	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:91208884..91208998,-__2162.1.0.0	84	94	+	11.5273	3.63e-05	0.0148	CCCCCTGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	101	111	+	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	4	14	-	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	8	18	-	11.5273	3.63e-05	0.0148	CCCCCTGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	14	24	-	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	43	53	-	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	58	68	-	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	66	76	-	11.5273	3.63e-05	0.0148	GCGCGCGCCCG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	13	28	+	3.98276	3.63e-05	0.299	CTACCACAATTCCCAG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	49	64	+	3.98276	3.63e-05	0.299	CTACCACAATTCCCAG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	35	-	12.1455	3.63e-05	0.0893	TCCCCTGGGGCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	35	54	+	5.7156	3.63e-05	0.0515	CCCCTCCTCACGCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	35	54	+	5.7156	3.63e-05	0.0515	CCCCTCCTCACGCCCCGCCC
MAFG	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	40	60	+	10.9898	3.63e-05	0.929	CCTGCGCTGCCTCAGCGTCCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	39	52	-	8.19149	3.63e-05	0.0959	GCCCCCGCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	39	52	-	8.19149	3.63e-05	0.0959	GCCCCCGCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	81	94	+	8.19149	3.63e-05	0.0959	GACGCCCTGCGGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	81	94	+	8.19149	3.63e-05	0.0959	GACGCCCTGCGGCC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	19	28	-	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	19	28	-	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	44	53	+	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	44	53	+	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	57	66	+	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	57	66	+	12.2073	3.63e-05	0.14	ACCACATGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	62	71	+	12.2073	3.63e-05	0.14	ACCACATGAC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	62	77	+	-6.03846	3.63e-05	0.329	ACACCCTCCGCGAACC
E2F2	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	43	58	-	3.46341	3.64e-05	1	AAAATGGCGCCGAAAG
E2F2	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	72	87	-	3.46341	3.64e-05	1	AAAATGGCGCCGAAAG
E2F2	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	28	43	+	3.46341	3.64e-05	1	AAAATGGCGCCGAAAG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	17	27	+	12.3818	3.64e-05	0.0515	ACCCCCAGGCC
Zfx	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	12	25	+	12.1061	3.64e-05	0.0471	GGGGGCGGAGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	90	103	-	12.1061	3.64e-05	0.0471	GGGGGCGGAGCCTG
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	29	39	-	12.3818	3.64e-05	0.168	CGTGACTCAGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	30	40	-	12.3818	3.64e-05	0.168	CGTGACTCAGG
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	49	59	-	12.3818	3.64e-05	0.168	CGTGACTCAGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	100	110	+	12.3818	3.64e-05	0.168	CGTGACTCAGG
NFYA	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	4	21	+	10.6463	3.64e-05	0.127	TGGCCTATGATTGGCTGT
NFYA	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	27	44	+	10.6463	3.64e-05	0.127	AGGTGTCTGATTGGAGAA
NFYA	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	71	88	-	10.6463	3.64e-05	0.127	AGGTGTCTGATTGGAGAA
Pparg::Rxra	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	46	60	+	11.7658	3.64e-05	0.164	AAGGAGCAAAGGGGA
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	55	69	-	11.7658	3.64e-05	0.164	AAGGAGCAAAGGGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	19	36	+	-11	3.64e-05	0.0364	GAGGGGGCGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	19	36	+	-11	3.64e-05	0.0364	GAGGGGGCGGGAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	43	60	-	-11	3.64e-05	0.0364	GGAAGTGGAGAAGCGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	43	60	-	-11	3.64e-05	0.0364	GGAAGTGGAGAAGCGAGG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	37	+	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	37	+	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	55	+	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	61	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	61	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	61	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	66	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	63	73	+	11.9837	3.64e-05	0.0169	ACCACACCCAG
SP3	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	77	+	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	77	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	100	+	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	1	11	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	15	25	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	30	40	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	30	40	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	30	40	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	38	48	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	38	48	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	38	48	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	44	54	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	49	59	-	11.9837	3.64e-05	0.0169	GCCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	60	70	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
SP3	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	78	88	-	11.9837	3.64e-05	0.0169	GCCCCACCCTC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	-	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	-	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	+	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	-	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	-	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	-	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	+	12.2128	3.64e-05	0.182	GCTGAGTCACC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	+	12.2128	3.64e-05	0.182	GCTGAGTCACC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	13	33	-	10.8367	3.64e-05	0.0139	GGGGCTGGGGTGGCGGGGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	54	74	-	10.8367	3.64e-05	0.0139	CGGGGTGGCGGAGAGGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	35	55	+	10.8367	3.64e-05	0.0139	GGGGCGAGAGGGTGGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	54	74	+	10.8367	3.64e-05	0.0139	AAGGGTTCGGGGAGAGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	61	81	+	10.8367	3.64e-05	0.0139	TGAGGTAGCGGTGGAGGGGGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	15	-	11.6393	3.64e-05	0.0641	GCCCCCTCGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	+	11.6393	3.64e-05	0.0641	CCCCCTGCAGGCT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	-	11.7541	3.64e-05	0.0586	TGCCGCCGAGGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	10	26	-	6.03636	3.64e-05	0.0222	AGCTCCCCGCCCCCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	67	83	+	6.03636	3.64e-05	0.0222	CGTCCCCCGCCCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	67	83	+	6.03636	3.64e-05	0.0222	CGTCCCCCGCCCCCTCC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	6	20	+	9.7	3.64e-05	0.101	TCCCTCCCGCCGCTG
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	6	20	+	9.7	3.64e-05	0.101	TCCCTCCCGCCGCTG
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	14	28	+	9.7	3.64e-05	0.101	CGCCCCCTGGCGGGA
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	14	28	+	9.7	3.64e-05	0.101	CGCCCCCTGGCGGGA
ZIC3	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	95	109	-	9.7	3.64e-05	0.101	TCCCTCCCGCCGCTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	11	25	+	8.32759	3.64e-05	0.0347	CCCCGCCTCCCCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	11	25	+	8.32759	3.64e-05	0.0347	CCCCGCCTCCCCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	66	80	+	8.32759	3.64e-05	0.0347	CTCTGCCCACACATC
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	73	83	+	12.4082	3.64e-05	0.29	GCTTCCCAGAG
Spz1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	19	29	+	12.1	3.64e-05	0.753	GGGGTAACGGG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	66	79	+	12.4423	3.64e-05	0.196	CTTGAATGAGTCAT
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	36	49	-	12.4423	3.64e-05	0.196	CTTGAATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	13	23	+	12.5714	3.64e-05	0.182	GCATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	13	23	+	12.5714	3.64e-05	0.182	GCATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	21	31	-	12.5714	3.64e-05	0.182	GCATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	21	31	-	12.5714	3.64e-05	0.182	GCATGAGTCAT
ELF3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	81	93	-	9.96552	3.64e-05	0.134	CTGCCGGAAGTTC
EBF1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	76	89	-	10.6721	3.64e-05	0.365	CCTCCCATGAGACA
EBF1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	76	89	-	10.6721	3.64e-05	0.365	CCTCCCATGAGACA
EBF1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	76	89	-	10.6721	3.64e-05	0.365	CCTCCCATGAGACA
EBF1	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	27	40	+	10.6721	3.64e-05	0.365	CCTCCCATGAGACA
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	86	97	+	10.7455	3.64e-05	0.0999	TCCCCGGAAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	9	21	+	11.9344	3.64e-05	0.359	CAGGCTGCCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	31	43	+	11.9344	3.64e-05	0.359	CTGGCTGACCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	31	43	+	11.9344	3.64e-05	0.359	CTGGCTGACCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	31	43	+	11.9344	3.64e-05	0.359	CTGGCTGACCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	31	43	+	11.9344	3.64e-05	0.359	CTGGCTGACCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	85	97	+	11.9344	3.64e-05	0.359	CAGGCTGCCTCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	85	97	+	11.9344	3.64e-05	0.359	CAGGCTGCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	29	43	+	11.6897	3.64e-05	0.00994	GGACCGCCCCTCTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	29	43	+	11.6897	3.64e-05	0.00994	GGACCGCCCCTCTGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	39	53	+	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	39	53	+	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	39	53	+	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	66	80	+	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	35	49	-	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	35	49	-	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	35	49	-	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	35	49	-	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SP2	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	62	76	-	11.6897	3.64e-05	0.00994	CCTCCTCCCCCCACT
SPIC	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	68	81	-	11.8732	3.64e-05	0.214	CCAAAAGGGAAGAA
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	16	29	+	7.5	3.64e-05	0.0696	GGTGGCATCTGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	16	29	-	7.5	3.64e-05	0.0696	GGTGGCATCTGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	86	99	+	7.5	3.64e-05	0.0696	GGTGGCATCTGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	86	99	-	7.5	3.64e-05	0.0696	GGTGGCATCTGGGG
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	28	47	-	5.70642	3.64e-05	0.0515	CCCCGCCCCGCCACCTCAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	31	50	+	5.70642	3.64e-05	0.0515	CCCCGCCCCGCCACCTCAGC
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	61	71	-	12.2879	3.64e-05	0.269	AACCGCCATGG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	61	71	-	12.2879	3.64e-05	0.269	AACCGCCATGG
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	103	113	-	12.2879	3.64e-05	0.269	AACCGCCATGG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	103	113	-	12.2879	3.64e-05	0.269	AACCGCCATGG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	65	-	10.6557	3.64e-05	0.0972	GAACCGGAAGCT
REST	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	33	53	+	6.79592	3.65e-05	0.208	TTCATTACTGAGGACAAGTCC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	28	42	-	0.0909091	3.65e-05	0.506	AGTGAAAGCAAAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	40	54	-	0.0909091	3.65e-05	0.506	AGTGAAAGCAAAAGT
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	40	54	-	0.0909091	3.65e-05	0.506	AGTGAAAGCAAAAGT
FOXC1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	46	56	-	12.26	3.65e-05	1	TAAATAAATAA
FOXC1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	50	60	-	12.26	3.65e-05	1	TAAATAAATAA
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	63	74	-	11.5816	3.65e-05	0.156	AGCCTGGGGGAG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	63	74	-	11.5816	3.65e-05	0.156	AGCCTGGGGGAG
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	2.67308	3.65e-05	0.837	TGACAAGTGCCA
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	2.67308	3.65e-05	0.837	TGACAAGTGCCA
IRF8	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	66	79	+	0.581818	3.65e-05	0.686	ATGAAAGTGGAAGC
FOXB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	44	54	-	12.0962	3.65e-05	1	TATGTCAACAG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	6	26	-	10.4516	3.65e-05	0.162	CAATCCTCTCGTTTTCATTTC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	38	58	+	10.4516	3.65e-05	0.162	CAATCCTCTCGTTTTCATTTC
IRF1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	33	53	-	10.4516	3.65e-05	0.162	TTTTTGTTTTTTTTTTTTTTG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	62	82	+	10.4516	3.65e-05	0.162	TTTTTGTTTTTTTTTTTTTTG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	62	82	+	10.4516	3.65e-05	0.162	TTTTTGTTTTTTTTTTTTTTG
EHF	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	38	49	-	11.5574	3.65e-05	0.118	ACCCAGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	66	77	+	11.5574	3.65e-05	0.118	ACCCAGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	66	77	+	11.5574	3.65e-05	0.118	ACCCAGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	66	77	+	11.5574	3.65e-05	0.118	ACCCAGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	66	77	+	11.5574	3.65e-05	0.118	ACCCAGGAAGTG
RUNX1	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	61	71	+	12.1379	3.65e-05	0.227	TCCTGTGGTCA
PAX1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	27	43	-	7.63636	3.65e-05	0.541	CGCCCCGCCCGGCTGCC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	37	51	+	11.5636	3.65e-05	0.308	GGCAAGAGAAAGCTG
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	56	70	+	11.5636	3.65e-05	0.308	AAAGAGTGAAACTAG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	56	70	+	11.5636	3.65e-05	0.308	AAAGAGTGAAACTAG
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	52	72	+	10.9796	3.65e-05	0.929	GATGGGCGGAGTCAGCGAGAG
MAFG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	52	72	+	10.9796	3.65e-05	0.929	GATGGGCGGAGTCAGCGAGAG
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	52	72	+	10.9796	3.65e-05	0.929	GATGGGCGGAGTCAGCGAGAG
MAFG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	52	72	+	10.9796	3.65e-05	0.929	GATGGGCGGAGTCAGCGAGAG
MAFG	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	43	63	-	10.9796	3.65e-05	0.929	GATGGGCGGAGTCAGCGAGAG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	64	77	-	5.90909	3.65e-05	0.379	GACCCCCTAGACTG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	64	77	-	5.90909	3.65e-05	0.379	GACCCCCTAGACTG
ETV2	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	41	51	+	11.8361	3.65e-05	0.137	AACAGGAAGCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	4	23	-	5.69725	3.65e-05	0.0515	TCACCCCCCCCCCCCCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	4	23	-	5.69725	3.65e-05	0.0515	TCACCCCCCCCCCCCCTCCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	14	27	-	11.5385	3.66e-05	0.0173	ACCCCTCCTCCACT
TBX19	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	55	74	+	10.5854	3.66e-05	1	TTCGGCGACTAGGTGTGAGT
TBX19	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	55	74	+	10.5854	3.66e-05	1	TTCGGCGACTAGGTGTGAGT
TBX19	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	55	74	+	10.5854	3.66e-05	1	TTCGGCGACTAGGTGTGAGT
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	55	74	+	10.5854	3.66e-05	1	TTCGGCGACTAGGTGTGAGT
TBX19	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	41	60	-	10.5854	3.66e-05	1	TTCGGCGACTAGGTGTGAGT
HINFP	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	53	64	+	11.8788	3.66e-05	0.109	TAGCGTCCCCGC
NFYA	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	13	30	+	10.6341	3.66e-05	0.127	GGCTCTCGGATTGGCTGG
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	12.3654	3.66e-05	0.131	AACACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	12.3654	3.66e-05	0.131	AACACGTGCC
E2F4	WILDTYPE__Lincrna.flip.sense__chr20:37063936..37064050,-__473.1.0.0	41	51	+	12.3621	3.66e-05	0.0454	CGGCGCGAAAC
E2F4	FLIPPED__Lincrna.flip.antisense__chr20:37063936..37064050,+__2383.1.0.0	64	74	-	12.3621	3.66e-05	0.0454	CGGCGCGAAAC
XBP1	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	24	37	+	11.1538	3.66e-05	0.479	CGTAACACGTCAGT
Tcf7	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	46	57	+	10.7742	3.66e-05	1	AAGGAGCAAAGG
Tcf7	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	58	69	-	10.7742	3.66e-05	1	AAGGAGCAAAGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	19	35	-	6.01818	3.66e-05	0.0222	TCAGCCACTCCCAACAT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	19	35	-	6.01818	3.66e-05	0.0222	TCAGCCACTCCCAACAT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	39	55	+	6.01818	3.66e-05	0.0222	CCAGTCCCGCCCCCAGG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	39	55	+	6.01818	3.66e-05	0.0222	CCAGTCCCGCCCCCAGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	39	55	+	6.01818	3.66e-05	0.0222	CCAGTCCCGCCCCCAGG
SP4	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	31	47	-	6.01818	3.66e-05	0.0222	TCAGCACCGCCCCCAGC
SP4	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	68	84	+	6.01818	3.66e-05	0.0222	TCAGCACCGCCCCCAGC
SP4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	60	76	-	6.01818	3.66e-05	0.0222	CCAGTCCCGCCCCCAGG
PITX3	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	19	27	-	11.6538	3.66e-05	1	TTTAATCCC
PITX3	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	27	-	11.6538	3.66e-05	1	TTTAATCCC
PITX3	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	19	27	-	11.6538	3.66e-05	1	TTTAATCCC
PITX3	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	19	27	-	11.6538	3.66e-05	1	TTTAATCCC
PITX3	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	27	-	11.6538	3.66e-05	1	TTTAATCCC
PITX3	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	42	50	+	11.6538	3.66e-05	1	TTTAATCCC
PITX3	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	88	96	+	11.6538	3.66e-05	1	TTTAATCCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	13	22	+	12.051	3.66e-05	0.0172	GGGGTGGGTC
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	4	14	-	12.9388	3.66e-05	0.158	AGCAGCTGTGG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	4	14	-	12.9388	3.66e-05	0.158	AGCAGCTGTGG
Tcf12	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	13	23	-	12.9388	3.66e-05	0.158	AACAGCTGAGA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	73	83	-	12.9388	3.66e-05	0.158	GACAGGTGGAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	73	83	-	12.9388	3.66e-05	0.158	GACAGGTGGAG
Tcf12	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	102	+	12.9388	3.66e-05	0.158	AACAGCTGAGA
PAX9	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	97	113	-	3.16364	3.66e-05	0.463	AGTCACGGCTGATCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	74	86	+	12.8776	3.66e-05	0.143	TCCACCTGTCTTC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	74	86	+	12.8776	3.66e-05	0.143	TCCACCTGTCTTC
EGR3	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	2	16	-	8.31034	3.66e-05	0.0347	CCCCTCCCCCGCCGA
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	7	21	-	8.31034	3.66e-05	0.0347	AGCCACCCACACACA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	7	21	-	8.31034	3.66e-05	0.0347	AGCCACCCACACACA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	19	33	-	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	19	33	-	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	19	33	-	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	19	33	-	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	19	33	-	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	44	58	+	8.31034	3.66e-05	0.0347	CCCCTCCCCCGCCGA
EGR3	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	31	45	-	8.31034	3.66e-05	0.0347	TCCCTCCCCCACACC
EGR3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	54	68	+	8.31034	3.66e-05	0.0347	TCCCTCCCCCACACC
EGR3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	47	61	-	8.31034	3.66e-05	0.0347	TCCCTCCCCCACACC
EGR3	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	70	84	+	8.31034	3.66e-05	0.0347	TCCCTCCCCCACACC
EGR3	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	57	71	-	8.31034	3.66e-05	0.0347	CCCCTCCCCCGCCGA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	80	94	+	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	80	94	+	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	80	94	+	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	80	94	+	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	80	94	+	8.31034	3.66e-05	0.0347	TTACGCCGCCGCCCA
EGR3	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	99	113	+	8.31034	3.66e-05	0.0347	CCCCTCCCCCGCCGA
INSM1	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	52	63	+	11.5714	3.66e-05	0.156	GTGCAGGGGGTG
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	32	-	12.3273	3.66e-05	0.0529	TGACTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	92	-	12.3273	3.66e-05	0.0529	TGACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	92	-	12.3273	3.66e-05	0.0529	TGACTTCCGGA
ELK4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	23	33	+	12.3273	3.66e-05	0.0529	TGACTTCCGGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	39	-	11.0816	3.66e-05	0.338	GGTTGGGGCAGAGGCCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	39	-	11.0816	3.66e-05	0.338	GGTTGGGGCAGAGGCCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	91	107	+	11.0816	3.66e-05	0.338	GGTTGGGGCAGAGGCCA
EMX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	-	10.8053	3.66e-05	1	CTTAATTACT
HLF	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	-	12.3729	3.66e-05	1	GCTTATGTAACA
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.1	42	58	+	12.0921	3.66e-05	1	GGGAAGCTGTTATGGCT
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.1.0	42	58	+	12.0921	3.66e-05	1	GGGAAGCTGTTATGGCT
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	78	94	+	12.0921	3.66e-05	1	GGGAAGCTGTTATGGCT
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	78	94	+	12.0921	3.66e-05	1	GGGAAGCTGTTATGGCT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	46	57	-	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	46	57	-	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	47	58	-	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	57	68	+	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	57	68	+	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	63	74	+	11.9857	3.66e-05	0.217	TCCGCCCACCCC
ZIC1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	2	15	+	8.17021	3.66e-05	0.0959	GCCGCCCTGCCGAG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	10	23	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	10	23	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	10	23	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	10	23	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	7	20	-	8.17021	3.66e-05	0.0959	CCCCCCCTGCTCTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	35	48	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	35	48	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	35	48	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	35	48	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	35	48	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	55	68	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	67	80	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	67	80	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	67	80	+	8.17021	3.66e-05	0.0959	CCCGCCCCGCCGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	100	113	-	8.17021	3.66e-05	0.0959	GCCGCCCTGCCGAG
Id2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	6	13	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	7	14	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	12	19	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	21	28	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	25	32	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	25	32	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	32	39	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	32	39	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	40	47	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	46	53	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	46	53	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	46	53	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	39	46	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	41	48	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	55	62	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	67	74	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	69	76	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	62	69	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	68	75	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	68	75	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	68	75	-	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	87	94	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	96	103	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	96	103	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	96	103	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	96	103	+	13.2131	3.66e-05	0.306	ACACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	102	109	+	13.2131	3.66e-05	0.306	ACACGTGA
GLIS1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	83	98	+	-6.07692	3.66e-05	0.329	AGTCCCCCCGCCTCGC
GLIS1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	17	32	-	-6.07692	3.66e-05	0.329	AGTCCCCCCGCCTCGC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	73	83	-	12.9184	3.66e-05	0.137	GACAGGTGGAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	73	83	-	12.9184	3.66e-05	0.137	GACAGGTGGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	+	11.0364	3.66e-05	0.232	ATCACGAGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	+	11.0364	3.66e-05	0.232	ATCACGAGAT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	18	29	-	12.0161	3.66e-05	0.281	CCGCCCCCCGAA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	18	29	-	12.0161	3.66e-05	0.281	CCGCCCCCCGAA
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	18	29	-	12.0161	3.66e-05	0.281	CCGCCCCCCGAA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	18	29	-	12.0161	3.66e-05	0.281	CCGCCCCCCGAA
Zfx	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	11	24	+	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	44	57	-	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	44	57	-	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	44	57	-	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	44	57	-	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	58	71	+	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	48	61	-	12.0909	3.66e-05	0.0471	CCCGCCTGAGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	91	104	-	12.0909	3.66e-05	0.0471	CCTAGCTAGGCCTC
GSC2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	2	11	+	11.3051	3.66e-05	1	CCTAATCCTT
GSC2	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	69	78	-	11.3051	3.66e-05	1	CCTAATCCTT
GSC2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	104	113	-	11.3051	3.66e-05	1	CCTAATCCTT
GSC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	104	113	-	11.3051	3.66e-05	1	CCTAATCCTT
E2F6	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	4	14	+	12.5345	3.66e-05	0.0523	GGGTGGGAGGC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	31	41	+	12.5345	3.66e-05	0.0523	GGGTGGGAGGC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	52	62	+	12.5345	3.66e-05	0.0523	GCGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	50	60	-	12.5345	3.66e-05	0.0523	GGGTGGGAGGC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	52	62	-	12.5345	3.66e-05	0.0523	GCGAGGGAGAG
E2F6	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	101	111	-	12.5345	3.66e-05	0.0523	GGGTGGGAGGC
Klf12	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	69	83	+	9.93443	3.67e-05	0.0512	GGCCCCGCCTTACTC
GCM2	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	50	59	+	12.082	3.67e-05	0.718	GGTGCGGGCG
EGR2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	6	16	+	10.8793	3.67e-05	0.0799	GCGCCCCCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	5	15	-	10.8793	3.67e-05	0.0799	CCGCCCCCTCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	5	15	-	10.8793	3.67e-05	0.0799	CCGCCCCCTCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	31	41	-	10.8793	3.67e-05	0.0799	CCGCCCCCTCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	53	63	-	10.8793	3.67e-05	0.0799	CCGCCCCCTCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	53	63	-	10.8793	3.67e-05	0.0799	CCGCCCCCTCA
NFKB1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	56	68	-	4.55102	3.67e-05	0.233	AGCGAAATCCCCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	47	59	+	4.55102	3.67e-05	0.233	AGCGAAATCCCCT
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	47	59	+	4.55102	3.67e-05	0.233	AGCGAAATCCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	47	59	+	4.55102	3.67e-05	0.233	AGCGAAATCCCCT
HEY2	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	+	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	-	11.931	3.67e-05	0.16	GGCGCGTGCG
HEY2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	94	103	+	11.931	3.67e-05	0.16	GGAACGTGCC
HEY2	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	-	11.931	3.67e-05	0.16	GGCGCGTGCG
TP53	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	33	50	-	8.22449	3.67e-05	0.979	GACGCGCCCCGGCCTGTG
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	33	50	-	8.22449	3.67e-05	0.979	GACGCGCCCCGGCCTGTG
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	96	113	+	8.22449	3.67e-05	0.979	CACATGATGGAGCATGAC
TP53	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	96	113	+	8.22449	3.67e-05	0.979	CACATGATGGAGCATGAC
RXRB	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	17	30	+	3.07273	3.67e-05	0.47	GAGGTGAAGGGGCG
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	25	39	+	11.7885	3.67e-05	0.426	AGGTCACAGTTGCCC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	25	39	+	11.7885	3.67e-05	0.426	AGGTCACAGTTGCCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	75	89	-	11.7885	3.67e-05	0.426	AGGTCACAGTTGCCC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	75	89	-	11.7885	3.67e-05	0.426	AGGTCACAGTTGCCC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	-	11.623	3.67e-05	0.0641	CGCCTTAAAGGCA
Foxj3	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	13	29	-	12.2078	3.67e-05	1	GGGAAATCAACAAAACC
Foxj3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	50	66	-	12.2078	3.67e-05	1	GGGAAATCAACAAAACC
Foxj3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	50	66	-	12.2078	3.67e-05	1	GGGAAATCAACAAAACC
LIN54	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	50	58	+	11.873	3.67e-05	1	ATTTAAATT
LIN54	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	50	58	+	11.873	3.67e-05	1	ATTTAAATT
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	-	12.1915	3.67e-05	0.182	AATGACTCACA
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	2	15	+	9.14286	3.67e-05	0.151	AAATGAGGTCATAA
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	2	15	+	9.14286	3.67e-05	0.151	AAATGAGGTCATAA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	+	12.3636	3.67e-05	0.0515	TGCCTGAAGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	-	12.3636	3.67e-05	0.0515	AGCCCTAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	-	12.3636	3.67e-05	0.0515	AGCCCTAGGCG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	17	34	+	-11.0263	3.67e-05	0.0365	GGAAGGCTTGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	25	42	+	-11.0263	3.67e-05	0.0365	GGAAGGCTTGGAGGAGGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	73	90	-	-11.0263	3.67e-05	0.0365	GGAAGGCTTGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	81	98	-	-11.0263	3.67e-05	0.0365	GGAAGGCTTGGAGGAGGA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	1	11	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	13	23	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	28	38	+	12.1803	3.67e-05	0.0489	CCGGAAACGCG
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	34	44	+	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	37	47	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	46	56	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	46	56	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	50	60	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	79	89	+	12.1803	3.67e-05	0.0489	CAGGAAGTGAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	79	89	+	12.1803	3.67e-05	0.0489	CAGGAAGTGAA
Gabpa	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	71	81	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	77	87	-	12.1803	3.67e-05	0.0489	CCGGAAACGCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	77	87	-	12.1803	3.67e-05	0.0489	CCGGAAACGCG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	77	87	-	12.1803	3.67e-05	0.0489	CCGGAAACGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	77	87	-	12.1803	3.67e-05	0.0489	CCGGAAACGCG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	81	91	-	12.1803	3.67e-05	0.0489	GCGGAAGCCGG
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	17	33	-	0.166667	3.67e-05	0.785	GGGCCATGCCAGGGCCA
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	18	32	+	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	18	32	+	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	18	32	+	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	62	76	+	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	39	53	-	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	39	53	-	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	39	53	-	9.22951	3.67e-05	0.713	AAGCAACAGGCTGGG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	33	44	+	12.1636	3.67e-05	0.0548	TCCCCCCCGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	71	82	-	12.1636	3.67e-05	0.0548	TCCCCCCCGGCC
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	74	83	+	12	3.67e-05	1	TTTTTCCACA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	85	99	-	10.7571	3.67e-05	0.11	GCAGGTTAGGGGCCG
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	88	97	+	11.7581	3.67e-05	0.719	AACATTCCTT
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	30	+	11.8553	3.67e-05	0.0258	GTCCCGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	31	42	-	11.8553	3.67e-05	0.0258	GTCCCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	31	42	-	11.8553	3.67e-05	0.0258	GTCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	31	42	-	11.8553	3.67e-05	0.0258	GTCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	31	42	-	11.8553	3.67e-05	0.0258	GTCCCGCCCCCC
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	76	87	-	2.63462	3.67e-05	0.837	TGACATCTGAAA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	76	87	-	2.63462	3.67e-05	0.837	TGACATCTGAAA
ELF1	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	69	80	-	10.7273	3.67e-05	0.0999	GACCAGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	81	92	+	10.7273	3.67e-05	0.0999	GACCAGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	81	92	+	10.7273	3.67e-05	0.0999	GACCAGGAAGCG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	3	13	-	12.3455	3.67e-05	0.168	AATGAGTCATT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	3	13	-	12.3455	3.67e-05	0.168	AATGAGTCATT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	35	45	-	12.3455	3.67e-05	0.168	AATGAGTCATT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	80	+	12.3455	3.67e-05	0.168	AATGAGTCATT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	101	111	+	12.3455	3.67e-05	0.168	AATGAGTCATT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	101	111	+	12.3455	3.67e-05	0.168	AATGAGTCATT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	+	11.7377	3.68e-05	0.0586	GGCCCTCGCGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	-	11.7377	3.68e-05	0.0586	GGCCCTCGCGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	+	11.7377	3.68e-05	0.0586	GGCCCTCGCGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	-	11.7377	3.68e-05	0.0586	GGCCCTCGCGGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	27	41	-	11.6724	3.68e-05	0.01	CTCCCGCCTTTCCTT
INSM1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	1	12	-	11.5612	3.68e-05	0.156	GGGATGGGGGTG
INSM1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	1	12	-	11.5612	3.68e-05	0.156	GGGATGGGGGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	11.5319	3.68e-05	0.0808	TCCGGAAGCA
FOXP2	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	13	23	-	12.9242	3.68e-05	1	GAATAAACAAA
FOXP2	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	92	102	+	12.9242	3.68e-05	1	GAATAAACAAA
BATF3	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	54	67	-	3.31818	3.68e-05	0.156	GGGTGACGGCACCT
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	7	26	-	5.6789	3.68e-05	0.0515	CCCCACCCCCACCAAGCACA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	-	11.4655	3.68e-05	0.0554	CGCCCCCGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	-	11.4655	3.68e-05	0.0554	CGCCCTCGCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	-	11.4655	3.68e-05	0.0554	CGCCCTCGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	+	11.4655	3.68e-05	0.0554	CGCCCCCGCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	+	11.4655	3.68e-05	0.0554	CGCCCCCGCGGCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	12.6885	3.68e-05	0.333	CGCACGTGGC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	12.6885	3.68e-05	0.333	CGCACGTGGC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	92	105	+	12.4231	3.68e-05	0.196	GGGCGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	92	105	+	12.4231	3.68e-05	0.196	GGGCGCTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	18	31	-	12.4231	3.68e-05	0.196	GGGCGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	18	31	-	12.4231	3.68e-05	0.196	GGGCGCTGAGTCAC
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	-	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	-	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	+	12.2692	3.68e-05	0.0703	AGCCCGCGGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	11	-	11.6727	3.68e-05	0.225	AGCCGGAAGTT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	11	-	11.6727	3.68e-05	0.225	AGCCGGAAGTT
SPDEF	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	24	34	+	11.6727	3.68e-05	0.225	AGCCGGAAGTT
SPDEF	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	91	-	11.6727	3.68e-05	0.225	AGCCGGAAGTT
SP4	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	29	45	-	6	3.68e-05	0.0222	CAAGACCCACCCACAGA
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	28	38	+	12.6	3.68e-05	0.155	TCGTGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	28	38	+	12.6	3.68e-05	0.155	TCGTGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	40	50	-	12.6	3.68e-05	0.155	TCGTGAGTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	75	85	+	12.6	3.68e-05	0.155	TCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	83	93	-	12.6	3.68e-05	0.155	TCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	83	93	-	12.6	3.68e-05	0.155	TCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	83	93	-	12.6	3.68e-05	0.155	TCATGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	83	93	-	12.6	3.68e-05	0.155	TCATGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	83	93	-	12.6	3.68e-05	0.155	TCATGAGTCAT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	55	75	-	10.8163	3.68e-05	0.0141	TGGAGATGGCGGTGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	55	75	-	10.8163	3.68e-05	0.0141	TGGAGATGGCGGTGGGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	55	75	-	10.8163	3.68e-05	0.0141	TGGAGATGGCGGTGGGGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	57	77	-	10.8163	3.68e-05	0.0141	AGGGGCCGGCGGGCGGGGAGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	40	60	+	10.8163	3.68e-05	0.0141	TGGAGATGGCGGTGGGGAGGA
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	39	54	+	3.93103	3.68e-05	0.299	TTCCCAGGGTCCATGG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	5	17	+	10.0152	3.68e-05	0.25	AGGGTGTCCCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	5	17	+	10.0152	3.68e-05	0.25	AGGGTGTCCCCCA
ELF4	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	20	31	+	10.623	3.68e-05	0.0972	CTTCCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	80	91	+	10.623	3.68e-05	0.0972	CTTCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	80	91	+	10.623	3.68e-05	0.0972	CTTCCGGAAGTC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	23	-	10.623	3.68e-05	0.0972	CAGCAGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	35	-	10.623	3.68e-05	0.0972	CTTCCGGAAGTC
Klf1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	18	28	+	12.0758	3.68e-05	0.0468	CCCCCCACCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	100	110	+	12.0758	3.68e-05	0.0468	CCCCCCACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	1	11	-	12.0758	3.68e-05	0.0468	AGCCACACCTT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	1	11	-	12.0758	3.68e-05	0.0468	AGCCACACCTT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	1	11	-	12.0758	3.68e-05	0.0468	AGCCACACCTT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	1	11	-	12.0758	3.68e-05	0.0468	AGCCACACCTT
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	5	15	-	12.0758	3.68e-05	0.0468	CCCCCCACCCT
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	25	39	-	9.67143	3.68e-05	0.101	CCCCCCCCGCCAAGT
SP1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	7	17	-	12.2115	3.68e-05	0.0115	TTTCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	54	64	+	12.2115	3.68e-05	0.0115	GTCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	54	64	+	12.2115	3.68e-05	0.0115	GTCCCTCCCTT
SP1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	98	108	+	12.2115	3.68e-05	0.0115	TTTCCGCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	104	114	-	12.2115	3.68e-05	0.0115	GTCCCACCCAC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	44	62	-	10.082	3.68e-05	0.107	CGGGCAGGGGAGGGCGCGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	44	62	-	10.082	3.68e-05	0.107	CGGGCAGGGGAGGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	70	88	+	10.082	3.68e-05	0.107	TGCCCACTGGGTGAAACTG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	70	88	+	10.082	3.68e-05	0.107	TGCCCACTGGGTGAAACTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	24	38	-	8.2931	3.68e-05	0.0348	CTCCGCCCCCACCGA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	46	60	-	8.2931	3.68e-05	0.0348	CTCCGCCCCCACCGA
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	24	33	+	12.0225	3.68e-05	0.93	CTTCTGGCAT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	101	110	-	12.0225	3.68e-05	0.93	TGTCTGGCAC
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	101	110	-	12.0225	3.68e-05	0.93	TGTCTGGCAC
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	73	87	+	11.7477	3.68e-05	0.164	CCGGGGTAGAGGGCG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	51	59	+	12.9273	3.68e-05	0.344	CTTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	51	59	+	12.9273	3.68e-05	0.344	CTTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	100	108	-	12.9273	3.68e-05	0.344	CTTCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	100	108	-	12.9273	3.68e-05	0.344	CTTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	100	108	-	12.9273	3.68e-05	0.344	CTTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	100	108	-	12.9273	3.68e-05	0.344	CTTCACCTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	4	17	-	10.3448	3.68e-05	0.0288	TGTCACGCCCTTCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	26	39	-	10.3448	3.68e-05	0.0288	GGCCCCTCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	26	39	-	10.3448	3.68e-05	0.0288	GGCCCCTCCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	26	39	-	10.3448	3.68e-05	0.0288	GGCCCCTCCCCCTG
SMAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	105	114	+	10.7818	3.68e-05	1	CGGCTAGACT
SMAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	105	114	+	10.7818	3.68e-05	1	CGGCTAGACT
SMAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	105	114	+	10.7818	3.68e-05	1	CGGCTAGACT
RARA	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	26	43	-	-6.45455	3.68e-05	1	GAGAGGAAAAGGTCAACC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12.2727	3.68e-05	0.1	GCCGGAAATG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12.2727	3.68e-05	0.1	GCCGGAAATG
ETV1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12.2727	3.68e-05	0.1	GCCGGAAATG
ETV1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12.2727	3.68e-05	0.1	GCCGGAAATG
ETV1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12.2727	3.68e-05	0.1	GCCGGAAATG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	12.2727	3.68e-05	0.1	ACCGGAAGAA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	12.2727	3.68e-05	0.1	ACCGGAAGAA
ZIC4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	47	61	+	11.4909	3.69e-05	0.108	ACCCCCCCACGGTCC
ZIC4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	54	68	-	11.4909	3.69e-05	0.108	ACCCCCCCACGGTCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	8	27	-	5.66972	3.69e-05	0.0515	CGCCACACCCCCAACCCACT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	69	+	5.66972	3.69e-05	0.0515	CCCCCGCCCCCCCCCCGTGC
HOXD13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	45	54	-	12.3016	3.69e-05	1	GTAATAAAAT
HOXD13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	45	54	-	12.3016	3.69e-05	1	GTAATAAAAT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	3	15	+	11.6066	3.69e-05	0.0641	CGCCCGACGGGCT
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	-	11.6066	3.69e-05	0.0641	TGCCTGGGAGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	+	11.6066	3.69e-05	0.0641	TGCCTGGGAGGCT
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	+	11.6066	3.69e-05	0.0641	TGCCTGGGAGGCT
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	100	112	-	11.6066	3.69e-05	0.0641	CGCCCGACGGGCT
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	5	16	+	11.9714	3.69e-05	0.217	CCCGCCCACCCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	26	37	+	11.9714	3.69e-05	0.217	CCCGCCCACCCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	53	64	+	11.9714	3.69e-05	0.217	CCCGCCCACCCC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	99	-	9.7541	3.69e-05	0.177	GACCCCCTAGGGCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	43	56	+	7.46939	3.69e-05	0.0696	GGGGCTGAGGGGAG
MYF6	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	11.8788	3.69e-05	1	AACAGCTGTG
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	11.8788	3.69e-05	1	AACAGCTGTG
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	11.8788	3.69e-05	1	AACAGCTGTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	86	96	-	12.1207	3.69e-05	0.227	ACCTGTGGCTT
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	80	93	-	7.38776	3.69e-05	0.365	GGGCACTTTGCCAG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	42	55	+	3.30303	3.69e-05	0.156	ACCTGACGTCATAT
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	42	55	+	3.30303	3.69e-05	0.156	ACCTGACGTCATAT
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	42	55	+	3.30303	3.69e-05	0.156	ACCTGACGTCATAT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	2	15	-	8.14894	3.69e-05	0.0959	CGCCGCCCGCTGCC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	2	15	-	8.14894	3.69e-05	0.0959	CGCCGCCCGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	2	15	-	8.14894	3.69e-05	0.0959	CGCCGCCCGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	49	62	+	8.14894	3.69e-05	0.0959	TCCTCCCTGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	49	62	+	8.14894	3.69e-05	0.0959	TCCTCCCTGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	49	62	+	8.14894	3.69e-05	0.0959	TCCTCCCTGCCGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	35	48	-	11.5192	3.69e-05	0.0175	CAACCTCCCCCGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	64	77	-	11.5192	3.69e-05	0.0175	CTCCCGCCTCCTTG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	72	85	-	11.5192	3.69e-05	0.0175	CTTCCTCCCACTTC
EGR2	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	19	29	-	10.8621	3.69e-05	0.0799	ACACCCCCGCG
RUNX3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	77	86	-	12.4231	3.69e-05	0.439	TAACCACAAC
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	77	86	-	12.4231	3.69e-05	0.439	TAACCACAAC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	77	86	-	12.4231	3.69e-05	0.439	TAACCACAAC
RUNX3	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	29	38	+	12.4231	3.69e-05	0.439	TAACCACAAC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	30	44	+	11.5303	3.69e-05	0.0939	GTCTCATGAGATCTG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	30	44	+	11.5303	3.69e-05	0.0939	GTCTCATGAGATCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	30	44	+	11.5303	3.69e-05	0.0939	GTCTCATGAGATCTG
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	30	44	+	11.5303	3.69e-05	0.0939	GTCTCATGAGATCTG
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	30	44	+	11.5303	3.69e-05	0.0939	GTCTCATGAGATCTG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	+	7.73469	3.69e-05	0.248	GGTGACTCACA
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	+	7.73469	3.69e-05	0.248	GGTGACTCACA
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	+	7.73469	3.69e-05	0.248	GGTGACTCACA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	-	7.73469	3.69e-05	0.248	GGTGACTCACA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	25	38	+	9.12857	3.69e-05	0.151	CCCTGACGTCAGCG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	25	38	+	9.12857	3.69e-05	0.151	CCCTGACGTCAGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	+	12.051	3.69e-05	0.0857	GCCCCTGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	+	12.051	3.69e-05	0.0857	GCCCCTGGGGCA
GATA1::TAL1	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	56	73	-	12.0182	3.69e-05	0.915	CTTATCAGGTTCAAGCTC
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	18	27	+	12.4719	3.69e-05	0.871	ATGATGTGAT
Rarg	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	22	37	+	0.387755	3.69e-05	0.877	CAGGTCAGATGGTCAA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	15	25	+	12.4898	3.69e-05	0.788	ATTTCAAAATC
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	38	48	-	12.4898	3.69e-05	0.788	ATTTCAAAATC
TCF7L2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	19	32	-	12.1818	3.7e-05	1	AGAGATCAAAGTTC
TCF7L2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	19	32	-	12.1818	3.7e-05	1	AGAGATCAAAGTTC
ELF3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	47	59	+	9.93103	3.7e-05	0.134	AGGCCGGAAGTAC
ELF3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	56	68	-	9.93103	3.7e-05	0.134	AGGCCGGAAGTAC
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	+	7.30612	3.7e-05	0.991	TGTGACATGCTGTACCC
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	+	7.30612	3.7e-05	0.991	TGTGACATGCTGTACCC
NR3C1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	-	7.30612	3.7e-05	0.991	TGTGACATGCTGTACCC
NR3C1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	-	7.30612	3.7e-05	0.991	TGTGACATGCTGTACCC
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	6	19	-	12.0758	3.7e-05	0.0471	CGAGTCCGGGCCTA
Zfx	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	40	53	-	12.0758	3.7e-05	0.0471	CGAGTCCGGGCCTA
Zfx	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	62	75	+	12.0758	3.7e-05	0.0471	CGAGTCCGGGCCTA
Zfx	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	79	92	-	12.0758	3.7e-05	0.0471	GGGGGAGGGGCCTG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	28	47	-	5.66055	3.7e-05	0.0515	CCCCGCCCCCCCACCTCAGC
RREB1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	65	84	-	5.66055	3.7e-05	0.0515	CCCCGCCCCCCCACCTCAGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	31	50	+	5.66055	3.7e-05	0.0515	CCCCGCCCCCCCACCTCAGC
RREB1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	68	87	+	5.66055	3.7e-05	0.0515	CCCCGCCCCCCCACCTCAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	15	31	+	5.98182	3.7e-05	0.0222	ACGGCCCCGCCCCGGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	15	31	+	5.98182	3.7e-05	0.0222	ACGGCCCCGCCCCGGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	15	31	+	5.98182	3.7e-05	0.0222	ACGGCCCCGCCCCGGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	15	31	+	5.98182	3.7e-05	0.0222	ACGGCCCCGCCCCGGGC
SP4	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	22	38	-	5.98182	3.7e-05	0.0222	CCAGACCCGCCCTTCCG
SP4	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	41	57	-	5.98182	3.7e-05	0.0222	CCAGACCCGCCCTTCCG
SP4	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	58	74	+	5.98182	3.7e-05	0.0222	CCAGACCCGCCCTTCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	59	75	+	5.98182	3.7e-05	0.0222	TTCTCCACGCCCCTGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	59	75	+	5.98182	3.7e-05	0.0222	TTCTCCACGCCCCTGCG
ELF1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	25	36	+	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
ELF1	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	21	32	-	10.7091	3.7e-05	0.0999	GTCCAGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	46	57	+	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	46	57	+	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
ELF1	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	53	64	+	10.7091	3.7e-05	0.0999	GTCCAGGAAGTA
ELF1	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	51	62	-	10.7091	3.7e-05	0.0999	GTCCAGGAAGTA
ELF1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	69	-	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	90	-	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	90	-	10.7091	3.7e-05	0.0999	AGACCGGAAGCG
KLF5	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	29	38	-	12.3878	3.7e-05	0.0165	TCCACACCCT
KLF5	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	77	86	+	12.3878	3.7e-05	0.0165	TCCACACCCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	-	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	+	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	+	12.25	3.7e-05	0.0703	CGCCGCAGGCC
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	+	12.25	3.7e-05	0.0703	CGCCGCAGGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	25	34	+	10.1048	3.7e-05	0.0452	AGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	25	34	+	10.1048	3.7e-05	0.0452	AGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	25	34	-	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	25	34	-	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	36	45	+	10.1048	3.7e-05	0.0452	AGCGCGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	36	45	-	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	56	65	+	10.1048	3.7e-05	0.0452	AGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	56	65	-	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	70	79	+	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	70	79	+	10.1048	3.7e-05	0.0452	TGCGCGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	70	79	-	10.1048	3.7e-05	0.0452	AGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	70	79	-	10.1048	3.7e-05	0.0452	AGCGCGCGCA
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	30	44	+	12.0426	3.7e-05	0.311	GGCAGTGATGTCAGG
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	62	76	-	12.0426	3.7e-05	0.311	GGCAGTGATGTCAGG
Vdr	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	57	72	+	6.09836	3.7e-05	0.833	GGGGGCACCGGGGTCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	32	47	+	11.3636	3.7e-05	0.0374	GCCCGCCCACTCCTCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	32	47	+	11.3636	3.7e-05	0.0374	GCCCGCCCACTCCTCG
FOS	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	21	31	-	12.5745	3.7e-05	0.211	AGTGATTCATT
FOS	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	88	98	+	12.5745	3.7e-05	0.211	AGTGATTCATT
INSM1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	30	41	+	11.5306	3.7e-05	0.156	GGGAAGGGGCCG
INSM1	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	32	43	+	11.5306	3.7e-05	0.156	GGGAAGGGGCCG
Nkx2-5(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	5	15	+	12.5091	3.7e-05	0.721	TGCCACTCCAG
Nkx2-5(var.2)	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	29	39	-	12.5091	3.7e-05	0.721	TGCCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	76	86	+	12.5091	3.7e-05	0.721	TGCCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	76	86	+	12.5091	3.7e-05	0.721	TGCCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	76	86	+	12.5091	3.7e-05	0.721	TGCCACTCCAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	76	86	+	12.5091	3.7e-05	0.721	TGCCACTCCAG
ZIC3	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	4	18	+	9.65714	3.7e-05	0.101	CCCTCCCCCCGGCGC
ZIC3	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	97	111	-	9.65714	3.7e-05	0.101	CCCTCCCCCCGGCGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	14	24	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	56	66	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	56	66	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	87	97	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	87	97	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	87	97	+	12.1639	3.7e-05	0.0489	GCGGAAGGGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	26	40	-	8.27586	3.7e-05	0.0348	CCCCGGCCACGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	26	40	-	8.27586	3.7e-05	0.0348	CCCCGGCCACGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	31	45	-	8.27586	3.7e-05	0.0348	CTACGCCCCGGCCAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	31	45	-	8.27586	3.7e-05	0.0348	CTACGCCCCGGCCAC
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	76	90	+	8.27586	3.7e-05	0.0348	CTCCGCCCCGGCCCG
ETV3	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	12	3.7e-05	0.104	ACAGGAAGTG
ETV3	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	12	3.7e-05	0.104	ACAGGAAGTG
RARA(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	6	22	-	5.18033	3.7e-05	0.563	AGGTCAGCGCTGGGTGA
RARA(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	93	109	+	5.18033	3.7e-05	0.563	AGGTCAGCGCTGGGTGA
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	59	75	-	11.2105	3.7e-05	0.604	ACTGTGACGTAACACGT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.0.0	8	22	+	11.7387	3.7e-05	0.164	GAAGGCCAAAGTGGA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	33	47	+	11.7387	3.7e-05	0.164	CCGGGGCAGAGGCGG
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	24	38	-	11.7387	3.7e-05	0.164	GGTGGAGAAAGGTGA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	77	91	+	11.7387	3.7e-05	0.164	GGTGGAGAAAGGTGA
BATF3	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	18	31	+	3.28788	3.71e-05	0.156	CGCTGAGGTCATCG
BATF3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	54	67	+	3.28788	3.71e-05	0.156	CGCTGAGGTCATCG
Dmbx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	91	107	+	12.3553	3.71e-05	1	CCAAGAGGATTAAGGGT
Dmbx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	91	107	+	12.3553	3.71e-05	1	CCAAGAGGATTAAGGGT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	12	22	+	11.9593	3.71e-05	0.0169	GTCACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	12	22	+	11.9593	3.71e-05	0.0169	GTCACACCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	26	36	+	11.9593	3.71e-05	0.0169	GACCCACCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	32	42	-	11.9593	3.71e-05	0.0169	GACCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	49	59	-	11.9593	3.71e-05	0.0169	GTCACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	49	59	-	11.9593	3.71e-05	0.0169	GTCACACCCAC
FOXC2	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	15	26	+	12.1089	3.71e-05	1	TATGCCAACAAT
FOXC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	43	54	-	12.1089	3.71e-05	1	TAAGTCAACAGA
FOXC2	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	89	100	-	12.1089	3.71e-05	1	TATGCCAACAAT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	8	27	-	5.65138	3.71e-05	0.0515	CGCCACACCTCCAACCCACT
SP1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	3	13	+	12.1923	3.71e-05	0.0115	GCTCCGCCTAC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	4	14	+	12.1923	3.71e-05	0.0115	GCTCCGCCTAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	21	31	-	12.1923	3.71e-05	0.0115	GTTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	21	31	-	12.1923	3.71e-05	0.0115	GTTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	63	73	+	12.1923	3.71e-05	0.0115	GTTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	63	73	+	12.1923	3.71e-05	0.0115	GTTCCGCCCAC
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	80	92	-	11.1857	3.71e-05	0.729	ATCCCAGCTGTGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	11	-	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	50	59	+	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	50	59	+	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	50	59	+	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	62	71	-	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	62	71	-	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	99	108	+	12.0306	3.71e-05	0.0173	GGGGCGTGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	99	108	+	12.0306	3.71e-05	0.0173	GGGGCGTGGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	18	32	+	11.6552	3.71e-05	0.0101	CTCCCTCCCTTCCTC
SP2	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	54	68	+	11.6552	3.71e-05	0.0101	CTCCCTCCTTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	30	44	-	11.6552	3.71e-05	0.0101	GCTCCTCCTTCCCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	30	44	-	11.6552	3.71e-05	0.0101	GCTCCTCCTTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	30	44	-	11.6552	3.71e-05	0.0101	GCTCCTCCTTCCCTC
SP2	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	47	61	-	11.6552	3.71e-05	0.0101	CTCCCTCCTTCCCTC
KLF14	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	39	52	+	10.3276	3.71e-05	0.0289	TCCCCCGCCCCCAA
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	32	41	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	35	44	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	39	48	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	72	81	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	72	81	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	98	107	+	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	8	17	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	15	24	-	11.6972	3.71e-05	0.0499	TACCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	24	33	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	24	33	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	64	73	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	67	76	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	71	80	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	86	95	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	105	114	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	105	114	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	105	114	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	105	114	-	11.6972	3.71e-05	0.0499	CCCCCTCCAC
E2F4	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	16	26	-	12.3103	3.71e-05	0.0457	CAGCGGGAAGC
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	39	52	+	7.44898	3.71e-05	0.0696	GGGGGCAAGAGGAG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	62	75	-	7.44898	3.71e-05	0.0696	GGGGGCAAGAGGAG
SPIC	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	23	36	+	11.8451	3.71e-05	0.214	GGGAACCGGAAGTC
SPIC	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	47	60	+	11.8451	3.71e-05	0.214	AATAAAGGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	59	72	-	11.8451	3.71e-05	0.214	GAAAAGGGGAGGGA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	59	72	-	11.8451	3.71e-05	0.214	GAAAAGGGGAGGGA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	92	-	11.8451	3.71e-05	0.214	GGGAACCGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	92	-	11.8451	3.71e-05	0.214	GGGAACCGGAAGTC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	37	+	10.623	3.71e-05	0.365	GGCCCCAGGGGAAG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	+	12.1091	3.71e-05	0.0893	TCCCCGGAGGCT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	-	12.1091	3.71e-05	0.0893	TCCCCGGAGGCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	34	44	+	12.0606	3.71e-05	0.0469	AGGCCCACCCT
Klf1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	80	90	+	12.0606	3.71e-05	0.0469	AGGCCCACCCT
Klf1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	25	35	-	12.0606	3.71e-05	0.0469	AGGCCCACCCT
Klf1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	71	81	-	12.0606	3.71e-05	0.0469	AGGCCCACCCT
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	+	12.1552	3.71e-05	1	AACATATGCC
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	12.1552	3.71e-05	1	GGCATATGTT
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	12.1552	3.71e-05	1	GGCATATGTT
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	-	12.1552	3.71e-05	1	AACATATGCC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	19	28	-	12.3279	3.71e-05	0.207	AATCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	19	28	-	12.3279	3.71e-05	0.207	AATCACGTGG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	31	41	+	12.3878	3.71e-05	0.29	TCTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	57	67	+	12.3878	3.71e-05	0.29	TCTTCCTGGAA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	54	68	-	9.90164	3.71e-05	0.0518	GGCCCCACCCCCTGC
NFATC1	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	13	22	-	10.8374	3.71e-05	0.956	GTTTTCCATT
NFATC1	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	93	102	+	10.8374	3.71e-05	0.956	GTTTTCCATT
Rfx1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	9	22	-	11.3276	3.71e-05	0.198	GTCACCATGGGGAC
Rfx1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	93	106	+	11.3276	3.71e-05	0.198	GTCACCATGGGGAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	73	82	+	11.4286	3.71e-05	0.684	TTTGCGCAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	73	82	+	11.4286	3.71e-05	0.684	TTTGCGCAAC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	41	50	-	12.4242	3.71e-05	0.585	TACACGTGTG
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	41	50	-	12.4242	3.71e-05	0.585	TACACGTGTG
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	41	50	-	12.4242	3.71e-05	0.585	TACACGTGTG
TBX20	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	73	83	+	11.8333	3.71e-05	1	TAAGTGTGAAT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	-	11.4483	3.71e-05	0.0554	TCCCTCGCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	+	11.4483	3.71e-05	0.0554	CGCCCTTTGGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	-	11.4483	3.71e-05	0.0554	TGCCACAGGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	+	11.4483	3.71e-05	0.0554	GCCCTTGGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	+	11.4483	3.71e-05	0.0554	GCCCTTGGGGGCT
NFYA	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	2	19	+	10.5976	3.71e-05	0.129	GGGGCGTCCATTGGCCCC
Foxd3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	72	83	-	12.1957	3.71e-05	1	TAATGTTTACTT
Foxd3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	72	83	-	12.1957	3.71e-05	1	TAATGTTTACTT
HIC2	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	4	12	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	13	21	+	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	22	30	+	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	22	30	+	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	22	30	+	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	22	30	+	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	24	32	+	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	19	27	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	19	27	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	33	41	+	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	30	38	-	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	30	38	-	11.4182	3.72e-05	0.302	GTGCCCACA
HIC2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	42	50	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	54	62	+	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	53	61	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	77	85	-	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	88	96	+	11.4182	3.72e-05	0.302	GTGCCCGCG
HIC2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	94	102	-	11.4182	3.72e-05	0.302	GTGCCCGCG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	21	30	+	11.9836	3.72e-05	0.718	TGTGCGGGCG
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	21	30	+	11.9836	3.72e-05	0.718	TGTGCGGGCG
GCM2	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	88	97	+	11.9836	3.72e-05	0.718	TGTGCGGGCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	20	30	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	20	30	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	30	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	20	30	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	20	30	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	48	58	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	55	65	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	55	65	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	55	65	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	104	114	+	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	13	23	-	11.9512	3.72e-05	0.0169	CCCCCACCCCA
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	39	49	-	11.9512	3.72e-05	0.0169	CCCCCACCCCA
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	22	36	-	11.9615	3.72e-05	0.127	CCTCCTACCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	22	36	-	11.9615	3.72e-05	0.127	CCTCCTACCAATCAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	13	33	-	10.7959	3.72e-05	0.0142	AGTAGAGAAAGTGGAAGAGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	14	34	-	10.7959	3.72e-05	0.0142	GGGGAAGTTAGCAGAGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	15	35	-	10.7959	3.72e-05	0.0142	GGAGAAAGGTGACTGGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	16	36	+	10.7959	3.72e-05	0.0142	CGAGGTGAAGGGGCGGAGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	34	54	+	10.7959	3.72e-05	0.0142	AGGGGCGAGAGGGTGGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	52	72	+	10.7959	3.72e-05	0.0142	AGTAGAGAAAGTGGAAGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	80	100	+	10.7959	3.72e-05	0.0142	GGAGAAAGGTGACTGGGAGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	82	102	+	10.7959	3.72e-05	0.0142	AGTAGAGAAAGTGGAAGAGGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	62	81	-	5.6422	3.72e-05	0.0515	CCGCCCCCAACCCACCGCCG
Arid5a	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	98	111	-	11.8929	3.72e-05	1	GTAATATTAGTATC
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	18	28	+	12.3273	3.72e-05	0.169	TCTGACTCAGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	7	24	+	-11.0658	3.72e-05	0.037	GGAGGGGAGGATGGGGGT
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	11	21	+	11.6724	3.72e-05	0.0153	CACAAGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	32	42	-	11.6724	3.72e-05	0.0153	CCACCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	32	42	-	11.6724	3.72e-05	0.0153	CCACCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	32	42	-	11.6724	3.72e-05	0.0153	GGCACCCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	32	42	-	11.6724	3.72e-05	0.0153	CCACCGCCCCC
CREB3	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	34	47	-	11.0571	3.72e-05	0.236	GCGTCACGTGACCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	27	40	+	7.43878	3.72e-05	0.0696	GGGGCGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	28	41	-	7.43878	3.72e-05	0.0696	GGGGCGGGGGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	74	87	-	7.43878	3.72e-05	0.0696	GGGGCGGGGGGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	75	88	-	7.43878	3.72e-05	0.0696	GGGGCGGGGGGGGG
ZBTB33	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	18	32	-	11.5152	3.72e-05	0.0939	CTCTCGCGGCTGCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	83	97	+	11.5152	3.72e-05	0.0939	CTCTCGCGGCTGCGC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	83	97	+	11.5152	3.72e-05	0.0939	CTCTCGCGGCTGCGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	83	97	+	11.5152	3.72e-05	0.0939	CTCTCGCGGCTGCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	83	97	+	11.5152	3.72e-05	0.0939	CTCTCGCGGCTGCGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	14	28	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	14	28	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	26	40	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	26	40	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	26	40	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	26	40	+	9.64286	3.72e-05	0.101	CCCGCCCCGCCGCTC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	91	105	+	9.64286	3.72e-05	0.101	GGCTCCCCGCTGACC
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	90	101	-	11.8793	3.72e-05	0.365	CCGACCCCCTAG
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	78	92	+	10.9394	3.72e-05	0.298	TCACTTTCCCTACCC
BCL6B	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	28	44	-	-13.2286	3.72e-05	0.94	TGTCTTCCAGGACCTCA
E2F6	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	24	34	+	12.5	3.72e-05	0.0527	GAGAGGGAGGC
E2F6	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	52	62	+	12.5	3.72e-05	0.0527	GAGAGGGAGGC
E2F6	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	81	91	-	12.5	3.72e-05	0.0527	GAGAGGGAGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	95	105	+	12.5	3.72e-05	0.0527	GCGAGGGAGGA
USF1	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	6	16	+	12.1633	3.72e-05	0.147	GCCTCGTGACC
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	62	72	+	12.1633	3.72e-05	0.147	ACCACATGACT
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	+	12.3455	3.72e-05	0.0515	AGCCGCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	-	12.3455	3.72e-05	0.0515	AGCCGCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	-	12.3455	3.72e-05	0.0515	AGCCGCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	-	12.3455	3.72e-05	0.0515	AGCCGCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	-	12.3455	3.72e-05	0.0515	AGCCGCCGGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	68	78	+	11.4727	3.72e-05	0.0151	GCCGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	77	87	+	11.4727	3.72e-05	0.0151	GCCGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	77	87	+	11.4727	3.72e-05	0.0151	GCCGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	81	91	+	11.4727	3.72e-05	0.0151	GCCCAGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	24	34	-	11.4727	3.72e-05	0.0151	GCCCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	37	47	-	11.4727	3.72e-05	0.0151	GCCGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	37	47	-	11.4727	3.72e-05	0.0151	GCCGCTGCGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	99	110	-	10.6909	3.73e-05	0.0999	TGCCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	99	110	-	10.6909	3.73e-05	0.0999	TGCCCGGAAGCC
Crem	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	48	57	+	12.7377	3.73e-05	0.266	CATTACGTAA
ELK4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	36	46	-	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	39	49	-	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	88	98	-	12.2909	3.73e-05	0.0529	CTTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	11	21	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	11	21	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	17	27	+	12.2909	3.73e-05	0.0529	CTTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	17	27	+	12.2909	3.73e-05	0.0529	CTTCTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	66	76	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	69	79	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	69	79	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	69	79	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	69	79	+	12.2909	3.73e-05	0.0529	AGGCTTCCGGT
Myb	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	25	34	-	12.7705	3.73e-05	0.89	CAAACTGTCT
Myb	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	38	47	-	12.7705	3.73e-05	0.89	CAAACTGTCT
Myb	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	68	77	+	12.7705	3.73e-05	0.89	CAAACTGTCT
Myb	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	81	90	+	12.7705	3.73e-05	0.89	CAAACTGTCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	90	99	+	12.3	3.73e-05	0.182	ACCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	90	99	+	12.3	3.73e-05	0.182	ACCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	90	99	+	12.3	3.73e-05	0.182	ACCAGCTGCA
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	90	99	+	12.3	3.73e-05	0.182	ACCAGCTGCA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	15	29	-	11.4727	3.73e-05	0.108	CACTCCCTGTGGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	15	29	-	11.4727	3.73e-05	0.108	CACTCCCTGTGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	15	29	-	11.4727	3.73e-05	0.108	CACTCCCTGTGGGGC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	31	45	-	11.4727	3.73e-05	0.108	CCCTCCCCGCAGAGC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	+	12.1	3.73e-05	0.744	ATTGCGTAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	+	12.1	3.73e-05	0.744	ATTGCGTAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	+	12.1	3.73e-05	0.744	ATTGCGTAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	+	12.1	3.73e-05	0.744	ATTGCGTAAC
CEBPB	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	-	12.1	3.73e-05	0.744	ATTGCGTAAC
CEBPB	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	-	12.1	3.73e-05	0.744	ATTGCGTAAC
ETV6	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	23	32	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	27	36	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	27	36	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	28	37	+	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	28	37	+	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	33	42	+	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	58	67	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	58	67	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	59	68	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	59	68	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	59	68	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	59	68	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	66	75	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	66	75	+	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE__Lincrna.noflip.NA__chr6:58287638..58287752,-__753.1.0.0	37	46	-	12.2885	3.73e-05	0.0889	GGAGGAAGTA
ETV6	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	49	-	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	56	-	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	82	-	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	82	-	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	87	-	12.2885	3.73e-05	0.0889	TGCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	88	-	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	88	-	12.2885	3.73e-05	0.0889	ACCGGAAGTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	92	101	-	12.2885	3.73e-05	0.0889	GGAGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.0.0	92	101	-	12.2885	3.73e-05	0.0889	GGAGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	92	101	-	12.2885	3.73e-05	0.0889	GGAGGAAGTA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	71	84	-	5.10909	3.73e-05	0.156	CAATTGAGGAAGCT
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	71	84	-	5.10909	3.73e-05	0.156	CAATTGAGGAAGCT
IRF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	90	107	+	7.22018	3.73e-05	0.611	CAAGAATGAAAGGCAACC
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	90	107	+	7.22018	3.73e-05	0.611	CAAGAATGAAAGGCAACC
Zfx	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	6	19	+	12.0606	3.73e-05	0.0471	CGAGCAGAGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	66	79	+	12.0606	3.73e-05	0.0471	GCGGCCCCAGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	67	80	+	12.0606	3.73e-05	0.0471	GCGGGAGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	67	80	+	12.0606	3.73e-05	0.0471	GCGGGAGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	67	80	+	12.0606	3.73e-05	0.0471	GCGGGAGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	67	80	+	12.0606	3.73e-05	0.0471	GCGGGAGGGGCCTG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	11.8793	3.73e-05	0.16	GTCACGTGGC
HEY2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	11.8793	3.73e-05	0.16	GTCACGTGGC
EGR1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	6	19	+	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	11	24	+	11.5	3.73e-05	0.0175	GCCTCGCCGCCGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	32	45	+	11.5	3.73e-05	0.0175	GCCCCTCCGCCAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	91	104	-	11.5	3.73e-05	0.0175	GCCTCGCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	96	109	-	11.5	3.73e-05	0.0175	GGCACACCCACACC
Hmx2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	46	62	-	11.7895	3.73e-05	1	CTCCGCACTTAAAGCAT
ZNF143	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	41	56	+	3.87931	3.73e-05	0.299	ATCCCAGCATCCTCTG
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	-	12.2182	3.73e-05	0.0682	GGCCGCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	-	12.2182	3.73e-05	0.0682	TGCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	-	12.2182	3.73e-05	0.0682	TGCCTCCGGCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	53	72	+	5.63303	3.73e-05	0.0515	CCCCCCCACCCCACCCCGCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	53	72	+	5.63303	3.73e-05	0.0515	CCCCCCCACCCCACCCCGCT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	53	72	+	5.63303	3.73e-05	0.0515	CCCCCCCACCCCACCCCGCT
GATA1::TAL1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	58	75	+	12	3.73e-05	0.915	ATTATCGGCCGGGTCCAG
GATA1::TAL1	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	41	58	-	12	3.73e-05	0.915	ATTATCGGCCGGGTCCAG
PKNOX1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	+	4.7551	3.73e-05	1	TGGCTGCTGTCA
HOXC11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	12	22	-	12.431	3.73e-05	1	TGTCGTAAACC
HOXC11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	93	103	+	12.431	3.73e-05	1	TGTCGTAAACC
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	54	68	-	11.5273	3.73e-05	0.308	GGGAAGGGAGAGGAA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	54	68	-	11.5273	3.73e-05	0.308	GGGAAGGGAGAGGAA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	78	92	-	11.5273	3.73e-05	0.308	TAAAAGCGAAAGGAC
HSF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	60	72	+	10.4364	3.73e-05	1	CTCGGGAACGTTC
HSF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	60	72	+	10.4364	3.73e-05	1	CTCGGGAACGTTC
KLF13	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	18	35	+	6.65517	3.73e-05	0.218	TGACCACGCCCACGGCCC
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	13	27	-	11.0455	3.73e-05	0.263	GTTCCTGACTCGGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	88	102	+	11.0455	3.73e-05	0.263	GTTCCTGACTCGGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	88	102	+	11.0455	3.73e-05	0.263	GTTCCTGACTCGGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	88	102	+	11.0455	3.73e-05	0.263	GTTCCTGACTCGGCA
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	23	39	+	12.0658	3.73e-05	1	GGGAAGCTGTTAACCAT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	-	11.7049	3.73e-05	0.0586	CGCCGCGAGGGCC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	+	11.7049	3.73e-05	0.0586	CGCCGCGAGGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	-	11.7049	3.73e-05	0.0586	CGCCGCGAGGGCC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	+	11.7049	3.73e-05	0.0586	CGCCGCGAGGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	+	11.5738	3.73e-05	0.0641	CGCCCCACAGGCG
EHF	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	16	27	+	11.5082	3.73e-05	0.118	CGCGCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	41	52	+	11.5082	3.73e-05	0.118	AGCCAGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	41	52	+	11.5082	3.73e-05	0.118	AGCCAGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	50	61	+	11.5082	3.73e-05	0.118	CGCGCGGAAGTG
EHF	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	54	65	-	11.5082	3.73e-05	0.118	CGCGCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	69	80	+	11.5082	3.73e-05	0.118	AGCCAGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	69	80	+	11.5082	3.73e-05	0.118	AGCCAGGAAGTG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	88	99	-	11.5082	3.73e-05	0.118	CGCGCGGAAGTG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	14	23	+	11.5122	3.73e-05	0.488	CCAATCTCAG
Gfi1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	45	54	-	11.5122	3.73e-05	0.488	CCAATCTCAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	77	86	-	11.5122	3.73e-05	0.488	CCAATCTCAG
Creb3l2	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	70	78	-	12.6742	3.73e-05	0.191	GCCACGTCG
PLAG1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	21	34	-	7.42857	3.73e-05	0.0696	GTGGCCCCGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	81	94	+	7.42857	3.73e-05	0.0696	GTGGCCCCGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	81	94	+	7.42857	3.73e-05	0.0696	GTGGCCCCGAGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	60	70	-	12.8776	3.73e-05	0.137	AACAGCTGATC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	60	70	-	12.8776	3.73e-05	0.137	AACAGCTGATC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	54	67	+	10.3103	3.73e-05	0.0289	TGCCCCTCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	54	67	+	10.3103	3.73e-05	0.0289	TGCCCCTCCCCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	48	61	-	10.3103	3.73e-05	0.0289	TGCCCCTCCCCCCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	-	12.0408	3.73e-05	0.0857	CGCCTGCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	-	12.0408	3.73e-05	0.0857	CGCCTGCGGGGA
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	11	23	-	11.83	3.73e-05	1	CGTATGCAAATGA
NFYA	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	63	80	+	10.5854	3.73e-05	0.129	GGCGGGCTCATTGGCTTC
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	36	48	+	11.898	3.73e-05	0.301	GCTGTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	36	48	+	11.898	3.73e-05	0.301	GCTGTGACGTCAT
JUN	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	99	111	+	11.898	3.73e-05	0.301	GCTGTGACGTCAT
JUN	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	4	16	-	11.898	3.73e-05	0.301	GCTGTGACGTCAT
JUN	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	67	79	-	11.898	3.73e-05	0.301	GCTGTGACGTCAT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	39	56	+	-11.0789	3.74e-05	0.037	GGAAGTGGGGAACCGAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	84	101	-	-11.0789	3.74e-05	0.037	GAGAGGGGGGAAAAAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	84	101	-	-11.0789	3.74e-05	0.037	GAGAGGGGGAAAAGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	84	101	-	-11.0789	3.74e-05	0.037	GAGAGGGGGAAAAGAAGG
CTCF	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	30	48	+	10.0492	3.74e-05	0.108	ATGACTGTAGGGGACACCG
CTCF	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	67	85	-	10.0492	3.74e-05	0.108	ATGACTGTAGGGGACACCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	32	48	+	5.94545	3.74e-05	0.0224	CCCGCCCCGCCCCGAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	32	48	+	5.94545	3.74e-05	0.0224	CCCGCCCCGCCCCGAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	32	48	+	5.94545	3.74e-05	0.0224	CCCGCCCCGCCCCGAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	32	48	+	5.94545	3.74e-05	0.0224	CCCGCCCCGCCCCGAGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	48	62	+	9.88525	3.74e-05	0.052	GGGCACACCCACGTA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	67	81	-	9.88525	3.74e-05	0.052	GGGCACACCCACGTA
ELK3	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.2241	3.74e-05	0.104	GCCGGATGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.2241	3.74e-05	0.104	GCCGGATGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.2241	3.74e-05	0.104	GCCGGATGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.2241	3.74e-05	0.104	GCCGGATGTG
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	60	72	-	11.381	3.74e-05	0.475	ACAGGACAAGTGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	60	72	-	11.381	3.74e-05	0.475	ACAGGACAAGTGC
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	30	46	-	11.0408	3.74e-05	0.338	GGGTCACTGGGATGGGA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	30	46	-	11.0408	3.74e-05	0.338	GGGTCACTGGGATGGGA
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	91	102	+	11.8333	3.74e-05	0.109	CGAGGTCCCCGG
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	91	102	+	11.8333	3.74e-05	0.109	CGAGGTCCCCGG
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	95	108	+	12.3793	3.74e-05	0.238	TTTCAGAGAAATGC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	8	18	+	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	8	18	+	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	8	18	+	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	8	18	+	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	8	18	+	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	97	107	-	12.2931	3.74e-05	0.0457	CGGCGCGAGAG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	57	68	-	10.6727	3.74e-05	0.0999	GCCACGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	57	68	-	10.6727	3.74e-05	0.0999	GCCACGGAAGTG
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	9	17	-	11.8496	3.74e-05	1	TATGCAAAA
POU5F1B	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	13	21	-	11.8496	3.74e-05	1	TATGCAAAA
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	33	41	-	11.8496	3.74e-05	1	TATGCAAAA
EGR4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	10	25	-	11.3455	3.74e-05	0.0374	CCACGCCCCCTCCCCT
EGR4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	39	54	-	11.3455	3.74e-05	0.0374	CCACGCCCCCTCCCCT
EGR4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	61	76	+	11.3455	3.74e-05	0.0374	CCACGCCCCCTCCCCT
EGR4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	90	105	+	11.3455	3.74e-05	0.0374	CCACGCCCCCTCCCCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	8	27	-	5.62385	3.74e-05	0.0516	CCCCCGACCCACCCCTTCCT
Myc	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	40	-	12.9091	3.74e-05	0.364	CCACGTGCCG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	40	-	12.9091	3.74e-05	0.364	CCACGTGCCG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	40	-	12.9091	3.74e-05	0.364	CCACGTGCCG
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	17	-	12.0192	3.74e-05	1	AGTGTAAACAA
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	17	-	12.0192	3.74e-05	1	AGTGTAAACAA
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	62	72	+	12.0192	3.74e-05	1	AGTGTAAACAA
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	62	72	+	12.0192	3.74e-05	1	AGTGTAAACAA
TBR1	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	61	70	-	12.1277	3.74e-05	0.898	GGGTGTGAAG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	18	29	-	11.5345	3.74e-05	0.33	GGGACCACAGAG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	18	29	-	11.5345	3.74e-05	0.33	GGGACCACAGAG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	18	29	-	11.5345	3.74e-05	0.33	GGGACCACAGAG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	18	29	-	11.5345	3.74e-05	0.33	GGGACCACAGAG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	18	29	-	11.5345	3.74e-05	0.33	GGGACCACAGAG
ELF3	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	12	24	-	9.89655	3.74e-05	0.134	AACCCGGAAACGC
RELA	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	29	38	+	11.8265	3.74e-05	0.213	TGGGAATTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	68	82	+	11.6379	3.74e-05	0.0101	CCTCCTCCTCCTCCA
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	76	90	+	11.6379	3.74e-05	0.0101	CCTCCTCCTCCTCCA
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	25	39	-	11.6379	3.74e-05	0.0101	CCTCCTCCTCCTCCA
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	33	47	-	11.6379	3.74e-05	0.0101	CCTCCTCCTCCTCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	43	57	-	11.6379	3.74e-05	0.0101	GCACCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	43	57	-	11.6379	3.74e-05	0.0101	GCACCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	43	57	-	11.6379	3.74e-05	0.0101	GCACCTCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	43	57	-	11.6379	3.74e-05	0.0101	GCACCTCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	43	57	-	11.6379	3.74e-05	0.0101	GCACCTCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	51	65	-	11.6379	3.74e-05	0.0101	CGCCCTCCTCCTTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	51	65	-	11.6379	3.74e-05	0.0101	CGCCCTCCTCCTTTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	51	65	-	11.6379	3.74e-05	0.0101	CGCCCTCCTCCTTTC
SP2	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	53	67	-	11.6379	3.74e-05	0.0101	GCCGCGCCTCCTGGC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	46	56	-	12.1731	3.74e-05	0.0116	ATCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	46	56	-	12.1731	3.74e-05	0.0116	ATCCCTCCCCT
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	80	96	-	5.14754	3.74e-05	0.563	GGGTCCCAGCGAGGTCT
RARA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	67	84	-	-6.5303	3.74e-05	1	AAGGGAGTTAGTTCAGTG
RARA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	67	84	-	-6.5303	3.74e-05	1	AAGGGAGTTAGTTCAGTG
RARA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	67	84	-	-6.5303	3.74e-05	1	AAGGGAGTTAGTTCAGTG
RARA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	67	84	-	-6.5303	3.74e-05	1	AAGGGAGTTAGTTCAGTG
RARA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	67	84	-	-6.5303	3.74e-05	1	AAGGGAGTTAGTTCAGTG
SP8	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	17	28	-	11.8289	3.74e-05	0.0262	CCTCCGCCCCCT
SP8	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	17	28	-	11.8289	3.74e-05	0.0262	CCTCCGCCCCCT
SP8	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	17	28	-	11.8289	3.74e-05	0.0262	CCTCCGCCCCCT
SP8	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	99	+	11.8289	3.74e-05	0.0262	CCTCCGCCCCCT
IRF9	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	17	31	-	-0.0181818	3.74e-05	0.506	AAGTAAAGTGAAAGC
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	29	43	-	-0.0181818	3.74e-05	0.506	AAGTAAAGTGAAAGC
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	29	43	-	-0.0181818	3.74e-05	0.506	AAGTAAAGTGAAAGC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	35	48	-	8.10638	3.74e-05	0.0959	TGCCACCCGCCGCC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	35	48	-	8.10638	3.74e-05	0.0959	TGCCACCCGCCGCC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	87	97	+	12.1034	3.74e-05	0.227	GCCTGTGGCTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	87	97	+	12.1034	3.74e-05	0.227	GCCTGTGGCTG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	-	12.2308	3.75e-05	0.0703	CGCCGGAGGCC
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	-	12.2308	3.75e-05	0.0703	CGCCGGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	-	12.2308	3.75e-05	0.0703	AGCCTAGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	-	12.2308	3.75e-05	0.0703	AGCCTAGGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	-	12.2308	3.75e-05	0.0703	CGCCGGAGGCC
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	+	12.2308	3.75e-05	0.0703	CGCCGGAGGCC
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	+	12.2308	3.75e-05	0.0703	CGCCGGAGGCC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	12	21	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	13	22	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	27	36	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	27	36	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	47	56	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	57	66	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	57	66	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	59	68	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	64	73	+	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	59	68	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	59	68	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	64	73	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	67	76	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	67	76	-	11.6869	3.75e-05	0.165	GGAGGGGAGA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	43	54	+	12.1273	3.75e-05	0.0548	TCCCTCAGGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	39	50	-	12.1273	3.75e-05	0.0548	TCCCTCAGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	-	11.431	3.75e-05	0.0554	GGCCTCTGGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	-	11.431	3.75e-05	0.0554	GGCCTCTGGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	-	11.431	3.75e-05	0.0554	GGCCTCTGGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	-	11.431	3.75e-05	0.0554	GGCCTCTGGGGGA
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	30	44	+	10.1475	3.75e-05	0.388	ATGAGTCATCAGGCA
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	21	39	-	11.629	3.75e-05	0.671	TGAACTGGTGTGGCATCAT
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	8	19	+	11.9429	3.75e-05	0.217	CACGCCCACCCC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	11.7636	3.75e-05	0.0918	ACCGGAAGGA
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	-	5.27869	3.75e-05	0.598	GGACGGCTGTCA
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	-	5.27869	3.75e-05	0.598	GGACGGCTGTCA
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	65	82	-	0.844828	3.75e-05	0.677	AGCAAGTCACAACACTTC
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	65	82	-	0.844828	3.75e-05	0.677	AGCAAGTCACAACACTTC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	55	65	-	12.4286	3.75e-05	0.111	CTCAGGTGACT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	55	65	-	12.4286	3.75e-05	0.111	CTCAGGTGACT
FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	12.1489	3.75e-05	0.0992	ACCGGAAGGA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	12.2414	3.75e-05	0.104	GCCGGAAATG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	12.2414	3.75e-05	0.104	GCCGGAAATG
ETV4	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	12.2414	3.75e-05	0.104	GCCGGAAATG
ETV4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	12.2414	3.75e-05	0.104	GCCGGAAATG
ETV4	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	12.2414	3.75e-05	0.104	GCCGGAAATG
FOXF2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	54	67	-	12.3222	3.75e-05	1	GGTAAGTAAACAAC
MTF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	95	108	+	7.93902	3.75e-05	0.5	TGTGCGGACGGTGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	11.7755	3.75e-05	0.107	GACACGTGAT
TFE3	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	+	11.7755	3.75e-05	0.107	ACCACGTGAA
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	88	97	+	12.9231	3.75e-05	0.404	TGCACCTGTG
TCF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	88	97	+	12.9231	3.75e-05	0.404	TGCACCTGTG
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	+	12.5106	3.75e-05	0.211	GGTGAGTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	-	12.5106	3.75e-05	0.211	GGTGAGTCACA
BATF3	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	85	98	+	3.24242	3.75e-05	0.156	CCGTGACGTCAGAG
BATF3	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	17	30	-	3.24242	3.75e-05	0.156	CCGTGACGTCAGAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	20	30	+	12.5306	3.75e-05	0.186	GTATGAGTCAC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	24	33	+	12.7879	3.75e-05	0.213	ATCACGTGTA
Gabpa	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	43	53	+	12.1311	3.75e-05	0.0491	CAGGAAGCGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	61	71	+	12.1311	3.75e-05	0.0491	CAGGAAGCGGA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	61	71	+	12.1311	3.75e-05	0.0491	CAGGAAGCGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	84	94	+	12.1311	3.75e-05	0.0491	CAGGAAGCGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	84	94	+	12.1311	3.75e-05	0.0491	CAGGAAGCGGA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	92	106	-	9.02632	3.75e-05	0.224	ATGCTGACTCACCTG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	92	106	-	9.02632	3.75e-05	0.224	ATGCTGACTCACCTG
Vdr	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	14	29	+	6.04918	3.76e-05	0.833	GAGTGCACGGGGGCCG
Vdr	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	86	101	-	6.04918	3.76e-05	0.833	GAGTGCACGGGGGCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	28	44	-	5.92727	3.76e-05	0.0224	TACGCCCCGGCCACGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	28	44	-	5.92727	3.76e-05	0.0224	TACGCCCCGGCCACGCC
SP3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	19	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	26	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	26	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	28	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	35	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	35	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	38	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	81	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	99	109	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	110	+	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	5	15	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	5	15	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	6	16	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	13	23	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	20	30	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	20	30	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	22	32	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	24	34	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	24	34	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	24	34	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	31	41	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	34	44	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	34	44	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	34	44	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	34	44	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	87	97	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	96	106	-	11.9106	3.76e-05	0.0169	GGCCCGCCCCC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	84	-	11.4918	3.76e-05	0.118	ACGCCGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	84	-	11.4918	3.76e-05	0.118	ACGCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	84	-	11.4918	3.76e-05	0.118	ACGCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	84	-	11.4918	3.76e-05	0.118	ACGCCGGAAGTT
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	25	37	+	11.1429	3.76e-05	0.729	TGGCCAGATGTAC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	88	100	-	11.1429	3.76e-05	0.729	TGGCCAGATGTAC
POU3F3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	17	29	+	11.82	3.76e-05	1	AGTATGTAAATCT
POU3F3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	17	29	+	11.82	3.76e-05	1	AGTATGTAAATCT
Zfx	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	35	48	-	12.0455	3.76e-05	0.0474	CCAGGCTTGGCCTC
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	88	98	+	12.3469	3.76e-05	0.29	CTTTCCCAGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	88	98	+	12.3469	3.76e-05	0.29	CTTTCCCAGAG
CREB3L1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	97	110	+	10.0455	3.76e-05	0.253	TCTCCACGTAATCG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	5	18	-	10.0455	3.76e-05	0.253	TCTCCACGTAATCG
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	-	12.0862	3.76e-05	1	GACATATGCT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	29	49	-	10.7755	3.76e-05	0.0143	AGGGGAACGCGGGGGAGGGCA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	29	49	-	10.7755	3.76e-05	0.0143	AGGGGAACGCGGGGGAGGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	29	49	-	10.7755	3.76e-05	0.0143	AGGGGAACGCGGGGGAGGGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	41	61	-	10.7755	3.76e-05	0.0143	AAAGGAGGAAGGCGGGTGCGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	66	86	-	10.7755	3.76e-05	0.0143	AGGGGATGGCGGGGTGGGGCC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	29	49	+	10.7755	3.76e-05	0.0143	AGGGGATGGCGGGGTGGGGCC
SP1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	17	27	+	12.1538	3.76e-05	0.0117	TCTCCACCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	72	82	-	12.1538	3.76e-05	0.0117	TCTCCACCCCT
SP1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	88	98	-	12.1538	3.76e-05	0.0117	TCTCCACCCCT
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	24	37	+	12.3846	3.76e-05	0.199	GGGTGGTGATTCAG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	12.2545	3.76e-05	0.102	ACCGGAAGAG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	12.2545	3.76e-05	0.102	ACCGGAAGAG
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	12	21	-	12.3265	3.76e-05	0.0168	CCCACACCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	52	61	+	12.3265	3.76e-05	0.0168	CCCACACCCT
REST	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	77	97	+	6.71429	3.76e-05	0.208	TTCAGAACTGCAGATAGTACA
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	17	26	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	17	26	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	17	26	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	17	26	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	25	34	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	17	26	-	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	89	98	+	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	81	90	-	12.0204	3.76e-05	0.0173	CGGGTGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	89	98	-	12.0204	3.76e-05	0.0173	CGGGTGTGGC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	39	50	-	5.01724	3.76e-05	0.296	AGGCACGTGTGT
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	39	50	-	5.01724	3.76e-05	0.296	AGGCACGTGTGT
GLIS2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	42	55	-	9.70492	3.76e-05	0.177	TCCCCCCCTCAAGC
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	60	73	+	9.70492	3.76e-05	0.177	TCCCCCCCTCAAGC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	60	73	+	9.70492	3.76e-05	0.177	TCCCCCCCTCAAGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	11	24	+	10.2931	3.76e-05	0.0289	CCCCCCGCCCCCCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	13	26	-	10.2931	3.76e-05	0.0289	CCCCCCGCCCCCCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	65	78	+	10.2931	3.76e-05	0.0289	CCCCCCGCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	64	77	-	10.2931	3.76e-05	0.0289	CCCCCCGCCCCCCA
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	-	11.5574	3.76e-05	0.0641	CGCCTGCAGGGCG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	+	11.5574	3.76e-05	0.0641	CGCCTGCAGGGCG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	6	20	+	9.61429	3.76e-05	0.101	CGCACCCCGGCGCGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	95	109	-	9.61429	3.76e-05	0.101	CGCACCCCGGCGCGC
NFE2	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	-	7.67347	3.76e-05	0.248	AATGACTCAGC
HNF4G	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	41	55	+	11.7885	3.76e-05	0.335	AGTGTGCAAAGCCCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	60	74	-	11.7885	3.76e-05	0.335	AGTGTGCAAAGCCCA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	60	74	-	11.7885	3.76e-05	0.335	AGTGTGCAAAGCCCA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	+	12.0306	3.76e-05	0.0857	TGCCCCGCGGCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	-	12.0306	3.76e-05	0.0857	TGCCCCGCGGCT
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	6	24	-	10.0328	3.76e-05	0.108	AGGCCGGCAGGCGGAGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	6	24	-	10.0328	3.76e-05	0.108	AGGCCGGCAGGCGGAGGAG
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	+	11.6885	3.76e-05	0.0586	CGCCCCCACGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	+	11.6885	3.76e-05	0.0586	GGCCCGCTGGGGA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	+	11.6885	3.76e-05	0.0586	CGCCCCCACGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	+	11.6885	3.76e-05	0.0586	CGCCCCCACGGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	-	11.6885	3.76e-05	0.0586	CGCCCCCACGGCG
SPI1	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	101	114	+	5.07273	3.76e-05	0.156	TGAAAGCCGAAGTT
SPI1	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	1	14	-	5.07273	3.76e-05	0.156	TGAAAGCCGAAGTT
EGR1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	26	39	+	11.4808	3.76e-05	0.0176	TGGCCACCCACACA
EGR1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	24	37	-	11.4808	3.76e-05	0.0176	CTCCTTCCCCCTCG
EGR1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	29	42	-	11.4808	3.76e-05	0.0176	GTCCCGCCTCTGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	55	68	+	11.4808	3.76e-05	0.0176	TGGCCACCCACACA
EGR1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	47	60	-	11.4808	3.76e-05	0.0176	TGGCCACCCACACA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	73	86	+	11.4808	3.76e-05	0.0176	GTCCCGCCTCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	73	86	+	11.4808	3.76e-05	0.0176	GTCCCGCCTCTGCC
EGR1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	78	91	+	11.4808	3.76e-05	0.0176	CTCCTTCCCCCTCG
EGR1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	76	89	-	11.4808	3.76e-05	0.0176	TGGCCACCCACACA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	96	109	-	11.4808	3.76e-05	0.0176	CCAACTCCCCCGTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	96	109	-	11.4808	3.76e-05	0.0176	CCAACTCCCCCGTC
HLTF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	70	79	-	8.80488	3.76e-05	1	GACCTTATCG
HLTF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	70	79	-	8.80488	3.76e-05	1	GACCTTATCG
SP8	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	10	21	-	11.8158	3.77e-05	0.0263	CCCCCGCCCCAT
Ar	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	2	18	+	8.37931	3.77e-05	0.882	GGGCCCAGGCTGTGCCC
Ar	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	2	18	+	8.37931	3.77e-05	0.882	GGGCCCAGGCTGTGCCC
Ar	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	5	21	-	8.37931	3.77e-05	0.882	GGGCCCAGGCTGTGCCC
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	31	48	+	-11.1053	3.77e-05	0.0371	GAGAGAGAGTGAGGTAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	67	84	-	-11.1053	3.77e-05	0.0371	GAGAGAGAGTGAGGTAGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	75	92	-	-11.1053	3.77e-05	0.0371	GGAGGTGGGAGAGGAAGT
NR2C2	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	22	36	-	10.7	3.77e-05	0.111	GGGGGGCAGGAGCCA
NR2C2	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	50	64	+	10.7	3.77e-05	0.111	CCGGGTCTGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	51	65	-	10.7	3.77e-05	0.111	CCGGGTCTGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	79	93	+	10.7	3.77e-05	0.111	GGGGGGCAGGAGCCA
MEF2D	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	50	61	+	8.49091	3.77e-05	0.805	GCTATAAATACT
MEF2D	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	54	65	-	8.49091	3.77e-05	0.805	GCTATAAATACT
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	92	101	-	12.4382	3.77e-05	0.871	GTGGGGTGAA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	+	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	+	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	46	57	+	12.0909	3.77e-05	0.0893	AGCCCTGAGCCA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	+	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	-	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	-	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	-	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	-	12.0909	3.77e-05	0.0893	CGGCCGGGGGCA
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	58	69	-	12.0909	3.77e-05	0.0893	AGCCCTGAGCCA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	38	50	-	4.44898	3.77e-05	0.233	AGGGCGTCCCCCT
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	29	39	+	12.4545	3.77e-05	0.158	ACATGACTCAC
INSM1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	19	30	-	11.4898	3.77e-05	0.158	TTGCTGGGGCCG
HEY2	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	+	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	-	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	-	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	-	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	-	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	-	11.8276	3.77e-05	0.16	GGCACGCGCG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	-	11.8276	3.77e-05	0.16	GGCACGCGCG
USF1	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	39	+	12.1429	3.77e-05	0.148	GTCACATGACT
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	2	16	+	11.6207	3.77e-05	0.0102	AGCCCTCCCTCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	51	65	+	11.6207	3.77e-05	0.0102	TTTCCTCCTCTCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	51	65	+	11.6207	3.77e-05	0.0102	TTTCCTCCTCTCCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	77	91	-	11.6207	3.77e-05	0.0102	TCCGCGCCCCCCGCC
SP2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	86	100	-	11.6207	3.77e-05	0.0102	CTTCCGCCTTCCACC
ZIC1	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	7	20	+	8.08511	3.77e-05	0.0959	GGCCGCCCGGCGTG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	13	26	+	8.08511	3.77e-05	0.0959	TGCCACCCGCAGTC
EMX1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	21	30	-	10.7434	3.77e-05	1	ACTAATGAGC
EMX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	85	94	+	10.7434	3.77e-05	1	ACTAATGAGC
EMX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	85	94	+	10.7434	3.77e-05	1	ACTAATGAGC
EMX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	85	94	+	10.7434	3.77e-05	1	ACTAATGAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	21	40	-	5.59633	3.77e-05	0.0518	CCCCCCACCGCCCCGCGTCA
IRF9	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	21	35	+	-0.0545455	3.77e-05	0.506	AAGGAAACCGGAAGT
IRF9	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	80	94	-	-0.0545455	3.77e-05	0.506	AAGGAAACCGGAAGT
YY2	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	94	104	-	12.1818	3.77e-05	0.269	GCCCGCCATGG
RXRB	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	4	17	-	2.96364	3.78e-05	0.47	GGGGTCAGAGGAGA
RXRB	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	98	111	+	2.96364	3.78e-05	0.47	GGGGTCAGAGGAGA
SP4	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	11	27	-	5.90909	3.78e-05	0.0224	GGAGTCCCGCCCCCTGA
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	31	47	+	5.90909	3.78e-05	0.0224	GGAGTCCCGCCCCCTGA
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	31	47	+	5.90909	3.78e-05	0.0224	GGAGTCCCGCCCCCTGA
SP4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	34	50	+	5.90909	3.78e-05	0.0224	CTAGCTGCGCCCCCCGG
SP4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	45	61	+	5.90909	3.78e-05	0.0224	GCGGCCACTCCCTCCCG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	54	70	-	5.90909	3.78e-05	0.0224	GCGGCCACTCCCTCCCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	54	70	-	5.90909	3.78e-05	0.0224	GCGGCCACTCCCTCCCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	54	70	-	5.90909	3.78e-05	0.0224	GCGGCCACTCCCTCCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	54	70	-	5.90909	3.78e-05	0.0224	GCGGCCACTCCCTCCCG
SP4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	65	81	-	5.90909	3.78e-05	0.0224	CTAGCTGCGCCCCCCGG
SP4	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	68	84	-	5.90909	3.78e-05	0.0224	GGAGTCCCGCCCCCTGA
SP4	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	88	104	+	5.90909	3.78e-05	0.0224	GGAGTCCCGCCCCCTGA
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	73	86	-	7.33673	3.78e-05	0.365	TCGCCACACGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	29	42	+	7.33673	3.78e-05	0.365	TCGCCACACGCCAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	29	42	+	7.33673	3.78e-05	0.365	TCGCCACACGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	29	42	+	7.33673	3.78e-05	0.365	TCGCCACACGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	29	42	+	7.33673	3.78e-05	0.365	TCGCCACACGCCAA
Rarg(var.2)	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	33	49	+	-2.94545	3.78e-05	1	AGCGGCAAGGGCGGTCA
Rarg(var.2)	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	66	82	-	-2.94545	3.78e-05	1	AGCGGCAAGGGCGGTCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	27	37	-	12.3273	3.78e-05	0.0515	CGCCCCAAGCC
LEF1	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	53	67	-	10.129	3.78e-05	1	GAGGATCAATGGGAA
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	26	41	+	3.82759	3.78e-05	0.299	TTCCCGCAGTGCTCAG
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	26	41	+	3.82759	3.78e-05	0.299	TTCCCGCAGTGCTCAG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	26	41	+	3.82759	3.78e-05	0.299	TTCCCGCAGTGCTCAG
ZNF143	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	26	41	+	3.82759	3.78e-05	0.299	TTCCCGCAGTGCTCAG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	41	56	+	11.3273	3.78e-05	0.0374	GCCCGCCCGCCCCTCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	60	75	-	11.3273	3.78e-05	0.0374	CCCCGCCCCCGGGAAC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	60	75	-	11.3273	3.78e-05	0.0374	CCCCGCCCCCGGGAAC
EGR4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	89	104	+	11.3273	3.78e-05	0.0374	CCGCGCCCCCGCCCGC
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	30	43	-	5.78788	3.78e-05	0.379	GACCCCCTTCGCTG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	30	43	-	5.78788	3.78e-05	0.379	GACCCCCTTCGCTG
Esrrg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	56	65	-	12.102	3.78e-05	0.8	TCGAGGTCAT
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	56	65	-	12.102	3.78e-05	0.8	TCGAGGTCAT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.9859	3.78e-05	0.105	CCCGGAAATG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.9859	3.78e-05	0.105	CCCGGAAATG
Stat4	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	64	77	-	12.3621	3.78e-05	0.239	CTGCTGGGAACCAG
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	33	46	+	10.0303	3.78e-05	0.253	TGGCCACGTGACCC
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	47	60	-	10.0303	3.78e-05	0.253	TGGCCACGTGACCC
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	26	37	+	10.4	3.78e-05	0.173	CCTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	26	37	+	10.4	3.78e-05	0.173	CCTGACGTCAGC
Creb5	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	33	44	+	10.4	3.78e-05	0.173	CCTGACGTCAGC
Creb5	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	71	82	+	10.4	3.78e-05	0.173	CCTGACGTCAGC
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	93	104	+	10.4	3.78e-05	0.173	CCTGACGTCAGC
Creb5	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	18	29	-	10.4	3.78e-05	0.173	CCTGACGTCAGC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	14	-	12.8689	3.78e-05	0.389	CACACCTGCT
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	14	-	12.8689	3.78e-05	0.389	CACACCTGCT
ID4	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	19	-	12.8689	3.78e-05	0.389	CACACCTGTT
ID4	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	105	+	12.8689	3.78e-05	0.389	CACACCTGTT
Myod1	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	108	+	12.8367	3.78e-05	0.143	AGCAGCTGTGTGC
JUN	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	61	73	-	11.8776	3.78e-05	0.301	AGGGTGAGGTCAG
NFATC3	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	99	108	-	11.4545	3.78e-05	0.908	TTTTTCCACC
NFATC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	7	16	+	11.4545	3.78e-05	0.908	TTTTTCCACC
NFATC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	7	16	+	11.4545	3.78e-05	0.908	TTTTTCCACC
TP53	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	+	8.14286	3.78e-05	0.979	GACGAGCCCGAACTCGTC
TP53	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	-	8.14286	3.78e-05	0.979	GACGAGCCCGAACTCGTC
SPIC	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	42	55	+	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	93	106	+	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	22	-	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	22	-	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	22	-	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	22	-	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
SPIC	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	73	-	11.8169	3.78e-05	0.214	AAATACAGGAAGTC
ELF1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	19	-	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	25	-	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	25	-	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	25	-	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	60	71	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	60	71	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	90	101	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	96	107	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	96	107	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	96	107	+	10.6364	3.78e-05	0.0999	TTCCCGGATGTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	5	19	-	9.85246	3.78e-05	0.0524	AAGCACGCCCCCTTT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	5	19	-	9.85246	3.78e-05	0.0524	AAGCACGCCCCCTTT
ELF4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	33	44	+	10.5574	3.78e-05	0.0972	CTGCCGGAAGTT
ELF4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	86	97	+	10.5574	3.78e-05	0.0972	ACGGCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	29	-	10.5574	3.78e-05	0.0972	ACGGCGGAAGTA
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	29	-	10.5574	3.78e-05	0.0972	ACGGCGGAAGTA
ELF4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	82	-	10.5574	3.78e-05	0.0972	CTGCCGGAAGTT
ELF4	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	93	-	10.5574	3.78e-05	0.0972	CTGCCGGAAGTT
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	30	40	+	11.4364	3.78e-05	0.0153	GCACCCGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	45	55	+	11.4364	3.78e-05	0.0153	GCGGGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	56	66	+	11.4364	3.78e-05	0.0153	GCGGGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	56	66	+	11.4364	3.78e-05	0.0153	GCGGGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	56	66	+	11.4364	3.78e-05	0.0153	GCGGGGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	56	66	+	11.4364	3.78e-05	0.0153	GCGGGGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	75	85	-	11.4364	3.78e-05	0.0153	GCACCCGCGCG
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	63	75	+	11.1286	3.78e-05	0.729	CATTCAGATGTTG
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	69	81	-	11.1286	3.78e-05	0.729	CATTCAGATGTTG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	7	16	-	12.1897	3.78e-05	0.859	TCCACCTGGG
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	7	16	-	12.1897	3.78e-05	0.859	TCCACCTGGG
FIGLA	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	41	50	+	12.1897	3.78e-05	0.859	TCCACCTGGG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	6	25	-	5.58716	3.78e-05	0.0518	CCACCAACTAACCTCTCACT
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	-	12.2115	3.79e-05	0.0703	AGCCGGAGGCC
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	+	12.2115	3.79e-05	0.0703	AGCCGGAGGCC
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	17	27	+	12.5	3.79e-05	0.895	ATCTGTTTACC
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	17	27	+	12.5	3.79e-05	0.895	ATCTGTTTACC
Foxo1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	23	33	+	12.5	3.79e-05	0.895	ATCTGTTTACC
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	53	63	+	12.5	3.79e-05	0.895	CGTTGTTTACT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	82	92	-	12.5	3.79e-05	0.895	ATCTGTTTACC
SPI1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	71	84	+	5.05455	3.79e-05	0.156	GAGATCCGGAAGTG
E2F7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	87	100	+	-1.86885	3.79e-05	1	CTTTCCCGCTCAAA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	13	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	13	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	13	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	13	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	13	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	14	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	4	14	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	4	14	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	4	14	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	14	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	15	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	15	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	15	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	5	15	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	15	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	6	16	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	6	16	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	6	16	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	6	16	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	16	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	7	17	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	7	17	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	17	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	17	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	7	17	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	8	18	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	18	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	8	18	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	19	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	19	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	9	19	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	10	20	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	20	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	20	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	21	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	12	22	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	24	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	30	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	30	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	24	34	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	34	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	35	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	35	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	35	+	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	35	+	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	35	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	26	36	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	36	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	37	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	38	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	39	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	29	39	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	40	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	40	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	31	41	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	31	41	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	42	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	32	42	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	33	43	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	43	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	42	52	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	43	53	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	45	55	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	56	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	48	58	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	64	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	64	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	64	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	56	66	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	56	66	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	57	67	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	76	+	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	67	77	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	67	77	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	79	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	79	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	92	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	86	96	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	86	96	+	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	105	+	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	107	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	107	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	98	108	+	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	4	14	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	7	17	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	18	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	18	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	19	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	19	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	10	20	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	10	20	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	10	20	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	10	20	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	19	29	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	24	34	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	29	39	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	29	39	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	30	40	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	30	40	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	32	42	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	33	43	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	39	49	-	11.9024	3.79e-05	0.0169	CCCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	44	54	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	44	54	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	51	61	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	57	67	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	69	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	60	70	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	62	72	-	11.9024	3.79e-05	0.0169	TCCCCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	63	73	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	104	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	95	105	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	95	105	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	96	106	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	97	107	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	108	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	109	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	100	110	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	101	111	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	102	112	-	11.9024	3.79e-05	0.0169	CCCCCCCCCCC
Arntl	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	32	41	+	12.2951	3.79e-05	0.21	CCTCACGTGA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	4	17	-	12.0303	3.79e-05	0.0477	ATCCGCGAGGCCTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	39	52	+	7.38776	3.79e-05	0.0698	GAAGCGCAGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	39	52	+	7.38776	3.79e-05	0.0698	GAAGCGCAGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	77	90	-	7.38776	3.79e-05	0.0698	GAGGCGCAGGAGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	77	90	-	7.38776	3.79e-05	0.0698	GAGGCGCAGGAGGG
POU6F1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	12.0816	3.79e-05	1	ATTAATTAAC
POU6F1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	-	12.0816	3.79e-05	1	GTTAATTAAT
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	69	82	-	11.0769	3.79e-05	0.489	AAGAACACGTCGGC
GBX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	7	16	+	11.617	3.79e-05	1	AGCAATTAAG
GBX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	7	16	+	11.617	3.79e-05	1	AGCAATTAAG
NR1H2::RXRA	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	2	18	-	-3.11236	3.79e-05	0.941	AGGGGTCAGAGGAGAAG
NR1H2::RXRA	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	97	113	+	-3.11236	3.79e-05	0.941	AGGGGTCAGAGGAGAAG
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	26	40	+	8.2069	3.79e-05	0.0351	CTCCGCCCCCCCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	24	38	-	8.2069	3.79e-05	0.0351	CGCCGCCCCCTCCAC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	35	49	-	8.2069	3.79e-05	0.0351	CGCCGCCCAGGCCTA
EGR3	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	36	50	-	8.2069	3.79e-05	0.0351	CACCGCCGCCGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	39	53	-	8.2069	3.79e-05	0.0351	CTCCGCCCCCCCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	66	80	+	8.2069	3.79e-05	0.0351	CGCCGCCCAGGCCTA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	58	72	-	8.2069	3.79e-05	0.0351	CCCCACCCCGGCATT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	58	72	-	8.2069	3.79e-05	0.0351	CCCCACCCCGGCATT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	58	72	-	8.2069	3.79e-05	0.0351	CCCCACCCCGGCATT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	58	72	-	8.2069	3.79e-05	0.0351	CCCCACCCCGGCATT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	10	23	+	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	5	18	-	10.2759	3.79e-05	0.0289	AAGCCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	5	18	-	10.2759	3.79e-05	0.0289	AAGCCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	28	41	+	10.2759	3.79e-05	0.0289	GACCCCACCCCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	28	41	+	10.2759	3.79e-05	0.0289	GACCCCACCCCCTG
KLF14	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	38	51	+	10.2759	3.79e-05	0.0289	AAGCCCGCCCCTTC
KLF14	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	40	53	+	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	46	59	+	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	54	67	+	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	56	69	-	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	62	75	-	10.2759	3.79e-05	0.0289	CGCCCCCCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	64	77	-	10.2759	3.79e-05	0.0289	AAGCCCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	64	77	-	10.2759	3.79e-05	0.0289	AAGCCCGCCCCTTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	23	35	+	11.541	3.79e-05	0.0641	AGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	45	57	+	11.541	3.79e-05	0.0641	AGCCGTGGGGGCG
SPDEF	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	58	68	+	11.6	3.79e-05	0.225	AGCCGGATCCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	20	34	+	10.6857	3.79e-05	0.111	TGGGGTCAGAGAGGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	81	95	-	10.6857	3.79e-05	0.111	TGGGGTCAGAGAGGG
Gabpa	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	42	52	-	12.1148	3.79e-05	0.0493	CCGGAAGCTCT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	63	73	+	12.1148	3.79e-05	0.0493	CCGGAAGCTCT
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	63	73	+	12.1148	3.79e-05	0.0493	CCGGAAGCTCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	29	39	-	12.2586	3.79e-05	0.0457	AGGCGCGAAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	29	39	-	12.2586	3.79e-05	0.0457	AGGCGCGAAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	29	39	-	12.2586	3.79e-05	0.0457	AGGCGCGAAAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	29	39	-	12.2586	3.79e-05	0.0457	AGGCGCGAAAG
E2F4	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	92	102	-	12.2586	3.79e-05	0.0457	CGGCGCGAACG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	46	58	+	4.42857	3.79e-05	0.233	CGGGGAACCTCCC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	46	58	+	4.42857	3.79e-05	0.233	CGGGGAACCTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	56	65	+	11.7755	3.79e-05	0.213	CGGGGTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	56	65	+	11.7755	3.79e-05	0.213	CGGGGTTCCC
FOXC2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	58	69	-	12.0891	3.79e-05	1	TATGCAAATAAA
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	-	12.339	3.79e-05	1	GATTACGTCACC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	-	12.339	3.79e-05	1	GATTACGTCACC
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	17	26	+	12	3.79e-05	0.93	AGTCTGGAAT
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	17	26	+	12	3.79e-05	0.93	AGTCTGGAAT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	17	26	+	12	3.79e-05	0.93	AGTCTGGAAT
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	+	12.2581	3.79e-05	1	GGCATATGTC
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	1	16	-	11.8171	3.79e-05	1	GATGATGCAAATGTAC
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	1	16	-	11.8171	3.79e-05	1	GATGATGCAAATGTAC
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	71	84	-	5.77273	3.79e-05	0.379	TATCCCCCACCAAC
TAL1::TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	59	70	+	12.1011	3.79e-05	1	TCACCAGCTGCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	59	70	+	12.1011	3.79e-05	1	TCACCAGCTGCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	48	67	-	5.57798	3.79e-05	0.0518	CCCCCGCCCGCCCCACCCAG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	52	71	-	5.57798	3.79e-05	0.0518	CCCCACCCCCTCCCCCCTCT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	52	71	-	5.57798	3.79e-05	0.0518	CCCCACCCCCTCCCCCCTCT
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	10	26	+	5.89091	3.79e-05	0.0224	CCCGCCCCGCCCCGCGC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	10	26	+	5.89091	3.79e-05	0.0224	CCCGCCCCGCCCCGCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	13	29	-	5.89091	3.79e-05	0.0224	TCCGCCACACCCCCAAC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	61	71	-	12.2727	3.8e-05	0.0536	ACACTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	61	71	-	12.2727	3.8e-05	0.0536	ACACTTCCTGC
ELK4	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	98	108	-	12.2727	3.8e-05	0.0536	ACACTTCCTGC
ELK4	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	7	17	+	12.2727	3.8e-05	0.0536	ACACTTCCTGC
SP8	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	35	+	11.7895	3.8e-05	0.0265	GTCCCGCCCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	41	+	11.7895	3.8e-05	0.0265	GTCCCGCCCACC
SP8	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	62	+	11.7895	3.8e-05	0.0265	GTCCCGCCCACC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	15	25	-	12.5102	3.8e-05	0.188	GGGTGAGTCAA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	14	31	+	-11.1316	3.8e-05	0.0373	GGGCGGAGCCAAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	2	19	-	-11.1316	3.8e-05	0.0373	GGAAGAAAAGCTGGATGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	2	19	-	-11.1316	3.8e-05	0.0373	GGAAGAAAAGCTGGATGT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	11	25	-	10.1148	3.8e-05	0.388	ATGAGGCAGCATCAC
SRF	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	49	64	+	7.01639	3.8e-05	0.708	TAGCCTTATTTGGCCA
ZNF263	WILDTYPE__Antisense.flip.sense__chr14:61789501..61789615,-__294.1.0.0	67	87	-	10.7551	3.8e-05	0.0144	GAAGGAGTGATACAAAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	93	113	-	10.7551	3.8e-05	0.0144	GGAGGAACTGAAAGGGGATAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	93	113	-	10.7551	3.8e-05	0.0144	GGAGGAACTGAAAGGGGATAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	1	21	+	10.7551	3.8e-05	0.0144	GGGGCGGGGGGAGAGAAGGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	13	33	+	10.7551	3.8e-05	0.0144	GGAGGGGAGAGGGAGGAGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr14:61789501..61789615,+__2365.1.0.0	28	48	+	10.7551	3.8e-05	0.0144	GAAGGAGTGATACAAAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	40	60	+	10.7551	3.8e-05	0.0144	GGAGGAACTGAAAGGGGATAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	40	60	+	10.7551	3.8e-05	0.0144	GGAGGAACTGAAAGGGGATAA
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	9	20	+	11.8276	3.8e-05	0.365	ACGCCCACCCCA
DUXA	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	42	54	+	12.1613	3.8e-05	1	CTGAGCCAATCAT
Rxra	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	29	42	+	4.92683	3.8e-05	0.408	TGGGTGAAAGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	+	11.3966	3.8e-05	0.0554	TGCCCTTCCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	+	11.3966	3.8e-05	0.0554	TGCCCTTCCGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	-	11.3966	3.8e-05	0.0554	TGCCTGGGGGGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	5	18	+	11.4615	3.8e-05	0.0178	CCTCCTCCGCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	5	18	+	11.4615	3.8e-05	0.0178	CCTCCTCCGCCTGC
EGR1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	59	72	-	11.4615	3.8e-05	0.0178	CCACCTCCCCTTCC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	52	64	-	9.86207	3.8e-05	0.134	CACCAGGAAGAAG
Nkx2-5(var.2)	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	99	109	-	12.4727	3.8e-05	0.721	GTGCACTCAGG
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	18	28	+	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	20	30	+	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	28	38	+	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	28	38	+	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	46	56	+	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	59	69	-	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	67	77	-	11.6379	3.8e-05	0.0156	CACACCCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	67	77	-	11.6379	3.8e-05	0.0156	CACACCCCCAC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	85	95	-	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	87	97	-	11.6379	3.8e-05	0.0156	GCCCAGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	27	37	+	12.1346	3.8e-05	0.0118	GCTCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	27	37	+	12.1346	3.8e-05	0.0118	GCTCCACCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	32	42	-	12.1346	3.8e-05	0.0118	GCTCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	73	83	+	12.1346	3.8e-05	0.0118	GCTCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	73	83	+	12.1346	3.8e-05	0.0118	GCTCCTCCCTT
ETV6	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	15	24	+	12.2308	3.8e-05	0.0895	GGCGGAAATG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	24	33	+	12.2308	3.8e-05	0.0895	GGCGGAAATG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	24	33	+	12.2308	3.8e-05	0.0895	GGCGGAAATG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	42	51	-	12.2308	3.8e-05	0.0895	GGCGGAAATG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	42	51	-	12.2308	3.8e-05	0.0895	GGCGGAAATG
CUX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	66	75	+	12.2653	3.8e-05	1	TCATCGATAA
CUX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	66	75	+	12.2653	3.8e-05	1	TCATCGATAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	78	92	+	11.7027	3.8e-05	0.166	CCAGTGCAAAGTGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	78	92	+	11.7027	3.8e-05	0.166	CCAGTGCAAAGTGCA
Spz1	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	74	84	-	12	3.8e-05	0.757	AGGGTAAAAGG
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	4	14	+	12.0303	3.8e-05	0.0469	GAGCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	4	14	+	12.0303	3.8e-05	0.0469	GAGCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	8	18	-	12.0303	3.8e-05	0.0469	GAGCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	8	18	-	12.0303	3.8e-05	0.0469	GAGCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	8	18	-	12.0303	3.8e-05	0.0469	GAGCCCACCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	101	111	-	12.0303	3.8e-05	0.0469	GAGCCCACCCA
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	87	95	+	12.3023	3.8e-05	0.433	TGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	87	95	+	12.3023	3.8e-05	0.433	TGCAGGTGC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	31	44	+	5.03636	3.8e-05	0.156	AAATAGGGGAACCT
PAX9	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	20	36	-	3	3.8e-05	0.463	CGCCCTGGTTGGGTGGA
PAX9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	20	36	-	3	3.8e-05	0.463	CGCCCTGGTTGGGTGGA
PAX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	20	36	-	3	3.8e-05	0.463	CGCCCTGGTTGGGTGGA
PAX9	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	44	60	-	3	3.8e-05	0.463	CGCCCTGGTTGGGTGGA
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	66	78	+	9.92424	3.8e-05	0.252	TGGGGCTGACCCC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	66	78	+	9.92424	3.8e-05	0.252	TGGGGCTGACCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	37	49	-	9.92424	3.8e-05	0.252	TGGGGCTGACCCC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	2	12	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	2	12	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	2	12	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	2	12	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	17	27	+	12	3.81e-05	0.128	GCGCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	20	30	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	20	30	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	39	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	39	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	39	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	39	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	39	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	51	61	+	12	3.81e-05	0.128	GCGCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	49	59	-	12	3.81e-05	0.128	AGGCGGAAGCA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	59	69	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	59	69	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	59	69	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	59	69	+	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	49	59	-	12	3.81e-05	0.128	AGGCGGAAGCA
ELF5	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	54	64	-	12	3.81e-05	0.128	GCGCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	89	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	89	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	89	-	12	3.81e-05	0.128	AAGCGGAAGCG
ELF5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	88	98	-	12	3.81e-05	0.128	GCGCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	113	-	12	3.81e-05	0.128	AAGCGGAAGCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	10	29	+	5.56881	3.81e-05	0.0518	CACACACACACACACACTCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	10	29	+	5.56881	3.81e-05	0.0518	CACACACACACACACACTCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	14	28	+	11.6034	3.81e-05	0.0102	CGCCCACCTCCTCAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	91	105	+	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	91	105	+	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	91	105	+	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	91	105	+	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	17	31	-	11.6034	3.81e-05	0.0102	TCCCCACCTCTGGCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	18	32	-	11.6034	3.81e-05	0.0102	CTCCCTCCCACCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	18	32	-	11.6034	3.81e-05	0.0102	CTCCCTCCCACCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	20	34	-	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	20	34	-	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	20	34	-	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	20	34	-	11.6034	3.81e-05	0.0102	CCCCCTCCTTTCCCT
SP2	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	75	89	-	11.6034	3.81e-05	0.0102	TACCCGCCCCGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	99	113	-	11.6034	3.81e-05	0.0102	CTCCCACCTCTGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	99	113	-	11.6034	3.81e-05	0.0102	CTCCCACCTCTGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	99	113	-	11.6034	3.81e-05	0.0102	CTCCCACCTCTGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	99	113	-	11.6034	3.81e-05	0.0102	CTCCCACCTCTGCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	99	113	-	11.6034	3.81e-05	0.0102	CTCCCACCTCTGCTC
HOXB2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	10	3.81e-05	1	AGTAATTAAG
GLI2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	70	81	+	11.5	3.81e-05	0.33	CCGCCCACCCAA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	33	46	+	8.31579	3.81e-05	0.56	GCACCAGCTGCCCG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	33	46	+	8.31579	3.81e-05	0.56	GCACCAGCTGCCCG
GLIS2	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	56	69	+	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	46	59	-	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	46	59	-	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	46	59	-	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	46	59	-	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	46	59	-	9.67213	3.81e-05	0.177	CGCCCCCCGCGCCT
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	73	83	+	12.8571	3.81e-05	0.158	CACAGCTGCAT
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	73	83	+	12.8571	3.81e-05	0.158	CACAGCTGCAT
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	73	83	+	12.8571	3.81e-05	0.158	CACAGCTGCAT
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	108	+	12.8571	3.81e-05	0.158	AACAGCTGTCC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	98	112	+	11.4909	3.81e-05	0.308	CAAGAGTGAGAGGGA
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	16	30	-	11.4909	3.81e-05	0.308	CAAGAGTGAGAGGGA
EBF1	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	38	51	-	10.5574	3.81e-05	0.365	ACTCCCATGAGGCC
EBF1	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	64	77	+	10.5574	3.81e-05	0.365	ACTCCCATGAGGCC
SP8	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	54	65	+	11.7763	3.81e-05	0.0265	CCCACGCCGCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	73	84	+	11.7763	3.81e-05	0.0265	GCCCCCCCCCGC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	8	22	+	11.9787	3.81e-05	0.311	CTTGATGAGCTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	8	22	+	11.9787	3.81e-05	0.311	CTTGATGAGCTCATG
FOXC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	62	72	+	12.22	3.81e-05	1	AGTGTAAACAA
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	62	72	+	12.22	3.81e-05	1	AGTGTAAACAA
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	17	-	12.22	3.81e-05	1	AGTGTAAACAA
FOXC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	17	-	12.22	3.81e-05	1	AGTGTAAACAA
NHLH1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	28	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	11	20	-	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	36	-	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	53	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	53	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	53	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	53	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	77	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	88	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	88	+	12	3.81e-05	0.121	CGCAGCTGGC
NHLH1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	104	+	12	3.81e-05	0.121	CGCAGCTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	+	12.3273	3.81e-05	0.129	CACACGTGCT
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	+	12.3273	3.81e-05	0.129	CACACGTGCT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	12.3273	3.81e-05	0.129	GGCACGTGTT
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	12.3273	3.81e-05	0.129	GGCACGTGTT
Zfx	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	38	51	-	12.0152	3.81e-05	0.0479	CCACGCCGGGCCTA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	2	18	+	11	3.81e-05	0.338	GGGTGAGGGGCAGCGGA
PKNOX2	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	46	57	-	5.22951	3.81e-05	0.598	TGACATGTACCA
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	46	59	+	9.04286	3.81e-05	0.151	TGATGGCGTCACGA
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	71	84	-	9.04286	3.81e-05	0.151	TGATGGCGTCACGA
E2F1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	3	14	+	11.9672	3.81e-05	0.41	CATGGCGCCCCA
E2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	101	112	-	11.9672	3.81e-05	0.41	CATGGCGCCCCA
E2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	101	112	-	11.9672	3.81e-05	0.41	CATGGCGCCCCA
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	27	38	+	11.459	3.81e-05	0.118	AACCAGGAAGCT
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	27	38	+	11.459	3.81e-05	0.118	AACCAGGAAGCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	29	42	-	10.2586	3.82e-05	0.0289	GGCCCCGCCTCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	29	42	-	10.2586	3.82e-05	0.0289	GGCCCCGCCTCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	29	42	-	10.2586	3.82e-05	0.0289	GGCCCCGCCTCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	29	42	-	10.2586	3.82e-05	0.0289	GGCCCCGCCTCCGC
KLF14	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	73	86	+	10.2586	3.82e-05	0.0289	GGCCCCGCCTCCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	26	41	-	11.3091	3.82e-05	0.0374	CCACACCCACGCCGGC
FEV	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	12.2308	3.82e-05	0.107	ACCGGAAACC
FEV	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
FEV	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	12.2308	3.82e-05	0.107	ACAGGAAGTG
SPIC	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	65	78	+	11.8028	3.82e-05	0.214	AGGAAGCGGAAGAC
SPIC	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	37	50	-	11.8028	3.82e-05	0.214	AGGAAGCGGAAGAC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	4	18	-	10.6714	3.82e-05	0.112	CGGGGGCGAGGGGTG
JDP2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	3	11	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	2	10	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	2	10	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	2	10	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	2	10	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	5	13	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	5	13	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	19	27	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	13	21	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	15	23	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	23	31	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	25	33	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	25	33	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	37	45	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	41	49	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	51	59	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	70	78	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	92	100	+	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	84	92	-	10.4655	3.82e-05	0.243	CTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	105	113	+	10.4655	3.82e-05	0.243	CTGACTCAT
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	57	67	-	12.2586	3.82e-05	0.487	AAATCTCTGAA
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	2	14	+	11.931	3.82e-05	1	TACATTTGCATCA
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	2	14	+	11.931	3.82e-05	1	TACATTTGCATCA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	26	38	+	11.931	3.82e-05	1	GGAATTTGCATCT
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	24	36	-	11.931	3.82e-05	1	GGAATTTGCATCT
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	24	36	-	11.931	3.82e-05	1	GGAATTTGCATCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	50	60	+	12	3.82e-05	0.0469	AGCTACGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	50	60	+	12	3.82e-05	0.0469	AGCTACGCCCT
TEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	-	11.7636	3.82e-05	1	GGTTACGTCACC
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	-	11.7636	3.82e-05	1	GGTTACGTCACC
TEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	-	11.7636	3.82e-05	1	GGTTACGTCACC
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	-	11.7636	3.82e-05	1	GGTTACGTCACC
TEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	-	11.7636	3.82e-05	1	GATTACGTCACC
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	-	11.7636	3.82e-05	1	GATTACGTCACC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	72	83	+	10.541	3.82e-05	0.0972	AATCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	72	83	+	10.541	3.82e-05	0.0972	AATCAGGAAGTC
SPI1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	69	82	-	5.01818	3.82e-05	0.156	AGTAAGAGGAAGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	44	55	-	12.1091	3.82e-05	0.0548	CGCCTCCCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	67	78	+	12.1091	3.82e-05	0.0548	GGCCCCGGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	67	78	+	12.1091	3.82e-05	0.0548	GGCCCCGGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	+	12.1091	3.82e-05	0.0548	TGCCGCCGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	+	12.1091	3.82e-05	0.0548	TGCCGCCGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	+	12.1091	3.82e-05	0.0548	TGCCGCCGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	+	12.1091	3.82e-05	0.0548	TGCCGCCGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	-	12.1091	3.82e-05	0.0548	AGCCCGGCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	-	12.1091	3.82e-05	0.0548	AGCCCGGCGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	-	12.1091	3.82e-05	0.0548	AGCCCGGCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	-	12.1091	3.82e-05	0.0548	AGCCCGGCGGCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	103	114	-	12.1091	3.82e-05	0.0548	GGCCCCGGGGCT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	12.3269	3.82e-05	0.131	ATCACGTGTC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	12.3269	3.82e-05	0.131	ATCACGTGTC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	56	66	+	12.102	3.82e-05	0.228	ATTCTAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	56	66	+	12.102	3.82e-05	0.228	ATTCTAGGAAG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	85	95	-	12.102	3.82e-05	0.228	CTTCCGGAAAT
USF2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	44	-	12.3673	3.82e-05	0.111	GCCACGTGCCT
USF2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	69	-	12.3673	3.82e-05	0.111	GCCACGTGCCT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	81	+	12.3673	3.82e-05	0.111	GCCACGTGCCT
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	81	+	12.3673	3.82e-05	0.111	GCCACGTGCCT
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	81	+	12.3673	3.82e-05	0.111	GCCACGTGCCT
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	81	+	12.3673	3.82e-05	0.111	GCCACGTGCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	2	12	+	12.1154	3.82e-05	0.0118	CCCCCTCCTCG
SP1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	40	50	+	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	42	52	-	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	63	73	+	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	65	75	-	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	71	81	-	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	71	81	-	12.1154	3.82e-05	0.0118	CTCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	12	22	+	11.878	3.82e-05	0.017	CCCACTCCTAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	12	22	+	11.878	3.82e-05	0.017	CCCACTCCTAC
SP3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	56	66	+	11.878	3.82e-05	0.017	ACCGCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	49	59	-	11.878	3.82e-05	0.017	ACCGCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	49	59	-	11.878	3.82e-05	0.017	ACCGCGCCCCC
Myog	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	79	89	+	12.8367	3.82e-05	0.137	CACAGCTGGGA
Myog	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	81	91	+	12.8367	3.82e-05	0.137	CACAGCTGGGA
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	68	79	+	10.5484	3.82e-05	0.928	GGTAAAAATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	68	79	+	10.5484	3.82e-05	0.928	GGTAAAAATAGC
CREB3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	31	44	-	11	3.83e-05	0.236	GGGTCACGTGACCG
CREB3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	57	70	-	11	3.83e-05	0.236	GGGTCACGTGACCG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	19	29	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	19	29	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	19	29	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	19	29	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	25	35	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	35	45	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	35	45	+	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	63	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	80	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	90	-	11.7705	3.83e-05	0.137	AACAGGAAGTT
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	47	57	-	12.0862	3.83e-05	0.227	TGCTGTGGTCA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	32	42	+	12.0862	3.83e-05	0.227	CTCTGTGGCTG
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	32	42	+	12.0862	3.83e-05	0.227	CTCTGTGGCTG
HNF1B	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	82	94	-	11.2121	3.83e-05	0.758	GTTAAAAAGTAAT
E2F6	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	8	18	-	12.4655	3.83e-05	0.0529	CGGCGGGAGAG
E2F6	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	85	95	+	12.4655	3.83e-05	0.0529	CGGCGGGAGAG
E2F6	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	97	107	+	12.4655	3.83e-05	0.0529	CGGCGGGAGAG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	52	66	-	8.17241	3.83e-05	0.0354	AACCGCCCCCTCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	52	66	-	8.17241	3.83e-05	0.0354	AACCGCCCCCTCCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	31	42	-	12.0727	3.83e-05	0.0893	TCCCCGAGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	31	42	-	12.0727	3.83e-05	0.0893	TCCCCGAGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	63	74	-	12.0727	3.83e-05	0.0893	TCCCCGAGGCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	63	74	-	12.0727	3.83e-05	0.0893	TCCCCGAGGCCA
ZIC3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	48	62	+	9.57143	3.83e-05	0.103	GGCACCCCGGGGGGC
ZIC3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	53	67	-	9.57143	3.83e-05	0.103	GGCACCCCGGGGGGC
NRL	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	26	36	+	11.3462	3.83e-05	0.791	GAGTTGCTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	17	27	-	11.3462	3.83e-05	0.791	GAGTTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	45	55	+	11.3462	3.83e-05	0.791	ATGCTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	45	55	+	11.3462	3.83e-05	0.791	ATGCTGCTGAC
FOXP2	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	81	91	-	12.8788	3.83e-05	1	AAATAAACAAG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	12.1636	3.83e-05	0.103	ACCGGATGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	12.1636	3.83e-05	0.103	ACCGGATGCT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	27	37	-	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	27	37	-	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	47	57	+	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	47	57	+	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	38	48	-	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	58	68	-	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	78	88	+	12.2414	3.83e-05	0.0457	CAGCGGGAGGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	52	68	+	5.85455	3.83e-05	0.0226	CTCGCCCCTCCCATCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	52	68	+	5.85455	3.83e-05	0.0226	CTCGCCCCTCCCATCGG
CENPB	WILDTYPE__mrna.flip.sense__chr2:122407077..122407191,-__1173.1.0.0	35	49	-	11.5192	3.83e-05	0.829	CCCGGGTACACCATA
CENPB	FLIPPED__mrna.flip.antisense__chr2:122407077..122407191,+__2494.1.0.0	66	80	+	11.5192	3.83e-05	0.829	CCCGGGTACACCATA
EBF1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	71	84	-	10.541	3.84e-05	0.365	AGACCCAGGGGAGC
EBF1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	31	44	+	10.541	3.84e-05	0.365	AGACCCAGGGGAGC
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	4	13	-	12.7213	3.84e-05	0.89	ATAACTGCCA
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	4	13	-	12.7213	3.84e-05	0.89	ATAACTGCCA
Myb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	43	52	-	12.7213	3.84e-05	0.89	ATAACTGCCA
Myb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	43	52	-	12.7213	3.84e-05	0.89	ATAACTGCCA
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	27	36	+	10.8909	3.84e-05	1	CAATCAATTA
PAX7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	27	36	+	10.8909	3.84e-05	1	CAATCAATTA
PAX7	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	95	104	+	10.8909	3.84e-05	1	CAATCAATTA
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	53	66	-	11.7903	3.84e-05	0.411	CTTCCTAGAATAGA
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	53	66	-	11.7903	3.84e-05	0.411	CTTCCTAGAATAGA
FOSL1	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	1	11	-	12.2364	3.84e-05	0.173	GATGACTCACT
FOSL1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	18	28	+	12.2364	3.84e-05	0.173	GATGACTCACT
ZIC4	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	80	94	+	11.4182	3.84e-05	0.109	AGACCCCTGCGGCGG
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	75	87	-	11.082	3.84e-05	0.518	AGATGATGAAACG
ATF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	75	87	-	11.082	3.84e-05	0.518	AGATGATGAAACG
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	36	49	+	11.4423	3.84e-05	0.0178	TTCTCTCCCCCGCG
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	47	60	+	11.4423	3.84e-05	0.0178	CTTCCTCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	35	48	-	11.4423	3.84e-05	0.0178	CCGCAGCCCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	35	48	-	11.4423	3.84e-05	0.0178	CCGCAGCCCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	35	48	-	11.4423	3.84e-05	0.0178	CCGCAGCCCCCGGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	35	48	-	11.4423	3.84e-05	0.0178	CCGCAGCCCCCGGA
EGR1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	38	51	-	11.4423	3.84e-05	0.0178	CCCCTGCCTCCTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	39	52	-	11.4423	3.84e-05	0.0178	TCGCCTCCCTCGCA
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	55	68	+	11.4423	3.84e-05	0.0178	CTTCCTCTCCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	47	60	-	11.4423	3.84e-05	0.0178	CTTCCTCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	64	77	+	11.4423	3.84e-05	0.0178	CCCCTGCCTCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	64	77	+	11.4423	3.84e-05	0.0178	CCCCTGCCTCCTCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	52	65	-	11.4423	3.84e-05	0.0178	CCTCCACCCCTGGC
EGR1	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	67	80	+	11.4423	3.84e-05	0.0178	CCGCAGCCCCCGGA
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	55	68	-	11.4423	3.84e-05	0.0178	CTTCCTCTCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	68	81	-	11.4423	3.84e-05	0.0178	CTCACGCCTCCTCT
MSC	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	42	51	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	73	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	73	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	73	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	73	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	86	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	86	+	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	51	-	11.622	3.84e-05	0.569	GCCAGCTGCT
MSC	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	112	-	11.622	3.84e-05	0.569	GCCAGCTGCT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	10	21	-	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	10	21	-	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	27	38	-	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	12	23	+	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	42	53	+	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	42	53	+	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	77	88	+	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	77	88	+	11.9	3.84e-05	0.217	TCCGCCCACCTC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	23	37	-	11.4545	3.84e-05	0.0942	CGCTCGCGCTCCTTC
Myod1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	9	21	+	12.8163	3.84e-05	0.143	CCCACCTGCCGCA
Myod1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	11	23	+	12.8163	3.84e-05	0.143	TCCAGCTGCCTGG
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	92	104	-	12.8163	3.84e-05	0.143	TCCAGCTGCCTGG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	92	104	-	12.8163	3.84e-05	0.143	TCCAGCTGCCTGG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	92	104	-	12.8163	3.84e-05	0.143	TCCAGCTGCCTGG
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	92	104	-	12.8163	3.84e-05	0.143	TCCAGCTGCCTGG
GCM1	WILDTYPE__mrna.flip.sense__chr10:6622203..6622317,-__1147.1.0.0	8	18	-	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	53	63	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	53	63	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	53	63	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	53	63	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	53	63	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	86	96	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
GCM1	FLIPPED__mrna.flip.antisense__chr10:6622203..6622317,+__2478.1.0.0	97	107	+	11.898	3.84e-05	0.531	ACTGCGGGTGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	33	52	-	5.54128	3.84e-05	0.0521	CCCCACGTCCCACCCCCCCC
RREB1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	63	82	+	5.54128	3.84e-05	0.0521	CCCCACGTCCCACCCCCCCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	24	44	-	10.7347	3.84e-05	0.0144	GAAGCAGCAGGAAATGAGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	24	44	-	10.7347	3.84e-05	0.0144	GAAGCAGCAGGAAATGAGGCA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	60	80	-	10.7347	3.84e-05	0.0144	GGAGGAGGCAGAGGCGGTCTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	78	98	-	10.7347	3.84e-05	0.0144	AGGGCAGAAAGGGAAAAGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	88	108	-	10.7347	3.84e-05	0.0144	GATGAAGTGGGGAAGTGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	88	108	-	10.7347	3.84e-05	0.0144	GATGAAGTGGGGAAGTGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	88	108	-	10.7347	3.84e-05	0.0144	GATGAAGTGGGGAAGTGGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	88	108	-	10.7347	3.84e-05	0.0144	GATGAAGTGGGGAAGTGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	92	112	-	10.7347	3.84e-05	0.0144	AAGGGATGTGGGGGATGGTGG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	3	23	+	10.7347	3.84e-05	0.0144	AAGGGATGTGGGGGATGGTGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	35	55	+	10.7347	3.84e-05	0.0144	GGAGGAGGCAGAGGCGGTCTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	35	55	+	10.7347	3.84e-05	0.0144	GGAGGAGGCAGAGGCGGTCTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	35	55	+	10.7347	3.84e-05	0.0144	GGAGGAGGCAGAGGCGGTCTG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	35	55	+	10.7347	3.84e-05	0.0144	GGAGGAGGCAGAGGCGGTCTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	12.1379	3.84e-05	0.106	ACCGGAAGAA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	12.1379	3.84e-05	0.106	ACCGGAAGAA
IRF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	62	79	-	7.11927	3.84e-05	0.611	AGAAAAAGAAAGCAAAAC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	+	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	+	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	-	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	-	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	-	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	-	12.1455	3.84e-05	0.0682	AGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	-	12.1455	3.84e-05	0.0682	CGCCGCGGGCG
SREBF2	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	24	33	-	12.3371	3.84e-05	0.871	ATCGGGTGAC
SREBF2	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	82	91	+	12.3371	3.84e-05	0.871	ATCGGGTGAC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	65	83	-	11.5323	3.84e-05	0.147	GACGGCAGCAGAGCATGCA
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	-	12.7727	3.84e-05	0.217	TTCACGTGGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	9	23	+	11.5862	3.84e-05	0.0103	ACCCCGCCTCCAAGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	9	23	+	11.5862	3.84e-05	0.0103	ACCCCGCCTCCAAGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	9	23	+	11.5862	3.84e-05	0.0103	ACCCCGCCTCCAAGA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	17	31	+	11.5862	3.84e-05	0.0103	ACCCTGCCCCCCGGG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	17	31	+	11.5862	3.84e-05	0.0103	ACCCTGCCCCCCGGG
SP2	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	41	+	11.5862	3.84e-05	0.0103	CCTCCGCCCCCATGA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	66	80	+	11.5862	3.84e-05	0.0103	GCCCTGCCCACTGGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	66	80	+	11.5862	3.84e-05	0.0103	GCCCTGCCCACTGGG
SP2	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	73	87	+	11.5862	3.84e-05	0.0103	ACCCTGCCCCCCGGG
SP2	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	28	42	-	11.5862	3.84e-05	0.0103	ACCCTGCCCCCCGGG
SP2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	84	98	-	11.5862	3.84e-05	0.0103	ACCCTGCCCCCCGGG
KLF14	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	4	17	-	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAAA
KLF14	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	7	20	-	10.2414	3.84e-05	0.0289	GGCTCCGCCCTCTC
KLF14	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	29	42	+	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAAA
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	30	43	-	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAGT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	30	43	-	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAGT
KLF14	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	73	86	-	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAAA
KLF14	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	95	108	+	10.2414	3.84e-05	0.0289	GGCTCCGCCCTCTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	98	111	+	10.2414	3.84e-05	0.0289	GGCCCCGCCCCAAA
EHF	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	6	17	+	11.4426	3.85e-05	0.118	GAACAGGAAGTG
EHF	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	16	27	+	11.4426	3.85e-05	0.118	GAACAGGAAGTG
EHF	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	57	-	11.4426	3.85e-05	0.118	GAACAGGAAGTG
EHF	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	58	69	+	11.4426	3.85e-05	0.118	GAACAGGAAGTG
EHF	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	99	-	11.4426	3.85e-05	0.118	GAACAGGAAGTG
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	36	52	-	-13.3714	3.85e-05	0.94	CACTTTCCAAGCATTGC
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	11.5	3.85e-05	1	ACCATATGTA
CTCF	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	96	114	-	9.98361	3.85e-05	0.11	AGGCCCCTAGGTGGCTACA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	3	13	+	12.2241	3.85e-05	0.0457	GGGCGGGGAAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	3	13	+	12.2241	3.85e-05	0.0457	GGGCGGGGAAA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	7	17	-	12.2241	3.85e-05	0.0457	GGGCGGGGAAA
E2F4	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	31	41	+	12.2241	3.85e-05	0.0457	GGGCGGGGAAA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	37	+	11.7632	3.85e-05	0.0267	CCTCCGCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	37	+	11.7632	3.85e-05	0.0267	CCTCCGCCCACT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	37	+	11.7632	3.85e-05	0.0267	CCTCCGCCCACT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	5	17	+	4.36735	3.85e-05	0.233	AGGGTGTCCCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	5	17	+	4.36735	3.85e-05	0.233	AGGGTGTCCCCCA
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	26	40	+	11.9574	3.85e-05	0.311	TCTCGTGACGTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	26	40	+	11.9574	3.85e-05	0.311	TCTCGTGACGTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	69	83	+	11.9574	3.85e-05	0.311	TAGAATGATCTAATG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	69	83	+	11.9574	3.85e-05	0.311	TAGAATGATCTAATG
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	69	83	+	11.9574	3.85e-05	0.311	TAGAATGATCTAATG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	69	83	+	11.9574	3.85e-05	0.311	TAGAATGATCTAATG
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	78	92	-	8.96053	3.85e-05	0.224	TGGATGAGTCACCGC
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	44	58	+	11.75	3.85e-05	0.335	CAGGAGCAGAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	44	58	+	11.75	3.85e-05	0.335	CAGGAGCAGAGTCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	79	93	+	11.75	3.85e-05	0.335	CAGGAGCAGAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	79	93	+	11.75	3.85e-05	0.335	CAGGAGCAGAGTCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	13	32	-	5.53211	3.85e-05	0.0521	CCCCTCCACACCTCCTCACT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	13	32	-	5.53211	3.85e-05	0.0521	CCCCTCCACACCTCCTCACT
T	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	13	28	+	9.36538	3.85e-05	1	TGACAAATGGATGTCA
T	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	34	49	-	9.36538	3.85e-05	1	TGACAAATGGATGTCA
T	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	34	49	-	9.36538	3.85e-05	1	TGACAAATGGATGTCA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	16	30	+	9.55714	3.85e-05	0.103	CGCCCCCCACCTCGC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	14	27	+	11.7887	3.85e-05	0.214	GAAAATAGGAAGTG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	14	27	+	11.7887	3.85e-05	0.214	GAAAATAGGAAGTG
SPIC	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	39	52	-	11.7887	3.85e-05	0.214	GAAAATAGGAAGTG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	3	16	+	8.02128	3.85e-05	0.0959	GCACCCCTGGGGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	3	16	+	8.02128	3.85e-05	0.0959	GCACCCCTGGGGTG
ZIC1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	36	49	+	8.02128	3.85e-05	0.0959	GGCCCCCAGCGGTT
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	27	40	-	8.02128	3.85e-05	0.0959	GCACCCCTGGGGTG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	27	40	-	8.02128	3.85e-05	0.0959	GCACCCCTGGGGTG
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	17	26	-	11.8548	3.85e-05	1	CTTTTCCACC
NFAT5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	47	56	-	11.8548	3.85e-05	1	CTTTTCCACC
NFAT5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	47	56	-	11.8548	3.85e-05	1	CTTTTCCACC
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	36	45	+	11.8548	3.85e-05	1	CTTTTCCACC
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	36	45	+	11.8548	3.85e-05	1	CTTTTCCACC
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	19	35	-	5.83636	3.85e-05	0.0227	CAACCTCCGCCCCCGCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	79	95	+	5.83636	3.85e-05	0.0227	CAACCTCCGCCCCCGCT
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	30	40	-	12.4898	3.85e-05	0.189	ACGTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	50	60	-	12.4898	3.85e-05	0.189	ACGTGACTCAG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	77	90	-	7.32653	3.85e-05	0.0701	GAGGCGCAGGCGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	77	90	-	7.32653	3.85e-05	0.0701	GAGGCGCAGGCGGG
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	33	44	+	11.8103	3.85e-05	0.365	CCGACCACCATG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	33	44	+	11.8103	3.85e-05	0.365	CCGACCACCATG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	16	25	+	11.6147	3.86e-05	0.0499	CACCCCCCTC
ZNF740	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	19	28	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	30	39	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	30	39	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	44	53	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	46	55	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	46	55	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	46	55	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	46	55	+	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	57	66	+	11.6147	3.86e-05	0.0499	CACCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	69	78	+	11.6147	3.86e-05	0.0499	CACCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	69	78	+	11.6147	3.86e-05	0.0499	CACCCCCCTC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	25	34	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	28	37	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	28	37	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	28	37	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	28	37	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	40	49	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	40	49	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	67	76	-	11.6147	3.86e-05	0.0499	CACCCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	87	96	-	11.6147	3.86e-05	0.0499	GCCCCCCCCG
Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	49	62	+	4.87805	3.86e-05	0.408	AAGGTCACAGGTCT
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	49	62	+	4.87805	3.86e-05	0.408	AAGGTCACAGGTCT
EGR4	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	16	31	-	11.2909	3.86e-05	0.0374	GGATGCCCACCCACCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	49	64	+	11.2909	3.86e-05	0.0374	CCCCTTCCACGCATTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	49	64	+	11.2909	3.86e-05	0.0374	CCCCTTCCACGCATTC
RFX3	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	-	10.4848	3.86e-05	0.234	CGCGACCATGGTAACC
RFX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	-	10.4848	3.86e-05	0.234	CATTGGTATGACAACA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	+	11.3621	3.86e-05	0.0554	CGCCCCAGAGGCC
NFYB	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	28	42	-	11.8846	3.86e-05	0.131	CCAGGGGCCAATGGC
EGR2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	51	61	-	10.7931	3.86e-05	0.0799	GCGCCCGCGCA
Tcf7	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	41	52	+	10.629	3.86e-05	1	CAAGAGCAAAGA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	26	36	+	11.9848	3.86e-05	0.0469	CGCTCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	26	36	+	11.9848	3.86e-05	0.0469	CGCTCCACCCA
Crx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	39	49	-	12.2931	3.86e-05	1	CGGAGGATTAA
Crx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	39	49	-	12.2931	3.86e-05	1	CGGAGGATTAA
Crx	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	98	108	+	12.2931	3.86e-05	1	CAGTGGATTAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	22	32	+	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	22	32	+	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	62	72	-	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	62	72	-	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	62	72	-	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	62	72	-	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	83	93	-	12.0769	3.86e-05	0.0118	CGCCCGCCCTC
TFEC	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	12.0732	3.86e-05	0.146	GTCACGTGGT
TFEC	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	12.0732	3.86e-05	0.146	GTCACGTGCT
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	12.0732	3.86e-05	0.146	GTCACGTGGT
TFEC	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	12.0732	3.86e-05	0.146	GTCACGTGCT
EOMES	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	73	85	+	12.0244	3.86e-05	1	TAAGTGTGAATTG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	6	18	-	9.82759	3.86e-05	0.134	GACCCGGAAGATC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	6	18	-	9.82759	3.86e-05	0.134	GACCCGGAAGATC
MEF2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	14	25	-	10.5161	3.86e-05	0.928	GTTAAATATAGA
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	14	25	-	10.5161	3.86e-05	0.928	GTTAAATATAGA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	97	108	-	12	3.86e-05	0.0857	TGCCTCCAGGCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	19	28	+	11.9899	3.86e-05	0.291	GGGCCTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	85	94	+	11.9899	3.86e-05	0.291	GGGCCTTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.1.0	85	94	+	11.9899	3.86e-05	0.291	GGGCCTTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	105	114	+	11.9899	3.86e-05	0.291	GGGCCTTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	1	10	-	11.9899	3.86e-05	0.291	GGGCCTTTCC
HES7	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	+	5.27586	3.86e-05	0.189	GGACACATGCCA
HES7	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	-	5.27586	3.86e-05	0.189	GGACACATGCCA
MLX	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	11.4714	3.86e-05	0.212	GTCACGTGCC
MLX	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	11.4714	3.86e-05	0.212	GTCACGTGCC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	16	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	16	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	25	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	27	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	32	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	53	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	58	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	58	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	58	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	58	+	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	25	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	39	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	71	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	71	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	75	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	83	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	83	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	83	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	83	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	92	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
FLI1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	108	-	12.0851	3.86e-05	0.0992	ACAGGAAATG
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	76	95	-	5.52294	3.86e-05	0.0521	AAACAACAAACCAACTGACC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	6	23	+	-11.1842	3.86e-05	0.0377	GGGAGGGGGGAGGGGTGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	32	49	+	-11.1842	3.86e-05	0.0377	CTGAGGGAGGGAGGAGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	66	83	-	-11.1842	3.86e-05	0.0377	CTGAGGGAGGGAGGAGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	92	109	-	-11.1842	3.86e-05	0.0377	GGGAGGGGGGAGGGGTGG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	-	11.6393	3.86e-05	0.0586	GGCCCCGTGGGGT
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	38	50	+	11.6393	3.86e-05	0.0586	TCCCATGAGGGGA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	61	73	-	11.6393	3.86e-05	0.0586	TCCCATGAGGGGA
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	8	17	+	12.6393	3.86e-05	0.333	TGCACGTGGA
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	8	17	+	12.6393	3.86e-05	0.333	TGCACGTGGA
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	90	99	+	12.6393	3.86e-05	0.333	TGCACGTGGA
Nr2e1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	13	21	-	12.3548	3.86e-05	1	GAAAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	42	50	-	12.3548	3.86e-05	1	GAAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	42	50	-	12.3548	3.86e-05	1	GAAAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	22	30	+	12.3548	3.86e-05	1	GAAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	59	67	+	12.3548	3.86e-05	1	GAAAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	59	67	+	12.3548	3.86e-05	1	GAAAGTCAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	1	10	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	1	10	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	1	10	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	1	10	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	13	22	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	27	36	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	27	36	-	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	67	76	+	11.6667	3.86e-05	0.165	GGAGGGGGGC
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	93	102	-	11.6667	3.86e-05	0.165	GGAGGGGGGC
MAX::MYC	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	33	43	+	11.6531	3.86e-05	0.285	GAGAACGTGGA
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	72	82	-	11.6531	3.86e-05	0.285	GAGAACGTGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	72	82	-	11.6531	3.86e-05	0.285	GAGAACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	72	82	-	11.6531	3.86e-05	0.285	GAGAACGTGGA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	29	42	+	12.3276	3.86e-05	0.24	CTGCCTGGAAACAG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	49	63	+	11.75	3.86e-05	0.503	GTATATAAAGGAAGT
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	49	63	+	11.75	3.86e-05	0.503	GTATATAAAGGAAGT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	5	17	-	4.34694	3.86e-05	0.233	TGGGGGACACCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	5	17	-	4.34694	3.86e-05	0.233	TGGGGGACACCCT
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	27	37	+	11.3818	3.86e-05	0.0155	CCGCGTGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	99	109	+	11.3818	3.86e-05	0.0155	GAACCTGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	6	16	-	11.3818	3.86e-05	0.0155	GAACCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	28	38	-	11.3818	3.86e-05	0.0155	CCGCGTGCCCA
Vdr	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	37	52	-	5.95082	3.87e-05	0.833	CGGTCCACTGGGTCCG
Vdr	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	63	78	+	5.95082	3.87e-05	0.833	CGGTCCACTGGGTCCG
EGR2	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	70	80	-	10.7759	3.87e-05	0.0799	CGGCCCACGCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	19	32	+	9.9697	3.87e-05	0.253	CAGCCACGTCTGAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	44	57	+	9.9697	3.87e-05	0.253	TTGCAACGTCACTA
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	44	57	+	9.9697	3.87e-05	0.253	TTGCAACGTCACTA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	21	34	-	9.9697	3.87e-05	0.253	CAGCCACGTCTGAA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	21	34	-	9.9697	3.87e-05	0.253	CAGCCACGTCTGAA
CREB3L1	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	58	71	-	9.9697	3.87e-05	0.253	TTGCAACGTCACTA
HINFP	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	35	46	+	11.7727	3.87e-05	0.109	CCACGTCCTCAG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	69	80	-	11.7727	3.87e-05	0.109	CCACGTCCTCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	69	80	-	11.7727	3.87e-05	0.109	CCACGTCCTCAG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	69	80	-	11.7727	3.87e-05	0.109	CCACGTCCTCAG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	69	80	-	11.7727	3.87e-05	0.109	CCACGTCCTCAG
Foxa2	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	73	84	-	12.25	3.87e-05	0.923	TGTTGACACAAC
Foxa2	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	98	109	-	12.25	3.87e-05	0.923	TGTTGACACAAC
Foxa2	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	6	17	+	12.25	3.87e-05	0.923	TGTTGACACAAC
Foxa2	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	31	42	+	12.25	3.87e-05	0.923	TGTTGACACAAC
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	56	-	2.87273	3.87e-05	0.47	TGGGTCGGAGGTTA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	56	-	2.87273	3.87e-05	0.47	TGGGTCGGAGGTTA
RXRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	56	-	2.87273	3.87e-05	0.47	TGGGTCGGAGGTTA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	56	-	2.87273	3.87e-05	0.47	TGGGTCGGAGGTTA
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	16	26	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	16	26	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	26	36	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	43	53	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	43	53	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	40	50	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	40	50	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	40	50	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	40	50	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	44	54	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	61	71	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	86	96	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	86	96	+	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	83	93	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	83	93	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	89	99	-	12.431	3.87e-05	0.0529	CGGCGGGAGGA
ZBTB33	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	13	27	-	11.4394	3.87e-05	0.0942	TTCTCGCGGCTGCCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	88	102	+	11.4394	3.87e-05	0.0942	TTCTCGCGGCTGCCC
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	12.0345	3.87e-05	1	AGCATATGTC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	23	33	+	7.57143	3.87e-05	0.248	AATGAATCATT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	104	114	-	7.57143	3.87e-05	0.248	AATGAATCATT
KLF13	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	17	34	+	6.53448	3.87e-05	0.22	CAGAAGCGCCCCCTTGGC
JUN	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	17	29	-	11.8163	3.87e-05	0.301	AAAATGAGGTAAG
JUN	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	39	51	-	11.8163	3.87e-05	0.301	AGGGTGAGGCCAC
HES5	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	-	4.91379	3.87e-05	0.296	GGACACATGCCA
HES5	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	+	4.91379	3.87e-05	0.296	GGACACATGCCA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	4	18	-	11.6757	3.87e-05	0.168	GGGTGTCAGAGGTTA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	88	97	-	11.9655	3.87e-05	0.122	CGCACCTGAG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	96	109	+	7.30612	3.87e-05	0.0701	TGGGCCGAGTGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	96	109	+	7.30612	3.87e-05	0.0701	TGGGCCGAGTGGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	44	+	11.4231	3.87e-05	0.0179	TCCCCGCCCTCGGG
MNT	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	12.6212	3.87e-05	0.254	CCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	12.6212	3.87e-05	0.254	CCCACGTGAC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	12.6212	3.87e-05	0.254	CCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	12.6212	3.87e-05	0.254	CCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	12.6212	3.87e-05	0.254	CCCACGTGAC
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	4	17	+	9	3.87e-05	0.151	ATCTTACGTCACCG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	4	17	+	9	3.87e-05	0.151	ATCTTACGTCACCG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	4	17	+	9	3.87e-05	0.151	ATCTTACGTCACCG
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	4	17	+	9	3.87e-05	0.151	ATCTTACGTCACCG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	4	17	+	9	3.87e-05	0.151	ATCTTACGTCACCG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	8	21	+	11.9848	3.87e-05	0.048	CAGCCCAGGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	11	24	+	11.9848	3.87e-05	0.048	GTCTCCAGGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	43	56	-	11.9848	3.87e-05	0.048	GTCTCCAGGGCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	65	78	+	11.9848	3.87e-05	0.048	TCTGGCGCGGCCTT
Zfx	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	91	104	-	11.9848	3.87e-05	0.048	GTCTCCAGGGCCTG
EGR3	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	5	19	+	8.13793	3.87e-05	0.0356	CCCCGCCCCTGCAGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	28	42	+	8.13793	3.87e-05	0.0356	CCCCGCCCTCACACC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	28	42	+	8.13793	3.87e-05	0.0356	CCCCGCCCTCACACC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	96	110	-	8.13793	3.87e-05	0.0356	CCCCGCCCCTGCAGG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	96	110	-	8.13793	3.87e-05	0.0356	CCCCGCCCCTGCAGG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	17	31	-	10.0656	3.88e-05	0.388	ATGAGTCAGCCCTGG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	41	55	+	10.0656	3.88e-05	0.388	ATGAGTCAGCCCTGG
Klf4	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	6	15	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	6	15	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	6	15	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	6	15	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	6	15	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	8	17	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	10	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	10	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	11	20	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	12	21	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	12	21	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	13	22	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	13	22	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	15	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	15	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	15	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	15	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	15	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	17	26	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	17	26	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	19	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	19	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	20	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	11	20	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	14	23	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	23	32	+	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	24	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	26	35	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	26	35	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	26	35	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	26	35	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	17	26	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	19	28	-	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	19	28	-	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	19	28	-	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	19	28	-	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	19	28	-	12.0102	3.88e-05	0.0173	TGGGTGTAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	28	37	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	28	37	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	28	37	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	28	37	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	30	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	33	42	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	33	42	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	37	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	37	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	44	53	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	44	53	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	44	53	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	44	53	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	54	63	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	54	63	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	56	65	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	50	59	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	61	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	61	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	62	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	78	87	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	82	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	84	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	85	94	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	95	104	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	100	109	+	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	102	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
Klf4	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	109	-	12.0102	3.88e-05	0.0173	GGGGCGGAGC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	57	66	-	12.2115	3.88e-05	0.0907	CACGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	57	66	-	12.2115	3.88e-05	0.0907	CACGGAAGTG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	94	112	+	9.96721	3.88e-05	0.11	CGTCCACTTGGGGAAAGTG
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	94	112	+	9.96721	3.88e-05	0.11	CGTCCACTTGGGGAAAGTG
SOX9	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	49	57	-	11.4268	3.88e-05	1	CTATTGTTA
STAT1	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	23	33	-	11.7455	3.88e-05	0.292	TTGCCGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	82	92	+	11.7455	3.88e-05	0.292	TTGCCGGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	82	92	+	11.7455	3.88e-05	0.292	TTGCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	82	92	+	11.7455	3.88e-05	0.292	TTGCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	82	92	+	11.7455	3.88e-05	0.292	TTGCCGGGAAG
SP2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	5	19	+	11.569	3.88e-05	0.0103	TCCCCTCCCTCAGGC
SP2	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	11	25	+	11.569	3.88e-05	0.0103	GCTCCGCCCCGCAGA
SP2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	64	78	+	11.569	3.88e-05	0.0103	CCTCCGCCCTTTGGG
SP2	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	70	84	+	11.569	3.88e-05	0.0103	CGCCCACCCTCCCTC
SP2	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	74	88	+	11.569	3.88e-05	0.0103	CGCCCTCCCCACTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	85	99	+	11.569	3.88e-05	0.0103	CCTCCTCCTCCCGCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	85	99	+	11.569	3.88e-05	0.0103	CCTCCTCCTCCCGCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	3	17	-	11.569	3.88e-05	0.0103	TCCCCTCCTCTTCTT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	3	17	-	11.569	3.88e-05	0.0103	TCCCCTCCTCTTCTT
SP2	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	27	41	-	11.569	3.88e-05	0.0103	CGCCCTCCCCACTCC
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	32	46	-	11.569	3.88e-05	0.0103	CGCCCACCCTCCCTC
SP2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	32	46	-	11.569	3.88e-05	0.0103	CGCCCACCCTCCCTC
SP2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	37	51	-	11.569	3.88e-05	0.0103	CCTCCGCCCTTTGGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	56	70	-	11.569	3.88e-05	0.0103	GCTCCTCCCCGCTGC
SP2	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	90	104	-	11.569	3.88e-05	0.0103	GCTCCGCCCCGCAGA
SP2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	96	110	-	11.569	3.88e-05	0.0103	TCCCCTCCCTCAGGC
Bcl6	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	13	26	-	11.7742	3.88e-05	0.411	ATTCTTGGAGAGGG
Bcl6	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	89	102	+	11.7742	3.88e-05	0.411	ATTCTTGGAGAGGG
Atf3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	15	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	15	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	15	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	15	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	26	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	26	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	28	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	29	36	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	44	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	37	44	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	39	46	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	75	82	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	93	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	86	93	+	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	9	16	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	9	16	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	9	16	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	9	16	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	9	16	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	22	29	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	33	40	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	33	40	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	35	42	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	51	58	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	67	74	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	71	78	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	78	85	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	79	86	-	12.3443	3.88e-05	0.368	GGTGACGT
Atf3	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	87	94	-	12.3443	3.88e-05	0.368	GGTGACGT
PHOX2A	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	4	14	+	12.14	3.88e-05	1	TTATTCAATTA
T	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	24	39	+	9.34615	3.88e-05	1	TGTCATCCACGTGTTA
T	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	24	39	+	9.34615	3.88e-05	1	TGTCATCCACGTGTTA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	4	21	-	-11.1974	3.88e-05	0.0378	GAGCGGGAGGAGGGAGGG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	82	92	+	12.1273	3.88e-05	0.0682	CCCCGCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	82	92	+	12.1273	3.88e-05	0.0682	CCCCGCAGGCG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	11	25	+	9.78689	3.88e-05	0.0531	GGTCACACCCACACG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	43	57	+	9.78689	3.88e-05	0.0531	TGCCAAGCCCAGCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	43	57	+	9.78689	3.88e-05	0.0531	TGCCAAGCCCAGCCT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	43	57	+	9.78689	3.88e-05	0.0531	TGCCAAGCCCAGCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	46	60	-	9.78689	3.88e-05	0.0531	GGTCACACCCACACG
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	16	28	-	11.8197	3.88e-05	0.359	GTGACTGTCACCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.1.0	95	107	-	11.8197	3.88e-05	0.359	CTGACTCTCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.0.0	95	107	-	11.8197	3.88e-05	0.359	CTGACTCTCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	79	91	+	11.8197	3.88e-05	0.359	TCGTCTCTCACTT
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	87	99	+	11.8197	3.88e-05	0.359	GTGACTGTCACCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	39	50	+	12.0909	3.88e-05	0.0548	CGCCCCGAGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	39	50	+	12.0909	3.88e-05	0.0548	CGCCCCGAGCCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	39	50	+	12.0909	3.88e-05	0.0548	CGCCCCGAGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	39	50	+	12.0909	3.88e-05	0.0548	CGCCCCGAGCCT
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	43	54	+	12.0909	3.88e-05	0.0548	CCCCGCCGGGCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	38	49	-	12.0909	3.88e-05	0.0548	TGCCCGCGGCCC
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	54	65	+	12.0909	3.88e-05	0.0548	AGCCTGAAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	45	56	-	12.0909	3.88e-05	0.0548	TCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	45	56	-	12.0909	3.88e-05	0.0548	TCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	45	56	-	12.0909	3.88e-05	0.0548	TCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	50	61	-	12.0909	3.88e-05	0.0548	AGCCTGAAGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	72	-	12.0909	3.88e-05	0.0548	CCCCGCCGGGCA
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	24	38	-	11.4545	3.88e-05	0.308	GGAGGGAGAAAGGGA
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	24	38	-	11.4545	3.88e-05	0.308	GGAGGGAGAAAGGGA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	+	11.4918	3.88e-05	0.0641	GGCCTCCCGGGCT
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	-	11.4918	3.88e-05	0.0641	GGCCTCCCGGGCT
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	19	29	+	12.3061	3.88e-05	0.292	GCTCCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.0	19	29	+	12.3061	3.88e-05	0.292	GCTCCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	19	29	+	12.3061	3.88e-05	0.292	GCTCCCAAGAA
HES7	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	40	51	-	5.25862	3.88e-05	0.189	CACCACGTGTCA
HES7	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	64	75	+	5.25862	3.88e-05	0.189	CACCACGTGTCA
KLF16	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	15	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	10	20	+	11.6034	3.88e-05	0.0157	ACCACGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	20	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	30	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	47	57	+	11.6034	3.88e-05	0.0157	ACCACGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	47	57	+	11.6034	3.88e-05	0.0157	ACCACGCCCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	61	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	83	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	99	+	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	9	19	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	9	19	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	9	19	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	9	19	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	16	26	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	18	28	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	18	28	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	32	42	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	42	52	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	42	52	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	58	68	-	11.6034	3.88e-05	0.0157	ACCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	59	69	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	85	95	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	95	105	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	97	107	-	11.6034	3.88e-05	0.0157	CGCACGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	100	110	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	100	110	-	11.6034	3.88e-05	0.0157	GCCCCTCCTCC
Ar	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	16	32	-	8.2931	3.88e-05	0.882	AAGTACAGGAAGTGCTG
RXRG	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	17	30	+	3.85106	3.88e-05	0.48	CAGGCTAGAGGTCA
RXRG	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	75	-	3.85106	3.88e-05	0.48	CAGGCTAGAGGTCA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	58	68	+	11.7377	3.88e-05	0.138	GAGCGGAAATT
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	58	68	+	11.7377	3.88e-05	0.138	GAGCGGAAATT
Myc	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	19	+	12.7818	3.88e-05	0.364	CCACGTGGCG
Myc	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	19	+	12.7818	3.88e-05	0.364	CCACGTGGCG
Myc	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	20	29	-	12.7818	3.88e-05	0.364	CCACGTGGCG
Myc	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	20	29	-	12.7818	3.88e-05	0.364	CCACGTGGCG
Myc	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	105	-	12.7818	3.88e-05	0.364	CCACGTGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	23	43	-	10.7143	3.88e-05	0.0145	AGGGGAGGGGCAGGTTGTGGT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	48	68	-	10.7143	3.88e-05	0.0145	AGGGGAAGGGCAGGGAAAAGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	19	39	+	10.7143	3.88e-05	0.0145	TGAGGTGGAGAGAAAAAGGGT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	47	67	+	10.7143	3.88e-05	0.0145	AGGGGAAGGGCAGGGAAAAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	65	85	+	10.7143	3.88e-05	0.0145	GGAGGCGGGGGAGCTGGACCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	65	85	+	10.7143	3.88e-05	0.0145	GGAGGCGGGGGAGCTGGACCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	70	90	+	10.7143	3.88e-05	0.0145	GGGGCAGGACAGAGTTGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	93	113	+	10.7143	3.88e-05	0.0145	GGAGACGACAGAGGATGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	93	113	+	10.7143	3.88e-05	0.0145	GGAGACGACAGAGGATGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	93	113	+	10.7143	3.88e-05	0.0145	GGAGACGACAGAGGATGAAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	93	113	+	10.7143	3.88e-05	0.0145	GGAGACGACAGAGGATGAAGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	-	12.1818	3.88e-05	0.174	AGTGAGTCACT
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	40	52	-	4.32653	3.88e-05	0.233	TGGGGATTCCGCA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	40	52	-	4.32653	3.88e-05	0.233	TGGGGATTCCGCA
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	107	-	12.8367	3.88e-05	0.158	GACAGCTGTTA
ELK4	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	110	-	12.2364	3.88e-05	0.0547	CCACTTCCGTC
Myod1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	54	+	12.7959	3.89e-05	0.143	AGCAGCTGGCCCC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	61	73	-	12.7959	3.89e-05	0.143	AGCAGCTGGCCCC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	61	73	-	12.7959	3.89e-05	0.143	AGCAGCTGGCCCC
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	61	73	-	12.7959	3.89e-05	0.143	AGCAGCTGGCCCC
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	61	73	-	12.7959	3.89e-05	0.143	AGCAGCTGGCCCC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	56	69	+	11.7746	3.89e-05	0.214	AAAATGAGGAGGAC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	56	69	+	11.7746	3.89e-05	0.214	AAAATGAGGAGGAC
SPIC	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	46	59	-	11.7746	3.89e-05	0.214	AAAATGAGGAGGAC
SPIC	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	74	87	-	11.7746	3.89e-05	0.214	AAAATGAGGAGGAC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	29	42	+	7.29592	3.89e-05	0.0701	GGGGCTGAGGAGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	39	52	+	7.29592	3.89e-05	0.0701	GGGGCTGAGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	39	52	+	7.29592	3.89e-05	0.0701	GGGGCTGAGGGAGG
Myog	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	8	18	-	12.8163	3.89e-05	0.137	GGCAGGTGGGG
GSC2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	4	13	-	11.2712	3.89e-05	1	ACTAATCCCA
ELK3	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	12.1207	3.89e-05	0.108	ACCGGAAGGT
EHF	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	5	16	+	11.4262	3.89e-05	0.118	TAGCAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	80	91	-	11.4262	3.89e-05	0.118	TAGCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	80	91	-	11.4262	3.89e-05	0.118	TAGCAGGAAGTC
Hes1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	1	10	-	10.3497	3.89e-05	0.0848	CCCACGCGCA
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	22	31	+	10.3497	3.89e-05	0.0848	CCCACGCGCA
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	22	31	+	10.3497	3.89e-05	0.0848	CCCACGCGCA
Hes1	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	36	45	-	10.3497	3.89e-05	0.0848	CCCACGCGCA
Hes1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	84	93	-	10.3497	3.89e-05	0.0848	CCCACGCGCA
Hes1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	105	114	+	10.3497	3.89e-05	0.0848	CCCACGCGCA
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	34	50	+	-13.4143	3.89e-05	0.94	TTCTTACCAAGAACTCC
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	17	27	-	12.0656	3.89e-05	0.0497	CAGGAAGTGCT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	49	59	+	12.0656	3.89e-05	0.0497	GCGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	47	57	-	12.0656	3.89e-05	0.0497	GCGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	47	57	-	12.0656	3.89e-05	0.0497	GCGGAAGCAGG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	57	67	-	12.0656	3.89e-05	0.0497	GCGGAAGCAGG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	63	73	-	12.0656	3.89e-05	0.0497	GCGGAAGCAGG
IRF9	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	48	62	+	-0.181818	3.89e-05	0.507	GGCGGAACTGAAAGC
IRF9	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	86	100	-	-0.181818	3.89e-05	0.507	GTCCAAAGTGAAAGT
YY2	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	95	105	+	12.1667	3.89e-05	0.269	TGCCGCCATGA
Mecom	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	8	21	+	10.0562	3.89e-05	1	ACCATAAGATAATT
Mecom	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	8	21	+	10.0562	3.89e-05	1	ACCATAAGATAATT
Mecom	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	8	21	+	10.0562	3.89e-05	1	ACCATAAGATAATT
Mecom	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	8	21	+	10.0562	3.89e-05	1	ACCATAAGATAATT
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	+	11.3333	3.89e-05	1	GGCATATGCT
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	+	11.3333	3.89e-05	1	GGCATATGCT
Sox6	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	12	21	-	12.8429	3.89e-05	0.754	GCTTTGTCCT
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	59	75	+	10.9592	3.89e-05	0.338	AGGTCACTCGAGGCTCA
KLF14	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	11	24	+	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	17	30	+	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	7	20	-	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	7	20	-	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	41	54	+	10.2069	3.89e-05	0.029	CGCTCCGCCCACGT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	29	42	-	10.2069	3.89e-05	0.029	ATACCCGCCCACTT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	58	71	-	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	85	98	-	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
KLF14	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	91	104	-	10.2069	3.89e-05	0.029	GCCCCCGCCCCCGC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	19	28	-	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	19	28	-	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	44	53	+	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	44	53	+	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	57	66	+	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	57	66	+	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	62	71	+	11.7143	3.89e-05	0.107	ACCACATGAC
TFE3	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	11.7143	3.89e-05	0.107	GCCACGTGGC
TFE3	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	11.7143	3.89e-05	0.107	GCCACGTGGC
HOXB13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	3	12	+	12.2364	3.89e-05	1	CCCATAAAAG
HOXB13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	3	12	+	12.2364	3.89e-05	1	CCCATAAAAG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	6	16	+	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	6	16	+	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	6	16	+	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	6	16	+	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	31	41	-	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	74	84	+	12.2909	3.89e-05	0.0515	AGCCCCGGGCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	89	103	-	11.6667	3.89e-05	0.168	CTTGGGCAGAGCTCA
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	-	11.0455	3.89e-05	0.233	AGTTACTATGTCAACA
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	77	90	+	9.95455	3.89e-05	0.253	TCAACACGTCAGCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	25	38	-	9.95455	3.89e-05	0.253	TCAACACGTCAGCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	25	38	-	9.95455	3.89e-05	0.253	TCAACACGTCAGCA
RUNX1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	23	33	-	12.069	3.89e-05	0.227	CGCTGTGGCTA
SP4	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	7	23	+	5.8	3.9e-05	0.0228	CTCTCCCCGCCCCCGGA
SP4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	8	24	+	5.8	3.9e-05	0.0228	AAAGCTCCGCCCCGCAG
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	16	32	+	5.8	3.9e-05	0.0228	GGCGCCCCGCCCCAGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	24	40	-	5.8	3.9e-05	0.0228	ACGCCCCCGCCCCCCAA
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	42	58	+	5.8	3.9e-05	0.0228	GGCGCCCCGCCCCAGCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	31	47	-	5.8	3.9e-05	0.0228	CCTGCCCCCCCCCCCCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	59	75	+	5.8	3.9e-05	0.0228	ACGCCCCCGCCCCCCAA
SP4	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	57	73	-	5.8	3.9e-05	0.0228	GGCGCCCCGCCCCAGCC
SP4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	83	99	-	5.8	3.9e-05	0.0228	GGCGCCCCGCCCCAGCC
SP4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	91	107	-	5.8	3.9e-05	0.0228	AAAGCTCCGCCCCGCAG
Arx	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	90	106	-	11.9405	3.9e-05	1	CTCAACTAATTAGACCC
NR2C2	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	36	50	+	10.6286	3.9e-05	0.112	GAGGGGGAGGGGCCG
NR2C2	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	65	79	-	10.6286	3.9e-05	0.112	GAGGGGGAGGGGCCG
ALX3	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	55	-	10.6535	3.9e-05	1	TTTAATTAAC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	2	16	-	11.4242	3.9e-05	0.0942	GCATCGCGAGACTCC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	50	64	-	11.4242	3.9e-05	0.0942	GCATCGCGAGACTCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	70	84	-	11.4242	3.9e-05	0.0942	CTCTCGCGGTTCGCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	70	84	-	11.4242	3.9e-05	0.0942	CTCTCGCGGTTCGCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	11	25	+	11.4242	3.9e-05	0.0942	CCCCCGCGCGGCCCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	11	25	+	11.4242	3.9e-05	0.0942	CCCCCGCGCGGCCCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	51	65	+	11.4242	3.9e-05	0.0942	GCATCGCGAGACTCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	8	25	+	-11.2105	3.9e-05	0.0378	AAGAGGAGTGGAGGAGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	12	29	+	-11.2105	3.9e-05	0.0378	GGAAGGGAAGAATGACTG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	24	41	+	-11.2105	3.9e-05	0.0378	GGAAGGGAAGAATGACTG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	42	59	+	-11.2105	3.9e-05	0.0378	GGAAGGGAAGAATGACTG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	56	73	-	-11.2105	3.9e-05	0.0378	GGAAGGGAAGAATGACTG
EGR4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	48	63	-	11.2727	3.9e-05	0.0374	ACGCGCCCGCGCACGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	51	66	-	11.2727	3.9e-05	0.0374	GCCCGCCCGCCCCACC
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	32	50	-	11.5645	3.9e-05	0.671	TGCACGTAAGTTCCCTTTT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	-	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	+	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	+	12.1538	3.9e-05	0.0703	CGCCGCGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	+	11.623	3.9e-05	0.0586	GGCCCGCGAGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	98	110	-	11.623	3.9e-05	0.0586	GGCCACCCGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	98	110	-	11.623	3.9e-05	0.0586	GGCCACCCGGGCA
Stat4	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	13	26	+	12.3103	3.9e-05	0.24	CTGCTGGGAACTAG
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	74	87	-	12.3103	3.9e-05	0.24	GTGCCAGGAACGGA
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.0.0	74	87	-	12.3103	3.9e-05	0.24	GTGCCAGGAACGGA
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	61	71	-	12.3265	3.9e-05	0.112	GTCACGTGGTT
MEOX1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	11.6	3.9e-05	1	GGTAATTAAG
MEOX1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	11.6	3.9e-05	1	GGTAATTAAG
TEAD4	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	77	86	+	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	83	92	+	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	26	35	-	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	29	38	-	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	62	71	-	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	67	76	-	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	73	82	-	11.7419	3.9e-05	0.719	CACATTCCGG
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	73	82	-	11.7419	3.9e-05	0.719	CACATTCCGG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	14	23	+	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	19	28	+	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	14	23	-	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	19	28	-	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	30	39	+	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	33	42	+	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	36	45	+	10.0968	3.9e-05	0.0452	AGCGCGTGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	30	39	-	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	33	42	-	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	36	45	-	10.0968	3.9e-05	0.0452	CGCACGCGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	58	67	+	10.0968	3.9e-05	0.0452	AGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	58	67	+	10.0968	3.9e-05	0.0452	AGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	58	67	-	10.0968	3.9e-05	0.0452	CGCACGCGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	58	67	-	10.0968	3.9e-05	0.0452	CGCACGCGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	73	82	+	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	73	82	-	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	85	94	+	10.0968	3.9e-05	0.0452	CGCACGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	87	96	+	10.0968	3.9e-05	0.0452	AGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	92	101	+	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	85	94	-	10.0968	3.9e-05	0.0452	AGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	87	96	-	10.0968	3.9e-05	0.0452	CGCGCGTGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	92	101	-	10.0968	3.9e-05	0.0452	AGCACGCGCG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	94	107	-	5.68182	3.9e-05	0.379	CACCCCACACCAGG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	94	107	-	5.68182	3.9e-05	0.379	CACCCCACACCAGG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	94	107	-	5.68182	3.9e-05	0.379	CACCCCACACCAGG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	94	107	-	5.68182	3.9e-05	0.379	CACCCCACACCAGG
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	27	39	+	11.7959	3.9e-05	0.301	CACGTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	27	39	+	11.7959	3.9e-05	0.301	CACGTGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	27	39	+	11.7959	3.9e-05	0.301	CACGTGACGTCAT
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	59	72	+	8.22368	3.9e-05	0.56	TCACCAGCTGCTCA
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	59	72	+	8.22368	3.9e-05	0.56	TCACCAGCTGCTCA
ATF7	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	45	58	-	8.98571	3.9e-05	0.151	AAGTGACGTCAGGT
ATF7	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	79	92	-	8.98571	3.9e-05	0.151	AAGTGACGTCAGGT
ATF7	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	23	36	+	8.98571	3.9e-05	0.151	AAGTGACGTCAGGT
ATF7	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	57	70	+	8.98571	3.9e-05	0.151	AAGTGACGTCAGGT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	14	24	+	11.8374	3.9e-05	0.0173	CCCACTCCCAG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	14	24	+	11.8374	3.9e-05	0.0173	CCCACTCCCAG
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	27	37	+	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	28	38	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	28	38	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	78	88	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	78	88	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	78	88	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	78	88	-	12.0492	3.9e-05	0.0497	GCGGAAGCTGC
ELF4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	58	-	10.4918	3.9e-05	0.0972	GAACCGGAAGCC
IRF7	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	48	61	-	10.0484	3.9e-05	0.686	CCGGAAATGAAACT
STAT3	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	39	49	+	12.0612	3.9e-05	0.232	ATGCTTGGAAA
Mecom	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	44	57	+	10.0449	3.9e-05	1	CTGATAGGATAACG
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	49	62	+	2.83636	3.9e-05	0.47	AAGGTCACAGGTCT
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	49	62	+	2.83636	3.9e-05	0.47	AAGGTCACAGGTCT
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	60	-	3.82979	3.9e-05	0.48	CGGAGCAAAGGTCG
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	60	-	3.82979	3.9e-05	0.48	CGGAGCAAAGGTCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	60	-	3.82979	3.9e-05	0.48	CGGAGCAAAGGTCG
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	60	-	3.82979	3.9e-05	0.48	CGGAGCAAAGGTCG
HEY2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	11.7586	3.9e-05	0.16	GACACGTGAC
HEY2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	11.7586	3.9e-05	0.16	GACACGTGAC
HEY2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	11.7586	3.9e-05	0.16	GACACGTGAC
HEY2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	11.7586	3.9e-05	0.16	GACACGTGAC
HEY2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	11.7586	3.9e-05	0.16	GACACGTGAC
HEY2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	11.7586	3.9e-05	0.16	GACACGTGAC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	4	17	+	11.9697	3.91e-05	0.048	GAGTGCGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	4	17	+	11.9697	3.91e-05	0.048	GAGTGCGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	16	29	+	11.9697	3.91e-05	0.048	GAGTGCGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	36	49	+	11.9697	3.91e-05	0.048	GAGTGCGCGGCCTT
Zfx	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	66	79	-	11.9697	3.91e-05	0.048	GAGTGCGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	85	98	+	11.9697	3.91e-05	0.048	GGGGATCAGGCCTG
Klf12	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	15	29	-	9.77049	3.91e-05	0.0531	AGCCCCGCCCCCCGC
Klf12	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	29	43	+	9.77049	3.91e-05	0.0531	CGCCCCGCCCCCTTT
Klf12	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	54	68	+	9.77049	3.91e-05	0.0531	AGCCCCGCCCCCCGC
Klf12	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	47	61	-	9.77049	3.91e-05	0.0531	AGCCCCGCCCCCCGC
Klf12	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	86	100	+	9.77049	3.91e-05	0.0531	AGCCCCGCCCCCCGC
SPI1	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	47	60	+	4.94545	3.91e-05	0.159	AATAAAGGGAAGTC
SREBF1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	12.4756	3.91e-05	0.472	GTCACGCGAC
SREBF1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	12.4756	3.91e-05	0.472	GTCACGCGAC
ZEB1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	10	18	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	21	29	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	21	29	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	59	67	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	68	76	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	68	76	+	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	24	32	-	12.8364	3.91e-05	0.344	GCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	24	32	-	12.8364	3.91e-05	0.344	GCCCACCTG
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	90	98	-	12.0769	3.91e-05	1	ACCACTTAT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	5	24	-	5.48624	3.91e-05	0.0522	CCAGACCCCCCCCCCAGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	5	24	-	5.48624	3.91e-05	0.0522	CCAGACCCCCCCCCCAGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	71	90	-	5.48624	3.91e-05	0.0522	CCACCAACAACAACATTCGG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	71	90	-	5.48624	3.91e-05	0.0522	CCACCAACAACAACATTCGG
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	19	31	-	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	84	96	+	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	84	96	+	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	84	96	+	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	84	96	+	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	84	96	+	9.7931	3.91e-05	0.134	GAGCAGGAAGTCG
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	34	45	-	11.7586	3.91e-05	0.365	GCGACCCCCTGC
JUND	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	-	12.0638	3.91e-05	0.191	GGTGACTCAGA
JUND	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	-	12.0638	3.91e-05	0.191	GGTGACTCAGA
ESR1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	58	74	+	2.04545	3.91e-05	0.514	CGGGGCGTGGTGGCCTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	43	-	10.5636	3.91e-05	0.0999	TGTCCGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	43	-	10.5636	3.91e-05	0.0999	TGTCCGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	43	-	10.5636	3.91e-05	0.0999	TGTCCGGAAGTA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	43	-	10.5636	3.91e-05	0.0999	TGTCCGGAAGTA
MIXL1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	55	-	10.2083	3.91e-05	1	TTTAATTAAC
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	76	87	-	2.40385	3.91e-05	0.837	TGACGTCTGTAA
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	76	87	-	2.40385	3.91e-05	0.837	TGACGTCTGTAA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	76	87	-	2.40385	3.91e-05	0.837	TGACGTCTGTAA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	76	87	-	2.40385	3.91e-05	0.837	TGACGTCTGTAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	11	25	+	11.5517	3.91e-05	0.0104	GCCCTGCCCTCTTGG
SP2	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	15	29	+	11.5517	3.91e-05	0.0104	GCACCGCCCCACGTC
SP2	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	46	60	+	11.5517	3.91e-05	0.0104	GATCCGCCTTCTCCC
SP2	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	64	78	+	11.5517	3.91e-05	0.0104	GATCCGCCTTCTCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	80	+	11.5517	3.91e-05	0.0104	ACCCCGCCCTCAGGA
SP2	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	97	111	+	11.5517	3.91e-05	0.0104	GATCCGCCTTCTCCC
SP2	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	4	18	-	11.5517	3.91e-05	0.0104	GATCCGCCTTCTCCC
SP2	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	37	51	-	11.5517	3.91e-05	0.0104	GATCCGCCTTCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	58	72	-	11.5517	3.91e-05	0.0104	CCACCTCCCCTTCCC
E2F4	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	39	49	-	12.2069	3.91e-05	0.0458	AAGCGGGAAGG
POU2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	14	26	-	11.8966	3.91e-05	1	GAGATTTACATAT
POU2F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	14	26	-	11.8966	3.91e-05	1	GAGATTTACATAT
BATF3	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	8	21	+	3.07576	3.91e-05	0.157	CTCTGACGTCACTG
BATF3	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	89	102	+	3.07576	3.91e-05	0.157	CTCTGACGTCACTG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	13	26	-	3.07576	3.91e-05	0.157	CTCTGACGTCACTG
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	13	26	-	3.07576	3.91e-05	0.157	CTCTGACGTCACTG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	42	55	-	3.07576	3.91e-05	0.157	ATATGACGTCAGGT
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	42	55	-	3.07576	3.91e-05	0.157	ATATGACGTCAGGT
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	42	55	-	3.07576	3.91e-05	0.157	ATATGACGTCAGGT
BATF3	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	94	107	-	3.07576	3.91e-05	0.157	CTCTGACGTCACTG
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	72	82	-	12.4286	3.91e-05	0.788	ATTTCAAAATA
Mitf	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	4	13	+	11.4286	3.91e-05	0.223	AGTCACGCGC
Mitf	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	30	39	+	11.4286	3.91e-05	0.223	AGTCACGCGC
Mitf	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	48	57	-	11.4286	3.91e-05	0.223	AGTCACGCGC
Mitf	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	58	67	+	11.4286	3.91e-05	0.223	AGTCACGCGC
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	76	96	-	10.2903	3.91e-05	0.165	GCGTAGTTTCTCTTCCTCCCA
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	76	96	-	10.2903	3.91e-05	0.165	GCGTAGTTTCTCTTCCTCCCA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	16	27	+	10.3091	3.91e-05	0.178	ATTGACGTAACC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	52	63	-	10.3091	3.91e-05	0.178	ATTGACGTAACC
EGR1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	18	+	11.4038	3.91e-05	0.018	GCCCCTCCTCCTGG
EGR1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	20	33	+	11.4038	3.91e-05	0.018	CTTCCGCTTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	21	34	-	11.4038	3.91e-05	0.018	GTTACGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	25	38	-	11.4038	3.91e-05	0.018	CCGCCTCCCTCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	25	38	-	11.4038	3.91e-05	0.018	CCGCCTCCCTCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	39	52	-	11.4038	3.91e-05	0.018	TCCCCACCCTCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	77	90	+	11.4038	3.91e-05	0.018	CCGCCTCCCTCGGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	65	78	-	11.4038	3.91e-05	0.018	GTTCCTCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	79	92	+	11.4038	3.91e-05	0.018	GTTACGCCGCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	82	95	-	11.4038	3.91e-05	0.018	CTTCCGCTTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	97	110	-	11.4038	3.91e-05	0.018	GCCCCTCCTCCTGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	97	110	-	11.4038	3.91e-05	0.018	GCCCCTCCTCCTGG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	85	98	-	9.60656	3.91e-05	0.18	GCCCCCACATGGCG
Sox3	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	10	19	-	12.5862	3.91e-05	0.659	CCATTGTTCT
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	96	105	+	12.5862	3.91e-05	0.659	CCATTGTTCT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	96	105	+	12.5862	3.91e-05	0.659	CCATTGTTCT
ZIC4	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	15	29	+	11.3818	3.91e-05	0.109	CGCTTCCCGCTGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	32	46	-	11.3818	3.91e-05	0.109	TGACCCCCGTCGCTC
ZIC4	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	69	83	+	11.3818	3.91e-05	0.109	TGACCCCCGTCGCTC
ZIC4	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	100	114	+	11.3818	3.91e-05	0.109	CGCCGCCTGCCGGGT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	16	26	-	7.53061	3.91e-05	0.248	TGTGAGTCACC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	35	45	+	7.53061	3.91e-05	0.248	TGTGAGTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	30	40	-	7.53061	3.91e-05	0.248	TGTGAGTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	30	40	-	7.53061	3.91e-05	0.248	TGTGAGTCACC
NFE2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	-	7.53061	3.91e-05	0.248	AGTGACTCACA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	-	7.53061	3.91e-05	0.248	AGTGACTCACA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	-	11.9796	3.91e-05	0.0857	TCCCCGGAGGCT
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	+	11.9796	3.91e-05	0.0857	TCCCCGGAGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	84	95	-	11.9796	3.91e-05	0.0857	GGCCCAGGGGCA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	47	60	-	9.93939	3.92e-05	0.253	CGGCCACGTGAGGA
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	47	60	-	9.93939	3.92e-05	0.253	CGGCCACGTGAGGA
Gmeb1	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	78	94	-	11.1711	3.92e-05	0.614	CCGGGGGCGCACGGCGG
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	1	17	+	5.78182	3.92e-05	0.0228	CGAGCCCCGGCCCCGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	39	55	-	5.78182	3.92e-05	0.0228	CGAGCCCCGGCCCCGCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	66	82	+	5.78182	3.92e-05	0.0228	CAGCCCCCGCCTCCCTG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	44	54	-	12.4138	3.92e-05	0.0529	GGGTGGGAAAC
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	44	54	-	12.4138	3.92e-05	0.0529	GGGTGGGAAAC
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	75	85	+	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	75	85	+	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	97	107	-	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	97	107	-	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	97	107	-	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	97	107	-	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	97	107	-	12.4138	3.92e-05	0.0529	GGGTGGGAGAG
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	27	36	+	11.2264	3.92e-05	1	CAATCAATTA
PAX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	27	36	+	11.2264	3.92e-05	1	CAATCAATTA
PAX3	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	95	104	+	11.2264	3.92e-05	1	CAATCAATTA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	50	68	+	11.5	3.92e-05	0.147	CTGCGCAGGCGCGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	50	68	+	11.5	3.92e-05	0.147	CTGCGCAGGCGCGCGGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	47	65	-	11.5	3.92e-05	0.147	CTGCGCAGGCGCGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	5	14	+	11.9286	3.92e-05	0.0174	TGGGCGCGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	11	20	+	11.9286	3.92e-05	0.0174	TGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	32	41	+	11.9286	3.92e-05	0.0174	TGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	32	41	+	11.9286	3.92e-05	0.0174	TGGGCGCGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	71	80	-	11.9286	3.92e-05	0.0174	TGGGCGCGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	93	102	-	11.9286	3.92e-05	0.0174	TGGGCGCGGC
NFYA	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	20	37	-	10.4756	3.92e-05	0.132	CGCTCTCCCATTGGCTGG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	18	31	+	7.97872	3.92e-05	0.0959	CACCCCCTGCAGGC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	63	76	-	7.97872	3.92e-05	0.0959	CCCCTCCCGCGGCT
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	63	76	-	7.97872	3.92e-05	0.0959	CCCCTCCCGCGGCT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	63	76	-	7.97872	3.92e-05	0.0959	CCCCTCCCGCGGCT
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	63	76	-	7.97872	3.92e-05	0.0959	CCCCTCCCGCGGCT
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	20	29	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	32	41	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	32	41	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	32	41	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	77	86	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	77	86	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	77	86	-	12.2885	3.92e-05	0.439	CAACCACAAC
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	77	86	-	12.2885	3.92e-05	0.439	CAACCACAAC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	17	36	-	5.47706	3.92e-05	0.0522	GCCCACAGCACCAACAACAC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	26	40	-	8.10345	3.92e-05	0.0357	CACCCCCCCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	95	109	-	8.10345	3.92e-05	0.0357	GCCCGCCGCCGCTCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	95	109	-	8.10345	3.92e-05	0.0357	GCCCGCCGCCGCTCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	7	18	+	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	7	18	+	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	6	17	-	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	24	35	+	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	48	59	+	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	56	67	-	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	94	105	+	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	97	108	-	11.7368	3.92e-05	0.027	CCCCCGCCCGCC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	22	35	+	11.7606	3.92e-05	0.214	GGCAAGGGGAAGTG
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	22	35	+	11.7606	3.92e-05	0.214	GGCAAGGGGAAGTG
ATF4	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	10	22	+	11.0328	3.92e-05	0.518	AACTGATGAAATA
ATF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	93	105	-	11.0328	3.92e-05	0.518	AACTGATGAAATA
ATF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	93	105	-	11.0328	3.92e-05	0.518	AACTGATGAAATA
EHF	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	24	35	+	11.4098	3.92e-05	0.118	TAACAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	34	45	+	11.4098	3.92e-05	0.118	TAACAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	34	45	+	11.4098	3.92e-05	0.118	TAACAGGAAGTT
EHF	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	81	-	11.4098	3.92e-05	0.118	TAACAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	91	-	11.4098	3.92e-05	0.118	TAACAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	91	-	11.4098	3.92e-05	0.118	TAACAGGAAGTT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	+	12.4255	3.92e-05	0.211	GCTGAGTCACA
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	+	12.4255	3.92e-05	0.211	GCTGAGTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	+	12.4255	3.92e-05	0.211	GCTGAGTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	+	12.4255	3.92e-05	0.211	GCTGAGTCACA
PRDM1	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	1	15	+	11.4364	3.92e-05	0.308	AAAAAGAGAGAGAGA
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	58	69	+	12.0778	3.92e-05	1	TTGTGCAACCCC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	58	69	+	12.0778	3.92e-05	1	TTGTGCAACCCC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	12	23	-	12.0778	3.92e-05	1	TTGTGCAACCCC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	12	23	-	12.0778	3.92e-05	1	TTGTGCAACCCC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	12	23	-	12.0778	3.92e-05	1	TTGTGCAACCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	67	80	+	10.1897	3.92e-05	0.0291	GCTCGCGCCCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	1	11	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	5	15	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	4	14	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	5	15	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	18	28	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	9	19	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	9	19	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	24	34	-	12.0385	3.92e-05	0.0118	TCCCCTCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	34	44	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	34	44	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	36	46	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	26	36	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	36	46	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	37	47	+	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	28	38	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	28	38	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	29	39	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	35	45	-	12.0385	3.92e-05	0.0118	TCCCCTCCTTC
SP1	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	46	56	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	37	47	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	37	47	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	37	47	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	37	47	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	39	49	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	51	61	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	51	61	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	42	52	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	42	52	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	54	64	+	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	56	66	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	56	66	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	59	69	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	59	69	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	76	86	+	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	68	78	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	68	78	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	68	78	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	68	78	-	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	78	88	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	78	88	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	78	88	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	78	88	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	79	89	+	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	79	89	+	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	79	89	+	12.0385	3.92e-05	0.0118	CCTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	70	80	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	70	80	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	70	80	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	70	80	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	71	81	-	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	71	81	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	90	100	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	91	101	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	101	111	+	12.0385	3.92e-05	0.0118	TTCCCTCCCTC
SP1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	104	114	-	12.0385	3.92e-05	0.0118	GTTCCTCCTCC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	2	11	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	2	11	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	9	18	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	40	49	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	31	40	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	33	42	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	63	72	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	73	82	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	66	75	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	66	75	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	97	106	+	12.0429	3.92e-05	0.0915	GTCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	104	113	-	12.0429	3.92e-05	0.0915	GTCGGAAGTG
NRF1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	2	12	+	11.3455	3.92e-05	0.0157	GCGGCTGCCCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	8	18	+	11.3455	3.92e-05	0.0157	GCGCAGGCCCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	33	43	+	11.3455	3.92e-05	0.0157	GCGCAGGCCCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	36	46	-	11.3455	3.92e-05	0.0157	GCGCAGGCCCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	72	82	-	11.3455	3.92e-05	0.0157	GCGCAGGCCCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	97	107	-	11.3455	3.92e-05	0.0157	GCGCAGGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	103	113	-	11.3455	3.92e-05	0.0157	GCGGCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	103	113	-	11.3455	3.92e-05	0.0157	GCGGCTGCCCC
SRF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	41	56	-	6.91803	3.92e-05	0.708	CTTCCTTATTTGGTCT
SRF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	41	56	-	6.91803	3.92e-05	0.708	CTTCCTTATTTGGTCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	16	27	+	11.9355	3.92e-05	0.281	AGGACCACCAAT
ZBTB7C	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	37	48	+	11.9355	3.92e-05	0.281	ACGCCCACCCCC
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	67	78	-	11.9355	3.92e-05	0.281	ACGCCCACCCCC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	30	39	-	12.1455	3.92e-05	0.721	ATTACACAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	30	39	-	12.1455	3.92e-05	0.721	ATTACACAAT
CEBPE	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	39	48	+	12.1455	3.92e-05	0.721	CTGGCGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	40	49	+	12.1455	3.92e-05	0.721	ATTACACAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	40	49	+	12.1455	3.92e-05	0.721	ATTACACAAT
Znf423	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	14	28	+	7.38202	3.92e-05	0.238	CGCGCCCTAGGGGCC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	82	96	-	7.38202	3.92e-05	0.238	GGAACCTGTGGTTGA
NR2C2	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	3	17	-	10.6143	3.92e-05	0.112	CGGGAGTAAAGGTCG
NR2C2	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	98	112	+	10.6143	3.92e-05	0.112	CGGGAGTAAAGGTCG
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	5	19	+	10.9394	3.92e-05	0.263	CGACTTGACACAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	13	27	-	10.9394	3.92e-05	0.263	CCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	13	27	-	10.9394	3.92e-05	0.263	CCACATGACCCAGCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	45	59	+	10.9394	3.92e-05	0.263	CCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	45	59	+	10.9394	3.92e-05	0.263	CCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	96	110	-	10.9394	3.92e-05	0.263	CGACTTGACACAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	96	110	-	10.9394	3.92e-05	0.263	CGACTTGACACAGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	96	110	-	10.9394	3.92e-05	0.263	CGACTTGACACAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	96	110	-	10.9394	3.92e-05	0.263	CGACTTGACACAGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	33	53	-	10.6939	3.92e-05	0.0146	AGGAGAGAGGAAGAGGAAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	33	53	-	10.6939	3.92e-05	0.0146	AGGAGAGAGGAAGAGGAAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	52	72	-	10.6939	3.92e-05	0.0146	TGGGGAGCGGAGCGGGGGGAT
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	74	94	-	10.6939	3.92e-05	0.0146	GGGGACGGCAGGAAGGAGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	21	41	+	10.6939	3.92e-05	0.0146	GGGGACGGCAGGAAGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	45	65	+	10.6939	3.92e-05	0.0146	AGGAGAGAGGAAGAGGAAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	45	65	+	10.6939	3.92e-05	0.0146	AGGAGAGAGGAAGAGGAAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	62	82	+	10.6939	3.92e-05	0.0146	AGGAGAGAGGAAGAGGAAGGA
Rarg(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	15	31	+	-3.12727	3.92e-05	1	GGGTTCATGGGGGTTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	81	93	+	9.77586	3.93e-05	0.134	GACCAGGAAGCGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	81	93	+	9.77586	3.93e-05	0.134	GACCAGGAAGCGG
TP73	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	90	107	+	9.96154	3.93e-05	0.649	GCCCAGCCAGGACACGCA
PLAG1	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	20	33	-	7.26531	3.93e-05	0.0701	GAGGCGAACGGGAG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	82	95	+	7.26531	3.93e-05	0.0701	GAGGCGAACGGGAG
BHLHE22	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	+	12.1818	3.93e-05	1	GGCATATGTC
Ascl2	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	12.2429	3.93e-05	0.187	AACAGCTGTG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	12.2429	3.93e-05	0.187	AACAGCTGTG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	12.2429	3.93e-05	0.187	AACAGCTGTG
RELA	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	5	14	+	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	6	15	-	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	6	15	-	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	18	27	+	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	27	36	+	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	40	49	+	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	69	78	+	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	69	78	-	11.6327	3.93e-05	0.213	GGGAAATCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	79	88	-	11.6327	3.93e-05	0.213	GGGAAATCCC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	96	110	-	11.4091	3.93e-05	0.0942	GCCTCGCGACCCTCC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	5	19	+	11.4091	3.93e-05	0.0942	GCCTCGCGACCCTCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	5	19	+	11.4091	3.93e-05	0.0942	GCCTCGCGACCCTCC
ESRRB	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	104	114	+	9.86207	3.93e-05	1	GGAAGGTCACA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	+	12.0909	3.93e-05	0.0682	GGCCGGAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	+	12.0909	3.93e-05	0.0682	GGCCGGAGGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	-	12.0909	3.93e-05	0.0682	CGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	-	12.0909	3.93e-05	0.0682	CGCCGGCGGCG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.1.1	8	23	-	3.67241	3.93e-05	0.299	CACCCACACTCCATTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.1.0	8	23	-	3.67241	3.93e-05	0.299	CACCCACACTCCATTG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	8	23	-	3.67241	3.93e-05	0.299	CACCCACACTCCATTG
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	-	11.459	3.93e-05	0.0641	CGCCCGGCAGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	+	11.459	3.93e-05	0.0641	CGCCCGGCAGGCG
SP8	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	6	17	+	11.7237	3.93e-05	0.027	GCCACCCCTCCA
SP8	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	32	43	+	11.7237	3.93e-05	0.027	GCCACCCCTCCA
SP8	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	63	74	+	11.7237	3.93e-05	0.027	ACCACACCCAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	98	109	-	11.7237	3.93e-05	0.027	GCCACCCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	98	109	-	11.7237	3.93e-05	0.027	GCCACCCCTCCA
CREB3	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	2	15	+	10.9429	3.93e-05	0.236	ATTCCACGTGATAC
CREB3	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	67	80	+	10.9429	3.93e-05	0.236	GGGCGACGTGATCA
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	55	69	+	11.4032	3.93e-05	1	CTTTAAAATGCAACT
MAFF	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	50	67	-	11.8444	3.93e-05	0.965	AATGACTCAGCAGTAGGA
USF1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	83	93	-	12.0612	3.93e-05	0.154	GCCATGTGATA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	29	46	+	-11.2368	3.93e-05	0.038	GAACGGGAGGAGGGGAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	69	86	-	-11.2368	3.93e-05	0.038	GAACGGGAGGAGGGGAGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	23	37	-	11.8462	3.93e-05	0.131	GAGGCAGCCAATGAA
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	23	37	-	11.8462	3.93e-05	0.131	GAGGCAGCCAATGAA
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	23	37	-	11.8462	3.93e-05	0.131	GAGGCAGCCAATGAA
NFYB	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	78	92	+	11.8462	3.93e-05	0.131	GAGGCAGCCAATGAA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	55	67	+	4.26531	3.93e-05	0.233	AGGGGAGTCCCAG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	58	70	+	4.26531	3.93e-05	0.233	GGGGAGTTTCCCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	47	59	-	11.6066	3.93e-05	0.0586	AGCCTCAAGGGCT
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	-	12.697	3.93e-05	0.22	ATCACGTGGA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	85	98	+	11.9545	3.93e-05	0.0483	CGGGATCAGGCCTG
SP1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	14	24	-	12.0192	3.93e-05	0.0118	GCCCCTCCCAA
SP1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	28	38	-	12.0192	3.93e-05	0.0118	GCCCCTCCCAA
SP1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	69	79	+	12.0192	3.93e-05	0.0118	GCCCCTCCCAA
TAL1::TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	95	106	+	12.0449	3.93e-05	1	TGACCAGCTGGG
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	95	106	+	12.0449	3.93e-05	1	TGACCAGCTGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	15	30	+	11.2545	3.93e-05	0.0374	CCCCGCCCTCCCCCGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	33	48	+	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	33	48	+	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
EGR4	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	23	38	-	11.2545	3.93e-05	0.0374	CAACGCACGCGCACTC
EGR4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	38	53	+	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
EGR4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	42	57	+	11.2545	3.93e-05	0.0374	GCCCGCCCGCCCGACC
EGR4	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	43	58	+	11.2545	3.93e-05	0.0374	CAACGCACGCGCACTC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	51	66	+	11.2545	3.93e-05	0.0374	CCCCGCCCTCCCCCGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	51	66	+	11.2545	3.93e-05	0.0374	CCCCGCCCTCCCCCGC
EGR4	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	44	59	-	11.2545	3.93e-05	0.0374	TGCTGCCCACGCCTGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	55	70	-	11.2545	3.93e-05	0.0374	CCCCGCCCTCCCCCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	55	70	-	11.2545	3.93e-05	0.0374	CCCCGCCCTCCCCCGC
EGR4	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	57	72	-	11.2545	3.93e-05	0.0374	CAACGCACGCGCACTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	62	77	-	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	62	77	-	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
EGR4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	67	82	-	11.2545	3.93e-05	0.0374	CCCCACCCACCCGACC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	23	33	-	12.8163	3.94e-05	0.158	AACAGGTGGTG
FIGLA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	100	109	-	12.1552	3.94e-05	0.859	TCCACCTGGC
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	47	60	-	4.81707	3.94e-05	0.408	CGGAGCAAAGGTCG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	47	60	-	4.81707	3.94e-05	0.408	CGGAGCAAAGGTCG
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	47	60	-	4.81707	3.94e-05	0.408	CGGAGCAAAGGTCG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	47	60	-	4.81707	3.94e-05	0.408	CGGAGCAAAGGTCG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	30	41	+	10.5455	3.94e-05	0.0999	ACCCCGGAAACC
IRF1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	56	76	+	10.2742	3.94e-05	0.165	GTTGCCTTTTTTTTTTTTTTT
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	40	50	+	11.3273	3.94e-05	0.0157	GCGCGGGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	40	50	+	11.3273	3.94e-05	0.0157	GCGCGGGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	40	50	+	11.3273	3.94e-05	0.0157	GCGCGGGTGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	94	104	+	11.3273	3.94e-05	0.0157	GCGCGGGTGCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	12	31	+	5.45872	3.94e-05	0.0522	CCCCGACACACCTCCAGTCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	-	12.1346	3.94e-05	0.0703	CGCCGGGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	-	12.1346	3.94e-05	0.0703	CGCCGGGGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	-	12.1346	3.94e-05	0.0703	CGCCGGGGGCT
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	+	12.1346	3.94e-05	0.0703	AGCCGCGGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	93	103	+	12.1346	3.94e-05	0.0703	CCCCCCAGGCA
MNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	10.8955	3.94e-05	1	AGTAATTAAG
ETS1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	12.1724	3.94e-05	0.0972	CCCGGAAGTA
ETS1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	12.1724	3.94e-05	0.0972	CCCGGAAGTA
MAFG	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	31	51	+	10.8367	3.94e-05	0.929	GAAACGCGGATTCAGCGGAGC
MAFG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	64	84	-	10.8367	3.94e-05	0.929	GAAACGCGGATTCAGCGGAGC
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	64	84	-	10.8367	3.94e-05	0.929	GAAACGCGGATTCAGCGGAGC
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	30	42	+	12.1129	3.94e-05	1	CAGATCCAATCAT
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	24	35	+	11.8571	3.94e-05	0.217	CACGCCCACCCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	24	35	+	11.8571	3.94e-05	0.217	CACGCCCACCCG
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	24	35	+	11.8571	3.94e-05	0.217	CACGCCCACCCG
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	24	35	+	11.8571	3.94e-05	0.217	CACGCCCACCCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	13	27	+	11.5345	3.94e-05	0.0104	CTCCCGCTCCTTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	22	36	+	11.5345	3.94e-05	0.0104	GCTCCGCCTCGTGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	22	36	+	11.5345	3.94e-05	0.0104	GCTCCGCCTCGTGAG
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	25	39	+	11.5345	3.94e-05	0.0104	TCCCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	70	84	+	11.5345	3.94e-05	0.0104	GCACCGCCCCGCTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	70	84	+	11.5345	3.94e-05	0.0104	GCACCGCCCCGCTCT
SP2	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	31	45	-	11.5345	3.94e-05	0.0104	TCCCTGCCCCGCCCC
ETV1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	12.1273	3.94e-05	0.105	AACGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	12.1273	3.94e-05	0.105	AACGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	12.1273	3.94e-05	0.105	AACGGAAGTA
HEY1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	+	12.2182	3.94e-05	0.133	GGCGCGTGCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	34	43	-	12.3061	3.95e-05	0.0175	GTCCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	35	44	-	12.3061	3.95e-05	0.0175	TCCACACCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	23	32	+	12.3061	3.95e-05	0.0175	GCCTCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	54	63	+	12.3061	3.95e-05	0.0175	GTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	54	63	+	12.3061	3.95e-05	0.0175	GTCCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	85	94	+	12.3061	3.95e-05	0.0175	TCCACACCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	86	95	+	12.3061	3.95e-05	0.0175	TCCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	98	107	+	12.3061	3.95e-05	0.0175	GCCTCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	98	107	+	12.3061	3.95e-05	0.0175	GCCTCACCCC
Foxa2	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	13	24	-	12.24	3.95e-05	0.923	TGTTGGCATAGG
Foxa2	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	91	102	+	12.24	3.95e-05	0.923	TGTTGGCATAGG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	28	42	-	10.6	3.95e-05	0.112	GCGGGGGAGGGGGGA
NR2C2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	53	67	+	10.6	3.95e-05	0.112	GCGGGGGAGGGGGGA
NR2C2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	48	62	-	10.6	3.95e-05	0.112	GCGGGGGAGGGGGGA
NR2C2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	73	87	+	10.6	3.95e-05	0.112	GCGGGGGAGGGGGGA
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	19	34	+	3.65517	3.95e-05	0.299	CTCCCAGGAGGCCCCA
ZNF143	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	81	96	-	3.65517	3.95e-05	0.299	CTCCCAGGAGGCCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	43	56	-	10.1724	3.95e-05	0.0291	GGTTCCGCCCCCGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	43	56	-	10.1724	3.95e-05	0.0291	GGTTCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	43	56	-	10.1724	3.95e-05	0.0291	GGTTCCGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	43	56	-	10.1724	3.95e-05	0.0291	GGTTCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	45	58	-	10.1724	3.95e-05	0.0291	CTCCCCGCCCCTTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	45	58	-	10.1724	3.95e-05	0.0291	CTCCCCGCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	70	83	+	10.1724	3.95e-05	0.0291	GACCCCCCCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	70	83	+	10.1724	3.95e-05	0.0291	GACCCCCCCCACTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.0517	3.95e-05	0.108	TCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.0517	3.95e-05	0.108	TCCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.0517	3.95e-05	0.108	TCCGGAAGCG
ELK3	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.0517	3.95e-05	0.108	TCCGGAAGCG
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	101	114	+	7.79268	3.95e-05	0.5	TCCGCGCACGGCTC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	101	114	+	7.79268	3.95e-05	0.5	TCCGCGCACGGCTC
TFAP2A	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	28	38	+	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	22	32	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	22	32	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	22	32	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	22	32	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	22	32	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	83	93	+	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	77	87	-	12.2545	3.95e-05	0.0515	AGCCCGGGGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	11.4681	3.95e-05	0.0838	ACCGGAAGAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	11.4681	3.95e-05	0.0838	ACCGGAAGAA
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	2	15	-	11.4828	3.95e-05	1	ATGATGCAAATGTA
POU1F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	2	15	-	11.4828	3.95e-05	1	ATGATGCAAATGTA
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	44	57	+	7.2449	3.95e-05	0.0701	GGGGCCCCAGGGCG
Nr5a2	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	12	26	-	11.3621	3.95e-05	0.385	GAGGCCAAAGCCATG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	6	19	+	11.3846	3.95e-05	0.0181	TTCCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	6	19	+	11.3846	3.95e-05	0.0181	TTCCCTCCTCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	28	41	+	11.3846	3.95e-05	0.0181	ATCCCTCCGCCGCA
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.1.0	28	41	+	11.3846	3.95e-05	0.0181	ATCCCTCCGCCGCA
EGR1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	96	109	-	11.3846	3.95e-05	0.0181	TTCCCTCCTCCTCT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	15	27	+	11.4426	3.95e-05	0.0641	CGCCCGGGAGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	43	55	+	11.4426	3.95e-05	0.0641	CGCCCGGGAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	43	55	+	11.4426	3.95e-05	0.0641	CGCCCGGGAGGGA
SP8	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	24	35	+	11.7105	3.95e-05	0.0271	CCCACGCCGACC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	100	114	-	11.3636	3.95e-05	0.109	GCACACCCGCCGCGG
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	9	23	-	12.0141	3.95e-05	0.341	AATTTGAAAACAAAC
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	9	23	-	12.0141	3.95e-05	0.341	AATTTGAAAACAAAC
MLX	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	+	11.4571	3.95e-05	0.212	TCCACGTGAT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	42	52	-	11.9636	3.95e-05	0.13	AAGAGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	42	52	-	11.9636	3.95e-05	0.13	AAGAGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	42	52	-	11.9636	3.95e-05	0.13	AAGAGGAAGTT
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	50	-	12.2787	3.95e-05	0.214	AGGCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	50	-	12.2787	3.95e-05	0.214	AGGCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	101	+	12.2787	3.95e-05	0.214	AGGCACGTGT
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	101	+	12.2787	3.95e-05	0.214	AGGCACGTGT
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	17	36	-	5.44954	3.95e-05	0.0522	CCACCCCCACCCCCACCCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	23	42	-	5.44954	3.95e-05	0.0522	CCACCCCCACCCCCACCCCC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	29	48	-	5.44954	3.95e-05	0.0522	CCACCCCCACCCCCACCCCC
STAT1	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	28	38	-	11.7091	3.95e-05	0.293	CTTACGGGAAT
STAT1	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	77	87	+	11.7091	3.95e-05	0.293	CTTACGGGAAT
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	+	12.2881	3.95e-05	1	TCTTACGTCACC
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	+	12.2881	3.95e-05	1	TCTTACGTCACC
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	+	12.2881	3.95e-05	1	TCTTACGTCACC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	+	12.2881	3.95e-05	1	TCTTACGTCACC
HLF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	+	12.2881	3.95e-05	1	TCTTACGTCACC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	+	12.2881	3.95e-05	1	TGTTACGTCACA
TFE3	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	+	11.6531	3.95e-05	0.107	CTCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	+	11.6531	3.95e-05	0.107	CTCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	+	11.6531	3.95e-05	0.107	CTCACGTGGC
XBP1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	45	58	+	10.9808	3.95e-05	0.503	CCGCCCACGTCACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	15	29	+	9.7377	3.95e-05	0.0531	TACCCCGCCCCTGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	15	29	+	9.7377	3.95e-05	0.0531	TACCCCGCCCCTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	+	12.2727	3.95e-05	0.585	CACACGTGCT
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	+	12.2727	3.95e-05	0.585	CACACGTGCT
PRDM1	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	43	57	+	11.4182	3.95e-05	0.308	GGCGAGGGAAAGGGG
PRDM1	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	58	72	-	11.4182	3.95e-05	0.308	GGCGAGGGAAAGGGG
TFAP2C	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	19	30	+	11.9694	3.95e-05	0.0857	ACCCCAGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	31	42	-	11.9694	3.95e-05	0.0857	TCCCCGAGGCCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	31	42	-	11.9694	3.95e-05	0.0857	TCCCCGAGGCCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	63	74	-	11.9694	3.95e-05	0.0857	TCCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	63	74	-	11.9694	3.95e-05	0.0857	TCCCCGAGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	85	96	-	11.9694	3.95e-05	0.0857	ACCCCAGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	85	96	-	11.9694	3.95e-05	0.0857	ACCCCAGGGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	85	96	-	11.9694	3.95e-05	0.0857	ACCCCAGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	85	96	-	11.9694	3.95e-05	0.0857	ACCCCAGGGGCA
Ddit3::Cebpa	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	99	110	-	12.0667	3.95e-05	1	TTGTGCAATCCT
EGR2	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	23	33	+	10.7241	3.95e-05	0.0799	ACGCCCACGGC
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	46	56	+	10.7241	3.95e-05	0.0799	ACGCACACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	46	56	+	10.7241	3.95e-05	0.0799	ACGCACACGCC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	46	56	+	10.7241	3.95e-05	0.0799	ACGCACACGCC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	46	56	+	10.7241	3.95e-05	0.0799	ACGCACACGCC
PKNOX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	+	4.5102	3.96e-05	1	TAACAGCTGTCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	47	58	+	8.73469	3.96e-05	0.144	GATGGCGTCATC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	47	58	+	8.73469	3.96e-05	0.144	GATGGCGTCATC
Hmx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	46	62	-	11.7195	3.96e-05	1	CTCCGCACTTAAAGCAT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	48	58	+	11.9672	3.96e-05	0.0502	CCGGAACTGGT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	48	58	+	11.9672	3.96e-05	0.0502	CCGGAACTGGT
ZBTB33	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	19	33	-	11.3939	3.96e-05	0.0942	CTCCCGCGGGTTGTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	26	40	-	11.3939	3.96e-05	0.0942	ATCTCGTGATACTTA
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	26	40	-	11.3939	3.96e-05	0.0942	ATCTCGTGATACTTA
ZBTB33	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	82	96	+	11.3939	3.96e-05	0.0942	CTCCCGCGGGTTGTG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	40	57	+	10.4512	3.96e-05	0.132	CTAGCGATGATTGGCTAT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	40	57	+	10.4512	3.96e-05	0.132	CTAGCGATGATTGGCTAT
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	40	57	+	10.4512	3.96e-05	0.132	CTAGCGATGATTGGCTAT
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	40	57	+	10.4512	3.96e-05	0.132	CTAGCGATGATTGGCTAT
Foxk1	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	47	63	+	11.7013	3.96e-05	1	TATTTATAAACACAGAG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	47	57	-	12.0517	3.96e-05	0.227	GGCTGTGGCTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	47	57	-	12.0517	3.96e-05	0.227	GGCTGTGGCTG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	23	33	+	12.0517	3.96e-05	0.227	GGCTGTGGCTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	67	77	+	12.0517	3.96e-05	0.227	GGCTGTGGCTG
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	67	77	+	12.0517	3.96e-05	0.227	GGCTGTGGCTG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	85	98	-	10.9286	3.96e-05	0.236	GAGCTACGTCATAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	85	98	-	10.9286	3.96e-05	0.236	GAGCTACGTCATAA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	14	27	+	10.9286	3.96e-05	0.236	GAGCTACGTCATAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	14	27	+	10.9286	3.96e-05	0.236	GAGCTACGTCATAA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	+	11.2931	3.96e-05	0.0554	TCCCCCAGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	+	11.2931	3.96e-05	0.0554	TCCCCCAGAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	+	11.2931	3.96e-05	0.0554	TCCCCCAGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	+	11.2931	3.96e-05	0.0554	TCCCCCAGAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	-	11.2931	3.96e-05	0.0554	TGCCGCCGAGGCG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	6	20	-	10.803	3.96e-05	0.298	ATTCTTTCCCTTTCC
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	12	25	+	2.78182	3.96e-05	0.47	GGTGTCAAAGGCCG
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	12	25	+	2.78182	3.96e-05	0.47	GGTGTCAAAGGCCG
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	12	25	+	2.78182	3.96e-05	0.47	GGTGTCAAAGGCCG
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	12	25	+	2.78182	3.96e-05	0.47	GGTGTCAAAGGCCG
RXRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	12	25	+	2.78182	3.96e-05	0.47	GGTGTCAAAGGCCG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	76	86	-	12.7755	3.96e-05	0.137	AGCAGCTGGCT
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	76	86	-	12.7755	3.96e-05	0.137	AGCAGCTGGCT
Myog	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	113	+	12.7755	3.96e-05	0.137	AGCAGCTGGCT
PLAG1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	26	39	-	7.23469	3.96e-05	0.0701	GGGGCTGAGGGCGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	76	89	+	7.23469	3.96e-05	0.0701	GGGGCTGAGGGCGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	-	11.5902	3.96e-05	0.0586	CGCCGCTGGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	-	11.5902	3.96e-05	0.0586	CGCCGCTGGGGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	+	11.5902	3.96e-05	0.0586	GGCCTCCCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	-	11.5902	3.96e-05	0.0586	CGCCGCTGGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	-	11.5902	3.96e-05	0.0586	CGCCGCTGGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	-	11.5902	3.96e-05	0.0586	GGCCTCCCGGGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	+	11.5902	3.96e-05	0.0586	CGCCGCTGGGGCT
GLIS2	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	104	+	9.57377	3.96e-05	0.182	GCCCCCCCAGGCAG
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	17	36	-	5.44037	3.96e-05	0.0522	CACCCCCCCCGCCCCCCCGC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	64	83	-	5.44037	3.96e-05	0.0522	CCCCACCCACCCCCCTCCAC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	62	81	+	5.44037	3.96e-05	0.0522	CCCCACCCACCCCCCTCCAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	62	81	+	5.44037	3.96e-05	0.0522	CCCCACCCACCCCCCTCCAC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	79	98	+	5.44037	3.96e-05	0.0522	CACCCCCCCCGCCCCCCCGC
ETV3	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.9014	3.96e-05	0.108	CCCGGAAGTT
ETV3	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.9014	3.96e-05	0.108	CCCGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	30	43	-	4.89091	3.96e-05	0.16	TGGAAGAGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	30	43	-	4.89091	3.96e-05	0.16	TGGAAGAGGAAGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	31	45	+	8.06897	3.96e-05	0.0357	CTCCCCCCACTCAAG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	31	45	+	8.06897	3.96e-05	0.0357	CTCCCCCCACTCAAG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	31	45	+	8.06897	3.96e-05	0.0357	CTCCCCCCACTCAAG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	31	45	+	8.06897	3.96e-05	0.0357	CTCCCCCCACTCAAG
EGR3	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	35	49	+	8.06897	3.96e-05	0.0357	CGCCGCCCACCCCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	58	72	+	8.06897	3.96e-05	0.0357	TTCCGCCCTCGCCTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	44	58	-	8.06897	3.96e-05	0.0357	GTCCGCCCACCCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	58	72	+	8.06897	3.96e-05	0.0357	TTCCGCCCTCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	58	72	+	8.06897	3.96e-05	0.0357	TTCCGCCCTCGCCTG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	44	58	-	8.06897	3.96e-05	0.0357	GTCCGCCCACCCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	66	80	-	8.06897	3.96e-05	0.0357	CGCCGCCCACCCCGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	82	96	+	8.06897	3.96e-05	0.0357	TTCCGCCCTCGCCTG
SPDEF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	57	-	11.5091	3.96e-05	0.225	AACCGGAAGCC
GATA5	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	6	13	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	18	25	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	36	43	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	49	56	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	49	56	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	49	56	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	49	56	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	49	56	+	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	51	58	+	10.8448	3.96e-05	1	AGATAAGG
Shox2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	11.26	3.96e-05	1	CCAATTAA
Shox2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	11.26	3.96e-05	1	CCAATTAA
Shox2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	11.26	3.96e-05	1	CCAATTAA
Shox2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	11.26	3.96e-05	1	CCAATTAA
Shox2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	11.26	3.96e-05	1	CCAATTAA
RAX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.4425	3.96e-05	1	CCAATTAA
RAX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.4425	3.96e-05	1	CCAATTAA
RAX2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.4425	3.96e-05	1	CCAATTAA
RAX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.4425	3.96e-05	1	CCAATTAA
RAX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.4425	3.96e-05	1	CCAATTAA
OTX2	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	8	15	+	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	33	40	+	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	33	40	+	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	39	46	+	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	39	46	+	11.8936	3.96e-05	1	TTAATCCT
Msx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	11.6604	3.96e-05	1	CCAATTAA
Msx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	11.6604	3.96e-05	1	CCAATTAA
Msx3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	11.6604	3.96e-05	1	CCAATTAA
Msx3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	11.6604	3.96e-05	1	CCAATTAA
Msx3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	11.6604	3.96e-05	1	CCAATTAA
MSX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	12.1091	3.96e-05	1	CCAATTAG
MSX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	12.1091	3.96e-05	1	CCAATTAG
MSX2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	12.1091	3.96e-05	1	CCAATTAG
LHX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.5424	3.96e-05	1	CCAATTAA
LHX9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.5424	3.96e-05	1	CCAATTAA
LHX9	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.5424	3.96e-05	1	CCAATTAA
LHX9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.5424	3.96e-05	1	CCAATTAA
LHX9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.5424	3.96e-05	1	CCAATTAA
ISX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	11.6441	3.96e-05	1	CCAATTAA
ISX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	11.6441	3.96e-05	1	CCAATTAA
ISX	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	11.6441	3.96e-05	1	CCAATTAA
ISX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	11.6441	3.96e-05	1	CCAATTAA
ISX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	11.6441	3.96e-05	1	CCAATTAA
SHOX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	+	10.4851	3.96e-05	1	TTAATTGG
SHOX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	+	10.4851	3.96e-05	1	TTAATTGG
SHOX	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	+	10.4851	3.96e-05	1	TTAATTGG
SHOX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	-	10.4851	3.96e-05	1	TTAATTGG
SHOX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	-	10.4851	3.96e-05	1	TTAATTGG
Nobox	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	1	8	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	14	21	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	24	31	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	24	31	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	44	51	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	44	51	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	80	87	+	11.8152	3.96e-05	1	TAATTGGC
Nobox	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	82	89	+	11.8152	3.96e-05	1	TAATTGGC
Prrx2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.2478	3.96e-05	1	CCAATTAA
Prrx2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.2478	3.96e-05	1	CCAATTAA
Prrx2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.2478	3.96e-05	1	CCAATTAA
Prrx2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.2478	3.96e-05	1	CCAATTAA
Prrx2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.2478	3.96e-05	1	CCAATTAA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	6	13	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	18	25	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	36	43	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	49	56	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	49	56	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	49	56	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	49	56	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	49	56	+	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	51	58	+	13.2909	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	48	55	-	10.8448	3.96e-05	1	AGATAAGG
GATA5	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	72	79	-	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	76	83	-	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	98	105	-	10.8448	3.96e-05	1	AGATAAGG
GATA5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	98	105	-	10.8448	3.96e-05	1	AGATAAGG
OTX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	6	13	-	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	6	13	-	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	96	103	-	11.8936	3.96e-05	1	TTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	96	103	-	11.8936	3.96e-05	1	TTAATCCT
HOXA5	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	16	23	-	10.62	3.96e-05	1	CGCTAATT
HOXA5	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	76	83	+	10.62	3.96e-05	1	CGCTAATT
Nobox	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	8	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	5	12	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	5	12	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	24	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	33	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	33	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	35	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	35	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	35	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	35	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	46	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	54	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	54	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	71	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	91	-	11.8152	3.96e-05	1	TAATTGGC
Nobox	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	107	114	-	11.8152	3.96e-05	1	TAATTGGC
GATA3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	48	55	-	13.2909	3.96e-05	1	AGATAAGG
GATA3	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	72	79	-	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	76	83	-	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	98	105	-	13.2909	3.96e-05	1	AGATAAGG
GATA3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	98	105	-	13.2909	3.96e-05	1	AGATAAGG
EN1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.5085	3.96e-05	1	CTAATTAG
EN1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.5085	3.96e-05	1	CTAATTAG
EN1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.5085	3.96e-05	1	CTAATTAG
EN1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.5085	3.96e-05	1	CTAATTAG
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	86	99	-	9.90909	3.96e-05	0.253	CGGCCACGTTACCG
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	32	42	+	11.9545	3.96e-05	0.0469	ACCCACACCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	32	42	+	11.9545	3.96e-05	0.0469	ACCCACACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	37	47	-	11.9545	3.96e-05	0.0469	CACCACTCCCA
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	9	20	-	11.75	3.97e-05	0.217	CAGGATGGCCTC
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	20	34	+	11.6396	3.97e-05	0.171	CGGGGGGAGAGGGGT
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	79	99	-	10.6735	3.97e-05	0.0148	GGAGGAGTGGAAAGGGAGCGT
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	16	36	+	10.6735	3.97e-05	0.0148	GGAGGAGTGGAAAGGGAGCGT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	19	39	+	10.2581	3.97e-05	0.165	TTCCTGTTTCAGCTTCTCTTC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	2	22	-	10.2581	3.97e-05	0.165	TTCCTGTTTCAGCTTCTCTTC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	21	31	+	12.4286	3.97e-05	0.192	TCATGACTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	58	68	-	12.4286	3.97e-05	0.192	TCATGACTCAG
TBP	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	47	61	+	11.7222	3.97e-05	0.503	CTATATAAGGAGCTA
TBP	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	54	68	-	11.7222	3.97e-05	0.503	CTATATAAGGAGCTA
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	60	73	-	0.181818	3.97e-05	0.717	CCGAAAGCGGAAAC
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	60	73	-	0.181818	3.97e-05	0.717	CCGAAAGCGGAAAC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.2115	3.97e-05	0.11	TCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.2115	3.97e-05	0.11	TCCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.2115	3.97e-05	0.11	TCCGGAAGCG
FEV	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.2115	3.97e-05	0.11	TCCGGAAGCG
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	9	25	+	10.9184	3.97e-05	0.338	GGGGCAGAGGGAAGTGA
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	49	63	+	11.8269	3.97e-05	0.131	GGACCAGCCAATCCG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	49	63	+	11.8269	3.97e-05	0.131	GGACCAGCCAATCCG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	49	63	+	11.8269	3.97e-05	0.131	GGACCAGCCAATCCG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	49	63	+	11.8269	3.97e-05	0.131	GGACCAGCCAATCCG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	2	15	+	7.22449	3.97e-05	0.0701	GGGGCTGGAAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	2	15	+	7.22449	3.97e-05	0.0701	GGGGCTGGAAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	2	15	+	7.22449	3.97e-05	0.0701	GGGGCTGGAAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	66	79	-	7.22449	3.97e-05	0.0701	GGGGCTGGAAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	66	79	-	7.22449	3.97e-05	0.0701	GGGGCTGGAAGGGG
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	+	12.1273	3.97e-05	0.174	GCTGACTCATT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	35	45	+	12.1273	3.97e-05	0.174	GTTGACTCAGG
KLF16	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	2	12	+	11.569	3.97e-05	0.016	GGCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	40	50	+	11.569	3.97e-05	0.016	CCCACGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	43	53	+	11.569	3.97e-05	0.016	CCCACGCCCCG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	69	79	+	11.569	3.97e-05	0.016	GGCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	5	15	-	11.569	3.97e-05	0.016	CCCACGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	5	15	-	11.569	3.97e-05	0.016	CCCACGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	62	72	-	11.569	3.97e-05	0.016	CCCACGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	103	113	-	11.569	3.97e-05	0.016	GGCCCTCCCCC
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	6	16	+	12.2069	3.97e-05	0.487	GAACCACAGCA
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	99	109	-	12.2069	3.97e-05	0.487	GAACCACAGCA
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	-	12.2692	3.97e-05	0.131	GTCACGTGAG
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	-	12.2692	3.97e-05	0.131	GTCACGTGAG
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	-	12.2692	3.97e-05	0.131	GTCACGTGAG
TFEB	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	-	12.2692	3.97e-05	0.131	GTCACGTGAG
TFEB	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	-	12.2692	3.97e-05	0.131	GTCACGTGAG
KLF14	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	95	108	+	10.1552	3.97e-05	0.0292	GGCCCCGCCGCCCT
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	56	73	-	6.44828	3.97e-05	0.22	TGGTCGCGCCCCTTCCGC
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	56	73	-	6.44828	3.97e-05	0.22	TGGTCGCGCCCCTTCCGC
IRF2	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	32	49	+	7.00917	3.97e-05	0.611	TCAAAACGAAACCTTCTC
IRF2	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	97	114	+	7.00917	3.97e-05	0.611	TCAAAACGAAACCTTCTC
PAX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	55	71	+	7.36364	3.97e-05	0.577	GGCCATGCAAGACTGAA
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	2	20	+	11.5323	3.97e-05	0.671	TGCCCGAAGTTGGCCTTGG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	10	28	-	11.5323	3.97e-05	0.671	TGACAGCGTGTGACCCGGC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	10	28	-	11.5323	3.97e-05	0.671	TGACAGCGTGTGACCCGGC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	39	57	-	11.5323	3.97e-05	0.671	TGCCCGAAGTTGGCCTTGG
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	39	57	-	11.5323	3.97e-05	0.671	TGCCCGAAGTTGGCCTTGG
ZIC1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	2	15	+	7.93617	3.98e-05	0.0959	CCCCGCCTGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	29	42	-	7.93617	3.98e-05	0.0959	CACCCCCCACCGCC
ZIC1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	57	70	+	7.93617	3.98e-05	0.0959	CCCCGCCTGCCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	45	58	-	7.93617	3.98e-05	0.0959	CCCCGCCTGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	92	+	7.93617	3.98e-05	0.0959	TGCCGCCCGGGGTG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	92	+	7.93617	3.98e-05	0.0959	TGCCGCCCGGGGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	100	113	-	7.93617	3.98e-05	0.0959	CCCCGCCTGCCGCG
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	7	22	+	11.2364	3.98e-05	0.0374	CCCTGCCCCCGCCCCC
EGR4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	21	36	+	11.2364	3.98e-05	0.0374	CCACGCGCGCGCACGT
EGR4	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	33	48	-	11.2364	3.98e-05	0.0374	GCCCGCCCGCCCGCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	56	71	+	11.2364	3.98e-05	0.0374	CCCCGCCCGCCCGGTG
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	79	94	-	11.2364	3.98e-05	0.0374	CCACGCGCGCGCACGT
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	93	108	-	11.2364	3.98e-05	0.0374	CCCTGCCCCCGCCCCC
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	25	35	+	12.3269	3.98e-05	0.309	GGTTTGAGTCA
HNF4G	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	39	-	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
HNF4G	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	76	90	+	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	76	90	+	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	76	90	+	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	76	90	+	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
HNF4G	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	76	90	+	11.6923	3.98e-05	0.335	CAGGGTCACAGGCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	92	102	+	11.8293	3.98e-05	0.0176	TTCACGCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	13	23	-	11.8293	3.98e-05	0.0176	TTCACGCCCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	66	82	-	5.72727	3.98e-05	0.0232	ACTGACCCGCCCTCTCT
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	3	16	-	12.2759	3.98e-05	0.241	TTTAAAGGAAATCA
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	3	16	-	12.2759	3.98e-05	0.241	TTTAAAGGAAATCA
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	14	26	+	11.7551	3.98e-05	0.301	ATACTGATGTCAC
JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	73	85	+	11.7551	3.98e-05	0.301	AGGATGATGCAAG
JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	24	36	-	11.7551	3.98e-05	0.301	AGGATGATGCAAG
JUND	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	17	27	+	12.0426	3.98e-05	0.191	GGTGACTAATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	+	12.0426	3.98e-05	0.191	CGTGAGTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	+	12.0426	3.98e-05	0.191	CGTGAGTCATG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	-	12.0426	3.98e-05	0.191	CGTGAGTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	81	91	-	12.0426	3.98e-05	0.191	GGTGACTAATG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	29	40	+	11.9194	3.98e-05	0.281	CCGCCCACCCAC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	29	40	+	11.9194	3.98e-05	0.281	CCGCCCACCCAC
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	72	81	-	12.2809	3.98e-05	0.871	GTGGCCTGAC
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	72	81	-	12.2809	3.98e-05	0.871	GTGGCCTGAC
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	72	81	-	12.2809	3.98e-05	0.871	GTGGCCTGAC
SREBF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	72	81	-	12.2809	3.98e-05	0.871	GTGGCCTGAC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	1	12	+	10.4426	3.98e-05	0.0972	CTCCCGGAACTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	1	12	+	10.4426	3.98e-05	0.0972	CTCCCGGAACTG
Klf12	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	31	45	-	9.72131	3.98e-05	0.0531	TGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	37	51	-	9.72131	3.98e-05	0.0531	GGCCACACCTAGACA
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	37	51	-	9.72131	3.98e-05	0.0531	GGCCACACCTAGACA
Myod1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	40	52	+	12.7551	3.98e-05	0.145	CCCACCTGTCTCA
Myod1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	63	75	-	12.7551	3.98e-05	0.145	CCCACCTGTCTCA
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	15	24	-	11.9592	3.98e-05	0.8	TCAAGGTTAC
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	15	24	-	11.9592	3.98e-05	0.8	TCAAGGTTAC
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	48	59	+	12.0449	3.98e-05	0.832	AAAGTGCTGAAG
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	48	59	+	12.0449	3.98e-05	0.832	AAAGTGCTGAAG
TFAP2A	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	37	47	-	12.2364	3.98e-05	0.0515	ACCCTGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	40	50	-	12.2364	3.98e-05	0.0515	ACCCTGAGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	40	50	-	12.2364	3.98e-05	0.0515	ACCCTGAGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	68	78	+	12.2364	3.98e-05	0.0515	ACCCTGAGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	100	110	-	12.2364	3.98e-05	0.0515	AGCCCGCGGCC
ERF	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
ERF	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.0286	3.98e-05	0.0915	GCCGGAAGCA
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	4	13	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	4	13	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	17	26	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	17	26	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	94	103	+	10.0806	3.98e-05	0.0452	GTCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	94	103	-	10.0806	3.98e-05	0.0452	GCCGCGCGAC
SP2	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	6	20	+	11.5172	3.98e-05	0.0104	GCACCGCCCTTGGGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	7	21	+	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	54	68	+	11.5172	3.98e-05	0.0104	GTTCCTCCTCCGCAG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	59	73	+	11.5172	3.98e-05	0.0104	CGCCCTCCTCTCTGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	60	74	+	11.5172	3.98e-05	0.0104	TCCCTGCCCTCTCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	65	79	+	11.5172	3.98e-05	0.0104	CACCCACCCCCCTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	65	79	+	11.5172	3.98e-05	0.0104	CACCCACCCCCCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	65	79	+	11.5172	3.98e-05	0.0104	CTTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	83	+	11.5172	3.98e-05	0.0104	CCCCCTCCCTCGTTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	83	+	11.5172	3.98e-05	0.0104	CCCCCTCCCTCGTTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	83	+	11.5172	3.98e-05	0.0104	CCCCCTCCCTCGTTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	83	+	11.5172	3.98e-05	0.0104	CCCCCTCCCTCGTTC
SP2	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	72	86	+	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	73	87	+	11.5172	3.98e-05	0.0104	CTTCCTCCTCCTCCT
SP2	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	89	103	+	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	94	108	+	11.5172	3.98e-05	0.0104	GCTCCACCCCTATCG
SP2	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	6	20	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	12	26	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	12	26	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	28	42	-	11.5172	3.98e-05	0.0104	CTTCCTCCTCCTCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	29	43	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	29	43	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	32	46	-	11.5172	3.98e-05	0.0104	CCCCCTCCCTCGTTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	33	47	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	33	47	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	33	47	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	33	47	-	11.5172	3.98e-05	0.0104	GCCGCGCCCCGCCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	36	50	-	11.5172	3.98e-05	0.0104	CTTCCTCCTCCTCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	36	50	-	11.5172	3.98e-05	0.0104	GCACCGCCCTTGGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	36	50	-	11.5172	3.98e-05	0.0104	GCTCCACCCCTATCG
SP2	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	64	78	-	11.5172	3.98e-05	0.0104	CTTCCTCCTCCTCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	66	80	-	11.5172	3.98e-05	0.0104	CACCCACCCCCCTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	92	106	-	11.5172	3.98e-05	0.0104	CCTCCGCCTCACGGC
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	95	105	+	11.6429	3.98e-05	0.285	GAGCATGTGGA
SP8	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	56	67	+	11.6974	3.98e-05	0.0272	AAACCGCCCCCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	94	105	+	11.7241	3.98e-05	0.365	ATGACCACCGAG
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	94	105	+	11.7241	3.98e-05	0.365	ATGACCACCGAG
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	94	105	+	11.7241	3.98e-05	0.365	ATGACCACCGAG
TBX19	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	88	107	-	10.4024	3.98e-05	1	CTTCACAGCCTGGTGCCACC
TBX19	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	88	107	-	10.4024	3.98e-05	1	CTTCACAGCCTGGTGCCACC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	16	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	16	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	25	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	27	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	32	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	25	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	39	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	53	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	58	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	58	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	58	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	58	+	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	71	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	71	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	75	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	83	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	83	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	83	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	83	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	92	-	12.2545	3.98e-05	0.102	ACAGGAAATG
ERG	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	12.2545	3.98e-05	0.102	CCCGGAAGTG
ERG	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	108	-	12.2545	3.98e-05	0.102	ACAGGAAATG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	36	53	+	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	36	53	+	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	36	53	+	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	36	53	+	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	72	89	-	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	72	89	-	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	72	89	-	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	72	89	-	-11.2763	3.98e-05	0.0382	GGAGGGAGGGAAGAGCGG
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	67	80	-	9.89394	3.99e-05	0.253	CGGCCACGTAAAGA
ETV6	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	12.1731	3.99e-05	0.0907	ACAGGAAGTA
ETV6	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	12.1731	3.99e-05	0.0907	ACAGGAAGTA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	10	29	-	5.42202	3.99e-05	0.0524	CCGCCCCCCGCCCCCCACAG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	62	81	+	5.42202	3.99e-05	0.0524	CCGCCCCCCGCCCCCCACAG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	66	80	+	9.47143	3.99e-05	0.105	GCCCACCCGCCGTCA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	66	80	+	9.47143	3.99e-05	0.105	GCCCACCCGCCGTCA
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	43	57	-	9.47143	3.99e-05	0.105	GCCCACCCGCCGTCA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	43	57	-	9.47143	3.99e-05	0.105	GCCCACCCGCCGTCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	5	15	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	5	15	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	5	15	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	5	15	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	31	41	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	76	86	+	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	36	46	-	11.3091	3.99e-05	0.0158	GCCCACGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	74	84	-	11.3091	3.99e-05	0.0158	CCCCCTGCGCG
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	36	47	+	12.0198	3.99e-05	1	TACGTAAACATG
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	36	47	+	12.0198	3.99e-05	1	TACGTAAACATG
EHF	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	22	33	+	11.377	3.99e-05	0.118	AAGGAGGAAGTG
EHF	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	89	-	11.377	3.99e-05	0.118	AAGGAGGAAGTG
EHF	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	93	-	11.377	3.99e-05	0.118	AAGGAGGAAGTG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	-	11.4262	3.99e-05	0.0641	TCCCTCTCGGGGA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	+	11.4262	3.99e-05	0.0641	TCCCTCTCGGGGA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	8	18	+	11.7049	3.99e-05	0.14	GACAGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	8	18	+	11.7049	3.99e-05	0.14	GACAGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	66	76	+	11.7049	3.99e-05	0.14	AGCCGGAAGTA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	66	76	+	11.7049	3.99e-05	0.14	AGCCGGAAGTA
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	-	4.4898	3.99e-05	1	TGAAAGCTGCCA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	97	108	-	12.0182	3.99e-05	0.0893	TGCCTCCAGGCC
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	49	62	-	9.86364	3.99e-05	0.326	CGGGCCGAAGGTCG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	49	62	-	9.86364	3.99e-05	0.326	CGGGCCGAAGGTCG
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	49	62	-	9.86364	3.99e-05	0.326	CGGGCCGAAGGTCG
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	49	62	-	9.86364	3.99e-05	0.326	CGGGCCGAAGGTCG
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	+	12.4717	3.99e-05	1	GGTGACGTAATC
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	+	12.4717	3.99e-05	1	GGTGACGTAATC
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	4	16	+	12.2449	3.99e-05	0.383	ATGAGGTCATAAG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	4	16	+	12.2449	3.99e-05	0.383	ATGAGGTCATAAG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	11	29	-	9.90164	3.99e-05	0.113	AGCCCCCTAGGAGGCAGCC
USF2	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	75	85	-	12.3061	3.99e-05	0.114	CTCACGTGATT
USF2	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	30	40	+	12.3061	3.99e-05	0.114	CTCACGTGATT
FOXH1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	100	110	-	12.3077	3.99e-05	1	CCCAATAAACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	5	15	+	12.3077	3.99e-05	1	CCCAATAAACA
FOXH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	5	15	+	12.3077	3.99e-05	1	CCCAATAAACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	48	58	+	12.3077	3.99e-05	1	CCCAATAAACA
FOXH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	48	58	+	12.3077	3.99e-05	1	CCCAATAAACA
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	12	25	+	11.3654	3.99e-05	0.0183	CGGCCACCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	5	18	-	11.3654	3.99e-05	0.0183	GGCCCGCCGCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	5	18	-	11.3654	3.99e-05	0.0183	GGCCCGCCGCCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	74	87	+	11.3654	3.99e-05	0.0183	CCGTCGCCGCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	74	87	+	11.3654	3.99e-05	0.0183	CCGTCGCCGCCGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	42	55	+	11.7324	3.99e-05	0.214	AGAAAGGGGAGGGA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	42	55	+	11.7324	3.99e-05	0.214	AGAAAGGGGAGGGA
SPIC	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	35	48	-	11.7324	3.99e-05	0.214	AGAAAGGGGAGGGA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	69	82	-	11.7324	3.99e-05	0.214	GGAAAGAGGAAGGG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	47	67	+	10.2419	3.99e-05	0.165	CTGGCGTTCCTCTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	47	67	+	10.2419	3.99e-05	0.165	CTGGCGTTCCTCTTTTTTTTT
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	44	61	+	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
KLF13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	44	61	+	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
KLF13	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	89	106	+	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	9	26	-	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	9	26	-	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
KLF13	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	54	71	-	6.43103	3.99e-05	0.22	GGGCCACGCCAACCAGTG
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	+	12.0862	4e-05	1	AACATATGCT
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	+	12.0862	4e-05	1	AACATATGCT
NEUROD2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	+	12.0862	4e-05	1	AACATATGCT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	36	48	-	4.20408	4e-05	0.233	CGGGGAAGGCCCT
NFKB1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	93	105	-	4.20408	4e-05	0.233	CGGGGAAGGCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	10	22	+	4.20408	4e-05	0.233	CGGGGAAGGCCCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	10	22	+	4.20408	4e-05	0.233	CGGGGAAGGCCCT
NFKB1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	67	79	+	4.20408	4e-05	0.233	CGGGGAAGGCCCT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	24	34	+	12.4082	4e-05	0.192	GGATGATTCAT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	+	11.5738	4e-05	0.0586	AGCCGTAGGGGGA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	88	108	-	6.55102	4e-05	0.208	CCGGGGGCCATGGTCAGCAGC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	88	108	-	6.55102	4e-05	0.208	CCGGGGGCCATGGTCAGCAGC
RFX3	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	+	10.4091	4e-05	0.239	GGTGGCCCTGGAAACG
RFX3	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	-	10.4091	4e-05	0.239	GGTGGCCCTGGAAACG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	9	28	-	5.41284	4e-05	0.0524	AACCACAACATCACCTTAGG
SP4	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	50	66	+	5.70909	4e-05	0.0233	TTAACTCCGCCTCCAAG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	20	34	-	10.5714	4e-05	0.112	GCGGGGCGGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	20	34	-	10.5714	4e-05	0.112	GCGGGGCGGGGGTGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	20	34	-	10.5714	4e-05	0.112	GCGGGGCGGGGGTGG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	81	95	+	10.5714	4e-05	0.112	GCGGGGCGGGGGTGG
CENPB	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	58	72	-	11.4423	4e-05	0.829	CCCGCTTCCACCGCC
CENPB	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	43	57	+	11.4423	4e-05	0.829	CCCGCTTCCACCGCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	23	33	-	11.9091	4e-05	0.0469	AGCCCCTCCCT
ZNF740	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	20	29	+	11.5963	4e-05	0.0513	CCCCCCCCGA
ZNF740	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	21	30	+	11.5963	4e-05	0.0513	CCCCCCCGAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	72	81	+	11.5963	4e-05	0.0513	CCCCCCCGAC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	85	94	-	11.5963	4e-05	0.0513	CCCCCCCGAC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	86	95	-	11.5963	4e-05	0.0513	CCCCCCCCGA
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	29	46	+	10.4268	4e-05	0.132	TGCACTGTGATTGGCTGT
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	29	46	+	10.4268	4e-05	0.132	TGCACTGTGATTGGCTGT
NFYA	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	69	86	-	10.4268	4e-05	0.132	TGCACTGTGATTGGCTGT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	83	93	-	12.0172	4e-05	0.228	ACCTGTGGTTG
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	64	77	-	10.1379	4e-05	0.0292	TACCCCGCCCCACC
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	79	92	-	10.1379	4e-05	0.0292	GTCCGCGCCCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	17	27	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	17	27	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	11	21	-	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	11	21	-	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	32	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	32	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	32	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	32	+	12	4e-05	0.012	TCCCCGCCCAG
SP1	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	12	22	-	12	4e-05	0.012	CTCCCGCCCTT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	29	39	-	12	4e-05	0.012	CCCCCGCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	29	39	-	12	4e-05	0.012	CCCCCGCCTTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	92	102	+	12	4e-05	0.012	ATCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	92	102	+	12	4e-05	0.012	ATCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	83	93	-	12	4e-05	0.012	TCCCCGCCCAG
HOXA10	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	34	44	+	11.3774	4e-05	1	TGTAATTAAAA
HOXA10	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	34	44	+	11.3774	4e-05	1	TGTAATTAAAA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	72	-	11.4909	4e-05	0.225	TCCCGGAAGTC
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	72	-	11.4909	4e-05	0.225	TCCCGGAAGTC
RELA	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	22	31	+	11.5918	4e-05	0.213	GTGGGTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	24	33	-	11.5918	4e-05	0.213	GTGGGTTTCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	24	33	-	11.5918	4e-05	0.213	GTGGGTTTCC
RELA	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	84	93	-	11.5918	4e-05	0.213	GTGGGTTTCC
JUND	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	33	43	-	12.0213	4e-05	0.191	AGTGAGTCACT
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	20	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	14	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	22	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	22	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	22	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	22	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	14	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	21	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	23	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	27	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	27	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	39	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	36	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	39	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	39	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	50	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	44	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	57	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	50	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	54	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	54	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	54	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	57	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	57	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	57	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	57	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	57	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	58	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	58	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	59	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	59	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	69	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	73	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	73	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	73	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	73	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	71	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	71	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	73	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	87	+	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	84	-	12.6517	4e-05	0.191	GTCACGTGG
Creb3l2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	109	+	12.6517	4e-05	0.191	GTCACGTGG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	25	39	+	11.8723	4e-05	0.312	GCTGATGACGTAAGC
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	25	39	+	11.8723	4e-05	0.312	GCTGATGACGTAAGC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	25	39	+	11.8723	4e-05	0.312	GCTGATGACGTAAGC
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	25	39	+	11.8723	4e-05	0.312	GCTGATGACGTAAGC
Klf12	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	35	49	+	9.70492	4e-05	0.0531	GGCCACTCCCAGGGC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	66	80	-	9.70492	4e-05	0.0531	GGCCACTCCCAGGGC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	66	80	-	9.70492	4e-05	0.0531	GGCCACTCCCAGGGC
Rarb	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	73	88	+	-1.89655	4e-05	0.964	CCAGGGGAAAAGCTCA
Srebf1(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	11.1207	4.01e-05	0.241	GTCGCGTGAC
Srebf1(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	11.1207	4.01e-05	0.241	GTCGCGTGAC
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	81	91	+	12.1212	4.01e-05	0.269	AGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	81	91	+	12.1212	4.01e-05	0.269	AGCCGCCATGT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	81	91	+	12.1212	4.01e-05	0.269	AGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	81	91	+	12.1212	4.01e-05	0.269	AGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	81	91	+	12.1212	4.01e-05	0.269	AGCCGCCATGT
ELF1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	16	27	+	10.4909	4.01e-05	0.0999	CGCGCGGAAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	50	61	+	10.4909	4.01e-05	0.0999	CGCGCGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	54	65	-	10.4909	4.01e-05	0.0999	CGCGCGGAAGTG
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	88	99	-	10.4909	4.01e-05	0.0999	CGCGCGGAAGTG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	29	41	+	10.9836	4.01e-05	0.518	AGCTGTTGCAACA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	99	111	-	10.9836	4.01e-05	0.518	AGCTGTTGCAACA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	41	+	11.5517	4.01e-05	0.016	GCCCTGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	41	+	11.5517	4.01e-05	0.016	GCCCTGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	70	+	11.5517	4.01e-05	0.016	GCCCTGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	85	+	11.5517	4.01e-05	0.016	GCACCGCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	18	28	-	11.5517	4.01e-05	0.016	GCACCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	27	37	-	11.5517	4.01e-05	0.016	GCACCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	30	40	-	11.5517	4.01e-05	0.016	GCACCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	30	40	-	11.5517	4.01e-05	0.016	GCACCGCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	91	101	-	11.5517	4.01e-05	0.016	GCCCTGCCCCC
USF1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	70	+	12.0204	4.01e-05	0.156	GGCACGTGGCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	11	25	-	8.03448	4.01e-05	0.0359	GCCCGCCCGCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	11	25	-	8.03448	4.01e-05	0.0359	GCCCGCCCGCGCCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	56	70	+	8.03448	4.01e-05	0.0359	GCCCGCCCGCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	56	70	+	8.03448	4.01e-05	0.0359	GCCCGCCCGCGCCGC
E2F6	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	16	26	+	12.3793	4.01e-05	0.0534	GGGTGGGAGGA
E2F6	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	69	79	+	12.3793	4.01e-05	0.0534	GGGTGGGAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	25	45	-	10.6531	4.01e-05	0.0149	GAAGGAGCGGAGTGAGGTGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	80	100	-	10.6531	4.01e-05	0.0149	TGATGAAGGGAGGTGGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	15	35	+	10.6531	4.01e-05	0.0149	GGAAAAGGAGGGGGTGGAACC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	15	35	+	10.6531	4.01e-05	0.0149	GGAAAAGGAGGGGGTGGAACC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	36	56	+	10.6531	4.01e-05	0.0149	AGGGGTGGGGGCGGGGAGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	36	56	+	10.6531	4.01e-05	0.0149	AGGGGTGGGGGCGGGGAGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	36	56	+	10.6531	4.01e-05	0.0149	AGGGGTGGGGGCGGGGAGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	36	56	+	10.6531	4.01e-05	0.0149	AGGGGTGGGGGCGGGGAGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	36	56	+	10.6531	4.01e-05	0.0149	AGGGGTGGGGGCGGGGAGGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	36	56	+	10.6531	4.01e-05	0.0149	GAGACAAGGGGAGGAAGAAAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	93	113	+	10.6531	4.01e-05	0.0149	AGAGCGGGAAGAAGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	93	113	+	10.6531	4.01e-05	0.0149	AGAGCGGGAAGAAGGAGGAGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	81	93	+	9.72414	4.01e-05	0.134	TTCCAGGAAGTTT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	81	93	+	9.72414	4.01e-05	0.134	TTCCAGGAAGTTT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	101	113	+	9.72414	4.01e-05	0.134	TTCCAGGAAGTTT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	101	113	+	9.72414	4.01e-05	0.134	TTCCAGGAAGTTT
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	15	27	+	11.7347	4.01e-05	0.301	TTTCTGATGTCAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	15	27	+	11.7347	4.01e-05	0.301	TTTCTGATGTCAT
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	21	32	+	11.9032	4.01e-05	0.281	GGGACCCCCCAC
RFX4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	23	38	+	10.9848	4.01e-05	0.234	AGCCGCTATGGTTACT
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	77	92	-	10.9848	4.01e-05	0.234	AGCCGCTATGGTTACT
RFX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	77	92	-	10.9848	4.01e-05	0.234	AGCCGCTATGGTTACT
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	16	30	+	11.6346	4.01e-05	0.426	AGGGCACCCCGCGCC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	16	30	+	11.6346	4.01e-05	0.426	AGGGCACCCCGCGCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	16	30	+	11.6346	4.01e-05	0.426	AGGGCACCCCGCGCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	16	30	+	11.6346	4.01e-05	0.426	AGGGCACCCCGCGCC
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	26	40	+	11.6346	4.01e-05	0.426	AGGTCAGGTCCGCCT
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	26	40	+	11.6346	4.01e-05	0.426	AGGTCAGGTCCGCCT
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	27	41	-	11.6346	4.01e-05	0.426	GGGTCAGCCAGTTCA
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	27	41	-	11.6346	4.01e-05	0.426	GGGTCAGCCAGTTCA
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	11.9828	4.01e-05	1	AGCATATGTC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	12	23	+	11.7121	4.01e-05	0.109	TGGCGTCCCCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	12	23	+	11.7121	4.01e-05	0.109	TGGCGTCCCCGG
HINFP	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	34	45	-	11.7121	4.01e-05	0.109	CTGGGTCCGCCT
HINFP	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	70	81	+	11.7121	4.01e-05	0.109	CTGGGTCCGCCT
HINFP	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	95	106	+	11.7121	4.01e-05	0.109	CTGGGTCCGCCT
BATF3	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	15	28	+	2.9697	4.01e-05	0.16	CCATGACATCAGCC
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	87	100	-	2.9697	4.01e-05	0.16	CCATGACATCAGCC
BATF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	87	100	-	2.9697	4.01e-05	0.16	CCATGACATCAGCC
CREB3	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	75	88	-	10.9	4.02e-05	0.236	TCGTGACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	16	29	+	10.9	4.02e-05	0.236	ACGCCACGTGACTC
CREB3	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	27	40	+	10.9	4.02e-05	0.236	TCGTGACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	48	61	+	10.9	4.02e-05	0.236	ACGCCACGTGACTC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	29	43	-	11.3276	4.02e-05	0.385	AAAGCCAAGGTTACG
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	70	84	+	11.3276	4.02e-05	0.385	AAAGCCAAGGTTACG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	15	25	-	12.1552	4.02e-05	0.0458	GGGCGGGGAAC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	15	25	-	12.1552	4.02e-05	0.0458	GGGCGGGGAAC
SP2	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	32	46	+	11.5	4.02e-05	0.0105	TCTCCGCCTTCTGCT
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	26	40	-	11.5	4.02e-05	0.0105	GCTCCTCCCCACTGC
ETS1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	42	51	+	12.1552	4.02e-05	0.0979	ACAGGAAGCG
ETS1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	50	59	+	12.1552	4.02e-05	0.0979	ACAGGAAGCG
ETS1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	69	78	+	12.1552	4.02e-05	0.0979	ACAGGAAGCG
ETS1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	37	46	-	12.1552	4.02e-05	0.0979	ACAGGAAGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	39	49	+	11.9508	4.02e-05	0.0505	CCGGAAGGGAT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	39	49	+	11.9508	4.02e-05	0.0505	CCGGAAGGGAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	39	49	+	11.9508	4.02e-05	0.0505	CCGGAAGGGAT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	39	49	+	11.9508	4.02e-05	0.0505	CCGGAAGGGAT
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	39	49	+	11.9508	4.02e-05	0.0505	CCGGAAGGGAT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	88	98	+	11.9508	4.02e-05	0.0505	CCGGAAGGAGC
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	4	18	+	11.3636	4.02e-05	0.095	ATCTCACGGGAATTG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	97	111	-	11.3636	4.02e-05	0.095	ATCTCACGGGAATTG
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	11	20	+	11.8387	4.02e-05	1	AATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	11	20	+	11.8387	4.02e-05	1	AATTTCCATT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	14	30	-	5.69091	4.02e-05	0.0233	CCCGCCCCGCCCCGGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	14	30	-	5.69091	4.02e-05	0.0233	CCCGCCCCGCCCCGGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	14	30	-	5.69091	4.02e-05	0.0233	CCCGCCCCGCCCCGGCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	24	35	-	11.8143	4.02e-05	0.217	TCCGCCCACCTG
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	24	35	-	11.8143	4.02e-05	0.217	TCCGCCCACCTG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	65	76	+	11.8143	4.02e-05	0.217	TCCGCCCACCTG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	65	76	+	11.8143	4.02e-05	0.217	TCCGCCCACCTG
Rarg(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	85	101	-	-3.23636	4.02e-05	1	CAGGCCAAGCAAGTTTA
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	44	58	-	11.6216	4.02e-05	0.172	GGAGGGGAAAGGGGG
HEY1	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	12.1818	4.02e-05	0.133	ACCACGTGTC
HEY1	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	12.1818	4.02e-05	0.133	ACCACGTGTC
PROX1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	23	34	+	10.0727	4.02e-05	1	GATGACGTCTCC
PROX1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	81	92	-	10.0727	4.02e-05	1	GATGACGTCTCC
Stat4	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	23	36	+	12.2586	4.02e-05	0.241	ATGCCGGGAAGAGG
Stat4	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	79	92	-	12.2586	4.02e-05	0.241	ATGCCGGGAAGAGG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	55	69	+	10.7727	4.02e-05	0.298	GAAGTTTTCTTTTTC
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	74	91	-	10.4146	4.02e-05	0.132	AGAGAGCTGAGTGGCCTG
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	74	91	-	10.4146	4.02e-05	0.132	AGAGAGCTGAGTGGCCTG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	74	91	-	10.4146	4.02e-05	0.132	AGAGAGCTGAGTGGCCTG
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	74	91	-	10.4146	4.02e-05	0.132	AGAGAGCTGAGTGGCCTG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	23	43	-	10.2258	4.02e-05	0.165	CTTGCTTTTCTTTTTTTCTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	23	43	-	10.2258	4.02e-05	0.165	CTTGCTTTTCTTTTTTTCTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	63	83	+	10.2258	4.02e-05	0.165	CTTGCTTTTCTTTTTTTCTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	63	83	+	10.2258	4.02e-05	0.165	CTTGCTTTTCTTTTTTTCTTT
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	83	98	+	-6.53846	4.02e-05	0.329	GGACCCCCACCTTCGC
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	83	98	+	-6.53846	4.02e-05	0.329	GGACCCCCACCTTCGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	83	98	+	-6.53846	4.02e-05	0.329	GGACCCCCACCTTCGC
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	83	98	+	-6.53846	4.02e-05	0.329	GGACCCCCACCTTCGC
Zfx	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	9	22	+	11.9091	4.02e-05	0.0493	TGAGGCGTGGCCTG
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	5	22	+	6.9633	4.02e-05	0.611	GAGAAATGAAACTAAAGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	-	11.9388	4.02e-05	0.0857	AGCCTCGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	-	11.9388	4.02e-05	0.0857	AGCCTCGGGGCC
TFAP2C	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	19	30	-	11.9388	4.02e-05	0.0857	CGCCCCAGGGAA
TFAP2C	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	54	-	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	61	72	+	11.9388	4.02e-05	0.0857	AGGCCGCGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	+	11.9388	4.02e-05	0.0857	AGCCTCGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	+	11.9388	4.02e-05	0.0857	AGCCTCGGGGCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	96	+	11.9388	4.02e-05	0.0857	CGCCCCAGGGAA
PAX9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	55	71	+	2.76364	4.02e-05	0.463	GGCCATGCAAGACTGAA
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.4255	4.02e-05	0.0838	AGCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.4255	4.02e-05	0.0838	AGCGGAAGTC
HNF4G	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	42	56	-	11.6731	4.02e-05	0.335	CGGGGCCGAAGGCCA
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	-	12.1154	4.02e-05	0.0703	GGCCGCAGGCG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	11	21	+	12	4.02e-05	0.233	TTTCAGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	11	21	+	12	4.02e-05	0.233	TTTCAGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	11	21	+	12	4.02e-05	0.233	TTTCAGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	11	21	+	12	4.02e-05	0.233	TTTCAGGGAAG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	18	29	+	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	18	29	+	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	18	29	+	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	18	29	+	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	25	-	10.4727	4.02e-05	0.0999	CTCCCGGAAGCT
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	25	-	10.4727	4.02e-05	0.0999	CTCCCGGAAGCT
ELF1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	45	56	+	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	59	70	-	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	59	70	-	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	59	70	-	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ELF1	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	90	101	+	10.4727	4.02e-05	0.0999	CTCCCGGAAGCT
ELF1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	86	97	-	10.4727	4.02e-05	0.0999	AGCCAGGAAGTC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	36	48	+	10.9714	4.03e-05	0.729	AACCCAGATGTAC
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	36	48	+	10.9714	4.03e-05	0.729	AACCCAGATGTAC
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	82	94	-	10.9714	4.03e-05	0.729	AACCCAGATGTAC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	-	11.2586	4.03e-05	0.0554	ACCCCGGGCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	-	11.2586	4.03e-05	0.0554	ACCCCGGGCGGCA
LBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.7458	4.03e-05	1	CCCAATTAAA
LBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.7458	4.03e-05	1	CCCAATTAAA
LBX2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.7458	4.03e-05	1	CCCAATTAAA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	12.069	4.03e-05	0.11	TCCGGAAATA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	12.069	4.03e-05	0.11	TCCGGAAATA
ETV4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	12.069	4.03e-05	0.11	TCCGGAAATA
ETV4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	12.069	4.03e-05	0.11	TCCGGAAATA
NRF1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	12	22	-	11.2909	4.03e-05	0.016	GCGTTTGCGCA
SNAI2	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	19	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	11	19	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	32	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	32	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	32	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	32	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	32	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	18	26	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	22	30	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	79	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	72	80	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	72	80	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	72	80	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	72	80	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	93	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	97	+	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	83	91	-	12.1163	4.03e-05	0.433	CGCAGGTGC
SNAI2	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	96	104	-	12.1163	4.03e-05	0.433	CGCAGGTGC
MEF2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	70	81	-	10.3548	4.03e-05	0.928	CCCAAAAATAGA
MEF2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	70	81	-	10.3548	4.03e-05	0.928	CCCAAAAATAGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	55	66	+	12.0364	4.03e-05	0.055	TGCCCTGGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	64	75	-	12.0364	4.03e-05	0.055	CGCCCTCGGCCC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	+	12	4.03e-05	0.0893	CGCCCGGAGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	+	12	4.03e-05	0.0893	CGCCCGGAGGCC
TFAP2B	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	+	12	4.03e-05	0.0893	CGCCCGGAGGCC
TFAP2B	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	-	12	4.03e-05	0.0893	CGCCCGGAGGCC
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	-	12	4.03e-05	0.0893	CGCCCGGAGGCC
HSF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	19	31	-	11.6463	4.03e-05	1	ATCTAGCAGTTTC
HSF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	19	31	-	11.6463	4.03e-05	1	ATCTAGCAGTTTC
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	28	39	+	11.7097	4.03e-05	1	TCATGCAAATCA
POU3F2	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	11	22	-	11.7097	4.03e-05	1	GTATGCAAAATA
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	33	44	-	11.7097	4.03e-05	1	TCATGCAAATCA
NFIL3	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	36	46	+	12.0707	4.03e-05	1	TGACGTAACCT
NFIL3	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	77	87	+	12.0707	4.03e-05	1	TGACGTAACCT
NFIL3	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	28	38	-	12.0707	4.03e-05	1	TGACGTAACCT
NFIL3	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	69	79	-	12.0707	4.03e-05	1	TGACGTAACCT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	17	31	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	17	31	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	17	31	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	17	31	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	17	31	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	8	22	-	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	8	22	-	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	8	22	-	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	8	22	-	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	28	42	+	9.68852	4.03e-05	0.0531	GACCCCACCCCCTGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	28	42	+	9.68852	4.03e-05	0.0531	GACCCCACCCCCTGC
Klf12	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	93	107	+	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
Klf12	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	84	98	-	9.68852	4.03e-05	0.0531	AGCCCCGCCCCAAGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	8	19	+	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	25	+	11.6842	4.03e-05	0.0272	TCCCCTCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	12	23	-	11.6842	4.03e-05	0.0272	GCCAGGCCCCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	36	+	11.6842	4.03e-05	0.0272	TCCCCTCCCCCT
SP8	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	17	28	-	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	21	32	-	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	43	54	-	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	46	57	-	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	46	57	-	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	61	72	+	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	87	98	+	11.6842	4.03e-05	0.0272	TCCCCGCCCCTT
SP8	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	92	103	+	11.6842	4.03e-05	0.0272	GCCAGGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	97	108	+	11.6842	4.03e-05	0.0272	TCCCCTCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	97	108	+	11.6842	4.03e-05	0.0272	TCCCCTCCCCCT
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	82	93	+	11.7115	4.03e-05	0.217	AAAAATGGCGCT
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	82	93	+	11.7115	4.03e-05	0.217	AAAAATGGCGCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	15	34	+	5.38532	4.03e-05	0.0527	CCACGCCCCCACCCCACCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	15	34	+	5.38532	4.03e-05	0.0527	CCACGCCCCCACCCCACCCT
FLI1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	11.9787	4.03e-05	0.102	TCCGGAAATA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	11.9787	4.03e-05	0.102	TCCGGAAATA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	11.9787	4.03e-05	0.102	TCCGGAAATA
FLI1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	11.9787	4.03e-05	0.102	TCCGGAAATA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.9787	4.03e-05	0.102	ACCGGAAGGC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.9787	4.03e-05	0.102	ACCGGAAGGC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.9787	4.03e-05	0.102	ACCGGAAGGC
Myog	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	39	+	12.7551	4.03e-05	0.137	AACAGCTGTGC
EGR1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	18	31	-	11.3462	4.03e-05	0.0184	TCTCCTCCCTCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	25	38	-	11.3462	4.03e-05	0.0184	GCCCAACCTCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	36	49	-	11.3462	4.03e-05	0.0184	CTCTTGCCCCCGCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	65	78	+	11.3462	4.03e-05	0.0184	CTCTTGCCCCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	72	85	+	11.3462	4.03e-05	0.0184	CCCTCGCCCTCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	76	89	+	11.3462	4.03e-05	0.0184	GCCCAACCTCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	73	86	-	11.3462	4.03e-05	0.0184	CAACTGCCCCCTCC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	4	15	-	11.3265	4.03e-05	0.165	TTCTTGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	4	15	-	11.3265	4.03e-05	0.165	TTCTTGGGGGTG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	4	15	-	11.3265	4.03e-05	0.165	TTCTTGGGGGTG
INSM1	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	100	111	+	11.3265	4.03e-05	0.165	TTCTTGGGGGTG
NR2F1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	32	44	+	12.2245	4.03e-05	0.383	GCGGGGTCAGGGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	43	55	+	12.2245	4.03e-05	0.383	GTAGGGTCACGTG
NR2F1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	71	83	-	12.2245	4.03e-05	0.383	GCGGGGTCAGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	+	11.5574	4.03e-05	0.0586	GGCCTGGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	+	11.5574	4.03e-05	0.0586	GGCCTGGGGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	-	11.5574	4.03e-05	0.0586	GGCCTGGGGGGCG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	75	84	-	11.8361	4.03e-05	0.718	GGTGCGGGTC
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	75	84	-	11.8361	4.03e-05	0.718	GGTGCGGGTC
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	50	63	+	4.83636	4.04e-05	0.162	AAGAAGAGGAAGAG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	50	63	+	4.83636	4.04e-05	0.162	AAGAAGAGGAAGAG
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	69	82	+	9.86364	4.04e-05	0.253	CTGCCACATCTGCT
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	69	82	+	9.86364	4.04e-05	0.253	CTGCCACATCTGCT
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	69	82	+	9.86364	4.04e-05	0.253	CTGCCACATCTGCT
CDX1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	58	66	-	11.3962	4.04e-05	1	ACAATAAAA
CDX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	49	57	+	11.3962	4.04e-05	1	ACAATAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	49	57	+	11.3962	4.04e-05	1	ACAATAAAA
CDX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	49	57	+	11.3962	4.04e-05	1	ACAATAAAA
CDX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	49	57	+	11.3962	4.04e-05	1	ACAATAAAA
TFAP4	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	-	12.1273	4.04e-05	0.655	CACAGCTGTC
TFAP4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	-	12.1273	4.04e-05	0.655	CACAGCTGTC
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	+	12.1273	4.04e-05	0.655	CACAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	+	12.1273	4.04e-05	0.655	CACAGCTGTC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	61	78	+	-11.3158	4.04e-05	0.0386	CGGGGAGAGGGAGGAGGG
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	51	70	-	8.44444	4.04e-05	1	ATGGGGGAGGGGTCCCTCCT
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	51	70	-	8.44444	4.04e-05	1	ATGGGGGAGGGGTCCCTCCT
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	24	40	-	4.90164	4.04e-05	0.563	CGTCCAGACCAAGGTCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	75	91	+	4.90164	4.04e-05	0.563	CGTCCAGACCAAGGTCA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	75	91	+	4.90164	4.04e-05	0.563	CGTCCAGACCAAGGTCA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	75	91	+	4.90164	4.04e-05	0.563	CGTCCAGACCAAGGTCA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	75	91	+	4.90164	4.04e-05	0.563	CGTCCAGACCAAGGTCA
THAP1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	31	39	+	10.5526	4.04e-05	0.215	TTGCCCTCA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	27	35	-	10.5526	4.04e-05	0.215	CTGCCCATA
THAP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	27	35	-	10.5526	4.04e-05	0.215	CTGCCCATA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	27	35	-	10.5526	4.04e-05	0.215	CTGCCCATA
THAP1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	27	35	-	10.5526	4.04e-05	0.215	CTGCCCATA
THAP1	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	80	88	+	10.5526	4.04e-05	0.215	CTGCCCATA
SP4	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	2	18	-	5.67273	4.04e-05	0.0233	CCGGCCCCGCCCTGCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	17	33	-	5.67273	4.04e-05	0.0233	CCGGCCCCGCCCTGCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	47	63	+	5.67273	4.04e-05	0.0233	CCCCCCCCGCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	47	63	+	5.67273	4.04e-05	0.0233	CCCCCCCCGCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	47	63	+	5.67273	4.04e-05	0.0233	CCCCCCCCGCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	47	63	+	5.67273	4.04e-05	0.0233	CCCCCCCCGCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	60	76	+	5.67273	4.04e-05	0.0233	CAAGTTCCGCCCACCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	60	76	+	5.67273	4.04e-05	0.0233	CAAGTTCCGCCCACCTG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	102	112	-	11.8182	4.04e-05	1	CAAGTGTGAAA
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	102	112	-	11.8182	4.04e-05	1	CAAGTGTGAAA
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	36	46	+	11.8182	4.04e-05	1	CAAGTGTGAAA
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	36	46	+	11.8182	4.04e-05	1	CAAGTGTGAAA
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	36	46	+	11.8182	4.04e-05	1	CAAGTGTGAAA
TBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	36	46	+	11.8182	4.04e-05	1	CAAGTGTGAAA
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	78	89	-	12.2	4.04e-05	0.923	TGTTTACTGTAG
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	9	20	-	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	9	20	-	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	9	20	-	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	9	20	-	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	27	38	+	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	77	88	-	5.13793	4.04e-05	0.189	TGACACGGGCCT
HES7	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	95	106	+	5.13793	4.04e-05	0.189	TGACACGGGCCT
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	11.7455	4.04e-05	0.0971	ACCGGATATG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	11.7455	4.04e-05	0.0971	ACCGGATATG
ETV5	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	11.7455	4.04e-05	0.0971	CCCGGAAGTA
ETV5	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	11.7455	4.04e-05	0.0971	AGCGGAAGCA
ETV5	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	67	76	+	11.7455	4.04e-05	0.0971	GCCGGATGCC
ETV5	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	11.7455	4.04e-05	0.0971	AGCGGAAGCA
ETV5	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	11.7455	4.04e-05	0.0971	CCCGGAAGTA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	2	12	-	12.2182	4.04e-05	0.0515	GGCCCCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	14	24	-	12.2182	4.04e-05	0.0515	GGCCCCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	14	24	-	12.2182	4.04e-05	0.0515	GGCCCCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	55	65	+	12.2182	4.04e-05	0.0515	GGCCCCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	55	65	+	12.2182	4.04e-05	0.0515	GGCCCCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	82	92	+	12.2182	4.04e-05	0.0515	CCCCGCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	82	92	+	12.2182	4.04e-05	0.0515	CCCCGCAGGCG
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	28	41	-	11.7097	4.04e-05	0.411	TTTCCTGGAGGTGG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	28	41	-	11.7097	4.04e-05	0.411	TTTCCTGGAGGTGG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	28	41	-	11.7097	4.04e-05	0.411	TTTCCTGGAGGTGG
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	28	41	-	11.7097	4.04e-05	0.411	TTTCCTGGAGGTGG
Bach1::Mafk	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	46	60	+	8.82895	4.04e-05	0.224	TCGCTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	55	69	-	8.82895	4.04e-05	0.224	TCGCTGACTCCGCCC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	55	69	-	8.82895	4.04e-05	0.224	TCGCTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	55	69	-	8.82895	4.04e-05	0.224	TCGCTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	55	69	-	8.82895	4.04e-05	0.224	TCGCTGACTCCGCCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	+	11.4098	4.04e-05	0.0641	CGCCCCCACGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	+	11.4098	4.04e-05	0.0641	CGCCCCCACGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	+	11.4098	4.04e-05	0.0641	CGCCCCCACGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	+	11.4098	4.04e-05	0.0641	CGCCCCCACGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	+	11.4098	4.04e-05	0.0641	AGCCCCACAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	+	11.4098	4.04e-05	0.0641	AGCCCCACAGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	+	11.4098	4.04e-05	0.0641	AGCCCCACAGGGA
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	+	11.4098	4.04e-05	0.0641	ACCCCGGCGGGGA
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	-	11.4098	4.04e-05	0.0641	TGCCTGTCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	-	11.4098	4.04e-05	0.0641	TCCCTGTGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	-	11.4098	4.04e-05	0.0641	TCCCTGTGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	-	11.4098	4.04e-05	0.0641	TCCCTGTGGGGCT
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	+	11.4098	4.04e-05	0.0641	TGCCTGTCGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	-	11.4098	4.04e-05	0.0641	TGCCTGTCGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	+	11.4098	4.04e-05	0.0641	TGCCTGTCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	-	11.4098	4.04e-05	0.0641	ACCCCGGCGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	-	11.4098	4.04e-05	0.0641	ACCCCGGCGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	-	11.4098	4.04e-05	0.0641	ACCCCGGCGGGGA
SREBF1	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	53	62	-	12.378	4.04e-05	0.472	CTCACGTCAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	54	63	-	12.378	4.04e-05	0.472	CTCACGTCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	54	63	-	12.378	4.04e-05	0.472	CTCACGTCAC
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	72	81	-	12.378	4.04e-05	0.472	CTCACGTCAC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	23	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
Tcf12	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	59	+	12.7755	4.04e-05	0.158	AACAGGTGGGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	11	23	+	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	11	23	+	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
ELF3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	41	53	+	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	62	74	-	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	62	74	-	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
ELF3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	92	104	-	9.7069	4.04e-05	0.134	CGCCCGGAAGTGC
Tcf7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	41	52	-	10.5323	4.04e-05	1	ATAAATCAAAGG
Tcf7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	41	52	-	10.5323	4.04e-05	1	ATAAATCAAAGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	50	69	-	5.37615	4.04e-05	0.0528	CCCCCATACAAAGCCCTCCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	13	23	-	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	13	23	-	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	13	23	-	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	13	23	-	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	39	49	+	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	66	76	-	10.6724	4.04e-05	0.0799	ACGCCCCCACA
EGR2	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	92	102	+	10.6724	4.04e-05	0.0799	ACGCCCCCACA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	102	+	11.6327	4.04e-05	0.285	AGGCACGTGTT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	102	+	11.6327	4.04e-05	0.285	AGGCACGTGTT
RFX4	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	-	10.9697	4.04e-05	0.234	CGTTTCCAGGGCCACC
RFX4	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	+	10.9697	4.04e-05	0.234	CGTTTCCAGGGCCACC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	80	91	+	10.3934	4.04e-05	0.0972	GACCCGGAAACG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	80	91	+	10.3934	4.04e-05	0.0972	GACCCGGAAACG
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	35	-	10.3934	4.04e-05	0.0972	GACCCGGAAACG
NFIC::TLX1	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	29	42	+	7.13265	4.05e-05	0.365	TGGGTGGAGGCCAA
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	1	10	-	11.6364	4.05e-05	0.165	TGAGGGGAAA
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	24	33	-	11.6364	4.05e-05	0.165	TGAGGGGAAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	61	70	-	11.6364	4.05e-05	0.165	TGAGGGGAAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	61	70	-	11.6364	4.05e-05	0.165	TGAGGGGAAA
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	18	28	+	12.3091	4.05e-05	0.169	TTGTGAGTCAG
SCRT1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	58	72	+	8.93443	4.05e-05	0.713	CAGCCACAGGTCTCA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	32	42	+	12.3878	4.05e-05	0.192	ATGTGACTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	30	40	-	12.3878	4.05e-05	0.192	ATGTGACTCAC
Rarb(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	95	111	-	-0.227273	4.05e-05	0.785	CGGCCATGCTGACGTCA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	15	25	+	11.918	4.05e-05	0.0505	CCGGAACTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	15	25	+	11.918	4.05e-05	0.0505	CCGGAACTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	15	25	+	11.918	4.05e-05	0.0505	CCGGAACTGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	15	25	+	11.918	4.05e-05	0.0505	CCGGAACTGCG
Mitf	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	57	66	+	11.398	4.05e-05	0.228	CATCACGAGG
Mitf	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	49	58	-	11.398	4.05e-05	0.228	CATCACGAGG
PROX1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	10	21	+	10.0545	4.05e-05	1	CACGGCGTCTTG
PROX1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	38	49	+	10.0545	4.05e-05	1	CACGGCGTCTTG
PROX1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	74	85	+	10.0545	4.05e-05	1	CACGGCGTCTTG
PROX1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	94	105	-	10.0545	4.05e-05	1	CACGGCGTCTTG
MSC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	34	+	11.4756	4.05e-05	0.569	GCCAGCTGTC
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	33	-	11.4756	4.05e-05	0.569	GCCAGCTGTC
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	33	-	11.4756	4.05e-05	0.569	GCCAGCTGTC
MSC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	38	-	11.4756	4.05e-05	0.569	GCCAGCTGTC
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	24	37	+	8.88571	4.05e-05	0.151	TTGTGACGTAAGCC
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	54	67	+	8.88571	4.05e-05	0.151	TTGTGACGTAAGCC
JUND	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	-	12	4.05e-05	0.191	AATGAGTCAGC
SP2	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	65	79	+	11.4828	4.05e-05	0.0106	GTTCCTCCCTTCTCC
SP2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	93	+	11.4828	4.05e-05	0.0106	CCCCCACCCACATCC
SP2	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	87	101	+	11.4828	4.05e-05	0.0106	CCCCCGCCTCGCATG
SP2	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	14	28	-	11.4828	4.05e-05	0.0106	CCCCCGCCTCGCATG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	21	35	-	11.4828	4.05e-05	0.0106	ACTCCGCCCTCCTGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	21	35	-	11.4828	4.05e-05	0.0106	ACTCCGCCCTCCTGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	21	35	-	11.4828	4.05e-05	0.0106	TCCCCTCCCAGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	21	35	-	11.4828	4.05e-05	0.0106	TCCCCTCCCAGCCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	22	36	-	11.4828	4.05e-05	0.0106	CCCCCACCCACATCC
SP2	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	36	50	-	11.4828	4.05e-05	0.0106	GTTCCTCCCTTCTCC
mix-a	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	33	43	-	12.3175	4.05e-05	1	AGTTAATTATT
mix-a	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	69	79	+	12.3175	4.05e-05	1	GATTAATTAAC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	18	38	+	10.2097	4.05e-05	0.165	GCCTTTTTTCTTTTTTTTTTT
IRF1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	29	49	-	10.2097	4.05e-05	0.165	CCCCTCTTTTTTTTTTTTTTC
IRF1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	66	86	+	10.2097	4.05e-05	0.165	CCCCTCTTTTTTTTTTTTTTC
ETV2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	24	34	+	11.6721	4.05e-05	0.14	AACAGGAAACT
ETV2	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	67	77	+	11.6721	4.05e-05	0.14	AACAGGAAACT
ETV2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	81	91	-	11.6721	4.05e-05	0.14	AACAGGAAACT
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	74	85	+	11.7069	4.05e-05	0.365	CCGACCACCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	76	86	+	12.3636	4.05e-05	0.721	GGCCACTCCGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	69	87	-	9.86885	4.05e-05	0.113	CCGCCTCTGGGTGACGCAC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	81	99	-	9.86885	4.05e-05	0.113	GCGCCGCTAGGGGATGCAG
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	29	39	-	12.1091	4.05e-05	0.174	TATGACTCATT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	33	53	-	10.6327	4.05e-05	0.0149	AGGGGAGGAGGGCAGGAGGCT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	33	53	-	10.6327	4.05e-05	0.0149	AGGGGAGGAGGGCAGGAGGCT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	52	72	-	10.6327	4.05e-05	0.0149	AAGGAAGGCGGGGCCGGAGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	59	79	-	10.6327	4.05e-05	0.0149	GGAGGCGGGTTCTGCGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	14	34	+	10.6327	4.05e-05	0.0149	AGAGGTGAGGTGGAGAGAAAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	20	40	+	10.6327	4.05e-05	0.0149	AAAGGGAGGGGGAGAGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	26	46	+	10.6327	4.05e-05	0.0149	AAGGAAGGCGGGGCCGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	30	50	+	10.6327	4.05e-05	0.0149	GGAGGAGGCGGAGGATGTTCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	30	50	+	10.6327	4.05e-05	0.0149	GGAGGAGGCGGAGGATGTTCC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	30	50	+	10.6327	4.05e-05	0.0149	GGAGGAGGCGGAGGATGTTCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	30	50	+	10.6327	4.05e-05	0.0149	GGAGGAGGCGGAGGATGTTCC
Klf4	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	58	67	+	11.898	4.05e-05	0.0179	GGGGTGTGGA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	70	79	+	11.898	4.05e-05	0.0179	GGGGTGTGGA
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	70	79	+	11.898	4.05e-05	0.0179	GGGGTGTGGA
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	70	80	+	12	4.05e-05	0.157	AGCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	70	80	+	12	4.05e-05	0.157	AGCATGTGACA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	-	11.2414	4.05e-05	0.0554	CGCCCAAAGGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	-	11.2414	4.05e-05	0.0554	CGCCTGTGGGGCG
EGR3	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	49	63	-	8	4.05e-05	0.0362	ACGCGCCCGCGCACG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	20	39	-	5.36697	4.05e-05	0.0528	CCCTGAATCACCACCCCTCG
HINFP	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	37	48	+	11.697	4.06e-05	0.109	CGGCCTCCGCGC
HINFP	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	35	46	-	11.697	4.06e-05	0.109	CGGCGTCCCCTT
HINFP	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	67	78	-	11.697	4.06e-05	0.109	CGGCCTCCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	96	107	+	11.697	4.06e-05	0.109	CGGCCTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	96	107	+	11.697	4.06e-05	0.109	CGGCCTCCGCGC
POU3F3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	55	67	-	11.7	4.06e-05	1	TTTATGTATATTT
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	55	67	-	11.7	4.06e-05	1	TTTATGTATATTT
POU3F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	59	71	+	11.7	4.06e-05	1	TTTATGTATATTT
POU3F3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	59	71	+	11.7	4.06e-05	1	TTTATGTATATTT
KLF14	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	29	42	+	10.1034	4.06e-05	0.0292	CGCCCCGCCTCCTG
KLF14	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	32	45	-	10.1034	4.06e-05	0.0292	GGCCCCGCCCAGAT
KLF14	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	70	83	+	10.1034	4.06e-05	0.0292	GGCCCCGCCCAGAT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	69	82	-	10.1034	4.06e-05	0.0292	GACCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	69	82	-	10.1034	4.06e-05	0.0292	GACCCCGCCCCGCC
KLF14	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	73	86	-	10.1034	4.06e-05	0.0292	CGCCCCGCCTCCTG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	33	43	+	11.9455	4.06e-05	0.13	AACAGGAAGCA
ELF5	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	52	62	+	11.9455	4.06e-05	0.13	GCCAGGAAGTA
ELF5	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	53	63	-	11.9455	4.06e-05	0.13	GCCAGGAAGTA
ELF5	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	74	84	+	11.9455	4.06e-05	0.13	AACAGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	66	76	-	11.9455	4.06e-05	0.13	AACAGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	66	76	-	11.9455	4.06e-05	0.13	AACAGGAAGCA
ELF5	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	95	-	11.9455	4.06e-05	0.13	AACAGGAAGCA
RFX5	FLIPPED__Antisense.flip.antisense__chr2:122407144..122407258,-__2663.1.0.0	54	69	+	8.05172	4.06e-05	0.238	CGTTACCATAGAGAGG
RFX5	WILDTYPE__Antisense.flip.sense__chr2:122407144..122407258,+__394.1.0.0	46	61	-	8.05172	4.06e-05	0.238	CGTTACCATAGAGAGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	6	20	-	9.67213	4.06e-05	0.0531	AGCCCCGCCCCGCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	6	20	-	9.67213	4.06e-05	0.0531	AGCCCCGCCCCGCCT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	6	20	-	9.67213	4.06e-05	0.0531	AGCCCCGCCCCGCCT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	6	20	-	9.67213	4.06e-05	0.0531	AGCCCCGCCCCGCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	62	72	+	11.8788	4.06e-05	0.0469	GACCCCTCCCA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	4	19	-	11.2	4.06e-05	0.0374	CCACTCCCATGCATGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	4	19	-	11.2	4.06e-05	0.0374	CCACTCCCATGCATGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	4	19	-	11.2	4.06e-05	0.0374	CCACTCCCATGCATGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	4	19	-	11.2	4.06e-05	0.0374	CCACTCCCATGCATGC
EGR4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	19	34	-	11.2	4.06e-05	0.0374	CCACCCCCACCCCCGC
EGR4	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	37	52	-	11.2	4.06e-05	0.0374	CCCCACCCCCGCCCCA
EGR4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	81	96	+	11.2	4.06e-05	0.0374	CCACCCCCACCCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	33	+	11.7967	4.06e-05	0.0178	GCCCCTCCCAT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	33	+	11.7967	4.06e-05	0.0178	GCCCCTCCCAT
SP3	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	36	46	+	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	55	65	+	11.7967	4.06e-05	0.0178	GCCCCTCCCAT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	55	65	+	11.7967	4.06e-05	0.0178	GCCCCTCCCAT
SP3	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	89	99	+	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	97	107	+	11.7967	4.06e-05	0.0178	GCCCCCCCCAC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	8	18	-	11.7967	4.06e-05	0.0178	GCCCCCCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	16	26	-	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	16	26	-	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	16	26	-	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	16	26	-	11.7967	4.06e-05	0.0178	ACTACGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	22	32	-	11.7967	4.06e-05	0.0178	GCCCCTCCCAT
SP3	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	69	79	-	11.7967	4.06e-05	0.0178	ACTACGCCCCC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	8	18	-	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	16	26	-	12.3621	4.06e-05	0.0534	GGGAGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	16	26	-	12.3621	4.06e-05	0.0534	GGGAGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	34	44	+	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	34	44	+	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	41	51	-	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	41	51	-	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	64	74	+	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
E2F6	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	71	81	-	12.3621	4.06e-05	0.0534	AGGAGGGAGCA
REST	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	83	103	-	6.5102	4.06e-05	0.208	GTTAGCGCCAGGGGCTGCGGC
REST	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	12	32	+	6.5102	4.06e-05	0.208	GTTAGCGCCAGGGGCTGCGGC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	38	48	+	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	38	48	+	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	38	48	+	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	38	48	+	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	63	73	+	11.2727	4.06e-05	0.016	GCCCGGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	68	78	+	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	1	11	-	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	1	11	-	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	37	47	-	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	37	47	-	11.2727	4.06e-05	0.016	CCGCGGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	42	52	-	11.2727	4.06e-05	0.016	GCCCGGGCGCA
YY2	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	12	22	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	13	23	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	13	23	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	15	25	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	17	27	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	17	27	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	17	27	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	17	27	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	17	27	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	18	28	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	9	19	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	96	106	+	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	87	97	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	87	97	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	88	98	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	88	98	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	88	98	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	88	98	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	90	100	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	90	100	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	90	100	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	90	100	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	90	100	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	91	101	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	91	101	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	91	101	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	91	101	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	91	101	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	92	102	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	92	102	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	93	103	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	93	103	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	97	107	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	97	107	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	98	108	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	103	113	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	103	113	-	12.1061	4.06e-05	0.269	CGCCGCCATCT
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	5	19	-	7.30337	4.06e-05	0.242	GGACCCCTGGCTGCA
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	5	19	-	7.30337	4.06e-05	0.242	GGACCCCTGGCTGCA
TCF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	12.898	4.06e-05	0.422	AACACCTGCT
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	29	40	+	12.0333	4.06e-05	1	TGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	29	40	+	12.0333	4.06e-05	1	TGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	29	40	+	12.0333	4.06e-05	1	TGATGCAATCGG
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	29	40	+	12.0333	4.06e-05	1	TGATGCAATCGG
SPIC	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	23	36	+	11.7042	4.06e-05	0.215	TCCAACAGGAAGTC
SPIC	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	92	-	11.7042	4.06e-05	0.215	TCCAACAGGAAGTC
Ascl2	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	-	12.0286	4.06e-05	0.187	GACAGCTGCG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	-	12.0286	4.06e-05	0.187	GACAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	21	30	+	12.0286	4.06e-05	0.187	GACAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	21	30	+	12.0286	4.06e-05	0.187	GACAGCTGCA
Ascl2	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	+	12.0286	4.06e-05	0.187	GACAGCTGCG
SP1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	18	28	+	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	19	29	-	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	41	+	11.9808	4.06e-05	0.0121	GCCCTGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	41	+	11.9808	4.06e-05	0.0121	GCCCTGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	22	32	-	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	22	32	-	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	43	53	-	11.9808	4.06e-05	0.0121	CCCCCTCCTAC
SP1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	70	+	11.9808	4.06e-05	0.0121	GCCCTGCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	62	72	+	11.9808	4.06e-05	0.0121	CCCCCTCCTAC
SP1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	81	91	+	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	86	96	+	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	89	99	+	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	87	97	-	11.9808	4.06e-05	0.0121	CTCCCTCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	91	101	-	11.9808	4.06e-05	0.0121	GCCCTGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	25	35	+	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	25	35	+	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	66	76	+	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
KLF16	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	94	+	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
KLF16	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	21	31	-	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	25	35	-	11.5345	4.06e-05	0.0162	ACCCCGCCCTC
NFYA	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	20	37	-	10.3902	4.06e-05	0.132	CGCCTTCCAATTGGCCTG
NFYA	WILDTYPE__mrna.flip.sense__chr9:77643296..77643410,-__1124.1.0.0	53	70	+	10.3902	4.06e-05	0.132	CGCATGCGCATTGGTTCT
NFYA	FLIPPED__mrna.flip.antisense__chr9:77643296..77643410,+__2469.1.0.0	45	62	-	10.3902	4.06e-05	0.132	CGCATGCGCATTGGTTCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	70	81	-	11.8871	4.06e-05	0.281	CCGCCCACCGTG
NFIX	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	3	11	+	10.5957	4.07e-05	0.758	GTTGCCAAG
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	21	32	-	10.2182	4.07e-05	0.183	TGTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	21	32	-	10.2182	4.07e-05	0.183	TGTGACGTCAGC
YY1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	97	108	-	11.6923	4.07e-05	0.217	TGAGATGGCGGC
YY1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	7	18	+	11.6923	4.07e-05	0.217	TGAGATGGCGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	73	91	-	11.4355	4.07e-05	0.147	GCGGGCAGGCATGCGAGCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	73	91	-	11.4355	4.07e-05	0.147	GCGGGCAGGCATGCGAGCC
Hmx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	14	30	+	11.7561	4.07e-05	1	AAGAGTAATTAAGGCTG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	45	56	-	11.8	4.07e-05	0.217	GGCAACCACAAA
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	7	18	+	11.8	4.07e-05	0.217	CCCGCCCACCTG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	18	29	+	11.8	4.07e-05	0.217	GGCAACCACAAA
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	56	67	+	11.8	4.07e-05	0.217	CCCGCCCACCTG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	47	59	-	4.14286	4.07e-05	0.233	AGGGGATTTCGCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	47	59	-	4.14286	4.07e-05	0.233	AGGGGATTTCGCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	47	59	-	4.14286	4.07e-05	0.233	AGGGGATTTCGCT
NFKB1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	56	68	+	4.14286	4.07e-05	0.233	AGGGGATTTCGCT
KLF5	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	33	42	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	44	53	-	12.2449	4.07e-05	0.0179	ACCACACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	88	97	-	12.2449	4.07e-05	0.0179	ACCACACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	94	103	-	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	100	109	-	12.2449	4.07e-05	0.0179	ACCACACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	100	109	-	12.2449	4.07e-05	0.0179	ACCACACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	12	21	+	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	18	27	+	12.2449	4.07e-05	0.0179	ACCACACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	36	45	+	12.2449	4.07e-05	0.0179	CCCACACCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	62	71	+	12.2449	4.07e-05	0.0179	ACCACACCCC
Hoxb5	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	68	83	+	11.8701	4.07e-05	1	AGATTAATTAACAGAA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	-	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	-	12.0962	4.07e-05	0.0703	GGCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	37	47	+	12.0962	4.07e-05	0.0703	ACCCCGAGGCA
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	+	12.0962	4.07e-05	0.0703	CGCCGCGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	-	11.541	4.07e-05	0.0586	CGCCCACCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	-	11.541	4.07e-05	0.0586	CGCCCACCGGGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	-	11.541	4.07e-05	0.0586	AGCCCCGGCGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	+	11.541	4.07e-05	0.0586	TGCCCTTCCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	+	11.541	4.07e-05	0.0586	TGCCCTTCCGGCG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	8	23	+	3.53448	4.07e-05	0.306	GTCCCGCCATCCCCCG
ELF3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	7	19	-	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	13	25	-	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	13	25	-	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	13	25	-	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	60	72	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	60	72	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	65	77	+	9.68966	4.07e-05	0.134	GAGCCGGAAGCTG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	65	77	+	9.68966	4.07e-05	0.134	GAGCCGGAAGCTG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	65	77	+	9.68966	4.07e-05	0.134	GAGCCGGAAGCTG
ELF3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	90	102	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	96	108	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	96	108	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	96	108	+	9.68966	4.07e-05	0.134	TTCCCGGATGTGG
NHLH1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	+	11.8621	4.07e-05	0.123	GACAGCTGCG
NHLH1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	-	11.8621	4.07e-05	0.123	GACAGCTGCG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	-	11.8621	4.07e-05	0.123	GACAGCTGCG
ATF7	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	38	51	-	8.87143	4.07e-05	0.151	CAGTGACATCACCC
ATF7	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	82	95	-	8.87143	4.07e-05	0.151	CAGTGACATCACCC
ATF7	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	20	33	+	8.87143	4.07e-05	0.151	CAGTGACATCACCC
ATF7	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	64	77	+	8.87143	4.07e-05	0.151	CAGTGACATCACCC
ATF7	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	70	83	+	8.87143	4.07e-05	0.151	CCCTGACGTCAGCC
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	9	21	+	11.6939	4.07e-05	0.301	TTGATGAGCTCAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	9	21	+	11.6939	4.07e-05	0.301	TTGATGAGCTCAT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	34	51	+	-11.3421	4.07e-05	0.0389	TGAGGGCAGGAAGGAGTT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	12	29	-	-11.3421	4.07e-05	0.0389	TGAGGGCAGGAAGGAGTT
EGR1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	39	52	+	11.3269	4.07e-05	0.0185	TCTCCACCCCCATG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	37	50	-	11.3269	4.07e-05	0.0185	ATACCGCCTCCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	63	76	+	11.3269	4.07e-05	0.0185	ATACCGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	59	72	-	11.3269	4.07e-05	0.0185	CGGCCGCCGCCGTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	59	72	-	11.3269	4.07e-05	0.0185	CGGCCGCCGCCGTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	63	76	-	11.3269	4.07e-05	0.0185	TCTCCACCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	63	76	-	11.3269	4.07e-05	0.0185	TCTCCACCCCCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	+	12.0909	4.07e-05	0.174	CGTGAGTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	+	12.0909	4.07e-05	0.174	CGTGAGTCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	-	12.0909	4.07e-05	0.174	CGTGAGTCATG
E2F4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	12	22	+	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	13	23	+	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	13	23	+	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	93	103	-	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	93	103	-	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	93	103	-	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	93	103	-	12.1034	4.07e-05	0.0458	GGGCGCGAGCC
PPARG	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	46	65	+	8.42222	4.07e-05	1	GAGGGGCTAGGTGACCCACC
PPARG	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	17	36	-	8.42222	4.07e-05	1	GAGGGGCTAGGTGACCCACC
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	45	57	-	11.0909	4.07e-05	0.774	GTTACTTAGTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	45	57	-	11.0909	4.07e-05	0.774	GTTACTTAGTAAC
SOX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	44	-	-9.89394	4.07e-05	1	TAACAATATCATTGCA
SOX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	44	-	-9.89394	4.07e-05	1	TAACAATATCATTGCA
JUND	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	+	11.9787	4.07e-05	0.191	TGTGAGTCACT
JUND	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	+	11.9787	4.07e-05	0.191	TGTGAGTCACT
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	29	39	+	11.6122	4.07e-05	0.285	GGGCACGCGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	36	-	11.6122	4.07e-05	0.285	GGGCACGCGGC
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	5	22	+	6.91743	4.07e-05	0.611	TGAGAATGAAAGCTTCTC
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	5	22	+	6.91743	4.07e-05	0.611	TGAGAATGAAAGCTTCTC
IRF2	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	93	110	-	6.91743	4.07e-05	0.611	TGAGAATGAAAGCTTCTC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	14	28	-	-0.381818	4.07e-05	0.516	CTAGGAACTGAAACC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	84	98	+	-0.381818	4.07e-05	0.516	CTAGGAACTGAAACC
STAT3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	75	85	+	11.9796	4.07e-05	0.234	TTTCTGAGAAG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	58	72	+	11.3091	4.07e-05	0.109	GCCCGCCCGCAGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	58	72	+	11.3091	4.07e-05	0.109	GCCCGCCCGCAGGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	31	42	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	31	42	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	55	66	+	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	48	59	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	49	60	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	49	60	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	49	60	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	69	80	+	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	73	84	-	11.6711	4.08e-05	0.0272	CCCCCGCCTCCC
CEBPD	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	+	12.1346	4.08e-05	0.805	ATTACGTAAT
CEBPD	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	-	12.1346	4.08e-05	0.805	ATTACGTAAT
CEBPD	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	+	12.1346	4.08e-05	0.805	ATTGTGCAAC
E2F6	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	19	29	+	12.3448	4.08e-05	0.0534	GAGAGGGAGGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	65	75	+	12.3448	4.08e-05	0.0534	GAGAGGGAGGA
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.3143	4.08e-05	0.212	GGCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.3143	4.08e-05	0.212	GGCACGTGGC
EGR3	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	18	32	-	7.98276	4.08e-05	0.0363	TTCCTCCGACGCACT
EGR3	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	83	97	+	7.98276	4.08e-05	0.0363	TTCCTCCGACGCACT
IRF1	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	28	48	+	10.1935	4.08e-05	0.165	GTTGAGTTTTACTTCTGCCTC
IRF1	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	67	87	-	10.1935	4.08e-05	0.165	GTTGAGTTTTACTTCTGCCTC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	29	39	+	12.3673	4.08e-05	0.192	TCATGACTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	29	39	+	12.3673	4.08e-05	0.192	TCATGACTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	31	41	-	12.3673	4.08e-05	0.192	TCATGACTCAT
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	15	25	+	11.9636	4.08e-05	0.757	ACGGTAGCAGG
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	15	25	+	11.9636	4.08e-05	0.757	ACGGTAGCAGG
Foxq1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	46	56	+	12.3878	4.08e-05	1	TGCTGTTTATT
Foxq1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	46	56	+	12.3878	4.08e-05	1	TGCTGTTTATT
Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	17	30	+	4.70732	4.08e-05	0.413	CAGGCTAGAGGTCA
Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	75	-	4.70732	4.08e-05	0.413	CAGGCTAGAGGTCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	+	11.3934	4.08e-05	0.0641	AGCCCGCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	+	11.3934	4.08e-05	0.0641	AGCCCGCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	+	11.3934	4.08e-05	0.0641	AGCCCGCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	+	11.3934	4.08e-05	0.0641	AGCCCGCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	+	11.3934	4.08e-05	0.0641	AGCCCGCCCGGCA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	61	74	-	7.13265	4.08e-05	0.0714	GTGGCCACCAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	61	74	-	7.13265	4.08e-05	0.0714	GTGGCCACCAGGGG
ZBTB33	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	33	47	-	11.3333	4.08e-05	0.0951	CTCCCGCGGCTTCTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	34	48	-	11.3333	4.08e-05	0.0951	CTCCCGCGGCGTCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	34	48	-	11.3333	4.08e-05	0.0951	CTCCCGCGGCGTCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	63	77	+	11.3333	4.08e-05	0.0951	CCCTCGCGGTCATTC
TP53	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	+	7.93878	4.08e-05	0.979	TGCAAGCCGCCACTTGTT
TP53	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	+	7.93878	4.08e-05	0.979	TGCAAGCCGCCACTTGTT
TP53	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	+	7.93878	4.08e-05	0.979	TGCAAGCCGCCACTTGTT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	49	63	-	9.41429	4.08e-05	0.105	ACCCACCTGCGGCTT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	49	63	-	9.41429	4.08e-05	0.105	ACCCACCTGCGGCTT
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	11.0345	4.08e-05	0.241	AGCACGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	11.0345	4.08e-05	0.241	AGCACGTGAC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	+	12.3404	4.08e-05	0.211	TCTGAGTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	+	12.3404	4.08e-05	0.211	TCTGAGTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	+	12.3404	4.08e-05	0.211	TCTGAGTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	-	12.3404	4.08e-05	0.211	TCTGAGTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	-	12.3404	4.08e-05	0.211	TCTGAGTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	-	12.3404	4.08e-05	0.211	TCTGAGTCACA
ELF4	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	26	37	+	10.377	4.08e-05	0.0972	TGGCCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	37	48	+	10.377	4.08e-05	0.0972	AAGCCGGACGTG
ELF4	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	61	72	+	10.377	4.08e-05	0.0972	AAGCCGGACGTG
ELF4	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	43	54	-	10.377	4.08e-05	0.0972	AAGCCGGACGTG
ELF4	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	67	78	-	10.377	4.08e-05	0.0972	AAGCCGGACGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	89	-	10.377	4.08e-05	0.0972	TGGCCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	89	-	10.377	4.08e-05	0.0972	TGGCCGGAAGTG
Klf12	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	80	94	+	9.65574	4.08e-05	0.0533	AACCAAGCCCTCCAG
HEY1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	12.1636	4.08e-05	0.133	AGCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	12.1636	4.08e-05	0.133	AGCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	12.1636	4.08e-05	0.133	AGCACGTGGC
HEY1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	12.1636	4.08e-05	0.133	AGCACGTGGC
RORA	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	26	35	-	12.6742	4.08e-05	0.973	TAAAAGGTCA
RORA	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	73	82	+	12.6742	4.08e-05	0.973	TAAAAGGTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	52	68	+	5.63636	4.08e-05	0.0235	CCCGCCCCCCCCCCCCG
HOXD11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	12	21	-	12.2958	4.08e-05	1	GTCGTAAACC
HOXD11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	94	103	+	12.2958	4.08e-05	1	GTCGTAAACC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	96	114	+	9.85246	4.08e-05	0.113	CCGCCGGTAGGTGCTGCCA
Foxo1	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	12	22	+	12.3793	4.08e-05	0.895	CCCTGTTTTCT
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	34	44	-	12.3793	4.08e-05	0.895	GCCTGTTTCCA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	24	37	-	11.8788	4.08e-05	0.0496	GCCCTCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	24	37	-	11.8788	4.08e-05	0.0496	GCCCTCGGGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	24	37	-	11.8788	4.08e-05	0.0496	GCCCTCGGGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	24	37	-	11.8788	4.08e-05	0.0496	GCCCTCGGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	24	37	-	11.8788	4.08e-05	0.0496	GCCCTCGGGGCCTC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	12.2308	4.08e-05	0.131	CCCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	12.2308	4.08e-05	0.131	CCCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	12.2308	4.08e-05	0.131	CCCACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	12.2308	4.08e-05	0.131	CCCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	12.2308	4.08e-05	0.131	CCCACGTGCC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	95	105	-	12.7551	4.08e-05	0.158	CACAGCTGCTT
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.1.0	23	37	+	11.3387	4.08e-05	1	TTTGGTTTTGCAAAG
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.0.0	23	37	+	11.3387	4.08e-05	1	TTTGGTTTTGCAAAG
TEAD1	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	34	43	+	11.7742	4.08e-05	0.973	AGCATTCCAC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	88	98	-	10.6379	4.09e-05	0.0799	GCGCCCACTCG
SP2	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	25	39	+	11.4655	4.09e-05	0.0106	CTCCTGCCCCCCGAC
SP2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	47	61	+	11.4655	4.09e-05	0.0106	CTCCCACCTCGGCCC
SP2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	84	98	+	11.4655	4.09e-05	0.0106	CTCCCACCTCGGCCC
SP2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	17	31	-	11.4655	4.09e-05	0.0106	CTCCCACCTCGGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	54	68	-	11.4655	4.09e-05	0.0106	CTCCCACCTCGGCCC
SP2	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	76	90	-	11.4655	4.09e-05	0.0106	CTCCTGCCCCCCGAC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	+	12.0769	4.09e-05	0.0703	CGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	+	12.0769	4.09e-05	0.0703	CGCCGGGGGCG
GCM1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	56	66	+	11.7959	4.09e-05	0.531	CCTGCGGGCAG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	18	34	-	-3.40449	4.09e-05	0.962	TGGGTGCAAAGGTGACC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	18	34	-	-3.40449	4.09e-05	0.962	TGGGTGCAAAGGTGACC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	14	27	+	10.0862	4.09e-05	0.0292	GGCCGCGCCTCTCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	14	27	+	10.0862	4.09e-05	0.0292	GGCCGCGCCTCTCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	14	27	+	10.0862	4.09e-05	0.0292	GGCCGCGCCTCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	14	27	+	10.0862	4.09e-05	0.0292	GGCCGCGCCTCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	35	48	-	10.0862	4.09e-05	0.0292	CGCCCCGCCCCTGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	35	48	-	10.0862	4.09e-05	0.0292	CGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	35	48	-	10.0862	4.09e-05	0.0292	CGCCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	35	48	-	10.0862	4.09e-05	0.0292	CGCCCCGCCCCTGG
KLF14	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	58	71	-	10.0862	4.09e-05	0.0292	CTCCGCGCCCCCCT
SOX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	70	85	+	-9.90909	4.09e-05	1	TAAAAATAGCAGTGTG
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	22	35	+	4.78182	4.09e-05	0.162	GGCAAGGGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	22	35	+	4.78182	4.09e-05	0.162	GGCAAGGGGAAGTG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	+	12.0182	4.09e-05	0.055	CGCCGCGGGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	-	12.0182	4.09e-05	0.055	CGCCGCGGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	25	36	-	12.0182	4.09e-05	0.055	AGCCTCAGGGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	+	12.0182	4.09e-05	0.055	CGCCGCGGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	-	12.0182	4.09e-05	0.055	CGCCGCGGGGCG
ETV4	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	12.0172	4.09e-05	0.11	TCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	12.0172	4.09e-05	0.11	TCCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	12.0172	4.09e-05	0.11	TCCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	12.0172	4.09e-05	0.11	TCCGGAAGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	65	-	11.9818	4.09e-05	0.0893	TCCCCGCAGGCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	65	-	11.9818	4.09e-05	0.0893	TCCCCGCAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	65	-	11.9818	4.09e-05	0.0893	TCCCCGCAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	80	-	11.9818	4.09e-05	0.0893	TCCCCGCAGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	80	-	11.9818	4.09e-05	0.0893	TCCCCGCAGGCT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	35	52	+	-11.3553	4.09e-05	0.0389	GGAGGGAGAGATGGGAGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	63	80	-	-11.3553	4.09e-05	0.0389	GGAGGGAGAGATGGGAGG
E2F1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	43	54	-	11.8689	4.09e-05	0.41	TAGGGCGCCAGT
E2F1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	61	72	+	11.8689	4.09e-05	0.41	TAGGGCGCCAGT
TP63	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	15	32	-	0.448276	4.09e-05	0.724	ATCATGTGGGTACATGGC
Ddit3::Cebpa	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	103	114	+	12.0222	4.09e-05	1	GAATGCAATTGC
SREBF2	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	1	10	-	12.236	4.09e-05	0.871	ATGGGATGAT
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	96	105	+	12.236	4.09e-05	0.871	ATGGGATGAT
TCF3	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	-	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	-	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	-	12.8654	4.09e-05	0.404	GGCACCTGCG
TCF3	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	+	12.8654	4.09e-05	0.404	GGCACCTGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	+	11.2241	4.09e-05	0.0554	CGCCCCCACGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	+	11.2241	4.09e-05	0.0554	CGCCCCCACGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	+	11.2241	4.09e-05	0.0554	CGCCCCCACGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	+	11.2241	4.09e-05	0.0554	CGCCCCCACGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	-	11.2241	4.09e-05	0.0554	TCCCTGTGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	-	11.2241	4.09e-05	0.0554	TCCCTGTGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	-	11.2241	4.09e-05	0.0554	TCCCTGTGGGGCT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	-	11.2241	4.09e-05	0.0554	CGCCGCGAGGGCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	+	11.2241	4.09e-05	0.0554	CGCCGCGAGGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	-	11.2241	4.09e-05	0.0554	CGCCGCGAGGGCC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	+	11.2241	4.09e-05	0.0554	CGCCGCGAGGGCC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	26	37	+	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	26	37	+	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	57	68	+	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	58	-	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	58	-	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	89	-	11.3279	4.09e-05	0.118	TCCCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	93	104	-	11.3279	4.09e-05	0.118	TACGCGGAAGCC
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	93	104	-	11.3279	4.09e-05	0.118	TACGCGGAAGCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	62	81	-	5.33945	4.09e-05	0.0529	ACAAACACCAACCCCGGCCC
RREB1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	93	112	-	5.33945	4.09e-05	0.0529	ACAAACACCAACCCCGGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	3	22	+	5.33945	4.09e-05	0.0529	ACAAACACCAACCCCGGCCC
RREB1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	34	53	+	5.33945	4.09e-05	0.0529	ACAAACACCAACCCCGGCCC
GLIS2	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	74	87	-	9.4918	4.09e-05	0.185	CGCCCCCCGCCGGC
TGIF2	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	+	9.40367	4.09e-05	0.848	TGGCTGCTGTCA
SP1	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	24	34	+	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	30	40	+	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	21	31	-	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	35	45	+	11.9615	4.09e-05	0.0122	GGCCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	31	41	-	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	31	41	-	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	81	91	-	11.9615	4.09e-05	0.0122	TCTCCTCCCTC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	38	47	-	11.7241	4.09e-05	0.164	GACGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	38	47	-	11.7241	4.09e-05	0.164	GACGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	58	67	+	11.7241	4.09e-05	0.164	GACGCGTGCG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	58	67	+	11.7241	4.09e-05	0.164	GACGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	58	67	+	11.7241	4.09e-05	0.164	GACGCGTGCG
E2F8	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	1	12	+	6.57317	4.09e-05	0.631	TTTCCCGCACAC
NFIL3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	18	28	+	11.9798	4.09e-05	1	TGATGTAACCC
NFIL3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	51	61	-	11.9798	4.09e-05	1	TGATGTAACCC
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	73	91	+	11.4839	4.09e-05	0.671	TGCCTTCTGGTAACTTGTC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	18	30	-	4.12245	4.09e-05	0.233	TGGGGAACCCGCT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	49	61	-	4.12245	4.09e-05	0.233	AGGGGAAGCCCTC
NFKB1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	54	66	+	4.12245	4.09e-05	0.233	AGGGGAAGCCCTC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	42	51	+	11.551	4.09e-05	0.213	GTGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	42	51	+	11.551	4.09e-05	0.213	GTGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	58	67	-	11.551	4.09e-05	0.213	GTGACTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	58	67	-	11.551	4.09e-05	0.213	GTGACTTTCC
Hoxd9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	83	92	-	11.3472	4.09e-05	1	ACAATTAAAT
Hoxd9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	83	92	-	11.3472	4.09e-05	1	ACAATTAAAT
Hoxd9	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	23	32	+	11.3472	4.09e-05	1	ACAATTAAAT
IRF7	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	28	41	-	9.93548	4.09e-05	0.686	GTGAAAGCAAAAGT
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	40	53	-	9.93548	4.09e-05	0.686	GTGAAAGCAAAAGT
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	40	53	-	9.93548	4.09e-05	0.686	GTGAAAGCAAAAGT
YY1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	83	94	-	11.6731	4.09e-05	0.217	GAAAATGGCATC
YY1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	21	32	+	11.6731	4.09e-05	0.217	GAAAATGGCATC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	77	87	-	11.9016	4.1e-05	0.051	GCGGAAGCCAC
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	+	4.93443	4.1e-05	0.598	TGGCAGATGGCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	+	4.93443	4.1e-05	0.598	TGGCAGATGGCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	+	4.93443	4.1e-05	0.598	TGGCAGATGGCA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	+	4.93443	4.1e-05	0.598	TGGCAGATGGCA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	5	25	-	10.6122	4.1e-05	0.015	GAAGGGAGGGAAAGAAGAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	5	25	-	10.6122	4.1e-05	0.015	AGAGAAAGAACGGCGGGGAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	36	56	-	10.6122	4.1e-05	0.015	GGAGGGCAAGGAGGAGGAGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	36	56	-	10.6122	4.1e-05	0.015	GGAGGGCAAGGAGGAGGAGCG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	40	60	-	10.6122	4.1e-05	0.015	GGGAGAGGCCTGGGAAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	62	82	-	10.6122	4.1e-05	0.015	AGAGGAAATGGAGAGGGTGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	72	92	-	10.6122	4.1e-05	0.015	GAAGGGAGGGAAAGAAGAAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	82	102	-	10.6122	4.1e-05	0.015	AGATGAGCGGGGGTGGGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	13	33	+	10.6122	4.1e-05	0.015	AGATGAGCGGGGGTGGGGGTG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	15	35	+	10.6122	4.1e-05	0.015	AGAGAAAGAACGGCGGGGAAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	23	43	+	10.6122	4.1e-05	0.015	GAAGGGAGGGAAAGAAGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	52	72	+	10.6122	4.1e-05	0.015	AGAGGAAAGGCAACATGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	52	72	+	10.6122	4.1e-05	0.015	AGAGGAAAGGCAACATGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	52	72	+	10.6122	4.1e-05	0.015	AGAGGAAAGGCAACATGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	55	75	+	10.6122	4.1e-05	0.015	GGGAGAGGCCTGGGAAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	55	75	+	10.6122	4.1e-05	0.015	GGGAGAGGCCTGGGAAGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	71	91	+	10.6122	4.1e-05	0.015	AGAGGAAATGGAGAGGGTGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	89	109	+	10.6122	4.1e-05	0.015	TGAAGAGCGAGAGAAAAGAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	90	110	+	10.6122	4.1e-05	0.015	GAAGGGAGGGAAAGAAGAAGG
ELK3	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	12.0345	4.1e-05	0.109	TCCGGAAGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	-	11.5246	4.1e-05	0.0586	GGCCGCGCGGGCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	8	23	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	8	23	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	8	23	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	8	23	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	8	23	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	11	26	+	11.1818	4.1e-05	0.0374	CCTCGCCCCCGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	5	20	-	11.1818	4.1e-05	0.0374	CTCAGCCCACGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	5	20	-	11.1818	4.1e-05	0.0374	CTCAGCCCACGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	25	40	+	11.1818	4.1e-05	0.0374	GGCCGCCCACGGGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	25	40	+	11.1818	4.1e-05	0.0374	GGCCGCCCACGGGCCT
EGR4	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	18	33	-	11.1818	4.1e-05	0.0374	CCTCGCCCCCGCCCCG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	35	50	+	11.1818	4.1e-05	0.0374	CTCAGCCCACGCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	42	-	11.1818	4.1e-05	0.0374	GCCCGCCCTCGCGGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	42	-	11.1818	4.1e-05	0.0374	GCCCGCCCTCGCGGCC
EGR4	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	39	54	-	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	61	76	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	61	76	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	61	76	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	61	76	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	61	76	+	11.1818	4.1e-05	0.0374	TCCCGCCCACCTTTTC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	52	67	-	11.1818	4.1e-05	0.0374	CTCCGCCCCCTCGCCT
EGR4	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	82	97	+	11.1818	4.1e-05	0.0374	CCTCGCCCCCGCCCCG
EGR4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	89	104	-	11.1818	4.1e-05	0.0374	CCTCGCCCCCGCCCCG
SOX4	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	56	71	+	-9.92424	4.1e-05	1	AAGGAAGTTCAGGGTT
SOX4	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	44	59	-	-9.92424	4.1e-05	1	AAGGAAGTTCAGGGTT
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	103	114	-	11.7857	4.1e-05	0.217	TCCGACCCCCGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	103	114	-	11.7857	4.1e-05	0.217	TCCGACCCCCGC
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	+	11.9574	4.1e-05	0.191	TATGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	+	11.9574	4.1e-05	0.191	TATGAGTCAGC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	8	19	-	11.2857	4.1e-05	0.165	GGGAAGGGGGAA
INSM1	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	15	26	-	11.2857	4.1e-05	0.165	AGCCTGGGGCCG
INSM1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	37	48	+	11.2857	4.1e-05	0.165	GGGAAGGGGGAA
ELF3	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	17	29	-	9.67241	4.1e-05	0.134	GAAGCGGAAGTGC
ELF3	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	86	98	+	9.67241	4.1e-05	0.134	GAAGCGGAAGTGC
EGR3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	9	23	+	7.96552	4.1e-05	0.0364	CCACCCCCTCGCATC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	6	17	+	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	6	17	+	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	21	32	+	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	18	29	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	42	53	+	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	34	45	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	34	45	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	34	45	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	34	45	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	58	69	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	70	81	+	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	62	73	-	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	86	97	+	11.6579	4.1e-05	0.0272	CCCACCCCCGCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	83	94	-	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	83	94	-	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	83	94	-	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	83	94	-	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	83	94	-	11.6579	4.1e-05	0.0272	AACCCGCCCAGC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	51	-	11.9273	4.1e-05	0.13	GCCCGGAAGTC
ELF5	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	57	-	11.9273	4.1e-05	0.13	AACCGGAAGCC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	59	69	+	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	59	69	+	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	59	69	+	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	59	69	+	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	59	69	+	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF5	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	67	77	-	11.9273	4.1e-05	0.13	ACCCGGAAGGC
ELF1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	19	-	10.4364	4.1e-05	0.0999	GAGCAGGAAGTG
ELF1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	96	107	+	10.4364	4.1e-05	0.0999	GAGCAGGAAGTG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	63	73	-	12.1455	4.1e-05	0.0548	AAACTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	63	73	-	12.1455	4.1e-05	0.0548	AAACTTCCGGT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	51	65	+	10.7273	4.1e-05	0.298	GCCGTTTCTCTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	51	65	+	10.7273	4.1e-05	0.298	GCCGTTTCTCTTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	51	65	+	10.7273	4.1e-05	0.298	GCCGTTTCTCTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	51	65	+	10.7273	4.1e-05	0.298	GCCGTTTCTCTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	57	71	+	10.7273	4.1e-05	0.298	TCTCTTTCTTTTCCG
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	57	71	+	10.7273	4.1e-05	0.298	TCTCTTTCTTTTCCG
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	57	71	+	10.7273	4.1e-05	0.298	TCTCTTTCTTTTCCG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	57	71	+	10.7273	4.1e-05	0.298	TCTCTTTCTTTTCCG
RXRB	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	62	75	-	2.65455	4.1e-05	0.473	AGGTTGAAATTTCA
SP4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	55	71	-	5.61818	4.1e-05	0.0236	GCCACCACGCCCCGCCT
Npas2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	-	12.5738	4.1e-05	0.333	ACCACGTGGA
Npas2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	+	12.5738	4.1e-05	0.333	ACCACGTGGA
Npas2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	-	12.5738	4.1e-05	0.333	ACCACGTGGA
ZIC3	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	12	26	+	9.4	4.1e-05	0.105	AGCCCCCTCCTGTTC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	50	64	+	9.4	4.1e-05	0.105	TACGACCCGCCGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	50	64	+	9.4	4.1e-05	0.105	TACGACCCGCCGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	50	64	+	9.4	4.1e-05	0.105	TACGACCCGCCGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	50	64	+	9.4	4.1e-05	0.105	TACGACCCGCCGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	61	75	+	9.4	4.1e-05	0.105	CCCTCCCCTCTGCGC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	89	103	-	9.4	4.1e-05	0.105	AGCCCCCTCCTGTTC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	23	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
Myog	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	59	+	12.7347	4.1e-05	0.137	AACAGGTGGGG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	-	12.0577	4.1e-05	0.0703	CGCCGCCGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	-	12.0577	4.1e-05	0.0703	CGCCGCCGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	-	12.0577	4.1e-05	0.0703	CGCCGCCGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	-	12.0577	4.1e-05	0.0703	CGCCGCCGGCA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	-	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	-	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	+	12.0577	4.1e-05	0.0703	AGCCGGGGGCG
PAX5	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	89	107	+	11.4194	4.1e-05	0.147	CAAGGCGGCGGACCAGGCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	14	31	-	-11.3684	4.1e-05	0.039	AGGAGGAGGGATGGGAGG
BHLHE40	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	13.0577	4.1e-05	0.273	GACACGTGAC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	13.0577	4.1e-05	0.273	GACACGTGAC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	13.0577	4.1e-05	0.273	GACACGTGAC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	13.0577	4.1e-05	0.273	GACACGTGAC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	13.0577	4.1e-05	0.273	GACACGTGAC
BHLHE40	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	13.0577	4.1e-05	0.273	GACACGTGAC
BCL6B	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	90	106	+	-13.7143	4.11e-05	0.94	TGCTCTGCAGGAATAAC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	8	18	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	8	18	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	8	18	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	29	39	-	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	29	39	-	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	55	65	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	55	65	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	55	65	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	55	65	+	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	50	60	-	12.3276	4.11e-05	0.0534	GGGAGGGAGTG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	74	-	10.5143	4.11e-05	0.115	GCGTGGCAGGGGGCG
GSC	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	4	13	-	11.6981	4.11e-05	1	ACTAATCCCA
RFX4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	+	10.9394	4.11e-05	0.235	CGGTATCCTGGCAACG
RFX4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	-	10.9394	4.11e-05	0.235	CGGTATCCTGGCAACG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	87	97	-	12.7347	4.11e-05	0.158	GGCAGCTGGCT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	87	97	-	12.7347	4.11e-05	0.158	GGCAGCTGGCT
DUX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	3	13	+	11.9787	4.11e-05	1	AAAGCCAATCA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	17	30	+	11.3077	4.11e-05	0.0186	TCCCCACCGACGGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	33	46	+	11.3077	4.11e-05	0.0186	GCCCAGCCTCCGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	10.3287	4.11e-05	0.0848	GCCACGTGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	10.3287	4.11e-05	0.0848	GCCACGTGCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	12	22	+	11.5172	4.11e-05	0.0163	GTCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	12	22	+	11.5172	4.11e-05	0.0163	GTCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	49	59	-	11.5172	4.11e-05	0.0163	GTCACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	49	59	-	11.5172	4.11e-05	0.0163	GTCACACCCAC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	31	-	11.3607	4.11e-05	0.0641	ACCCCTCCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	31	-	11.3607	4.11e-05	0.0641	ACCCCTCCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	31	-	11.3607	4.11e-05	0.0641	ACCCCTCCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	31	-	11.3607	4.11e-05	0.0641	ACCCCTCCAGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	-	11.3607	4.11e-05	0.0641	ACCCCGGGAGGCG
TFAP4	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	36	45	+	12.0727	4.11e-05	0.655	GCCAGCTGAT
TFAP4	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	54	63	+	12.0727	4.11e-05	0.655	GCCAGCTGAT
CTCF	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	5	23	+	9.83607	4.11e-05	0.113	ATTCCGGCTGGTGGCGGCC
CTCF	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	50	68	-	9.83607	4.11e-05	0.113	CTGCCACCTGGCGGCGAAG
CTCF	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	92	110	-	9.83607	4.11e-05	0.113	ATTCCGGCTGGTGGCGGCC
RFX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	-	8.01724	4.11e-05	0.238	CATTGGTATGACAACA
RFX5	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	+	8.01724	4.11e-05	0.238	CGTTGCCAGGATACCG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	-	8.01724	4.11e-05	0.238	CGTTGCCAGGATACCG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	52	65	+	11.8636	4.11e-05	0.0496	TGGGACTGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	52	65	+	11.8636	4.11e-05	0.0496	TGGGACTGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	52	65	+	11.8636	4.11e-05	0.0496	TGGGACTGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	52	65	+	11.8636	4.11e-05	0.0496	TGGGACTGGGCCTG
JUN	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	69	81	+	11.6735	4.11e-05	0.301	GCAATGAGGTCAG
JUN	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	69	81	+	11.6735	4.11e-05	0.301	GCAATGAGGTCAG
JUN	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	34	46	-	11.6735	4.11e-05	0.301	GCAATGAGGTCAG
ETV5	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	11.7273	4.11e-05	0.0984	TCCGGAAGCA
NFE2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	72	82	-	7.36735	4.11e-05	0.253	AATGACTCGTC
NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	72	82	-	7.36735	4.11e-05	0.253	AATGACTCGTC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	7	21	-	11.2909	4.12e-05	0.109	CGCCCCCCACAGGCC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	70	84	+	11.2909	4.12e-05	0.109	CGCCCCCCACAGGCC
LBX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	10.7119	4.12e-05	1	GCCAATTACC
LBX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	10.7119	4.12e-05	1	GCCAATTACC
KLF14	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	14	27	+	10.069	4.12e-05	0.0292	AGGCCCGCCCACGT
KLF14	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	25	38	-	10.069	4.12e-05	0.0292	TGCCCCACCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	31	44	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	31	44	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	35	48	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	35	48	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	35	48	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	35	48	-	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	71	84	+	10.069	4.12e-05	0.0292	GGCCGCGCCCCGCC
KLF14	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	77	90	+	10.069	4.12e-05	0.0292	TGCCCCACCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	88	101	-	10.069	4.12e-05	0.0292	AGGCCCGCCCACGT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	88	101	-	10.069	4.12e-05	0.0292	AGGCCCGCCCACGT
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	96	105	-	12.2295	4.12e-05	0.216	ACTCACGTGT
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	96	105	-	12.2295	4.12e-05	0.216	ACTCACGTGT
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	96	105	-	12.2295	4.12e-05	0.216	ACTCACGTGT
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	96	105	-	12.2295	4.12e-05	0.216	ACTCACGTGT
Arntl	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	10	19	+	12.2295	4.12e-05	0.216	ACTCACGTGT
MAFG	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	9	29	+	10.7551	4.12e-05	0.929	CGGGTGCCGAGTCAGGAACAT
MAFG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	86	106	-	10.7551	4.12e-05	0.929	CGGGTGCCGAGTCAGGAACAT
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	86	106	-	10.7551	4.12e-05	0.929	CGGGTGCCGAGTCAGGAACAT
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	86	106	-	10.7551	4.12e-05	0.929	CGGGTGCCGAGTCAGGAACAT
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	7	18	-	10.4182	4.12e-05	0.0999	GACCCGGAAGAT
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	7	18	-	10.4182	4.12e-05	0.0999	GACCCGGAAGAT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	41	-	10.4182	4.12e-05	0.0999	ACTCCGGAAATA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	41	-	10.4182	4.12e-05	0.0999	ACTCCGGAAATA
ELF1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	55	-	10.4182	4.12e-05	0.0999	ACTCCGGAAATA
ELF1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	60	71	+	10.4182	4.12e-05	0.0999	ACTCCGGAAATA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	6	15	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	6	15	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	6	15	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	6	15	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	6	15	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	9	18	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	10	19	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	13	22	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	6	15	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	6	15	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	6	15	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	6	15	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	6	15	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	9	18	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	18	27	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	18	27	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	10	19	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	13	22	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	24	33	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	18	27	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	18	27	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	27	36	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	32	41	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	32	41	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	24	33	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	34	43	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	34	43	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	36	45	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	27	36	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	36	45	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	37	46	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	38	47	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	32	41	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	32	41	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	34	43	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	34	43	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	36	45	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	36	45	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	37	46	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	38	47	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	48	57	+	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	49	58	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	49	58	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	48	57	-	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	57	66	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	57	66	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	58	67	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	58	67	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	49	58	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	49	58	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	57	66	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	57	66	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	58	67	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	58	67	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	68	77	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	69	78	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	68	77	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	69	78	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	79	88	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	83	92	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	83	92	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	83	92	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	83	92	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	86	95	+	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	79	88	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	88	97	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	89	98	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	89	98	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	83	92	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	83	92	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	83	92	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	83	92	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	93	102	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	86	95	-	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	97	106	+	10.0645	4.12e-05	0.0452	CGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	88	97	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	89	98	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	89	98	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	93	102	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	105	114	+	10.0645	4.12e-05	0.0452	GGCGCGCGGG
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	97	106	-	10.0645	4.12e-05	0.0452	GCCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	105	114	-	10.0645	4.12e-05	0.0452	CCCGCGCGCC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	24	33	-	12.6212	4.12e-05	0.229	TACACGTGAT
ELF4	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	90	101	+	10.3607	4.12e-05	0.0972	CTCCCGGAAGCT
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	25	-	10.3607	4.12e-05	0.0972	CTCCCGGAAGCT
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	25	-	10.3607	4.12e-05	0.0972	CTCCCGGAAGCT
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	20	33	+	7.82979	4.12e-05	0.0984	GGCCACACACTGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	20	33	+	7.82979	4.12e-05	0.0984	GGCCACACACTGCG
E2F4	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	13	23	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	26	36	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	26	36	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	28	38	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	28	38	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	38	48	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	59	69	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	59	69	-	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	15	25	+	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	37	47	+	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	37	47	+	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	79	89	+	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
E2F4	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	92	102	+	12.0862	4.12e-05	0.0458	GGGCGGGGGAG
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	+	12.2424	4.12e-05	0.585	TCCACGTGTT
CLOCK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	+	12.2424	4.12e-05	0.585	TCCACGTGTT
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	-	12.2424	4.12e-05	0.585	TCCACGTGTT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	13	23	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	24	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	38	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	38	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	30	40	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	40	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	60	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	60	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	57	67	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	57	67	+	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	48	58	-	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	71	-	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	71	-	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	75	85	-	11.5	4.12e-05	0.0163	CCCCCGCCCTC
KLF16	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	77	87	-	11.5	4.12e-05	0.0163	CCCCCGCCCTC
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	12	29	+	-11.3816	4.12e-05	0.039	GGGGGGCGTGAAGGAGGA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	21	38	+	-11.3816	4.12e-05	0.039	GGCGGGAAGAAAGCTGGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	77	94	-	-11.3816	4.12e-05	0.039	GGCGGGAAGAAAGCTGGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	86	103	-	-11.3816	4.12e-05	0.039	GGGGGGCGTGAAGGAGGA
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	46	60	+	11.6806	4.12e-05	0.515	TTATAAAAAGCTGCG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	68	81	-	9.47541	4.12e-05	0.185	GCCCCCCAGCCTTG
Myc	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	5	14	+	12.6364	4.12e-05	0.365	CCATGTGTCC
Myc	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	29	38	+	12.6364	4.12e-05	0.365	CCATGTGTCC
Myc	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	101	110	-	12.6364	4.12e-05	0.365	CCATGTGTCC
Sox3	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	33	42	-	12.5	4.12e-05	0.659	GCTTTGTCCC
Sox3	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	44	53	+	12.5	4.12e-05	0.659	GCTTTGTCCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	62	71	-	12.5	4.12e-05	0.659	GCTTTGTCCC
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	62	71	-	12.5	4.12e-05	0.659	GCTTTGTCCC
Sox3	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	73	82	+	12.5	4.12e-05	0.659	GCTTTGTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	20	34	+	11.4483	4.12e-05	0.0107	CCCCCACCCCAAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	20	34	+	11.4483	4.12e-05	0.0107	CCCCCACCCCAAGCC
SP2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	36	50	+	11.4483	4.12e-05	0.0107	AGACCGCCCCCGGCC
SP2	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	43	57	+	11.4483	4.12e-05	0.0107	TCCCCTCCTCTGGAC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	9	23	-	11.4483	4.12e-05	0.0107	CCCCCACCCCAAGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	43	57	-	11.4483	4.12e-05	0.0107	TCCCCTCCCCGGCAC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	58	72	-	11.4483	4.12e-05	0.0107	TCCCCTCCTCTGGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	58	72	-	11.4483	4.12e-05	0.0107	TCCCCTCCTCTGGAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	65	79	-	11.4483	4.12e-05	0.0107	ACCCCACCCCTGTGG
SP2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	65	79	-	11.4483	4.12e-05	0.0107	AGACCGCCCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	65	79	-	11.4483	4.12e-05	0.0107	ACCCCACCCCTGTGG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	60	74	-	7.94828	4.12e-05	0.0364	CCCCGCCCCCTCCGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	60	74	-	7.94828	4.12e-05	0.0364	CCCCGCCCCCTCCGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	81	-	11.7049	4.12e-05	0.359	GCGGCTCACACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	81	-	11.7049	4.12e-05	0.359	GCGGCTCACACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	81	-	11.7049	4.12e-05	0.359	GCGGCTCACACCT
FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	11.9362	4.12e-05	0.103	TCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	11.9362	4.12e-05	0.103	TCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	11.9362	4.12e-05	0.103	TCCGGAAGTT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	65	78	-	12.2115	4.12e-05	0.212	AGCCTGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	65	78	-	12.2115	4.12e-05	0.212	AGCCTGTGACTCAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	10	26	+	5.6	4.12e-05	0.0237	GGCGCCCCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	10	26	+	5.6	4.12e-05	0.0237	GGCGCCCCGCCCCGCCC
SP4	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	10	26	+	5.6	4.12e-05	0.0237	GCGGCCCCGCCCGCGAG
SP4	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	18	34	-	5.6	4.12e-05	0.0237	GGCGCCCCGCCCCGCCC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	82	92	-	11.7755	4.12e-05	0.531	GCTGCGGGTCC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	82	92	-	11.7755	4.12e-05	0.531	GCTGCGGGTCC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	82	92	-	11.7755	4.12e-05	0.531	GCTGCGGGTCC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	82	92	-	11.7755	4.12e-05	0.531	GCTGCGGGTCC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.0	82	92	-	11.7755	4.12e-05	0.531	GCTGCGGGTCC
CREB3	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	28	41	-	10.8429	4.12e-05	0.241	TGGTGACGTCATCA
INSM1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	7	18	+	11.2755	4.13e-05	0.165	ATGCAGGGGGCG
INSM1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	97	108	-	11.2755	4.13e-05	0.165	ATGCAGGGGGCG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	21	+	5.31193	4.13e-05	0.0533	TCCCCCCCCCCCCCCCACAG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	75	-	11.4545	4.13e-05	0.225	TCCCGGAAGCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	96	107	-	11.6447	4.13e-05	0.0274	GCCACCGCCACC
NFYA	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	47	64	+	10.3537	4.13e-05	0.133	GGGCCTTTGATTGGCAGC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	+	11.5082	4.13e-05	0.0586	GCCCCGGGGGGGT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	54	68	-	9.38571	4.13e-05	0.105	TCCTCCCCGCTGCAA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	88	102	-	9.38571	4.13e-05	0.105	GGCGTCCTGCTGTGG
EGR2	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	3	13	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	19	29	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	19	29	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	19	29	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	19	29	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	27	37	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	28	38	-	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	28	38	-	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	40	50	-	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	65	75	+	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	86	96	-	10.6034	4.13e-05	0.0799	CCGGCCACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	102	112	-	10.6034	4.13e-05	0.0799	ACGCCCAGGCA
KLF5	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	20	29	-	12.2245	4.13e-05	0.0182	GTCCCTCCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	42	51	-	12.2245	4.13e-05	0.0182	GTCCCTCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	82	91	-	12.2245	4.13e-05	0.0182	GTCCCTCCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	24	33	+	12.2245	4.13e-05	0.0182	GTCCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	26	35	+	12.2245	4.13e-05	0.0182	GTCCCTCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	64	73	+	12.2245	4.13e-05	0.0182	GTCCCTCCCA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	30	40	+	12.2653	4.13e-05	0.301	TTTTCTTAGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	101	111	+	12.2653	4.13e-05	0.301	TTTTCTTAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	4	14	-	12.2653	4.13e-05	0.301	TTTTCTTAGAA
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	75	85	-	12.2653	4.13e-05	0.301	TTTTCTTAGAA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	62	-	12.1818	4.13e-05	0.0515	CCCCCCCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	62	-	12.1818	4.13e-05	0.0515	CCCCCCCGGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	-	11.2069	4.13e-05	0.0554	GGCCCTCGAGGGG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	-	11.2069	4.13e-05	0.0554	CGCCCGGCAGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	+	11.2069	4.13e-05	0.0554	CGCCCGGCAGGCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	11	25	-	10.8333	4.13e-05	0.272	CAGAGTGAGCCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	11	25	-	10.8333	4.13e-05	0.272	CAGAGTGAGCCAGCT
SPIC	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	13	26	+	11.6761	4.13e-05	0.216	GAAAAGGGGAGGTG
SPIC	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	89	102	-	11.6761	4.13e-05	0.216	GAAAAGGGGAGGTG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	21	37	-	10.8367	4.13e-05	0.338	GGGTCAGGGTGGGGCCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	21	37	-	10.8367	4.13e-05	0.338	GGGTCAGGGTGGGGCCT
HLF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	+	12.2373	4.13e-05	1	GGTGACGTAACC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	+	12.2373	4.13e-05	1	GGTGACGTAACC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	+	12.2373	4.13e-05	1	GGTGACGTAACC
HLF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	+	12.2373	4.13e-05	1	GGTGACGTAACC
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	57	69	-	4.08163	4.13e-05	0.233	GGGGACTTCCCCA
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	77	89	-	4.08163	4.13e-05	0.233	GGGGACTTCCCCA
NFKB1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	26	38	+	4.08163	4.13e-05	0.233	GGGGACTTCCCCA
NFKB1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	46	58	+	4.08163	4.13e-05	0.233	GGGGACTTCCCCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	76	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	76	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	107	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	107	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	107	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	107	-	11.8448	4.13e-05	0.123	TGCAGCTGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	+	11.3443	4.13e-05	0.0641	GGCCCCGGCGGCT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	30	44	-	9.62295	4.13e-05	0.0538	GCCCCCGCCCAACCT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	70	84	+	9.62295	4.13e-05	0.0538	GCCCCCGCCCAACCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	27	47	+	10.1613	4.13e-05	0.165	CATGACTTCCTCTTCCATTCT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	27	47	+	10.1613	4.13e-05	0.165	CATGACTTCCTCTTCCATTCT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	62	82	+	10.1613	4.13e-05	0.165	TTCTGCTTTTGCTTCTTCCTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	59	79	-	10.1613	4.13e-05	0.165	TCTCTCTTTCTCTCTCGCTCA
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	87	107	-	10.1613	4.13e-05	0.165	TCTCTCTTTCTCTCTCGCTCA
EBF1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	22	35	-	10.3607	4.14e-05	0.365	ACACCCTAGAGAAT
EBF1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	80	93	+	10.3607	4.14e-05	0.365	ACACCCTAGAGAAT
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	27	42	+	11.6463	4.14e-05	1	TGAGATGCAAATGTCA
Rarb(var.2)	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	24	40	-	-0.318182	4.14e-05	0.785	CGTCCAGACCAAGGTCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	75	91	+	-0.318182	4.14e-05	0.785	CGTCCAGACCAAGGTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	75	91	+	-0.318182	4.14e-05	0.785	CGTCCAGACCAAGGTCA
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	75	91	+	-0.318182	4.14e-05	0.785	CGTCCAGACCAAGGTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	75	91	+	-0.318182	4.14e-05	0.785	CGTCCAGACCAAGGTCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	8	25	+	-11.3947	4.14e-05	0.039	ATAAGGAAGGGAAGAATG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	20	37	+	-11.3947	4.14e-05	0.039	ATAAGGAAGGGAAGAATG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	38	55	+	-11.3947	4.14e-05	0.039	ATAAGGAAGGGAAGAATG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	60	77	-	-11.3947	4.14e-05	0.039	ATAAGGAAGGGAAGAATG
Gabpa	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	33	43	-	11.8852	4.14e-05	0.0511	GCGGAAGTCCT
Gabpa	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	56	66	+	11.8852	4.14e-05	0.0511	GCGGAAGTCCT
Gabpa	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	49	59	-	11.8852	4.14e-05	0.0511	GCGGAAGTCCT
Gabpa	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	72	82	+	11.8852	4.14e-05	0.0511	GCGGAAGTCCT
Crx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	49	59	+	12.2069	4.14e-05	1	GGAGGGATTAG
Crx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	49	59	+	12.2069	4.14e-05	1	GGAGGGATTAG
ELF1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	24	35	+	10.4	4.14e-05	0.0999	TGGCCGGAAGTC
ELF1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	35	46	+	10.4	4.14e-05	0.0999	TGGCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	59	70	+	10.4	4.14e-05	0.0999	TAGCAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	59	70	+	10.4	4.14e-05	0.0999	TAGCAGGAAGTG
ELF1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	80	-	10.4	4.14e-05	0.0999	TGGCCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	91	-	10.4	4.14e-05	0.0999	TGGCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	91	-	10.4	4.14e-05	0.0999	TGGCCGGAAGTC
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	10	30	+	6.45918	4.14e-05	0.208	TCCCGTACGGTGGACGGCGAC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	10	30	+	6.45918	4.14e-05	0.208	TCCCGTACGGTGGACGGCGAC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	10	30	+	6.45918	4.14e-05	0.208	TCCCGTACGGTGGACGGCGAC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	78	97	-	5.30275	4.14e-05	0.0534	CCAAACAACAAACCAACTGA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	17	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	17	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	17	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	17	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	17	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	39	+	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	39	+	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	59	+	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	61	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	61	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	70	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	70	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	70	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	70	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	70	+	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	74	+	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	83	+	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	41	51	-	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	45	55	-	11.7886	4.14e-05	0.018	CTCCCGCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	53	63	-	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	78	88	-	11.7886	4.14e-05	0.018	GCCCCGCCTCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	78	88	-	11.7886	4.14e-05	0.018	GCCCCGCCTCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	16	27	+	12	4.14e-05	0.055	CACCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	+	12	4.14e-05	0.055	CGGCCCCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	+	12	4.14e-05	0.055	CGGCCCCGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	-	12	4.14e-05	0.055	CGGCCCCGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	+	12	4.14e-05	0.055	CGGCCCCGGGCG
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	27	36	-	12.2692	4.14e-05	0.439	CAACCACAAT
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	27	36	-	12.2692	4.14e-05	0.439	CAACCACAAT
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	27	36	-	12.2692	4.14e-05	0.439	CAACCACAAT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	80	89	-	12.2692	4.14e-05	0.439	AAACCACACA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	23	43	-	10.5918	4.14e-05	0.0151	AGAGGAAAAGGGGAGGGGCGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	23	43	-	10.5918	4.14e-05	0.0151	AGAGGAAAAGGGGAGGGGCGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	34	54	-	10.5918	4.14e-05	0.0151	AGTGGTGCTGGTGGAGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	36	56	-	10.5918	4.14e-05	0.0151	GGGGGAGGAGACGCATGGGCC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	67	87	-	10.5918	4.14e-05	0.0151	TGGAGAGTGAGGGAGGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	67	87	-	10.5918	4.14e-05	0.0151	TGGAGAGTGAGGGAGGAAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	59	79	+	10.5918	4.14e-05	0.0151	GGGGGAGGAGACGCATGGGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	32	47	+	11.1636	4.14e-05	0.0374	GCACGCGCACGCCTGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	32	47	+	11.1636	4.14e-05	0.0374	GCACGCGCACGCCTGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	32	47	+	11.1636	4.14e-05	0.0374	GCACGCGCACGCCTGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	32	47	+	11.1636	4.14e-05	0.0374	GCACGCGCACGCCTGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	56	71	+	11.1636	4.14e-05	0.0374	CCCCCCCCCCGCGCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	64	79	+	11.1636	4.14e-05	0.0374	GCGCGCCCTCGCAGTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	64	79	+	11.1636	4.14e-05	0.0374	GCGCGCCCTCGCAGTC
EGR4	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	68	83	-	11.1636	4.14e-05	0.0374	GCACGCGCACGCCTGC
MEIS3	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	43	50	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	50	57	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	61	68	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	61	68	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	61	68	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	74	81	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	74	81	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	84	91	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	102	109	-	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	102	109	-	11.7308	4.14e-05	0.838	GTGACAGG
RHOXF1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	36	43	-	10.2308	4.14e-05	1	TTGATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	86	93	-	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	86	93	-	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.2.0	92	99	-	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.0	92	99	-	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.1	92	99	-	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.0.0	92	99	-	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.1.0	92	99	-	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	98	105	-	10.2308	4.14e-05	1	CTGATCCC
CREB1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	12	19	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	21	28	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	21	28	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	21	28	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	21	28	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	17	24	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	17	24	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	25	32	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	34	41	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	34	41	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	34	41	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	41	48	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	41	48	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	58	65	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	63	70	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	63	70	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	67	74	+	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	67	74	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	67	74	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	67	74	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	67	74	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	67	74	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	73	80	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	80	87	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	80	87	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	80	87	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	80	87	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	83	90	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	104	111	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	104	111	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	104	111	-	11.5676	4.14e-05	0.136	TGACGTCT
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	104	111	-	11.5676	4.14e-05	0.136	TGACGTCT
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	32	39	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	33	40	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	33	40	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	38	45	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	58	65	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	58	65	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	60	67	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	64	71	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	64	71	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	64	71	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	64	71	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	64	71	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	100	107	+	11.7308	4.14e-05	0.838	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	100	107	+	11.7308	4.14e-05	0.838	GTGACAGG
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	14	21	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr2:87769389..87769503,+__452.1.0.0	26	33	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	43	50	+	10.2308	4.14e-05	1	CTGATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	62	69	+	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	62	69	+	10.2308	4.14e-05	1	ATGATCCC
RHOXF1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	92	99	+	10.2308	4.14e-05	1	TTGATCCC
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	76	+	12.6939	4.14e-05	0.149	GCCAGCTGCTGTA
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	76	+	12.6939	4.14e-05	0.149	GCCAGCTGCTGTA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	47	65	-	9.81967	4.14e-05	0.113	CCGCCGCGCGGGGGAGCTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	47	65	-	9.81967	4.14e-05	0.113	CCGCCGCGCGGGGGAGCTG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	39	+	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	39	+	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	59	+	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	74	+	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	83	+	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	41	51	-	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	53	63	-	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	78	88	-	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	78	88	-	11.4828	4.14e-05	0.0163	GCCCCGCCTCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	66	79	-	7.09184	4.14e-05	0.0714	GAAGCTCTGGGGGG
TFCP2	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	44	53	+	11.9848	4.14e-05	1	AAACCAGATT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	34	47	+	10.0517	4.14e-05	0.0292	AAGCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	60	73	+	10.0517	4.14e-05	0.0292	AGCCCCACCCACCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	60	73	+	10.0517	4.14e-05	0.0292	AGCCCCACCCACCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	72	85	-	10.0517	4.14e-05	0.0292	AGCCCCACCCACCC
HES7	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	98	109	+	5.05172	4.14e-05	0.189	TCCCACGTGTCA
SP1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	11	21	+	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	4	14	-	11.9423	4.14e-05	0.0122	CCCCCACCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	7	17	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	7	17	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	19	29	+	11.9423	4.14e-05	0.0122	CCCCCACCCTT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	25	35	+	11.9423	4.14e-05	0.0122	ACCCCACCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	25	35	+	11.9423	4.14e-05	0.0122	ACCCCACCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	39	49	+	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	31	41	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	31	41	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	66	76	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	66	76	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	67	77	-	11.9423	4.14e-05	0.0122	CCCCCACCCTT
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	101	111	+	11.9423	4.14e-05	0.0122	CCCCCACCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	104	114	+	11.9423	4.14e-05	0.0122	CCCCCACCCTT
SP1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	94	104	-	11.9423	4.14e-05	0.0122	AGCCCGCCCCT
Foxo1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	55	65	+	12.3276	4.14e-05	0.895	GTTTGTTTACA
RARA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	12	29	-	-7.0303	4.14e-05	1	GAGGCCAAGCGGGCAGGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	-	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	-	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	+	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	-	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	-	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	-	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	+	12.0182	4.14e-05	0.174	GCTGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	+	12.0182	4.14e-05	0.174	GCTGAGTCACC
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	24	35	+	11.9636	4.14e-05	0.0893	GGCCCCAGGGGA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	38	-	11.9636	4.14e-05	0.0893	AGGCCGAGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	90	-	11.9636	4.14e-05	0.0893	AGGCCGAGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	90	-	11.9636	4.14e-05	0.0893	AGGCCGAGGGCA
PAX9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	42	58	-	2.63636	4.15e-05	0.463	CGGCACGCACCACAGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	28	42	-	7.93103	4.15e-05	0.0364	GCCCGCCCTCGCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	28	42	-	7.93103	4.15e-05	0.0364	GCCCGCCCTCGCGGC
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	16	27	-	8.5102	4.15e-05	0.149	GCTGATGTCATG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	88	99	+	8.5102	4.15e-05	0.149	GCTGATGTCATG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	88	99	+	8.5102	4.15e-05	0.149	GCTGATGTCATG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	5	16	-	11.6515	4.15e-05	0.109	CTGGGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.1.0	40	51	+	11.6515	4.15e-05	0.109	CAGCGTGCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	40	51	+	11.6515	4.15e-05	0.109	CAGCGTGCGCTC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.9483	4.15e-05	0.109	GCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.9483	4.15e-05	0.109	GCCGGAAGCC
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	23	35	+	12.1837	4.15e-05	0.383	CACAGGTCATCAG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	26	38	-	12.1837	4.15e-05	0.383	CACAGGTCATCAG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	44	56	+	12.1837	4.15e-05	0.383	GCGGGGTCACGTG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	37	49	-	12.1837	4.15e-05	0.383	GCGGGGTCACGTG
NRL	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	99	109	-	11.2692	4.15e-05	0.823	AGCTTGCTGAC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	+	11.898	4.15e-05	0.0857	CGCCCGCAGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	+	11.898	4.15e-05	0.0857	CGCCCGCAGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	+	11.898	4.15e-05	0.0857	CGCCCGCAGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	+	11.898	4.15e-05	0.0857	CGCCCGCAGGCC
ELK1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.4043	4.15e-05	0.0838	ACCGGAAGGT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.4043	4.15e-05	0.0838	CCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.4043	4.15e-05	0.0838	CCCGGAAGCG
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	23	37	-	11.3273	4.15e-05	0.312	AGAAGGGGAGAGCGG
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	23	37	-	11.3273	4.15e-05	0.312	AGAAGGGGAGAGCGG
GATA1::TAL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	7	24	+	11.8	4.15e-05	0.915	GCTATCTTGCTGACGCAC
GATA1::TAL1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	7	24	+	11.8	4.15e-05	0.915	GCTATCTTGCTGACGCAC
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	7	24	+	11.8	4.15e-05	0.915	GCTATCTTGCTGACGCAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	7	24	+	11.8	4.15e-05	0.915	GCTATCTTGCTGACGCAC
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	20	28	-	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	20	28	-	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	20	28	-	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	47	55	-	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	60	68	+	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	60	68	+	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	60	68	+	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	60	68	+	12.3091	4.15e-05	1	GGCACTTAA
Nkx3-1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	87	95	+	12.3091	4.15e-05	1	GGCACTTAA
Sox17	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	41	49	-	12	4.15e-05	1	CTCATTGTG
Sox17	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	66	74	+	12	4.15e-05	1	CTCATTGTG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	41	53	-	9.68182	4.15e-05	0.258	GAGGGGTTCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	5	15	+	11.7805	4.15e-05	0.018	CCCCCACCTCC
SP3	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	32	42	-	11.7805	4.15e-05	0.018	CCCCCACCTCC
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	18	32	+	12.0172	4.15e-05	0.669	GATTTCATCAGAACA
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	83	97	-	12.0172	4.15e-05	0.669	GATTTCATCAGAACA
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	3	15	+	11.7759	4.15e-05	1	CTGATTTTCATTT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	16	29	-	7.80851	4.15e-05	0.0984	TGCCCCACGCGGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	16	29	-	7.80851	4.15e-05	0.0984	TGCCCCACGCGGCT
ZIC1	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	86	99	+	7.80851	4.15e-05	0.0984	TGCCCCACGCGGCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	56	73	+	-11.4079	4.15e-05	0.0391	GGGTGGAGGGAAGTGAGG
TCF4	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	57	66	-	12.8776	4.15e-05	0.422	AACACCTGCA
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	104	113	+	12.8776	4.15e-05	0.422	AACACCTGCA
TCF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	104	113	+	12.8776	4.15e-05	0.422	AACACCTGCA
FEV	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	12.1538	4.15e-05	0.114	TCCGGAAATA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	12.1538	4.15e-05	0.114	TCCGGAAATA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	12.1538	4.15e-05	0.114	TCCGGAAATA
FEV	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	12.1538	4.15e-05	0.114	TCCGGAAATA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	56	-	9.77273	4.16e-05	0.326	TGGGTCGGAGGTTA
Nr2f6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	56	-	9.77273	4.16e-05	0.326	TGGGTCGGAGGTTA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	56	-	9.77273	4.16e-05	0.326	TGGGTCGGAGGTTA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	56	-	9.77273	4.16e-05	0.326	TGGGTCGGAGGTTA
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	31	44	+	9.77273	4.16e-05	0.326	GATGTCACAGGCCA
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	100	110	+	11.7551	4.16e-05	0.531	GCTGCGGGTGG
Hes2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	34	46	+	11.2698	4.16e-05	0.475	GTAGGACACATGC
Hes2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	67	-	11.2698	4.16e-05	0.475	AACGCGCACGTGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	67	-	11.2698	4.16e-05	0.475	AACGCGCACGTGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	55	67	-	11.2698	4.16e-05	0.475	AAGGCGCACGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	55	67	-	11.2698	4.16e-05	0.475	AAGGCGCACGTGC
Hes2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	57	69	-	11.2698	4.16e-05	0.475	GTAGGACACATGC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	16	30	+	11.431	4.16e-05	0.0107	GGACCGCCCACCCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	23	37	+	11.431	4.16e-05	0.0107	CCCCCACCTCTGTCT
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	23	37	+	11.431	4.16e-05	0.0107	ACTCCACCCTCCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	23	37	+	11.431	4.16e-05	0.0107	CCCCCACCTCTGTCT
SP2	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	41	55	+	11.431	4.16e-05	0.0107	AGCCCTCCCCTACCG
SP2	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	41	55	+	11.431	4.16e-05	0.0107	CGCCTGCCCCTCGCC
SP2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	59	73	+	11.431	4.16e-05	0.0107	CCCGCGCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	61	75	+	11.431	4.16e-05	0.0107	GCCCCGCCCTGGAAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	61	75	+	11.431	4.16e-05	0.0107	GCCCCGCCCTGGAAG
SP2	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	72	86	+	11.431	4.16e-05	0.0107	GCTCCTCCTTCCCCA
SP2	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	77	91	+	11.431	4.16e-05	0.0107	GCTCCTCCTTCCCCA
SP2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	96	110	+	11.431	4.16e-05	0.0107	CCCGCGCCCCTTCCC
SP2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	5	19	-	11.431	4.16e-05	0.0107	CCCGCGCCCCTTCCC
SP2	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	24	38	-	11.431	4.16e-05	0.0107	GCTCCTCCTTCCCCA
SP2	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	29	43	-	11.431	4.16e-05	0.0107	GCTCCTCCTTCCCCA
SP2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	42	56	-	11.431	4.16e-05	0.0107	CCCGCGCCCCTTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	53	67	-	11.431	4.16e-05	0.0107	CCCCCTCCCTTCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	53	67	-	11.431	4.16e-05	0.0107	CCCCCTCCCTTCAGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	60	74	-	11.431	4.16e-05	0.0107	AGCCCTCCCCTACCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	60	74	-	11.431	4.16e-05	0.0107	AGCCCTCCCCTACCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	60	74	-	11.431	4.16e-05	0.0107	AGCCCTCCCCTACCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	60	74	-	11.431	4.16e-05	0.0107	AGCCCTCCCCTACCG
SP2	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	85	99	-	11.431	4.16e-05	0.0107	GGACCGCCCACCCGG
ZIC4	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	1	15	-	11.2727	4.16e-05	0.109	CCCCACCCGGCGCGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	15	29	-	11.2727	4.16e-05	0.109	GGCCGCCCGCCGCCG
ZIC4	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	49	63	+	11.2727	4.16e-05	0.109	GGCCGCCCGCCGCCG
ZIC4	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	52	66	-	11.2727	4.16e-05	0.109	GGCCGCCCGCCGCCG
ZIC4	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	86	100	+	11.2727	4.16e-05	0.109	GGCCGCCCGCCGCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	4	18	-	11.6154	4.16e-05	0.335	CGAGCTCAAAGCCCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	4	18	-	11.6154	4.16e-05	0.335	CGAGCTCAAAGCCCA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	55	65	-	11.8525	4.16e-05	0.0511	ACGGAAGTGGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	55	65	-	11.8525	4.16e-05	0.0511	ACGGAAGTGGT
Hic1	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	57	65	+	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	64	72	+	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	64	72	+	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	102	110	+	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	104	112	+	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	5	13	-	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	51	59	-	12.0385	4.16e-05	0.516	GTGCCCACC
Hic1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	51	59	-	12.0385	4.16e-05	0.516	GTGCCCACC
MSC	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	11	20	+	11.3902	4.16e-05	0.569	ACCAGCTTTT
MSC	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	54	63	-	11.3902	4.16e-05	0.569	ACCAGCTTTT
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	81	90	-	11.3902	4.16e-05	0.569	ACCAGCTTTT
MSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	81	90	-	11.3902	4.16e-05	0.569	ACCAGCTTTT
DUX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	52	62	-	11.9362	4.16e-05	1	GAACCCAATCA
DUX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	52	62	-	11.9362	4.16e-05	1	GAACCCAATCA
DUX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	52	62	-	11.9362	4.16e-05	1	GAACCCAATCA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	39	49	-	11.623	4.16e-05	0.14	AACCGGAAAAG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	39	49	-	11.623	4.16e-05	0.14	AACCGGAAAAG
ETV2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	53	63	+	11.623	4.16e-05	0.14	AAGCGGAAACC
ETV2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	52	62	-	11.623	4.16e-05	0.14	AAGCGGAAACC
ETV2	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	59	69	-	11.623	4.16e-05	0.14	AAGCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	59	69	-	11.623	4.16e-05	0.14	AAGCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	59	69	-	11.623	4.16e-05	0.14	AAGCGGAAACC
ETV2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	76	86	+	11.623	4.16e-05	0.14	CACCGGATGTG
Klf12	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	13	27	-	9.60656	4.16e-05	0.054	AGCCCCGCCCCTGCA
Klf12	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	88	102	+	9.60656	4.16e-05	0.054	AGCCCCGCCCCTGCA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	28	-	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	37	-	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	41	51	+	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	60	-	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	72	-	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	74	-	11.5306	4.16e-05	0.285	AGTCACGTGGC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	78	88	+	11.5306	4.16e-05	0.285	AGTCACGTGGC
FIGLA	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	11	20	+	12.1034	4.16e-05	0.859	CCCACCTGGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	11.9655	4.16e-05	0.111	ACCGGAACTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	11.9655	4.16e-05	0.111	ACCGGAACTG
PAX9	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	47	63	+	2.61818	4.16e-05	0.463	CGGCGCGGATCAATGCG
PAX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	47	63	+	2.61818	4.16e-05	0.463	CGGCGCGGATCAATGCG
PAX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	47	63	+	2.61818	4.16e-05	0.463	CGGCGCGGATCAATGCG
PAX9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	47	63	+	2.61818	4.16e-05	0.463	CGGCGCGGATCAATGCG
PAX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	47	63	+	2.61818	4.16e-05	0.463	CGGCGCGGATCAATGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	26	36	+	11.2364	4.16e-05	0.0163	GCAGCTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	81	91	+	11.2364	4.16e-05	0.0163	GCAGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	81	91	+	11.2364	4.16e-05	0.0163	GCAGCTGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	95	105	-	11.2364	4.16e-05	0.0163	GCGTCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	95	105	-	11.2364	4.16e-05	0.0163	GCGTCCGCGCA
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	11	20	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	11	20	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	12	21	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	17	26	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	17	26	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	26	35	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	32	41	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	23	32	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	23	32	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	34	43	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	41	50	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	41	50	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	47	56	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	59	68	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	51	60	-	11.8776	4.16e-05	0.0182	AGGGCGTAGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	51	60	-	11.8776	4.16e-05	0.0182	AGGGCGTAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	62	71	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	62	71	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	62	71	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	62	71	+	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	65	74	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	67	76	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	80	89	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	80	89	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	94	103	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	94	103	-	11.8776	4.16e-05	0.0182	GGGGTGGAGC
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	56	70	+	12.2653	4.16e-05	1	TATTTATTTGCATAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	15	28	-	12.1923	4.16e-05	0.212	GAAGGGTGAGTCAA
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	63	76	-	11.6613	4.16e-05	0.411	CTTTCTGGAGAGCT
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	45	58	+	11.6613	4.16e-05	0.411	CTTTCTGGAGAGCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	95	109	+	10.8182	4.17e-05	0.272	CCACATGACGGAGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	95	109	+	10.8182	4.17e-05	0.272	CCACATGACGGAGCA
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	27	37	-	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	39	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	62	72	-	12.0909	4.17e-05	0.0548	CGGTTTCCGGG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	76	-	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	26	36	+	12.0909	4.17e-05	0.0548	CGGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	26	36	+	12.0909	4.17e-05	0.0548	CGGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	34	44	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	40	50	+	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	40	50	+	12.0909	4.17e-05	0.0548	GGGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	100	110	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	100	110	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	100	110	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	100	110	+	12.0909	4.17e-05	0.0548	CTGCTTCCTGC
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	8	17	-	12.1154	4.17e-05	0.805	GTGACGCAAT
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	8	17	-	12.1154	4.17e-05	0.805	GTGACGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	34	43	-	12.1154	4.17e-05	0.805	GTGACGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	61	70	+	12.1154	4.17e-05	0.805	GTGACGCAAT
SP4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	5	21	+	5.56364	4.17e-05	0.0237	CCAGCCCCGCGCACCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	5	21	-	5.56364	4.17e-05	0.0237	CTAAGCACGCCCCCTTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	5	21	-	5.56364	4.17e-05	0.0237	CTAAGCACGCCCCCTTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	10	26	-	5.56364	4.17e-05	0.0237	CTGTCCACCCCCACCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	10	26	-	5.56364	4.17e-05	0.0237	CTGTCCACCCCCACCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	10	26	-	5.56364	4.17e-05	0.0237	CTGTCCACCCCCACCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	60	76	+	5.56364	4.17e-05	0.0237	AGGACCCCTCCCACTGC
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	4	18	-	11.9296	4.17e-05	0.341	AAGAGGAAAACAATA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	-	12.0385	4.17e-05	0.071	AGCCGCCGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	-	12.0385	4.17e-05	0.071	AGCCGCCGGCA
Mecom	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	71	84	-	9.86517	4.17e-05	1	AAGAGAAGATAGCA
Mecom	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	71	84	-	9.86517	4.17e-05	1	AAGAGAAGATAGCA
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	9	29	-	6.43878	4.17e-05	0.208	CCTACCACTGCGGGCAGCGCT
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	9	29	-	6.43878	4.17e-05	0.208	CCTACCACTGCGGGCAGCGCT
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	9	29	-	6.43878	4.17e-05	0.208	CCTACCACTGCGGGCAGCGCT
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	9	29	-	6.43878	4.17e-05	0.208	CCTACCACTGCGGGCAGCGCT
REST	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	86	106	+	6.43878	4.17e-05	0.208	CCTACCACTGCGGGCAGCGCT
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	49	62	+	11.662	4.17e-05	0.216	CCCAAGGGGAAGTT
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	49	62	+	11.662	4.17e-05	0.216	CCCAAGGGGAAGTT
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	3	15	+	9.66667	4.17e-05	0.258	TGGGAAATCACCA
NFKB2	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	100	112	-	9.66667	4.17e-05	0.258	TGGGAAATCACCA
HIC2	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	8	16	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	10	18	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	15	23	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	15	23	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	20	28	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	20	28	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	29	37	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	31	39	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	31	39	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	50	58	+	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	57	65	-	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	57	65	-	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	78	86	-	11.3818	4.17e-05	0.302	GTGCCCGGC
HIC2	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	87	95	-	11.3818	4.17e-05	0.302	GTGCCCGGC
Foxd3	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	37	48	-	12.0435	4.17e-05	1	TATTATTTTTTT
Foxd3	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	67	78	+	12.0435	4.17e-05	1	TATTATTTTTTT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	13	23	+	11.9231	4.17e-05	0.0123	CCTCCGCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	13	23	+	11.9231	4.17e-05	0.0123	CCTCCGCCCTT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	25	35	-	11.9231	4.17e-05	0.0123	ACTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	25	35	-	11.9231	4.17e-05	0.0123	ACTCCGCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	41	51	-	11.9231	4.17e-05	0.0123	CCTCCGCCCTT
SP1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	64	74	+	11.9231	4.17e-05	0.0123	CCTCCGCCCTT
HOXD11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	29	38	-	12.2535	4.17e-05	1	GTCGTAAAGC
HOXD11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	77	86	+	12.2535	4.17e-05	1	GTCGTAAAGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	18	31	-	10.0345	4.17e-05	0.0292	CGCCCCACCCCCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	18	31	-	10.0345	4.17e-05	0.0292	CGCCCCACCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	41	54	-	10.0345	4.17e-05	0.0292	CGCTCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	41	54	-	10.0345	4.17e-05	0.0292	CGCTCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	41	54	-	10.0345	4.17e-05	0.0292	CGCTCCGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	41	54	-	10.0345	4.17e-05	0.0292	CGCTCCGCCCCCGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr7:35840191..35840305,-__806.1.0.0	85	98	-	10.0345	4.17e-05	0.0292	AGCCGCGCCTCTTT
INSM1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	22	33	+	11.2347	4.17e-05	0.165	GGCTTGGGGGAG
INSM1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	38	49	+	11.2347	4.17e-05	0.165	GGCTTGGGGGAG
INSM1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	66	77	-	11.2347	4.17e-05	0.165	GGCTTGGGGGAG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	65	83	+	11.4516	4.17e-05	0.671	TGCCCTAGAGTTGCCACAG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	65	83	+	11.4516	4.17e-05	0.671	TGCCCTAGAGTTGCCACAG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	39	51	-	4.04082	4.17e-05	0.233	CAGGAATTCCCCT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	64	76	+	4.04082	4.17e-05	0.233	CAGGAATTCCCCT
TBX2	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	79	89	-	11.7818	4.17e-05	1	CAGGTGCGAAA
TBX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	26	36	+	11.7818	4.17e-05	1	CAGGTGCGAAA
TBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	26	36	+	11.7818	4.17e-05	1	CAGGTGCGAAA
TBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	26	36	+	11.7818	4.17e-05	1	CAGGTGCGAAA
TBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	26	36	+	11.7818	4.17e-05	1	CAGGTGCGAAA
TBX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	26	36	+	11.7818	4.17e-05	1	CAGGTGCGAAA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	31	45	-	11.2879	4.17e-05	0.0967	CTCGCGCGCGATCCC
ATF4	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	82	94	+	10.8689	4.17e-05	0.532	CAATGATGTAATG
Ascl2	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	-	11.9286	4.17e-05	0.187	CGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	58	-	11.9286	4.17e-05	0.187	CGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	58	-	11.9286	4.17e-05	0.187	CGCAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	-	11.9286	4.17e-05	0.187	CGCAGCTGCG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	11	+	11.9286	4.17e-05	0.187	CGCAGCTGCA
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	11	+	11.9286	4.17e-05	0.187	CGCAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	11	+	11.9286	4.17e-05	0.187	CGCAGCTGCA
Ascl2	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	+	11.9286	4.17e-05	0.187	CGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	+	11.9286	4.17e-05	0.187	CGCAGCTGCG
Klf1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	76	86	+	11.8333	4.17e-05	0.0469	TTCCACACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	76	86	+	11.8333	4.17e-05	0.0469	AAACACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	17	27	-	11.8333	4.17e-05	0.0469	GACTCCACCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	17	27	-	11.8333	4.17e-05	0.0469	GACTCCACCCT
Klf1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	29	39	-	11.8333	4.17e-05	0.0469	TTCCACACCCT
REL	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	76	85	+	11.9394	4.17e-05	0.297	GGGGATTTTC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	29	36	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	29	36	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	29	36	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	39	46	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	69	76	-	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	78	85	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	78	85	+	11.6447	4.17e-05	0.388	CGACGTGC
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	79	86	-	11.6447	4.17e-05	0.388	CGACGTGC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	2	16	+	9.35714	4.17e-05	0.105	TCCACCCCGGCGCGC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	87	-	9.35714	4.17e-05	0.105	CGCCCCCCGCCGGCA
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	21	30	-	11.4771	4.18e-05	0.0527	TCCCCCCCGC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	22	31	-	11.4771	4.18e-05	0.0527	TCCCCCCCGC
JUND	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	+	11.9149	4.18e-05	0.191	GATGAGTCACA
JUND	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	-	11.9149	4.18e-05	0.191	GATGAGTCACA
JUND	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	+	11.9149	4.18e-05	0.191	GATGAGTCACA
JUND	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	-	11.9149	4.18e-05	0.191	GATGAGTCACA
SPDEF	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	15	25	+	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	13	23	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	41	51	+	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	46	56	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	59	69	+	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	92	102	+	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	90	100	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	90	100	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	90	100	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	90	100	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	93	103	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	93	103	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	93	103	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	93	103	-	11.4182	4.18e-05	0.225	TCCCGGATCCG
HSF1	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	13	25	-	8.63934	4.18e-05	1	TTCTAGTAATTTC
ZEB1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	24	32	+	12.6	4.18e-05	0.354	ACCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	55	63	-	12.6	4.18e-05	0.354	ACCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	55	63	-	12.6	4.18e-05	0.354	ACCCACCTG
ZEB1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	83	91	-	12.6	4.18e-05	0.354	ACCCACCTG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	+	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	+	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	-	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	-	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	+	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	-	11.8878	4.18e-05	0.0857	CGCCCAGAGGCG
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	30	42	+	11.7586	4.18e-05	1	GAGTTTTGCATAA
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	73	83	+	12.6939	4.18e-05	0.137	CACAGCTGCAT
Myog	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	73	83	+	12.6939	4.18e-05	0.137	CACAGCTGCAT
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	73	83	+	12.6939	4.18e-05	0.137	CACAGCTGCAT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	13	26	+	7.07143	4.18e-05	0.0714	GTGGGCCTGGGGAG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	4	17	-	8.8	4.18e-05	0.151	CGGTGACGTAAGAT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	4	17	-	8.8	4.18e-05	0.151	CGGTGACGTAAGAT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	4	17	-	8.8	4.18e-05	0.151	CGGTGACGTAAGAT
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	4	17	-	8.8	4.18e-05	0.151	CGGTGACGTAAGAT
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	4	17	-	8.8	4.18e-05	0.151	CGGTGACGTAAGAT
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	92	105	+	8.8	4.18e-05	0.151	CCCTGACGTCAGCA
ZBED1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	29	41	-	7.52727	4.18e-05	1	ATCTCGCGACAGC
ZBED1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	29	41	-	7.52727	4.18e-05	1	ATCTCGCGACAGC
ZBED1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	81	93	-	7.52727	4.18e-05	1	ATCTCGCGACAGC
ZBED1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	22	34	+	7.52727	4.18e-05	1	ATCTCGCGACAGC
ZBED1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	22	34	+	7.52727	4.18e-05	1	ATCTCGCGACAGC
ZBED1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	74	86	+	7.52727	4.18e-05	1	ATCTCGCGACAGC
Zfx	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	51	64	-	11.8333	4.18e-05	0.0502	GGGGCGGGGGCCTG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	+	11.4754	4.18e-05	0.0586	CGCCGCTGGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	+	11.4754	4.18e-05	0.0586	CGCCGCTGGGGGA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	35	47	-	11.4754	4.18e-05	0.0586	AGCCCGGGAGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	68	80	+	11.4754	4.18e-05	0.0586	AGCCCGGGAGGCC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	42	60	+	11.3871	4.18e-05	0.147	GCGGTCACTGGGGTGGGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	42	60	+	11.3871	4.18e-05	0.147	GCGGTCACTGGGGTGGGGC
PAX5	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	56	74	-	11.3871	4.18e-05	0.147	GGGGGCAGGGATCCGGGAT
E2F4	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	2	12	-	12.0517	4.18e-05	0.0458	GGGCGGGGACG
E2F4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	22	32	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	23	33	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	31	41	-	12.0517	4.18e-05	0.0458	GGGCGGGGACG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	31	41	-	12.0517	4.18e-05	0.0458	GGGCGGGGACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	50	60	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	50	60	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	50	60	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	50	60	-	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	56	66	-	12.0517	4.18e-05	0.0458	GGGCGGGGACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	28	38	+	12.0517	4.18e-05	0.0458	CCGCGCGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	28	38	+	12.0517	4.18e-05	0.0458	CCGCGCGAAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	28	38	+	12.0517	4.18e-05	0.0458	CCGCGCGAAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	28	38	+	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	28	38	+	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	28	38	+	12.0517	4.18e-05	0.0458	CCGCGCGAAGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	46	56	+	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	54	64	+	12.0517	4.18e-05	0.0458	GGGCGGGGACG
E2F4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	83	93	+	12.0517	4.18e-05	0.0458	GGGCGGGGAGT
E2F4	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	103	113	+	12.0517	4.18e-05	0.0458	GGGCGGGGACG
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	60	70	+	12.0517	4.18e-05	0.487	CAATCAGAGCG
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	80	90	+	12.0517	4.18e-05	0.487	CAATCAGAGCG
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	25	35	-	12.0517	4.18e-05	0.487	CAATCAGAGCG
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	45	55	-	12.0517	4.18e-05	0.487	CAATCAGAGCG
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	67	77	-	12.0517	4.18e-05	0.487	CAACCACAGCG
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	67	77	-	12.0517	4.18e-05	0.487	CAACCACAGCG
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	101	111	-	12.0517	4.18e-05	0.487	CAACCACAGCG
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	101	111	-	12.0517	4.18e-05	0.487	CAACCACAGCG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	65	82	-	-11.4342	4.18e-05	0.0393	AGTAGGAAGGAAGCAACA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	33	48	-	11.1455	4.18e-05	0.0374	CCCCGCGCCCGCGCTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	33	48	-	11.1455	4.18e-05	0.0374	CCCCGCGCCCGCGCTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	33	48	-	11.1455	4.18e-05	0.0374	CCCCGCGCCCGCGCTG
EGR4	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	33	48	-	11.1455	4.18e-05	0.0374	CACGGCCCACGCTACT
EGR4	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	67	82	+	11.1455	4.18e-05	0.0374	CACGGCCCACGCTACT
Stat6	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	76	90	+	12	4.18e-05	0.669	GCGTTCCGCGGAACG
Stat6	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	25	39	-	12	4.18e-05	0.669	GCGTTCCGCGGAACG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	21	41	-	10.5714	4.18e-05	0.0152	GGTGAGGGAGGGAGGGAGGGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	84	104	-	10.5714	4.18e-05	0.0152	CGAGGCTGCGGAGGAGAGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	90	110	-	10.5714	4.18e-05	0.0152	GGTGGGGGGAAAAGGGGAGGT
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	5	25	+	10.5714	4.18e-05	0.0152	GGTGGGGGGAAAAGGGGAGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	11	31	+	10.5714	4.18e-05	0.0152	CGAGGCTGCGGAGGAGAGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	11	31	+	10.5714	4.18e-05	0.0152	CGAGGCTGCGGAGGAGAGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	11	31	+	10.5714	4.18e-05	0.0152	CGAGGCTGCGGAGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	11	31	+	10.5714	4.18e-05	0.0152	CGAGGCTGCGGAGGAGAGAGG
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	-	4.86885	4.18e-05	0.598	TGCCATCTGCCA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	-	4.86885	4.18e-05	0.598	TGCCATCTGCCA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	-	4.86885	4.18e-05	0.598	TGCCATCTGCCA
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	-	4.86885	4.18e-05	0.598	TGCCATCTGCCA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	11.8511	4.18e-05	0.103	GCCGGAAGCA
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	11.8511	4.18e-05	0.103	GCCGGAAGCA
SP1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	20	30	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	67	77	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	67	77	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	67	77	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	67	77	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	67	77	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	71	81	-	11.9038	4.19e-05	0.0123	CCTCCTCCCAC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	65	85	-	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	65	85	-	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	69	89	+	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	69	89	+	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	69	89	+	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	69	89	+	6.42857	4.19e-05	0.208	TCCGGACCCTTGGCCAGTGGA
Nr5a2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	46	60	+	11.2414	4.19e-05	0.385	TGGCCCAAGGCCTGT
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	55	69	-	11.2414	4.19e-05	0.385	TGGCCCAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	55	69	-	11.2414	4.19e-05	0.385	TGGCCCAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	55	69	-	11.2414	4.19e-05	0.385	TGGCCCAAGGCCTGT
MEF2D	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	-	8.2	4.19e-05	0.837	GCTATATTTAGA
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	+	8.2	4.19e-05	0.837	GCTATATTTAGA
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	+	8.2	4.19e-05	0.837	GCTATATTTAGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	-	11.3115	4.19e-05	0.0641	AGCCTCGGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	-	11.3115	4.19e-05	0.0641	AGCCTCGGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	-	11.3115	4.19e-05	0.0641	TCCCGTGAAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	-	11.3115	4.19e-05	0.0641	TCCCGTGAAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	-	11.3115	4.19e-05	0.0641	TCCCGTGAAGGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	38	48	-	10.569	4.19e-05	0.0799	GCGCACACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	38	48	-	10.569	4.19e-05	0.0799	GCGCACACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	38	48	-	10.569	4.19e-05	0.0799	GCGCACACGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	38	48	-	10.569	4.19e-05	0.0799	GCGCACACGCA
EGR2	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	67	77	+	10.569	4.19e-05	0.0799	GCGCACACGCA
ETV5	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	11.6909	4.19e-05	0.0984	ACCGGAAACG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	+	11.1724	4.19e-05	0.0554	CGCCTGCCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	+	11.1724	4.19e-05	0.0554	AGCCCCAGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	+	11.1724	4.19e-05	0.0554	AGCCCCAGCGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	+	11.1724	4.19e-05	0.0554	TGCCTTTAAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	+	11.1724	4.19e-05	0.0554	AGCCCCAGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	+	11.1724	4.19e-05	0.0554	AGCCCCAGCGGCG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	-	11.1724	4.19e-05	0.0554	AGCCCCAGCGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	-	11.1724	4.19e-05	0.0554	CGCCTGCCGGGCG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	19	33	+	-3.25714	4.19e-05	0.85	CTGGGCCATAGGACA
EGR1	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	64	77	+	11.2692	4.19e-05	0.019	CTCTCGCCTCCGCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	25	+	11.4138	4.19e-05	0.0108	ACCCCTCCCATCCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	27	41	+	11.4138	4.19e-05	0.0108	CACCCTCCCCCACCC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	50	64	+	11.4138	4.19e-05	0.0108	CACCCGCCCACTGCG
SP2	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	25	39	-	11.4138	4.19e-05	0.0108	GCCCCTCCTTGCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	93	107	-	11.4138	4.19e-05	0.0108	GGTCCTCCCTCGCGC
EGR3	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	6	20	-	7.89655	4.19e-05	0.0364	GCCCGCTCCCGCTTC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	6	20	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	17	31	-	7.89655	4.19e-05	0.0364	GCCCGCCCTCGCCAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	17	31	-	7.89655	4.19e-05	0.0364	GCCCGCCCTCGCCAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	20	34	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	20	34	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	20	34	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	20	34	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	20	34	-	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	56	70	+	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
EGR3	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	95	109	+	7.89655	4.19e-05	0.0364	GCCCGCTCCCGCTTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	81	95	-	7.89655	4.19e-05	0.0364	CTCCGCCGCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	81	95	-	7.89655	4.19e-05	0.0364	CTCCGCCGCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	97	111	+	7.89655	4.19e-05	0.0364	CCCCGGCCCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	33	42	-	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	60	69	-	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	101	110	-	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	5	14	+	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	46	55	+	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	73	82	+	12.2041	4.19e-05	0.0184	GCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	73	82	+	12.2041	4.19e-05	0.0184	GCTCCTCCCT
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	25	-	11.5586	4.19e-05	0.176	CCGGGGCCGGGGGCA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	90	104	+	11.5586	4.19e-05	0.176	CCGGGGCCGGGGGCA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	29	42	+	7.06122	4.19e-05	0.0714	GTGGGACAAGGGTG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	29	42	-	7.06122	4.19e-05	0.0714	GTGGGACAAGGGTG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	73	86	+	7.06122	4.19e-05	0.0714	GTGGGACAAGGGTG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	73	86	-	7.06122	4.19e-05	0.0714	GTGGGACAAGGGTG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	+	12	4.19e-05	0.0682	TGCCCGGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	82	92	+	12	4.19e-05	0.0682	AGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	23	33	-	12	4.19e-05	0.0682	AGCCCCCGGCC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	101	114	-	11.0862	4.19e-05	0.221	GCCATCTTGGAAAC
RXRB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	52	65	+	2.58182	4.19e-05	0.473	GAGGTCGAGTGTCA
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	52	65	+	2.58182	4.19e-05	0.473	GAGGTCGAGTGTCA
RXRB	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	50	63	-	2.58182	4.19e-05	0.473	GAGGTCGAGTGTCA
NR3C2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	74	90	+	6.78723	4.19e-05	0.952	CGGTCCACTCTGTCCCC
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	70	85	-	-0.142857	4.19e-05	0.877	GGGTTCAAAACTTCGG
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	70	85	-	-0.142857	4.19e-05	0.877	GGGTTCAAAACTTCGG
TBX20	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	90	100	+	11.6515	4.19e-05	1	AGGGTGTGAGG
TBX20	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	90	100	+	11.6515	4.19e-05	1	AGGGTGTGAGG
NFYA	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	9	26	-	10.3171	4.19e-05	0.135	CGCGCTGGGATTGGCTGG
Twist2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	1	10	+	12.4098	4.19e-05	1	CCCACATGTG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	62	73	-	11.7429	4.19e-05	0.217	GGCGACCTCCAC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	62	73	-	11.7429	4.19e-05	0.217	GGCGACCTCCAC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	85	96	-	11.7429	4.19e-05	0.217	GGCGACCTCCAC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	85	96	-	11.7429	4.19e-05	0.217	GGCGACCTCCAC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	42	53	+	11.7429	4.19e-05	0.217	GGCGACCTCCAC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	58	69	+	11.7429	4.19e-05	0.217	GGCGACCTCCAC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	61	72	+	11.2623	4.19e-05	0.118	CTACCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	61	72	+	11.2623	4.19e-05	0.118	CTACCGGAAGTT
POU3F1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	3	14	-	11.7952	4.19e-05	1	CTATGCTAATTC
NFYB	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	1	15	+	11.7115	4.2e-05	0.136	ACGCCGCCCAATCGG
NFYB	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	35	49	-	11.7115	4.2e-05	0.136	ACGCCGCCCAATCGG
NFYB	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	66	80	+	11.7115	4.2e-05	0.136	ACGCCGCCCAATCGG
NFYB	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	100	114	-	11.7115	4.2e-05	0.136	ACGCCGCCCAATCGG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	17	27	+	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	17	27	+	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	30	40	+	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	28	38	-	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	41	51	+	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	41	51	+	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	-	12.234	4.2e-05	0.211	AGTGACTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	-	12.234	4.2e-05	0.211	AGTGACTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	96	106	-	12.234	4.2e-05	0.211	GGTGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	96	106	-	12.234	4.2e-05	0.211	GGTGACTCAGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	100	112	-	11.6721	4.2e-05	0.359	CTGTCTGGCAAGT
ZIC4	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	5	19	+	11.2545	4.2e-05	0.109	TGCCGCACGCGGTGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	11	25	+	11.2545	4.2e-05	0.109	CCCCGCCCGCTGGTT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	78	92	-	11.2545	4.2e-05	0.109	GAGCGCCCGCAGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	78	92	-	11.2545	4.2e-05	0.109	GAGCGCCCGCAGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	78	92	-	11.2545	4.2e-05	0.109	GAGCGCCCGCAGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	78	92	-	11.2545	4.2e-05	0.109	GAGCGCCCGCAGCGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	96	110	-	11.2545	4.2e-05	0.109	TGCCGCACGCGGTGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	96	110	-	11.2545	4.2e-05	0.109	TGCCGCACGCGGTGC
USF1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	30	40	-	11.9388	4.2e-05	0.158	CTCATGTGACG
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	30	40	-	11.9388	4.2e-05	0.158	TCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	30	40	-	11.9388	4.2e-05	0.158	TCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	30	40	-	11.9388	4.2e-05	0.158	TCCACGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	30	40	-	11.9388	4.2e-05	0.158	TCCACGTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	30	40	-	11.9388	4.2e-05	0.158	TCCACGTGGCC
USF1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	75	85	+	11.9388	4.2e-05	0.158	CTCATGTGACG
MYBL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	4	15	+	10.9828	4.2e-05	1	ACCATTAACCAC
MYBL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	4	15	+	10.9828	4.2e-05	1	ACCATTAACCAC
E2F7	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	13	26	+	-2.44262	4.2e-05	1	AATTCCCGCGATCT
E2F7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	64	77	+	-2.44262	4.2e-05	1	AATTCCCGCGATCT
E2F7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	64	77	+	-2.44262	4.2e-05	1	AATTCCCGCGATCT
Pax6	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	40	53	-	11.4111	4.2e-05	1	GTCAAGCTTGAGCT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	62	75	+	11.4111	4.2e-05	1	GTCAAGCTTGAGCT
Pax6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	62	75	+	11.4111	4.2e-05	1	GTCAAGCTTGAGCT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	+	12	4.2e-05	0.175	AATGAGTCAGT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	-	12	4.2e-05	0.175	AATGAGTCAGT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	8	18	-	12.1455	4.2e-05	0.0515	TGCCTCAAGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	8	18	-	12.1455	4.2e-05	0.0515	TGCCTCAAGCC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	-	12.1455	4.2e-05	0.0515	AGCCTGGGGCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	16	29	-	10.0172	4.2e-05	0.0292	ATCCCCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	18	31	-	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	18	31	-	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	33	46	-	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	33	46	-	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	42	55	-	10.0172	4.2e-05	0.0292	ATCCCCGCCCCTTC
KLF14	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	60	73	+	10.0172	4.2e-05	0.0292	ATCCCCGCCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	69	82	+	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	69	82	+	10.0172	4.2e-05	0.0292	CGCCCCGCCCCGCT
KLF14	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	86	99	+	10.0172	4.2e-05	0.0292	ATCCCCGCCCCTTC
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	76	86	-	12.7143	4.2e-05	0.158	AGCAGCTGGCT
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	76	86	-	12.7143	4.2e-05	0.158	AGCAGCTGGCT
Tcf12	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	94	104	+	12.7143	4.2e-05	0.158	GACAGCTGAAT
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	113	+	12.7143	4.2e-05	0.158	AGCAGCTGGCT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	85	98	+	7.05102	4.2e-05	0.0714	GGGGCGTTGGGGAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	41	54	+	12.1731	4.2e-05	0.212	CATGTGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	41	54	+	12.1731	4.2e-05	0.212	CATGTGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	9	22	-	12.1731	4.2e-05	0.212	CATGTGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	9	22	-	12.1731	4.2e-05	0.212	CATGTGTGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	65	78	-	12.1731	4.2e-05	0.212	ACCTGATGAGTCAC
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	53	62	-	11.4268	4.2e-05	0.488	CAAATCCCAG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	21	32	-	11.6184	4.2e-05	0.0278	GCCACACCCAAC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	21	32	-	11.6184	4.2e-05	0.0278	GCCACACCCAAC
CTCF	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	2	20	+	9.78689	4.2e-05	0.113	GGGGCGGGAGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	25	43	+	9.78689	4.2e-05	0.113	ACGTCAGCAGGCGGCGCGC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	25	43	+	9.78689	4.2e-05	0.113	ACGTCAGCAGGCGGCGCGC
CTCF	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	36	54	-	9.78689	4.2e-05	0.113	GGGGCGGGAGGGGGCGGGG
CTCF	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	72	90	-	9.78689	4.2e-05	0.113	ACGTCAGCAGGCGGCGCGC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	16	30	-	11.2727	4.2e-05	0.0967	ATATCGCGATACTGC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	84	98	+	11.2727	4.2e-05	0.0967	TCCCCGCGCGCCTTG
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	33	42	-	11.5408	4.2e-05	0.213	CTGAATTTCC
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	82	93	+	11.2041	4.2e-05	0.165	AGTCAGCGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	82	93	+	11.2041	4.2e-05	0.165	AGTCAGCGGGCG
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	12.5606	4.2e-05	0.272	AGCACGTGGA
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	12.5606	4.2e-05	0.272	AGCACGTGGA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	37	48	-	11.9818	4.2e-05	0.055	AGCCCACAGGCA
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	2	11	+	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	24	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	40	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	40	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	40	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	40	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	44	53	-	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	62	71	+	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	91	100	+	11.8265	4.21e-05	0.0182	TGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	91	100	+	11.8265	4.21e-05	0.0182	TGGGCGGGCC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	24	34	+	12.1273	4.21e-05	0.172	GGATGATTCAT
FOSL2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	36	46	+	12.1273	4.21e-05	0.172	ATGTGACTCAT
FOSL2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	29	39	-	12.1273	4.21e-05	0.172	ATGTGACTCAT
FOSL2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	76	86	+	12.1273	4.21e-05	0.172	ATGTGACTCAT
FOSL2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	69	79	-	12.1273	4.21e-05	0.172	ATGTGACTCAT
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	53	63	+	11.2	4.21e-05	0.0164	GAGCGCGCGCC
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	74	87	+	11.6452	4.21e-05	0.411	CTTGCTGGAGAGCG
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	74	87	+	11.6452	4.21e-05	0.411	CTTGCTGGAGAGCG
Mafb	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	14	25	-	11.9551	4.21e-05	0.86	TATTTGCTGAGT
SOX21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	32	46	-	3.2449	4.21e-05	1	AGCAATGGTATAATT
SOX21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	32	46	-	3.2449	4.21e-05	1	AGCAATGGTATAATT
SOX21	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	100	114	-	3.2449	4.21e-05	1	AGCAATGGTATAATT
RUNX1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	6	16	-	11.9483	4.21e-05	0.235	TGCTGTGGTTC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	78	88	+	11.9483	4.21e-05	0.235	CCCTGTGGCCT
RUNX1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	99	109	+	11.9483	4.21e-05	0.235	TGCTGTGGTTC
Barhl1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	-	9.81132	4.21e-05	1	GGTAATTGGC
Barhl1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	-	9.81132	4.21e-05	1	GGTAATTGGC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	21	31	+	11.8182	4.21e-05	0.0469	GTCCACGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	21	31	+	11.8182	4.21e-05	0.0469	GTCCACGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	21	31	+	11.8182	4.21e-05	0.0469	GTCCACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	21	31	+	11.8182	4.21e-05	0.0469	GTCCACGCCCA
SPIC	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	57	70	+	11.6479	4.21e-05	0.216	CGAAACAGGAGGAA
SPIC	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	45	58	-	11.6479	4.21e-05	0.216	CGAAACAGGAGGAA
Hnf4a	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	90	105	+	4.83636	4.21e-05	0.403	GCGGTCAAGGTCCCGA
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	-	11.9878	4.21e-05	0.152	ATCACGTGGG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	-	11.9878	4.21e-05	0.152	ATCACGTGGG
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	-	11.9878	4.21e-05	0.152	ATCACGTGGG
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	-	11.9878	4.21e-05	0.152	ATCACGTGGG
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	-	11.9878	4.21e-05	0.152	ATCACGTGGG
TFEC	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	-	11.9878	4.21e-05	0.152	ATCACGTGCG
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	+	11.9878	4.21e-05	0.152	ATCACGTGCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	22	41	-	5.24771	4.21e-05	0.0542	CCCCCTCTCTCCCCCTCCCT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	42	51	+	10.3007	4.21e-05	0.0848	GGCACGCGGA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	42	51	+	10.3007	4.21e-05	0.0848	GGCACGCGGA
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	18	34	+	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	18	34	+	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	18	34	+	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	18	34	+	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	4	20	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	35	51	+	5.52727	4.21e-05	0.0237	CATGCCCCGCCTCAAGT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	35	51	+	5.52727	4.21e-05	0.0237	CATGCCCCGCCTCAAGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	22	38	-	5.52727	4.21e-05	0.0237	CCGGTCCCGCCCCTCTG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	22	38	-	5.52727	4.21e-05	0.0237	CCGGTCCCGCCCCTCTG
SP4	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	95	111	+	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
SP4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	81	97	-	5.52727	4.21e-05	0.0237	TGGGCTCCGCCTCCTGC
E2F8	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	35	46	-	6.5122	4.21e-05	0.631	TTACCCACCAAA
ATF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	25	38	-	8.78571	4.21e-05	0.151	CGCTGACGTCAGGG
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	25	38	-	8.78571	4.21e-05	0.151	CGCTGACGTCAGGG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	70	83	-	8.78571	4.21e-05	0.151	CTGTGACGTCGCCG
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	70	83	-	8.78571	4.21e-05	0.151	CTGTGACGTCGCCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	18	31	-	7.76596	4.21e-05	0.0988	CGCCCCCCGCAGGC
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	43	56	-	7.76596	4.21e-05	0.0988	CGCCTCCCGCAGTT
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	60	73	+	7.76596	4.21e-05	0.0988	CGCCCCCCGCAGGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	45	55	-	11.8361	4.21e-05	0.0511	CCGGAAGTCTG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	60	70	+	11.8361	4.21e-05	0.0511	CCGGAAGTCTG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	60	70	+	11.8361	4.21e-05	0.0511	CCGGAAGTCTG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	60	70	+	11.8361	4.21e-05	0.0511	CCGGAAGTCTG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	60	70	+	11.8361	4.21e-05	0.0511	CCGGAAGTCTG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	98	108	-	11.8361	4.21e-05	0.0511	GCGGAAGCAGA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	98	108	-	11.8361	4.21e-05	0.0511	GCGGAAGCAGA
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	19	34	+	3.39655	4.21e-05	0.308	CTCCCAGGAGGCCTCA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	35	46	+	11.6212	4.21e-05	0.109	GCGGGTCCGCCT
TBX21	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	57	66	+	11.7455	4.21e-05	1	GAGGTGAGAA
TBX21	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	49	58	-	11.7455	4.21e-05	1	GAGGTGAGAA
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	+	12.2805	4.21e-05	0.472	CTCACGCGAC
FOS	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	16	26	+	12.1702	4.21e-05	0.211	GGTGACTCAGG
FOS	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	33	43	-	12.1702	4.21e-05	0.211	GGTGACTCAGG
FOS	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	33	43	-	12.1702	4.21e-05	0.211	GGTGACTCAGG
FOS	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	72	82	+	12.1702	4.21e-05	0.211	GGTGACTCAGG
FOS	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	89	99	-	12.1702	4.21e-05	0.211	GGTGACTCAGG
Npas2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	12.5574	4.21e-05	0.333	CGCACGTGCC
Npas2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	12.5574	4.21e-05	0.333	CGCACGTGCC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	12.5574	4.21e-05	0.333	GGCACGTGGT
Npas2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	12.5574	4.21e-05	0.333	CGCACGTGCC
Npas2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	12.5574	4.21e-05	0.333	CGCACGTGCC
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	77	87	-	12.2586	4.22e-05	0.895	TGTTGTTTTCC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	-	11.459	4.22e-05	0.0586	GGCCTCTGGGGCG
GSC	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	9	18	-	11.6792	4.22e-05	1	CATAATCCCT
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	13	27	+	11.5495	4.22e-05	0.176	CCTGGGGAAAGGGAA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	15	24	+	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	24	33	+	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	36	45	+	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	39	48	+	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	56	65	+	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	20	29	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	20	29	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	20	29	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	26	35	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	26	35	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	37	46	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	50	59	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	70	79	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	82	91	-	11.4679	4.22e-05	0.0527	CCCCCGCCAC
NFKB1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	16	28	-	4	4.22e-05	0.233	CGGGATTTCCCCC
NFKB1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	16	28	+	4	4.22e-05	0.233	GGGGGAAATCCCG
GSC2	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	57	66	+	11.2373	4.22e-05	1	TCTAATCCGA
ELF3	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	67	79	+	9.58621	4.22e-05	0.138	AAACCGGAAGCGC
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	18	29	-	8.44898	4.22e-05	0.149	GATGAGGTCATC
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	21	32	-	8.44898	4.22e-05	0.149	GGTGATGTCACT
JDP2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	39	50	+	8.44898	4.22e-05	0.149	GGTGATGTCACT
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	65	76	-	8.44898	4.22e-05	0.149	GGTGATGTCACT
JDP2(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	83	94	+	8.44898	4.22e-05	0.149	GGTGATGTCACT
ETV2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	98	108	+	11.6066	4.22e-05	0.141	AGCCGGAAACA
Foxa2	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	45	56	-	12.13	4.22e-05	0.923	TATTTGCATAGG
Foxa2	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	59	70	+	12.13	4.22e-05	0.923	TATTTGCATAGG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	3	13	+	11.9091	4.22e-05	0.132	TTCCGGAAGTT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	24	38	+	11.2823	4.22e-05	1	TTATGAGATGCAAAT
IRF2	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	44	61	-	6.79817	4.22e-05	0.623	AGAAAAAGAAAGCAAATC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	27	38	+	10.3455	4.22e-05	0.101	AACCAGGAAGCT
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	27	38	+	10.3455	4.22e-05	0.101	AACCAGGAAGCT
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	69	-	10.3455	4.22e-05	0.101	CGCCCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	69	-	10.3455	4.22e-05	0.101	CGCCCGGAAGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	69	-	10.3455	4.22e-05	0.101	CGCCCGGAAGCA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	31	44	+	9.85484	4.22e-05	0.686	ATCAAAACGAAACC
IRF7	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	96	109	+	9.85484	4.22e-05	0.686	ATCAAAACGAAACC
YY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	11	21	-	12.0303	4.22e-05	0.273	TACCGCCATCG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	11	21	-	12.0303	4.22e-05	0.273	TACCGCCATCG
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	11	21	-	12.0303	4.22e-05	0.273	TACCGCCATCG
YY2	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	94	104	+	12.0303	4.22e-05	0.273	TACCGCCATCG
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	63	74	-	4.28571	4.22e-05	1	TGACAGGAGACA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	46	57	-	10.2951	4.22e-05	0.0972	AACGGGGAAGTG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	+	11.1552	4.22e-05	0.0554	CGCCTCGGCGGCA
SP3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	13	+	11.748	4.23e-05	0.0182	GCCCCGCCCTT
SP3	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	31	+	11.748	4.23e-05	0.0182	GCCCCGCCCTT
SP3	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	29	39	-	11.748	4.23e-05	0.0182	GCCCCGCCCTT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	99	109	-	11.748	4.23e-05	0.0182	GCCCCGCCCTT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	99	109	-	11.748	4.23e-05	0.0182	GCCCCGCCCTT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	6	21	+	11.1273	4.23e-05	0.0374	CCCCTCCCCCGCGCGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	6	21	+	11.1273	4.23e-05	0.0374	CCCCTCCCCCGCGCGG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	23	+	11.1273	4.23e-05	0.0374	CCCCCCCCCCCCAGTG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	31	46	+	11.1273	4.23e-05	0.0374	CCCCGCCCCGCCACCT
EGR4	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	24	39	-	11.1273	4.23e-05	0.0374	GGCCGCGCACGCACGG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	32	47	-	11.1273	4.23e-05	0.0374	CCCCGCCCCGCCACCT
EGR4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	42	57	-	11.1273	4.23e-05	0.0374	CCCCGCCCTCGGAACC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	58	73	+	11.1273	4.23e-05	0.0374	CCCCGCCCTCGGAACC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	58	73	+	11.1273	4.23e-05	0.0374	CCCCGCCCTCGGAACC
EGR4	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	76	91	+	11.1273	4.23e-05	0.0374	GGCCGCGCACGCACGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	57	71	+	9.32857	4.23e-05	0.105	TCTTCCCCGCGGCGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	60	74	+	9.32857	4.23e-05	0.105	CGCCCCCCGCAGGCC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	31	-	9.32857	4.23e-05	0.105	CGCCCCCCGCAGGCC
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	94	105	-	4.83607	4.23e-05	0.598	TGACAGGTGCGG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	47	57	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	51	61	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	51	61	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	56	66	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	71	81	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	71	81	+	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	7	17	-	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	7	17	-	11.4483	4.23e-05	0.0165	GGCCCGCCCCT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	90	103	-	4.65455	4.23e-05	0.167	GAAAAACGGAACCT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	11	24	+	10	4.23e-05	0.0292	AGTCACACCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	32	45	+	10	4.23e-05	0.0292	GTCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	32	45	+	10	4.23e-05	0.0292	GTCCCCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	32	45	+	10	4.23e-05	0.0292	GTCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	32	45	+	10	4.23e-05	0.0292	GTCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	32	45	+	10	4.23e-05	0.0292	GTCCCCGCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	47	60	-	10	4.23e-05	0.0292	AGTCACACCCACAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	64	77	+	10	4.23e-05	0.0292	AGCCCCGCCCTCCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	64	77	+	10	4.23e-05	0.0292	AGCCCCGCCCTCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	64	77	+	10	4.23e-05	0.0292	AGCCCCGCCCTCCG
KLF14	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	94	107	-	10	4.23e-05	0.0292	AGCCGCGCCCTCCC
SP2	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	14	28	+	11.3966	4.23e-05	0.0108	AGCCCGCCTCTCTAG
SP2	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	44	58	+	11.3966	4.23e-05	0.0108	TCCCCTCCCCGCAGC
SP2	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	46	60	+	11.3966	4.23e-05	0.0108	CGCCCTCCCCGGCCG
SP2	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	64	+	11.3966	4.23e-05	0.0108	GCCCCTCCCCAAGGT
SP2	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	50	64	+	11.3966	4.23e-05	0.0108	CTCCCTCCCTCTTTC
SP2	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	75	89	+	11.3966	4.23e-05	0.0108	CGCCCTCCCCGGCCG
SP2	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	26	40	-	11.3966	4.23e-05	0.0108	CGCCCTCCCCGGCCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	51	65	-	11.3966	4.23e-05	0.0108	GCCCCTCCCCAAGGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	51	65	-	11.3966	4.23e-05	0.0108	GCCCCTCCCCAAGGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	51	65	-	11.3966	4.23e-05	0.0108	GCCCCTCCCCAAGGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	51	65	-	11.3966	4.23e-05	0.0108	GCCCCTCCCCAAGGT
SP2	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	51	65	-	11.3966	4.23e-05	0.0108	CTCCCTCCCTCTTTC
SP2	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	55	69	-	11.3966	4.23e-05	0.0108	CGCCCTCCCCGGCCG
SP2	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	57	71	-	11.3966	4.23e-05	0.0108	TCCCCTCCCCGCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	87	101	-	11.3966	4.23e-05	0.0108	AGCCCGCCTCTCTAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	87	101	-	11.3966	4.23e-05	0.0108	AGCCCGCCTCTCTAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	11	20	-	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	11	20	-	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	40	49	+	11.6263	4.23e-05	0.165	CGAGGGGTAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	42	51	+	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	45	54	+	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	61	70	-	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	64	73	-	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	70	79	-	11.6263	4.23e-05	0.165	GAAGGGGGAG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	95	104	+	11.6263	4.23e-05	0.165	GAAGGGGGAG
ZBTB7A	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	69	80	-	11.7286	4.23e-05	0.217	CGGGACCACAGG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	35	46	+	11.7286	4.23e-05	0.217	CGGGACCACAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	74	94	-	10.551	4.23e-05	0.0153	GGAAGAGAAAATGAGGAAGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	7	27	+	10.551	4.23e-05	0.0153	TGGGCAGTGGGGTGGGAGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	15	35	+	10.551	4.23e-05	0.0153	GGGAGCCGGGAAGGAGGGGAG
RUNX3	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	58	67	+	12.1923	4.23e-05	0.439	TAACCGCACA
Rfx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	15	28	-	11.069	4.23e-05	0.221	ATTGCTATGACAAC
Crem	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	74	83	+	12.4754	4.23e-05	0.266	AATGACGTAT
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	32	41	-	12.4754	4.23e-05	0.266	AATGACGTAT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
SCRT2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	9	21	+	8.29508	4.23e-05	0.828	CAGAAACAGGTGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	13	26	+	11.25	4.23e-05	0.0191	GCGCCGCCTCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	13	26	+	11.25	4.23e-05	0.0191	GCGCCGCCTCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	13	26	+	11.25	4.23e-05	0.0191	GCGCCGCCTCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	14	27	-	11.25	4.23e-05	0.0191	CCCCAGCCCCCGTT
EGR1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	88	101	+	11.25	4.23e-05	0.0191	CCCCAGCCCCCGTT
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	19	31	-	11.6557	4.23e-05	0.359	CTGCCTCCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	82	94	+	11.6557	4.23e-05	0.359	CTGCCTTGCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	82	94	+	11.6557	4.23e-05	0.359	CTGCCTTGCACCT
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	84	96	+	11.6557	4.23e-05	0.359	CTGCCTCCCAGCT
MAX	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	12.7115	4.23e-05	0.293	GCCACGTGAC
MAX	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	12.7115	4.23e-05	0.293	GCCACGTGAC
NR3C1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	+	6.85714	4.23e-05	1	AGGAACATGGTGTTTAC
MSC	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	16	25	+	11.3415	4.23e-05	0.569	GACACCTGCT
MSC	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	99	-	11.3415	4.23e-05	0.569	GACACCTGCT
MTF1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	11	24	-	7.58537	4.23e-05	0.5	GCTGCACGCGCCGC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	-	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	-	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	-	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	-	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	+	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	-	7.18367	4.23e-05	0.253	CCTGACTCATG
NFE2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	+	7.18367	4.23e-05	0.253	CCTGACTCATG
PAX9	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	35	51	+	2.54545	4.23e-05	0.464	GGTCCCGGCTCGACTCA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	7	21	+	11.2576	4.23e-05	0.0967	TTCCCGCGGCGTCCC
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	11.9483	4.23e-05	1	ACCATATGCA
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	46	60	+	11.2909	4.24e-05	0.312	AGAAATTGAAAGAGG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	80	94	+	11.2909	4.24e-05	0.312	AGAAATTGAAAGAGG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	82	96	+	11.2909	4.24e-05	0.312	GAGAGGAGAAAGCGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	-	11.2951	4.24e-05	0.0641	GGCCTCTGGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	-	11.2951	4.24e-05	0.0641	GGCCTCTGGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	-	11.2951	4.24e-05	0.0641	GGCCTCTGGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	-	11.2951	4.24e-05	0.0641	GGCCTCTGGGGGA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	11.8793	4.24e-05	0.113	ACCGGATGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	11.8793	4.24e-05	0.113	ACCGGATGCT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	71	81	-	12.0727	4.24e-05	0.0556	GTACTTCCTGC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	+	11.9818	4.24e-05	0.0682	AGCCGCGGGCT
BHLHE22	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	11.8333	4.24e-05	1	ACCATATGCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	6	20	-	7.86207	4.24e-05	0.0367	CTCAGCCCACGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	6	20	-	7.86207	4.24e-05	0.0367	CTCAGCCCACGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	35	49	+	7.86207	4.24e-05	0.0367	CTCAGCCCACGCCCC
ETV3	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.8028	4.24e-05	0.114	AACGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.8028	4.24e-05	0.114	AACGGAAGTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.8028	4.24e-05	0.114	AACGGAAGTA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	86	96	+	12.3061	4.24e-05	0.788	ATTTCAAAACC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	26	40	-	9.55738	4.24e-05	0.0548	GGCCCCGCCTTCCCT
Klf12	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	43	57	-	9.55738	4.24e-05	0.0548	GGCCCCGCCTTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	58	72	+	9.55738	4.24e-05	0.0548	GGCCCCGCCTTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	56	65	-	12.1837	4.24e-05	0.0184	GTCACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	39	48	+	12.1837	4.24e-05	0.0184	GTCACGCCCC
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	16	29	+	7.02041	4.24e-05	0.0714	CGGGGGCTGGGGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	11	24	-	7.02041	4.24e-05	0.0714	GACGCCCAATGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	91	104	+	7.02041	4.24e-05	0.0714	GACGCCCAATGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	86	99	-	7.02041	4.24e-05	0.0714	CGGGGGCTGGGGGG
TFE3	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	11.5918	4.24e-05	0.109	GCCACGTGCT
TFE3	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	11.5918	4.24e-05	0.109	GCCACGTGAG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	11.5918	4.24e-05	0.109	GCCACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	11.5918	4.24e-05	0.109	GCCACGTGAG
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	11.5918	4.24e-05	0.109	GCCACGTGCT
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	11.5918	4.24e-05	0.109	GCCACGTGCT
TFE3	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	11.5918	4.24e-05	0.109	GCCACGTGCT
SCRT1	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	36	50	+	8.78689	4.24e-05	0.713	TTTCCACAGGTATCT
SCRT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	73	87	+	8.78689	4.24e-05	0.713	TTTCCACAGGTATCT
SCRT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	73	87	+	8.78689	4.24e-05	0.713	TTTCCACAGGTATCT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	27	41	+	8.69737	4.24e-05	0.224	AGGATGAGTCATCAG
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	50	60	+	11.803	4.24e-05	0.0469	GGACCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	50	60	+	11.803	4.24e-05	0.0469	GGACCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	55	65	+	11.803	4.24e-05	0.0469	CCCCACGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	50	60	-	11.803	4.24e-05	0.0469	CCCCACGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	51	61	-	11.803	4.24e-05	0.0469	GGCCACTCCCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	97	108	-	11.6379	4.24e-05	0.365	GAGACCACCGCT
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	97	108	-	11.6379	4.24e-05	0.365	GAGACCACCGCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	21	35	-	11.5405	4.24e-05	0.176	GAGGAGGAGAGGGGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	37	51	+	11.5405	4.24e-05	0.176	GCTGGAGAAAGGGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	37	51	+	11.5405	4.24e-05	0.176	GCTGGAGAAAGGGGA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	73	86	-	12.1538	4.24e-05	0.212	ACTGGCTGAGTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	73	86	-	12.1538	4.24e-05	0.212	ACTGGCTGAGTCAT
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	24	34	+	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	24	34	+	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	24	34	+	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	24	34	+	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	28	38	+	11.1818	4.24e-05	0.0164	CCGCCTGCCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	40	50	+	11.1818	4.24e-05	0.0164	CCGCCTGCCCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	60	70	+	11.1818	4.24e-05	0.0164	CCGCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	61	71	+	11.1818	4.24e-05	0.0164	GCCCCTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	61	71	+	11.1818	4.24e-05	0.0164	GCCCCTGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	61	71	+	11.1818	4.24e-05	0.0164	GCCCCTGCCCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	74	84	+	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	78	88	+	11.1818	4.24e-05	0.0164	GCCCCTGCCCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	27	37	-	11.1818	4.24e-05	0.0164	GCCCCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	31	41	-	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	31	41	-	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	31	41	-	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	31	41	-	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	31	41	-	11.1818	4.24e-05	0.0164	GAGTCTGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	45	55	-	11.1818	4.24e-05	0.0164	CCGCCTGCCCC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	64	77	-	11.6338	4.24e-05	0.216	AAAAACAGGATGTT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	44	54	-	11.8197	4.25e-05	0.0511	GCGGAAATGCC
SPI1	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	57	70	+	4.63636	4.25e-05	0.167	AGAACCAGGAAGTT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	17	30	-	7.57317	4.25e-05	0.5	TCTGCCCACGACCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	17	30	-	7.57317	4.25e-05	0.5	TCTGCCCACGACCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	69	82	-	7.57317	4.25e-05	0.5	TCTGCCCACGACCC
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	38	51	-	5.39394	4.25e-05	0.379	AACCTCCCGCGGCG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	38	51	-	5.39394	4.25e-05	0.379	AACCTCCCGCGGCG
MYF6	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	40	49	-	11.5455	4.25e-05	1	AACACTTGTT
MYF6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	90	99	+	11.5455	4.25e-05	1	AACACTTGTT
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	90	99	+	11.5455	4.25e-05	1	AACACTTGTT
MYF6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	90	99	+	11.5455	4.25e-05	1	AACACTTGTT
HINFP	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	23	34	+	11.6061	4.25e-05	0.109	TGCCGTCCGCCG
HINFP	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	40	51	-	11.6061	4.25e-05	0.109	TGCCGTCCGCCG
HINFP	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	64	75	+	11.6061	4.25e-05	0.109	TGCCGTCCGCCG
HINFP	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	81	92	-	11.6061	4.25e-05	0.109	TGCCGTCCGCCG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	66	85	-	5.22018	4.25e-05	0.0544	AGCCCCACCCACCCCCCTCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	60	79	+	5.22018	4.25e-05	0.0544	AGCCCCACCCACCCCCCTCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	60	79	+	5.22018	4.25e-05	0.0544	AGCCCCACCCACCCCCCTCC
RFX5	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	70	85	+	7.93103	4.25e-05	0.241	GGTCGCCATTGCAATG
ATF4	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	19	31	+	10.8197	4.25e-05	0.532	AAATGATGCCACA
TFEB	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	12.2115	4.25e-05	0.131	GTCACGTGTC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	7	16	-	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	7	16	-	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	7	16	-	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	7	16	-	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	12.2115	4.25e-05	0.131	GTCACGTGTC
TFEB	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	35	44	+	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	12.2115	4.25e-05	0.131	GTCACGTGTC
TFEB	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	12.2115	4.25e-05	0.131	GTCACGTGTC
TFEB	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	71	80	-	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	12.2115	4.25e-05	0.131	GTCACGTGTC
TFEB	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	99	108	+	12.2115	4.25e-05	0.131	ATCACATGCC
TFEB	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	12.2115	4.25e-05	0.131	GTCACGTGTC
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	15	29	-	11.5769	4.25e-05	0.335	AGAGAGCACAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	15	29	-	11.5769	4.25e-05	0.335	AGAGAGCACAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	75	89	+	11.5769	4.25e-05	0.335	AGAGAGCACAGTTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	75	89	+	11.5769	4.25e-05	0.335	AGAGAGCACAGTTCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	-	11.1379	4.25e-05	0.0554	ACCCCGGGAGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	-	11.1379	4.25e-05	0.0554	TCCCCGGGCGGCT
ETV6	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	1	10	+	12.1154	4.25e-05	0.0907	CGGGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	27	36	+	12.1154	4.25e-05	0.0907	CGGGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	27	36	+	12.1154	4.25e-05	0.0907	ACCGGAAATG
ETV6	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	96	105	+	12.1154	4.25e-05	0.0907	CGGGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	97	106	+	12.1154	4.25e-05	0.0907	ACCGGAAATG
ETV6	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	18	-	12.1154	4.25e-05	0.0907	ACCGGAAATG
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	10	19	-	12.1154	4.25e-05	0.0907	CGGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	42	51	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	42	51	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	42	51	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	42	51	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	46	55	-	12.1154	4.25e-05	0.0907	CGGGGAAGTG
ETV6	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	74	83	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	88	-	12.1154	4.25e-05	0.0907	ACCGGAAATG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	81	90	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	81	90	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.1.0	81	90	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.0.0	81	90	-	12.1154	4.25e-05	0.0907	AGAGGAAGTT
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	28	43	+	3.36207	4.25e-05	0.308	GAGCCAGCATGCCCCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	69	86	+	-11.4868	4.25e-05	0.0399	GAAGAGGTGGGAGGAAGA
HSF1	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	71	83	-	8.59016	4.25e-05	1	TTCCTGAATTTTC
BHLHE23	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	72	83	+	11.1636	4.25e-05	1	AACCATATGCAC
MEF2C	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	45	59	+	11.6949	4.25e-05	0.902	GGGGTAAAAATAGGT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	72	85	-	11.803	4.25e-05	0.0502	TGGAGTGCGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	101	114	-	11.803	4.25e-05	0.0502	TGGAGTGCGGCCTC
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	66	79	+	9.72727	4.25e-05	0.33	GAGGGCGAAGGCCA
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	-	10.2097	4.25e-05	0.928	GCTATATTTAGA
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	+	10.2097	4.25e-05	0.928	GCTATATTTAGA
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	+	10.2097	4.25e-05	0.928	GCTATATTTAGA
Stat6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	92	106	+	11.9655	4.25e-05	0.669	TACTTTCAGAGAAAT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	-	11.4426	4.25e-05	0.0586	GGCCTGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	-	11.4426	4.25e-05	0.0586	GGCCTGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	-	11.4426	4.25e-05	0.0586	GGCCTGCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	-	11.4426	4.25e-05	0.0586	GGCCTGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	-	11.4426	4.25e-05	0.0586	GGCCTCTGGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	-	11.4426	4.25e-05	0.0586	GGCCTCTGGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	-	11.4426	4.25e-05	0.0586	GGCCTCTGGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	-	11.4426	4.25e-05	0.0586	GGCCTCTGGGGGA
CENPB	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	87	101	-	11.3269	4.25e-05	0.842	CCCGCGTCGCGCGCC
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	98	112	-	11.3269	4.25e-05	0.842	CCCCCATCTCTCGAA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	19	29	+	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	19	29	+	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	28	38	+	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	22	32	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	22	32	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	22	32	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	28	38	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	41	51	+	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	41	51	+	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	47	57	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	47	57	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	47	57	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	47	57	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	49	59	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	86	96	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	86	96	-	11.8846	4.25e-05	0.0124	CGCCCGCCCCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	36	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	36	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	39	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	60	69	-	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	60	69	-	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	98	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	98	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	98	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	106	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	111	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	111	+	11.8103	4.25e-05	0.123	AGCAGCTGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	23	33	+	12.0172	4.25e-05	0.0458	CGGCGCGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	23	33	+	12.0172	4.25e-05	0.0458	CGGCGCGAGGA
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	95	105	+	11.9828	4.25e-05	0.487	AAATCACAGTG
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	10	20	-	11.9828	4.25e-05	0.487	AAATCACAGTG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	23	34	+	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	23	34	+	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	23	-	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
TFAP2C	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	36	-	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
TFAP2C	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	79	90	+	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	92	-	11.8571	4.26e-05	0.0857	CCCCCCGGGGCC
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	38	49	+	11.2759	4.26e-05	0.33	GCGACCGCGCTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	38	49	+	11.2759	4.26e-05	0.33	GCGACCGCGCTG
TEF	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	75	86	-	11.6	4.26e-05	1	GCTTATGTAACA
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	13	22	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	13	22	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	70	79	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	70	79	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	70	79	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	70	79	+	11.8061	4.26e-05	0.0184	GGGGCGTGTC
mix-a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	5	15	-	12.2857	4.26e-05	1	CATTAATTATT
mix-a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	5	15	-	12.2857	4.26e-05	1	CATTAATTATT
mix-a	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	5	15	-	12.2857	4.26e-05	1	CATTAATTATT
mix-a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	5	15	-	12.2857	4.26e-05	1	CATTAATTATT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	77	88	+	11.6053	4.26e-05	0.0281	GCCACGCCTGCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	77	88	+	11.6053	4.26e-05	0.0281	GCCACGCCTGCT
Spz1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	51	61	+	11.8545	4.26e-05	0.757	AGGGAAACAGA
Spz1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	54	64	-	11.8545	4.26e-05	0.757	AGGGAAACAGA
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	26	36	-	12.1273	4.26e-05	0.0515	AGCCTCAGGGC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	46	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	46	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	46	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	46	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	39	49	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	37	47	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	55	65	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	68	78	+	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	66	76	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	79	89	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	79	89	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	79	89	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	88	98	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	88	98	-	12.1273	4.26e-05	0.0515	CGCCGCGGGCG
RREB1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	19	38	-	5.21101	4.26e-05	0.0544	CAACCCACCACCAAGCTTGC
RREB1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	77	96	+	5.21101	4.26e-05	0.0544	CAACCCACCACCAAGCTTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	43	56	+	9.98276	4.26e-05	0.0293	GAACGCGCCCTCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	43	56	+	9.98276	4.26e-05	0.0293	GAACGCGCCCTCTT
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	46	59	-	9.98276	4.26e-05	0.0293	CAGCGCGCCCCCTC
E2F6	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	7	17	+	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	1	11	-	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	1	11	-	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	1	11	-	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	28	38	+	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	28	38	+	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	28	38	+	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	51	61	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	51	61	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	45	55	-	12.3103	4.26e-05	0.0536	CGGCGGGAAAA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	45	55	-	12.3103	4.26e-05	0.0536	CGGCGGGAAAA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	45	55	-	12.3103	4.26e-05	0.0536	CGGCGGGAAAA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	45	55	-	12.3103	4.26e-05	0.0536	CGGCGGGAAAA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	65	75	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	84	94	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	77	87	-	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	99	109	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	99	109	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	99	109	+	12.3103	4.26e-05	0.0536	TAGCGGGAGAG
E2F6	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	104	114	+	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
E2F6	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	98	108	-	12.3103	4.26e-05	0.0536	AAGCGGGAGCG
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	70	79	+	11.4312	4.26e-05	0.0527	GACCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	70	79	+	11.4312	4.26e-05	0.0527	GACCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	84	93	+	11.4312	4.26e-05	0.0527	GACCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	12	21	-	11.4312	4.26e-05	0.0527	GACCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	12	21	-	11.4312	4.26e-05	0.0527	GACCCCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	22	31	-	11.4312	4.26e-05	0.0527	GACCCCCCCC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	73	84	-	11.1735	4.26e-05	0.165	AGGCAGGGGGAG
INSM1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	91	102	-	11.1735	4.26e-05	0.165	AGGCTGGGGTCG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	13	31	+	11.3548	4.26e-05	0.147	GGAGCCAGTGATCCGTGGG
PAX5	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	1	19	-	11.3548	4.26e-05	0.147	GAAGGTGGCCGAGTGTGTC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	96	114	+	11.3548	4.26e-05	0.147	GAAGGTGGCCGAGTGTGTC
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	96	114	+	11.3548	4.26e-05	0.147	GAAGGTGGCCGAGTGTGTC
EHF	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	38	49	+	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	61	72	+	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	54	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	77	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	77	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	77	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	77	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	77	-	11.2131	4.26e-05	0.118	CCGCCGGAAGTG
TAL1::TCF3	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	100	111	-	11.8764	4.26e-05	1	CGGCCATCTGCT
POU6F2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	64	-	12.2	4.26e-05	1	TGCTAATTAT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	1	13	-	3.95918	4.26e-05	0.233	AGGGATTCCCCCG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	102	114	+	3.95918	4.26e-05	0.233	AGGGATTCCCCCG
EGR3	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	27	41	+	7.84483	4.26e-05	0.0368	TTCCGCCGCCGCTCG
EGR3	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	74	88	-	7.84483	4.26e-05	0.0368	TTCCGCCGCCGCTCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	20	30	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	20	30	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	21	31	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	21	31	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	36	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	29	39	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	33	43	+	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	62	72	+	11.7398	4.26e-05	0.0182	CCCCCACCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	85	95	+	11.7398	4.26e-05	0.0182	CCCCCACCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	9	19	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	9	19	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	9	19	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	31	41	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	40	50	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	40	50	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	43	53	-	11.7398	4.26e-05	0.0182	CCCCCACCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	63	73	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	63	73	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
SP3	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	76	86	-	11.7398	4.26e-05	0.0182	CCCCCACCCCG
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	14	24	+	11.6735	4.26e-05	0.531	CATGCGGGCTG
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	14	24	+	11.6735	4.26e-05	0.531	CATGCGGGCTG
Myb	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	2	11	-	12.541	4.26e-05	0.89	GTAACTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	104	113	+	12.541	4.26e-05	0.89	GTAACTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	104	113	+	12.541	4.26e-05	0.89	GTAACTGCCT
Myb	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	104	113	+	12.541	4.26e-05	0.89	GTAACTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	104	113	+	12.541	4.26e-05	0.89	GTAACTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	104	113	+	12.541	4.26e-05	0.89	GTAACTGCCT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	100	112	+	11.2787	4.26e-05	0.0641	TGCCGGCAGGGCT
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	29	38	+	11.6207	4.26e-05	0.168	GACACGCGCG
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	29	38	+	11.6207	4.26e-05	0.168	GACACGCGCG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	11.6207	4.26e-05	0.168	GGCACGTGGT
NFE2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	-	7.12245	4.26e-05	0.253	TGTGACTCATA
ELF1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	34	-	10.3273	4.26e-05	0.101	AGACCGGAAATA
RAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	11.3559	4.26e-05	1	GCCAATTACC
RAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	11.3559	4.26e-05	1	GCCAATTACC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	12.541	4.26e-05	0.333	GCCACGTGCG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	12.541	4.26e-05	0.333	GCCACGTGCG
Stat5a::Stat5b	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	67	77	+	12.2449	4.27e-05	0.309	CCTTCTCAGAA
REL	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	42	51	+	11.8384	4.27e-05	0.297	TGGGTATTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	42	51	+	11.8384	4.27e-05	0.297	TGGGTATTCC
REL	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	64	73	-	11.8384	4.27e-05	0.297	TGGGTATTCC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	37	51	+	10.4286	4.27e-05	0.117	GGGGGGGAGAAGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	37	51	+	10.4286	4.27e-05	0.117	GGGGGGGAGAAGGCG
CTCF	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	26	44	-	9.7541	4.27e-05	0.113	TAGCCAACAGGAGCCGCAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	31	49	-	9.7541	4.27e-05	0.113	GCTCCGCCTGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	31	49	-	9.7541	4.27e-05	0.113	GCTCCGCCTGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	31	49	-	9.7541	4.27e-05	0.113	GCTCCGCCTGGGGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	31	49	-	9.7541	4.27e-05	0.113	GCTCCGCCTGGGGGCGGGG
CTCF	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	71	89	+	9.7541	4.27e-05	0.113	TAGCCAACAGGAGCCGCAG
ERF	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	42	51	+	11.9286	4.27e-05	0.0915	ACAGGAAGCG
ERF	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	37	46	-	11.9286	4.27e-05	0.0915	ACAGGAAGCG
ERF	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	50	59	+	11.9286	4.27e-05	0.0915	ACAGGAAGCG
ERF	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	69	78	+	11.9286	4.27e-05	0.0915	ACAGGAAGCG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	29	46	+	-11.5	4.27e-05	0.04	GGGAAGGAGCGAGCGAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	69	86	-	-11.5	4.27e-05	0.04	GGGAAGGAGCGAGCGAGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	5	19	+	9.54098	4.27e-05	0.055	CGCCCCGCCCTCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	48	62	-	9.54098	4.27e-05	0.055	CGCCCCGCCCTCCGC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	11	25	-	11.2424	4.27e-05	0.0967	CTCACGCGAGTCCGG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	45	59	-	11.2424	4.27e-05	0.0967	CTCACGCGAGTCCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	29	43	+	11.2424	4.27e-05	0.0967	GTATCACGAGATCTG
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	29	43	+	11.2424	4.27e-05	0.0967	GTATCACGAGATCTG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	56	70	+	11.2424	4.27e-05	0.0967	CTCACGCGAGTCCGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	23	37	+	11.3793	4.27e-05	0.0109	GCCCCTCCCATGGAG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	23	37	+	11.3793	4.27e-05	0.0109	GCCCCTCCCATGGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	33	47	+	11.3793	4.27e-05	0.0109	GCCCCTCCTTAGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	33	47	+	11.3793	4.27e-05	0.0109	GCCCCTCCTTAGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	36	50	+	11.3793	4.27e-05	0.0109	TCACCGCCTCTCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	36	50	+	11.3793	4.27e-05	0.0109	TCACCGCCTCTCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	66	80	+	11.3793	4.27e-05	0.0109	TCCCCTCCTCTGGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	86	100	+	11.3793	4.27e-05	0.0109	GCCCTTCCCCTCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	86	100	+	11.3793	4.27e-05	0.0109	GCCCTTCCCCTCGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	18	32	-	11.3793	4.27e-05	0.0109	GCCCCTCCCATGGAG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	26	40	-	11.3793	4.27e-05	0.0109	TCCCCTCCTCTGGCA
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	25	35	-	12.2041	4.27e-05	0.121	GGCATGTGGCA
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	30	40	+	12.2041	4.27e-05	0.121	GGCATGTGGCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	11	26	-	11.1091	4.27e-05	0.0374	CCCCGCCCCCGTTCTC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	-	11.9273	4.27e-05	0.0893	TGGCCCAGGGCT
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	17	28	-	8.40816	4.27e-05	0.15	CATGACATCAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	17	28	-	8.40816	4.27e-05	0.15	CATGACATCAGA
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	41	57	+	4.72131	4.27e-05	0.563	GGGTCAAACAAAGTCCT
TP53	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	29	46	-	7.81633	4.27e-05	0.979	GGCGAGCCGGGACTTGCG
TP53	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	69	86	+	7.81633	4.27e-05	0.979	GGCGAGCCGGGACTTGCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	51	64	+	4.61818	4.27e-05	0.167	ATATAAAGGAAGTA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	51	64	+	4.61818	4.27e-05	0.167	ATATAAAGGAAGTA
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	27	38	+	10.2787	4.27e-05	0.0972	AACCAGGAAGCT
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	27	38	+	10.2787	4.27e-05	0.0972	AACCAGGAAGCT
MNX1	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	53	62	-	10.8358	4.27e-05	1	GGTAATTATA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	13	24	-	11.8469	4.27e-05	0.0857	CGCCCCCGGCCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	102	+	11.8469	4.27e-05	0.0857	CGCCCCCGGCCG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	50	69	+	5.20183	4.27e-05	0.0545	AGGCCCACCACCCGCCACCG
SP3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	7	17	+	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	10	20	+	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	81	91	+	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	5	15	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	5	15	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	5	15	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	5	15	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	24	34	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	64	74	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	95	105	-	11.7317	4.27e-05	0.0182	CCCTCGCCCCC
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	+	11.9636	4.27e-05	0.055	AGCCCGGGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	-	11.9636	4.27e-05	0.055	AGCCCGGGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	112	+	11.9636	4.27e-05	0.055	CGCCTCCGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	112	+	11.9636	4.27e-05	0.055	CGCCTCCGGCCG
EGR1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	21	34	+	11.2308	4.27e-05	0.0192	ATCCCTCCCTCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	11	24	-	11.2308	4.27e-05	0.0192	GAGCTGCCCCCACC
EGR1	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	21	34	-	11.2308	4.27e-05	0.0192	CTGCCGCCCCTGGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	39	52	-	11.2308	4.27e-05	0.0192	TATCCACCCCCAGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	81	94	+	11.2308	4.27e-05	0.0192	CTGCCGCCCCTGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	81	94	+	11.2308	4.27e-05	0.0192	CTGCCGCCCCTGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	89	102	-	11.2308	4.27e-05	0.0192	GGTCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	89	102	-	11.2308	4.27e-05	0.0192	GGTCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	89	102	-	11.2308	4.27e-05	0.0192	GGTCCGCCCCTTCC
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	34	44	+	12.2931	4.27e-05	0.0536	TGGCGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	34	44	+	12.2931	4.27e-05	0.0536	TGGCGGGAGCT
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	59	69	+	11.9184	4.27e-05	0.158	GCCAGGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	59	69	+	11.9184	4.27e-05	0.158	GCCAGGTGACA
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	59	69	+	11.9184	4.27e-05	0.158	GCCAGGTGACA
USF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	59	69	+	11.9184	4.27e-05	0.158	GCCAGGTGACA
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	59	69	+	11.9184	4.27e-05	0.158	GCCAGGTGACA
PRDM1	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	38	52	-	11.2727	4.27e-05	0.312	GGAGGGAGAAAGCGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	2	22	-	10.5306	4.27e-05	0.0154	GAGGGAGGGAGGGAGCGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	2	22	-	10.5306	4.27e-05	0.0154	GAGGGAGGGAGGGAGCGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	18	38	-	10.5306	4.27e-05	0.0154	GAGGGAGGGAGGGAGCGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	23	43	-	10.5306	4.27e-05	0.0154	CGGGGTGGGGGAGGGTGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	60	80	-	10.5306	4.27e-05	0.0154	TGAAGAGGAGGCAGGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	60	80	-	10.5306	4.27e-05	0.0154	TGAAGAGGAGGCAGGGGGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	64	84	-	10.5306	4.27e-05	0.0154	GAGGGAGCTTGTGCAGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	77	97	-	10.5306	4.27e-05	0.0154	GGGGGAAAAAAAGGCAAGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	3	23	+	10.5306	4.27e-05	0.0154	TGATGCGGAATGGAGGAAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	3	23	+	10.5306	4.27e-05	0.0154	TGATGCGGAATGGAGGAAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	35	55	+	10.5306	4.27e-05	0.0154	TGAAGAGGAGGCAGGGGGCGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	18	27	+	11.3571	4.27e-05	0.23	GGTCATGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	18	27	+	11.3571	4.27e-05	0.23	GGTCATGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	45	54	-	11.3571	4.27e-05	0.23	GGTCATGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	45	54	-	11.3571	4.27e-05	0.23	GGTCATGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	58	67	-	11.3571	4.27e-05	0.23	GGTCATGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	58	67	-	11.3571	4.27e-05	0.23	GGTCATGTGG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	53	67	+	10.6364	4.27e-05	0.298	TTGGTTTTTTTTTTT
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	-	7.91379	4.28e-05	0.241	AGTTTCTGTGGAAACT
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	-	7.91379	4.28e-05	0.241	AGTTTCTGTGGAAACT
RFX5	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	99	114	+	7.91379	4.28e-05	0.241	GGCTGCTTTAGAAACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	+	12.1489	4.28e-05	0.211	GCTGACTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	+	12.1489	4.28e-05	0.211	GCTGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	-	12.1489	4.28e-05	0.211	TGTGACTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	-	12.1489	4.28e-05	0.211	TGTGACTCAGC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	-	12.1489	4.28e-05	0.211	TGTGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	-	12.1489	4.28e-05	0.211	TGTGACTCAGC
Stat4	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	35	48	-	12.1552	4.28e-05	0.254	CTGATGGGAAGTGA
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	37	46	+	11.9438	4.28e-05	0.93	GATCTGGCAG
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	32	41	-	11.9438	4.28e-05	0.93	TATCTGGAAT
MTF1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	68	81	+	7.54878	4.28e-05	0.5	TGCGCGCCCGGCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	10	23	-	7.54878	4.28e-05	0.5	TGCGCGCCCGGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	10	23	-	7.54878	4.28e-05	0.5	TGCGCGCCCGGCCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	49	59	-	11.1636	4.28e-05	0.0165	GCGCGCGTGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	49	59	-	11.1636	4.28e-05	0.0165	GCGCGCGTGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	49	59	-	11.1636	4.28e-05	0.0165	GCGCGCGTGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	49	59	-	11.1636	4.28e-05	0.0165	GCGCGCGTGCA
PLAG1	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	2	15	-	7	4.28e-05	0.0714	GGGGCTGCAGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	24	37	-	7	4.28e-05	0.0714	GAGGCCATCCGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	24	37	-	7	4.28e-05	0.0714	GAGGCCATCCGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	56	69	-	7	4.28e-05	0.0714	GAGGCCATCCGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	56	69	-	7	4.28e-05	0.0714	GAGGCCATCCGGGA
PLAG1	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	100	113	+	7	4.28e-05	0.0714	GGGGCTGCAGGGGA
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	48	59	+	11.77	4.28e-05	1	TGCATGCAAATT
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	1	11	+	12.6735	4.28e-05	0.137	GACAGCTGAGT
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	1	11	+	12.6735	4.28e-05	0.137	GACAGCTGAGT
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	1	11	+	12.6735	4.28e-05	0.137	GACAGCTGAGT
Myog	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	1	11	+	12.6735	4.28e-05	0.137	GACAGCTGAGT
Myog	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	13	23	-	12.6735	4.28e-05	0.137	AACAGCTGAGA
Myog	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	42	52	-	12.6735	4.28e-05	0.137	CACAGCTGAGG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	56	66	-	12.6735	4.28e-05	0.137	AGCAGGTGCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	56	66	-	12.6735	4.28e-05	0.137	AGCAGGTGCAG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	78	+	12.6735	4.28e-05	0.137	AGCAGGTGCAG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	78	+	12.6735	4.28e-05	0.137	AGCAGGTGCAG
Myog	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	102	+	12.6735	4.28e-05	0.137	AACAGCTGAGA
Hes2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	9	21	+	11.2381	4.28e-05	0.475	TTACCGCACGTGG
Hes2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	36	48	+	11.2381	4.28e-05	0.475	CTCACACACGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	36	48	+	11.2381	4.28e-05	0.475	CTCACACACGTGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	36	48	+	11.2381	4.28e-05	0.475	CTCACACACGTGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	36	48	+	11.2381	4.28e-05	0.475	CTCACACACGTGC
Hes2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	94	106	-	11.2381	4.28e-05	0.475	TTACCGCACGTGG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	60	74	+	11.2182	4.28e-05	0.109	ACCTCCCTGCTGTGT
GATA2	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	26	39	-	12.3636	4.28e-05	1	GGACTCTTATCTGG
IRF8	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	23	36	+	-0.163636	4.28e-05	0.732	GTGATACCGGAAGT
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	73	84	+	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	73	84	+	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	2	13	-	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	2	13	-	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	2	13	-	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	2	13	-	10.0364	4.28e-05	0.186	TCTGACGTCAGC
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	18	29	-	10.0364	4.28e-05	0.186	TCTGACGTCAGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	12.6923	4.28e-05	0.293	GCCACGTGCG
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	12.6923	4.28e-05	0.293	GCCACGTGCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	75	87	+	9.59091	4.28e-05	0.258	AGGGGATTCCCAG
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	38	+	11.5909	4.28e-05	0.109	CCACGTGCGCAG
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	27	38	-	11.5909	4.28e-05	0.109	CCACGTGCGCAG
HINFP	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	91	102	+	11.5909	4.28e-05	0.109	CTGCGTCCGGGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	74	83	-	12.1967	4.28e-05	0.218	AGGCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	74	83	-	12.1967	4.28e-05	0.218	AGGCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	24	33	+	12.1967	4.28e-05	0.218	TCTCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	24	33	+	12.1967	4.28e-05	0.218	TCTCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	24	33	+	12.1967	4.28e-05	0.218	TCTCACGTGA
PHOX2A	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	69	79	+	12.04	4.28e-05	1	TAATGTAATTT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	+	11.2714	4.29e-05	0.218	GTCACGTGGA
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	+	11.2714	4.29e-05	0.218	GTCACGTGGA
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	+	11.2714	4.29e-05	0.218	GTCACGTGGA
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	+	11.2714	4.29e-05	0.218	GTCACGTGGA
ZNF143	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	27	42	-	3.32759	4.29e-05	0.308	CTCCCCTAATGCCACG
Zfx	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	3	16	-	11.7879	4.29e-05	0.0502	GCAGCCCTGGCCTT
Zfx	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	12	25	-	11.7879	4.29e-05	0.0502	GTAGTCCAGGCCTC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	30	43	+	11.7879	4.29e-05	0.0502	CCGGCCCAGCCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	99	112	+	11.7879	4.29e-05	0.0502	GCAGCCCTGGCCTT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	53	67	+	7.82759	4.29e-05	0.0368	GCCCGCCGCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	53	67	+	7.82759	4.29e-05	0.0368	GCCCGCCGCCGCCCC
EGR3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	48	62	-	7.82759	4.29e-05	0.0368	GCCCGCCGCCGCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	87	101	+	7.82759	4.29e-05	0.0368	CCCCTCCCCCGCCGG
HSF1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	100	112	+	8.55738	4.29e-05	1	TTCTAGGAAATTC
Myc	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	1	10	+	12.5636	4.29e-05	0.365	GCACGTGCTT
Myc	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	53	62	-	12.5636	4.29e-05	0.365	GCACGTGCTT
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	53	62	-	12.5636	4.29e-05	0.365	GCACGTGCTT
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	53	62	-	12.5636	4.29e-05	0.365	GCACGTGCTT
Myc	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	53	62	-	12.5636	4.29e-05	0.365	GCACGTGCTT
Myc	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	105	114	-	12.5636	4.29e-05	0.365	GCACGTGCTT
ELK4	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	58	-	12.0545	4.29e-05	0.0559	CTGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	30	40	+	12.0545	4.29e-05	0.0559	CCGCTTCCGCA
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	30	40	+	12.0545	4.29e-05	0.0559	CCGCTTCCGCA
ELK4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	58	68	+	12.0545	4.29e-05	0.0559	CTGCTTCCGCT
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	65	75	+	12.0545	4.29e-05	0.0559	GGACTTCCTGT
CEBPE	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	6	15	-	12.0182	4.29e-05	0.721	ATTGCGTAAC
CEBPE	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	95	104	-	12.0182	4.29e-05	0.721	ATTGCGTAAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	20	+	12.0182	4.29e-05	0.721	ATTGCGTAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	20	+	12.0182	4.29e-05	0.721	ATTGCGTAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	20	+	12.0182	4.29e-05	0.721	ATTGCGTAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	20	+	12.0182	4.29e-05	0.721	ATTGCGTAAC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	48	+	11.2623	4.29e-05	0.0641	GGCCCGAAGGGGA
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	67	79	-	11.2623	4.29e-05	0.0641	GGCCCGAAGGGGA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	+	11.4262	4.29e-05	0.0586	AGCCCCCGCGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	18	-	11.4262	4.29e-05	0.0586	CGCCTGCAGGGCG
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	97	109	+	11.4262	4.29e-05	0.0586	CGCCTGCAGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	-	11.4262	4.29e-05	0.0586	GGCCGCGCGGGCG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	83	93	+	11.3273	4.29e-05	0.225	ACCCGGATGGA
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.1.0	83	93	+	11.3273	4.29e-05	0.225	ACCCGGATGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	13	23	+	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	13	23	+	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	13	23	+	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	13	23	+	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	13	23	+	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	21	31	-	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	21	31	-	11.8033	4.29e-05	0.0511	GCGGAAGAGGG
Gabpa	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	46	56	+	11.8033	4.29e-05	0.0511	GCGGAAGAGCC
Gabpa	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	38	48	-	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	67	77	+	11.8033	4.29e-05	0.0511	ACGGAAGTGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	90	103	-	9.96552	4.29e-05	0.0294	GGGTCCGCCCCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	90	103	-	9.96552	4.29e-05	0.0294	GGGTCCGCCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	90	103	-	9.96552	4.29e-05	0.0294	GGGTCCGCCCCTTC
IRF9	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	46	60	-	-0.6	4.29e-05	0.522	ACGTAAAATGAAACC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	76	90	-	-0.6	4.29e-05	0.522	AATAATACTGAAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	76	90	-	-0.6	4.29e-05	0.522	AATAATACTGAAAGT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	6	16	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	6	16	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	6	16	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	12	22	+	12.1091	4.29e-05	0.0515	CCCCCGAGGCC
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	18	28	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	23	33	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	23	33	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	41	51	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	41	51	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	38	48	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	82	92	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	87	97	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	89	99	+	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	87	97	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	103	-	12.1091	4.29e-05	0.0515	CCCCCGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	103	113	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	103	113	-	12.1091	4.29e-05	0.0515	CGCCGCCGGCC
E2F8	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	18	29	+	6.45122	4.29e-05	0.631	GTTCCCGCAAAC
E2F8	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	86	97	-	6.45122	4.29e-05	0.631	GTTCCCGCAAAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	77	90	+	12.1346	4.29e-05	0.212	GAGAAATGAGTAAG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	19	32	-	12.1346	4.29e-05	0.212	CTGCAGTGAGTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	25	38	-	12.1346	4.29e-05	0.212	GAGAAATGAGTAAG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	1	15	+	9.52459	4.29e-05	0.0551	TGCGACGCCCAGCGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	37	51	+	9.52459	4.29e-05	0.0551	TGCGACGCCCAGCGA
Myod1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	102	+	12.6327	4.29e-05	0.15	AACAGCTGCGGCC
Myod1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	13	25	-	12.6327	4.29e-05	0.15	AACAGCTGCGGCC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	25	37	-	12.6327	4.29e-05	0.15	CGCACCTGTCCAC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	25	37	-	12.6327	4.29e-05	0.15	CGCACCTGTCCAC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	25	37	-	12.6327	4.29e-05	0.15	CGCACCTGTCCAC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	25	37	-	12.6327	4.29e-05	0.15	CGCACCTGTCCAC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	25	37	-	12.6327	4.29e-05	0.15	CGCACCTGTCCAC
RELA	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	5	14	-	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	33	42	+	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	33	42	+	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	33	42	+	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	33	42	+	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	73	82	-	11.5306	4.29e-05	0.213	TGGGTTTTCC
RELA	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	101	110	+	11.5306	4.29e-05	0.213	TGGGTTTTCC
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	6	17	-	11.9307	4.29e-05	1	AGTGTAAACAAG
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	6	17	-	11.9307	4.29e-05	1	AGTGTAAACAAG
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	62	73	+	11.9307	4.29e-05	1	AGTGTAAACAAG
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	62	73	+	11.9307	4.29e-05	1	AGTGTAAACAAG
Rarb(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	2	18	-	-0.469697	4.29e-05	0.785	AGCTCATACACAGTGCA
Rarb(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	97	113	+	-0.469697	4.29e-05	0.785	AGCTCATACACAGTGCA
Hmx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	73	89	-	11.5854	4.29e-05	1	GCGAGCAATTGAGGAAG
ESR2	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	36	50	+	11.5192	4.29e-05	0.426	GGGGCAGGGAGCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	52	62	-	11.8654	4.3e-05	0.0126	TCCCCGCCCTA
ELK3	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	11.8966	4.3e-05	0.109	ACCGGAAACG
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.8966	4.3e-05	0.109	AGCGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.8966	4.3e-05	0.109	AGCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	12.0909	4.3e-05	0.108	TCCGGAAATA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	12.0909	4.3e-05	0.108	TCCGGAAATA
ERG	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	12.0909	4.3e-05	0.108	TCCGGAAATA
ERG	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	12.0909	4.3e-05	0.108	TCCGGAAATA
ELF5	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	8	18	-	11.8909	4.3e-05	0.132	GCCAGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	9	19	-	11.8909	4.3e-05	0.132	AGCAGGAAGCA
ELF5	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	41	51	+	11.8909	4.3e-05	0.132	AACAGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	42	52	+	11.8909	4.3e-05	0.132	GCCAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	42	52	+	11.8909	4.3e-05	0.132	GCCAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	70	80	+	11.8909	4.3e-05	0.132	GCCAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	70	80	+	11.8909	4.3e-05	0.132	GCCAGGAAGTG
ELF5	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	96	106	+	11.8909	4.3e-05	0.132	AGCAGGAAGCA
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	3	13	+	12.0909	4.3e-05	0.174	CTATGAGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	3	13	+	12.0909	4.3e-05	0.174	CTATGAGTCAG
BATF3	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	+	2.69697	4.3e-05	0.168	CCGTGACGTCACGG
BATF3	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	+	2.69697	4.3e-05	0.168	CCGTGACGTCACGG
BATF3	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	-	2.69697	4.3e-05	0.168	CCGTGACGTCACGG
BATF3	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	-	2.69697	4.3e-05	0.168	CCGTGACGTCACGG
PROX1	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	50	61	+	9.89091	4.3e-05	1	CAAGATTCCTTA
PROX1	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	94	105	-	9.89091	4.3e-05	1	CAAGATTCCTTA
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	60	71	+	10.3091	4.3e-05	0.101	GAGCCGGAAGCT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	65	76	+	10.3091	4.3e-05	0.101	GAGCCGGAAGCT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	65	76	+	10.3091	4.3e-05	0.101	GAGCCGGAAGCT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	65	76	+	10.3091	4.3e-05	0.101	GAGCCGGAAGCT
PKNOX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	-	4.22449	4.3e-05	1	GGACAGCTGTTA
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	1	14	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	1	14	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	1	14	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	1	14	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	1	14	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	42	55	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	42	55	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	42	55	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	42	55	+	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
MTF1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	101	114	-	7.53659	4.3e-05	0.5	TCTGCGCTCGGCTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.3191	4.3e-05	0.0838	ACCGGAAGGC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.3191	4.3e-05	0.0838	ACCGGAAGGC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.3191	4.3e-05	0.0838	ACCGGAAGGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	-	11.8511	4.3e-05	0.191	GATGAGTCACT
ZIC3	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	57	71	+	9.28571	4.3e-05	0.105	CCCATCCCGCTGGGA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	77	91	+	9.28571	4.3e-05	0.105	TCCTCCCCACAGTGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	3	17	-	9.28571	4.3e-05	0.105	CCCACCCCGCCGAGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	3	17	-	9.28571	4.3e-05	0.105	CCCACCCCGCCGAGG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	3	17	-	9.28571	4.3e-05	0.105	CCCACCCCGCCGAGG
BCL6B	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	13	29	-	-14.0143	4.3e-05	0.94	TGCGGTCTAGGAAGTAG
BCL6B	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	86	102	+	-14.0143	4.3e-05	0.94	TGCGGTCTAGGAAGTAG
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	5	23	-	11.3387	4.3e-05	0.147	GGATTCAGCGGACTGCGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	5	23	-	11.3387	4.3e-05	0.147	GGATTCAGCGGACTGCGGC
Sox1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	99	113	-	5.41379	4.3e-05	1	GACACTGGGATCGTT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	61	78	-	-11.5263	4.3e-05	0.0402	GAAAGGAAGGATTGAACC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	55	68	-	10.8077	4.3e-05	0.508	CGTAACACGTCAGA
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	55	68	-	10.8077	4.3e-05	0.508	CGTAACACGTCAGA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	19	28	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	19	28	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	58	67	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	58	67	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	59	68	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	104	113	-	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	35	44	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	37	46	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	37	46	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	37	46	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	37	46	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	53	62	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	54	63	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	54	63	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	54	63	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	54	63	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	74	83	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	74	83	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	74	83	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	74	83	+	12.1224	4.3e-05	0.0184	GCTCCTCCCA
ELF4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	41	52	+	10.2623	4.3e-05	0.0972	GTCCAGGAAGTT
ELF4	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	42	53	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	44	55	+	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	10	21	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	10	21	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	10	21	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	10	21	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	10	21	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	62	73	-	10.2623	4.3e-05	0.0972	GCCCCGGAACTG
ELF4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	63	74	-	10.2623	4.3e-05	0.0972	GTCCAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	94	105	-	10.2623	4.3e-05	0.0972	GTCCAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	94	105	-	10.2623	4.3e-05	0.0972	GTCCAGGAAGTT
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	25	38	-	8.72857	4.3e-05	0.151	CAGTGACATCATTG
ATF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	25	38	-	8.72857	4.3e-05	0.151	CAGTGACATCATTG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	25	38	-	8.72857	4.3e-05	0.151	CAGTGACATCATTG
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	25	38	-	8.72857	4.3e-05	0.151	CAGTGACATCATTG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	25	38	-	8.72857	4.3e-05	0.151	CAGTGACATCATTG
HES5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	54	65	-	4.53448	4.3e-05	0.296	CGGCGCGTGGCG
SP2	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	18	32	+	11.3621	4.3e-05	0.0109	GTTCCACCCACCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	75	89	+	11.3621	4.3e-05	0.0109	GCCCCGCTCTCCAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	75	89	+	11.3621	4.3e-05	0.0109	GCCCCGCTCTCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	75	89	+	11.3621	4.3e-05	0.0109	GCCCCGCTCTCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	75	89	+	11.3621	4.3e-05	0.0109	GCCCCGCTCTCCAGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	76	90	+	11.3621	4.3e-05	0.0109	TTTCCTCCCCTTTCC
SP2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	113	+	11.3621	4.3e-05	0.0109	ACTCCGCCCCCAGAG
SP2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	2	16	-	11.3621	4.3e-05	0.0109	ACTCCGCCCCCAGAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	24	38	-	11.3621	4.3e-05	0.0109	GGCCCTCCCAGCCCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	74	84	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	74	84	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	74	84	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	74	84	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	102	112	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	102	112	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	102	112	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	102	112	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	102	112	+	10.5172	4.3e-05	0.0799	GCTCCCACGCT
EBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	3	16	+	10.2623	4.3e-05	0.365	TCTCCCGCGGGAAC
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	3	16	+	10.2623	4.3e-05	0.365	TCTCCCGCGGGAAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	12.5758	4.3e-05	0.236	GGCACGTGTT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	12.5758	4.3e-05	0.236	GGCACGTGTT
FEV	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	12.0962	4.31e-05	0.116	ACCGGAAACT
FEV	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	12.0962	4.31e-05	0.116	ACCGGAAACT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	12.0962	4.31e-05	0.116	ACCGGAAGGC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	12.0962	4.31e-05	0.116	ACCGGAAGGC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	12.0962	4.31e-05	0.116	ACCGGAAGGC
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	33	43	+	9.60345	4.31e-05	1	TTAAGGTCATC
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	33	43	+	9.60345	4.31e-05	1	TTAAGGTCATC
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	53	63	+	9.60345	4.31e-05	1	TTAAGGTCATC
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	53	63	+	9.60345	4.31e-05	1	TTAAGGTCATC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	49	58	-	11.7959	4.31e-05	0.0186	TGGGTGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	66	75	-	11.7959	4.31e-05	0.0186	TGGGTGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	66	75	-	11.7959	4.31e-05	0.0186	TGGGTGCGGC
SOX21	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	5	19	+	3.16327	4.31e-05	1	AACAAGGGTATTGGC
SOX21	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	+	3.16327	4.31e-05	1	GACAATTAAATTGTA
SOX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	-	3.16327	4.31e-05	1	GACAATTAAATTGTA
SOX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	-	3.16327	4.31e-05	1	GACAATTAAATTGTA
INSM1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	102	113	-	11.1429	4.31e-05	0.166	TGCCTGCGGGCT
MSC	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	+	11.2805	4.31e-05	0.569	AGCAGCTGCT
MSC	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	-	11.2805	4.31e-05	0.569	AGCAGCTGCT
Sox3	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	97	106	+	12.431	4.31e-05	0.659	CCTTTGTGCG
HEY1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	20	29	+	12.0727	4.31e-05	0.137	CCCACGCGCC
HEY1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	39	48	+	12.0727	4.31e-05	0.137	CCCACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	95	-	12.0727	4.31e-05	0.137	CCCACGCGCC
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	-	12	4.31e-05	0.0732	AGCCTCGGGCC
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	1	9	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	24	32	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	23	31	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	25	33	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	50	58	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	52	60	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	46	54	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	46	54	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	61	69	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	55	63	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	55	63	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	55	63	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	55	63	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	82	90	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	82	90	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	84	92	+	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	83	91	-	10.3793	4.31e-05	0.243	ATGACTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	106	114	-	10.3793	4.31e-05	0.243	ATGACTCAA
Rfx1	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	63	76	+	11.0345	4.31e-05	0.221	GCTTCCCAGGAAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	80	93	+	11.0345	4.31e-05	0.221	ATTGTCATGGAGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	80	93	+	11.0345	4.31e-05	0.221	ATTGTCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	80	93	+	11.0345	4.31e-05	0.221	ATTGTCATGGAGAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	80	93	+	11.0345	4.31e-05	0.221	ATTGTCATGGAGAC
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	17	26	-	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	60	69	-	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	60	69	-	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	58	67	+	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	63	72	+	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	63	72	+	11.9	4.31e-05	0.187	AGCTGCTGCC
Ascl2	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	86	95	+	11.9	4.31e-05	0.187	AGCTGCTGCC
GLIS2	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	25	38	-	9.36066	4.31e-05	0.185	CACCCCCTCCAGAG
GLIS2	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	77	90	+	9.36066	4.31e-05	0.185	CACCCCCTCCAGAG
Klf1	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	52	62	+	11.7879	4.31e-05	0.0469	CATCACACCCA
Klf1	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	53	63	-	11.7879	4.31e-05	0.0469	CATCACACCCA
STAT1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	10	20	-	11.5455	4.31e-05	0.317	TTGCCAGGAAG
ETV4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.8276	4.31e-05	0.114	ACCGGAAGGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	22	37	+	11.0909	4.31e-05	0.0374	GCCCGCCCGCGCCGGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	22	37	+	11.0909	4.31e-05	0.0374	GCCCGCCCGCGCCGGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	34	49	+	11.0909	4.31e-05	0.0374	CCCCCCCCCCGCGCGC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	38	53	+	11.0909	4.31e-05	0.0374	CCCCACCCACGCCGGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	38	53	+	11.0909	4.31e-05	0.0374	CCCCACCCACGCCGGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	38	53	+	11.0909	4.31e-05	0.0374	CCCCACCCACGCCGGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	38	53	+	11.0909	4.31e-05	0.0374	CCCCACCCACGCCGGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	42	57	+	11.0909	4.31e-05	0.0374	GCCCGCCCCCCCCGCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	42	57	+	11.0909	4.31e-05	0.0374	GCCCGCCCCCCCCGCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	42	57	+	11.0909	4.31e-05	0.0374	GCCCGCCCCCCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	42	57	+	11.0909	4.31e-05	0.0374	GCCCGCCCCCCCCGCC
EGR4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	62	77	-	11.0909	4.31e-05	0.0374	CCCCACCCACGCCGGC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	17	27	-	12.2414	4.31e-05	0.895	TGCTGTTTCCT
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	17	27	-	12.2414	4.31e-05	0.895	TGCTGTTTCCT
Spz1	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	53	63	-	11.8364	4.31e-05	0.757	GGGGTTGCAGG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	7	18	-	11.5758	4.31e-05	0.109	TAGCCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	7	18	-	11.5758	4.31e-05	0.109	TAGCCTCCGCGG
HINFP	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	97	108	+	11.5758	4.31e-05	0.109	TAGCCTCCGCGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	8	19	-	11.5789	4.31e-05	0.0283	GCCCCGCCGCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	8	19	-	11.5789	4.31e-05	0.0283	GCCCCGCCGCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	8	19	-	11.5789	4.31e-05	0.0283	GCCCCGCCGCCC
SP8	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	96	107	+	11.5789	4.31e-05	0.0283	GCCCCGCCGCCC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	+	11.9091	4.31e-05	0.0893	AGCCTCCGGGGA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	-	11.9091	4.31e-05	0.0893	AGCCTCCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	-	11.9091	4.31e-05	0.0893	TGGCCTCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	-	11.9091	4.31e-05	0.0893	TGGCCTCGGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	-	11.9091	4.31e-05	0.0893	TGGCCTCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	-	11.9091	4.31e-05	0.0893	TGGCCTCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	-	11.9091	4.31e-05	0.0893	TGGCCTCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	-	11.9091	4.31e-05	0.0893	TGCCTGCCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	-	11.9091	4.31e-05	0.0893	TGCCTGCCGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	-	11.9091	4.31e-05	0.0893	TGCCTGCCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	-	11.9091	4.31e-05	0.0893	TGCCTGCCGGCA
ELF4	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	16	27	+	10.2459	4.31e-05	0.0972	CGCGCGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	50	61	+	10.2459	4.31e-05	0.0972	CGCGCGGAAGTG
ELF4	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	54	65	-	10.2459	4.31e-05	0.0972	CGCGCGGAAGTG
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	88	99	-	10.2459	4.31e-05	0.0972	CGCGCGGAAGTG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	19	30	+	11.7541	4.31e-05	0.41	TGTCGCGCCCAA
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	19	30	+	11.7541	4.31e-05	0.41	TGTCGCGCCCAA
E2F1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	41	52	+	11.7541	4.31e-05	0.41	TTTCGCGCCCCA
E2F1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	63	74	-	11.7541	4.31e-05	0.41	TTTCGCGCCCCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	10.0403	4.32e-05	0.0455	GTCACGCGAC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	10.0403	4.32e-05	0.0455	GTCGCGTGAC
Tcfl5	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	10.0403	4.32e-05	0.0455	GTCACGCGAC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	-	11.8367	4.32e-05	0.0857	AGCCTCGGGCCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	+	11.8367	4.32e-05	0.0857	TGCCGCCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	+	11.8367	4.32e-05	0.0857	TGCCGCCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	+	11.8367	4.32e-05	0.0857	TGCCGCCGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	+	11.8367	4.32e-05	0.0857	TGCCGCCGGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	-	11.1034	4.32e-05	0.0554	ACCCCCTGAGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	-	11.1034	4.32e-05	0.0554	CGCCGCTGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	-	11.1034	4.32e-05	0.0554	CGCCGCTGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	-	11.1034	4.32e-05	0.0554	TGCCCCAGAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	-	11.1034	4.32e-05	0.0554	TGCCCCAGAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	-	11.1034	4.32e-05	0.0554	CGCCGCTGGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	-	11.1034	4.32e-05	0.0554	CGCCGCTGGGGCT
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	+	11.1034	4.32e-05	0.0554	CGCCGCTGGGGCT
Zfx	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	11	24	-	11.7727	4.32e-05	0.0502	GGCGCGGCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	57	70	-	11.7727	4.32e-05	0.0502	CGGGCCCCGCCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	57	70	-	11.7727	4.32e-05	0.0502	CGGGCCCCGCCCTG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	12	25	+	11.2115	4.32e-05	0.0194	CGCCATCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	5	18	-	11.2115	4.32e-05	0.0194	AGCACGCCCCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	25	38	-	11.2115	4.32e-05	0.0194	CCTCCGCCCCTAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	25	38	-	11.2115	4.32e-05	0.0194	CCTCCGCCCCTAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	25	38	-	11.2115	4.32e-05	0.0194	CCTCCGCCCCTAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	25	38	-	11.2115	4.32e-05	0.0194	CCTCCGCCCCTAGC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	11	22	+	11.8065	4.32e-05	0.281	TCCACCACCGCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	11	22	+	11.8065	4.32e-05	0.281	TCCACCACCGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	12.1034	4.32e-05	0.103	CCCGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	12.1034	4.32e-05	0.103	CCCGGAAATG
Hnf4a	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	94	109	+	4.74545	4.32e-05	0.403	TGGGGCAGAGGCCAAG
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	21	36	-	4.74545	4.32e-05	0.403	TGGGGCAGAGGCCAAG
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	21	36	-	4.74545	4.32e-05	0.403	TGGGGCAGAGGCCAAG
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	7	18	+	2.11538	4.32e-05	0.882	TGAGAACTGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	7	18	+	2.11538	4.32e-05	0.882	TGAGAACTGTCA
POU4F2	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	38	53	+	8.38182	4.32e-05	1	CAGCATTTTTAATAAA
Stat4	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	47	60	+	12.1379	4.32e-05	0.255	ATTCCAGGAACCTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	23	40	-	-11.5395	4.32e-05	0.0404	GGGTGGAATGGGGGCAGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	20	34	+	10.4	4.32e-05	0.117	CGAGGGGAGGGAGCA
NR2C2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	25	39	+	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	25	39	+	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	25	39	+	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	25	39	+	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	25	39	+	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	76	90	-	10.4	4.32e-05	0.117	GGAGGGCAGGAGCCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	81	95	-	10.4	4.32e-05	0.117	CGAGGGGAGGGAGCA
TFEC	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	-	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	+	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	+	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	+	11.9756	4.32e-05	0.152	ATCATGTGAC
TFEC	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	+	11.9756	4.32e-05	0.152	ATCATGTGAC
SP4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	53	69	+	5.43636	4.32e-05	0.0243	TGGACCGCGCCCCCACG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	46	62	-	5.43636	4.32e-05	0.0243	TGGACCGCGCCCCCACG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	46	62	-	5.43636	4.32e-05	0.0243	TGGACCGCGCCCCCACG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	78	94	+	5.43636	4.32e-05	0.0243	TCACCCCCGCCCCTCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	78	94	+	5.43636	4.32e-05	0.0243	TCACCCCCGCCCCTCGC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	67	81	-	11.2545	4.32e-05	0.312	AGGAAGTGAATGTTC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	68	77	+	11.3853	4.32e-05	0.0533	CCACCCCCAA
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	9	18	-	11.3853	4.32e-05	0.0533	CCACCCCCAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	6	26	-	10.5102	4.32e-05	0.0155	GGAGGCCGGCAGGCGGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	6	26	-	10.5102	4.32e-05	0.0155	GGAGGCCGGCAGGCGGAGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	29	49	-	10.5102	4.32e-05	0.0155	GGGAGTGGGGAGAGCAGGGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	39	59	-	10.5102	4.32e-05	0.0155	AGAGGGGGAGCGCGGGGGAGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	54	74	-	10.5102	4.32e-05	0.0155	TGAGAAGAGGAAGTGGGAGAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	56	76	-	10.5102	4.32e-05	0.0155	GGAAGTGAAGGGGGAGGAGCC
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	62	82	-	10.5102	4.32e-05	0.0155	GGGGCAGGTGGGATTGGGAAA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	89	-	10.5102	4.32e-05	0.0155	CGGGGCGGGGGGGGGTGGGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	81	101	-	10.5102	4.32e-05	0.0155	GAGGGAGGTGTGCAGGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	89	109	-	10.5102	4.32e-05	0.0155	GGATGTGGGGGATGGTGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	6	26	+	10.5102	4.32e-05	0.0155	GGATGTGGGGGATGGTGGGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	46	+	10.5102	4.32e-05	0.0155	CGGGGCGGGGGGGGGTGGGAC
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	33	53	+	10.5102	4.32e-05	0.0155	GGGGCAGGTGGGATTGGGAAA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	39	59	+	10.5102	4.32e-05	0.0155	GGAAGTGAAGGGGGAGGAGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	41	61	+	10.5102	4.32e-05	0.0155	TGAGAAGAGGAAGTGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	41	61	+	10.5102	4.32e-05	0.0155	TGAGAAGAGGAAGTGGGAGAG
Myog	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	95	105	-	12.6327	4.32e-05	0.138	CACAGCTGCTT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	13	-	11.4796	4.32e-05	0.285	GGGCACGTGCC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	13	-	11.4796	4.32e-05	0.285	GGGCACGTGCC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	5	20	-	-6.90385	4.32e-05	0.329	CCGCCCCCCAGGAAGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	5	20	-	-6.90385	4.32e-05	0.329	CCGCCCCCCAGGAAGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	5	20	-	-6.90385	4.32e-05	0.329	CCGCCCCCCAGGAAGC
MAF::NFE2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	10	24	-	9.80328	4.32e-05	0.415	GTGACTCAGCCTGGG
MAF::NFE2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	10	24	-	9.80328	4.32e-05	0.415	GTGACTCAGCCTGGG
MAF::NFE2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	92	106	+	9.80328	4.32e-05	0.415	GTGACTCAGCCTGGG
Klf12	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	35	49	-	9.5082	4.32e-05	0.0553	GGCCCCACCCCGCCA
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	66	80	+	9.5082	4.32e-05	0.0553	GGCCCCACCCCGCCA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	95	105	-	11.9697	4.32e-05	0.275	CACCGCCATGG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	95	105	-	11.9697	4.32e-05	0.275	CACCGCCATGG
ETV1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.9636	4.32e-05	0.108	GCCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.9636	4.32e-05	0.108	GCCGGAAGCT
SPIC	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	71	84	+	11.6056	4.32e-05	0.219	AGGAACAGGAAGCA
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	24	39	+	3.2931	4.32e-05	0.308	CTCCCAGCATCCCTCC
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	24	39	+	3.2931	4.32e-05	0.308	CTCCCAGCATCCCTCC
ZNF143	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	76	91	-	3.2931	4.32e-05	0.308	CTCCCAGCATCCCTCC
Myb	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	33	42	-	12.5082	4.32e-05	0.89	CCAGCTGCCA
BHLHE23	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	96	107	+	11.0727	4.32e-05	1	GGGCATATGTCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	+	11.9455	4.33e-05	0.055	GCCCCTGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	+	11.9455	4.33e-05	0.055	GCCCCTGGGGCA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	13	30	+	10.2439	4.33e-05	0.138	ATGGCTCTCATTGCCTCA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	13	30	+	10.2439	4.33e-05	0.138	ATGGCTCTCATTGCCTCA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	52	66	+	9.27143	4.33e-05	0.106	TACCCCCTCCTGCCT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	13	27	+	11.2	4.33e-05	0.109	TGCCACCCGCAGTCG
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	66	76	+	11.541	4.33e-05	0.142	GACAGGAAATT
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	66	76	+	11.541	4.33e-05	0.142	GACAGGAAATT
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	66	76	+	11.541	4.33e-05	0.142	GACAGGAAATT
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	66	76	+	11.541	4.33e-05	0.142	GACAGGAAATT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	66	76	+	11.541	4.33e-05	0.142	GACAGGAAATT
Alx4	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	13	29	-	11.9091	4.33e-05	1	CGCTCTAATTGGCCTCG
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	82	96	+	11.9556	4.33e-05	0.964	CAGAGTCAGCAGCTG
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	82	96	+	11.9556	4.33e-05	0.964	CAGAGTCAGCAGCTG
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	24	33	-	12.197	4.33e-05	0.585	AACACATGTT
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	57	66	+	12.197	4.33e-05	0.585	AACACATGTT
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	+	11.7931	4.33e-05	0.124	ACCAGCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	+	11.7931	4.33e-05	0.124	ACCAGCTGCT
Nr5a2	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	34	48	-	11.1724	4.33e-05	0.385	GCGGGCAAGGCCACG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	68	81	+	6.9898	4.33e-05	0.365	TGGCGGAGCGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	68	81	+	6.9898	4.33e-05	0.365	TGGCGGAGCGCCAG
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	68	81	+	6.9898	4.33e-05	0.365	TGGCGGAGCGCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	68	81	+	6.9898	4.33e-05	0.365	TGGCGGAGCGCCAG
Esrra	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	2	12	-	8.94545	4.33e-05	0.862	CAGAAGGTCAT
Esrra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	104	114	+	8.94545	4.33e-05	0.862	CAGAAGGTCAT
Esrra	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	104	114	+	8.94545	4.33e-05	0.862	CAGAAGGTCAT
E2F4	WILDTYPE__Antisense.noflip.NA__chr6:16762107..16762221,+__739.1.0.0	61	71	-	11.9655	4.33e-05	0.0458	GCGCGCGAGGA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	18	28	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	40	50	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	50	60	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	50	60	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	85	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	101	+	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	13	23	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	13	23	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	13	23	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	13	23	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	14	24	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	65	75	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	70	80	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	70	80	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	70	80	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	103	113	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	103	113	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	103	113	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	103	113	-	11.9455	4.33e-05	0.0682	CGCCCCCGGCC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	94	107	-	6.96939	4.33e-05	0.0714	GGGTGGGAGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	94	107	-	6.96939	4.33e-05	0.0714	GGGTGGGAGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	94	107	-	6.96939	4.33e-05	0.0714	GGGTGGGAGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	94	107	-	6.96939	4.33e-05	0.0714	GGGTGGGAGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	94	107	-	6.96939	4.33e-05	0.0714	GGGTGGGAGAGGGG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	5	24	-	5.15596	4.33e-05	0.0551	ACCCCCATCCTCCCCTCCCC
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	46	65	+	5.15596	4.33e-05	0.0551	TCCCCCCACCCCACCCCCCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	-	12.0909	4.33e-05	0.0515	CCCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	-	12.0909	4.33e-05	0.0515	CCCCTCGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	66	76	+	12.0909	4.33e-05	0.0515	AGCCCGAAGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	66	76	+	12.0909	4.33e-05	0.0515	AGCCCGAAGCA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	62	73	+	11.1224	4.33e-05	0.167	GTTCTGGGGGAA
FOS	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	61	71	+	12.0851	4.33e-05	0.211	TGTGACTCAGG
FOS	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	64	74	-	12.0851	4.33e-05	0.211	TGTGACTCAGG
FOS	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	64	74	-	12.0851	4.33e-05	0.211	TGTGACTCAGG
FOS	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	77	87	+	12.0851	4.33e-05	0.211	GCTGACTCAGG
FOS	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	88	98	+	12.0851	4.33e-05	0.211	TGTGACTCAGG
FOS	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	83	93	-	12.0851	4.33e-05	0.211	TGTGACTCAGG
Myod1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	80	92	-	12.6122	4.33e-05	0.151	AACAGCTGCTGGT
ZNF410	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	18	34	-	-1.05455	4.33e-05	1	TCCGTCCCACAATGCTT
ZNF410	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	18	34	-	-1.05455	4.33e-05	1	TCCGTCCCACAATGCTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	29	43	+	7.7931	4.34e-05	0.037	CGCCGCTCCCGCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	29	43	+	7.7931	4.34e-05	0.037	CGCCGCTCCCGCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	37	51	-	7.7931	4.34e-05	0.037	GACCTCCCACCCATA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	37	51	-	7.7931	4.34e-05	0.037	GACCTCCCACCCATA
EGR3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	57	71	+	7.7931	4.34e-05	0.037	CCACGCCCTCCCATC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	44	58	-	7.7931	4.34e-05	0.037	CCACGCCCTCCCATC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	61	71	+	11.8727	4.34e-05	0.132	AGCCGGAAGCC
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	73	83	+	11.8727	4.34e-05	0.132	ATCAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	73	83	+	11.8727	4.34e-05	0.132	ATCAGGAAGTC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	37	48	+	11.5645	4.34e-05	1	TCATGCTAATTC
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	37	48	+	11.5645	4.34e-05	1	TCATGCTAATTC
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	46	57	-	11.5645	4.34e-05	1	TCATGCTAATTC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	46	57	-	11.5645	4.34e-05	1	TCATGCTAATTC
IRF1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	27	47	+	10.0484	4.34e-05	0.171	TACTACTTCCCTTTTCAAATT
IRF1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	50	70	+	10.0484	4.34e-05	0.171	GGTAACTTCCTGTTTCTGCCT
IRF1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	68	88	-	10.0484	4.34e-05	0.171	TACTACTTCCCTTTTCAAATT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	23	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	23	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	29	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	29	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	45	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	45	+	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	51	62	-	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	51	62	-	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	51	62	-	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	51	62	-	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	70	81	-	11.5658	4.34e-05	0.0283	GCCCCTCCCCGC
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	22	40	+	11.3871	4.34e-05	0.671	TGCCCGGTGGTGCCACCGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	22	40	+	11.3871	4.34e-05	0.671	TGCCCGGTGGTGCCACCGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	21	39	-	11.3871	4.34e-05	0.671	TGCCCGGTGGTGCCACCGT
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	21	39	-	11.3871	4.34e-05	0.671	TGCCCGGTGGTGCCACCGT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	81	92	+	10.2295	4.34e-05	0.0972	TTCCAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	81	92	+	10.2295	4.34e-05	0.0972	TTCCAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	101	112	+	10.2295	4.34e-05	0.0972	TTCCAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	101	112	+	10.2295	4.34e-05	0.0972	TTCCAGGAAGTT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	+	11.766	4.34e-05	0.191	GCTGACTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	+	11.766	4.34e-05	0.191	GCTGACTCAGC
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	20	29	-	11.4848	4.34e-05	1	AGCAACTGTC
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	20	29	-	11.4848	4.34e-05	1	AGCAACTGTC
MYF6	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	92	101	+	11.4848	4.34e-05	1	AGCAACTGTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	8	22	-	11.3448	4.34e-05	0.011	CTCCCTCCCTCTGGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	19	33	-	11.3448	4.34e-05	0.011	AGCCCTCCCCTTGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	19	33	-	11.3448	4.34e-05	0.011	AGCCCTCCCCTTGGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	19	33	-	11.3448	4.34e-05	0.011	AGCCCTCCCCTTGGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	19	33	-	11.3448	4.34e-05	0.011	AGCCCTCCCCTTGGG
SP2	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	56	70	-	11.3448	4.34e-05	0.011	CGCCCGCTCCCGGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	77	91	-	11.3448	4.34e-05	0.011	CTCCCTCCCTCTGGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	77	91	-	11.3448	4.34e-05	0.011	CTCCCTCCCTCTGGT
POU4F1	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	72	85	-	11.5748	4.34e-05	1	ATGAATAAATGAGG
Mecom	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	32	45	-	9.75281	4.34e-05	1	GAGACAGGATTGCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	15	31	-	10.7347	4.34e-05	0.338	AGGTCACGGACAGGCAT
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	77	93	+	10.7347	4.34e-05	0.338	AGGTCACGGACAGGCAT
XBP1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	29	42	-	10.7885	4.34e-05	0.508	ATGGTGACGTCATC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	11.9143	4.34e-05	0.0915	ACCGGAAACC
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	11.9143	4.34e-05	0.0915	ACCGGAAACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	85	101	+	5.41818	4.34e-05	0.0243	AGCGCCCCGCCCGCTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	85	101	+	5.41818	4.34e-05	0.0243	AGCGCCCCGCCCGCTCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	-	11.2295	4.35e-05	0.0641	TGCCCCAGAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	-	11.2295	4.35e-05	0.0641	TGCCCCAGAGGGC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	12.0727	4.35e-05	0.108	GCCGGAAGCC
PAX1	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	1	17	+	7.07273	4.35e-05	0.586	CGTCGTGGTTGGCTGGC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	5	18	-	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	28	41	+	11.7576	4.35e-05	0.0502	ATGGGCAGGGCCTG
Zfx	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	28	41	+	11.7576	4.35e-05	0.0502	ATGGGCAGGGCCTG
Zfx	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	28	41	+	11.7576	4.35e-05	0.0502	ATGGGCAGGGCCTG
Zfx	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	28	41	+	11.7576	4.35e-05	0.0502	ATGGGCAGGGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	20	33	-	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	44	57	-	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	58	71	+	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	58	71	+	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	58	71	+	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	74	87	-	11.7576	4.35e-05	0.0502	ATGGGCAGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	99	112	+	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	99	112	+	11.7576	4.35e-05	0.0502	CCGGCCCCGCCCTG
POU4F2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	77	92	-	8.36364	4.35e-05	1	CAGCATTATAAATGGC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	54	68	+	10.3857	4.35e-05	0.117	CGGGCGCAGAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	54	68	+	10.3857	4.35e-05	0.117	CGGGCGCAGAGGCCG
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	18	31	+	9.68182	4.35e-05	0.27	ATGACACGTGGGCG
HNF4G	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	57	-	11.5385	4.35e-05	0.335	AGAGGGTAAAGGTCT
HNF4G	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	58	72	+	11.5385	4.35e-05	0.335	AGAGGGTAAAGGTCT
IRF7	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	69	82	-	9.79032	4.35e-05	0.686	CCTAAAGAGAAAGC
TFAP2C	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	+	11.8265	4.35e-05	0.0857	CGCCGCGGGGCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	-	11.8265	4.35e-05	0.0857	CGCCGCGGGGCG
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	-	11.8265	4.35e-05	0.0857	TGGCCCCGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	+	11.8265	4.35e-05	0.0857	TGCCGGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	+	11.8265	4.35e-05	0.0857	TGCCGGGGGGCG
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	+	11.8265	4.35e-05	0.0857	TGGCCCCGGGCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	+	11.8265	4.35e-05	0.0857	CGCCGCGGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	-	11.8265	4.35e-05	0.0857	CGCCGCGGGGCG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	101	112	+	11.5606	4.35e-05	0.109	CGACGTCCGTGC
KLF14	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	32	45	+	9.93103	4.35e-05	0.0298	AGCCGCGCCCCATC
KLF14	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	70	83	-	9.93103	4.35e-05	0.0298	AGCCGCGCCCCATC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	19	29	-	11.7869	4.35e-05	0.0516	CAGGAAGTAGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	56	66	+	11.7869	4.35e-05	0.0516	CAGGAAGTAGC
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	49	59	-	11.7869	4.35e-05	0.0516	CAGGAAGTAGC
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	47	58	+	4.89655	4.35e-05	0.189	TGGTGCGTGCCG
HES7	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	82	93	-	4.89655	4.35e-05	0.189	GGGCACGGGCCT
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	19	34	-	-6.94231	4.35e-05	0.329	CCGCCCCCCAAGATGC
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	65	80	+	-6.94231	4.35e-05	0.329	CCGCCCCCCAAGATGC
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	46	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	46	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	68	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	68	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	81	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	81	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	81	+	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	81	+	13.2247	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	46	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	46	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	68	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	68	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	81	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	81	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	81	+	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	81	+	13.803	4.35e-05	1	GTAAACAT
FOXD1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	28	+	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	72	+	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	72	+	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	90	+	13.33	4.35e-05	1	GTAAACAA
FOXD1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	90	+	13.33	4.35e-05	1	GTAAACAA
VSX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	11.7244	4.35e-05	1	CTAATTAC
VSX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	11.7244	4.35e-05	1	CTAATTAC
VSX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	11.2441	4.35e-05	1	CTAATTAC
VSX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	11.2441	4.35e-05	1	CTAATTAC
Lhx8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	10.4727	4.35e-05	1	CTAATTAC
Lhx8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	10.4727	4.35e-05	1	CTAATTAC
FOXG1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	9	-	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	45	52	-	13.2247	4.35e-05	1	GTAAACAT
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	45	52	-	13.2247	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	9	-	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	45	52	-	13.803	4.35e-05	1	GTAAACAT
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	45	52	-	13.803	4.35e-05	1	GTAAACAT
PDX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.1887	4.35e-05	1	CTAATTAG
PDX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.1887	4.35e-05	1	CTAATTAG
PDX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.1887	4.35e-05	1	CTAATTAG
PDX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.1887	4.35e-05	1	CTAATTAG
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	7	14	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	7	14	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	32	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	32	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	55	62	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	57	64	-	13.33	4.35e-05	1	GTAAACAA
FOXD1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	94	-	13.33	4.35e-05	1	GTAAACAA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	40	53	+	6.94898	4.35e-05	0.0714	GGGGAGGAGGGGGG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	22	33	-	11.6857	4.35e-05	0.217	AGCGCCCCCCGC
ZBTB7A	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	37	48	-	11.6857	4.35e-05	0.217	GCCGCCCACCCT
ZBTB7A	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	37	48	-	11.6857	4.35e-05	0.217	GCCGCCCACCCT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	71	82	-	11.6857	4.35e-05	0.217	AGCGCCCCCCGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	71	82	-	11.6857	4.35e-05	0.217	AGCGCCCCCCGC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	71	82	-	11.6857	4.35e-05	0.217	AGCGCCCCCCGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	71	82	-	11.6857	4.35e-05	0.217	AGCGCCCCCCGC
ZBTB7A	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	68	79	+	11.6857	4.35e-05	0.217	GCCGCCCACCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	30	42	-	11.6066	4.35e-05	0.359	TAGCCTGTCACCC
SCRT1	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	94	108	-	8.70492	4.36e-05	0.713	CTTCAACATGTGTGC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	-	11.3934	4.36e-05	0.0586	GGCCCTCGAGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	+	11.3934	4.36e-05	0.0586	AGCCCGCCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	+	11.3934	4.36e-05	0.0586	AGCCCGCCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	+	11.3934	4.36e-05	0.0586	AGCCCGCCCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	+	11.3934	4.36e-05	0.0586	AGCCCGCCCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	+	11.3934	4.36e-05	0.0586	AGCCCGCCCGGCA
EGR1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	16	29	+	11.1923	4.36e-05	0.0194	GCGCCGCTGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	36	49	+	11.1923	4.36e-05	0.0194	TCCCCTCCCTCTCG
EGR1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	25	38	-	11.1923	4.36e-05	0.0194	CGCCCGCCGCCGTG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	31	44	-	11.1923	4.36e-05	0.0194	TCCCCTCCCTCTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	31	44	-	11.1923	4.36e-05	0.0194	TCCCCTCCCTCTCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	47	60	+	11.1923	4.36e-05	0.0194	GCACCACTCCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	71	84	+	11.1923	4.36e-05	0.0194	TCCCCTCCCTCTCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	93	106	+	11.1923	4.36e-05	0.0194	CTGCCGCCGCCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	83	96	-	11.1923	4.36e-05	0.0194	CTGCCGCCGCCGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	83	96	-	11.1923	4.36e-05	0.0194	CTGCCGCCGCCGGG
EGR1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	86	99	-	11.1923	4.36e-05	0.0194	GCGCCGCTGCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	15	-	12.0364	4.36e-05	0.0563	CTCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	15	-	12.0364	4.36e-05	0.0563	CTCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	56	-	12.0364	4.36e-05	0.0563	CTCCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	56	-	12.0364	4.36e-05	0.0563	CTCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	56	-	12.0364	4.36e-05	0.0563	CTCCTTCCGGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	64	74	+	12.0364	4.36e-05	0.0563	GTACTTCCGCT
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	98	107	-	11.7374	4.36e-05	0.297	TGGACATTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	98	107	-	11.7374	4.36e-05	0.297	TGGACATTCC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	41	53	+	9.5	4.36e-05	0.14	AGCCAGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	41	53	+	9.5	4.36e-05	0.14	AGCCAGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	69	81	+	9.5	4.36e-05	0.14	AGCCAGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	69	81	+	9.5	4.36e-05	0.14	AGCCAGGAAGTGA
Rarg	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	30	45	+	-0.306122	4.36e-05	0.877	GAGGGCAGGGGGTCGC
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	13	21	+	12.093	4.36e-05	0.448	TACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	13	21	+	12.093	4.36e-05	0.448	TACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	46	54	+	12.093	4.36e-05	0.448	TACAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	46	54	+	12.093	4.36e-05	0.448	TACAGGTGC
JUND	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	+	11.7447	4.36e-05	0.191	TCTGAGTCACC
JUND	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	+	11.7447	4.36e-05	0.191	TCTGAGTCACC
HEY1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	-	12.0545	4.36e-05	0.137	CCCACGTGCG
HEY1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	+	12.0545	4.36e-05	0.137	CCCACGTGCG
HEY1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	-	12.0545	4.36e-05	0.137	CCCACGTGCG
HEY1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	+	12.0545	4.36e-05	0.137	CCCACGTGCG
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	13	25	-	11.2222	4.36e-05	0.475	GACCGGCACATGC
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	13	25	-	11.2222	4.36e-05	0.475	GACCGGCACATGC
Hes2	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	38	50	+	11.2222	4.36e-05	0.475	GCCCGAAACGTGA
Hes2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	66	78	+	11.2222	4.36e-05	0.475	GAACGGCGCGTGC
SP1	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	10	20	+	11.8462	4.36e-05	0.0127	TCCCCTCCTCG
SP1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	14	24	+	11.8462	4.36e-05	0.0127	TCCCCTCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	23	33	+	11.8462	4.36e-05	0.0127	TTCCCTCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	16	26	-	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	20	30	-	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	36	46	+	11.8462	4.36e-05	0.0127	TCCCCTCCTCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	34	44	-	11.8462	4.36e-05	0.0127	GCCCCGCCTTG
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	47	57	+	11.8462	4.36e-05	0.0127	GCCCCGCCTTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	42	52	-	11.8462	4.36e-05	0.0127	GCCCCGCCTTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	73	83	+	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	73	83	+	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	65	75	-	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	82	92	+	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	85	95	+	11.8462	4.36e-05	0.0127	CTCCCACCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	82	92	-	11.8462	4.36e-05	0.0127	TTCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	96	106	+	11.8462	4.36e-05	0.0127	TTCCCTCCCCG
JUN	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	27	39	+	11.5306	4.36e-05	0.301	CTGCTGACGTCAT
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	27	39	+	11.5306	4.36e-05	0.301	CTCGTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	27	39	+	11.5306	4.36e-05	0.301	CTCGTGACGTCAT
JUN	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	75	87	+	11.5306	4.36e-05	0.301	CTGCTGACGTCAT
JUN	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	28	40	-	11.5306	4.36e-05	0.301	CTGCTGACGTCAT
JUN	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	44	56	-	11.5306	4.36e-05	0.301	AATATGACGTCAG
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	44	56	-	11.5306	4.36e-05	0.301	AATATGACGTCAG
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	44	56	-	11.5306	4.36e-05	0.301	AATATGACGTCAG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	72	84	-	11.5306	4.36e-05	0.301	TAACTGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	72	84	-	11.5306	4.36e-05	0.301	TAACTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	72	84	-	11.5306	4.36e-05	0.301	TAACTGACGTCAT
NKX2-8	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	10	18	-	11.5385	4.36e-05	1	ACACTTGAG
NKX2-8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	77	85	-	11.5385	4.36e-05	1	CCACTCGAG
NKX2-8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.1.0	77	85	-	11.5385	4.36e-05	1	CCACTCGAG
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	12.0806	4.36e-05	1	GGCATATGTT
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	12.0806	4.36e-05	1	GGCATATGTT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	-	11.9273	4.36e-05	0.055	TGCCCCAGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	-	11.9273	4.36e-05	0.055	TGCCCCAGGGGC
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	46	57	+	11.9273	4.36e-05	0.055	AGCCCTGAGCCA
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	58	69	-	11.9273	4.36e-05	0.055	AGCCCTGAGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	85	96	-	11.9273	4.36e-05	0.055	CGCCCTGGGCCT
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	25	34	+	12.1573	4.36e-05	0.871	GTGGAGTGAT
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	7	19	+	10.7571	4.36e-05	0.729	CCTCCAGGTGTGC
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	96	108	-	10.7571	4.36e-05	0.729	CCTCCAGGTGTGC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	96	108	-	10.7571	4.36e-05	0.729	CCTCCAGGTGTGC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	96	108	-	10.7571	4.36e-05	0.729	CCTCCAGGTGTGC
ZBTB18	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	96	108	-	10.7571	4.36e-05	0.729	CCTCCAGGTGTGC
NFATC3	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	33	42	-	11.3232	4.36e-05	0.908	ATTTTCCGCC
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	73	82	+	11.3232	4.36e-05	0.908	ATTTTCCGCC
NFATC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	73	82	+	11.3232	4.36e-05	0.908	ATTTTCCGCC
NFATC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	73	82	+	11.3232	4.36e-05	0.908	ATTTTCCGCC
NFATC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	73	82	+	11.3232	4.36e-05	0.908	ATTTTCCGCC
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	5	20	+	3.25862	4.36e-05	0.308	TTCCCTGGGTGCACAG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	5	20	+	3.25862	4.36e-05	0.308	TTCCCTGGGTGCACAG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	25	36	-	11.8909	4.36e-05	0.0893	TGCCCTCAGCCG
MAFF	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	11	28	+	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	21	38	+	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	21	38	+	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
MAFF	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	77	94	-	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	87	104	-	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	87	104	-	11.6667	4.36e-05	0.965	GTAGTATCAGCAGTAACA
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	26	40	-	11.2364	4.36e-05	0.312	TGAAAGCAAAAGTAA
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	38	52	-	11.2364	4.36e-05	0.312	TGAAAGCAAAAGTAA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	38	52	-	11.2364	4.36e-05	0.312	TGAAAGCAAAAGTAA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	39	55	-	5.4	4.36e-05	0.0243	ACCTCCCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	39	55	-	5.4	4.36e-05	0.0243	ACCTCCCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	39	55	-	5.4	4.36e-05	0.0243	ACCTCCCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	39	55	-	5.4	4.36e-05	0.0243	ACCTCCCCGCCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	39	55	-	5.4	4.36e-05	0.0243	ACCTCCCCGCCCCCACC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	44	60	-	5.4	4.36e-05	0.0243	CCCTCCCCGCCCCTTTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	44	60	-	5.4	4.36e-05	0.0243	CCCTCCCCGCCCCTTTG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	41	55	+	10.5909	4.36e-05	0.298	GTGGTTTCATTATCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	41	55	+	10.5909	4.36e-05	0.298	GTGGTTTCATTATCT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	78	98	+	10.0323	4.37e-05	0.171	ATCTGGTTCCTGTTTAACTTT
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	49	65	+	11.0921	4.37e-05	0.614	GCGCGTGCGCACGGGGA
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	50	66	-	11.0921	4.37e-05	0.614	GCGCGTGCGCACGGGGA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	17	27	+	11.9273	4.37e-05	0.18	GGTGACTAATG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	81	91	-	11.9273	4.37e-05	0.18	GGTGACTAATG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	20	40	-	10.4898	4.37e-05	0.0156	GGGGGGGGGGGGTGGGGTGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	50	70	-	10.4898	4.37e-05	0.0156	GGTAAAAGAAAAGGAGGAAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	51	71	-	10.4898	4.37e-05	0.0156	GGAAGGGGAAGGGCAGGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	59	79	-	10.4898	4.37e-05	0.0156	GAAGGAGGCGCCCGATGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	59	79	-	10.4898	4.37e-05	0.0156	GAAGGAGGCGCCCGATGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	71	91	-	10.4898	4.37e-05	0.0156	AAAGCAGAATGCGGGGGGAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	71	91	-	10.4898	4.37e-05	0.0156	AAAGCAGAATGCGGGGGGAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	36	56	+	10.4898	4.37e-05	0.0156	GGGAACGGGGGAGAAGAAGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	44	64	+	10.4898	4.37e-05	0.0156	GGAAGGGGAAGGGCAGGGAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	60	80	+	10.4898	4.37e-05	0.0156	AAGGCAAGGCGAAGGGGTGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	79	99	+	10.4898	4.37e-05	0.0156	GAAGCAGAGGGGACGATGAGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	50	63	-	6.93878	4.37e-05	0.0714	GGGGGGGGCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	50	63	-	6.93878	4.37e-05	0.0714	GGGGGGGGCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	50	63	-	6.93878	4.37e-05	0.0714	GGGGGGGGCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	50	63	-	6.93878	4.37e-05	0.0714	GGGGGGGGCGGGGG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	25	36	-	11.5526	4.37e-05	0.0284	GCCCCACCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	25	36	-	11.5526	4.37e-05	0.0284	GCCCCACCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	25	36	-	11.5526	4.37e-05	0.0284	GCCCCACCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	25	36	-	11.5526	4.37e-05	0.0284	GCCCCACCCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	54	65	-	11.5526	4.37e-05	0.0284	GCCCCACCCCTC
FOXB1	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	33	43	-	11.8077	4.37e-05	1	TGAGTCAACAT
RXRG	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	32	+	3.42553	4.37e-05	0.48	GGGATTAAAGGTCT
RXRG	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	32	+	3.42553	4.37e-05	0.48	GGGATTAAAGGTCT
RXRG	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	83	96	-	3.42553	4.37e-05	0.48	GGGATTAAAGGTCT
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	40	51	+	10.2545	4.37e-05	0.102	ACAGCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	75	-	10.2545	4.37e-05	0.102	ACAGCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	75	-	10.2545	4.37e-05	0.102	ACAGCGGAAGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	26	39	-	7.65957	4.37e-05	0.0994	TCCCTCCTGCAGAG
Hes1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	6	15	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	13	22	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	6	15	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	19	28	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	19	28	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	13	22	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	27	36	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	27	36	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	19	28	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	19	28	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	27	36	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	27	36	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	41	50	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	45	54	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	41	50	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	45	54	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	61	70	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	61	70	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	61	70	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	63	72	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	68	77	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	61	70	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	61	70	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	61	70	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	63	72	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	68	77	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	79	88	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	87	96	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	87	96	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	87	96	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	87	96	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	88	97	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	79	88	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	93	102	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	87	96	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	87	96	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	87	96	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	87	96	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	88	97	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	100	109	+	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	93	102	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	10.2867	4.37e-05	0.0848	GCCACGTGGC
Hes1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	100	109	-	10.2867	4.37e-05	0.0848	GGCGCGCGCC
MTF1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	68	81	+	7.4878	4.37e-05	0.5	TGCACACACGGCAG
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	84	95	-	11.5345	4.37e-05	1	AAAACAGGTATG
GRHL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	84	95	-	11.5345	4.37e-05	1	AAAACAGGTATG
Nr2f6	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	17	30	-	9.66667	4.37e-05	0.332	GAGGTCAGAGCTCG
Nr2f6	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	85	98	+	9.66667	4.37e-05	0.332	GAGGTCAGAGCTCG
FOXP1	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	12	26	-	11.8451	4.37e-05	0.341	CAACAGAAAACAGGG
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	64	78	+	7.33028	4.37e-05	1	GGGTCGAAGGGCACG
RXRA::VDR	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	64	78	+	7.33028	4.37e-05	1	GGGTCGAAGGGCACG
E2F4	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	7	17	-	11.9483	4.37e-05	0.0458	GCGCGGGAATT
E2F4	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	36	46	-	11.9483	4.37e-05	0.0458	CGGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	50	60	-	11.9483	4.37e-05	0.0458	CGGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	50	60	-	11.9483	4.37e-05	0.0458	CGGCGCGAGGC
E2F4	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	69	79	+	11.9483	4.37e-05	0.0458	CGGCGCGAGGC
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	95	105	-	12.2449	4.37e-05	0.788	ATTTCAAAACA
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	95	105	-	12.2449	4.37e-05	0.788	ATTTCAAAACA
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	18	35	+	9.69231	4.37e-05	0.649	TACATGTCCCAGCACACC
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	18	35	+	9.69231	4.37e-05	0.649	TACATGTCCCAGCACACC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	12.1731	4.37e-05	0.131	GCCACGTGCT
TFEB	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	12.1731	4.37e-05	0.131	GCCACGTGCT
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	12.1731	4.37e-05	0.131	GCCACGTGCT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	12.1731	4.37e-05	0.131	GCCACGTGCT
ZIC4	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	27	41	+	11.1818	4.37e-05	0.109	CCCCTCCTGCCGGGC
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	64	81	+	10.2195	4.37e-05	0.138	CGCCCCGCCATTGGTCCG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	64	81	+	10.2195	4.37e-05	0.138	CGCCCCGCCATTGGTCCG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	30	41	+	10.2131	4.37e-05	0.0972	CACCCGGAACTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	30	41	+	10.2131	4.37e-05	0.0972	CACCCGGAACTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	30	41	+	10.2131	4.37e-05	0.0972	CACCCGGAACTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	30	41	+	10.2131	4.37e-05	0.0972	CACCCGGAACTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	47	58	+	10.2131	4.37e-05	0.0972	GGCCCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	47	58	+	10.2131	4.37e-05	0.0972	GGCCCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	47	58	+	10.2131	4.37e-05	0.0972	GGCCCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	47	58	+	10.2131	4.37e-05	0.0972	GGCCCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	60	71	+	10.2131	4.37e-05	0.0972	GGCCCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	72	83	+	10.2131	4.37e-05	0.0972	GCGCCGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	72	83	+	10.2131	4.37e-05	0.0972	GCGCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	72	83	+	10.2131	4.37e-05	0.0972	GCGCCGGAAGTC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	38	+	12.6327	4.37e-05	0.158	GACAGGTGCGC
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	38	+	12.6327	4.37e-05	0.158	GACAGGTGCGC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	38	+	12.6327	4.37e-05	0.158	GACAGGTGCGC
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	38	+	12.6327	4.37e-05	0.158	GACAGGTGCGC
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	38	+	12.6327	4.37e-05	0.158	GACAGGTGCGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	63	73	-	11.7705	4.37e-05	0.0517	GCGGAAGTACT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	61	78	+	-11.5789	4.37e-05	0.0408	GCGGGGAAGGAAGCCCGG
ETV5	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	11.6364	4.37e-05	0.0987	CCCGGATGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.9091	4.37e-05	0.108	GCCGGAAGCC
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	97	110	+	11.3103	4.37e-05	1	ATTTTGCAAATGAC
NR3C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	+	6.6383	4.37e-05	0.952	GTGTACTGGATGTTCTC
NR3C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	+	6.6383	4.37e-05	0.952	GTGTACTGGATGTTCTC
NR3C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	+	6.6383	4.37e-05	0.952	GTGTACTGGATGTTCTC
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	2	11	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	2	11	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	8	17	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	8	17	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	40	49	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	41	50	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	41	50	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	41	50	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	41	50	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	47	56	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	48	57	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	60	69	+	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	63	72	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	73	82	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	97	106	+	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	9	18	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	31	40	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	33	42	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	46	55	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	46	55	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	67	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	68	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	70	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	74	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	66	75	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	66	75	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	98	107	-	12.0769	4.37e-05	0.0907	GCCGGAAGCG
ETV6	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	104	113	-	12.0769	4.37e-05	0.0907	GTCGGAAGTG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	+	11.8163	4.37e-05	0.0857	CGGCCCGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	+	11.8163	4.37e-05	0.0857	CGGCCCGGGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	-	11.8163	4.37e-05	0.0857	CGGCCCGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	-	11.8163	4.37e-05	0.0857	TGGCCGGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	-	11.8163	4.37e-05	0.0857	CGCCTGGAGGCT
NRF1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	36	46	+	11.0909	4.38e-05	0.0168	ACGGGTGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	58	68	-	11.0909	4.38e-05	0.0168	GCCCACGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	97	107	-	11.0909	4.38e-05	0.0168	GCCCACGCGCG
SP2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	9	23	+	11.3276	4.38e-05	0.0111	CCCCCGCTCCGCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	29	43	+	11.3276	4.38e-05	0.0111	CCCCCTCCCTCCCAA
SP2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	30	44	+	11.3276	4.38e-05	0.0111	CCACCTCCCCCGCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	3	17	-	11.3276	4.38e-05	0.0111	TTCCCACCCCAGCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	71	85	-	11.3276	4.38e-05	0.0111	CCACCTCCCCCGCCG
SCRT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	93	107	-	8.68852	4.38e-05	0.713	AAGCCACAAGTTATT
SCRT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	93	107	-	8.68852	4.38e-05	0.713	AAGCCACAAGTTATT
SCRT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	93	107	-	8.68852	4.38e-05	0.713	AAGCCACAAGTTATT
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	93	107	-	8.68852	4.38e-05	0.713	AAGCCACAAGTTATT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	-	12.0727	4.38e-05	0.0517	CGCCGGCGGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	-	12.0727	4.38e-05	0.0517	CGCCGGCGGCG
Zfx	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	3	16	+	11.7424	4.38e-05	0.0504	CCAATCCCGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	99	112	-	11.7424	4.38e-05	0.0504	CCAATCCCGGCCTG
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	52	65	-	9.77419	4.38e-05	0.686	CTGAAAGCAAAAGA
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	59	68	+	12.2317	4.38e-05	0.472	GTCACGTCAT
E2F6	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	81	91	+	12.2241	4.38e-05	0.0549	GAGAGGGAAAA
GLIS3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	5	18	+	5.28788	4.38e-05	0.379	CGCCTCCCGCAACG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	7	20	+	5.28788	4.38e-05	0.379	CGCCTCCCGCAACG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	95	108	-	5.28788	4.38e-05	0.379	CGCCTCCCGCAACG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	97	110	-	5.28788	4.38e-05	0.379	CGCCTCCCGCAACG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	46	59	+	6.92857	4.38e-05	0.0714	GAGGGCAGCTGGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	52	62	-	11.931	4.38e-05	0.0458	GGGCGGCAAGG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	5	23	+	11.3065	4.38e-05	0.147	CGGCGCGGCGGTGCAGGGA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	33	51	+	11.3065	4.38e-05	0.147	CGGCGCGGCGGTGCAGGGA
PAX5	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	36	54	-	11.3065	4.38e-05	0.147	GGGCGCGGCGAGGCTGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	61	79	+	11.3065	4.38e-05	0.147	GGGCGCGGCGAGGCTGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	61	79	+	11.3065	4.38e-05	0.147	GGGCGCGGCGAGGCTGGGC
Mecom	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	56	69	+	9.73034	4.38e-05	1	AGGACAGGACAAGC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	81	101	-	6.30612	4.38e-05	0.212	CTTGGGACGCCGGAGAGTGCA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	81	101	-	6.30612	4.38e-05	0.212	CTTGGGACGCCGGAGAGTGCA
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	81	101	-	6.30612	4.38e-05	0.212	CTTGGGACGCCGGAGAGTGCA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	81	101	-	6.30612	4.38e-05	0.212	CTTGGGACGCCGGAGAGTGCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	11	24	+	9.91379	4.38e-05	0.0299	AGCCTCGCCCATCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	15	28	+	9.91379	4.38e-05	0.0299	CGACACGCCTCCAG
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	19	32	-	9.91379	4.38e-05	0.0299	GGACCCCCCCCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	83	96	+	9.91379	4.38e-05	0.0299	GGACCCCCCCCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	42	56	-	7.75862	4.38e-05	0.0373	CCCCTCCCCGGCACT
Neurog1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	10.6374	4.38e-05	1	AGCATATGTT
Neurog1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	10.6374	4.38e-05	1	AGCATATGTT
Neurog1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	10.6374	4.38e-05	1	AGCATATGTT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	1	11	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	1	11	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	7	17	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	7	17	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	13	23	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	14	24	+	11.7154	4.38e-05	0.0184	CACCCACCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	15	25	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	15	25	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	28	38	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	28	38	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	31	41	+	11.7154	4.38e-05	0.0184	CACCCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	31	41	+	11.7154	4.38e-05	0.0184	CACCCACCCAC
SP3	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	51	61	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	70	80	+	11.7154	4.38e-05	0.0184	TCCCCGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	88	98	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	88	98	+	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	6	16	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	6	16	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	6	16	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	6	16	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	6	16	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	32	42	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	35	45	-	11.7154	4.38e-05	0.0184	TCCCCGCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	54	64	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	63	73	-	11.7154	4.38e-05	0.0184	TCCCCGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	66	76	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	66	76	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	74	84	-	11.7154	4.38e-05	0.0184	GCCCCGCCCGC
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	28	38	+	11.8966	4.38e-05	0.241	GTCTGTGGGTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	72	83	+	11.1639	4.38e-05	0.121	AATCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	72	83	+	11.1639	4.38e-05	0.121	AATCAGGAAGTC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	80	+	11.377	4.38e-05	0.0586	GGCCGGGGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	80	+	11.377	4.38e-05	0.0586	GGCCGGGGGGGCG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	4	13	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	9	18	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	9	18	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	6	15	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	16	25	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	16	25	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	16	25	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	16	25	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	22	31	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	22	31	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	22	31	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	22	31	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	22	31	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	25	34	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	27	36	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	30	39	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	47	56	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	57	66	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	49	58	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	49	58	-	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	59	68	+	11.4024	4.38e-05	0.488	CCAATCAGAG
Gfi1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	79	88	+	11.4024	4.38e-05	0.488	CCAATCAGAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	33	43	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	33	43	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	24	34	-	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	37	47	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	51	61	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	51	61	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	53	63	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	52	62	-	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	68	78	-	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	81	91	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	81	91	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	82	92	+	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	98	108	-	11.8269	4.38e-05	0.0127	CTTCCGCCTCC
GLIS1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	24	39	-	-6.98077	4.39e-05	0.329	CCTCCCCCCGCGTCCC
GLIS1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	76	91	+	-6.98077	4.39e-05	0.329	CCTCCCCCCGCGTCCC
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	11	4.39e-05	1	GACATATGCC
HES5	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	6	17	+	4.44828	4.39e-05	0.296	GCCCACGTGCCA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	11.8103	4.39e-05	0.116	GCCGGATGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	11.8103	4.39e-05	0.116	GCCGGATGTT
Sox1	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	6	20	-	5.32759	4.39e-05	1	AGCAATATGATTGGG
SP4	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	24	40	-	5.38182	4.39e-05	0.0244	CCAACCCCGCCGCCCCA
SP4	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	75	91	+	5.38182	4.39e-05	0.0244	CCAACCCCGCCGCCCCA
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	47	58	-	9.98182	4.39e-05	0.189	GATGACGCCATC
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	47	58	-	9.98182	4.39e-05	0.189	GATGACGCCATC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	+	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	+	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	-	11.9273	4.39e-05	0.0682	AGCCTGGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	-	11.9273	4.39e-05	0.0682	CGCCGCGGGCT
RFX2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	+	7.27143	4.39e-05	0.269	GGTTACCATGGTCGCG
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	38	52	-	11.4808	4.39e-05	0.426	AGGTCGCCCCGCCCC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	38	52	-	11.4808	4.39e-05	0.426	AGGTCGCCCCGCCCC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	38	52	-	11.4808	4.39e-05	0.426	AGGTCGCCCCGCCCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	38	52	-	11.4808	4.39e-05	0.426	AGGTCGCCCCGCCCC
CEBPG	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	+	11.102	4.39e-05	0.776	ATTGTGCAAC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	12.5455	4.39e-05	0.281	CGCACGTGGC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	12.5455	4.39e-05	0.281	CGCACGTGGC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	51	61	+	11.8909	4.39e-05	0.18	TCTGAGTCATC
FOSL1	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	54	64	-	11.8909	4.39e-05	0.18	TCTGAGTCATC
HINFP	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	11	22	-	11.5455	4.39e-05	0.109	CCGCCTCCGCTG
HINFP	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	97	108	+	11.5455	4.39e-05	0.109	CCGCCTCCGCTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	46	56	+	11.2909	4.39e-05	0.225	AACCGGAACTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	46	56	+	11.2909	4.39e-05	0.225	AACCGGAACTG
Gabpa	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	36	46	-	11.7541	4.39e-05	0.0518	GCGGAAGTTGT
Gabpa	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	69	79	+	11.7541	4.39e-05	0.0518	GCGGAAGTTGT
TFE3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	11.5714	4.39e-05	0.109	AGCACGTGGC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	11.5714	4.39e-05	0.109	AGCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	11.5714	4.39e-05	0.109	AGCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	11.5714	4.39e-05	0.109	AGCACGTGGC
TFE3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	11.5714	4.39e-05	0.109	ATCACGTGTC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	5	16	+	11.9091	4.39e-05	0.055	CGCCCGGAGCCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	17	28	+	11.9091	4.39e-05	0.055	GCCCCCAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	+	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	+	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	38	-	11.9091	4.39e-05	0.055	GCCCCCAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	-	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	-	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	+	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	-	11.9091	4.39e-05	0.055	CGCCCAGAGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	73	84	-	11.9091	4.39e-05	0.055	CGCCCGGAGCCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	18	31	-	11.1731	4.39e-05	0.0195	GTTCCGCCCACTGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	18	31	-	11.1731	4.39e-05	0.0195	GTTCCGCCCACTGT
EGR1	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	20	33	-	11.1731	4.39e-05	0.0195	CTTCCTCCGACGCA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	35	48	+	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	35	48	+	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	43	56	+	11.1731	4.39e-05	0.0195	CCTCCTCCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	43	56	+	11.1731	4.39e-05	0.0195	CCTCCTCCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	30	43	-	11.1731	4.39e-05	0.0195	CCTCCTCCCCTTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	30	43	-	11.1731	4.39e-05	0.0195	CCTCCTCCCCTTCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	36	49	-	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	36	49	-	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	44	57	-	11.1731	4.39e-05	0.0195	CACACACCCACTCG
EGR1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	66	79	+	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	67	80	-	11.1731	4.39e-05	0.0195	GCACTTCCCCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	82	95	+	11.1731	4.39e-05	0.0195	CTTCCTCCGACGCA
Crem	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	50	59	-	12.4426	4.39e-05	0.266	AATTACGTAA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	66	75	-	12.4426	4.39e-05	0.266	AATTACGTAA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	66	75	-	12.4426	4.39e-05	0.266	AATTACGTAA
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	11.9634	4.39e-05	0.153	CGCACGTGAT
TFEC	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	11.9634	4.39e-05	0.153	CGCACGTGAT
Hoxd3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	5	20	-	11.7662	4.39e-05	1	TTGGCTTAATTGCTCC
Hoxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	5	20	-	11.7662	4.39e-05	1	TTGGCTTAATTGCTCC
Hoxd3	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	42	57	+	11.7662	4.39e-05	1	TTTTGTTAATTAAATG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	18	30	-	10.7377	4.39e-05	0.532	TTCTGATGAAATC
ATF4	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	85	97	+	10.7377	4.39e-05	0.532	TTCTGATGAAATC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	2	12	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	14	24	+	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	15	25	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	7	17	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	13	23	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	13	23	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	24	34	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	24	34	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	18	28	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	18	28	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	18	28	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	30	40	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	40	50	-	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	53	63	+	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	53	63	+	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	58	68	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	58	68	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	56	66	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	56	66	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	56	66	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	56	66	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	58	68	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	58	68	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	87	97	+	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	98	108	+	10.4655	4.39e-05	0.0799	CCGCCCGCGCC
EGR2	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	91	101	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	92	102	-	10.4655	4.39e-05	0.0799	CCGCCGCCGCA
RREB1	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	2	21	-	5.11009	4.4e-05	0.0555	CTCCCCCACAACTCCTCACA
RREB1	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	94	113	+	5.11009	4.4e-05	0.0555	CTCCCCCACAACTCCTCACA
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	58	71	+	9.31148	4.4e-05	0.185	CCCCCCCCGTGCCG
Hoxa9	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	51	61	+	11.6842	4.4e-05	1	CCCCTAAATCA
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	54	64	-	11.6842	4.4e-05	1	CCCCTAAATCA
Hoxa9	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	54	64	-	11.6842	4.4e-05	1	CCCCTAAATCA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	68	81	-	12.1034	4.4e-05	0.257	GTGCTGGGAACGGG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	68	81	-	12.1034	4.4e-05	0.257	GTGCTGGGAACGGG
NFKB2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	40	52	+	9.51515	4.4e-05	0.258	CGGGGTACTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	63	75	-	9.51515	4.4e-05	0.258	CGGGGTACTCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	63	75	-	9.51515	4.4e-05	0.258	CGGGGTACTCCCA
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	20	34	-	11.2097	4.4e-05	1	CATGCTTATGCCAAT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	38	52	+	11.2097	4.4e-05	1	CATGCTTATGCCAAT
SPIC	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	95	108	+	11.5775	4.4e-05	0.22	GGGAAGAGGAAGGA
SPIC	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	7	20	-	11.5775	4.4e-05	0.22	GGGAAGAGGAAGGA
EGR4	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	7	22	-	11.0545	4.4e-05	0.0374	CCCCACCCCCGCCCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	28	43	+	11.0545	4.4e-05	0.0374	TCACGCCCACCGCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	32	47	-	11.0545	4.4e-05	0.0374	GACCGCTCACCCAATG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	32	47	-	11.0545	4.4e-05	0.0374	GACCGCTCACCCAATG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	32	47	-	11.0545	4.4e-05	0.0374	GACCGCTCACCCAATG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	32	47	-	11.0545	4.4e-05	0.0374	GACCGCTCACCCAATG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	32	47	-	11.0545	4.4e-05	0.0374	GACCGCTCACCCAATG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	30	44	-	11.1818	4.4e-05	0.0984	CCCCCGCGGGCCCGG
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	71	85	+	11.1818	4.4e-05	0.0984	CCCCCGCGGGCCCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	82	96	+	11.1818	4.4e-05	0.0984	TCCTCGCGGCGCCCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	82	96	+	11.1818	4.4e-05	0.0984	TCCTCGCGGCGCCCG
GLI2	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	19	30	+	11.2069	4.4e-05	0.33	CCGCCCACCCGG
GLI2	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	85	96	-	11.2069	4.4e-05	0.33	CCGCCCACCCGG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	1	14	-	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	1	14	-	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	1	14	-	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	1	14	-	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
ATF7	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	40	53	-	8.67143	4.4e-05	0.151	CAGTGACGTCGCCA
ATF7	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	62	75	+	8.67143	4.4e-05	0.151	CAGTGACGTCGCCA
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	72	85	+	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	72	85	+	8.67143	4.4e-05	0.151	ATCTGACGTCAGCG
Hoxa11	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	50	61	-	11.9516	4.4e-05	1	CCTCGTAAAAGC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	83	98	-	-0.346939	4.4e-05	0.877	GCAGTCAAAAGTCCAC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	3	16	-	7.6383	4.4e-05	0.0994	GGCCTCCCGCTCCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	3	16	-	7.6383	4.4e-05	0.0994	GGCCTCCCGCTCCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	3	16	-	7.6383	4.4e-05	0.0994	GGCCTCCCGCTCCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	3	16	-	7.6383	4.4e-05	0.0994	GGCCTCCCGCTCCG
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	55	69	-	11.1379	4.4e-05	0.385	CAGTCCAGGGTCAGA
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	55	69	-	11.1379	4.4e-05	0.385	CAGTCCAGGGTCAGA
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	55	69	-	11.1379	4.4e-05	0.385	CAGTCCAGGGTCAGA
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	55	69	-	11.1379	4.4e-05	0.385	CAGTCCAGGGTCAGA
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	85	98	-	9.65152	4.4e-05	0.332	GGGGTCCAAGCTCA
KLF16	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	53	63	+	11.3621	4.4e-05	0.0171	TCCGCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	20	30	-	11.3621	4.4e-05	0.0171	CCCACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	20	30	-	11.3621	4.4e-05	0.0171	CCCACACCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	20	30	-	11.3621	4.4e-05	0.0171	CCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	20	30	-	11.3621	4.4e-05	0.0171	CCCACACCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	52	62	-	11.3621	4.4e-05	0.0171	TCCGCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	60	70	-	11.3621	4.4e-05	0.0171	TCCGCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	81	91	-	11.3621	4.4e-05	0.0171	TCCGCGCCCCC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	82	92	-	12.0545	4.4e-05	0.174	TTGTGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	82	92	-	12.0545	4.4e-05	0.174	TTGTGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	82	92	-	12.0545	4.4e-05	0.174	TTGTGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	82	92	-	12.0545	4.4e-05	0.174	TTGTGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	83	93	-	12.0545	4.4e-05	0.174	TTATGAGTCAT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	13	22	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	13	22	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	22	31	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	27	36	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	33	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	43	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	43	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	43	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	43	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	35	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	36	45	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	41	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	43	52	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	43	52	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	43	52	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	43	52	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	43	52	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	49	58	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	63	72	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	63	72	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	63	72	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	63	72	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	63	72	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	66	75	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	66	75	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	72	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	72	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	72	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	74	83	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	89	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	81	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	82	91	+	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	88	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	88	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	88	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	88	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	88	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	93	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
ERF	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	102	-	11.8857	4.4e-05	0.0915	CCCGGAAGTG
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	9	23	+	11.831	4.4e-05	0.341	AGGAAGTAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	9	23	+	11.831	4.4e-05	0.341	AGGAAGTAAAAAAAA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	37	46	-	12.0816	4.4e-05	0.0184	GCTACGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	37	46	-	12.0816	4.4e-05	0.0184	GCTACGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	5	14	+	12.0816	4.4e-05	0.0184	TTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	5	14	+	12.0816	4.4e-05	0.0184	TTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	5	14	+	12.0816	4.4e-05	0.0184	TTCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	37	+	12.0816	4.4e-05	0.0184	TTCCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	53	62	+	12.0816	4.4e-05	0.0184	TTCCCGCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	29	40	+	11.5395	4.4e-05	0.0284	GCCCTGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	33	44	+	11.5395	4.4e-05	0.0284	GCACCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	33	44	+	11.5395	4.4e-05	0.0284	GCACCTCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	30	41	-	11.5395	4.4e-05	0.0284	GCACCTCCCCCC
SP8	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	30	41	-	11.5395	4.4e-05	0.0284	GCACCGCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	54	+	11.5395	4.4e-05	0.0284	GCACCGCCCCTC
SP8	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	37	48	-	11.5395	4.4e-05	0.0284	GCCCTGCCCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	63	74	+	11.5395	4.4e-05	0.0284	GCACCTCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	61	72	-	11.5395	4.4e-05	0.0284	GCACCGCCCCTC
FOXF2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	53	66	+	12.0111	4.4e-05	1	CGCGGGTAAACACC
FOXF2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	49	62	-	12.0111	4.4e-05	1	CGCGGGTAAACACC
FOXF2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	77	90	-	12.0111	4.4e-05	1	CGCGGGTAAACACC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	14	-	11.7759	4.4e-05	0.125	CACACCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	14	-	11.7759	4.4e-05	0.125	CACACCTGCT
MEIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	22	29	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	22	29	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	31	38	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	31	38	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	31	38	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	31	38	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	31	38	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.0.0	47	54	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.0	47	54	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	57	64	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	83	90	-	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	1	8	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	15	22	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	15	22	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	15	22	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	15	22	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	43	50	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	60	67	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	102	109	+	11.9016	4.4e-05	0.972	ATGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	102	109	+	11.9016	4.4e-05	0.972	ATGACAGC
ZIC3	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	58	72	-	9.22857	4.4e-05	0.106	TGCACCCTCCTGCGT
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	20	30	+	11.4388	4.4e-05	0.285	CGCCACGTGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	20	30	+	11.4388	4.4e-05	0.285	CGCCACGTGGA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	16	26	-	11.9808	4.41e-05	0.0739	AGCCTGGGGCC
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	-	11.9808	4.41e-05	0.0739	TGCTTCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	66	76	+	11.9808	4.41e-05	0.0739	AGCCCGAAGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	66	76	+	11.9808	4.41e-05	0.0739	AGCCCGAAGCA
ELF4	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	29	40	+	10.1967	4.41e-05	0.0974	CTCCCGGAAGCC
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	42	50	-	12.4831	4.41e-05	0.206	TACACGTGT
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	42	50	-	12.4831	4.41e-05	0.206	TACACGTGT
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	42	50	-	12.4831	4.41e-05	0.206	TACACGTGT
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	12.6538	4.41e-05	0.293	CGCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	-	12.6538	4.41e-05	0.293	TCCACGTGCT
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	-	12.6538	4.41e-05	0.293	TCCACGTGCT
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	12.6538	4.41e-05	0.293	CGCACGTGGC
NR2C2	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	45	59	+	10.3571	4.41e-05	0.118	CGAGGGAAAGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	56	70	-	10.3571	4.41e-05	0.118	CGAGGGAAAGGGGCG
EGR3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	14	28	+	7.74138	4.41e-05	0.0373	ATCCGCCCGCCCACG
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	33	47	-	7.74138	4.41e-05	0.0373	ATCCGCCCGCCCACG
EGR3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	87	101	-	7.74138	4.41e-05	0.0373	ATCCGCCCGCCCACG
Hoxd8	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	66	82	-	11.5238	4.41e-05	1	TCTGTTATTAATAACTG
RREB1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	34	53	-	5.10092	4.41e-05	0.0555	CCCCACCCCGCCCCGCCCAT
RREB1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	62	81	+	5.10092	4.41e-05	0.0555	CCCCACCCCGCCCCGCCCAT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	12.0545	4.41e-05	0.108	ACCGGAAGGC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	12.0545	4.41e-05	0.108	ACCGGAAGGC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	12.0545	4.41e-05	0.108	ACCGGAAGGC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	41	-	12.0862	4.41e-05	0.103	TCCGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	41	-	12.0862	4.41e-05	0.103	TCCGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	41	-	12.0862	4.41e-05	0.103	TCCGGAAGTA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	41	-	12.0862	4.41e-05	0.103	TCCGGAAGTA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	38	54	-	5.36364	4.41e-05	0.0245	CTCGCCCCGGCCCCGCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	38	54	-	5.36364	4.41e-05	0.0245	CTCGCCCCGGCCCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	38	54	-	5.36364	4.41e-05	0.0245	CTCGCCCCGGCCCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	38	54	-	5.36364	4.41e-05	0.0245	CTCGCCCCGGCCCCGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	93	109	-	5.36364	4.41e-05	0.0245	CCAGCCGCGCCCTCCCC
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	-	7.25714	4.41e-05	0.269	AGTTTCTGTGGAAACT
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	-	7.25714	4.41e-05	0.269	AGTTTCTGTGGAAACT
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	22	35	+	-0.309091	4.41e-05	0.732	TTGAAACCAAAAGC
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	22	35	+	-0.309091	4.41e-05	0.732	TTGAAACCAAAAGC
IRF8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	22	35	+	-0.309091	4.41e-05	0.732	TTGAAACCAAAAGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	59	71	-	11.3607	4.41e-05	0.0586	CGCCTCCGAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	59	71	-	11.3607	4.41e-05	0.0586	CGCCTCCGAGGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	87	99	+	11.3607	4.41e-05	0.0586	GGCCGGCGGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	-	11.3607	4.41e-05	0.0586	TGCCTGGGGGGGC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	36	49	+	11.7273	4.41e-05	0.0506	CCTCCTTAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	36	49	+	11.7273	4.41e-05	0.0506	CCTCCTTAGGCCTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	17	37	-	10.4694	4.41e-05	0.0157	GGGGGAGCCCGGGGCGGGGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	17	37	-	10.4694	4.41e-05	0.0157	GGGGGAGCCCGGGGCGGGGCC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	17	37	-	10.4694	4.41e-05	0.0157	GGGGGAGCCCGGGGCGGGGCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	17	37	-	10.4694	4.41e-05	0.0157	GGGGGAGCCCGGGGCGGGGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	64	84	-	10.4694	4.41e-05	0.0157	AAGAGAAGGGAGGAGGGGAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	82	102	-	10.4694	4.41e-05	0.0157	GGGGCAGCAGGAGAGGGGCTG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	90	110	-	10.4694	4.41e-05	0.0157	GGAGGGGAAGGGGACGAGGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	26	46	+	10.4694	4.41e-05	0.0157	GGAGGTGTCTAAGGGGGTGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	29	49	+	10.4694	4.41e-05	0.0157	GGGGAAGGGGCCGGCGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	43	63	+	10.4694	4.41e-05	0.0157	AGAAGAGAGCGGGAGGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	43	63	+	10.4694	4.41e-05	0.0157	AGAAGAGAGCGGGAGGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	68	88	+	10.4694	4.41e-05	0.0157	GGGGGCGGGAGCAGAGAGACA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	30	44	-	11.1636	4.41e-05	0.109	AGCCCCACACTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	30	44	-	11.1636	4.41e-05	0.109	AGCCCCACACTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	30	44	-	11.1636	4.41e-05	0.109	AGCCCCACACTGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	30	44	-	11.1636	4.41e-05	0.109	AGCCCCACACTGCGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	86	100	-	11.1636	4.41e-05	0.109	GGCAGCCCGCGGCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	69	82	-	9.89655	4.41e-05	0.0301	AAGCACGCCCCTGA
RUNX3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	23	32	-	12.0577	4.41e-05	0.439	CAACCGCACA
RUNX3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	25	34	-	12.0577	4.41e-05	0.439	CAACCGCACA
RUNX3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	81	90	+	12.0577	4.41e-05	0.439	CAACCGCACA
RUNX3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	83	92	+	12.0577	4.41e-05	0.439	CAACCGCACA
SP2	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	13	27	+	11.3103	4.42e-05	0.0111	TCTCCGCCCCACAGC
SP2	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	26	40	+	11.3103	4.42e-05	0.0111	CCCCCACCCCGCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	26	40	+	11.3103	4.42e-05	0.0111	TCTCCTCCTCCTCCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	43	57	+	11.3103	4.42e-05	0.0111	CCTCCTCCCCTTCGT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	43	57	+	11.3103	4.42e-05	0.0111	CCTCCTCCCCTTCGT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	43	57	+	11.3103	4.42e-05	0.0111	CCTCCTCCCTCTTCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	43	57	+	11.3103	4.42e-05	0.0111	CCTCCTCCCTCTTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	7	21	-	11.3103	4.42e-05	0.0111	CCCCCACCCATCCCA
SP2	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	19	33	-	11.3103	4.42e-05	0.0111	TCTCCTCCTCCGCCT
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	59	70	-	11.7742	4.42e-05	0.281	GAAACCACCAAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	59	70	-	11.7742	4.42e-05	0.281	GAAACCACCAAC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	83	94	+	11.7742	4.42e-05	0.281	GAAACCACCAAC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	-	11.8061	4.42e-05	0.0857	TGGCCTCGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	-	11.8061	4.42e-05	0.0857	TGGCCTCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	-	11.8061	4.42e-05	0.0857	TGGCCTCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	-	11.8061	4.42e-05	0.0857	TGGCCTCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	-	11.8061	4.42e-05	0.0857	TGGCCTCGGGCG
HOXD13	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	2	11	+	12.1587	4.42e-05	1	GTCATAAAAA
HOXD13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	77	86	+	12.1587	4.42e-05	1	GTCATAAAAA
HOXD13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	77	86	+	12.1587	4.42e-05	1	GTCATAAAAA
ETV2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	26	36	+	11.5246	4.42e-05	0.144	AACAGGAAGTC
ETV2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	89	-	11.5246	4.42e-05	0.144	AACAGGAAGTC
SOX4	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	31	46	+	-10.2879	4.42e-05	1	GAAAAATTTCAGTAGT
RREB1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	33	52	-	5.09174	4.42e-05	0.0555	CCCCACCCCCGCCCCACTGG
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	42	61	+	5.09174	4.42e-05	0.0555	CCACTCCCCCCACCCCACCC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	13	24	-	11.6571	4.42e-05	0.217	CCCGCCCACCAG
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr2:87769389..87769503,+__452.1.0.0	15	26	-	11.6571	4.42e-05	0.217	GGGGCCCACCCG
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	38	49	-	11.6571	4.42e-05	0.217	CCCGCCCACCAG
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	74	85	-	11.6571	4.42e-05	0.217	CCCGCCCACCAG
ZBTB7A	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	30	41	+	11.6571	4.42e-05	0.217	CCCGCCCACCAG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	79	90	+	11.6571	4.42e-05	0.217	CGGGCCCACCCA
ZBTB7A	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	91	102	+	11.6571	4.42e-05	0.217	CCCGCCCACCAG
BATF3	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	32	45	+	2.59091	4.42e-05	0.171	GTCTGACGTCATTC
NRF1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	15	25	+	11.0727	4.42e-05	0.0169	GCCCCGGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	43	53	+	11.0727	4.42e-05	0.0169	GCACACGCGCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	66	76	+	11.0727	4.42e-05	0.0169	GCACACGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	85	95	+	11.0727	4.42e-05	0.0169	GCACACGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	20	30	-	11.0727	4.42e-05	0.0169	GCACACGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	53	63	-	11.0727	4.42e-05	0.0169	GCCCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	53	63	-	11.0727	4.42e-05	0.0169	GCCCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	53	63	-	11.0727	4.42e-05	0.0169	GCCCCGGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	59	69	-	11.0727	4.42e-05	0.0169	GCCCCGGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	62	72	-	11.0727	4.42e-05	0.0169	GCACACGCGCA
Lhx3	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	65	77	-	11.2376	4.42e-05	1	TAATTAATCTTCT
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	72	88	-	4.60656	4.42e-05	0.563	AGTGCAGATAAGGGCCA
Pax6	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	27	40	-	11.3222	4.42e-05	1	TTAACTCTTGAATT
Hoxd9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	31	40	+	11.2917	4.42e-05	1	GCAATAAATA
Hoxd9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	31	40	+	11.2917	4.42e-05	1	GCAATAAATA
Arid3b	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	68	78	+	11.3492	4.42e-05	1	AGATTAATTAA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	22	32	+	11.7424	4.42e-05	0.0469	AGTCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	22	32	+	11.7424	4.42e-05	0.0469	AGTCCCACCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	80	90	+	11.7424	4.42e-05	0.0469	AGTCCCACCCT
CTCF	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	36	54	+	9.67213	4.42e-05	0.114	TGAGCGCCAGAAGGCAGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	76	94	+	9.67213	4.42e-05	0.114	CTGCAAGCAGAGGCCGGCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	76	94	+	9.67213	4.42e-05	0.114	CTGCAAGCAGAGGCCGGCA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	76	94	+	9.67213	4.42e-05	0.114	CTGCAAGCAGAGGCCGGCA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	91	109	+	9.67213	4.42e-05	0.114	CTGCAAGCAGAGGCCGGCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	91	109	+	9.67213	4.42e-05	0.114	CTGCAAGCAGAGGCCGGCA
FOS	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	-	12.0213	4.43e-05	0.211	GCTGACTCAGT
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	81	91	+	12.0213	4.43e-05	0.211	GATGACTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	81	91	+	12.0213	4.43e-05	0.211	GATGACTCACA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	81	91	+	12.0213	4.43e-05	0.211	GATGACTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	81	91	+	12.0213	4.43e-05	0.211	GATGACTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	+	12.0213	4.43e-05	0.211	GCTGACTCAGT
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	+	12.0213	4.43e-05	0.211	GCTGACTCAGT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	40	60	+	10	4.43e-05	0.173	CTGCTGTTCCTTTTTTTTTTT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	31	45	+	8.57895	4.43e-05	0.224	CCCATGACAAAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	33	47	-	8.57895	4.43e-05	0.224	CCCATGACAAAGCAT
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	33	47	-	8.57895	4.43e-05	0.224	CCCATGACAAAGCAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	33	47	-	8.57895	4.43e-05	0.224	CCCATGACAAAGCAT
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	61	+	7.10112	4.43e-05	0.255	GCCCCCAGGGGGGCC
Znf423	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	61	+	7.10112	4.43e-05	0.255	GCCCCCAGGGGGGCC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	61	+	7.10112	4.43e-05	0.255	GCCCCCAGGGGGGCC
Znf423	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	68	-	7.10112	4.43e-05	0.255	GCCCCCAGGGGGGCC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	11	22	+	11.8727	4.43e-05	0.0893	TCCCCCGAGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	+	11.8727	4.43e-05	0.0893	CGCCCGCAGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	+	11.8727	4.43e-05	0.0893	CGCCCGCAGGCC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	57	68	+	11.8727	4.43e-05	0.0893	CACCCGCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	+	11.8727	4.43e-05	0.0893	CGCCCGCAGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	+	11.8727	4.43e-05	0.0893	CGCCCGCAGGCC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	63	74	-	11.8727	4.43e-05	0.0893	AACCCGAGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	104	-	11.8727	4.43e-05	0.0893	TCCCCCGAGGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	46	56	-	12.0182	4.43e-05	0.0568	CCACTTCCTCT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	46	56	-	12.0182	4.43e-05	0.0568	CCACTTCCTCT
ELK4	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	55	65	-	12.0182	4.43e-05	0.0568	CCACTTCCTCT
ELK4	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	48	58	+	12.0182	4.43e-05	0.0568	CCACTTCCTCT
ELK4	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	59	69	+	12.0182	4.43e-05	0.0568	CCACTTCCTCT
FOXA1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	2	16	+	12.1633	4.43e-05	1	CGCCTGTTGACACAA
FOXA1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	27	41	+	12.1633	4.43e-05	1	CGCCTGTTGACACAA
FOXA1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	74	88	-	12.1633	4.43e-05	1	CGCCTGTTGACACAA
FOXA1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	99	113	-	12.1633	4.43e-05	1	CGCCTGTTGACACAA
HOXA10	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	61	-	11.2453	4.43e-05	1	AGTCATTAAAA
NFYB	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	8	22	-	11.5962	4.43e-05	0.143	CCAACAACCAATCGC
REST	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	46	66	-	6.27551	4.43e-05	0.212	CCCGGAACCGAGGTCAACTAC
ZIC1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	13	26	+	7.61702	4.43e-05	0.0994	AGCCCCCTGGCGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	33	46	+	7.61702	4.43e-05	0.0994	AGCCCCCTGGCGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	42	55	-	7.61702	4.43e-05	0.0994	TCCTCCCTGCGGGG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	69	82	-	7.61702	4.43e-05	0.0994	AGCCCCCTGGCGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	89	102	-	7.61702	4.43e-05	0.0994	AGCCCCCTGGCGCG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	96	111	+	10.7879	4.43e-05	0.247	AATAACCATGACAATG
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	96	111	+	10.7879	4.43e-05	0.247	AATAACCATGACAATG
RFX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	96	111	+	10.7879	4.43e-05	0.247	AATAACCATGACAATG
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	96	111	+	10.7879	4.43e-05	0.247	AATAACCATGACAATG
EGR3	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	10	24	-	7.72414	4.43e-05	0.0373	TCACTCCCCCACAAC
EGR3	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	91	105	+	7.72414	4.43e-05	0.0373	TCACTCCCCCACAAC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	18	32	+	11.1667	4.43e-05	0.0988	TTCCCGTGGGATCCG
RREB1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	2	21	-	5.08257	4.43e-05	0.0555	TCCAAACACACACACACACA
RREB1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	94	113	+	5.08257	4.43e-05	0.0555	TCCAAACACACACACACACA
SP3	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	2	12	-	11.6911	4.43e-05	0.0185	CCCACGCCTAA
GLI2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	26	37	-	11.1897	4.43e-05	0.33	CCGCCCACCATG
GLI2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	26	37	-	11.1897	4.43e-05	0.33	CCGCCCACCATG
GLI2	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	78	89	+	11.1897	4.43e-05	0.33	CCGCCCACCATG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	2	16	+	11.4775	4.43e-05	0.176	GGAGGGGAAGGGGCG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	21	35	+	11.4775	4.43e-05	0.176	GGAGGGGAAGGGGCG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	75	89	-	11.4775	4.43e-05	0.176	GGAGGGGAAGGGGCG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	63	77	-	9.7377	4.43e-05	0.415	GTGAGTCAGGTCTTT
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	28	39	+	11.7349	4.43e-05	1	TCATGCAAATCA
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	33	44	-	11.7349	4.43e-05	1	TCATGCAAATCA
ETV6	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
ETV6	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	12.0577	4.44e-05	0.0907	CCCGGAAGTC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	60	73	-	10.6857	4.44e-05	0.251	CGGAGACGTCACTC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	60	73	-	10.6857	4.44e-05	0.251	CGGAGACGTCACTC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.2553	4.44e-05	0.0838	GGCGGAAGTG
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	53	67	+	11.8169	4.44e-05	0.341	ACAAAGTAAAGAGAA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	-	9.21101	4.44e-05	0.848	GGACAGCTGTTA
GATA2	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	74	87	-	12.3091	4.44e-05	1	AGTCTCTTATCTGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	16	29	+	6.89796	4.44e-05	0.0714	GTGGGCCTGGAGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	16	29	+	6.89796	4.44e-05	0.0714	GTGGGCCTGGAGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	16	29	+	6.89796	4.44e-05	0.0714	GTGGGCCTGGAGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	16	29	+	6.89796	4.44e-05	0.0714	GTGGGCCTGGAGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	28	41	-	6.89796	4.44e-05	0.0714	GTGGGCCTGGGAGG
PLAG1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	74	87	+	6.89796	4.44e-05	0.0714	GTGGGCCTGGGAGG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	102	113	-	11.8909	4.44e-05	0.055	AGCCCCAAGCCG
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	+	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	+	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	-	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	-	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	-	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	-	11.7234	4.44e-05	0.191	CATGAGTCATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	-	11.7234	4.44e-05	0.191	CATGAGTCATC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	37	51	+	11.9111	4.44e-05	0.964	ACTCCTCAGCAAATC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	40	54	-	11.9111	4.44e-05	0.964	ACTCCTCAGCAAATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	14	27	-	11.1538	4.44e-05	0.0196	CCCCTTCCCCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	14	27	-	11.1538	4.44e-05	0.0196	CCCCTTCCCCCTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	14	27	-	11.1538	4.44e-05	0.0196	CCCCTTCCCCCTTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	16	29	-	11.1538	4.44e-05	0.0196	CCCTCACCCCCATC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	54	67	+	11.1538	4.44e-05	0.0196	AGGCCGCTCCCGCC
ESR2	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	36	50	+	11.4615	4.44e-05	0.426	GGGTCACAGGCCCCC
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	27	41	-	11.4615	4.44e-05	0.426	GGGTCAGCCAGTTCG
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	27	41	-	11.4615	4.44e-05	0.426	GGGTCAGCCAGTTCG
ESR2	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	65	79	-	11.4615	4.44e-05	0.426	GGGTCACAGGCCCCC
HNF1A	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	32	46	+	11.1039	4.44e-05	0.844	AATTAAACGTTAACG
HNF1A	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	69	83	-	11.1039	4.44e-05	0.844	AATTAAACGTTAACG
NFYA	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	22	39	+	10.1829	4.44e-05	0.139	AAAGTTGCCATTGGCCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	39	50	-	4.84483	4.44e-05	0.189	AGGCACGTGTGT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	39	50	-	4.84483	4.44e-05	0.189	AGGCACGTGTGT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	16	-	11.8545	4.44e-05	0.134	TGGCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	16	-	11.8545	4.44e-05	0.134	TGGCGGAAGTG
ELF5	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	99	109	+	11.8545	4.44e-05	0.134	TGGCGGAAGTG
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	80	89	+	11.3367	4.44e-05	0.23	AGTCACGCGA
TCF7L2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	46	59	+	11.8727	4.44e-05	1	GAAGATCAAAAACC
TCF7L2	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	84	97	-	11.8727	4.44e-05	1	GGACATCAAAGTTG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	20	-	11.7143	4.44e-05	0.0191	TGGGAGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	16	25	-	11.7143	4.44e-05	0.0191	TGGGAGGGGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	16	25	-	11.7143	4.44e-05	0.0191	TGGGAGGGGT
Klf4	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	25	34	-	11.7143	4.44e-05	0.0191	TGGGAGGGGT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	63	72	-	11.7143	4.44e-05	0.0191	TGGGAGGGGT
Klf4	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	81	90	+	11.7143	4.44e-05	0.0191	TGGGAGGGGT
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	25	39	+	11.6383	4.44e-05	0.32	GGAAGTGACATCACA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	+	11.0345	4.44e-05	0.0554	GCCCCGGGGGGGT
RXRG	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	17	30	+	3.3617	4.44e-05	0.48	GAGGTGAAGGGGCG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	6	21	+	11.0364	4.44e-05	0.0374	GCCCGGCCCCGCCTTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	6	21	+	11.0364	4.44e-05	0.0374	GCCCGGCCCCGCCTTT
EGR4	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	7	22	-	11.0364	4.44e-05	0.0374	CCAGGCCCACGCTAGC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	25	40	+	11.0364	4.44e-05	0.0374	CCCAGCCCCCGCCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	28	43	+	11.0364	4.44e-05	0.0374	GCAGGCCCGCCCACTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	28	43	+	11.0364	4.44e-05	0.0374	GCAGGCCCGCCCACTT
EGR4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	51	66	+	11.0364	4.44e-05	0.0374	CCGCCCCCACGCCCTC
EGR4	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	39	54	-	11.0364	4.44e-05	0.0374	CACCCCCCACCCCCAC
EGR4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	49	64	-	11.0364	4.44e-05	0.0374	CCGCCCCCACGCCCTC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	94	109	-	11.0364	4.44e-05	0.0374	GCCCGGCCCCGCCTTT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	39	48	+	11.3761	4.44e-05	0.0543	ACTCCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	93	102	+	11.3761	4.44e-05	0.0543	ACTCCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	13	22	-	11.3761	4.44e-05	0.0543	ACTCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	27	36	-	11.3761	4.44e-05	0.0543	ACTCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	31	40	-	11.3761	4.44e-05	0.0543	ACTCCCCCAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	10.2727	4.44e-05	0.0858	GGCACGTGTT
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	10.2727	4.44e-05	0.0858	GGCACGTGTT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	2	11	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	3	12	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	3	12	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	3	12	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	3	12	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	4	13	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	4	13	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	4	13	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	4	13	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	13	22	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	14	23	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	14	23	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	19	28	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	19	28	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	22	31	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	22	31	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	46	55	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	55	64	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	69	78	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	72	81	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	89	98	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	92	101	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	95	104	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	95	104	-	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	14	23	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	25	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	17	26	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	17	26	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	20	29	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	20	29	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	29	38	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	43	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	50	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	50	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	45	54	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	51	60	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	51	60	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	51	60	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	60	69	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	70	79	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	70	79	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	92	101	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	102	+	12.0204	4.44e-05	0.0184	CTCCCGCCCC
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	9	17	-	11.5918	4.44e-05	1	TATGCAAAA
POU3F4	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	13	21	-	11.5918	4.44e-05	1	TATGCAAAA
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	33	41	-	11.5918	4.44e-05	1	TATGCAAAA
T	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	13	28	-	9	4.44e-05	1	TGACATCCATTTGTCA
T	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	34	49	+	9	4.44e-05	1	TGACATCCATTTGTCA
T	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	34	49	+	9	4.44e-05	1	TGACATCCATTTGTCA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	79	89	-	12.1724	4.44e-05	0.0554	GGGAGGGAATA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	79	89	-	12.1724	4.44e-05	0.0554	GGGAGGGAATA
E2F6	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	89	99	-	12.1724	4.44e-05	0.0554	GCGAGGGAGAC
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	4	20	+	4.59016	4.44e-05	0.563	GGGGCAGGATGGGGGCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	4	20	+	4.59016	4.44e-05	0.563	GGGGCAGGATGGGGGCA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	55	72	+	-11.6316	4.44e-05	0.0414	GGAGGGAAGGGCGGGCGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	43	60	-	-11.6316	4.44e-05	0.0414	GGAGGGAAGGGCGGGCGG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	63	76	+	5.24242	4.44e-05	0.379	CACCCTCCGCGAAC
Gmeb1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	19	35	+	11.0789	4.45e-05	0.614	GCGCTGACGTCAGCAGG
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	19	35	+	11.0789	4.45e-05	0.614	GCGCTGACGTCAGCAGG
Gmeb1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	19	35	+	11.0789	4.45e-05	0.614	GCGCTGACGTCAGCAGG
Gmeb1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	80	96	-	11.0789	4.45e-05	0.614	GCGCTGACGTCAGCAGG
TFEB	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	32	41	+	12.0962	4.45e-05	0.131	GTCACATGCC
RUNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	33	43	+	11.8793	4.45e-05	0.241	TTCTGTGGCTG
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	33	43	+	11.8793	4.45e-05	0.241	TTCTGTGGCTG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	101	114	-	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	101	114	-	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	101	114	-	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	101	114	-	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	18	31	+	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	18	31	+	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	18	31	+	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	18	31	+	8.64286	4.45e-05	0.151	CAATGACGTCTCCG
RARA	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	30	47	+	-7.37879	4.45e-05	1	GAGGGCAGGGGGTCGCTG
RREB1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	23	42	-	5.07339	4.45e-05	0.0555	CCCCGCCAGAACACCCCAGC
RREB1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	73	92	+	5.07339	4.45e-05	0.0555	CCCCGCCAGAACACCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	13	+	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	13	+	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	13	+	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	13	+	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	13	+	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
SP8	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	19	30	+	11.5263	4.45e-05	0.0285	GCCACCACCCCT
SP8	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	85	96	-	11.5263	4.45e-05	0.0285	GCCACCACCCCT
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	102	113	-	11.5263	4.45e-05	0.0285	TCCCCCCCCCCC
Stat4	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	99	112	+	12.0862	4.45e-05	0.258	ATTCTAGGAAATTC
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	30	46	+	11.8158	4.45e-05	1	AAAGAGCTGTAACACAT
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	53	69	-	11.8158	4.45e-05	1	AAAGAGCTGTAACACAT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	1	14	-	9.87931	4.45e-05	0.0301	GGGTCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	1	14	-	9.87931	4.45e-05	0.0301	GGGTCCGCCCCCCG
Tcf12	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	84	94	-	12.6122	4.45e-05	0.158	CGCAGCTGCTC
Tcf12	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	104	114	-	12.6122	4.45e-05	0.158	CGCAGCTGCTC
Tcf12	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	11	+	12.6122	4.45e-05	0.158	CGCAGCTGCTC
Tcf12	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	31	+	12.6122	4.45e-05	0.158	CGCAGCTGCTC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	25	35	+	12.6122	4.45e-05	0.158	GACAGCTGATT
GLIS2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	67	+	9.27869	4.45e-05	0.185	GGCCCCCCTGGGGG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	48	61	-	9.27869	4.45e-05	0.185	GGCCCCCCTGGGGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	48	61	-	9.27869	4.45e-05	0.185	GGCCCCCCTGGGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	48	61	-	9.27869	4.45e-05	0.185	GGCCCCCCTGGGGG
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	14	25	+	9.94545	4.45e-05	0.19	GCTGACATCACT
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	14	25	+	9.94545	4.45e-05	0.19	GCTGACATCACT
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	79	92	-	4.41463	4.45e-05	0.414	AGGGTTAAAGTCCG
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	79	92	-	4.41463	4.45e-05	0.414	AGGGTTAAAGTCCG
Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	79	92	-	4.41463	4.45e-05	0.414	AGGGTTAAAGTCCG
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	79	92	-	4.41463	4.45e-05	0.414	AGGGTTAAAGTCCG
NRF1	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	44	54	+	11.0545	4.45e-05	0.0169	GCCCGGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	48	58	+	11.0545	4.45e-05	0.0169	GCGGGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	51	61	+	11.0545	4.45e-05	0.0169	GCGGGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	51	61	+	11.0545	4.45e-05	0.0169	GCGGGCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	52	62	+	11.0545	4.45e-05	0.0169	GCCCGGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	95	105	+	11.0545	4.45e-05	0.0169	GCGGGCGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	98	108	+	11.0545	4.45e-05	0.0169	GCCCGGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	10	20	-	11.0545	4.45e-05	0.0169	GCGGGCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	53	63	-	11.0545	4.45e-05	0.0169	GCCCGGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	61	71	-	11.0545	4.45e-05	0.0169	GCCCGGGCGCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	59	73	+	11.2931	4.45e-05	0.0112	CGCCCACCCCCTAGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	59	73	+	11.2931	4.45e-05	0.0112	CGCCCACCCCCTAGT
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	66	75	-	12.1585	4.45e-05	0.472	ATCAGGCCAC
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	66	75	-	12.1585	4.45e-05	0.472	ATCAGGCCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	66	75	-	12.1585	4.45e-05	0.472	ATCAGGCCAC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	-	7.22857	4.45e-05	0.27	AGTTACTATGTCAACA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	12	22	+	11.7273	4.45e-05	0.0469	GCCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	29	39	+	11.7273	4.45e-05	0.0469	GCCCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	56	66	+	11.7273	4.45e-05	0.0469	GCCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	56	66	+	11.7273	4.45e-05	0.0469	GCCCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	83	93	+	11.7273	4.45e-05	0.0469	GACAACACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	49	59	-	11.7273	4.45e-05	0.0469	GCCCCCGCCCT
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	68	78	+	11.9091	4.45e-05	0.0682	ACCCTGAGGCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	37	47	-	11.9091	4.45e-05	0.0682	ACCCTGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	40	50	-	11.9091	4.45e-05	0.0682	ACCCTGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	40	50	-	11.9091	4.45e-05	0.0682	ACCCTGAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	-	11.9091	4.45e-05	0.0682	AGCCTAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	-	11.9091	4.45e-05	0.0682	AGCCTAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	64	-	11.9091	4.45e-05	0.0682	CCCCGCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	64	-	11.9091	4.45e-05	0.0682	CCCCGCAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	64	-	11.9091	4.45e-05	0.0682	CCCCGCAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	79	-	11.9091	4.45e-05	0.0682	CCCCGCAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	79	-	11.9091	4.45e-05	0.0682	CCCCGCAGGCT
Foxj3	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	10	26	-	11.9091	4.45e-05	1	GTGGAATAAACAAATGA
Foxj3	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	89	105	+	11.9091	4.45e-05	1	GTGGAATAAACAAATGA
Myod1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	11	23	+	12.5714	4.46e-05	0.152	GCCAGCTGCGCCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	108	+	12.5714	4.46e-05	0.152	GGCAGCTGCGGGT
Myod1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	7	19	-	12.5714	4.46e-05	0.152	GGCAGCTGCGGGT
Myod1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	92	104	-	12.5714	4.46e-05	0.152	GCCAGCTGCGCCA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	12	26	-	7.7069	4.46e-05	0.0373	CTCCGCCCACGAGGT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	12	26	-	7.7069	4.46e-05	0.0373	CTCCGCCCACGAGGT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	12	26	-	7.7069	4.46e-05	0.0373	CTCCGCCCACGAGGT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	12	26	-	7.7069	4.46e-05	0.0373	CTCCGCCCACGAGGT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	32	46	+	7.7069	4.46e-05	0.0373	CCCCGCCCCCGTCGA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	32	46	+	7.7069	4.46e-05	0.0373	CCCCGCCCCCGTCGA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	32	46	+	7.7069	4.46e-05	0.0373	CCCCGCCCCCGTCGA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	32	46	+	7.7069	4.46e-05	0.0373	CCCCGCCCCCGTCGA
EGR3	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	89	103	+	7.7069	4.46e-05	0.0373	CTCCGCCCACGAGGT
Myog	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	13	-	12.5918	4.46e-05	0.139	GACAGGTGCCC
Myog	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	112	+	12.5918	4.46e-05	0.139	GACAGGTGCCC
ZNF143	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	39	54	+	3.17241	4.46e-05	0.31	TTCCCATCAGCCCTTG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	79	97	-	9.65574	4.46e-05	0.114	CAGCCGAGAGGGGGCTCTG
SCRT2	WILDTYPE__mrna.noflip.NA__chr10:14574678..14574792,-__974.1.0.0	82	94	-	8.13115	4.46e-05	0.852	CAGCCACAAGTGT
Klf12	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	7	21	+	9.42623	4.46e-05	0.0565	TACCACTCCCCTAAC
Klf12	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	12	26	-	9.42623	4.46e-05	0.0565	GGCCCCACCCCGCCC
Klf12	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	89	103	+	9.42623	4.46e-05	0.0565	GGCCCCACCCCGCCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	98	+	11.1639	4.46e-05	0.0641	GGCCCTAGGGGGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	49	63	-	9.2	4.46e-05	0.106	CGCCCCCTCCCGCTC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	49	63	-	9.2	4.46e-05	0.106	CGCCCCCTCCCGCTC
ZIC4	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	10	24	-	11.1455	4.46e-05	0.109	CAAACCCCGCCGTGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	61	75	+	11.1455	4.46e-05	0.109	TCCCGCCCGTTGTCC
ZIC4	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	91	105	+	11.1455	4.46e-05	0.109	CAAACCCCGCCGTGC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	80	91	+	11.7581	4.46e-05	0.281	ACAACCACCAGC
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	31	40	+	12.4262	4.46e-05	0.89	TAAACTGACA
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	31	40	+	12.4262	4.46e-05	0.89	TAAACTGACA
PLAG1	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	10	23	-	6.88776	4.46e-05	0.0714	GGGGCGGAGCGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	13	26	-	6.88776	4.46e-05	0.0714	GGGGCGGAGCGGGG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	87	101	-	11.4685	4.46e-05	0.176	GGAGGGAAAGGGGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	10	30	-	10.449	4.46e-05	0.0157	GATTGAGGACTGGGCGGGAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	20	40	-	10.449	4.46e-05	0.0157	GGTGGAATCTGGGAAGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	56	76	-	10.449	4.46e-05	0.0157	GAAGCAGTAGCAAGGGGTAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	62	82	-	10.449	4.46e-05	0.0157	GATGCCAGAGGAGGGGAAGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	76	96	-	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	76	96	-	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	76	96	-	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	76	96	-	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	87	107	-	10.449	4.46e-05	0.0157	GGGGAAGGGGACGAGGAAAGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	13	33	+	10.449	4.46e-05	0.0157	GAGGCGGGGGAAGGCGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	24	44	+	10.449	4.46e-05	0.0157	GATGCCAGAGGAGGGGAAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	29	49	+	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	29	49	+	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	29	49	+	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	29	49	+	10.449	4.46e-05	0.0157	AGGGGGTGGAGGGAGGGAAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	56	76	+	10.449	4.46e-05	0.0157	CGAGGGGGGCGCGGAGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	59	79	+	10.449	4.46e-05	0.0157	GGGGGGCGCGGAGGAGGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	60	80	+	10.449	4.46e-05	0.0157	GGGGGCGCGGAGGAGGAGGCG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	65	85	+	10.449	4.46e-05	0.0157	GGGTGGGGGTGTGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	65	85	+	10.449	4.46e-05	0.0157	GGGTGGGGGTGTGGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	70	90	+	10.449	4.46e-05	0.0157	GGGGCAGGACAGAGTTGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	90	110	+	10.449	4.46e-05	0.0157	GAAGATGGAGGGAGGGATGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	90	110	+	10.449	4.46e-05	0.0157	GAAGATGGAGGGAGGGATGGC
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	20	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	20	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	54	61	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	63	70	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	78	85	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	83	90	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	102	109	-	11.8776	4.46e-05	0.606	GGGTGTGA
TBX15	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	56	63	-	11.6731	4.46e-05	0.661	AGGTGTTA
MGA	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	56	63	-	11.7576	4.46e-05	0.816	AGGTGTTA
Atf1	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	2	9	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	10	17	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	13	20	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	22	29	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	31	38	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	33	40	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	36	43	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	44	51	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	48	55	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	56	63	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	59	66	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	63	70	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	70	77	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	75	82	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	76	83	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	78	85	-	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	85	92	-	11.5246	4.46e-05	0.377	GTGACGCA
NR4A2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	28	35	-	11.7475	4.46e-05	0.706	AAGGTCAA
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	29	36	-	11.7475	4.46e-05	0.706	AAGGTCAA
NR4A2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	29	36	-	11.7475	4.46e-05	0.706	AAGGTCAA
NR4A2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	29	36	-	11.7475	4.46e-05	0.706	AAGGTCAA
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	48	55	-	11.7475	4.46e-05	0.706	AAGGTCAA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	6	13	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	6	13	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	36	43	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	51	58	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	51	58	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	54	61	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	98	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	98	+	11.8776	4.46e-05	0.606	GGGTGTGA
TBX1	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	99	106	+	11.8776	4.46e-05	0.606	GGGTGTGA
Atf1	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	7	14	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	12	19	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	23	30	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	30	37	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	32	39	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	33	40	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	45	52	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	49	56	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	49	56	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	50	57	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	52	59	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	60	67	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	61	68	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	61	68	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	73	80	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	73	80	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	77	84	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	95	102	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	98	105	+	11.5246	4.46e-05	0.377	GTGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	106	113	+	11.5246	4.46e-05	0.377	GTGACGCA
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	52	-	10.2182	4.46e-05	0.103	GGTCCGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	52	-	10.2182	4.46e-05	0.103	GGTCCGGAAGTC
ELF1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	65	-	10.2182	4.46e-05	0.103	ATTCCGGAAGCC
HES5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	34	-	4.39655	4.46e-05	0.296	CGTCACGTGCCC
HES5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	113	-	4.39655	4.46e-05	0.296	CGTCACGTGCCC
HES5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	13	+	4.39655	4.46e-05	0.296	CGTCACGTGCCC
HES5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	92	+	4.39655	4.46e-05	0.296	CGTCACGTGCCC
CREB3	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	100	113	-	10.6714	4.46e-05	0.251	CCTAAACGTCATCA
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	2	15	+	10.6714	4.46e-05	0.251	CCTAAACGTCATCA
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	2	15	+	10.6714	4.46e-05	0.251	CCTAAACGTCATCA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	78	96	-	11.2742	4.46e-05	0.147	ACGTGCAGGAAGGCAAGAC
KLF16	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	90	100	+	11.3276	4.46e-05	0.0174	CTCACTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	15	25	-	11.3276	4.46e-05	0.0174	CTCACTCCCCC
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	70	82	+	11.4694	4.46e-05	0.301	AGAATGATCTAAT
JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	70	82	+	11.4694	4.46e-05	0.301	AGAATGATCTAAT
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	70	82	+	11.4694	4.46e-05	0.301	AGAATGATCTAAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	70	82	+	11.4694	4.46e-05	0.301	AGAATGATCTAAT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	57	68	-	10.1803	4.46e-05	0.0974	GCCACGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	57	68	-	10.1803	4.46e-05	0.0974	GCCACGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	81	-	10.1803	4.46e-05	0.0974	TCGCCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	81	-	10.1803	4.46e-05	0.0974	TCGCCGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	81	-	10.1803	4.46e-05	0.0974	TCGCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	81	-	10.1803	4.46e-05	0.0974	TCGCCGGAAGTC
ETV1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	11.8	4.46e-05	0.108	ACCGGAAACT
ETV1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	11.8	4.46e-05	0.108	ACCGGAAACT
TFAP2C	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	+	11.7959	4.46e-05	0.0857	CGCCCCGCGGCG
TFAP2C	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	-	11.7959	4.46e-05	0.0857	CGCCCCGCGGCG
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	46	57	+	11.7959	4.46e-05	0.0857	AGCCCTGAGCCA
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	58	69	-	11.7959	4.46e-05	0.0857	AGCCCTGAGCCA
TFAP2C	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	+	11.7959	4.46e-05	0.0857	CGCCCCGCGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	-	11.7959	4.46e-05	0.0857	CGGCTCCGGGCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	-	11.7959	4.46e-05	0.0857	CGCCCCGCGGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	2	15	+	7.59574	4.46e-05	0.0994	GAGCCCCCGGGGCG
PITX3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	2	10	+	11.2885	4.46e-05	1	CCTAATCCT
PITX3	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	70	78	-	11.2885	4.46e-05	1	CCTAATCCT
PITX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	105	113	-	11.2885	4.46e-05	1	CCTAATCCT
PITX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	105	113	-	11.2885	4.46e-05	1	CCTAATCCT
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	28	39	-	8.25455	4.47e-05	0.823	GCTATATTTAGA
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	43	54	+	8.25455	4.47e-05	0.823	GCTATATTTAGA
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	43	54	+	8.25455	4.47e-05	0.823	GCTATATTTAGA
FOS	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	18	28	+	12	4.47e-05	0.212	TCTGACTCAGG
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	48	58	+	11.3776	4.47e-05	0.285	TAGCACGTGAC
MAX::MYC	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	67	-	11.3776	4.47e-05	0.285	TAGCACGTGAC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	32	41	-	11.7172	4.47e-05	0.297	TGGAAATTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	32	41	-	11.7172	4.47e-05	0.297	TGGAAATTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	48	57	-	11.7172	4.47e-05	0.297	TGGAAATTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	60	69	-	11.7172	4.47e-05	0.297	TGGAAATTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	60	69	-	11.7172	4.47e-05	0.297	TGGAAATTCC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	52	66	-	11.1515	4.47e-05	0.099	TTCCCGCGGTGACCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	49	63	+	11.1515	4.47e-05	0.099	TTCCCGCGGTGACCC
POU5F1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	7	15	+	11.7611	4.47e-05	1	TATTCAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	7	15	+	11.7611	4.47e-05	1	TATTCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	7	15	+	11.7611	4.47e-05	1	TATTCAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	7	15	+	11.7611	4.47e-05	1	TATTCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	7	15	+	11.7611	4.47e-05	1	TATTCAAAT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	22	34	+	9.4697	4.47e-05	0.258	GAGGGGATCCCCC
ERG	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	12.0364	4.47e-05	0.109	GCCGGATGTG
ERG	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	12.0364	4.47e-05	0.109	GCCGGATGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	12.0364	4.47e-05	0.109	GCCGGATGTG
ERG	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	12.0364	4.47e-05	0.109	GCCGGATGTG
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	48	64	+	10.6735	4.47e-05	0.338	AGGGCAACGAGAGGCAA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	48	64	+	10.6735	4.47e-05	0.338	AGGGCAACGAGAGGCAA
NFYB	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	20	34	-	11.5769	4.47e-05	0.143	CTAGGAGCCAATCAT
NFYB	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	81	95	+	11.5769	4.47e-05	0.143	CTAGGAGCCAATCAT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	17	28	+	11.8545	4.47e-05	0.0893	GCCCCCAGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	23	34	+	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	23	34	+	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	+	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	+	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	+	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	79	90	+	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	23	-	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
TFAP2B	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	36	-	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	38	-	11.8545	4.47e-05	0.0893	GCCCCCAGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	-	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	-	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	-	11.8545	4.47e-05	0.0893	CGCCCAGAGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	92	-	11.8545	4.47e-05	0.0893	CCCCCCGGGGCC
Ddit3::Cebpa	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	102	113	-	11.8889	4.47e-05	1	AGGTGCAGTCCC
ATF7	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	80	93	-	8.62857	4.47e-05	0.151	TGATGACGTCTCCG
ATF7	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	22	35	+	8.62857	4.47e-05	0.151	TGATGACGTCTCCG
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	27	38	+	11.5152	4.47e-05	0.109	CCGCGTGCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	27	38	+	11.5152	4.47e-05	0.109	CCGCGTGCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	27	38	-	11.5152	4.47e-05	0.109	CCGCGTGCGCAG
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	11.1571	4.47e-05	0.221	CTCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	11.1571	4.47e-05	0.221	CTCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	11.1571	4.47e-05	0.221	CTCACGTGAC
MLX	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	11.1571	4.47e-05	0.221	CTCACGTGAC
MLX	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	11.1571	4.47e-05	0.221	CTCACGTGAC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	7	19	-	11.1905	4.47e-05	0.475	GGAAGACACGTAC
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	7	19	-	11.1905	4.47e-05	0.475	GGAAGACACGTAC
Hes2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	21	33	+	11.1905	4.47e-05	0.475	CGTGCGCACGTGC
Hes2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	82	94	-	11.1905	4.47e-05	0.475	CGTGCGCACGTGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	+	11.3279	4.47e-05	0.0586	GCCCCCCCAGGCA
NRL	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	26	36	-	11.2115	4.47e-05	0.823	AATTTGCTTAC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	77	96	+	5.05505	4.47e-05	0.0555	CCAAAACCCGCCACACCACA
SP3	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	14	24	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	41	51	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	41	51	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	41	51	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	41	51	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	52	62	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	56	66	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	57	67	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	57	67	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	77	87	+	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	28	38	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	31	41	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	48	58	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	49	59	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	53	63	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	53	63	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	53	63	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	53	63	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	53	63	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	91	101	-	11.6667	4.47e-05	0.0185	CGCCCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	2	12	+	11.8077	4.47e-05	0.0129	GGTCCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	8	18	+	11.8077	4.47e-05	0.0129	ATCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	8	18	+	11.8077	4.47e-05	0.0129	ATCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	8	18	+	11.8077	4.47e-05	0.0129	ATCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	8	18	+	11.8077	4.47e-05	0.0129	ATCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	10	20	-	11.8077	4.47e-05	0.0129	GCTCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	10	20	-	11.8077	4.47e-05	0.0129	GCTCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	23	33	+	11.8077	4.47e-05	0.0129	GCTCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	23	33	+	11.8077	4.47e-05	0.0129	GCTCCACCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	33	43	-	11.8077	4.47e-05	0.0129	CCCCCGCCCAA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	51	61	+	11.8077	4.47e-05	0.0129	TGCCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	51	61	+	11.8077	4.47e-05	0.0129	TGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	51	61	+	11.8077	4.47e-05	0.0129	TGCCCGCCCTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	81	+	11.8077	4.47e-05	0.0129	CCCCCGCCCAA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	69	83	-	8.55263	4.47e-05	0.224	GCCCAGAGGCAGCAC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	33	42	+	12.8269	4.47e-05	0.404	CCCACCTGCG
TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	33	42	+	12.8269	4.47e-05	0.404	CCCACCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	37	-	12.8269	4.47e-05	0.404	CGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	37	-	12.8269	4.47e-05	0.404	CGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	37	-	12.8269	4.47e-05	0.404	CGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	37	-	12.8269	4.47e-05	0.404	CGCACCTGTC
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	37	-	12.8269	4.47e-05	0.404	CGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	53	62	-	12.8269	4.47e-05	0.404	CCCACCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	53	62	-	12.8269	4.47e-05	0.404	CCCACCTGCG
TCF3	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	73	82	-	12.8269	4.47e-05	0.404	CCCACCTGCG
TCF3	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	95	104	+	12.8269	4.47e-05	0.404	CGCACCTGTC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	30	41	-	11.6286	4.47e-05	0.217	CACGCCCACCAG
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	30	41	-	11.6286	4.47e-05	0.217	CACGCCCACCAG
IRF9	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	4	18	+	-0.781818	4.47e-05	0.523	CGCAAAACAGAAAGC
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	64	78	-	-0.781818	4.47e-05	0.523	CGCAAAACAGAAAGC
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	64	78	-	-0.781818	4.47e-05	0.523	CGCAAAACAGAAAGC
Nr5a2	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	90	104	+	11.1034	4.47e-05	0.385	GCGGTCAAGGTCCCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	-	11.0172	4.48e-05	0.0554	AGCCCCCAAGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	-	11.0172	4.48e-05	0.0554	AGCCCCCAAGGGC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	83	100	-	11.6545	4.48e-05	0.915	ATTATCTGCTCTGAGAAG
MAFF	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	56	73	+	11.6222	4.48e-05	0.965	CTGGAGTCAGCAGAAACG
MAFF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	16	33	-	11.6222	4.48e-05	0.965	CCTGGTTCAGCAGCTTTC
MAFF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	16	33	-	11.6222	4.48e-05	0.965	CCTGGTTCAGCAGCTTTC
MAFF	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	42	59	-	11.6222	4.48e-05	0.965	CTGGAGTCAGCAGAAACG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	3	13	-	11.9138	4.48e-05	0.0458	CAGCGGGAACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	3	13	-	11.9138	4.48e-05	0.0458	CAGCGGGAACG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	57	67	-	11.9138	4.48e-05	0.0458	AGGCGCGAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	57	67	-	11.9138	4.48e-05	0.0458	AGGCGCGAAGC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	12.0577	4.48e-05	0.119	GCCGGAAGCA
FEV	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	12.0577	4.48e-05	0.119	GCCGGAAGCA
HSF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	81	93	-	11.4634	4.48e-05	1	GTCCAGCACCTTC
HSF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	81	93	-	11.4634	4.48e-05	1	GTCCAGCACCTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	30	46	+	5.30909	4.48e-05	0.0246	AGGTCCCCGCCCCCAGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	30	46	+	5.30909	4.48e-05	0.0246	AGGTCCCCGCCCCCAGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	30	46	+	5.30909	4.48e-05	0.0246	AGGTCCCCGCCCCCAGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	30	46	+	5.30909	4.48e-05	0.0246	AGGTCCCCGCCCCCAGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	30	46	+	5.30909	4.48e-05	0.0246	AGGTCCCCGCCCCCAGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	49	65	+	5.30909	4.48e-05	0.0246	GACTCCCCGCCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	49	65	+	5.30909	4.48e-05	0.0246	GACTCCCCGCCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	49	65	+	5.30909	4.48e-05	0.0246	GACTCCCCGCCCCTGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	49	65	+	5.30909	4.48e-05	0.0246	GACTCCCCGCCCCTGCC
SP4	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	39	55	-	5.30909	4.48e-05	0.0246	CCAGCCCCGGCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	60	76	+	5.30909	4.48e-05	0.0246	CCAGCCCCGGCCCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	60	76	+	5.30909	4.48e-05	0.0246	CCAGCCCCGGCCCCGGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	2	15	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	2	15	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	7	20	-	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	7	20	-	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	7	20	-	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	7	20	-	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	26	39	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCTCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	26	39	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCTCAC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	32	45	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	32	45	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	32	45	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	32	45	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	32	45	+	9.86207	4.48e-05	0.0301	AGCCCCGCCCCGCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	38	51	-	9.86207	4.48e-05	0.0301	TGACGCGCCTCCTC
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	24	33	-	10.7317	4.48e-05	0.956	TCTTTCCATT
NFATC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	41	50	+	10.7317	4.48e-05	0.956	TTTTTCCAAT
NFATC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	41	50	+	10.7317	4.48e-05	0.956	TTTTTCCAAT
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	73	82	+	10.7317	4.48e-05	0.956	TCTTTCCATT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	+	11.7586	4.48e-05	0.126	AGCAGCTGTC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	+	11.7586	4.48e-05	0.126	AGCAGCTGTC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	+	11.7586	4.48e-05	0.126	AGCAGCTGTC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	62	79	+	-11.6579	4.48e-05	0.0417	AGGAGGGTGCAAGGAAGT
FOXF2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	16	29	+	11.9778	4.48e-05	1	CTTGAGTAAACAAA
FOXF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	24	37	-	11.9778	4.48e-05	1	CTTGAGTAAACAAA
FOXF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	24	37	-	11.9778	4.48e-05	1	CTTGAGTAAACAAA
FOXF2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	78	91	+	11.9778	4.48e-05	1	CTTGAGTAAACAAA
FOXF2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	86	99	-	11.9778	4.48e-05	1	CTTGAGTAAACAAA
BATF3	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	62	75	+	2.54545	4.48e-05	0.171	GTGTGACGTCATGC
BATF3	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	67	80	+	2.54545	4.48e-05	0.171	GTGTGACGTCATGC
BATF3	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	35	48	-	2.54545	4.48e-05	0.171	GTGTGACGTCATGC
BATF3	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	40	53	-	2.54545	4.48e-05	0.171	GTGTGACGTCATGC
NFAT5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	41	50	-	11.5806	4.48e-05	1	AATTTCCATA
NFAT5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	41	50	-	11.5806	4.48e-05	1	AATTTCCATA
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	41	50	-	11.5806	4.48e-05	1	AATTTCCATA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	-	11.7857	4.48e-05	0.0857	TGCCCTCCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	22	-	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	22	-	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	18	29	-	11.8727	4.48e-05	0.055	CCCCCGCCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	18	29	-	11.8727	4.48e-05	0.055	CCCCCGCCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	+	11.8727	4.48e-05	0.055	AGCCCTACGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	+	11.8727	4.48e-05	0.055	AGCCCTACGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	50	+	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	50	+	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	40	-	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	-	11.8727	4.48e-05	0.055	CGCCGTCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	-	11.8727	4.48e-05	0.055	CGCCGTCGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	+	11.8727	4.48e-05	0.055	CGCCGTCGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	74	+	11.8727	4.48e-05	0.055	CGCCCCCGGGGC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	-	11.8727	4.48e-05	0.055	AGCCCTACGGCG
ESR1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	24	40	-	1.48485	4.48e-05	0.514	GCGGGCATCGTGAGCTG
ESR1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	75	91	+	1.48485	4.48e-05	0.514	GCGGGCATCGTGAGCTG
EGR1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	40	53	+	11.1346	4.48e-05	0.0197	CCCTCTCTCCCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	43	56	-	11.1346	4.48e-05	0.0197	CTTCCTCCCCTGCA
EGR1	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	59	72	+	11.1346	4.48e-05	0.0197	CTTCCTCCCCTGCA
EGR1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	62	75	-	11.1346	4.48e-05	0.0197	CCCTCTCTCCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	67	80	-	11.1346	4.48e-05	0.0197	GTTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	67	80	-	11.1346	4.48e-05	0.0197	GTTCCTCCTCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	67	80	-	11.1346	4.48e-05	0.0197	GTTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	67	80	-	11.1346	4.48e-05	0.0197	GTTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	82	95	+	11.1346	4.48e-05	0.0197	TCGCCGCCGCCAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	82	95	+	11.1346	4.48e-05	0.0197	TCGCCGCCGCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	82	95	+	11.1346	4.48e-05	0.0197	TCGCCGCCGCCAGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	82	95	+	11.1346	4.48e-05	0.0197	TCGCCGCCGCCAGC
ETV3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	11.7324	4.48e-05	0.12	AGCGGAAGTA
Rxra	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	99	112	+	4.39024	4.48e-05	0.414	GGGTTGGAAGGTCG
Rfx1	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	28	41	+	10.9483	4.48e-05	0.229	CTGGCCTTGACAAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	23	33	+	11.7885	4.48e-05	0.0129	GCCCCACCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	23	33	+	11.7885	4.48e-05	0.0129	GCCCCACCCTG
SP1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	43	53	-	11.7885	4.48e-05	0.0129	GCCCCACCCTG
SP1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	62	72	+	11.7885	4.48e-05	0.0129	GCCCCACCCTG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	18	+	12.5714	4.48e-05	0.139	GGCAGGTGGAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	18	+	12.5714	4.48e-05	0.139	GGCAGGTGGAG
Myog	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	20	+	12.5714	4.48e-05	0.139	CGCAGCTGCCA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	95	105	-	12.5714	4.48e-05	0.139	CGCAGCTGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	42	56	-	11.4595	4.48e-05	0.176	CTGGAAGACAGGGCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	19	38	+	5.04587	4.48e-05	0.0555	CCACACCACAACCTGCCCCT
RREB1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	80	99	+	5.04587	4.48e-05	0.0555	AAACCCGCCACACCACACGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	8	22	-	9.40984	4.48e-05	0.0565	CGCCCCGCCCCTCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	8	22	-	9.40984	4.48e-05	0.0565	CGCCCCGCCCCTCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	26	40	+	9.40984	4.48e-05	0.0565	AGCCCCACCCTCACA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	26	40	+	9.40984	4.48e-05	0.0565	AGCCCCACCCTCACA
Klf12	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	55	69	+	9.40984	4.48e-05	0.0565	CCCCACGCCCTCCCA
Klf12	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	46	60	-	9.40984	4.48e-05	0.0565	CCCCACGCCCTCCCA
Klf12	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	75	89	-	9.40984	4.48e-05	0.0565	AGCCCCACCCTCACA
Klf12	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	93	107	+	9.40984	4.48e-05	0.0565	CGCCCCGCCCCTCTG
Stat4	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	70	83	-	12.069	4.49e-05	0.258	CTGCCAGGAACACA
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	32	-	11.617	4.49e-05	0.32	TCGGGTGACGTCAGG
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	83	97	+	11.617	4.49e-05	0.32	TCGGGTGACGTCAGG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	2	22	-	9.96774	4.49e-05	0.173	CCATTCTTTCCCTTTCCCACA
IRF1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	61	81	-	9.96774	4.49e-05	0.173	CTGCGCTTCCGGTTTCCGGGT
POU3F1	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	11	22	-	11.7229	4.49e-05	1	GTATGCAAAATA
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.1.0	75	85	-	11.8621	4.49e-05	0.241	CACTGTGGCTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.0.0	75	85	-	11.8621	4.49e-05	0.241	CACTGTGGCTT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	60	70	-	12.0816	4.49e-05	0.198	GGCTGAGTCAG
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	69	82	-	7.41463	4.49e-05	0.5	TCTGCAGCCGCCGC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	69	82	-	7.41463	4.49e-05	0.5	TCTGCAGCCGCCGC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	69	82	-	7.41463	4.49e-05	0.5	TCTGCAGCCGCCGC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	69	82	-	7.41463	4.49e-05	0.5	TCTGCAGCCGCCGC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	69	82	-	7.41463	4.49e-05	0.5	TCTGCGCTCGGCAT
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	69	82	-	7.41463	4.49e-05	0.5	TCTGCGCTCGGCAT
MAFG	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	8	28	+	10.5918	4.49e-05	0.931	TAACCGCTGAGACTGCTGTTC
MAFG	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	87	107	-	10.5918	4.49e-05	0.931	TAACCGCTGAGACTGCTGTTC
EGR4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	57	72	+	11.0182	4.49e-05	0.0374	TCCCGCGCGCGCACAA
EGR4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	43	58	-	11.0182	4.49e-05	0.0374	TCCCGCGCGCGCACAA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	66	81	+	11.0182	4.49e-05	0.0374	CTCTGCCCACACATCT
SP2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	8	22	+	11.2759	4.49e-05	0.0113	ATCCCTCCCCGCGCG
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	14	28	+	11.2759	4.49e-05	0.0113	TCTCCACCCCCTGCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	31	45	+	11.2759	4.49e-05	0.0113	CCTCCTCCCTCCCCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	40	54	+	11.2759	4.49e-05	0.0113	TGCCCTCCTCCCCTT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	40	54	+	11.2759	4.49e-05	0.0113	TGCCCTCCTCCCCTT
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	59	73	+	11.2759	4.49e-05	0.0113	CACCCGCCTCTCTGC
SP2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	73	87	+	11.2759	4.49e-05	0.0113	CTCCCTCCTTCCTGC
SP2	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	78	92	+	11.2759	4.49e-05	0.0113	GCTCCGCCCTACGAC
SP2	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	23	37	-	11.2759	4.49e-05	0.0113	GCTCCGCCCTACGAC
SP2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	28	42	-	11.2759	4.49e-05	0.0113	CTCCCTCCTTCCTGC
SP2	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	70	84	-	11.2759	4.49e-05	0.0113	CCTCCTCCCTCCCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	93	107	-	11.2759	4.49e-05	0.0113	ATCCCTCCCCGCGCG
Hic1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	32	40	+	11.7885	4.49e-05	0.516	ATGCCAGCT
Hic1	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	48	56	+	11.7885	4.49e-05	0.516	ATGCCAGCT
Hic1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	71	79	+	11.7885	4.49e-05	0.516	ATGCCAGCT
Hic1	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	71	79	-	11.7885	4.49e-05	0.516	ATGCCAGCT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	10	28	+	9.63934	4.49e-05	0.114	CGCCCAGCCGGGGCCACCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	10	28	+	9.63934	4.49e-05	0.114	CGCCCAGCCGGGGCCACCG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	13	31	-	9.63934	4.49e-05	0.114	TCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	13	31	-	9.63934	4.49e-05	0.114	TCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	42	60	-	9.63934	4.49e-05	0.114	TGAACACCAGAGGTAGAAG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	48	66	-	9.63934	4.49e-05	0.114	TCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	48	66	-	9.63934	4.49e-05	0.114	TCCCCAGCAGGGGAAAAAA
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	33	42	+	11.7959	4.49e-05	0.8	TTAAGGTCAT
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	33	42	+	11.7959	4.49e-05	0.8	TTAAGGTCAT
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	53	62	+	11.7959	4.49e-05	0.8	TTAAGGTCAT
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	53	62	+	11.7959	4.49e-05	0.8	TTAAGGTCAT
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	46	60	-	11.1818	4.49e-05	0.312	AAGTAGGGAGAGTGA
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	46	60	-	11.1818	4.49e-05	0.312	AAGTAGGGAGAGTGA
RARA(var.2)	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	5	21	+	4.55738	4.49e-05	0.563	AGGTGAGAGGGAGGTGA
SOX8	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	51	66	-	-10.5303	4.49e-05	1	CACAATATTCACTGAT
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	67	80	+	6.86735	4.49e-05	0.0714	GAGGGCAAAGGGTC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	67	80	+	6.86735	4.49e-05	0.0714	GAGGGCAAAGGGTC
NFKB2	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	37	49	-	9.45455	4.49e-05	0.258	AGGGGCCGCCCCT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	42	51	-	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	42	51	-	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	42	51	-	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	42	51	-	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Klf4	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	64	73	+	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	81	90	-	11.6939	4.49e-05	0.0192	TGGGTGGGCC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	64	73	+	12.6857	4.49e-05	0.754	GCTTTGTTTT
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	64	73	+	12.6857	4.49e-05	0.754	GCTTTGTTTT
Sox6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	64	73	+	12.6857	4.49e-05	0.754	GCTTTGTTTT
ERF	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	11.7429	4.49e-05	0.0932	AGCGGAAGTA
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	84	97	+	12.0577	4.49e-05	0.22	GCTGTGTGACTCAG
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	9	18	+	11.367	4.49e-05	0.0548	GCCCCCCCTA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	71	80	+	11.367	4.49e-05	0.0548	GCCCCCCCTA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	29	42	+	9.60606	4.49e-05	0.336	TGGGTGAAAGGGCG
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	74	89	+	3.13793	4.49e-05	0.31	TTCCCAGCATGCAGAC
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	58	73	-	3.13793	4.49e-05	0.31	TTCCCAGCATGCAGAC
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	29	38	+	10.2448	4.49e-05	0.0861	GACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	29	38	+	10.2448	4.49e-05	0.0861	GACACGCGCG
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	25	34	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	31	40	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	31	40	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	35	44	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	38	47	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	45	54	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	59	68	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	70	79	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	75	84	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	102	111	-	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	4	13	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	13	22	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	19	28	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	25	34	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	31	40	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	35	44	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	35	44	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	36	45	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	36	45	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	55	64	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	75	84	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	79	88	+	11.9796	4.49e-05	0.0184	TCTCCGCCCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	71	85	+	11.4423	4.49e-05	0.426	AGGTGACACAGGCCA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	71	85	+	11.4423	4.49e-05	0.426	AGGTGACACAGGCCA
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	71	85	+	11.4423	4.49e-05	0.426	AGGTGACACAGGCCA
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	71	85	+	11.4423	4.49e-05	0.426	AGGTGACACAGGCCA
ELK4	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	59	-	11.9818	4.49e-05	0.0574	GTGTTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	56	66	+	11.9818	4.49e-05	0.0574	GTGTTTCCGGC
EMX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	11.5745	4.5e-05	1	TCTAATTAGG
USF1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	106	-	11.7959	4.5e-05	0.164	GCCACGTGGCG
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	19	+	11.7959	4.5e-05	0.164	GCCACGTGGCG
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	19	+	11.7959	4.5e-05	0.164	GCCACGTGGCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	61	71	-	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	82	92	-	11.8966	4.5e-05	0.0458	CGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	82	92	-	11.8966	4.5e-05	0.0458	CGGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	82	92	-	11.8966	4.5e-05	0.0458	CGGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	99	109	-	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	6	16	+	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	6	16	+	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	6	16	+	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	6	16	+	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
E2F4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	23	33	+	11.8966	4.5e-05	0.0458	CGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	37	47	+	11.8966	4.5e-05	0.0458	GCGCGCGAGGC
NOTO	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	11.32	4.5e-05	1	TCTAATTAGG
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	12.0769	4.5e-05	0.131	GCCACGTGGC
TFEB	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	12.0769	4.5e-05	0.131	GCCACGTGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	92	109	+	-11.6711	4.5e-05	0.0417	AGATGGAGGGAGGGATGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	92	109	+	-11.6711	4.5e-05	0.0417	AGATGGAGGGAGGGATGG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.1	19	35	+	6.96364	4.5e-05	0.586	CGTCCCGGCTGGAAGCC
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.0	19	35	+	6.96364	4.5e-05	0.586	CGTCCCGGCTGGAAGCC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.0.0	19	35	+	6.96364	4.5e-05	0.586	CGTCCCGGCTGGAAGCC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	59	75	+	6.96364	4.5e-05	0.586	CGTCCCGGCTGGAAGCC
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	59	75	+	6.96364	4.5e-05	0.586	CGTCCCGGCTGGAAGCC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	2	16	-	10.3143	4.5e-05	0.119	AGAGGTTAGGGGTAG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	2	16	-	10.3143	4.5e-05	0.119	AGAGGTTAGGGGTAG
NR2C2	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	99	113	+	10.3143	4.5e-05	0.119	AGAGGTTAGGGGTAG
FOXP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	47	57	-	12.5606	4.5e-05	1	AAATAAACAGC
FOXP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	47	57	-	12.5606	4.5e-05	1	AAATAAACAGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	13	23	-	11.3103	4.5e-05	0.0175	TCCACCCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	13	23	-	11.3103	4.5e-05	0.0175	TCCACCCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	13	23	-	11.3103	4.5e-05	0.0175	TCCACCCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	29	39	-	11.3103	4.5e-05	0.0175	TCCACCCCCAC
CEBPD	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	75	84	-	12.0385	4.5e-05	0.805	GTTGCACAAT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	35	48	+	7.57447	4.5e-05	0.0994	TCCCGCCCGCAGAG
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	54	-	12.0328	4.5e-05	0.222	GGGCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	54	-	12.0328	4.5e-05	0.222	GGGCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	34	+	12.0328	4.5e-05	0.222	GGGCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	34	+	12.0328	4.5e-05	0.222	GGGCACGTGG
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	56	66	-	11.7121	4.5e-05	0.0469	GATCCCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	56	66	-	11.7121	4.5e-05	0.0469	GATCCCACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	56	66	-	11.7121	4.5e-05	0.0469	GATCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	56	66	-	11.7121	4.5e-05	0.0469	GATCCCACCCA
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	96	113	-	7.67347	4.5e-05	0.979	GTCATGCTCCATCATGTG
TP53	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	96	113	-	7.67347	4.5e-05	0.979	GTCATGCTCCATCATGTG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	16	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	16	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	2	13	-	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	27	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	27	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	33	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	33	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	20	31	-	11.5	4.5e-05	0.0286	CCCACACCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	20	31	-	11.5	4.5e-05	0.0286	CCCACACCCCGT
SP8	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	43	54	-	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
SP8	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	72	+	11.5	4.5e-05	0.0286	GCCCCTCCCAGC
FLI1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	11.8085	4.5e-05	0.108	ACCGGAAGAG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	25	34	-	11.8085	4.5e-05	0.108	TCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	11.8085	4.5e-05	0.108	ACCGGAAGAG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	62	71	-	11.8085	4.5e-05	0.108	TCCGGAAACG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	-	11.3115	4.5e-05	0.0586	GGCCGCCCGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	38	50	-	11.3115	4.5e-05	0.0586	TCCCCTCATGGGA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	61	73	+	11.3115	4.5e-05	0.0586	TCCCCTCATGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	+	11.3115	4.5e-05	0.0586	CCCCCTCTGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	+	11.3115	4.5e-05	0.0586	CCCCCTCTGGGGA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	+	11.3115	4.5e-05	0.0586	GGCCGCCCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	-	11.3115	4.5e-05	0.0586	TCCCGTGAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	-	11.3115	4.5e-05	0.0586	TCCCGTGAAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	-	11.3115	4.5e-05	0.0586	TCCCGTGAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	-	11.3115	4.5e-05	0.0586	TCCCCAGAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	-	11.3115	4.5e-05	0.0586	TCCCCAGAGGGGG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	30	41	+	11.1148	4.5e-05	0.122	CACCCGGAACTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	30	41	+	11.1148	4.5e-05	0.122	CACCCGGAACTC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	30	41	+	11.1148	4.5e-05	0.122	CACCCGGAACTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	30	41	+	11.1148	4.5e-05	0.122	CACCCGGAACTC
EHF	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	42	53	+	11.1148	4.5e-05	0.122	TATCCGGAAGAA
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	10.4727	4.5e-05	0.232	GTCACGTGGC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	10.4727	4.5e-05	0.232	GTCACGTGGC
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	63	78	-	5.44262	4.5e-05	0.833	CGGTTCGCGGAGGGCG
EVX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.5094	4.5e-05	1	GCCAATTAGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	14	28	+	11.1273	4.5e-05	0.109	GCACACCCACTGAGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	14	28	+	11.1273	4.5e-05	0.109	GCACACCCACTGAGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	14	28	+	11.1273	4.5e-05	0.109	GCACACCCACTGAGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	14	28	+	11.1273	4.5e-05	0.109	GCACACCCACTGAGA
ZIC4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	42	56	+	11.1273	4.5e-05	0.109	GCCTCCCTGCGGTCC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	43	57	-	11.1273	4.5e-05	0.109	GCCTCCCTGCGGTCC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	58	72	+	11.1273	4.5e-05	0.109	GCCTCCCTGCGGTCC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	59	73	-	11.1273	4.5e-05	0.109	GCCTCCCTGCGGTCC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	3	16	+	9.2459	4.5e-05	0.185	GGCCCCCCGCCCCC
SPDEF	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	18	28	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	21	31	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	21	31	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	22	32	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	57	67	+	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	83	93	-	11.2545	4.5e-05	0.225	AGCAGGATGTG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	87	97	-	11.2545	4.5e-05	0.225	AGCAGGATGTG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	32	42	+	11.9091	4.5e-05	0.176	ATGTGACTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	30	40	-	11.9091	4.5e-05	0.176	ATGTGACTCAC
SOX21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	85	99	-	3	4.5e-05	1	AGCAATGTCAAGGTC
CEBPB	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	39	48	+	11.96	4.5e-05	0.821	CTGGCGCAAC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	46	58	-	3.7551	4.5e-05	0.24	GGGAGGTTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	46	58	-	3.7551	4.5e-05	0.24	GGGAGGTTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	32	44	+	3.7551	4.5e-05	0.24	CTGGGGTTCCCCC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	32	44	+	3.7551	4.5e-05	0.24	CTGGGGTTCCCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	22	31	-	11.449	4.5e-05	0.213	TGGAGTTCCC
PAX5	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	22	40	+	11.2581	4.51e-05	0.147	GCGGGCCGCGGAGTGAGGC
PAX5	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	75	93	-	11.2581	4.51e-05	0.147	GCGGGCCGCGGAGTGAGGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	39	52	+	9.84483	4.51e-05	0.0302	AGGTCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	39	52	+	9.84483	4.51e-05	0.0302	AGGTCCGCCCACCT
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	9	20	+	11.7419	4.51e-05	0.281	ACGCCCACCCCA
HES7	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	48	59	+	4.7931	4.51e-05	0.189	TAGCACGTGACT
HES7	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	56	67	-	4.7931	4.51e-05	0.189	TAGCACGTGACT
RUNX2	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	58	66	+	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	106	114	+	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	106	114	+	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	106	114	+	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	106	114	+	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	24	32	-	12.0962	4.51e-05	0.442	TAACCGCAC
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	25	33	-	12.0962	4.51e-05	0.442	TAACCGCAC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	99	109	-	12.0364	4.51e-05	0.0517	TGCCCCAAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	99	109	-	12.0364	4.51e-05	0.0517	TGCCCCAAGCT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	16	36	-	10.4286	4.51e-05	0.0157	GAGAGCGGGGAGGGGGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	16	36	-	10.4286	4.51e-05	0.0157	GAGAGCGGGGAGGGGGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	16	36	-	10.4286	4.51e-05	0.0157	GAGAGCGGGGAGGGGGGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	16	36	-	10.4286	4.51e-05	0.0157	GAGAGCGGGGAGGGGGGGAGC
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	25	45	-	10.4286	4.51e-05	0.0157	AGAGGGAGGGAAGGAGAAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	55	75	-	10.4286	4.51e-05	0.0157	CAGGAAGGAGGGAAGGGGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	55	75	-	10.4286	4.51e-05	0.0157	CAGGAAGGAGGGAAGGGGTGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	66	86	-	10.4286	4.51e-05	0.0157	AGAGGAAGCACAAGAGGAAAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	66	86	-	10.4286	4.51e-05	0.0157	AGAGGAAGCACAAGAGGAAAC
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	70	90	-	10.4286	4.51e-05	0.0157	AGAGGAAAAAAAAAAAAAAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	70	90	-	10.4286	4.51e-05	0.0157	AGAGGGAGGCCGGGAGGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	92	112	-	10.4286	4.51e-05	0.0157	AGAGGGAGGGAAGGAGAAAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	3	23	+	10.4286	4.51e-05	0.0157	AGAGGGAGGGAAGGAGAAAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	25	45	+	10.4286	4.51e-05	0.0157	AGAGGGAGGCCGGGAGGAGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	25	45	+	10.4286	4.51e-05	0.0157	AGAGGAAAAAAAAAAAAAAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	67	87	+	10.4286	4.51e-05	0.0157	AGAGGAAGCACAAGAGGAAAC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	70	90	+	10.4286	4.51e-05	0.0157	AGAGGGAGGGAAGGAGAAAGG
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	66	78	-	11.541	4.51e-05	0.359	CAGTCTCCCACGC
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	37	49	+	11.541	4.51e-05	0.359	CAGTCTCCCACGC
ZEB1	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	2	10	+	12.5091	4.51e-05	0.37	CTACACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	86	94	-	12.5091	4.51e-05	0.37	CTACACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	86	94	-	12.5091	4.51e-05	0.37	CTACACCTG
NFYA	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	14	31	-	10.1463	4.51e-05	0.139	CTCGCTCTAATTGGCCTC
NFYA	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	32	49	+	10.1463	4.51e-05	0.139	AAAGTGCTGATTTGCTGA
NFYA	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	42	59	-	10.1463	4.51e-05	0.139	AAAGTGCTGATTTGCTGA
MTF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	28	41	+	7.40244	4.51e-05	0.5	TGCGCACGCGGCAG
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	24	37	-	7.40244	4.51e-05	0.5	TGCGCACGCGGCAG
MTF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	24	37	-	7.40244	4.51e-05	0.5	TGCGCACGCGGCAG
BATF::JUN	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	13	23	+	12.0962	4.51e-05	0.334	AGGCTGAGTCA
BATF::JUN	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	13	23	+	12.0962	4.51e-05	0.334	AGGCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	5	15	-	12.0962	4.51e-05	0.334	AAATTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	5	15	-	12.0962	4.51e-05	0.334	AAATTGACTCA
BATF::JUN	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	93	103	-	12.0962	4.51e-05	0.334	AGGCTGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	104	114	+	12.0962	4.51e-05	0.334	AGGCTGAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	78	90	-	9.41379	4.51e-05	0.144	GAGGAGGAAGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	78	90	-	9.41379	4.51e-05	0.144	GAGGAGGAAGTGG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	16	35	-	5.02752	4.51e-05	0.0555	ACCCCTCCCCCCAGCCCCCG
RREB1	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	99	+	5.02752	4.51e-05	0.0555	ACCCCTCCCCCCAGCCCCCG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	86	97	+	10.1475	4.51e-05	0.0982	TCCCCGGAAGCT
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	46	60	-	11.0862	4.51e-05	0.385	CAGCTCAAGGGCGCC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	46	60	-	11.0862	4.51e-05	0.385	CAGCTCAAGGGCGCC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	46	60	-	11.0862	4.51e-05	0.385	CAGCTCAAGGGCGCC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	46	60	-	11.0862	4.51e-05	0.385	CAGCTCAAGGGCGCC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	87	96	+	11.8714	4.51e-05	0.195	AACTGCTGCT
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	27	37	-	11.5918	4.51e-05	0.531	GGTGCTGGTGC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	27	37	-	11.5918	4.51e-05	0.531	GGTGCTGGTGC
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	72	86	-	-3.61429	4.51e-05	0.876	AGGGACTGAAGGTCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	72	86	-	-3.61429	4.51e-05	0.876	AGGGACTGAAGGTCA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	15	29	-	8.52632	4.51e-05	0.224	GCGCTGAGTCACCGG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	15	29	-	8.52632	4.51e-05	0.224	GCGCTGAGTCACCGG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	94	108	+	8.52632	4.51e-05	0.224	GCGCTGAGTCACCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	94	108	+	8.52632	4.51e-05	0.224	GCGCTGAGTCACCGG
ESRRB	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	44	54	-	9.5	4.51e-05	1	TCAAGCTCATT
ESRRB	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	61	71	+	9.5	4.51e-05	1	TCAAGCTCATT
HINFP	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	47	58	-	11.5	4.51e-05	0.109	CAGCCTCCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	53	64	-	11.5	4.51e-05	0.109	CCGCCTCCGCGA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	53	64	-	11.5	4.51e-05	0.109	CCGCCTCCGCGA
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	53	64	-	11.5	4.51e-05	0.109	CCGCCTCCGCGA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	53	64	-	11.5	4.51e-05	0.109	CCGCCTCCGCGA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	56	67	-	11.5	4.51e-05	0.109	CTGCGTCCCCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	64	75	-	11.5	4.51e-05	0.109	CTGCGTCCCCGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	89	100	+	11.5	4.51e-05	0.109	CAGCCTCCGCTC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	-	11.7755	4.51e-05	0.0857	CCCCTCCGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	-	11.7755	4.51e-05	0.0857	TGCCTGCCGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	-	11.7755	4.51e-05	0.0857	TGCCTGCCGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	-	11.7755	4.51e-05	0.0857	TGCCTGCCGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	-	11.7755	4.51e-05	0.0857	TGCCTGCCGGCA
IRF1	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	53	73	+	9.95161	4.52e-05	0.173	TTCTACTATCACTTTCATTTT
IRF1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	69	89	-	9.95161	4.52e-05	0.173	TCCTCCTCTCACTTCCTCCTC
NKX2-3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	50	59	-	12.0769	4.52e-05	1	CGCACTTAAA
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	50	59	-	12.0769	4.52e-05	1	CGCACTTAAA
Spz1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	27	37	+	11.8091	4.52e-05	0.757	ACGGTTACATC
Spz1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	27	37	+	11.8091	4.52e-05	0.757	ACGGTTACATC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	4	13	+	10.0323	4.52e-05	0.0455	GGCGCGCGAA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	11	20	+	10.0323	4.52e-05	0.0455	TTCGCGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	4	13	-	10.0323	4.52e-05	0.0455	TTCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	11	20	-	10.0323	4.52e-05	0.0455	GGCGCGCGAA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	95	104	+	10.0323	4.52e-05	0.0455	GGCGCGCGAA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	95	104	+	10.0323	4.52e-05	0.0455	GGCGCGCGAA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	95	104	-	10.0323	4.52e-05	0.0455	TTCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	95	104	-	10.0323	4.52e-05	0.0455	TTCGCGCGCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	35	45	+	11.2931	4.52e-05	0.0175	GCCCCGCCACC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	33	43	-	11.2931	4.52e-05	0.0175	GCCCCGCCACC
Rfx1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	74	87	+	10.931	4.52e-05	0.229	ACCTCCACAGCAAC
GATA1::TAL1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	59	76	+	11.6364	4.52e-05	0.915	CCAATCAGAGCGCGCCAG
GATA1::TAL1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	79	96	+	11.6364	4.52e-05	0.915	CCAATCAGAGCGCGCCAG
GATA1::TAL1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	19	36	-	11.6364	4.52e-05	0.915	CCAATCAGAGCGCGCCAG
GATA1::TAL1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	39	56	-	11.6364	4.52e-05	0.915	CCAATCAGAGCGCGCCAG
Rxra	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	56	-	4.36585	4.52e-05	0.414	GAGGGTAAAGGTCT
Rxra	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	59	72	+	4.36585	4.52e-05	0.414	GAGGGTAAAGGTCT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	36	46	-	11.8909	4.52e-05	0.0682	AGCCCGAGGGA
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	61	75	+	10.5152	4.52e-05	0.298	ATAGTTCCTGTTCCC
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	72	86	+	10.5152	4.52e-05	0.298	CTCCTTTCACTTTCC
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	41	54	+	7.72368	4.52e-05	0.56	GTCACAGCTGGCGA
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	41	54	+	7.72368	4.52e-05	0.56	GTCACAGCTGGCGA
LBX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.678	4.52e-05	1	CCTAATTAGA
POU1F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	13	26	+	11.2586	4.52e-05	1	AATATGTAAATCTC
POU1F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	13	26	+	11.2586	4.52e-05	1	AATATGTAAATCTC
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	24	33	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	34	43	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	34	43	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	38	47	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	52	61	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	52	61	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	52	61	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	54	63	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	68	77	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	82	91	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	82	91	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	83	92	-	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	98	107	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	105	114	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	105	114	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	105	114	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	105	114	+	11.6061	4.52e-05	0.165	GGAGGCGGAA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	56	66	+	12.0204	4.52e-05	0.198	GGCTGAGTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	23	33	-	12.0204	4.52e-05	0.198	GGCTGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	73	83	-	12.0204	4.52e-05	0.198	GGCTGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	73	83	-	12.0204	4.52e-05	0.198	GGCTGAGTCAT
ATF4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	11	23	-	10.6721	4.52e-05	0.532	GTCTGATGTAACT
ATF4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	92	104	+	10.6721	4.52e-05	0.532	GTCTGATGTAACT
SP4	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	13	29	+	5.27273	4.52e-05	0.0247	CTGGACCCGCGCCCAAT
SP4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	32	48	+	5.27273	4.52e-05	0.0247	CCCGCCCCGCCCCGAAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	34	50	+	5.27273	4.52e-05	0.0247	CCGCACCCGCCCCCCTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	34	50	+	5.27273	4.52e-05	0.0247	CCGCACCCGCCCCCCTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	34	50	+	5.27273	4.52e-05	0.0247	CCGCACCCGCCCCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	34	50	+	5.27273	4.52e-05	0.0247	CCGCACCCGCCCCCCTC
SP4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	67	83	-	5.27273	4.52e-05	0.0247	CCCGCCCCGCCCCGAAG
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	59	75	-	11.0658	4.53e-05	0.614	ACCGTGACGTAACACGT
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	-	12.1186	4.53e-05	1	TGTGACGTAACA
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	42	56	+	11.5957	4.53e-05	0.32	AGGGGTGAGGTAAGA
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	30	44	-	11.5957	4.53e-05	0.32	GCCTATGACGTCATT
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	56	-	11.5957	4.53e-05	0.32	GATGATGACGTCAAA
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	59	73	+	11.5957	4.53e-05	0.32	GATGATGACGTCAAA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	71	85	+	11.5957	4.53e-05	0.32	GCCTATGACGTCATT
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	63	77	-	11.5957	4.53e-05	0.32	AGGGGTGAGGTAAGA
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	69	79	-	12.1552	4.53e-05	0.056	AAGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	69	79	-	12.1552	4.53e-05	0.056	AAGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	69	79	-	12.1552	4.53e-05	0.056	AAGAGGGAAGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	69	79	-	12.1552	4.53e-05	0.056	AAGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	69	79	-	12.1552	4.53e-05	0.056	AAGAGGGAAGG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	33	44	+	11.0306	4.53e-05	0.17	GGCCAGGGGTTT
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	33	44	+	11.0306	4.53e-05	0.17	GGCCAGGGGTTT
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	68	79	-	11.0306	4.53e-05	0.17	GGCCAGGGGTTT
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	68	79	-	11.0306	4.53e-05	0.17	GGCCAGGGGTTT
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	22	34	+	11.4286	4.53e-05	0.301	CTAGTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	22	34	+	11.4286	4.53e-05	0.301	CTAGTGATGCAAT
JUN	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	31	43	+	11.4286	4.53e-05	0.301	GATATGATGTAAG
JUN	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	72	84	-	11.4286	4.53e-05	0.301	GATATGATGTAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	63	80	-	-11.6974	4.53e-05	0.0419	TGAGGGAGGAAGGGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	63	80	-	-11.6974	4.53e-05	0.0419	TGAGGGAGGAAGGGAAGG
SP2	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	2	16	+	11.2586	4.53e-05	0.0113	CCCCCTCCTCGCCCA
SP2	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	3	17	+	11.2586	4.53e-05	0.0113	CTCCCGCCTCACCTA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	22	36	+	11.2586	4.53e-05	0.0113	GGCCCTCTCCCCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	22	36	+	11.2586	4.53e-05	0.0113	GGCCCTCTCCCCCGC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	98	112	-	11.2586	4.53e-05	0.0113	CTCCCGCCTCACCTA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	98	112	-	11.2586	4.53e-05	0.0113	CTCCCGCCTCACCTA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	98	112	-	11.2586	4.53e-05	0.0113	CTCCCGCCTCACCTA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	98	112	-	11.2586	4.53e-05	0.0113	CTCCCGCCTCACCTA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	+	11.2951	4.53e-05	0.0586	TCCCGCGAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	+	11.2951	4.53e-05	0.0586	TCCCGCGAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	+	11.2951	4.53e-05	0.0586	TCCCGCGAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	+	11.2951	4.53e-05	0.0586	TCCCGCGAGGGGG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	109	+	11.2951	4.53e-05	0.0586	CGCCGCCGGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	98	110	+	11.2951	4.53e-05	0.0586	TGCCCGGGTGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	98	110	+	11.2951	4.53e-05	0.0586	TGCCCGGGTGGCC
Rarg(var.2)	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	21	37	+	-3.8	4.53e-05	1	GGGGTCAGAGAGGGGCA
Rarg(var.2)	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	78	94	-	-3.8	4.53e-05	1	GGGGTCAGAGAGGGGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	28	41	+	11.1154	4.53e-05	0.0198	GGCCCACCCCTTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	35	48	+	11.1154	4.53e-05	0.0198	GCTCCTCCCACAGG
EGR1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	24	37	-	11.1154	4.53e-05	0.0198	GCCTCTCCCACGGC
EGR1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	44	57	+	11.1154	4.53e-05	0.0198	CCGCCGCCTTCACC
EGR1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	58	71	-	11.1154	4.53e-05	0.0198	CCGCCGCCTTCACC
EGR1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	78	91	+	11.1154	4.53e-05	0.0198	GCCTCTCCCACGGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	74	87	-	11.1154	4.53e-05	0.0198	GGCCCACCCCTTCC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr10:9012053..9012167,+__144.1.0.0	29	43	-	11.1636	4.53e-05	0.312	TGGAAAAGAAAGTTT
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	+	11.9423	4.53e-05	0.0744	GGCCTCGGGCT
SOX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	29	43	-	2.97959	4.53e-05	1	AACAATATCATTGCA
SOX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	29	43	-	2.97959	4.53e-05	1	AACAATATCATTGCA
GSC2	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	86	95	-	11.1186	4.53e-05	1	CCTAATCCAC
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	18	29	+	8.18367	4.53e-05	0.158	GATGACCTCATC
NFYA	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	15	32	-	10.1341	4.53e-05	0.139	GCCGCTGGGATTGGTCCG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	83	100	+	10.1341	4.53e-05	0.139	GCCGCTGGGATTGGTCCG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	83	100	+	10.1341	4.53e-05	0.139	GCCGCTGGGATTGGTCCG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	43	-	11.2364	4.53e-05	0.225	TCCCGGAAGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	43	56	+	7.55319	4.53e-05	0.0994	CCACCCCCGCTGCC
ZIC1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	59	72	-	7.55319	4.53e-05	0.0994	CCACCCCCGCTGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	+	11.8545	4.53e-05	0.055	GCCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	-	11.8545	4.53e-05	0.055	GCCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	-	11.8545	4.53e-05	0.055	GCCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	+	11.8545	4.53e-05	0.055	GCCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	+	11.8545	4.53e-05	0.055	GCCCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	51	-	11.8545	4.53e-05	0.055	TGGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	51	-	11.8545	4.53e-05	0.055	TGGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	51	-	11.8545	4.53e-05	0.055	TGGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	51	-	11.8545	4.53e-05	0.055	TGGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	51	-	11.8545	4.53e-05	0.055	TGGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	69	80	+	11.8545	4.53e-05	0.055	CCCCCCTGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	69	80	+	11.8545	4.53e-05	0.055	CCCCCCTGGGCG
TCF4	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	-	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	-	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	-	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	+	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	+	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	+	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	+	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	+	12.7755	4.53e-05	0.422	GGCACCTGCG
TCF4	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	+	12.7755	4.53e-05	0.422	GGCACCTGCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	62	75	+	9.22951	4.53e-05	0.185	CGCCCCCTACGTTC
EGR4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	15	30	+	11	4.53e-05	0.0374	TCCCGCCCCTGCCCCC
EGR4	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	30	45	+	11	4.53e-05	0.0374	CAACACCCAGGCATTC
EGR4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	32	47	+	11	4.53e-05	0.0374	GCCTGCCCGCGCACCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	36	51	-	11	4.53e-05	0.0374	CCCCGCCCCCACCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	36	51	-	11	4.53e-05	0.0374	CCCCGCCCCCACCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	36	51	-	11	4.53e-05	0.0374	CCCCGCCCCCACCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	36	51	-	11	4.53e-05	0.0374	CCCCGCCCCCACCCCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	36	51	-	11	4.53e-05	0.0374	CCCCGCCCCCACCCCT
EGR4	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	38	53	-	11	4.53e-05	0.0374	ACCCGCCCGCCCTTCT
EGR4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	53	68	+	11	4.53e-05	0.0374	TCCCGCCCCTGCCCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	62	77	+	11	4.53e-05	0.0374	ACCCGCCCGCCCTTCT
EGR4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	47	62	-	11	4.53e-05	0.0374	TCCCGCCCCTGCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	63	78	+	11	4.53e-05	0.0374	GCCTGCCCGCGCACCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	63	78	+	11	4.53e-05	0.0374	GCCTGCCCGCGCACCG
EGR4	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	78	93	+	11	4.53e-05	0.0374	CTACTCCCTCCCACAC
EGR4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	68	83	-	11	4.53e-05	0.0374	GCCTGCCCGCGCACCG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	35	48	-	4.38182	4.53e-05	0.173	AGAATGCAGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	35	48	-	4.38182	4.53e-05	0.173	AGAATGCAGAAGCA
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	35	48	-	4.38182	4.53e-05	0.173	AGAATGCAGAAGCA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	35	48	-	4.38182	4.53e-05	0.173	AGAATGCAGAAGCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	31	42	-	11.4868	4.54e-05	0.0288	GACCCACCCACA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	99	111	+	9.42424	4.54e-05	0.258	ACGGGTTTCCCCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	17	31	+	10.6364	4.54e-05	0.287	CAGCGTGACCCGGCC
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	57	71	+	10.6364	4.54e-05	0.287	CCCCCTGACATAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	57	71	+	10.6364	4.54e-05	0.287	CCCCCTGACATAGCA
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr10:9012053..9012167,+__144.1.0.0	90	104	+	10.6364	4.54e-05	0.287	CAGAGTGAGAAGGCA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	57	71	+	9.15714	4.54e-05	0.106	CCTTCCCCGCGGCGC
SP1	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	8	18	-	11.7692	4.54e-05	0.013	GCTCCGCCCTG
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	30	40	+	11.7692	4.54e-05	0.013	GCTCCGCCCTG
SP1	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	38	48	+	11.7692	4.54e-05	0.013	GCTCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	59	69	+	11.7692	4.54e-05	0.013	CTTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	59	69	+	11.7692	4.54e-05	0.013	CTTCCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	99	109	-	11.7692	4.54e-05	0.013	CCTCCACCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	99	109	-	11.7692	4.54e-05	0.013	CCTCCACCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	99	109	-	11.7692	4.54e-05	0.013	CCTCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	99	109	-	11.7692	4.54e-05	0.013	CCTCCACCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	99	109	-	11.7692	4.54e-05	0.013	CCTCCACCTCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	9.23077	4.54e-05	0.165	AACACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	9.23077	4.54e-05	0.165	AACACGTGCC
TFAP4	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	36	45	-	11.8727	4.54e-05	0.655	ATCAGCTGGC
TFAP4	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	54	63	-	11.8727	4.54e-05	0.655	ATCAGCTGGC
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	15	34	-	5.00917	4.54e-05	0.0555	CCCCCCCCGCCCCCCCGCCT
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	81	100	+	5.00917	4.54e-05	0.0555	CCCCCCCCGCCCCCCCGCCT
GSC	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	63	72	+	11.6226	4.54e-05	1	GTTAATCCCA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	16	29	-	6.83673	4.54e-05	0.0714	GAGGCCTGGGGGTG
PLAG1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	57	70	+	6.83673	4.54e-05	0.0714	GTGGGCCTGGCGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	45	58	-	6.83673	4.54e-05	0.0714	GTGGGCCTGGCGGG
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	76	88	-	10.6714	4.54e-05	0.729	ACTCCAGATGCTC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	+	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	47	56	+	10.9138	4.54e-05	0.241	ATCACCTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	47	56	+	10.9138	4.54e-05	0.241	ATCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	47	56	+	10.9138	4.54e-05	0.241	ATCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	47	56	+	10.9138	4.54e-05	0.241	ATCACCTGAG
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	+	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	-	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	+	10.9138	4.54e-05	0.241	ATCATGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	+	10.9138	4.54e-05	0.241	ATCATGTGAC
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	+	9.15596	4.54e-05	0.848	TAACAGCTGTCC
Bcl6	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	85	98	-	11.5161	4.54e-05	0.411	GTTCCTTAAAAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	27	40	-	2.5	4.54e-05	0.172	GGCTTACGTCATCA
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	27	40	-	2.5	4.54e-05	0.172	GGCTTACGTCATCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.7759	4.54e-05	0.112	ACCGGAAGGC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.7759	4.54e-05	0.112	ACCGGAAGGC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.7759	4.54e-05	0.112	ACCGGAAGGC
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	8	22	+	11.4414	4.54e-05	0.176	GTTGGTGAAAGGGAA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	93	107	-	11.4414	4.54e-05	0.176	GTTGGTGAAAGGGAA
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	46	59	+	7.71053	4.54e-05	0.56	CCACCATCTGTTCA
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	46	59	+	7.71053	4.54e-05	0.56	CCACCATCTGTTCA
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	75	88	+	7.71053	4.54e-05	0.56	CAGCCAGCTGCTGC
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	75	88	+	7.71053	4.54e-05	0.56	CAGCCAGCTGCTGC
GRHL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	51	62	+	11.4655	4.54e-05	1	AAAACCAGTATT
GRHL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	51	62	+	11.4655	4.54e-05	1	AAAACCAGTATT
GRHL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	71	82	+	11.4655	4.54e-05	1	AAAACCAGTATT
GRHL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	71	82	+	11.4655	4.54e-05	1	AAAACCAGTATT
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	42	55	-	7.46067	4.54e-05	1	GTAAAGTACGTCAG
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	42	55	-	7.46067	4.54e-05	1	GTAAAGTACGTCAG
RORA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	90	103	+	7.46067	4.54e-05	1	GTAAAGTACGTCAG
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	55	70	-	4.56364	4.54e-05	0.407	GAGCTCGGAGTCCAGA
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	83	98	-	4.56364	4.54e-05	0.407	GAGCTCGGAGTCCAGA
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	29	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	33	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	33	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	65	75	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	65	75	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	83	+	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	21	31	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	31	41	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	32	42	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	48	58	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	48	58	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	84	94	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	84	94	-	11.6341	4.54e-05	0.0187	GCCCCACCCAG
RFX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	+	7.17143	4.54e-05	0.272	AGTTTCCACAGAAACT
RFX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	+	7.17143	4.54e-05	0.272	AGTTTCCACAGAAACT
ZIC4	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	29	43	-	11.1091	4.54e-05	0.109	TGCCGCCCACTGTCC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	72	86	+	11.1091	4.54e-05	0.109	TGCCGCCCACTGTCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	72	86	+	11.1091	4.54e-05	0.109	TGCCGCCCACTGTCC
ZIC4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	76	90	-	11.1091	4.54e-05	0.109	TCCACCCCACTGCGG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	69	-	11.8182	4.54e-05	0.135	GACCGGAAGTA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	69	-	11.8182	4.54e-05	0.135	GACCGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	89	-	11.8182	4.54e-05	0.135	GACCGGAAGTA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	89	-	11.8182	4.54e-05	0.135	GACCGGAAGTA
Klf12	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	44	58	+	9.37705	4.54e-05	0.0569	TGCCCCACCCTCTGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	57	71	-	9.37705	4.54e-05	0.0569	TGCCCCACCCTCTGT
Hes1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	13	22	-	10.2308	4.54e-05	0.0861	CCCACGCGCT
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	93	102	+	10.2308	4.54e-05	0.0861	CCCACGCGCT
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	93	102	+	10.2308	4.54e-05	0.0861	CCCACGCGCT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	102	111	-	10.2308	4.54e-05	0.0861	CCCACGCGCT
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	102	111	-	10.2308	4.54e-05	0.0861	CCCACGCGCT
GLIS3	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	100	113	-	5.16667	4.54e-05	0.379	TACCTCCTAAGATG
Vdr	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	6	21	+	5.40984	4.55e-05	0.833	AGGGACAGGGAGGTCA
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	11.1143	4.55e-05	0.222	GGCACGTGTT
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	11.1143	4.55e-05	0.222	GGCACGTGTT
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	99	110	-	11.6721	4.55e-05	0.41	GGTGGCGCCATT
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	99	110	-	11.6721	4.55e-05	0.41	GGTGGCGCCATT
STAT3	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	50	60	+	11.7551	4.55e-05	0.258	CTGCCGGAAAG
STAT3	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	55	65	-	11.7551	4.55e-05	0.258	CTGCCGGAAAG
HSF2	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	64	76	+	9.96364	4.55e-05	1	TGCTAGAATGTCC
TCF3	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	21	-	12.8077	4.55e-05	0.404	CACACCTGTC
PKNOX1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	-	4.06122	4.55e-05	1	AGGCATGTGTCA
PKNOX1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	+	4.06122	4.55e-05	1	AGGCATGTGTCA
E2F6	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	59	69	+	12.1379	4.55e-05	0.0561	TGGAGGGAAGT
E2F6	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	103	113	+	12.1379	4.55e-05	0.0561	TGGAGGGAAGT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	+	11.8727	4.55e-05	0.0682	GGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	+	11.8727	4.55e-05	0.0682	GGCCTCCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	+	11.8727	4.55e-05	0.0682	GGCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	+	11.8727	4.55e-05	0.0682	CGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	+	11.8727	4.55e-05	0.0682	CGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	+	11.8727	4.55e-05	0.0682	CGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	+	11.8727	4.55e-05	0.0682	CGCCGGCGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	-	11.8727	4.55e-05	0.0682	CGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	-	11.8727	4.55e-05	0.0682	GGCCTCCGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	-	11.8727	4.55e-05	0.0682	GGCCTCCGGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	67	83	+	5.25455	4.55e-05	0.0248	CTGGCCCCGCCTTACTC
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	79	95	+	5.25455	4.55e-05	0.0248	CCTGCTCCTCCCCCTTT
ELF1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	33	44	+	10.1818	4.55e-05	0.105	CTGCCGGAAGTT
ELF1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	71	82	-	10.1818	4.55e-05	0.105	CTGCCGGAAGTT
ELF1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	82	93	-	10.1818	4.55e-05	0.105	CTGCCGGAAGTT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	78	87	-	11.8085	4.55e-05	0.898	ACGTGTGAAG
TBR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	78	87	-	11.8085	4.55e-05	0.898	ACGTGTGAAG
TBR1	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	28	37	+	11.8085	4.55e-05	0.898	ACGTGTGAAG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	80	94	-	10.5	4.55e-05	0.298	ATACTTTTGCTTTCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	40	59	-	5	4.55e-05	0.0555	CAAAACAACAACAACAAAAC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	6	16	-	11.7049	4.55e-05	0.053	CCGGAAGACCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	6	16	-	11.7049	4.55e-05	0.053	CCGGAAGACCC
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	20	30	-	11.7049	4.55e-05	0.053	CCGGAAGACCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	46	56	+	11.7049	4.55e-05	0.053	CCGGAAGACGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	64	74	+	11.7049	4.55e-05	0.053	CCGGAAGTTTC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	64	74	+	11.7049	4.55e-05	0.053	CCGGAAGTTTC
Gabpa	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	59	69	-	11.7049	4.55e-05	0.053	CCGGAAGACGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	85	95	+	11.7049	4.55e-05	0.053	CCGGAAGACCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	36	46	-	11.697	4.55e-05	0.0469	CAGCACACCCT
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	47	61	+	11.5694	4.55e-05	0.546	GTATAAAAGACTCCA
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	47	61	+	11.5694	4.55e-05	0.546	GTATAAAAGACTCCA
ESR2	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	61	75	+	11.4231	4.55e-05	0.426	GGGGCACCCCGGTCC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	71	85	+	11.4231	4.55e-05	0.426	AGGTGACGCAGGCCA
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	71	85	+	11.4231	4.55e-05	0.426	AGGTGACGCAGGCCA
IRF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	58	71	-	9.67742	4.55e-05	0.686	CCCAAAACAAAAGC
IRF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	58	71	-	9.67742	4.55e-05	0.686	CCCAAAACAAAAGC
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	70	83	-	9.67742	4.55e-05	0.686	CTGAAAGTGAAGGT
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	7	23	-	-14.3571	4.55e-05	0.94	GGCTTGCCAGGAAGTGG
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	5	19	-	9.67213	4.55e-05	0.415	ATGACTCGGCCGTGA
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	10	24	-	9.67213	4.55e-05	0.415	ATGACTCGGCCGTGA
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	91	105	+	9.67213	4.55e-05	0.415	ATGACTCGGCCGTGA
MAF::NFE2	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	96	110	+	9.67213	4.55e-05	0.415	ATGACTCGGCCGTGA
Sox17	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	5	13	+	11.9438	4.55e-05	1	ACCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	5	13	+	11.9438	4.55e-05	1	ACCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	77	85	+	11.9438	4.55e-05	1	ACCATTGTC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	77	85	+	11.9438	4.55e-05	1	ACCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	77	85	+	11.9438	4.55e-05	1	ACCATTGTC
E2F4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	11	21	-	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	52	62	-	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	79	89	-	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	88	98	-	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	17	27	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	17	27	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	17	27	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	17	27	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	26	36	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	38	48	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	38	48	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	38	48	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	38	48	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	53	63	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	62	72	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	62	72	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	62	72	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	62	72	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	62	72	+	11.8448	4.55e-05	0.0458	AGGCGCGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	63	73	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	63	73	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	94	104	+	11.8448	4.55e-05	0.0458	GCGCGGGGAGG
Sox3	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	14	23	+	12.3793	4.55e-05	0.659	TCTTTGTTTC
Sox3	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	33	42	+	12.3793	4.55e-05	0.659	TCTTTGTTTC
NR2C2	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	8	22	+	10.2857	4.55e-05	0.119	GGGGGGAAAAGGGGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	54	68	-	10.2857	4.55e-05	0.119	CAGGGGGGGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	93	107	-	10.2857	4.55e-05	0.119	GGGGGGAAAAGGGGA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	+	11.1148	4.55e-05	0.0641	GGCCCTCGCGGCG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	-	11.1148	4.55e-05	0.0641	GGCCCTCGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	+	11.1148	4.55e-05	0.0641	GGCCCTCGCGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	+	11.1148	4.55e-05	0.0641	AGCCCAGAAGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	-	11.1148	4.55e-05	0.0641	GGCCCTCGCGGCG
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	5	14	+	11.3673	4.56e-05	0.213	CGGGCTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	5	14	+	11.3673	4.56e-05	0.213	CGGGCTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	5	14	+	11.3673	4.56e-05	0.213	CGGGCTTCCC
RELA	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	15	24	+	11.3673	4.56e-05	0.213	CGGGCTTCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	4	24	-	10.4082	4.56e-05	0.0158	AGGGGCGGGACGCGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	5	25	-	10.4082	4.56e-05	0.0158	GGGGCCGCGCGGGGGAGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	5	25	-	10.4082	4.56e-05	0.0158	GGGGCCGCGCGGGGGAGGGGC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	30	50	-	10.4082	4.56e-05	0.0158	GAGAGCGGGGGCGGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	34	54	-	10.4082	4.56e-05	0.0158	AGAGGGAGGAGGAGGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	34	54	-	10.4082	4.56e-05	0.0158	AGAGGGAGGAGGAGGAGGAGG
ZNF263	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	42	62	-	10.4082	4.56e-05	0.0158	AGGGGCGGGACGCGGGAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	93	113	-	10.4082	4.56e-05	0.0158	AGGGGCGGGACGCGGGAGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	2	22	+	10.4082	4.56e-05	0.0158	AGGGGCGGGACGCGGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	9	29	+	10.4082	4.56e-05	0.0158	AGAGGAAGCCCGGGAAGGAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	9	29	+	10.4082	4.56e-05	0.0158	AGAGGAAGCCCGGGAAGGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	50	70	+	10.4082	4.56e-05	0.0158	CGAGGCGAGGGGGCGGAGAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	53	73	+	10.4082	4.56e-05	0.0158	AGGGGCGGGACGCGGGAGGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	65	85	+	10.4082	4.56e-05	0.0158	GAGAGCGGGGGCGGGGAGGGA
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	23	36	-	4.36364	4.56e-05	0.173	CGAAGGCGGAACTG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	23	36	-	4.36364	4.56e-05	0.173	CGAAGGCGGAACTG
RARA::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	85	101	-	10.6327	4.56e-05	0.338	GGGTTGTAGAGAGGGGA
RARA::RXRA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	85	101	-	10.6327	4.56e-05	0.338	GGGTTGTAGAGAGGGGA
RARA::RXRA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	85	101	-	10.6327	4.56e-05	0.338	GGGTTGTAGAGAGGGGA
RARA::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	85	101	-	10.6327	4.56e-05	0.338	GGGTTGTAGAGAGGGGA
RARA::RXRA	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	14	30	+	10.6327	4.56e-05	0.338	GGGTTGTAGAGAGGGGA
Rfx1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	99	112	+	10.9138	4.56e-05	0.23	GTCCGCCTGGCAGC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	+	11.7653	4.56e-05	0.0857	CGGCCGGAGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	+	11.7653	4.56e-05	0.0857	CGGCCGGAGGCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	23	37	-	8.5	4.56e-05	0.224	GAAATGACACAGCTG
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	23	37	-	8.5	4.56e-05	0.224	GAAATGACACAGCTG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	23	37	-	8.5	4.56e-05	0.224	GAAATGACACAGCTG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	23	37	-	8.5	4.56e-05	0.224	GAAATGACACAGCTG
RXRA::VDR	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	27	41	-	7.18349	4.56e-05	1	GGGTCAGCCAGTTCG
RXRA::VDR	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	27	41	-	7.18349	4.56e-05	1	GGGTCAGCCAGTTCG
TFE3	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	+	11.551	4.56e-05	0.113	GTCACATGAC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	20	30	-	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	20	30	-	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	55	+	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	60	70	-	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	101	+	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	101	+	12.0182	4.56e-05	0.0517	CGCCCGGGGCC
Arntl	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	14	23	+	11.9836	4.56e-05	0.222	GCTCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	14	23	+	11.9836	4.56e-05	0.222	GCTCACGTGG
Arntl	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	45	54	+	11.9836	4.56e-05	0.222	GCTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	94	103	+	11.9836	4.56e-05	0.222	GCTCACGTGG
NR3C2	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	+	6.48936	4.56e-05	0.952	AAGAACATTGTCTCCCC
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	10	20	-	11.3818	4.56e-05	0.325	GTTCCTGGAAC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	10	20	-	11.3818	4.56e-05	0.325	GTTCCTGGAAC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	51	61	+	11.3818	4.56e-05	0.325	GTTCCTGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	51	61	+	11.3818	4.56e-05	0.325	GTTCCTGGAAC
MAFG	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	87	107	+	10.5612	4.56e-05	0.931	GAACAGCAGTCTCAGCGGTTA
MAFG	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	8	28	-	10.5612	4.56e-05	0.931	GAACAGCAGTCTCAGCGGTTA
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ELK1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	11.1489	4.56e-05	0.0838	GCCGGAAGGG
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	35	46	-	11.6	4.56e-05	0.217	AGCGACCCCCTG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	11	30	-	4.99083	4.56e-05	0.0555	CCACACCCCGTCCCATCCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	34	53	-	4.99083	4.56e-05	0.0555	CCCCGCCCCCCCCGCCCCGT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	50	69	-	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	50	69	-	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	17	36	+	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	17	36	+	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	17	36	+	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	17	36	+	4.99083	4.56e-05	0.0555	CCCCACCCCGCCCAGCGCCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	26	45	+	4.99083	4.56e-05	0.0555	CCCCGCCCCCCCCGCCCCGT
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	70	89	+	4.99083	4.56e-05	0.0555	CCCCACCCCCAGACCTCACC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	65	79	+	9.14286	4.56e-05	0.106	CCCGCCCCACTGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	65	79	+	9.14286	4.56e-05	0.106	CCCGCCCCACTGGGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr5:162864260..162864374,-__670.1.0.0	23	37	-	9.14286	4.56e-05	0.106	GGCCCCCTACTGAAT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	56	70	-	9.14286	4.56e-05	0.106	GGCCCCCTACTGAAT
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	14	27	+	7.53191	4.56e-05	0.0994	CGCCCCCTGGCGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	14	27	+	7.53191	4.56e-05	0.0994	CGCCCCCTGGCGGG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	25	38	-	7.53191	4.56e-05	0.0994	CGCCCCCTGGCGGG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	77	90	+	7.53191	4.56e-05	0.0994	CGCCCCCTGGCGGG
KLF16	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	83	+	11.2759	4.56e-05	0.0177	GCACCACCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	32	42	-	11.2759	4.56e-05	0.0177	GCACCACCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	9	19	+	11.6818	4.56e-05	0.0469	GTCCCCACCCT
Klf1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	96	106	-	11.6818	4.56e-05	0.0469	GTCCCCACCCT
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	62	73	-	11.4828	4.56e-05	0.365	CCGCCCCCCGTA
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	98	109	-	11.4828	4.56e-05	0.365	GAAACCACCGAG
Neurog1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	73	82	+	10.5934	4.56e-05	1	ACCGTATGTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	33	46	+	9.81034	4.57e-05	0.0304	GACCCCGCCCTTCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	56	69	+	9.81034	4.57e-05	0.0304	GACCCCGCCCTTCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	46	59	-	9.81034	4.57e-05	0.0304	TCCCCCGCCCATCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	46	59	-	9.81034	4.57e-05	0.0304	GACCCCGCCCTTCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	69	82	-	9.81034	4.57e-05	0.0304	GACCCCGCCCTTCC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr3:171543354..171543468,-__2092.1.0.0	93	103	-	11.8448	4.57e-05	0.241	GCTTGTGGTCA
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	19	29	+	11.8448	4.57e-05	0.241	TGTTGTGGTTG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	72	85	-	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	72	85	-	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	1	14	+	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	1	14	+	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	1	14	+	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	1	14	+	8.57143	4.57e-05	0.151	CGCTGACGTCAGAT
SP2	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	53	67	+	11.2414	4.57e-05	0.0114	TCCCTGCCCTTCCCC
SP2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	71	85	+	11.2414	4.57e-05	0.0114	CTTCCTCCTCCCCTC
SP2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	30	44	-	11.2414	4.57e-05	0.0114	CTTCCTCCTCCCCTC
SP2	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	48	62	-	11.2414	4.57e-05	0.0114	TCCCTGCCCTTCCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	84	98	-	11.2414	4.57e-05	0.0114	TCCCCACCTCTCTCA
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	32	47	+	10.7273	4.57e-05	0.252	GGTTACCATGGAATCC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	32	47	+	10.7273	4.57e-05	0.252	GGTTACCATGGAATCC
ERF	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	11.7286	4.57e-05	0.0932	ACCGGAAAGG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	-	11.7818	4.57e-05	0.184	GCTGACTCAGT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	+	11.7818	4.57e-05	0.184	GCTGACTCAGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	+	11.7818	4.57e-05	0.184	GCTGACTCAGT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	14	28	+	11.4324	4.57e-05	0.176	AGAGGTCAGAGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	14	28	+	11.4324	4.57e-05	0.176	AGAGGTCAGAGGGCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	14	28	-	11.4324	4.57e-05	0.176	GGGGGGCAGGGTGGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	14	28	-	11.4324	4.57e-05	0.176	GGGGGGCAGGGTGGA
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	31	45	+	11.4324	4.57e-05	0.176	GGGGGGCAGGGTGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	56	70	-	11.4324	4.57e-05	0.176	ATGGGGGAGGGGTCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	56	70	-	11.4324	4.57e-05	0.176	ATGGGGGAGGGGTCC
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	70	84	-	11.4324	4.57e-05	0.176	GGGGGGCAGGGTGGA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	87	101	+	11.4324	4.57e-05	0.176	GGGGGGCAGGGTGGA
PLAG1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	12	25	+	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	20	33	+	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	20	33	+	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	20	33	-	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	20	33	-	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	82	95	+	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	90	103	-	6.81633	4.57e-05	0.0714	GGGTCGGACTGGGA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	-	11.5957	4.57e-05	0.192	TGTGACTCAGA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	-	11.5957	4.57e-05	0.192	TGTGACTCAGA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	+	11.5957	4.57e-05	0.192	TGTGACTCAGA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	+	11.5957	4.57e-05	0.192	TGTGACTCAGA
JUND	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	-	11.5957	4.57e-05	0.192	TGTGACTCAGA
JUND	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	+	11.5957	4.57e-05	0.192	TGTGACTCAGA
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	104	113	+	11.7377	4.57e-05	0.718	TGTGCGGGTC
Foxd3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	48	59	+	11.9239	4.57e-05	1	ATTTATTTATTT
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	+	11.8182	4.57e-05	0.0893	AGCCCTACGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	+	11.8182	4.57e-05	0.0893	AGCCCTACGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	41	52	+	11.8182	4.57e-05	0.0893	TGCCGGCAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	41	52	+	11.8182	4.57e-05	0.0893	TGCCGGCAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	41	52	+	11.8182	4.57e-05	0.0893	TGCCGGCAGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	41	52	+	11.8182	4.57e-05	0.0893	TGCCGGCAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	+	11.8182	4.57e-05	0.0893	CGCCCCCAGGGG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	+	11.8182	4.57e-05	0.0893	CGCCCCCAGGGG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	+	11.8182	4.57e-05	0.0893	CGCCCCCAGGGG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	-	11.8182	4.57e-05	0.0893	AGCCTCGGGCCA
TFAP2B	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	-	11.8182	4.57e-05	0.0893	CGCCCCCAGGGG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	-	11.8182	4.57e-05	0.0893	AGCCCTACGGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	8	24	+	5.23636	4.57e-05	0.0248	TAGGCTCCGCCCAGGAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	8	24	+	5.23636	4.57e-05	0.0248	TAGGCTCCGCCCAGGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	17	33	-	5.23636	4.57e-05	0.0248	CGGGCCCAGCCCCCTGA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	17	33	-	5.23636	4.57e-05	0.0248	CGGGCCCAGCCCCCTGA
SP4	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	67	83	+	5.23636	4.57e-05	0.0248	CTGCCCCCTCCCCCTGC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	80	91	+	11.082	4.57e-05	0.123	GACCCGGAAACG
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	80	91	+	11.082	4.57e-05	0.123	GACCCGGAAACG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	35	-	11.082	4.57e-05	0.123	GACCCGGAAACG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	32	43	+	11.4737	4.57e-05	0.029	GCACCTCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	32	43	+	11.4737	4.57e-05	0.029	GCACCTCCCACC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	29	43	+	9.36066	4.57e-05	0.0569	TGCCCCGCCCCTGGA
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	43	57	+	9.36066	4.57e-05	0.0569	TGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	43	57	+	9.36066	4.57e-05	0.0569	TGCCCCGCCCCCGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	43	57	+	9.36066	4.57e-05	0.0569	TGCCCCGCCCCCGCC
Klf12	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	58	72	-	9.36066	4.57e-05	0.0569	TGCCCCGCCCCCGCC
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	46	57	-	11.7528	4.57e-05	1	TCACCAGCTGGA
TAL1::TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	46	57	-	11.7528	4.57e-05	1	TCACCAGCTGGA
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	46	57	-	11.7528	4.57e-05	1	TCACCAGCTGGA
PRDM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	36	50	+	11.1455	4.57e-05	0.312	GGGAGGGGAAAGGTA
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	36	50	+	11.1455	4.57e-05	0.312	GGGAGGGGAAAGGTA
PRDM1	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	65	79	-	11.1455	4.57e-05	0.312	GGGAGGGGAAAGGTA
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	70	81	+	11.7258	4.57e-05	0.281	CCGCCCACCCAA
ATF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	23	35	-	10.6557	4.57e-05	0.532	AAATGATGAAATG
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	23	35	-	10.6557	4.57e-05	0.532	AAATGATGAAATG
RXRB	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	107	-	2.21818	4.57e-05	0.505	GAGATTAAAGGTGA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	11.7183	4.57e-05	0.12	ACCGGAACTA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	11.7183	4.57e-05	0.12	ACCGGAACTA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	22	35	-	11.0962	4.57e-05	0.0199	CCCACTCCTCCGTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	22	35	-	11.0962	4.57e-05	0.0199	CCCACTCCTCCGTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	64	77	-	11.0962	4.57e-05	0.0199	CACCCACCGCCGTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	64	77	-	11.0962	4.57e-05	0.0199	CACCCACCGCCGTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	64	77	-	11.0962	4.57e-05	0.0199	CACCCACCGCCGTC
EGR1	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	80	93	+	11.0962	4.57e-05	0.0199	CCCACTCCTCCGTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	91	104	-	11.0962	4.57e-05	0.0199	CTGCCACCGCCACA
YY1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	23	34	-	11.4615	4.57e-05	0.235	CATCATGGCGGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	91	102	+	11.4615	4.57e-05	0.235	CATCATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	91	102	+	11.4615	4.57e-05	0.235	CATCATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	91	102	+	11.4615	4.57e-05	0.235	CATCATGGCGGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	91	102	+	11.4615	4.57e-05	0.235	CATCATGGCGGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	91	102	+	11.4615	4.57e-05	0.235	CATCATGGCGGC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	56	66	-	12.5714	4.57e-05	0.158	AGCAGGTGCAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	56	66	-	12.5714	4.57e-05	0.158	AGCAGGTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	1	11	+	12.5714	4.57e-05	0.158	GACAGCTGAGT
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	1	11	+	12.5714	4.57e-05	0.158	GACAGCTGAGT
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	1	11	+	12.5714	4.57e-05	0.158	GACAGCTGAGT
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	1	11	+	12.5714	4.57e-05	0.158	GACAGCTGAGT
Tcf12	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	35	+	12.5714	4.57e-05	0.158	CGCAGCTGCGC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	66	76	+	12.5714	4.57e-05	0.158	GGCAGCTGAAC
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	68	78	+	12.5714	4.57e-05	0.158	AGCAGGTGCAG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	68	78	+	12.5714	4.57e-05	0.158	AGCAGGTGCAG
Tcf12	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	79	89	+	12.5714	4.57e-05	0.158	CACAGCTGGGA
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	90	+	12.5714	4.57e-05	0.158	CGCAGCTGCGC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	81	91	+	12.5714	4.57e-05	0.158	CACAGCTGGGA
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	92	102	+	11.6316	4.58e-05	1	GACATCAATCT
Hoxa9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	92	102	+	11.6316	4.58e-05	1	GACATCAATCT
MYF6	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	-	11.4545	4.58e-05	1	CACAGCTGTC
MYF6	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	-	11.4545	4.58e-05	1	CACAGCTGTC
MYF6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	+	11.4545	4.58e-05	1	CACAGCTGTC
MYF6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	+	11.4545	4.58e-05	1	CACAGCTGTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	6	23	+	-11.7368	4.58e-05	0.0421	GCGGGGGATGAAGGCGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	6	23	+	-11.7368	4.58e-05	0.0421	GCGGGGGATGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	69	86	-	-11.7368	4.58e-05	0.0421	GGGCGGCAGGTAGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	69	86	-	-11.7368	4.58e-05	0.0421	GGGCGGCAGGTAGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	97	114	-	-11.7368	4.58e-05	0.0421	GACAGCAAGAAAGGAAGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	97	114	-	-11.7368	4.58e-05	0.0421	GACAGCAAGAAAGGAAGA
RREB1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	4	23	-	4.98165	4.58e-05	0.0555	CCACCCCTCCCCCCTCCCCA
RREB1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	92	111	+	4.98165	4.58e-05	0.0555	CCACCCCTCCCCCCTCCCCA
TFEC	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	93	102	-	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	10	19	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	10	19	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	10	19	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	10	19	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	13	22	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	26	35	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	84	93	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	84	93	+	11.9268	4.58e-05	0.153	CTCACATGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	100	109	+	11.9268	4.58e-05	0.153	CTCACATGAC
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	85	-	4.32927	4.58e-05	0.414	CAGGGCAAAGTCCA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	85	-	4.32927	4.58e-05	0.414	CAGGGCAAAGTCCA
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	99	111	-	12.5306	4.58e-05	0.154	CCCAGCTGCTGGA
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	99	111	-	12.5306	4.58e-05	0.154	CCCAGCTGCTGGA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	47	67	+	9.91935	4.58e-05	0.174	TTCTTTTTTTTCTTTTTTTTT
MAX::MYC	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	14	-	11.3367	4.58e-05	0.285	TATCACGTGGA
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	25	39	+	7.62069	4.58e-05	0.0378	CCCAGCCCCCGCCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	34	48	-	7.62069	4.58e-05	0.0378	CCCTGCCCCCCCACC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	34	48	-	7.62069	4.58e-05	0.0378	CCCTGCCCCCCCACC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	15	30	+	10.9818	4.58e-05	0.0374	CCCCGCCCACCTTCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	15	30	+	10.9818	4.58e-05	0.0374	CCCCGCCCACCTTCTC
EGR4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	21	36	+	10.9818	4.58e-05	0.0374	CCCTGCCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	18	33	-	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	18	33	-	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	18	33	-	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	18	33	-	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	41	56	-	10.9818	4.58e-05	0.0374	CCCTGCCCCCGCCCCG
EGR4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	59	74	+	10.9818	4.58e-05	0.0374	CCCTGCCCCCGCCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	80	95	+	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	80	95	+	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	80	95	+	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	80	95	+	10.9818	4.58e-05	0.0374	TTACGCCGCCGCCCAC
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	37	53	-	6.59184	4.58e-05	1	GAGGACGAAACGTCCCG
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	37	53	-	6.59184	4.58e-05	1	GAGGACGAAACGTCCCG
RARA::RXRA	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	4	20	-	10.6224	4.58e-05	0.338	GTGTCAGGGACAGGGCA
RARA::RXRA	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	95	111	+	10.6224	4.58e-05	0.338	GTGTCAGGGACAGGGCA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	2	12	-	11.6885	4.58e-05	0.0531	CAGGAAGCGCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	2	12	-	11.6885	4.58e-05	0.0531	CAGGAAGCGCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	2	12	-	11.6885	4.58e-05	0.0531	CAGGAAGCGCG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	51	61	-	11.8276	4.58e-05	0.0458	GAGCGGGAGCA
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	51	61	-	11.8276	4.58e-05	0.0458	GAGCGGGAGCA
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	4	18	-	10.4848	4.58e-05	0.298	CCAGTTCCCTTTCCT
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	47	57	-	11.8	4.58e-05	0.757	GGGGTTGCGGC
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	47	57	-	11.8	4.58e-05	0.757	GGGGTTGCGGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	47	57	-	11.8	4.58e-05	0.757	GGGGTTGCGGC
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	23	36	+	7.68421	4.58e-05	0.56	TCTCCAGCTGTCGC
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	27	40	-	7.68421	4.58e-05	0.56	TCTCCAGCTGTCGC
Tcf21	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	75	88	+	7.68421	4.58e-05	0.56	TCTCCAGCTGTCGC
Tcf21	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	79	92	-	7.68421	4.58e-05	0.56	TCTCCAGCTGTCGC
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	44	57	+	6.79592	4.58e-05	0.365	TGGCAGAAACCCAG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	43	-	10.1148	4.58e-05	0.0987	TGTCCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	43	-	10.1148	4.58e-05	0.0987	TGTCCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	43	-	10.1148	4.58e-05	0.0987	TGTCCGGAAGTA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	43	-	10.1148	4.58e-05	0.0987	TGTCCGGAAGTA
MEOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	34	43	+	10.396	4.58e-05	1	TGTAATTAAA
MEOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	34	43	+	10.396	4.58e-05	1	TGTAATTAAA
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	73	82	-	11.2929	4.58e-05	0.908	TTTTTCCGTG
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	73	82	-	11.2929	4.58e-05	0.908	TTTTTCCGTG
NFATC3	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	104	113	-	11.2929	4.58e-05	0.908	TTTTTCCGTG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	33	44	+	11.8364	4.58e-05	0.055	CGCCCGGAGGGA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	38	49	+	11.8364	4.58e-05	0.055	CACCCTCGGGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	-	10.9655	4.58e-05	0.0554	CCCCTGGCGGGCA
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	+	10.9655	4.58e-05	0.0554	CCCCTGGCGGGCA
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	72	84	-	10.6429	4.58e-05	0.729	GGAGCAGATGTGG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	72	84	-	10.6429	4.58e-05	0.729	GGAGCAGATGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	72	84	-	10.6429	4.58e-05	0.729	GGAGCAGATGTGG
E2F6	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	3	13	+	12.1207	4.58e-05	0.0565	AGGAGGGAGAT
ZBTB7A	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	83	94	-	11.5857	4.59e-05	0.217	GGCACCCACCTG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	21	32	+	11.5857	4.59e-05	0.217	GGCACCCACCTG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	+	11.0984	4.59e-05	0.0641	CCCCTCGAGGGCC
POU2F1	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	20	31	+	11.69	4.59e-05	1	TTTATGCAGATG
POU6F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	6	15	+	11.9524	4.59e-05	1	ATTAATTAAG
POU6F1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	6	15	+	11.9524	4.59e-05	1	ATTAATTAAG
POU6F1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	6	15	-	11.9524	4.59e-05	1	CTTAATTAAT
POU6F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	6	15	-	11.9524	4.59e-05	1	CTTAATTAAT
PLAG1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	7	20	+	6.80612	4.59e-05	0.0714	TGGGCTATAGGGGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	65	78	-	6.80612	4.59e-05	0.0714	GGGGCGCAGAGAGG
PLAG1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	95	108	-	6.80612	4.59e-05	0.0714	TGGGCTATAGGGGA
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	33	44	-	8.14286	4.59e-05	0.159	CCTGACATCACT
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	62	73	+	8.14286	4.59e-05	0.159	CCTGACATCACT
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	43	57	-	9.12857	4.59e-05	0.106	GGCCTCCCTCAGCGA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	43	57	-	9.12857	4.59e-05	0.106	GGCCTCCCTCAGCGA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	43	57	-	9.12857	4.59e-05	0.106	GGCCTCCCTCAGCGA
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	43	57	-	9.12857	4.59e-05	0.106	GGCCTCCCTCAGCGA
E2F4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	28	38	-	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	50	60	-	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	2	12	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	13	23	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	17	27	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	55	65	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	57	67	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	77	87	+	11.8103	4.59e-05	0.0458	GGGCGGGGGGA
Foxq1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	80	90	+	12.1735	4.59e-05	1	ACTTGTTTATT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	28	38	+	11.9388	4.59e-05	0.198	TCGTGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	28	38	+	11.9388	4.59e-05	0.198	TCGTGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	40	50	-	11.9388	4.59e-05	0.198	TCGTGAGTCAT
IRF9	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	74	88	-	-0.890909	4.59e-05	0.53	AGGGAAAGTGAAAGG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	12.0172	4.59e-05	0.103	TCCGGAAATG
ETS1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	12.0172	4.59e-05	0.103	TCCGGAAATG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	12.0172	4.59e-05	0.103	TCCGGAAATG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	21	35	+	11.5192	4.59e-05	0.146	AGTCTGACCAATGAA
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	21	35	+	11.5192	4.59e-05	0.146	AGTCTGACCAATGAA
NFAT5	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	99	108	-	11.5645	4.59e-05	1	TTTTTCCACC
NFAT5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	7	16	+	11.5645	4.59e-05	1	TTTTTCCACC
NFAT5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	7	16	+	11.5645	4.59e-05	1	TTTTTCCACC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	7	16	+	11.3394	4.59e-05	0.0548	ATCCCCCCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	15	31	+	5.21818	4.59e-05	0.0249	GCCGCCCCTCCCCCCAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	15	31	+	5.21818	4.59e-05	0.0249	GCCGCCCCTCCCCCCAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	15	31	+	5.21818	4.59e-05	0.0249	GCCGCCCCTCCCCCCAG
SP4	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	26	42	+	5.21818	4.59e-05	0.0249	GCGGCCACACCCCCGGG
GLIS2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	13	26	+	9.19672	4.59e-05	0.185	GCCCCCCCGTGCCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	48	57	+	11.6633	4.59e-05	0.0196	AGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	48	57	+	11.6633	4.59e-05	0.0196	AGGGCGCGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	97	106	+	11.6633	4.59e-05	0.0196	AGGGCGCGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	99	108	-	11.6633	4.59e-05	0.0196	AGGGCGCGGC
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	74	91	-	6.50459	4.6e-05	0.626	GCAAAGCGAACCCAAAAT
IRF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	74	91	-	6.50459	4.6e-05	0.626	GCAAAGCGAACCCAAAAT
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	70	80	+	11.8545	4.6e-05	0.0688	AGCCCACGGCA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	34	44	+	10.3448	4.6e-05	0.0818	ACGCGCACGCC
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	34	44	+	10.3448	4.6e-05	0.0818	ACGCGCACGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	34	44	+	10.3448	4.6e-05	0.0818	ACGCGCACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	34	44	+	10.3448	4.6e-05	0.0818	ACGCGCACGCC
EGR2	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	71	81	-	10.3448	4.6e-05	0.0818	ACGCGCACGCC
Crem	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	43	+	12.377	4.6e-05	0.266	GCTGACGTAA
Crem	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	84	+	12.377	4.6e-05	0.266	GCTGACGTAA
Crem	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	31	40	-	12.377	4.6e-05	0.266	GCTGACGTAA
Crem	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	72	81	-	12.377	4.6e-05	0.266	GCTGACGTAA
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	10	27	+	5.96552	4.6e-05	0.249	TCGCCACGCCCTCCTGCT
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	10	27	+	5.96552	4.6e-05	0.249	TCGCCACGCCCTCCTGCT
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	25	42	+	5.96552	4.6e-05	0.249	TCGCCACGCCCTCCTGCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	7	17	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	7	17	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	7	17	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	27	+	11.75	4.6e-05	0.0131	CGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	33	43	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	33	43	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	27	37	-	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	31	41	-	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	34	44	-	11.75	4.6e-05	0.0131	CGCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	70	+	11.75	4.6e-05	0.0131	ACCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	70	+	11.75	4.6e-05	0.0131	ACCCCACCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	70	+	11.75	4.6e-05	0.0131	ACCCCACCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	63	73	+	11.75	4.6e-05	0.0131	GCACCTCCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	67	77	+	11.75	4.6e-05	0.0131	CGCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	63	73	-	11.75	4.6e-05	0.0131	ACCCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	63	73	-	11.75	4.6e-05	0.0131	ACCCCACCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	78	88	+	11.75	4.6e-05	0.0131	CGCCCGCCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	70	80	-	11.75	4.6e-05	0.0131	CGCCCGCCCAC
SP1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	88	98	-	11.75	4.6e-05	0.0131	CGCCCGCCCAC
GCM1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	33	43	+	11.5306	4.6e-05	0.531	CACGCGGGTAC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	72	82	-	11.5306	4.6e-05	0.531	CACGCGGGTAC
GCM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	72	82	-	11.5306	4.6e-05	0.531	CACGCGGGTAC
KLF14	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	4	17	+	9.7931	4.6e-05	0.0305	GGACGCGCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	35	48	+	9.7931	4.6e-05	0.0305	ATCCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	35	48	+	9.7931	4.6e-05	0.0305	ATCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	45	58	-	9.7931	4.6e-05	0.0305	CGCCGCGCCCTCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	45	58	-	9.7931	4.6e-05	0.0305	CGCCGCGCCCTCTC
KLF14	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	98	111	-	9.7931	4.6e-05	0.0305	GGACGCGCCCTCCC
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	58	74	+	-3.87273	4.6e-05	1	AAGGTCACTCGAGGCTC
NRF1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	17	27	+	11	4.6e-05	0.0173	ACGCCTGTGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	88	98	-	11	4.6e-05	0.0173	ACGCCTGTGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	88	98	-	11	4.6e-05	0.0173	ACGCCTGTGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	88	98	-	11	4.6e-05	0.0173	ACGCCTGTGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	88	98	-	11	4.6e-05	0.0173	ACGCCTGTGCC
STAT3	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	95	105	-	11.7347	4.6e-05	0.26	CTTCCTGAAAG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	19	33	-	11.0909	4.6e-05	0.101	GCCTCGTGAGGGCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	19	33	-	11.0909	4.6e-05	0.101	GCCTCGTGAGGGCTC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	76	90	-	10.6061	4.6e-05	0.29	AGCCCTGAGTCAGCT
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	81	92	+	8.2	4.6e-05	0.832	GCCATAAATAAC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	4	23	-	4.9633	4.6e-05	0.0556	CCCCCTCTCTACCCCCCCAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	4	23	-	4.9633	4.6e-05	0.0556	CCCCCTCTCTACCCCCCCAC
ELK4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	52	62	-	11.9636	4.6e-05	0.058	CCGTTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	75	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	75	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	114	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	114	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	114	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	114	-	11.9636	4.6e-05	0.058	CAGCTTCCGGA
ELK4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	53	63	+	11.9636	4.6e-05	0.058	CCGTTTCCTGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	79	89	+	11.9636	4.6e-05	0.058	CAGCTTCCGGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	7	21	+	11.2241	4.6e-05	0.0115	CGCCCACCCCGCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	20	34	+	11.2241	4.6e-05	0.0115	CCCCCACCCCAGCCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	86	100	+	11.2241	4.6e-05	0.0115	CCCCCACCTTCGCTC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	86	100	+	11.2241	4.6e-05	0.0115	CCCCCACCTTCGCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	86	100	+	11.2241	4.6e-05	0.0115	CCCCCACCTTCGCTC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	86	100	+	11.2241	4.6e-05	0.0115	CCCCCACCTTCGCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	24	38	-	11.2241	4.6e-05	0.0115	GGCCCTCCCAGTCCG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	35	49	-	11.2241	4.6e-05	0.0115	CCCCCACCCCAGCCA
SP2	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	73	87	-	11.2241	4.6e-05	0.0115	CGCCCGCTCCCGCGC
SP2	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	86	100	-	11.2241	4.6e-05	0.0115	GTTCCTCCTCCCGGA
LHX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.8667	4.6e-05	1	ACTAATTAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	16	36	-	10.3878	4.6e-05	0.0159	GAGGGCAGGGGAGGGGAGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	71	91	-	10.3878	4.6e-05	0.0159	TGGGGCGCGCAGGGGGAGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	77	97	-	10.3878	4.6e-05	0.0159	TGTTGAGGAGCCGGAGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	42	62	+	10.3878	4.6e-05	0.0159	GAGGGCAGGGGAGGGGAGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	42	62	+	10.3878	4.6e-05	0.0159	GAGGGCAGGGGAGGGGAGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	53	73	+	10.3878	4.6e-05	0.0159	AGTGGAGCGGGGGTGGGGCGG
Myc	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	35	44	-	12.5091	4.6e-05	0.388	GCATGTGCTC
ERG	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	11.9818	4.6e-05	0.112	ACCGGAAAGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	27	41	-	7.60345	4.61e-05	0.0378	TCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	27	41	-	7.60345	4.61e-05	0.0378	TCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	27	41	-	7.60345	4.61e-05	0.0378	TCCCGCCCCCCCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	27	41	-	7.60345	4.61e-05	0.0378	TCCCGCCCCCCCCGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	45	59	-	7.60345	4.61e-05	0.0378	TGCTGCCCACGCCTG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	64	-	12	4.61e-05	0.0517	CCCCGCAGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	64	-	12	4.61e-05	0.0517	CCCCGCAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	64	-	12	4.61e-05	0.0517	CCCCGCAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	79	-	12	4.61e-05	0.0517	CCCCGCAGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	79	-	12	4.61e-05	0.0517	CCCCGCAGGCT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	94	104	+	12	4.61e-05	0.0517	CGCCTCCAGCG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	27	36	+	11.3061	4.61e-05	0.23	GATCACGCGA
Mitf	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	27	36	+	11.3061	4.61e-05	0.23	GATCACGCGA
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	27	36	+	11.3061	4.61e-05	0.23	GATCACGCGA
Mitf	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	79	88	-	11.3061	4.61e-05	0.23	GATCACGCGA
POU2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	39	50	+	11.68	4.61e-05	1	CGTATGGAAATT
POU2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	39	50	+	11.68	4.61e-05	1	CGTATGGAAATT
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	39	50	+	11.68	4.61e-05	1	CGTATGGAAATT
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	97	112	-	-2.5	4.61e-05	0.978	TAGGGGCACAGGGTCT
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	97	112	-	-2.5	4.61e-05	0.978	TAGGGGCACAGGGTCT
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	97	112	-	-2.5	4.61e-05	0.978	TAGGGGCACAGGGTCT
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	97	112	-	-2.5	4.61e-05	0.978	TAGGGGCACAGGGTCT
Rarb	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	97	112	-	-2.5	4.61e-05	0.978	TAGGGGCACAGGGTCT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	49	58	-	11.9808	4.61e-05	0.0936	GGCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	49	58	-	11.9808	4.61e-05	0.0936	GGCGGAAGCA
ETV6	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	65	74	-	11.9808	4.61e-05	0.0936	GGCGGAAGCA
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	86	96	-	12.1224	4.61e-05	0.788	ATTGCAACATT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	86	96	-	12.1224	4.61e-05	0.788	ATTGCAACATT
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	37	54	+	-11.7632	4.61e-05	0.0422	GAAGGAACGGAAGCATGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	61	78	-	-11.7632	4.61e-05	0.0422	GAAGGAACGGAAGCATGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	61	78	-	-11.7632	4.61e-05	0.0422	GAAGGAACGGAAGCATGC
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	21	31	+	12.0769	4.61e-05	0.335	GTAATGAATCA
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	23	43	+	9.90323	4.61e-05	0.174	TTTTCCTTTTTTTTTTTTTCC
RFX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	+	7.12857	4.61e-05	0.274	TGTTGTCATACCAATG
Zfx	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	38	51	+	11.6364	4.61e-05	0.0527	CGCTCCCTGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	69	82	+	11.6364	4.61e-05	0.0527	GGGGACTAGGCCTT
NR2C2	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	13	27	+	10.2571	4.61e-05	0.119	GGAGGGGAGAGGGAG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	1	15	-	10.2571	4.61e-05	0.119	CAAGGGCAAAGGGGT
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	1	15	-	10.2571	4.61e-05	0.119	CAAGGGCAAAGGGGT
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	1	15	-	10.2571	4.61e-05	0.119	CAAGGGCAAAGGGGT
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	63	77	+	10.2571	4.61e-05	0.119	CAAGGGCAAAGGGGT
MEF2C	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	21	35	+	11.5593	4.61e-05	0.956	GGTTTAAAAATACAC
TP73	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	5	22	+	9.55769	4.61e-05	0.649	TCCAGGCCGCAGCACGCA
TP73	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	47	64	-	9.55769	4.61e-05	0.649	TACAACTCCCAGCATGCC
TP73	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	47	64	-	9.55769	4.61e-05	0.649	TACAACTCCCAGCATGCC
TBP	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	12	26	+	11.5556	4.61e-05	0.546	CTATAAAAAAAGACC
TBP	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	82	96	-	11.5556	4.61e-05	0.546	CTATAAAAAAAGACC
HOXC11	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	1	11	+	12.1724	4.61e-05	1	TGTCATAAAAA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	-	11.2459	4.61e-05	0.0586	CGCCGCTAGGGGA
IRF7	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	34	47	-	9.64516	4.61e-05	0.686	GAGAAAGCGAATGC
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	63	74	+	11.7303	4.61e-05	1	AGACCATCTTTT
HEY2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	11.4483	4.61e-05	0.177	CCCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	11.4483	4.61e-05	0.177	CCCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	11.4483	4.61e-05	0.177	CCCACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	11.4483	4.61e-05	0.177	CCCACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	11.4483	4.61e-05	0.177	CCCACGTGCC
Creb5	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	40	51	+	9.85455	4.61e-05	0.195	GATAACGTCATT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	65	-	11.7551	4.61e-05	0.0857	TCCCCGCAGGCT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	65	-	11.7551	4.61e-05	0.0857	TCCCCGCAGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	65	-	11.7551	4.61e-05	0.0857	TCCCCGCAGGCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	80	-	11.7551	4.61e-05	0.0857	TCCCCGCAGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	80	-	11.7551	4.61e-05	0.0857	TCCCCGCAGGCT
CEBPG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	8	17	-	11.0408	4.61e-05	0.776	GTGACGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	8	17	-	11.0408	4.61e-05	0.776	GTGACGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	34	43	-	11.0408	4.61e-05	0.776	GTGACGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	61	70	+	11.0408	4.61e-05	0.776	GTGACGCAAT
RUNX3	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	61	70	-	12.0192	4.62e-05	0.439	AGACCACAAT
RUNX3	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	45	54	+	12.0192	4.62e-05	0.439	AGACCACAAT
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	+	12.459	4.62e-05	0.333	AGCACGTGGG
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	+	12.459	4.62e-05	0.333	AGCACGTGGG
Npas2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	-	12.459	4.62e-05	0.333	AGCACGTGGG
Ddit3::Cebpa	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	23	34	-	11.8556	4.62e-05	1	GGGTGCAATTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	4	17	+	11.0769	4.62e-05	0.02	ACTCCACCCCCTGT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	14	27	+	11.0769	4.62e-05	0.02	ACTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	14	27	+	11.0769	4.62e-05	0.02	ACTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	14	27	+	11.0769	4.62e-05	0.02	ACTCCTCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	10	23	-	11.0769	4.62e-05	0.02	TCGCCACCTCCTGC
EGR1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	31	44	+	11.0769	4.62e-05	0.02	GCCACACCTCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	68	81	-	11.0769	4.62e-05	0.02	CCGCCTCCCCTACA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	68	81	-	11.0769	4.62e-05	0.02	CCGCCTCCCCTACA
EGR1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	71	84	-	11.0769	4.62e-05	0.02	GCCACACCTCCACA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	28	44	-	5.2	4.62e-05	0.025	TCATACCCGCCCATTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	28	44	-	5.2	4.62e-05	0.025	TCATACCCGCCCATTTC
SP4	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	51	67	-	5.2	4.62e-05	0.025	ACCGCCACTCCCACAAG
BCL6B	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	42	58	-	-14.4286	4.62e-05	0.94	GTTTCTCCAGGAATTCC
BCL6B	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	57	73	+	-14.4286	4.62e-05	0.94	GTTTCTCCAGGAATTCC
Foxo1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	2	12	+	12.1207	4.62e-05	0.895	TCCTGTTGTCA
Foxo1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	22	32	+	12.1207	4.62e-05	0.895	TCCTGTTGTCA
Foxo1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	83	93	-	12.1207	4.62e-05	0.895	TCCTGTTGTCA
Foxo1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	103	113	-	12.1207	4.62e-05	0.895	TCCTGTTGTCA
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	10	22	-	10.6286	4.62e-05	0.729	TTACCAGCTGTTG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	-	10.9483	4.62e-05	0.0554	AGCCCGGGAGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	-	10.9483	4.62e-05	0.0554	AGCCCGGGAGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	109	-	10.9483	4.62e-05	0.0554	ACCCCCGGCGGCG
PAX1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	49	65	+	6.87273	4.62e-05	0.592	CGTGACGCACGGATGGC
Tcf21	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	76	89	+	7.65789	4.62e-05	0.56	GGGCCAGCTGGCAC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	46	56	+	8.6	4.62e-05	0.862	GCGAAGGTCAC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	46	56	+	8.6	4.62e-05	0.862	GCGAAGGTCAC
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	46	56	+	8.6	4.62e-05	0.862	GCGAAGGTCAC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	46	56	+	8.6	4.62e-05	0.862	GCGAAGGTCAC
Esrra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	46	56	+	8.6	4.62e-05	0.862	GCGAAGGTCAC
Esrra	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	59	69	-	8.6	4.62e-05	0.862	GCGAAGGTCAC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	34	47	-	-0.545455	4.62e-05	0.732	ATTAAAGTGAAAGC
TCF3	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	39	-	12.7885	4.62e-05	0.404	ACCACCTGCT
TCF3	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	81	+	12.7885	4.62e-05	0.404	ACCACCTGCT
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	90	-	12.7885	4.62e-05	0.404	ACCACCTGCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	22	+	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	109	+	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	6	16	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	29	39	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	51	61	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	62	72	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	62	72	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	71	81	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	71	81	-	11.2414	4.62e-05	0.0177	ACTCCGCCCCC
Bach1::Mafk	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	37	51	+	8.46053	4.62e-05	0.224	GGGGTGACGCGGCGT
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	64	78	-	8.46053	4.62e-05	0.224	GGGGTGACGCGGCGT
ETV3	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.6901	4.62e-05	0.12	CCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.6901	4.62e-05	0.12	CCCGGAAGCG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	45	54	+	11.5859	4.62e-05	0.165	TGAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	61	70	-	11.5859	4.62e-05	0.165	TGAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	61	70	-	11.5859	4.62e-05	0.165	TGAGGGGGGG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	10	23	+	9.18033	4.62e-05	0.185	CCCCCCCCCCAGTG
Esrrg	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	10	19	-	11.7551	4.62e-05	0.8	CCAAGGTCGC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	10	19	-	11.7551	4.62e-05	0.8	CCAAGGTCGC
Esrrg	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	22	31	-	11.7551	4.62e-05	0.8	CCAAGGTCGC
Esrrg	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	42	51	-	11.7551	4.62e-05	0.8	CCAAGGTCGC
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	105	114	+	11.7551	4.62e-05	0.8	TGAAGGTCGC
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	105	114	+	11.7551	4.62e-05	0.8	TGAAGGTCGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	13	28	-	10.9636	4.62e-05	0.0375	CCCTGCCCCCGCGCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	13	28	-	10.9636	4.62e-05	0.0375	CCCTGCCCCCGCGCCG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	34	49	+	10.9636	4.62e-05	0.0375	GACCGCCCACGTCCCA
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	95	110	+	10.9636	4.62e-05	0.0375	CCCTGCCCCCGCGCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	95	110	+	10.9636	4.62e-05	0.0375	CCCTGCCCCCGCGCCG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	17	27	-	12.0816	4.63e-05	0.13	ATCACGTGGCA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	17	27	-	12.0816	4.63e-05	0.13	ATCACGTGGCA
FEV	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	12.0385	4.63e-05	0.122	ACCGGAAGAG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	12.0385	4.63e-05	0.122	ACCGGAAGAG
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	+	7.7069	4.63e-05	0.257	AGTTTCCACAGAAACT
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	+	7.7069	4.63e-05	0.257	AGTTTCCACAGAAACT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	75	89	-	9.32787	4.63e-05	0.0575	GGCCCCGCCTCTCTT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	75	89	-	9.32787	4.63e-05	0.0575	GGCCCCGCCTCTCTT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	5	14	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	9	18	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	9	18	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	14	23	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	15	24	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	16	25	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	19	28	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	19	28	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	19	28	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	23	32	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	29	38	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	29	38	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	29	38	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	29	38	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	29	38	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	30	39	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	30	39	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	30	39	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	30	39	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	32	41	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	36	45	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	36	45	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	38	47	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	42	51	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	43	52	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	46	55	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	46	55	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	46	55	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	54	63	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	72	81	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	72	81	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	72	81	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	72	81	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	75	84	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	76	85	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	76	85	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	77	86	-	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	79	88	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	79	88	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	85	94	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	100	109	-	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	1	10	+	11.9184	4.63e-05	0.0184	GCCTCGCCCT
KLF5	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	1	10	+	11.9184	4.63e-05	0.0184	GCCTCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	15	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	19	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	19	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	21	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	21	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	21	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	21	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	24	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	16	25	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	30	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	36	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	38	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	38	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	29	38	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	29	38	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	39	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	39	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	39	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	40	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	41	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	33	42	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	38	47	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	38	47	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	58	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	58	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	64	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	73	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	82	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	83	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	75	84	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	91	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	93	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	94	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	97	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	99	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	92	101	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	106	+	11.9184	4.63e-05	0.0184	GCCCCGCCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	101	110	+	11.9184	4.63e-05	0.0184	CCTCCGCCCC
NFYA	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	45	62	-	10.0854	4.63e-05	0.142	AGGGCTTTTATTGGCTTG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	31	44	-	12	4.63e-05	0.22	ATACTGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	31	44	-	12	4.63e-05	0.22	ATACTGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	31	44	-	12	4.63e-05	0.22	ATACTGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	31	44	-	12	4.63e-05	0.22	ATACTGTGACTCAG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	7	19	-	3.65306	4.63e-05	0.242	AGGGGGTCCCCGG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	7	19	-	3.65306	4.63e-05	0.242	AGGGGGTCCCCGG
TFAP4	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	76	+	11.8182	4.63e-05	0.655	AGCAGCTGTT
TFAP4	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	92	+	11.8182	4.63e-05	0.655	AGCAGCTGTT
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	97	-	11.8182	4.63e-05	0.655	AGCAGCTGTT
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	2	13	-	10.9592	4.63e-05	0.17	GGTTAGGGGTAG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	2	13	-	10.9592	4.63e-05	0.17	GGTTAGGGGTAG
INSM1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	102	113	+	10.9592	4.63e-05	0.17	GGTTAGGGGTAG
ELF1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	29	40	+	10.1091	4.63e-05	0.106	GCACCGGAAGCG
ELF1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	30	-	10.1091	4.63e-05	0.106	GCACCGGAAGCG
ELF1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	86	-	10.1091	4.63e-05	0.106	GCACCGGAAGCG
ERF	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	27	36	-	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	36	45	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	44	53	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	54	63	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	54	63	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	54	63	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	54	63	+	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	62	71	-	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	62	71	-	11.6429	4.63e-05	0.0932	ACCGGAACCG
ERF	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	70	79	-	11.6429	4.63e-05	0.0932	ACCGGAACCG
Bcl6	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	71	84	-	11.4839	4.63e-05	0.411	TTTCTTAGAAAATC
Bcl6	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	31	44	+	11.4839	4.63e-05	0.411	TTTCTTAGAAAATC
Hand1::Tcf3	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	3	12	+	11.8876	4.63e-05	0.93	GGTCTGGAAC
Hand1::Tcf3	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	1	10	-	11.8876	4.63e-05	0.93	GGTCTGGAAG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	16	35	+	4.94495	4.63e-05	0.0556	CCCCACATCTCCCACAAGGG
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	6	15	+	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	6	15	+	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	5	14	-	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	18	27	-	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	27	36	-	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	40	49	-	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	69	78	+	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	69	78	-	11.3367	4.63e-05	0.213	GGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	79	88	+	11.3367	4.63e-05	0.213	GGGATTTCCC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	12.1061	4.63e-05	0.585	CACACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	12.1061	4.63e-05	0.585	CACACGTGCC
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	-	1.84615	4.63e-05	0.904	GGACGGCTGTCA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	-	1.84615	4.63e-05	0.904	GGACGGCTGTCA
ZIC4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	10	24	-	11.0727	4.63e-05	0.109	GACCCCACGCCACGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	91	105	+	11.0727	4.63e-05	0.109	GACCCCACGCCACGC
EGR3	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	14	28	+	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	29	43	+	7.58621	4.63e-05	0.0378	CCCAGCCCACGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	29	43	+	7.58621	4.63e-05	0.0378	CCCAGCCCACGCCTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.0	27	41	-	7.58621	4.63e-05	0.0378	ACCCGCCCCCGAGTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.1.1	27	41	-	7.58621	4.63e-05	0.0378	ACCCGCCCCCGAGTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	27	41	-	7.58621	4.63e-05	0.0378	ACCCGCCCCCGAGTT
EGR3	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	74	88	+	7.58621	4.63e-05	0.0378	ACCCGCCCCCGAGTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	66	80	-	7.58621	4.63e-05	0.0378	CGCCGCCGCCGCCCA
EGR3	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	87	101	-	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	89	103	-	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	89	103	-	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	89	103	-	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	89	103	-	7.58621	4.63e-05	0.0378	CGCCGCCCGCGCTGG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	53	66	-	9.77586	4.63e-05	0.0307	TGCCCCACCCCTCC
RFX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	-	7.11429	4.63e-05	0.274	CATTGGTATGACAACA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	20	38	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	20	38	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	20	38	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	37	55	+	11.2097	4.63e-05	0.147	TGGGTTACCGGACCGAGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	53	71	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	53	71	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	53	71	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	53	71	+	11.2097	4.63e-05	0.147	GGGCGCGGGAAGGCGGGGC
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	-	9.07339	4.63e-05	0.848	TCACGGCTGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	-	9.07339	4.63e-05	0.848	TCACGGCTGTCA
EHF	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	2	13	+	11.0492	4.63e-05	0.123	CTTCCGGAAGTT
ESR1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	25	41	+	1.34848	4.63e-05	0.514	CAGGTCATCAGGACAGG
ESR1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	20	36	-	1.34848	4.63e-05	0.514	CAGGTCATCAGGACAGG
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	53	62	-	12.7551	4.63e-05	0.422	CCCACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	53	62	-	12.7551	4.63e-05	0.422	CCCACCTGCG
TCF4	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	73	82	-	12.7551	4.63e-05	0.422	CCCACCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	33	42	+	12.7551	4.63e-05	0.422	CCCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	33	42	+	12.7551	4.63e-05	0.422	CCCACCTGCG
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	56	+	12.7551	4.63e-05	0.422	GGCACCTGCC
Crx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	95	105	+	12.069	4.63e-05	1	CGGCGGATTAG
Crx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	95	105	+	12.069	4.63e-05	1	CGGCGGATTAG
ELK1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	27	36	+	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	54	63	+	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	47	56	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	47	56	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	52	61	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	52	61	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	79	88	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	79	88	-	10.9787	4.64e-05	0.0838	ACCGGAAACG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	47	57	+	11.2241	4.64e-05	0.0177	AACCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	47	57	+	11.2241	4.64e-05	0.0177	AACCCGCCTCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	69	79	+	11.2241	4.64e-05	0.0177	AACCCGCCTCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	+	11.8182	4.64e-05	0.055	GGCCCCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	+	11.8182	4.64e-05	0.055	GGCCCCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	-	11.8182	4.64e-05	0.055	GGCCCCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	-	11.8182	4.64e-05	0.055	GGCCCCAGGGCC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.5818	4.64e-05	0.103	CCCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.5818	4.64e-05	0.103	CCCGGAAGCG
NRL	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	15	25	-	11.1923	4.64e-05	0.823	TATTTGCTGAG
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	29	40	-	4.24138	4.64e-05	0.296	TGCCGCGTGCCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	25	36	+	4.24138	4.64e-05	0.296	TGCCGCGTGCCC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	-	12.4615	4.64e-05	0.273	TGCACGTGAT
E2F4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	42	52	-	11.7931	4.64e-05	0.046	TGGCGCGAGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	63	73	+	11.7931	4.64e-05	0.046	TGGCGCGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	63	73	+	11.7931	4.64e-05	0.046	TGGCGCGAGGA
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	20	30	-	11.8276	4.64e-05	0.241	ATTTGTGGTCT
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	75	85	-	11.8276	4.64e-05	0.241	GTCTGTGGCCA
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	20	30	+	11.8276	4.64e-05	0.241	ATTTGTGGTCT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	20	30	+	11.8276	4.64e-05	0.241	ATTTGTGGTCT
RUNX1	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	30	40	+	11.8276	4.64e-05	0.241	GTCTGTGGCCA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	32	44	+	11.2295	4.64e-05	0.0586	GCCCCTGTGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	77	89	-	11.2295	4.64e-05	0.0586	GCCCCTGTGGGCG
SP8	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	63	74	-	11.4605	4.64e-05	0.0294	GCCCCGCGCACT
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.1	24	32	-	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.2.0	24	32	-	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	24	32	-	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	24	32	-	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	24	32	-	11.9231	4.64e-05	1	GCCACTTAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	10	18	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	10	18	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	8	16	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	8	16	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	17	25	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	27	35	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	30	38	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	23	31	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	44	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	37	45	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	31	39	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	31	39	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	34	42	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	42	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	36	44	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	36	44	-	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	68	76	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	68	76	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	79	87	+	10.1379	4.64e-05	0.243	GTGAGTCAC
JDP2	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	97	105	-	10.1379	4.64e-05	0.243	GTGAGTCAC
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	80	88	+	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.2.0	80	88	+	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	80	88	+	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.1	80	88	+	11.9231	4.64e-05	1	GCCACTTAT
NKX3-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	80	88	+	11.9231	4.64e-05	1	GCCACTTAT
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	-	7.77586	4.64e-05	0.882	GGGTACAGCATGTCACA
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	-	7.77586	4.64e-05	0.882	GGGTACAGCATGTCACA
Ar	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	54	70	+	7.77586	4.64e-05	0.882	AAGAACATTGTCTCCCC
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	+	7.77586	4.64e-05	0.882	GGGTACAGCATGTCACA
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	+	7.77586	4.64e-05	0.882	GGGTACAGCATGTCACA
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	29	43	+	11.2069	4.64e-05	0.0116	CGCCTGCCCCCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	92	106	+	11.2069	4.64e-05	0.0116	TCTCTGCCCCCCGCC
SP2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	9	23	-	11.2069	4.64e-05	0.0116	TCTCTGCCCCCCGCC
MAF::NFE2	FLIPPED__Lincrna.flip.antisense__chr22:43011170..43011284,-__2685.1.0.0	8	22	-	9.62295	4.64e-05	0.415	ATGAGTAAGGAAAAT
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:43011170..43011284,+__530.1.1.0	93	107	+	9.62295	4.64e-05	0.415	ATGAGTAAGGAAAAT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:43011170..43011284,+__530.1.0.0	93	107	+	9.62295	4.64e-05	0.415	ATGAGTAAGGAAAAT
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	12.4848	4.64e-05	0.253	GGCACGTGGT
ZIC3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	73	87	+	9.1	4.64e-05	0.106	CACCCCCCCCCGCCC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	28	42	-	9.1	4.64e-05	0.106	CACCCCCCCCCGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	66	85	-	4.93578	4.64e-05	0.0556	AACCACAACACCGGAAAAGG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	66	85	-	4.93578	4.64e-05	0.0556	AACCACAACACCGGAAAAGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	66	85	-	4.93578	4.64e-05	0.0556	AACCACAACACCGGAAAAGG
RREB1	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	30	49	+	4.93578	4.64e-05	0.0556	AACCACAACACCGGAAAAGG
Foxj3	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	74	90	-	11.8442	4.64e-05	1	CGGCAATAAACATACCC
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	32	+	12.5102	4.64e-05	0.141	GACAGGTGGGC
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	32	+	12.5102	4.64e-05	0.141	GACAGGTGGGC
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	101	+	12.5102	4.64e-05	0.141	GGCAGGTGGTG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	101	+	12.5102	4.64e-05	0.141	GGCAGGTGGTG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	101	+	12.5102	4.64e-05	0.141	GGCAGGTGGTG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	23	32	+	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	-	11.7069	4.64e-05	0.126	CACAGCTGTT
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	94	103	+	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	-	11.7069	4.64e-05	0.126	CACAGCTGTT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	-	11.7069	4.64e-05	0.126	CACAGCTGTT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	105	114	-	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	105	114	-	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	105	114	-	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	105	114	-	11.7069	4.64e-05	0.126	CGCAGCTGAA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	105	114	-	11.7069	4.64e-05	0.126	CGCAGCTGAA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	79	90	-	10.949	4.64e-05	0.17	GTCCTGGGGCCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	26	37	+	11.6935	4.64e-05	0.281	GCTACCACCCCC
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	64	75	+	11.6935	4.64e-05	0.281	GCTACCACCCCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	37	46	+	11.6327	4.64e-05	0.0198	GGGGCGTAGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	37	46	+	11.6327	4.64e-05	0.0198	GGGGCGTAGC
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	25	39	+	11.7324	4.65e-05	0.341	ATAAAGAAAACAGGA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	89	103	-	11.7324	4.65e-05	0.341	ATAAAGAAAACAGGA
Myod1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	33	+	12.5102	4.65e-05	0.154	GGCACCTGCGGCT
Myod1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	107	+	12.5102	4.65e-05	0.154	GGCACCTGCGGCT
Myod1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	8	20	-	12.5102	4.65e-05	0.154	GGCACCTGCGGCT
Myod1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	82	94	-	12.5102	4.65e-05	0.154	GGCACCTGCGGCT
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	+	11.9636	4.65e-05	0.143	GGCACGCGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	-	11.9636	4.65e-05	0.143	GGCACGCGGC
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.0.0	4	20	-	10.5918	4.65e-05	0.338	AGTTGAGGCGGAAGACA
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657011..94657125,+__595.1.1.0	4	20	-	10.5918	4.65e-05	0.338	AGTTGAGGCGGAAGACA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr3:94656976..94657090,+__594.1.0.0	39	55	-	10.5918	4.65e-05	0.338	AGTTGAGGCGGAAGACA
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	31	-	11.9828	4.65e-05	0.859	CCCACCTGTC
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	31	-	11.9828	4.65e-05	0.859	CCCACCTGTC
FIGLA	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	40	49	+	11.9828	4.65e-05	0.859	CCCACCTGTC
FIGLA	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	75	-	11.9828	4.65e-05	0.859	CCCACCTGTC
MTF1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	69	82	-	7.31707	4.65e-05	0.5	TCTGCTCCCGCCCC
MTF1	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	98	111	-	7.31707	4.65e-05	0.5	TGTGCACACAGCTG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	59	69	+	11.6939	4.65e-05	0.26	TTGCTGGAAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	59	69	+	11.6939	4.65e-05	0.26	TTGCTGGAAAG
NFYA	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	5	22	+	10.0732	4.65e-05	0.142	AGCCCTTCCATTGGTCGT
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	38	+	11.8	4.65e-05	0.0893	TGCCCTCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	+	11.8	4.65e-05	0.0893	CGCCCGACGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	+	11.8	4.65e-05	0.0893	CGCCCGACGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	90	+	11.8	4.65e-05	0.0893	TGCCCTCGGCCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	90	+	11.8	4.65e-05	0.0893	TGCCCTCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	92	103	+	11.8	4.65e-05	0.0893	TACCTGGAGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	92	103	+	11.8	4.65e-05	0.0893	TACCTGGAGGCA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	100	111	+	11.8	4.65e-05	0.0893	AACCTTGGGGCA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	12	-	11.8	4.65e-05	0.0893	CCCCCTGAGGCT
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	-	11.8	4.65e-05	0.0893	CGCCCGACGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	+	10.931	4.65e-05	0.0554	TGCCCGCCAGGGG
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	-	10.931	4.65e-05	0.0554	TGCCCGCCAGGGG
REL	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	62	71	+	11.7071	4.65e-05	0.297	GGGTCATTCC
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	36	48	+	11.7317	4.65e-05	1	CAAGTGTGAAAGA
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	36	48	+	11.7317	4.65e-05	1	CAAGTGTGAAAGA
EOMES	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	36	48	+	11.7317	4.65e-05	1	CAAGTGTGAAAGA
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	36	48	+	11.7317	4.65e-05	1	CAAGTGTGAAAGA
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	100	112	-	11.7317	4.65e-05	1	CAAGTGTGAAAGA
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	100	112	-	11.7317	4.65e-05	1	CAAGTGTGAAAGA
DUX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	21	31	+	11.8085	4.65e-05	1	TAAATCAATCT
DUX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.0.0	21	31	+	11.8085	4.65e-05	1	TAAATCAATCT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	8	28	-	10.3673	4.65e-05	0.016	GGAGCAGCGGGGAGGAAGTCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	23	43	-	10.3673	4.65e-05	0.016	AAAGGAAAAGGGAAAAAAAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	48	68	-	10.3673	4.65e-05	0.016	AGAGGAGCGAGGGAGAGACTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	56	76	-	10.3673	4.65e-05	0.016	AGGGGTGGCGGAGGATAGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	56	76	-	10.3673	4.65e-05	0.016	AGGGGTGGCGGAGGATAGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	56	76	-	10.3673	4.65e-05	0.016	AGGGGTGGCGGAGGATAGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	56	76	-	10.3673	4.65e-05	0.016	AGGGGTGGCGGAGGATAGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	60	80	-	10.3673	4.65e-05	0.016	GAATCCGGGGAGGGGAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	60	80	-	10.3673	4.65e-05	0.016	GAATCCGGGGAGGGGAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	20	40	+	10.3673	4.65e-05	0.016	AGGTGTGGAGGGGGCGGAGTG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	41	61	+	10.3673	4.65e-05	0.016	GGAGCAGCGGGGAGGAAGTCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	46	66	+	10.3673	4.65e-05	0.016	AGAGGAGCGAGGGAGAGACTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	55	75	+	10.3673	4.65e-05	0.016	GGGGCAACCAGGGGAAGATGG
Nr2f6	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	15	28	-	9.5303	4.65e-05	0.339	AGAGTCATAGGCCA
Nr2f6	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	87	100	+	9.5303	4.65e-05	0.339	AGAGTCATAGGCCA
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	43	-	11.5319	4.65e-05	0.32	CTTCATGACGTCACG
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	43	-	11.5319	4.65e-05	0.32	CTTCATGACGTCACG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	43	-	11.5319	4.65e-05	0.32	CTTCATGACGTCACG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	43	-	11.5319	4.65e-05	0.32	CTTCATGACGTCACG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	43	-	11.5319	4.65e-05	0.32	CTTCATGACGTCACG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	94	112	+	9.55738	4.66e-05	0.118	CCTCCTGCAGAGGGTGGGT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	2	21	+	4.92661	4.66e-05	0.0556	CACCCTCCCTCCCCCACTCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	2	21	+	4.92661	4.66e-05	0.0556	CACCCTCCCTCCCCCACTCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	9	23	-	11.4054	4.66e-05	0.176	CTAGGCCAAAGTCCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	9	23	-	11.4054	4.66e-05	0.176	CTAGGCCAAAGTCCT
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	19	33	-	11.4054	4.66e-05	0.176	GCAGGGGAGGGGCGA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	25	39	-	11.4054	4.66e-05	0.176	GTGGGGGAGGGTGGA
Rhox11	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	8	24	-	11.75	4.66e-05	1	GCGGCGCTGTTACTAGG
Rhox11	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	8	24	-	11.75	4.66e-05	1	GCGGCGCTGTTACTAGG
Rhox11	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	70	86	+	11.75	4.66e-05	1	GCGGCGCTGTTACTAGG
Rhox11	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	70	86	+	11.75	4.66e-05	1	GCGGCGCTGTTACTAGG
USF2	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	30	40	+	12.0612	4.66e-05	0.131	GGCATGTGAGC
EGR3	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	63	77	-	7.56897	4.66e-05	0.0379	CTCCTCCTCCGCGCC
SPI1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	38	51	+	4.29091	4.66e-05	0.174	AAACAGCGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	77	-	4.29091	4.66e-05	0.174	AAACAGCGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	77	-	4.29091	4.66e-05	0.174	AAACAGCGGAAGTC
ZBTB7B	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	71	82	-	11.4483	4.66e-05	0.365	CCGCCCCCCGCA
ZBTB7B	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	33	44	+	11.4483	4.66e-05	0.365	CCGCCCCCCGCA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	35	46	+	11.4483	4.66e-05	0.365	CCGCCCCCCGCA
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	59	70	+	11.4483	4.66e-05	0.365	CCGCCCCCCGCA
E2F4	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	32	42	-	11.7759	4.66e-05	0.0461	TGGCGGGAATT
E2F4	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	73	83	+	11.7759	4.66e-05	0.0461	TGGCGGGAATT
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	53	+	8.06122	4.66e-05	0.16	TTTGACGTCATC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	62	73	-	8.06122	4.66e-05	0.16	TTTGACGTCATC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	38	48	+	11.7308	4.66e-05	0.0132	GTTCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	38	48	+	11.7308	4.66e-05	0.0132	GTTCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	38	48	+	11.7308	4.66e-05	0.0132	GTTCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	38	48	+	11.7308	4.66e-05	0.0132	GTTCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	63	73	-	11.7308	4.66e-05	0.0132	ACTCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	63	73	-	11.7308	4.66e-05	0.0132	ACTCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	63	73	-	11.7308	4.66e-05	0.0132	ACTCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	67	77	-	11.7308	4.66e-05	0.0132	GTTCCGCCTCT
SP3	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	55	65	+	11.5935	4.66e-05	0.0191	CCCACCCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	67	77	+	11.5935	4.66e-05	0.0191	CCCACCCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	67	77	+	11.5935	4.66e-05	0.0191	CCCACCCCCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	68	78	-	11.5935	4.66e-05	0.0191	CCCACCCCCCT
Lhx3	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	37	49	-	11.1287	4.66e-05	1	TATTTAATTTACT
FOS	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	+	11.9149	4.66e-05	0.217	GGTGAGTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	+	11.9149	4.66e-05	0.217	GGTGAGTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	+	11.9149	4.66e-05	0.217	GGTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	+	11.9149	4.66e-05	0.217	GGTGAGTCAGC
Arx	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	42	58	+	11.619	4.66e-05	1	TTTTGTTAATTAAATGT
ESR2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	49	63	+	11.3846	4.66e-05	0.426	AGGGCAGGGTGGGCC
ESR2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	53	67	-	11.3846	4.66e-05	0.426	AGGGCAGGGTGGGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	28	41	-	11.0577	4.66e-05	0.0202	TACCCTCCTCCTCG
EGR1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	41	54	+	11.0577	4.66e-05	0.0202	CTCCCGCTTCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	52	65	+	11.0577	4.66e-05	0.0202	TTCCCACCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	65	78	+	11.0577	4.66e-05	0.0202	GCTCTGCCCACACA
EGR1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	61	74	-	11.0577	4.66e-05	0.0202	CTCCCGCTTCCACC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	98	111	+	11.0577	4.66e-05	0.0202	CTCATGCCCCCACC
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	26	40	-	11.0172	4.66e-05	0.393	CTGTCCAAGGTCTAG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	23	36	+	7.46809	4.66e-05	0.0994	GGCTTCCCGCAGTG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	23	36	+	7.46809	4.66e-05	0.0994	GGCTTCCCGCAGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	23	36	+	7.46809	4.66e-05	0.0994	GGCTTCCCGCAGTG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	23	36	+	7.46809	4.66e-05	0.0994	GGCTTCCCGCAGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	24	37	-	7.46809	4.66e-05	0.0994	ACCCCCCCACCGAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	24	37	-	7.46809	4.66e-05	0.0994	ACCCCCCCACCGAG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	43	56	+	7.46809	4.66e-05	0.0994	AGCTACCTGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	43	56	+	7.46809	4.66e-05	0.0994	AGCTACCTGCTGTG
SREBF2	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	16	25	-	12.0787	4.66e-05	0.871	CTGGGGTGAG
SREBF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	90	99	+	12.0787	4.66e-05	0.871	CTGGGGTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	90	99	+	12.0787	4.66e-05	0.871	CTGGGGTGAG
SREBF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	90	99	+	12.0787	4.66e-05	0.871	CTGGGGTGAG
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	90	99	+	12.0787	4.66e-05	0.871	CTGGGGTGAG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	87	99	-	11.0492	4.66e-05	0.0641	AGCCCCGCCGGCC
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	12	26	+	8.43421	4.66e-05	0.224	GCGGAGACGCAGCGC
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	17	31	+	8.43421	4.66e-05	0.224	GCAGTGACTCTGCTA
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	84	98	-	8.43421	4.66e-05	0.224	GCAGTGACTCTGCTA
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	89	103	-	8.43421	4.66e-05	0.224	GCGGAGACGCAGCGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	89	103	-	8.43421	4.66e-05	0.224	GCGGAGACGCAGCGC
Creb5	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	37	48	+	9.83636	4.66e-05	0.195	GGTGACGTCAGA
Creb5	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	78	-	9.83636	4.66e-05	0.195	GGTGACGTCAGA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	55	65	+	12.0577	4.66e-05	0.335	GTATTGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	55	65	+	12.0577	4.66e-05	0.335	GTATTGACTCA
BATF::JUN	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	50	60	-	12.0577	4.66e-05	0.335	GTATTGACTCA
NFE2	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	25	35	-	6.85714	4.66e-05	0.275	AATGACCCATT
Sox3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	35	44	-	12.3621	4.66e-05	0.659	CCATTGTCTT
Sox3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	71	80	+	12.3621	4.66e-05	0.659	CCATTGTCTT
SREBF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	-	12.0976	4.66e-05	0.472	GTCACCTGAC
Foxk1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	16	32	+	11.3896	4.66e-05	1	CTTGAGTAAACAAAGTG
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	21	37	-	11.3896	4.66e-05	1	CTTGAGTAAACAAAGTG
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	21	37	-	11.3896	4.66e-05	1	CTTGAGTAAACAAAGTG
Foxk1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	78	94	+	11.3896	4.66e-05	1	CTTGAGTAAACAAAGTG
Foxk1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	83	99	-	11.3896	4.66e-05	1	CTTGAGTAAACAAAGTG
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	2	12	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	2	12	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	4	14	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	4	14	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	4	14	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	4	14	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	10	20	+	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	10	20	+	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	12	22	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	17	27	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	17	27	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	17	27	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	17	27	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	17	27	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	27	37	+	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	27	37	+	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	29	39	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	32	42	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	32	42	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	32	42	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	32	42	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	32	42	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	46	56	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	46	56	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	46	56	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	46	56	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	50	60	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	50	60	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	54	64	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	55	65	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	57	67	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	57	67	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	64	74	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	64	74	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	64	74	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	64	74	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	64	74	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	73	83	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	76	86	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	86	96	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	88	98	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	93	103	+	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	101	111	+	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	4	14	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	9	19	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	10	20	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	10	20	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	10	20	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	10	20	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	12	22	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	12	22	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	12	22	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	12	22	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	15	25	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	15	25	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	16	26	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	16	26	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	16	26	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	16	26	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	17	27	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	17	27	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	17	27	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	18	28	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	18	28	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	18	28	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	18	28	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	19	29	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	20	30	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	20	30	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	21	31	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	21	31	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	21	31	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	21	31	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	25	35	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	29	39	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	29	39	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	29	39	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	29	39	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	32	42	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	38	48	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	41	51	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	42	52	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	43	53	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	46	56	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	46	56	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	50	60	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	51	61	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	51	61	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	51	61	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	58	68	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	63	73	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	67	77	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	67	77	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	72	82	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	72	82	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	75	85	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	76	86	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	76	86	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	78	88	-	11.6364	4.67e-05	0.0469	GGCTCCGCCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	88	98	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	93	103	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	101	111	-	11.6364	4.67e-05	0.0469	AGCCCCGCCCC
RORA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	79	88	-	12.5281	4.67e-05	0.973	TTCCAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	79	88	-	12.5281	4.67e-05	0.973	TTCCAGGTCA
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr5:162864260..162864374,-__670.1.0.0	84	96	-	11.4754	4.67e-05	0.359	CCGGCTGGCAGCC
MYF6	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	83	92	+	11.3636	4.67e-05	1	AACAACTGCC
SP3	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	15	25	+	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	31	41	+	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	31	41	+	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	31	41	+	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	31	41	+	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	90	100	-	11.561	4.67e-05	0.0191	GGCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	90	100	-	11.561	4.67e-05	0.0191	GGCCCGCCCAC
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	2	19	-	5.91379	4.67e-05	0.25	GAGGCGCGCCCCTGTGAT
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	2	19	-	5.91379	4.67e-05	0.25	GAGGCGCGCCCCTGTGAT
NR2C2	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	7	21	-	10.2286	4.67e-05	0.119	CCAGGGCAGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	38	52	-	10.2286	4.67e-05	0.119	CCAGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	38	52	-	10.2286	4.67e-05	0.119	CCAGGGCAGGGGCGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	94	108	+	10.2286	4.67e-05	0.119	CCAGGGCAGGGGCGG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	60	73	+	10.5714	4.67e-05	0.251	CAGCCACGTGACTG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	16	35	+	4.91743	4.67e-05	0.0557	CCCCGCCACCCCAGCCCCCG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	39	53	-	11.0606	4.67e-05	0.102	CCCTCGCGGCGCCGC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	34	48	+	11.0606	4.67e-05	0.102	CTCCCGCGCCCGCTC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	62	76	+	11.0606	4.67e-05	0.102	CCCTCGCGGCGCCGC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	33	43	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	46	56	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	71	81	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	89	99	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	89	99	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	89	99	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	89	99	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	94	104	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	94	104	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	94	104	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	94	104	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	100	110	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	100	110	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	100	110	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	100	110	+	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	101	111	+	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	4	14	-	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	4	14	-	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	4	14	-	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	4	14	-	10.9636	4.67e-05	0.0173	GCGCACGCCCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	34	44	-	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	50	60	-	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	50	60	-	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	59	69	-	10.9636	4.67e-05	0.0173	GCCCCTGCCCG
Crem	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	15	24	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	15	24	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	28	37	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	29	38	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	29	38	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	29	38	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	29	38	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	29	38	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	30	39	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	30	39	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	30	39	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	30	39	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	35	44	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	35	44	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	37	46	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	52	61	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	52	61	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	76	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	86	95	+	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	20	29	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	35	44	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	35	44	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	39	48	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	54	63	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	69	78	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	78	87	-	12.3607	4.67e-05	0.266	CGTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	91	100	-	12.3607	4.67e-05	0.266	CGTGACGTCA
ELF5	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	29	-	11.8	4.67e-05	0.135	TACAGGAAGTG
ELF5	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	36	46	+	11.8	4.67e-05	0.135	AAAAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	33	43	-	11.8	4.67e-05	0.135	AAAAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	33	43	-	11.8	4.67e-05	0.135	AAAAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	60	70	+	11.8	4.67e-05	0.135	TACAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	60	70	+	11.8	4.67e-05	0.135	TACAGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	69	79	-	11.8	4.67e-05	0.135	AAAAGGAAGTG
EBF1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	25	38	+	10.0656	4.67e-05	0.365	AATCCCGTGGGCCT
EBF1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	77	90	-	10.0656	4.67e-05	0.365	AATCCCGTGGGCCT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	22	37	-	10.9455	4.67e-05	0.0378	CTCCCCCCACCCCTGA
EGR4	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	67	82	+	10.9455	4.67e-05	0.0378	CTCCCCCCACCCCTGA
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	10.8103	4.67e-05	0.241	GTCACGTGCC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	10.8103	4.67e-05	0.241	GTCACGTGCC
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	85	95	-	12.1633	4.67e-05	0.318	TGTTCTAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	85	95	-	12.1633	4.67e-05	0.318	TGTTCTAAGAA
Barhl1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	+	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	+	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	-	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	-	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	-	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	-	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	-	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	+	9.77358	4.67e-05	1	TCTAATTGGC
Barhl1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	-	9.77358	4.67e-05	1	TCTAATTGGC
NFYA	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	2	19	-	10.061	4.68e-05	0.142	AGCCTCCTGATTGGGCGT
SP8	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	8	19	+	11.4474	4.68e-05	0.0296	GCCACGCCTATA
SP8	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	36	47	-	11.4474	4.68e-05	0.0296	CCCCCGCCCCAC
SP8	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	96	107	-	11.4474	4.68e-05	0.0296	GCCACGCCTATA
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	27	43	-	4.42623	4.68e-05	0.563	AGGTCAGGCGCGGGTGG
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	27	43	-	4.42623	4.68e-05	0.563	AGGTCAGGCGCGGGTGG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.0.0	49	60	+	11.4394	4.68e-05	0.109	CAACGTCCTCCT
Bcl6	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	72	85	-	11.4677	4.68e-05	0.411	TTTCCTGGAGTTGA
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	7	17	+	11.6	4.68e-05	1	AAGGTGTCATG
TBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	7	17	+	11.6	4.68e-05	1	AAGGTGTCATG
TBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	27	37	+	11.6	4.68e-05	1	AAGGTGTCATG
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	27	37	+	11.6	4.68e-05	1	AAGGTGTCATG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	26	39	-	6.73469	4.68e-05	0.365	TGGCAGTGCGCCTG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	76	89	+	6.73469	4.68e-05	0.365	TGGCAGTGCGCCTG
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	76	89	+	6.73469	4.68e-05	0.365	TGGCAGTGCGCCTG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	76	89	+	6.73469	4.68e-05	0.365	TGGCAGTGCGCCTG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	76	89	+	6.73469	4.68e-05	0.365	TGGCAGTGCGCCTG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	84	94	+	11.4098	4.68e-05	0.151	CACAGGAAACA
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	84	94	+	11.4098	4.68e-05	0.151	CACAGGAAACA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	-	10.9138	4.68e-05	0.0554	CCCCCGCGCGGCA
Znf423	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	5	19	+	6.96629	4.68e-05	0.266	GCCCCCCTTGGTTCT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	2	16	+	11.0545	4.68e-05	0.109	GAGCCCCCGGGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	56	70	+	11.0545	4.68e-05	0.109	GCCTCCCTGTGGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	56	70	+	11.0545	4.68e-05	0.109	GCCTCCCTGTGGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	49	63	-	11.0545	4.68e-05	0.109	GATTCCCTGCTGTGA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	49	63	-	11.0545	4.68e-05	0.109	GATTCCCTGCTGTGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	49	63	-	11.0545	4.68e-05	0.109	GATTCCCTGCTGTGA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	10	21	-	11.5286	4.68e-05	0.217	GGCACCCACCAC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	10	21	-	11.5286	4.68e-05	0.217	GGCACCCACCAC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	11	22	+	11.5286	4.68e-05	0.217	AGCGACCACAAT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	47	58	+	11.5286	4.68e-05	0.217	AGCGACCACAAT
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	100	111	+	11.5286	4.68e-05	0.217	GGCACCCACCAC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	100	111	+	11.5286	4.68e-05	0.217	GGCACCCACCAC
RXRB	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	34	47	+	2.12727	4.68e-05	0.505	GGGGTCAGGGGTGC
RXRB	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	68	81	-	2.12727	4.68e-05	0.505	GGGGTCAGGGGTGC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	18	32	-	10.4394	4.68e-05	0.298	TGGGTTTCCCTTTAT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	18	32	-	10.4394	4.68e-05	0.298	TGGGTTTCCCTTTAT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	10	24	-	11.1897	4.68e-05	0.0116	CTCCTGCCCCCATCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	10	24	-	11.1897	4.68e-05	0.0116	CTCCTGCCCCCATCC
SP2	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	49	63	-	11.1897	4.68e-05	0.0116	TCCCCTCCCCGCTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	67	81	-	11.1897	4.68e-05	0.0116	ACACCGCCCCTCTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	67	81	-	11.1897	4.68e-05	0.0116	ACACCGCCCCTCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	67	81	-	11.1897	4.68e-05	0.0116	ACACCGCCCCTCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	67	81	-	11.1897	4.68e-05	0.0116	ACACCGCCCCTCTGC
ELF3	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	60	72	-	9.31034	4.68e-05	0.147	ATGCCGGAAGCGG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	94	107	-	9.14754	4.68e-05	0.185	CACCCCACACCAGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	94	107	-	9.14754	4.68e-05	0.185	CACCCCACACCAGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	94	107	-	9.14754	4.68e-05	0.185	CACCCCACACCAGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	94	107	-	9.14754	4.68e-05	0.185	CACCCCACACCAGG
FLI1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	11.7872	4.68e-05	0.111	AGCGGAAATG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	11.7872	4.68e-05	0.111	AGCGGAAATG
RREB1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	62	81	-	4.90826	4.68e-05	0.0558	CCTCCTCCCACCCGACCCGG
FOXP1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	5	19	+	11.7183	4.68e-05	0.341	TCTAAGAAAACAAGG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	76	90	+	11.7183	4.68e-05	0.341	TCTAAGAAAACAAGG
FOXP1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	25	39	-	11.7183	4.68e-05	0.341	TCTAAGAAAACAAGG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	96	110	-	11.7183	4.68e-05	0.341	TCTAAGAAAACAAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	30	43	+	6.7449	4.68e-05	0.0719	GAGGGCTTGCGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	30	43	+	6.7449	4.68e-05	0.0719	GAGGGCTTGCGGGG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	-	11.0328	4.68e-05	0.0641	CGCCTGTGGGGCG
HIC2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	8	16	+	11.3636	4.68e-05	0.302	GTGCCCCCC
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	21	29	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	21	29	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	26	34	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	26	34	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	26	34	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	26	34	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	31	39	-	11.3636	4.68e-05	0.302	GTGCCCCCC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	46	54	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	46	54	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	47	55	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	47	55	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	47	55	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	46	54	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	60	68	-	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	78	86	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	78	86	+	11.3636	4.68e-05	0.302	ATGCCCAGT
HIC2	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	81	89	+	11.3636	4.68e-05	0.302	ATGCCCAGT
TCF4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	44	-	12.7347	4.68e-05	0.422	CCCACCTGCC
TCF4	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	9	18	+	12.7347	4.68e-05	0.422	CCCACCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	69	78	+	12.7347	4.68e-05	0.422	CCCACCTGCC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	69	78	+	12.7347	4.68e-05	0.422	CCCACCTGCC
TCF4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	80	+	12.7347	4.68e-05	0.422	CCCACCTGCC
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	31	40	+	11.8361	4.68e-05	0.224	CGGCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	31	40	+	11.8361	4.68e-05	0.224	CGGCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	31	40	+	11.8361	4.68e-05	0.224	CGGCACGTGG
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	60	71	+	11.6386	4.68e-05	1	TTATGTATATTT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	60	71	+	11.6386	4.68e-05	1	TTATGTATATTT
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	55	66	-	11.6386	4.68e-05	1	TTATGTATATTT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	55	66	-	11.6386	4.68e-05	1	TTATGTATATTT
Tcf21	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	76	89	-	7.60526	4.69e-05	0.56	GTGCCAGCTGGCCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	-	11.8	4.69e-05	0.0694	GGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	-	11.8	4.69e-05	0.0694	GGCCTCGGGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	-	11.8	4.69e-05	0.0694	GGCCTCGGGCA
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	29	43	+	8.42105	4.69e-05	0.224	TGCATGTGTCAGCGG
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	72	86	-	8.42105	4.69e-05	0.224	TGCATGTGTCAGCGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	26	35	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	26	35	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	26	35	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	26	35	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	34	43	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	43	52	+	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	43	52	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	54	63	+	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	57	66	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	57	66	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	57	66	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	57	66	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	63	72	-	11.5612	4.69e-05	0.0199	AGGGCGGGCC
Klf4	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	72	81	+	11.5612	4.69e-05	0.0199	AGGGCGGGCC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	11.7931	4.69e-05	0.123	ACCGGAAGAG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	11.7931	4.69e-05	0.123	ACCGGAAGAG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	2	16	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	2	16	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	64	78	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	64	78	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	64	78	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	64	78	+	9.29508	4.69e-05	0.0577	AGCCCCGCCCCGTCC
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	19	31	+	10.8333	4.69e-05	0.873	CTTAATGTTTAAC
SNAI2	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	57	65	+	12.0465	4.69e-05	0.456	TGCAGGTGT
SNAI2	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	85	93	-	12.0465	4.69e-05	0.456	TGCAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	105	113	-	12.0465	4.69e-05	0.456	TGCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	105	113	-	12.0465	4.69e-05	0.456	TGCAGGTGT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	14	31	+	-11.8289	4.69e-05	0.0427	GGAAGTGATGATGCAGGA
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	38	49	+	4.67241	4.69e-05	0.189	CGCCCCGTGCCT
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	38	49	+	4.67241	4.69e-05	0.189	CGCCCCGTGCCT
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	56	69	+	6.72449	4.69e-05	0.365	TGGCAGAACACCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	56	69	+	6.72449	4.69e-05	0.365	TGGCAGAACACCAG
ELK4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	87	-	11.9455	4.69e-05	0.058	ACACTTCCTGT
ELK4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	28	38	+	11.9455	4.69e-05	0.058	ACACTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	55	65	+	11.9455	4.69e-05	0.058	ACACTTCCTGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	-	11.8846	4.69e-05	0.0744	GGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	-	11.8846	4.69e-05	0.0744	GGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	-	11.8846	4.69e-05	0.0744	GGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	-	11.8846	4.69e-05	0.0744	GGCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	-	11.8846	4.69e-05	0.0744	GGCCTCGGGCG
RELA	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	3	12	+	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	1	10	-	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	1	10	-	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	5	14	-	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	5	14	-	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	105	114	+	11.2653	4.69e-05	0.213	GGGGAATCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	103	112	-	11.2653	4.69e-05	0.213	GGGGAATCCC
ELF4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	30	-	10.0656	4.69e-05	0.1	GTACAGGAAGTG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	34	44	+	11.9184	4.69e-05	0.198	CTGTGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	77	87	+	11.9184	4.69e-05	0.198	CTGTGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	17	27	-	11.9184	4.69e-05	0.198	CTGTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	31	41	-	11.9184	4.69e-05	0.198	CTGTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	31	41	-	11.9184	4.69e-05	0.198	CTGTGAGTCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	23	33	+	11.7115	4.69e-05	0.0133	TTCCCTCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	23	33	+	11.7115	4.69e-05	0.0133	TTCCCTCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	30	40	+	11.7115	4.69e-05	0.0133	TTCCCTCCCAC
LHX6	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	11.9273	4.69e-05	1	ATTAATTAAC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	4	14	+	11.9636	4.69e-05	0.0517	GGCCCGAGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	-	11.9636	4.69e-05	0.0517	CGCCCGAGGGG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	-	11.9636	4.69e-05	0.0517	CGCCCGAGGGG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	8	20	+	3.59184	4.69e-05	0.242	TGGTGATCCACCA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	22	34	+	3.59184	4.69e-05	0.242	GAGGGGATCCCCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	2	15	+	9.74138	4.69e-05	0.0311	CTCCCCGCCCACCC
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	11	25	+	11.4038	4.69e-05	0.335	CGGTGTCAAAGGCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	11	25	+	11.4038	4.69e-05	0.335	CGGTGTCAAAGGCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	11	25	+	11.4038	4.69e-05	0.335	CGGTGTCAAAGGCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	11	25	+	11.4038	4.69e-05	0.335	CGGTGTCAAAGGCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	11	25	+	11.4038	4.69e-05	0.335	CGGTGTCAAAGGCCG
Ar	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	45	61	+	7.74138	4.7e-05	0.882	AGGAACTTCCTGTCCCG
Ar	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	54	70	-	7.74138	4.7e-05	0.882	AGGAACTTCCTGTCCCG
RARA	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	21	38	-	-7.65152	4.7e-05	1	CGGGTCAGACCGTCATTG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	30	39	+	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	30	39	+	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	40	49	-	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	46	55	-	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	46	55	-	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	46	55	-	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	60	69	+	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	66	75	+	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	66	75	+	11.2959	4.7e-05	0.23	CATCACGTGT
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	66	75	+	11.2959	4.7e-05	0.23	CATCACGTGT
TFEB	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	33	42	+	12.0192	4.7e-05	0.135	ACCATGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	29	38	-	12.0192	4.7e-05	0.135	ACCATGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	77	86	+	12.0192	4.7e-05	0.135	ACCATGTGAC
TFEB	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	73	82	-	12.0192	4.7e-05	0.135	ACCATGTGAC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	-	11.9455	4.7e-05	0.143	GGCACGTGGG
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	+	11.9455	4.7e-05	0.143	GGCACGTGGG
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	+	11.9455	4.7e-05	0.143	GGCACGTGGG
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	-	11.9455	4.7e-05	0.143	GGCACGTGGG
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	-	11.9455	4.7e-05	0.143	GGCACGTGGG
E2F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	48	65	-	4.56364	4.7e-05	1	AAAAAAGGCGCACACCTC
E2F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	48	65	-	4.56364	4.7e-05	1	AAAAAAGGCGCACACCTC
ETV6	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	53	62	+	11.9423	4.7e-05	0.0944	CCAGGAAGTA
ETV6	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	55	64	+	11.9423	4.7e-05	0.0944	CCAGGAAGTA
ETV6	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	21	30	-	11.9423	4.7e-05	0.0944	CCAGGAAGTA
ETV6	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	51	60	-	11.9423	4.7e-05	0.0944	CCAGGAAGTA
ETV6	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	53	62	-	11.9423	4.7e-05	0.0944	CCAGGAAGTA
HLTF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	91	100	+	8.79268	4.7e-05	1	AACCTTTTCC
HLTF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	91	100	+	8.79268	4.7e-05	1	AACCTTTTCC
HLTF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	14	23	-	8.79268	4.7e-05	1	AACCTTTTGC
HLTF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	14	23	-	8.79268	4.7e-05	1	AACCTTTTGC
HLTF	WILDTYPE__Enhancer.noflip.NA__chr5:71643905..71644019,+__1913.1.0.0	56	65	-	8.79268	4.7e-05	1	AACCATATCT
NKX2-3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	19	28	-	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	19	28	-	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	19	28	-	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	46	55	-	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	60	69	+	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	60	69	+	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	60	69	+	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	60	69	+	12.0385	4.7e-05	1	GGCACTTAAC
NKX2-3	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	87	96	+	12.0385	4.7e-05	1	GGCACTTAAC
ETV3	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.662	4.7e-05	0.12	AGCGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.662	4.7e-05	0.12	AGCGGAAGTC
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	37	51	-	10.2143	4.7e-05	0.119	CAGGGTTGGGGGTGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	37	51	-	10.2143	4.7e-05	0.119	CAGGGTTGGGGGTGA
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	12.0192	4.7e-05	0.273	ACCACGTGCC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	62	71	+	11.5354	4.7e-05	0.165	CAAGGGGGAA
TFEC	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	11.9024	4.7e-05	0.154	AGCACGTGGC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	11.9024	4.7e-05	0.154	AGCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	11.9024	4.7e-05	0.154	AGCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	11.9024	4.7e-05	0.154	AGCACGTGGC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	30	40	+	11.8364	4.7e-05	0.182	CTGTGAGTCAT
FOSL2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	35	45	+	11.8364	4.7e-05	0.182	TTGTGAGTCAC
Nr5a2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	86	100	+	11	4.7e-05	0.393	GTGACCAAGGCTAGC
PRDM1	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	7	21	+	11.0909	4.7e-05	0.312	AGTGAGAGAAAGCGG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	23	34	-	11.6774	4.7e-05	0.281	GCCCCCACCGAT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	45	56	-	11.6774	4.7e-05	0.281	GCCCCCACCGAT
FEV	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	12.0192	4.7e-05	0.122	AGCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	12.0192	4.7e-05	0.122	AGCGGAAGTC
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	+	10.8654	4.7e-05	1	GGCATATGCT
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	+	10.8654	4.7e-05	1	GGCATATGCT
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	+	11.1967	4.7e-05	0.0586	TGCCCTTCAGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	-	11.1967	4.7e-05	0.0586	TGCCCTTCAGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	-	11.1967	4.7e-05	0.0586	TGCCCTTCAGGGG
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	+	11.1967	4.7e-05	0.0586	TGCCCTTCAGGGG
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	-	11.1967	4.7e-05	0.0586	TGCCCTTCAGGGG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	62	82	+	9.85484	4.7e-05	0.174	TTCCGCTTTTGCTTCTTCCTC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	14	24	+	11.2959	4.7e-05	0.285	CTCCACGTGGT
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	101	-	11.2959	4.7e-05	0.285	CTCCACGTGGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	27	47	-	10.3469	4.7e-05	0.0161	TGTGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	76	-	10.3469	4.7e-05	0.0161	CGGGGCGGGGTGGGGAGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	58	78	-	10.3469	4.7e-05	0.0161	AAGGCAGCGGCGCGGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	78	98	-	10.3469	4.7e-05	0.0161	GGGACAGCAAGGAAAAGAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	78	98	-	10.3469	4.7e-05	0.0161	GGGACAGCAAGGAAAAGAGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	7	27	+	10.3469	4.7e-05	0.0161	AGGGGGGAGGAGGAGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	24	44	+	10.3469	4.7e-05	0.0161	TGTGCAGGAAGCAGGGGGAGT
ZNF263	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	39	59	+	10.3469	4.7e-05	0.0161	CGGGGCGGGGTGGGGAGGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	81	101	+	10.3469	4.7e-05	0.0161	GGTGGAGCTGGAAAGGTGGAG
INSM1	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	21	32	+	10.9082	4.7e-05	0.17	AGGCTGGGGGTG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	87	96	+	11.8652	4.7e-05	0.93	CGTCTGGCTA
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	87	96	+	11.8652	4.7e-05	0.93	CGTCTGGCTA
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	87	96	+	11.8652	4.7e-05	0.93	CGTCTGGCTA
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	20	-	10.5571	4.7e-05	0.251	GGGTTACGTCACCA
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	20	-	10.5571	4.7e-05	0.251	GGGTTACGTCACCA
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	20	-	10.5571	4.7e-05	0.251	GGGTTACGTCACCA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	20	-	10.5571	4.7e-05	0.251	GGGTTACGTCACCA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	+	11.7818	4.7e-05	0.0893	GGCCCCGAGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	+	11.7818	4.7e-05	0.0893	GGCCCCGAGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	-	11.7818	4.7e-05	0.0893	GGCCCCGAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	-	11.7818	4.7e-05	0.0893	GGCCCCGAGGCT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	11.7455	4.7e-05	0.108	AGCGGAAGCA
ETV1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	11.7455	4.7e-05	0.108	AGCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	11.7455	4.7e-05	0.108	ACCGGAAACC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	11.7455	4.7e-05	0.108	ACCGGAAACC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	9	19	+	11.5528	4.7e-05	0.0192	CCCCCCCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	9	19	+	11.5528	4.7e-05	0.0192	CCCCCCCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	40	+	11.5528	4.7e-05	0.0192	TCCCCTCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	26	36	-	11.5528	4.7e-05	0.0192	CCCCCCCCCAC
GCM2	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	16	25	+	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	25	34	+	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	25	34	+	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	25	34	+	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	25	34	+	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	1	10	-	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	1	10	-	11.7213	4.7e-05	0.718	GATGGGGGTG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	64	73	-	11.7213	4.7e-05	0.718	GATGGGGGTG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	56	69	+	4.25455	4.7e-05	0.174	TAAAAAGGGAAGAA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	56	69	+	4.25455	4.7e-05	0.174	TAAAAAGGGAAGAA
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.0.0	83	96	-	4.25455	4.7e-05	0.174	TAAAAAGGGAAGAA
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.1.0	83	96	-	4.25455	4.7e-05	0.174	TAAAAAGGGAAGAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	19	36	+	-11.8421	4.71e-05	0.0427	GGAGGGAAGGGAAGGCGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	36	53	+	-11.8421	4.71e-05	0.0427	GGAGGGAAGGGAAGGCGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	62	79	-	-11.8421	4.71e-05	0.0427	GGAGGGAAGGGAAGGCGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	73	90	-	-11.8421	4.71e-05	0.0427	AGAGGGAAGGGAGTTAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	73	90	-	-11.8421	4.71e-05	0.0427	AGAGGGAAGGGAGTTAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	73	90	-	-11.8421	4.71e-05	0.0427	AGAGGGAAGGGAGTTAGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	73	90	-	-11.8421	4.71e-05	0.0427	AGAGGGAAGGGAGTTAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	73	90	-	-11.8421	4.71e-05	0.0427	AGAGGGAAGGGAGTTAGT
ELF3	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	52	64	+	9.2931	4.71e-05	0.147	TAGCAGGAAGAAA
ELF3	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	76	88	-	9.2931	4.71e-05	0.147	TAGCAGGAAGAAA
Nfe2l2	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	14	28	-	10.5606	4.71e-05	0.292	GGCGCTGACGCAGCA
Nfe2l2	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	87	101	+	10.5606	4.71e-05	0.292	GGCGCTGACGCAGCA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	6	19	+	6.72449	4.71e-05	0.0719	GGGGCGCAGAGTGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	96	109	-	6.72449	4.71e-05	0.0719	GGGGCGCAGAGTGG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	3	13	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	3	13	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	3	13	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	3	13	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	9	19	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	27	37	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	27	37	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	42	52	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	42	52	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	60	70	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	60	70	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	60	70	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	60	70	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	104	114	+	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	1	11	-	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	10	20	-	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	96	106	-	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	100	110	-	10.9455	4.71e-05	0.0173	GCGCGCGTGCG
HOXC10	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	39	48	-	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	85	94	-	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	21	30	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	21	30	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	21	30	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	67	76	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	67	76	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	67	76	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	67	76	+	12.0182	4.71e-05	1	ATCATAAAAC
HOXC10	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	67	76	+	12.0182	4.71e-05	1	ATCATAAAAC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	+	10.8966	4.71e-05	0.0554	AGCCGCCCGGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	+	10.8966	4.71e-05	0.0554	CGCCCCACAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	-	10.8966	4.71e-05	0.0554	CGCCGGAAGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	-	10.8966	4.71e-05	0.0554	CGCCGGAAGGGCA
ELF5	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	29	39	+	11.7818	4.71e-05	0.135	TGCCGGAAGTC
ELF5	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	36	46	-	11.7818	4.71e-05	0.135	AGACGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	69	79	+	11.7818	4.71e-05	0.135	AGACGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	69	79	+	11.7818	4.71e-05	0.135	AGACGGAAGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	31	45	+	7.53448	4.71e-05	0.0381	CCCCGCCCGCTCAGT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	31	45	+	7.53448	4.71e-05	0.0381	CCCCGCCCGCTCAGT
EGR3	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	75	89	-	7.53448	4.71e-05	0.0381	CGACGCCGCCGCCTC
EGR3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	100	114	-	7.53448	4.71e-05	0.0381	CGCCGCCGCCGCCAT
ESR2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	52	66	+	11.3654	4.71e-05	0.426	GGGTCAGCACCTCCC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	48	61	+	11.5909	4.71e-05	0.0533	GGGGGAGAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	48	61	+	11.5909	4.71e-05	0.0533	GGGGGAGAGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	48	61	+	11.5909	4.71e-05	0.0533	GGGGGAGAGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	48	61	+	11.5909	4.71e-05	0.0533	GGGGGAGAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	48	61	+	11.5909	4.71e-05	0.0533	GGGGGAGAGGCCTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	54	67	-	11.5909	4.71e-05	0.0533	GGGCCCAGGGCCTT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	26	37	-	11.8	4.71e-05	0.055	CGCCCCAAGCCC
E2F1	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	3	14	-	11.623	4.71e-05	0.41	TTCGGCGCGAAA
E2F1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	43	54	+	11.623	4.71e-05	0.41	ACTGGCGCCCTA
E2F1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	61	72	-	11.623	4.71e-05	0.41	ACTGGCGCCCTA
E2F1	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	101	112	+	11.623	4.71e-05	0.41	TTCGGCGCGAAA
BATF3	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	88	101	+	2.36364	4.71e-05	0.178	AGATGACGGGACCA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	60	73	+	3.12766	4.71e-05	0.48	AAAGTCAAAGTTTG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	60	73	+	3.12766	4.71e-05	0.48	AAAGTCAAAGTTTG
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	36	49	-	3.12766	4.71e-05	0.48	AAAGTCAAAGTTTG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	36	49	-	3.12766	4.71e-05	0.48	AAAGTCAAAGTTTG
E2F4	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	10	20	-	11.7586	4.71e-05	0.0461	CGGCGGGAGTA
E2F4	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	95	105	+	11.7586	4.71e-05	0.0461	CGGCGGGAGTA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	98	108	+	11.6909	4.71e-05	0.189	TCTGAGTCAGG
HOXB2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	+	9.96226	4.71e-05	1	CGTCATTAGC
HOXB2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	+	9.96226	4.71e-05	1	CGTCATTAGC
HOXB2	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	-	9.96226	4.71e-05	1	CGTCATTAGC
HOXB2	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	+	9.96226	4.71e-05	1	CGTCATTAGC
HOXB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	77	86	-	9.96226	4.71e-05	1	AGTAATTAGA
HOXB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	77	86	-	9.96226	4.71e-05	1	AGTAATTAGA
HOXB2	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	-	9.96226	4.71e-05	1	CGTCATTAGC
MAFK	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	59	73	+	11.8	4.71e-05	0.991	AGGTATCAGCACTTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	37	53	-	5.12727	4.71e-05	0.0254	TAGACTCCGCCTCCCGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	48	64	-	5.12727	4.71e-05	0.0254	CCAGCCCCGCGCCTCTG
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	97	111	+	11.3874	4.71e-05	0.177	TCGGGGGAGGGGGGA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	4	18	-	11.3874	4.71e-05	0.177	TCGGGGGAGGGGGGA
CREB3L1	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	67	80	-	9.48485	4.71e-05	0.287	TGGCCACGTCGTAG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	4	16	+	9.31818	4.71e-05	0.258	TAGGGATTTCCCC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	4	16	+	9.31818	4.71e-05	0.258	TAGGGATTTCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	4	16	-	9.31818	4.71e-05	0.258	TAGGGATTTCCCC
MAFF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	21	+	11.5333	4.71e-05	0.965	TATGAGTCAGCATGAGTC
MAFF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	21	+	11.5333	4.71e-05	0.965	TATGAGTCAGCATGAGTC
NFYB	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	55	69	+	11.4615	4.71e-05	0.149	GGCCGGACCAATGGA
NFYB	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	46	60	-	11.4615	4.71e-05	0.149	GGCCGGACCAATGGA
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	77	90	+	7.28049	4.71e-05	0.5	TTTGAACCCGGCGG
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	77	90	+	7.28049	4.71e-05	0.5	TTTGAACCCGGCGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	18	32	-	9.27869	4.72e-05	0.0578	TGCCCCACCCAGTTA
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	64	78	+	9.27869	4.72e-05	0.0578	TGCCCCACCCAGTTA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	64	78	+	9.27869	4.72e-05	0.0578	TGCCCCACCCAGTTA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	73	89	-	10.5612	4.72e-05	0.338	GGGGCAAGGGAAGTGGA
EHF	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	60	71	+	11.0164	4.72e-05	0.123	AACCCGGAAACC
EHF	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	86	97	+	11.0164	4.72e-05	0.123	ACGGCGGAAGTA
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	29	-	11.0164	4.72e-05	0.123	ACGGCGGAAGTA
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	29	-	11.0164	4.72e-05	0.123	ACGGCGGAAGTA
USF1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	98	108	-	11.6735	4.72e-05	0.17	CTCACCTGACC
USF1	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	101	111	-	11.6735	4.72e-05	0.17	ACCATGTGTCC
USF1	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	4	14	+	11.6735	4.72e-05	0.17	ACCATGTGTCC
HOXD13	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	88	97	-	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	11	20	+	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	49	58	+	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	50	59	+	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	50	59	+	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	50	59	+	12.0159	4.72e-05	1	CCTATAAAAA
HOXD13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	50	59	+	12.0159	4.72e-05	1	CCTATAAAAA
MIXL1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	10.1875	4.72e-05	1	TCTAATTAGG
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	41	50	-	11.6897	4.72e-05	0.126	AGCATCTGCG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	-	11.0164	4.72e-05	0.0641	CGCCCCCGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	-	11.0164	4.72e-05	0.0641	CGCCCTCGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	-	11.0164	4.72e-05	0.0641	CGCCCTCGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	64	+	11.0164	4.72e-05	0.0641	TGCCGGGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	64	+	11.0164	4.72e-05	0.0641	TGCCGGGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	+	11.0164	4.72e-05	0.0641	CGCCCCCGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	+	11.0164	4.72e-05	0.0641	CGCCCCCGCGGCC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	18	36	-	11.1774	4.72e-05	0.147	CGGGCCTGCGGGGCGCGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	18	36	-	11.1774	4.72e-05	0.147	CGGGCCTGCGGGGCGCGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	18	36	-	11.1774	4.72e-05	0.147	CGGGCCTGCGGGGCGCGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	18	36	-	11.1774	4.72e-05	0.147	CGGGCCTGCGGGGCGCGGC
Spz1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	62	72	-	11.7182	4.72e-05	0.766	AGGGTAAAAGA
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	+	6.4898	4.72e-05	1	CGGAACGTTTCGTCCTC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	18	27	-	10.2028	4.72e-05	0.0885	CGCACGCGAG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	18	27	-	10.2028	4.72e-05	0.0885	CGCACGCGAG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	18	27	-	10.2028	4.72e-05	0.0885	CGCACGCGAG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	18	27	-	10.2028	4.72e-05	0.0885	CGCACGCGAG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	41	51	+	11.7818	4.72e-05	0.0694	CCCCTCCGGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	64	74	+	11.7818	4.72e-05	0.0694	CCCCTCCGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	51	-	11.7818	4.72e-05	0.0694	CCCCTCCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	74	-	11.7818	4.72e-05	0.0694	CCCCTCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	13	23	+	11.9455	4.72e-05	0.0517	TGCCCGGGGCG
HOXB3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	10.16	4.72e-05	1	AGTAATTAAG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	50	64	+	9.05714	4.72e-05	0.106	GCAACCCCGCGGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	50	64	+	9.05714	4.72e-05	0.106	GCAACCCCGCGGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	50	64	+	9.05714	4.72e-05	0.106	GCAACCCCGCGGCGG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	11	26	+	10.9273	4.72e-05	0.038	CCTCACCCACCCACAT
EGR4	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	29	44	-	10.9273	4.72e-05	0.038	GCCCGCCCGCCCCCGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	50	65	+	10.9273	4.72e-05	0.038	GCACACCCACGTACGT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	64	79	-	10.9273	4.72e-05	0.038	GCACACCCACGTACGT
E2F6	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	4	14	-	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
E2F6	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	12	22	-	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	33	43	+	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	33	43	+	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	41	51	+	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
E2F6	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	101	111	+	12.0517	4.72e-05	0.0576	TGGAGGGAGCG
ELK3	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	11.7586	4.72e-05	0.112	ACAGGAAGTG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	32	43	+	11.4242	4.72e-05	0.109	CAGCGTCCGGCT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	12.6154	4.72e-05	0.298	GCCACGTGAT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	12.6154	4.72e-05	0.298	GCCACGTGAT
MAX	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	12.6154	4.72e-05	0.298	GCCACGTGAT
MAX	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	12.6154	4.72e-05	0.298	ACCACGTGAG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	+	6.7551	4.72e-05	0.275	GCTGACTCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	-	6.7551	4.72e-05	0.275	GCTGACTCATG
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	46	59	-	11.4516	4.72e-05	0.411	TTCCCTGGAGGGTC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	46	59	-	11.4516	4.72e-05	0.411	TTCCCTGGAGGGTC
SP2	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	2	16	+	11.1724	4.72e-05	0.0117	CGCCCACCTCCTGGT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	30	44	+	11.1724	4.72e-05	0.0117	GCTCCTCCCCGAGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	30	44	+	11.1724	4.72e-05	0.0117	GCTCCTCCCCGAGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	77	91	+	11.1724	4.72e-05	0.0117	CCCCTTCCCCTCCCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	19	33	-	11.1724	4.72e-05	0.0117	CCCCTTCCCCTCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	19	33	-	11.1724	4.72e-05	0.0117	GCCCTGCCCCGGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	19	33	-	11.1724	4.72e-05	0.0117	GCCCTGCCCCGGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	19	33	-	11.1724	4.72e-05	0.0117	GCCCTGCCCCGGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	19	33	-	11.1724	4.72e-05	0.0117	GCCCTGCCCCGGCTC
SP2	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	99	113	-	11.1724	4.72e-05	0.0117	CGCCCACCTCCTGGT
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	43	56	-	-0.654545	4.72e-05	0.732	TAGATAATGAAACC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	43	56	-	-0.654545	4.72e-05	0.732	TAGATAATGAAACC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	11	28	+	-11.8553	4.72e-05	0.0428	AGGAGGAAGGAACGGAGC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	63	82	-	4.88073	4.72e-05	0.0559	TCCCCCACCAACTCACCTCC
CTCF	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	12	30	+	9.52459	4.72e-05	0.118	TGGCCAGCAGCCGGCAGGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	59	77	-	9.52459	4.72e-05	0.118	TGGGCAGAGGATGGAGCCG
CTCF	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	85	103	-	9.52459	4.72e-05	0.118	TGGCCAGCAGCCGGCAGGC
CTCF	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	96	114	-	9.52459	4.72e-05	0.118	TCACCACTGGATGATGGTA
TBX5	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	22	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	44	51	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	44	51	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	63	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	63	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	63	-	11.5345	4.72e-05	0.762	AGGTGTCA
TBX4	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	22	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	44	51	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	44	51	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	63	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	63	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	63	-	11.9592	4.72e-05	0.811	AGGTGTCA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	2	9	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	2	9	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	8	15	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	8	15	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	28	35	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	28	35	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	38	45	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX5	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	93	100	+	11.5345	4.72e-05	0.762	AGGTGTCA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	2	9	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	2	9	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	8	15	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	8	15	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	28	35	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	28	35	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	38	45	+	11.9592	4.72e-05	0.811	AGGTGTCA
TBX4	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	93	100	+	11.9592	4.72e-05	0.811	AGGTGTCA
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	-	11.9808	4.72e-05	0.805	ATTACGTAAC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	52	66	+	10.2	4.72e-05	0.119	AGAGGGGGGAGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	52	66	+	10.2	4.72e-05	0.119	AGAGGGGGGAGGGGG
YY2	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	70	80	-	11.8636	4.72e-05	0.299	TGCCGCCATCT
Crx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	68	78	-	12.0345	4.73e-05	1	AAGAAGATTAT
Crx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	68	78	-	12.0345	4.73e-05	1	AAGAAGATTAT
ZIC1	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	18	31	-	7.42553	4.73e-05	0.0994	TCCCCCCCGCGCCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	65	78	-	7.42553	4.73e-05	0.0994	GGCCGCCTGTAGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	65	78	-	7.42553	4.73e-05	0.0994	GGCCGCCTGTAGAG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	40	51	+	11.7143	4.73e-05	0.0857	CCGCCCAGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	40	51	+	11.7143	4.73e-05	0.0857	CCGCCCAGGGCA
NFAT5	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	74	83	-	11.4839	4.73e-05	1	ATTTTCCAAG
NFAT5	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	7	16	+	11.4839	4.73e-05	1	ATTTTCCAAG
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	32	41	+	11.4839	4.73e-05	1	ATTTTCCAAG
NFAT5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	32	41	+	11.4839	4.73e-05	1	ATTTTCCAAG
XBP1	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	29	42	+	10.5962	4.73e-05	0.508	AGGCCTACGTCACC
XBP1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	26	39	-	10.5962	4.73e-05	0.508	GGATCCACGTCACA
XBP1	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	86	99	-	10.5962	4.73e-05	0.508	AGGCCTACGTCACC
KLF16	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	6	16	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	13	23	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	13	23	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	13	23	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	13	23	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	37	+	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	40	+	11.2069	4.73e-05	0.0179	TCCCCTCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	49	59	+	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	65	+	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	92	+	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	98	+	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	18	28	-	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	18	28	-	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	18	28	-	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	22	32	-	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	37	47	-	11.2069	4.73e-05	0.0179	CCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	70	80	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	99	109	-	11.2069	4.73e-05	0.0179	GGCACACCCAC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	25	43	+	11.2419	4.73e-05	0.671	TGATCTCTGGTTCCCCTCC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	3	14	+	11.4342	4.73e-05	0.0299	GCCAATCCCCCC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	100	111	+	11.3846	4.73e-05	0.238	AAAAATGGTGGA
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.0.0	100	111	+	11.3846	4.73e-05	0.238	AAAAATGGTGGA
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	100	111	+	11.3846	4.73e-05	0.238	AAAAATGGTGGA
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.0	100	111	+	11.3846	4.73e-05	0.238	AAAAATGGTGGA
RORA(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	32	45	+	7.39326	4.73e-05	1	CTAAACTAGGTGAG
EOMES	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	74	86	-	11.7073	4.73e-05	1	AGGGTGTGATCGC
DBP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	-	12.0943	4.73e-05	1	AATTACGCAACG
ELF3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	15	27	-	9.27586	4.73e-05	0.147	AAACCGGAAGCTG
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	23	35	-	9.27586	4.73e-05	0.147	GACCCGGAAACGG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	80	92	+	9.27586	4.73e-05	0.147	GACCCGGAAACGG
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	80	92	+	9.27586	4.73e-05	0.147	GACCCGGAAACGG
POU2F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	1	13	-	11.5	4.73e-05	1	TTTATTTTCATAC
POU2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	1	13	-	11.5	4.73e-05	1	TTTATTTTCATAC
POU2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	1	13	-	11.5	4.73e-05	1	TTTATTTTCATAC
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	1	13	-	11.5	4.73e-05	1	TTTATTTTCATAC
EGR3	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	21	35	+	7.51724	4.73e-05	0.0381	CCACGCCCACGGCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	16	30	-	7.51724	4.73e-05	0.0381	AGCCGCCCCCTCTCG
JUNB	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	35	45	+	11.898	4.73e-05	0.198	TTGTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	85	95	+	11.898	4.73e-05	0.198	CGCTGACTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	85	95	+	11.898	4.73e-05	0.198	CGCTGACTCAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	20	30	-	11.898	4.73e-05	0.198	CGCTGACTCAG
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	20	29	-	11.4182	4.73e-05	1	GAAGTGTGAT
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	20	29	-	11.4182	4.73e-05	1	GAAGTGTGAT
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	46	55	-	11.4182	4.73e-05	1	GAAGTGTGAT
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	46	55	-	11.4182	4.73e-05	1	GAAGTGTGAT
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	25	38	-	6.65306	4.74e-05	0.365	GGGCTGTGAGCCAA
GATA2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	24	37	-	12.2	4.74e-05	1	CCTCTCTTATCTCC
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.0.0	98	111	+	12.2	4.74e-05	1	TCCTGCTTATCACA
GATA2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.1	98	111	+	12.2	4.74e-05	1	TCCTGCTTATCACA
GATA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.0	98	111	+	12.2	4.74e-05	1	TCCTGCTTATCACA
GATA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.1.0	98	111	+	12.2	4.74e-05	1	TCCTGCTTATCACA
FOXC2	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	35	46	-	11.8119	4.74e-05	1	AAAGCAAACAAG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	33	52	+	4.87156	4.74e-05	0.0559	CCCGCACCCGCCCCCCTCAG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	33	52	+	4.87156	4.74e-05	0.0559	CCCGCACCCGCCCCCCTCAG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	33	52	+	4.87156	4.74e-05	0.0559	CCCGCACCCGCCCCCCTCAG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	33	52	+	4.87156	4.74e-05	0.0559	CCCGCACCCGCCCCCCTCAG
RREB1	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	67	86	+	4.87156	4.74e-05	0.0559	CCCACCCCCAAACAATCTCG
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	47	56	+	11.5306	4.74e-05	0.02	AGGGTGCGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	47	56	+	11.5306	4.74e-05	0.02	AGGGTGCGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	46	55	-	11.5306	4.74e-05	0.02	AGGGTGCGGC
SP4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	10	26	-	5.10909	4.74e-05	0.0254	GAGGCCCCTCCCGCGTC
SP4	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	31	47	+	5.10909	4.74e-05	0.0254	TCCTCCCCGCCCCCAGT
SP4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	38	54	+	5.10909	4.74e-05	0.0254	GAGGCCCCTCCCGCGTC
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	55	71	-	5.10909	4.74e-05	0.0254	CTCTCTCCGCCCCCTCG
SP4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	61	77	-	5.10909	4.74e-05	0.0254	GAGGCCCCTCCCGCGTC
SP4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	89	105	+	5.10909	4.74e-05	0.0254	GAGGCCCCTCCCGCGTC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	54	65	+	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	48	59	-	9.98387	4.74e-05	0.928	ACTATTTATAGC
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	89	100	+	11	4.74e-05	0.123	GAACCGGAAGCG
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	89	100	+	11	4.74e-05	0.123	GAACCGGAAGCG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	89	100	+	11	4.74e-05	0.123	GAACCGGAAGCG
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	89	100	+	11	4.74e-05	0.123	GAACCGGAAGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	-	11.1803	4.74e-05	0.0586	TCCCGCCAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	-	11.1803	4.74e-05	0.0586	TCCCGCCAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	+	11.1803	4.74e-05	0.0586	AGCCCTCTGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	+	11.1803	4.74e-05	0.0586	AGCCCTCTGGGGC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	41	53	-	3.55102	4.74e-05	0.242	GAGGGGTTCCCCC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	4	14	-	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	10	20	-	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	64	74	-	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	97	107	-	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	8	18	+	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	17	27	+	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	66	76	+	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	66	76	+	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	102	112	+	11.7414	4.74e-05	0.0461	GGGCGGGGGGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	+	10.8793	4.74e-05	0.0554	CCCCTCGAGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	-	10.8793	4.74e-05	0.0554	ACCCCCCCGGGGC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	10.3455	4.74e-05	0.235	AGCACGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	10.3455	4.74e-05	0.235	AGCACGTGAC
GCM1	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	84	94	-	11.4898	4.74e-05	0.531	TATGCGGGCCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	22	33	+	10.0545	4.74e-05	0.107	AGACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	22	33	+	10.0545	4.74e-05	0.107	AGACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	22	33	+	10.0545	4.74e-05	0.107	AGACCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	22	33	+	10.0545	4.74e-05	0.107	AGACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	22	33	+	10.0545	4.74e-05	0.107	AGACCGGAAGCA
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	32	43	-	11.66	4.74e-05	1	TTTATGCAAAAC
NRF1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	29	39	+	10.9273	4.74e-05	0.0174	ACCCGTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	65	75	+	10.9273	4.74e-05	0.0174	GCGCGGGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	97	107	+	10.9273	4.74e-05	0.0174	ACCCGTGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	8	18	-	10.9273	4.74e-05	0.0174	ACCCGTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	40	50	-	10.9273	4.74e-05	0.0174	GCGCGGGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	76	86	-	10.9273	4.74e-05	0.0174	ACCCGTGCGCA
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	+	3.93878	4.74e-05	1	TGGCAGCTTTCA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	72	85	-	11.5758	4.74e-05	0.0535	GCGGGCGCAGCCTC
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.931	4.74e-05	0.103	AGCGGAAGCG
ETS1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.931	4.74e-05	0.103	AGCGGAAGCG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	55	69	-	11.0727	4.74e-05	0.312	TGAAAGTGATAGTAG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	59	73	+	9.2623	4.74e-05	0.058	CACCCCGCCCCCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	27	40	+	11.0192	4.75e-05	0.0204	CGCCCGCTTCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	27	40	+	11.0192	4.75e-05	0.0204	CGCCCGCTTCCGCA
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	46	59	+	11.0192	4.75e-05	0.0204	CGGCCACTCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	56	69	-	11.0192	4.75e-05	0.0204	CGGCCACTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	56	69	-	11.0192	4.75e-05	0.0204	CGGCCACTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	56	69	-	11.0192	4.75e-05	0.0204	CGGCCACTCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	56	69	-	11.0192	4.75e-05	0.0204	CGGCCACTCCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	89	102	-	11.0192	4.75e-05	0.0204	GCTCCGCCGCCATC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	91	104	-	11.0192	4.75e-05	0.0204	GCTCCGCCGCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	91	104	-	11.0192	4.75e-05	0.0204	GCTCCGCCGCCATC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	91	104	-	11.0192	4.75e-05	0.0204	GCTCCGCCGCCATC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	4	14	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	4	14	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	21	31	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	21	31	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	54	64	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	54	64	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	60	70	+	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	67	77	+	11.6212	4.75e-05	0.0469	TACCCCACCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	4	14	-	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	38	48	-	11.6212	4.75e-05	0.0469	TACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	38	48	-	11.6212	4.75e-05	0.0469	TACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	38	48	-	11.6212	4.75e-05	0.0469	TACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	38	48	-	11.6212	4.75e-05	0.0469	TACCCCACCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	45	55	-	11.6212	4.75e-05	0.0469	CGCCCCTCCCA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	48	57	+	11.7869	4.75e-05	0.224	CCTCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	48	57	+	11.7869	4.75e-05	0.224	CCTCACGTGG
BATF3	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	49	62	+	2.33333	4.75e-05	0.179	CTATGACTTCATCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	24	35	-	11.4211	4.75e-05	0.03	CCAACGCCCAGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	24	35	-	11.4211	4.75e-05	0.03	CCAACGCCCAGT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	24	35	-	11.4211	4.75e-05	0.03	CCAACGCCCAGT
TFAP2C	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	11	22	+	11.7041	4.75e-05	0.0857	TCCCCCGAGGCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	104	-	11.7041	4.75e-05	0.0857	TCCCCCGAGGCC
BHLHE22	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	11.6061	4.75e-05	1	ACCATATGTA
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	99	114	+	-0.673469	4.75e-05	0.877	AGGGGCGAAAGGACAT
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	99	114	+	-0.673469	4.75e-05	0.877	AGGGGCGAAAGGACAT
INSM1	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	26	37	+	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	78	89	-	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	78	89	-	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	78	89	-	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	78	89	-	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	78	89	-	10.8776	4.75e-05	0.17	AGGCAGGGGCCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	59	70	+	10.0328	4.75e-05	0.1	TTACAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	59	70	+	10.0328	4.75e-05	0.1	TTACAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	81	92	-	10.0328	4.75e-05	0.1	ACTCAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	81	92	-	10.0328	4.75e-05	0.1	ACTCAGGAAGTG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	102	112	-	10.2586	4.75e-05	0.0818	CCGCCCCCGTG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	102	112	-	10.2586	4.75e-05	0.0818	CCGCCCCCGTG
KLF5	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	39	48	-	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	72	81	-	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	97	106	-	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	29	38	+	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	34	43	+	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	53	62	+	11.8571	4.75e-05	0.0189	ACCACGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	67	76	+	11.8571	4.75e-05	0.0189	ACCACGCCCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	6	17	-	11.7636	4.75e-05	0.0893	TGCCCCAGGGGC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	6	17	-	11.7636	4.75e-05	0.0893	TGCCCCAGGGGC
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	80	93	+	11.9655	4.75e-05	0.267	ATTCCAGGAAGTTT
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	80	93	+	11.9655	4.75e-05	0.267	ATTCCAGGAAGTTT
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	100	113	+	11.9655	4.75e-05	0.267	ATTCCAGGAAGTTT
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	100	113	+	11.9655	4.75e-05	0.267	ATTCCAGGAAGTTT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	7	17	-	11.9273	4.75e-05	0.058	TGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	30	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	30	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	30	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	30	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	36	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	44	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	46	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	46	-	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	69	79	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	71	81	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	79	89	+	11.9273	4.75e-05	0.058	TGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	79	89	+	11.9273	4.75e-05	0.058	TGACTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	79	89	+	11.9273	4.75e-05	0.058	CAACTTCCTGT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	22	32	+	11.5447	4.75e-05	0.0192	CCCCCGCCTCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	22	32	+	11.5447	4.75e-05	0.0192	CCCCCGCCTCT
SP3	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	33	43	+	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	51	61	+	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	62	72	+	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	84	94	+	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	84	94	+	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	4	14	-	11.5447	4.75e-05	0.0192	CCCCCGCCTCT
SP3	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	12	22	-	11.5447	4.75e-05	0.0192	CCCCCGCCTCT
SP3	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	21	31	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	21	31	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	23	33	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	25	35	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	34	44	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	54	64	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	57	67	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	57	67	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	57	67	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	57	67	-	11.5447	4.75e-05	0.0192	TCCCCGCCTCC
ZNF263	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	10	30	-	10.3265	4.75e-05	0.0162	GGAAGAGGACGAAAAAAATAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	43	63	-	10.3265	4.75e-05	0.0162	GGGTGGGGGGGAAGAGGATGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	43	63	-	10.3265	4.75e-05	0.0162	GGGTGGGGGGGAAGAGGATGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	43	63	-	10.3265	4.75e-05	0.0162	GGGTGGGGGGGAAGAGGATGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	48	68	-	10.3265	4.75e-05	0.0162	AGGGAAAGGGGCGGGGGGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	59	79	-	10.3265	4.75e-05	0.0162	AATGGCGGAGAGGGCAGGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	64	84	-	10.3265	4.75e-05	0.0162	GAGACAGAGGAGAGAGGAGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	9	29	+	10.3265	4.75e-05	0.0162	GGGGCAGAGGGAAGTGAGATG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	11	31	+	10.3265	4.75e-05	0.0162	GGGACAGAGGGAAAGGGAGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	32	52	+	10.3265	4.75e-05	0.0162	GGGGAAGTGGAGAGTGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	38	58	+	10.3265	4.75e-05	0.0162	GGAGGATGCGAGGTTGAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	38	58	+	10.3265	4.75e-05	0.0162	GGAGGATGCGAGGTTGAAAAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	47	67	+	10.3265	4.75e-05	0.0162	AGGGAAAGGGGCGGGGGGAGC
ZNF263	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	85	105	+	10.3265	4.75e-05	0.0162	GGAAGAGGACGAAAAAAATAA
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	24	39	-	-7.40385	4.75e-05	0.329	CTTCCCCCAGCGGCGC
GLIS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	24	39	-	-7.40385	4.75e-05	0.329	CTTCCCCCAGCGGCGC
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	41	54	-	9.48485	4.76e-05	0.339	AGGGGCATAGGTTG
Nr2f6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	41	54	-	9.48485	4.76e-05	0.339	AGGGGCATAGGTTG
Nr2f6	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	61	74	+	9.48485	4.76e-05	0.339	AGGGGCATAGGTTG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	20	34	+	10.1857	4.76e-05	0.119	CGGGGGGAGAGGGGT
NR2C2	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	72	86	-	10.1857	4.76e-05	0.119	GAGGAGCGGAGGGCA
E2F7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	81	94	-	-3.01639	4.76e-05	1	CATCCCCGCCAATC
E2F7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	81	94	-	-3.01639	4.76e-05	1	CATCCCCGCCAATC
Crx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	79	89	-	12.0172	4.76e-05	1	CAGGAGATTAA
Crx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	79	89	-	12.0172	4.76e-05	1	CAGGAGATTAA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	3	16	-	9.7069	4.76e-05	0.0314	GCCCACGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	3	16	-	9.7069	4.76e-05	0.0314	GCCCACGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	39	52	+	9.7069	4.76e-05	0.0314	GCCCACGCCCCGCC
KLF14	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	52	65	+	9.7069	4.76e-05	0.0314	CACCCCACCCCCCT
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	3	15	-	11	4.76e-05	0.0641	GGCCCACGGGGCT
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	19	31	-	11	4.76e-05	0.0641	TCCCCGCCGGGGT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	84	96	+	11	4.76e-05	0.0641	TCCCCGCCGGGGT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	84	96	+	11	4.76e-05	0.0641	TCCCCGCCGGGGT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	84	96	+	11	4.76e-05	0.0641	TCCCCGCCGGGGT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	100	112	+	11	4.76e-05	0.0641	GGCCCACGGGGCT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	109	-	11	4.76e-05	0.0641	ACCCCCGGCGGCG
Foxj3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	69	85	+	11.8052	4.76e-05	1	CGGAAGTAAACATTACG
Foxj3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	69	85	+	11.8052	4.76e-05	1	CGGAAGTAAACATTACG
GLI2	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	40	51	+	11.069	4.76e-05	0.33	GCGGCCACACAC
GLI2	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	56	67	-	11.069	4.76e-05	0.33	GAGCCCACGCTA
Stat6	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	97	111	+	11.7241	4.76e-05	0.692	ACCTTCTTGTGAAAA
Stat6	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	4	18	-	11.7241	4.76e-05	0.692	ACCTTCTTGTGAAAA
SP2	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	11	25	+	11.1552	4.76e-05	0.0118	CTCCCACCCCGCTGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	45	59	+	11.1552	4.76e-05	0.0118	TCTCCACCCCCTTGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	45	59	+	11.1552	4.76e-05	0.0118	TCTCCACCCCCTTGG
SP2	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	72	86	+	11.1552	4.76e-05	0.0118	CTCCCACCCCGCTGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	20	34	-	11.1552	4.76e-05	0.0118	TCTCCACCCCCTTGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	20	34	-	11.1552	4.76e-05	0.0118	TCTCCACCCCCTTGG
SP2	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	29	43	-	11.1552	4.76e-05	0.0118	CTCCCACCCCGCTGC
SP2	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	90	104	-	11.1552	4.76e-05	0.0118	CTCCCACCCCGCTGC
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	53	64	-	11.4091	4.76e-05	0.109	GCGCGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	53	64	-	11.4091	4.76e-05	0.109	GCGCGTCCCCGC
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	14	22	+	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	14	22	+	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	40	48	+	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	52	60	+	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	20	28	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	27	35	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	27	35	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	44	52	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	55	63	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	55	63	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	81	89	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	93	101	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	95	103	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	95	103	-	11.6346	4.76e-05	0.516	GTGCCAGCT
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	42	55	+	10.8276	4.76e-05	0.237	GCTTGCAGGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	42	55	+	10.8276	4.76e-05	0.237	GCTTGCAGGGCAAC
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	12	24	-	11.4426	4.76e-05	0.359	GTGCCTGGCACCG
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	52	64	+	11.4426	4.76e-05	0.359	GTGTCTCTCACTG
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	91	103	+	11.4426	4.76e-05	0.359	GTGCCTGGCACCG
SP4	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	26	42	+	5.09091	4.76e-05	0.0254	GCAGCCCCGCCCTGTGT
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	37	53	-	5.09091	4.76e-05	0.0254	GAGGCTCCACCCCTATC
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	91	107	+	5.09091	4.76e-05	0.0254	GAGGCTCCACCCCTATC
PAX5	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	24	-	11.1613	4.76e-05	0.147	GCGCCCGCCGAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	26	44	+	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	26	44	+	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	26	44	+	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	26	44	+	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	26	44	+	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	61	79	+	11.1613	4.76e-05	0.147	CTGCGCTGTGAGCCGGGGC
PAX5	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	76	94	+	11.1613	4.76e-05	0.147	GGGGGCAGTTGGGCGGGGA
PAX5	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	84	102	+	11.1613	4.76e-05	0.147	CTGCGCTGTGAGCCGGGGC
PAX5	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	71	89	-	11.1613	4.76e-05	0.147	GGGAGCTACCGGGCGAGAA
PAX5	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	91	109	+	11.1613	4.76e-05	0.147	GCGCCCGCCGAGGCGGGGC
FOXP1	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	47	61	+	11.6901	4.76e-05	0.341	TATTTATAAACACAG
ETV2	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	29	-	11.3115	4.76e-05	0.152	TACAGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	60	70	+	11.3115	4.76e-05	0.152	TACAGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	60	70	+	11.3115	4.76e-05	0.152	TACAGGAAGTG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	7	20	-	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	7	20	-	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	45	58	-	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	22	35	+	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	57	70	+	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	57	70	+	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
CREB3	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	95	108	+	10.5286	4.76e-05	0.251	CTGGCACGTCACTT
IRF7	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	46	59	-	9.56452	4.76e-05	0.697	CGTAAAATGAAACC
TCF3	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	12	21	-	12.75	4.76e-05	0.404	CGCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	49	58	+	12.75	4.76e-05	0.404	CGCACCTGGC
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	49	58	+	12.75	4.76e-05	0.404	CGCACCTGGC
TCF3	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	57	66	-	12.75	4.76e-05	0.404	CGCACCTGGC
TCF3	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	94	103	+	12.75	4.76e-05	0.404	CGCACCTGGC
CDX2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	79	89	+	12.3051	4.76e-05	1	CAGCCATAAAT
RREB1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	23	42	-	4.85321	4.76e-05	0.0561	CGACCCCACCCCCCCCGCCC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	73	92	+	4.85321	4.76e-05	0.0561	CGACCCCACCCCCCCCGCCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	39	50	+	10.0364	4.76e-05	0.107	GACCCGGATGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	39	50	+	10.0364	4.76e-05	0.107	GACCCGGATGCG
ELF1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	65	76	-	10.0364	4.76e-05	0.107	GACCCGGATGCG
HES5	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	-	4.15517	4.77e-05	0.296	TGACATGTGTCC
HES5	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	+	4.15517	4.77e-05	0.296	TGACATGTGTCC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	12.0606	4.77e-05	0.585	AGCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	12.0606	4.77e-05	0.585	AGCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	12.0606	4.77e-05	0.585	AGCACGTGGC
CLOCK	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	12.0606	4.77e-05	0.585	AGCACGTGGC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	26	36	-	11.1897	4.77e-05	0.018	CACCCGCCTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	44	59	+	10.9091	4.77e-05	0.0381	ACACGCACACGCCCGC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	44	59	+	10.9091	4.77e-05	0.0381	ACACGCACACGCCCGC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	44	59	+	10.9091	4.77e-05	0.0381	ACACGCACACGCCCGC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	44	59	+	10.9091	4.77e-05	0.0381	ACACGCACACGCCCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	56	71	+	10.9091	4.77e-05	0.0381	CTCCGCCCCCGGCTCC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	10	30	+	9.82258	4.77e-05	0.174	ACACGGTTTCAGTTCCTAGTG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	19	39	+	9.82258	4.77e-05	0.174	CGGAAGTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	24	44	-	9.82258	4.77e-05	0.174	TCTTGCTTTTCTTTTTTTCTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	24	44	-	9.82258	4.77e-05	0.174	TCTTGCTTTTCTTTTTTTCTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	62	82	+	9.82258	4.77e-05	0.174	TCTTGCTTTTCTTTTTTTCTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	62	82	+	9.82258	4.77e-05	0.174	TCTTGCTTTTCTTTTTTTCTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	82	102	-	9.82258	4.77e-05	0.174	ACACGGTTTCAGTTCCTAGTG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	26	39	+	6.69388	4.77e-05	0.0719	GGGGTCCTGAGGGA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	16	29	-	6.69388	4.77e-05	0.0719	GAGGCCAAGAGGGC
PLAG1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	76	89	-	6.69388	4.77e-05	0.0719	GGGGTCCTGAGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	14	28	-	11.0182	4.77e-05	0.109	TCCTCCCTGCAGCGT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	14	28	-	11.0182	4.77e-05	0.109	TCCTCCCTGCAGCGT
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	98	112	-	11.0182	4.77e-05	0.109	TGCCACCCGCAGCCG
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	+	10.8621	4.77e-05	0.0554	TGCCCTTCAGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	-	10.8621	4.77e-05	0.0554	TGCCCTTCAGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	-	10.8621	4.77e-05	0.0554	TGCCCTTCAGGGG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	+	10.8621	4.77e-05	0.0554	TGCCCTTCAGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	85	+	10.8621	4.77e-05	0.0554	TGCCGGCGGGGGG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	-	10.8621	4.77e-05	0.0554	TGCCCTTCAGGGG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	9.05769	4.77e-05	0.165	ATCACGTGTC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	9.05769	4.77e-05	0.165	ATCACGTGTC
ATF7	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	84	97	-	8.45714	4.77e-05	0.156	CCGTGAGGTCATCG
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	18	31	+	8.45714	4.77e-05	0.156	CCGTGAGGTCATCG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	18	31	+	8.45714	4.77e-05	0.156	CCGTGAGGTCATCG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	11.5306	4.77e-05	0.117	CACACGTGCC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	11.5306	4.77e-05	0.117	CACACGTGCC
ZNF143	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	46	61	+	2.89655	4.77e-05	0.326	CACCCAGAGAGCACTC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	34	45	-	11.6613	4.77e-05	0.281	GCGACCCCCTGC
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	54	67	-	9.45455	4.77e-05	0.287	GTAACACGTCAGAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	54	67	-	9.45455	4.77e-05	0.287	GTAACACGTCAGAA
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	19	35	+	11.0263	4.77e-05	0.614	TCGCGTGCGTACGTCAT
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	19	35	+	11.0263	4.77e-05	0.614	TCGCGTGCGTACGTCAT
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	43	59	-	11.0263	4.77e-05	0.614	GAGCTTACGTCTGACTG
Mafb	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	16	27	-	11.7753	4.77e-05	0.865	GAGTTGCTGACA
Mafb	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	26	37	+	11.7753	4.77e-05	0.865	GAGTTGCTGACA
ZBTB33	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	45	59	-	11.0152	4.77e-05	0.103	GTCCCGCGCGCGCAC
ZBTB33	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	54	68	+	11.0152	4.77e-05	0.103	AGCCCGCGAGCTCTC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	56	70	+	11.0152	4.77e-05	0.103	GTCCCGCGCGCGCAC
Klf12	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	21	35	-	9.2459	4.77e-05	0.0581	GGCCCCTCCCACCTC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	47	61	-	9.2459	4.77e-05	0.0581	GGCCCCACCCCAGTG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	47	61	-	9.2459	4.77e-05	0.0581	GGCCCCACCCCAGTG
Klf12	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	80	94	+	9.2459	4.77e-05	0.0581	GGCCCCTCCCACCTC
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	91	104	-	3.08511	4.77e-05	0.48	AAAATCAAAGTTCA
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	91	104	-	3.08511	4.77e-05	0.48	AAAATCAAAGTTCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	28	38	-	11.5909	4.78e-05	0.0469	GAACACACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	28	38	-	11.5909	4.78e-05	0.0469	GAACACACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	28	38	-	11.5909	4.78e-05	0.0469	GAACACACCCC
Zfx	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	30	43	+	11.5606	4.78e-05	0.0536	CGCTGCAGGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	72	85	-	11.5606	4.78e-05	0.0536	CGCTGCAGGGCCTC
TFAP4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	43	52	-	11.6364	4.78e-05	0.655	CACAGCTGAG
JUND	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	77	87	+	11.4894	4.78e-05	0.2	GCTGACTCAGG
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	41	53	+	11.44	4.78e-05	1	ATTTTGTTAATTA
ID4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	12.7049	4.78e-05	0.389	AACACCTGCT
MYBL2	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	79	93	-	10.0656	4.78e-05	1	GGCCGTTAAACACTG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	80	90	+	11.6531	4.78e-05	0.261	ATTCCAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	80	90	+	11.6531	4.78e-05	0.261	ATTCCAGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	100	110	+	11.6531	4.78e-05	0.261	ATTCCAGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	100	110	+	11.6531	4.78e-05	0.261	ATTCCAGGAAG
REST	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	6	26	-	6.07143	4.78e-05	0.219	GCCGGGGCCGGGGGCAGGGGC
REST	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	89	109	+	6.07143	4.78e-05	0.219	GCCGGGGCCGGGGGCAGGGGC
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	57	-	11.4681	4.78e-05	0.32	TAATATGACGTCAGG
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	57	-	11.4681	4.78e-05	0.32	TAATATGACGTCAGG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	57	-	11.4681	4.78e-05	0.32	TAATATGACGTCAGG
FOXC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	43	54	-	11.802	4.78e-05	1	TATGTCAACAGA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	17	29	-	3.5102	4.78e-05	0.242	TGGGAAACCACCC
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	48	60	-	3.5102	4.78e-05	0.242	TGGGAAACCACCC
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	48	60	-	3.5102	4.78e-05	0.242	TGGGAAACCACCC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	16	27	+	10.0164	4.78e-05	0.1	CCAGCGGAAGTG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	3	13	-	11.9273	4.78e-05	0.0517	TCCCTGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	-	11.9273	4.78e-05	0.0517	TGCCCCAGGGG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	-	11.9273	4.78e-05	0.0517	TGCCCCAGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	32	42	+	11.9273	4.78e-05	0.0517	CGCCTCCGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	32	42	+	11.9273	4.78e-05	0.0517	CGCCTCCGGGA
TFAP2A	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	53	+	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	39	49	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	62	72	-	11.9273	4.78e-05	0.0517	TGCCCGCGGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	16	30	-	7.48276	4.78e-05	0.0381	TCCCGCCCCCTCTGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	16	30	-	7.48276	4.78e-05	0.0381	TCCCGCCCCCTCTGC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	52	66	-	7.48276	4.78e-05	0.0381	GGCCGCTCCCGCGAC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	52	66	-	7.48276	4.78e-05	0.0381	GGCCGCTCCCGCGAC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	52	66	-	7.48276	4.78e-05	0.0381	GGCCGCTCCCGCGAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	5	21	-	5.07273	4.79e-05	0.0254	CTAAGCACGCCCCCTCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	31	47	+	5.07273	4.79e-05	0.0254	TTCGCCCCACCCCATCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	31	47	+	5.07273	4.79e-05	0.0254	TTCGCCCCACCCCATCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	25	41	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	25	41	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	25	41	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	58	74	+	5.07273	4.79e-05	0.0254	CTGGCCCCGCCCTGGAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	59	75	+	5.07273	4.79e-05	0.0254	TTCGCCCCACCCCATCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	59	75	+	5.07273	4.79e-05	0.0254	TTCGCCCCACCCCATCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	58	74	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	58	74	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	58	74	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	58	74	-	5.07273	4.79e-05	0.0254	CGAGCCCCGCCTTCCCG
POU3F1	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	21	32	+	11.6024	4.79e-05	1	TTATGCAGATGT
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	36	47	-	8.99083	4.79e-05	0.848	TGAGAGGCGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	36	47	-	8.99083	4.79e-05	0.848	TGAGAGGCGTCA
TGIF2	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	68	79	+	8.99083	4.79e-05	0.848	TGAGAGGCGTCA
MYBL1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	9	20	+	10.7069	4.79e-05	1	ACCGTTAGCGCC
MYBL1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	95	106	-	10.7069	4.79e-05	1	ACCGTTAGCGCC
EHF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	28	39	+	10.9836	4.79e-05	0.124	GTGCCGGAAGTC
EHF	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	87	98	-	10.9836	4.79e-05	0.124	GACGCGGAACTA
NKX2-3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	88	97	-	12.0192	4.79e-05	1	ACCACTTGGA
NKX2-3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	88	97	-	12.0192	4.79e-05	1	ACCACTTGGA
KLF14	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	52	65	-	9.68966	4.79e-05	0.0315	CGCCACTCCCACAA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	69	82	-	9.68966	4.79e-05	0.0315	AGCCACGCCTTCCC
Hes2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	8	20	-	11.1111	4.79e-05	0.498	GCCTGGCACGTGG
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	20	32	+	11.4655	4.79e-05	1	CTGTTTTGCATTC
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	40	52	-	11.4655	4.79e-05	1	CTGTTTTGCATTC
ERG	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.9455	4.79e-05	0.113	AACGGAAGTA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.9455	4.79e-05	0.113	AACGGAAGTA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.9455	4.79e-05	0.113	AACGGAAGTA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	17	30	+	11	4.79e-05	0.0206	GCCCCGCCCCTTGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	17	30	+	11	4.79e-05	0.0206	GCCCCGCCCCTTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	17	30	+	11	4.79e-05	0.0206	GCCCCGCCCCTTGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	17	30	+	11	4.79e-05	0.0206	GCCCCGCCCCTTGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	11	24	-	11	4.79e-05	0.0206	CCCCTTCCTCCGCT
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	85	98	-	6.68367	4.79e-05	0.0719	GGGATCCAAGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	85	98	-	6.68367	4.79e-05	0.0719	GGGATCCAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	85	98	-	6.68367	4.79e-05	0.0719	GGGATCCAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	85	98	-	6.68367	4.79e-05	0.0719	GGGATCCAAGGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	27	38	+	11.7818	4.79e-05	0.055	CGCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	27	38	+	11.7818	4.79e-05	0.055	CGCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	24	35	-	11.7818	4.79e-05	0.055	CGCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	24	35	-	11.7818	4.79e-05	0.055	CGCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	-	11.7818	4.79e-05	0.055	CCCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	-	11.7818	4.79e-05	0.055	CCCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	-	11.7818	4.79e-05	0.055	CCCCTGGGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	+	11.7818	4.79e-05	0.055	CCCCTGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	59	70	+	11.7818	4.79e-05	0.055	TCCCCGAGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	59	70	+	11.7818	4.79e-05	0.055	TCCCCGAGGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	63	74	+	11.7818	4.79e-05	0.055	CGCCCGCCGGCC
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	42	55	-	11.9231	4.79e-05	0.22	GGACGCTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	42	55	-	11.9231	4.79e-05	0.22	GGACGCTGAGTCAC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	21	31	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	21	31	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	22	32	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	40	50	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	40	50	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	40	50	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	58	68	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	58	68	-	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	83	93	+	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	84	94	+	11.9091	4.79e-05	0.0517	CGCCGCGGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	+	11.1475	4.79e-05	0.0586	TGCCCGCCAGGGG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	-	11.1475	4.79e-05	0.0586	TGCCCGCCAGGGG
EBF1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	19	32	+	10	4.79e-05	0.365	CCACCCCGGGGACT
EBF1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	39	52	+	10	4.79e-05	0.365	CCACCCCGGGGACT
EBF1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	63	76	-	10	4.79e-05	0.365	CCACCCCGGGGACT
EBF1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	83	96	-	10	4.79e-05	0.365	CCACCCCGGGGACT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	+	10.9836	4.8e-05	0.0641	AGCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	+	10.9836	4.8e-05	0.0641	AGCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	+	10.9836	4.8e-05	0.0641	AGCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	+	10.9836	4.8e-05	0.0641	AGCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	85	-	10.9836	4.8e-05	0.0641	CCCCCCGCCGGCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	-	10.9836	4.8e-05	0.0641	AGCCCCAGCGGCG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	101	114	+	6.59184	4.8e-05	0.365	AGGCACGCAGCCAG
SPIC	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	48	61	+	11.4366	4.8e-05	0.238	ATAAAGAGGAAGGG
SPIC	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	54	67	-	11.4366	4.8e-05	0.238	ATAAAGAGGAAGGG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	22	32	+	11.7636	4.8e-05	0.136	AACCGGAAGGG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	22	32	+	11.7636	4.8e-05	0.136	AACCGGAAGGG
ELF5	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	48	58	+	11.7636	4.8e-05	0.136	GGCCGGAAGTA
ELF5	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	67	-	11.7636	4.8e-05	0.136	GGCCGGAAGTA
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	34	+	7.38298	4.8e-05	0.0994	TGCCCCCCGGGGCC
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	34	+	7.38298	4.8e-05	0.0994	TGCCCCCCGGGGCC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	33	46	+	7.38298	4.8e-05	0.0994	GGCCTCCTGGCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	25	38	-	7.38298	4.8e-05	0.0994	TGCCCCCCGGGGCC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	47	60	-	7.38298	4.8e-05	0.0994	GGCCTCCTGGCGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	90	+	7.38298	4.8e-05	0.0994	TGCCCCCCGGGGCC
ZIC1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	81	94	-	7.38298	4.8e-05	0.0994	TGCCCCCCGGGGCC
ATF7	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	54	67	-	8.44286	4.8e-05	0.156	GGGTGACGGCACCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	36	46	-	12	4.8e-05	0.058	TCGCGGGAACG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	36	46	-	12	4.8e-05	0.058	TCGCGGGAACG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	79	89	-	12	4.8e-05	0.058	CGGCGGGAACG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	79	89	-	12	4.8e-05	0.058	CGGCGGGAACG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	79	89	-	12	4.8e-05	0.058	CGGCGGGAACG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	79	89	-	12	4.8e-05	0.058	CGGCGGGAACG
Foxj3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	66	82	-	11.7922	4.8e-05	1	CCCAAATAAACAACTAC
Foxj3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	66	82	-	11.7922	4.8e-05	1	CCCAAATAAACAACTAC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	25	35	+	11.6731	4.8e-05	0.0135	GTTCCACCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	25	35	+	11.6731	4.8e-05	0.0135	GCTCCACCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	25	35	+	11.6731	4.8e-05	0.0135	GCTCCACCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	25	35	+	11.6731	4.8e-05	0.0135	GCTCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	25	35	+	11.6731	4.8e-05	0.0135	GCTCCACCTCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	30	40	+	11.6731	4.8e-05	0.0135	GTTCCACCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	33	43	+	11.6731	4.8e-05	0.0135	ACCCCGCCTAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	56	66	+	11.6731	4.8e-05	0.0135	TCCCCACCCTT
SP1	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	60	70	+	11.6731	4.8e-05	0.0135	ACCCCGCCTAC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	75	85	-	11.6731	4.8e-05	0.0135	GTTCCACCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	80	90	-	11.6731	4.8e-05	0.0135	GTTCCACCCCT
ETV4	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.7759	4.8e-05	0.125	ACAGGAAGTA
ETV4	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.7759	4.8e-05	0.125	ACAGGAAGTA
CEBPD	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	42	51	-	11.9615	4.8e-05	0.805	GTGACGCAAC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	48	68	+	9.80645	4.8e-05	0.174	AGAGTCTTTTGCTTTCAGATC
HEY2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	11.4138	4.8e-05	0.183	GACACGTGGT
HEY2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	11.4138	4.8e-05	0.183	GACACGTGGT
REST	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	92	112	-	6.06122	4.8e-05	0.219	GCTCGCACCCCGGCGCGCTCC
REST	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	3	23	+	6.06122	4.8e-05	0.219	GCTCGCACCCCGGCGCGCTCC
CEBPB	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	42	51	-	11.92	4.8e-05	0.821	GTGACGCAAC
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	-	11.92	4.8e-05	0.821	ATTACGCAAG
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	37	46	-	11.8367	4.8e-05	0.019	GCCTCGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	12	21	+	11.8367	4.8e-05	0.019	GCCTCGCCCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	26	40	+	11.3604	4.8e-05	0.177	GAGGGGGAAGGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	34	-	11.3604	4.8e-05	0.177	TGGGTGCAAAGGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	34	-	11.3604	4.8e-05	0.177	TGGGTGCAAAGGTGA
SP2	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	17	31	+	11.1379	4.8e-05	0.0119	AGCCCGCCTCGGGCG
SP2	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	68	82	+	11.1379	4.8e-05	0.0119	CCCGCGCCCCCCGCG
SP2	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	84	98	-	11.1379	4.8e-05	0.0119	AGCCCGCCTCGGGCG
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	30	43	+	10.8103	4.8e-05	0.237	CTCTTCCTGGAAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	56	69	+	10.8103	4.8e-05	0.237	CTCTTCCTGGAAAC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	51	61	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	51	61	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	65	75	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	84	94	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	99	109	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	99	109	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	99	109	+	11.7241	4.8e-05	0.0462	TAGCGGGAGAG
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	39	51	-	9.24138	4.8e-05	0.147	TTCCCGGAAGGGG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	39	51	-	9.24138	4.8e-05	0.147	TTCCCGGAAGGGG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	39	51	-	9.24138	4.8e-05	0.147	TTCCCGGAAGGGG
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	39	51	-	9.24138	4.8e-05	0.147	TTCCCGGAAGGGG
Alx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	2	18	-	11.7273	4.8e-05	1	GCTCTTAATTAATTGAT
Alx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	2	18	-	11.7273	4.8e-05	1	GCTCTTAATTAATTGAT
DUX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	43	53	-	11.766	4.8e-05	1	TAAACTCATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	43	53	-	11.766	4.8e-05	1	TAAACTCATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	64	74	-	11.766	4.8e-05	1	AAATTCAATCT
DUX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	64	74	-	11.766	4.8e-05	1	AAATTCAATCT
DUX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	64	74	-	11.766	4.8e-05	1	AAATTCAATCT
DUX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	64	74	-	11.766	4.8e-05	1	AAATTCAATCT
FOXP2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	49	59	-	12.3485	4.8e-05	1	GGGTAAACACC
FOXP2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	77	87	-	12.3485	4.8e-05	1	GGGTAAACACC
FOXP2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	56	66	+	12.3485	4.8e-05	1	GGGTAAACACC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	3	23	-	10.3061	4.8e-05	0.0163	GGGGGCGGGGGCCTAGGGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	28	48	-	10.3061	4.8e-05	0.0163	GAGGGAGGAACATGTTGGGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	33	53	-	10.3061	4.8e-05	0.0163	GGAGCGCGGGGGAGAGAAAGA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	68	88	-	10.3061	4.8e-05	0.0163	TGGGAAGTGAGATAAGGAAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	70	90	-	10.3061	4.8e-05	0.0163	GGGGGTCCTGAGGGAGGGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	85	105	-	10.3061	4.8e-05	0.0163	AGAGAACGGGGGCTGGGGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	9	29	+	10.3061	4.8e-05	0.0163	TGGGAAGTGAGATAAGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	10	30	+	10.3061	4.8e-05	0.0163	AGAGAACGGGGGCTGGGGGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	25	45	+	10.3061	4.8e-05	0.0163	GGGGGTCCTGAGGGAGGGAGG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	27	47	+	10.3061	4.8e-05	0.0163	TGGGAAGTGAGATAAGGAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	45	65	+	10.3061	4.8e-05	0.0163	GAGGGAGGAACATGTTGGGCA
ZNF263	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	51	71	+	10.3061	4.8e-05	0.0163	GAGGCCGGGAGGAGGGAGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	74	94	+	10.3061	4.8e-05	0.0163	AAAGGTAGAGAGGGAGAAGTG
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	28	42	-	11.3269	4.8e-05	0.426	GGGTCACCCAGCGTC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	28	42	-	11.3269	4.8e-05	0.426	GGGTCACCCAGCGTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	28	42	-	11.3269	4.8e-05	0.426	GGGTCACCCAGCGTC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	5	19	+	9.22951	4.8e-05	0.0583	AGCCAAGCCCTGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	5	19	+	9.22951	4.8e-05	0.0583	AGCCAAGCCCTGCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	13	24	-	11.4079	4.8e-05	0.0301	GTCACCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	13	24	-	11.4079	4.8e-05	0.0301	GTCACCCCCCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	53	64	+	11.4079	4.8e-05	0.0301	AACCCGCCCGCT
THAP1	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	2	10	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	4	12	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	29	37	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	29	37	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	43	51	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	53	61	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	54	62	-	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	68	76	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	73	81	-	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	73	81	-	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	89	97	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	89	97	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	89	97	+	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	101	109	-	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	105	113	-	10.3553	4.81e-05	0.215	CTGCCCAGA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	105	113	-	10.3553	4.81e-05	0.215	CTGCCCAGA
Phox2b	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	4	14	+	11.7872	4.81e-05	1	TTATTCAATTA
PAX5	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	46	64	+	11.1452	4.81e-05	0.147	AGGCGCAGCCGGGCGGGCG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	4	18	+	9.01429	4.81e-05	0.106	GCCCTCCTGCGGTAT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	4	18	+	9.01429	4.81e-05	0.106	GCCCTCCTGCGGTAT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	4	18	+	9.01429	4.81e-05	0.106	GCCCTCCTGCGGTAT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	4	18	+	9.01429	4.81e-05	0.106	GCCCTCCTGCGGTAT
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	4	18	+	9.01429	4.81e-05	0.106	GCCCTCCTGCGGTAT
ZIC3	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	22	36	+	9.01429	4.81e-05	0.106	CCAGCCCCGCTGTGA
ZIC3	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	95	109	+	9.01429	4.81e-05	0.106	CCAGCCCCGCTGTGA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	5	19	-	9.01429	4.81e-05	0.106	TCCCTCCTACTGTTC
ZIC3	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	6	20	-	9.01429	4.81e-05	0.106	CCAGCCCCGCTGTGA
ZIC3	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	79	93	-	9.01429	4.81e-05	0.106	CCAGCCCCGCTGTGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	+	11.7455	4.81e-05	0.0893	CGGCCCGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	+	11.7455	4.81e-05	0.0893	CGGCCCGGGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	+	11.7455	4.81e-05	0.0893	GGCCTCCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	+	11.7455	4.81e-05	0.0893	AGCCTCGGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	+	11.7455	4.81e-05	0.0893	AGCCTCGGGGCC
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	+	11.7455	4.81e-05	0.0893	GGCCTCCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	-	11.7455	4.81e-05	0.0893	GGCCTCCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	-	11.7455	4.81e-05	0.0893	GGCCTCCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	-	11.7455	4.81e-05	0.0893	AGCCTCGGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	-	11.7455	4.81e-05	0.0893	AGCCTCGGGGCC
TFAP2B	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	-	11.7455	4.81e-05	0.0893	GGCCTCCGGGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	-	11.7455	4.81e-05	0.0893	CGGCCCGGGGCG
SP3	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	77	87	+	11.5203	4.81e-05	0.0194	ACCACTCCTCC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	+	12.4242	4.81e-05	0.26	GTCACGTGTA
Rarb(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	52	68	-	-0.939394	4.81e-05	0.836	AGTCCACGATGAAGTCA
MSC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	11.1951	4.81e-05	0.569	GACACCTGTC
MSC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	11.1951	4.81e-05	0.569	GACACCTGTC
MSC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	11.1951	4.81e-05	0.569	GACACCTGTC
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	60	71	+	10.8571	4.81e-05	0.17	AGTAAGGGGGAA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	-	10.8448	4.81e-05	0.0554	TCCCGTGAAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	-	10.8448	4.81e-05	0.0554	TCCCGTGAAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	-	10.8448	4.81e-05	0.0554	TCCCGTGAAGGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	27	43	-	10.5204	4.81e-05	0.338	GGGTGAGACGCGGGTCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	27	43	-	10.5204	4.81e-05	0.338	GGGTGAGACGCGGGTCT
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	80	96	-	10.5204	4.81e-05	0.338	GGGTGAGACGCGGGTCT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	80	96	-	10.5204	4.81e-05	0.338	GGGTGAGACGCGGGTCT
RARA::RXRA	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	19	35	+	10.5204	4.81e-05	0.338	GGGTGAGACGCGGGTCT
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	20	30	-	11.8462	4.81e-05	0.0744	CGCCCCAGGGA
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	95	+	11.8462	4.81e-05	0.0744	CGCCCCAGGGA
SP4	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	31	47	+	5.05455	4.81e-05	0.0255	GCGCCCACGCCCATCGT
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	27	43	-	5.05455	4.81e-05	0.0255	GCAGCACCGCCCACCAT
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	27	43	-	5.05455	4.81e-05	0.0255	GCAGCACCGCCCACCAT
SP4	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	72	88	+	5.05455	4.81e-05	0.0255	GCAGCACCGCCCACCAT
SP4	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	68	84	-	5.05455	4.81e-05	0.0255	GCGCCCACGCCCATCGT
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	70	86	-	-14.6714	4.81e-05	0.94	TGCATGCTGGGAAATCC
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	61	77	+	-14.6714	4.81e-05	0.94	TGCATGCTGGGAAATCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	16	26	-	11.5902	4.81e-05	0.0554	CCGGAAGAAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	16	26	-	11.5902	4.81e-05	0.0554	CCGGAAGAAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	63	73	+	11.5902	4.81e-05	0.0554	CCGGAACCGGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	89	99	+	11.5902	4.81e-05	0.0554	CCGGAAGAAGG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	7	20	+	11.5455	4.81e-05	0.0536	CTCTCTGCGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	10	23	+	11.5455	4.81e-05	0.0536	TGGGTCAAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	10	23	+	11.5455	4.81e-05	0.0536	TGGGTCAAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	20	33	-	11.5455	4.81e-05	0.0536	TGGGTCAAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	20	33	-	11.5455	4.81e-05	0.0536	TGGGTCAAGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	53	66	-	11.5455	4.81e-05	0.0536	GCGGGAGCGGCCTC
Tcf12	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	10	20	-	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	54	+	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	54	+	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	54	+	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	54	+	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Tcf12	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	105	+	12.4694	4.81e-05	0.162	CGCAGCTGGCG
Gata4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	8	18	-	12.2414	4.81e-05	1	TGTTATCTCTT
Gata4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	8	18	-	12.2414	4.81e-05	1	TGTTATCTCTT
Gata4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	28	38	+	12.2414	4.81e-05	1	CGTTATCTGCG
Gata4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	28	38	+	12.2414	4.81e-05	1	CGTTATCTGCG
Gata4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	76	86	+	12.2414	4.81e-05	1	CGTTATCTGCG
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	76	86	+	12.2414	4.81e-05	1	CGTTATCTGCG
Gata4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	76	86	+	12.2414	4.81e-05	1	CGTTATCTGCG
EGR3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	5	19	+	7.46552	4.81e-05	0.0381	CTCCGCCCCTGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	13	27	+	7.46552	4.81e-05	0.0381	CCACGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	13	27	+	7.46552	4.81e-05	0.0381	CCACGGCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	13	27	+	7.46552	4.81e-05	0.0381	CCACGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	13	27	+	7.46552	4.81e-05	0.0381	CCACGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	36	50	+	7.46552	4.81e-05	0.0381	CTCCGCCCCTGCCCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	36	50	+	7.46552	4.81e-05	0.0381	CTCCGCCCCTGCCCT
EGR3	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	58	72	-	7.46552	4.81e-05	0.0381	TCCCTCCCCCACAAC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	96	110	-	7.46552	4.81e-05	0.0381	CTCCGCCCCTGCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	79	89	+	11.1724	4.81e-05	0.0182	GCCACACCCCG
Rarb	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	37	52	+	-2.68966	4.81e-05	0.983	CTGGGTCAACGGCTCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	54	68	-	10.1571	4.81e-05	0.119	CGAGGGCGGAAGTGA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	54	68	-	10.1571	4.81e-05	0.119	CGAGGGCGGAAGTGA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	54	68	-	10.1571	4.81e-05	0.119	CGAGGGCGGAAGTGA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	78	92	-	10.1571	4.81e-05	0.119	CGAGGGCGGAAGTGA
STAT1::STAT2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	57	71	+	10.3788	4.81e-05	0.298	CTGCTTTTATTTTCT
STAT1::STAT2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	44	58	-	10.3788	4.81e-05	0.298	CTGCTTTTATTTTCT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	29	39	-	12.0612	4.81e-05	0.788	ATTACACAATC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	29	39	-	12.0612	4.81e-05	0.788	ATTACACAATC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	40	50	+	12.0612	4.81e-05	0.788	ATTACACAATC
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	40	50	+	12.0612	4.81e-05	0.788	ATTACACAATC
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	32	42	-	12.0612	4.81e-05	0.788	ATTGCAAAATG
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	69	79	+	12.0612	4.81e-05	0.788	ATTGCAAAATG
KLF13	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	60	77	-	5.81034	4.81e-05	0.256	AGGCCCCGCCCCTTTTCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	73	88	+	10.8909	4.81e-05	0.0384	GCCCCCCCCCGCCCCC
RORA(var.2)	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	42	55	+	7.35955	4.82e-05	1	AATAAGTAGGTCTT
RORA(var.2)	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	60	73	-	7.35955	4.82e-05	1	AATAAGTAGGTCTT
RFX4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	+	10.6212	4.82e-05	0.262	CGTTGCCAGGATACCG
RFX4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	-	10.6212	4.82e-05	0.262	CGTTGCCAGGATACCG
ZIC4	WILDTYPE__mrna.flip.sense__chr10:6622203..6622317,-__1147.1.0.0	6	20	+	11	4.82e-05	0.109	GCGCACCCGCAGTGC
ZIC4	FLIPPED__mrna.flip.antisense__chr10:6622203..6622317,+__2478.1.0.0	95	109	-	11	4.82e-05	0.109	GCGCACCCGCAGTGC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	31	49	+	11.2097	4.82e-05	0.671	TGACATGCTGTACCCTGAC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	31	49	+	11.2097	4.82e-05	0.671	TGACATGCTGTACCCTGAC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	81	99	-	11.2097	4.82e-05	0.671	TGACATGCTGTACCCTGAC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	81	99	-	11.2097	4.82e-05	0.671	TGACATGCTGTACCCTGAC
Mafb	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	38	49	-	11.7528	4.82e-05	0.865	GTCATGCTGACG
Mafb	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	13	24	+	11.7528	4.82e-05	0.865	GTCATGCTGACG
FOXF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	69	82	-	11.8111	4.82e-05	1	CCCAAATAAACAAC
FOXF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	69	82	-	11.8111	4.82e-05	1	CCCAAATAAACAAC
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	73	86	-	8.42857	4.82e-05	0.156	TCGTGGCGTCATCA
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	73	86	-	8.42857	4.82e-05	0.156	TCGTGGCGTCATCA
Gata1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	23	33	-	12	4.82e-05	1	CCTTTATCTCC
Gata1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	48	58	+	12	4.82e-05	1	CCTTTATCTCC
Gata1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	82	92	+	12	4.82e-05	1	CCTTTATCTCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	11	24	+	9.67241	4.82e-05	0.0317	AACTCCGCCCCCAG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	2	9	+	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	4	11	-	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	10	17	-	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	25	32	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	28	35	-	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	36	43	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	36	43	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	48	55	+	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	53	60	+	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	61	68	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	61	68	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	61	68	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	61	68	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	55	62	-	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	56	63	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	56	63	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	56	63	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	56	63	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	80	87	+	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	94	101	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	94	101	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	94	101	-	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	94	101	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	94	101	-	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	104	111	+	10.2667	4.82e-05	0.645	TGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	105	112	+	10.2667	4.82e-05	0.645	TGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	105	112	+	10.2667	4.82e-05	0.645	TGTCACGG
RXRB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	78	91	-	2.01818	4.82e-05	0.505	GGGGTGAAAGTTGC
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	33	50	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	33	50	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	29	46	-	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	35	52	-	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	35	52	-	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	35	52	-	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	63	80	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	69	86	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	69	86	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
TP73	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	69	86	+	9.44231	4.82e-05	0.649	CACGTGTCTGCACTCGCT
JUND	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	54	64	+	11.4681	4.82e-05	0.2	GATGACTCAGA
JUND	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	51	61	-	11.4681	4.82e-05	0.2	GATGACTCAGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	34	47	-	6.66327	4.82e-05	0.0719	GGGGGTTCATGGGG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	9	19	-	10.2414	4.82e-05	0.0818	CCACCCACACA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	9	19	-	10.2414	4.82e-05	0.0818	CCACCCACACA
EGR2	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	29	39	+	10.2414	4.82e-05	0.0818	CCACCCACACA
EGR2	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	22	32	-	10.2414	4.82e-05	0.0818	CCGCCCACGGC
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	35	45	-	10.2414	4.82e-05	0.0818	CCGCACACGCC
EGR2	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	47	57	-	10.2414	4.82e-05	0.0818	CCACCCACACA
EGR2	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	58	68	+	10.2414	4.82e-05	0.0818	CCACCCACACA
EGR2	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	76	86	-	10.2414	4.82e-05	0.0818	CCACCCACACA
TGIF2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	-	8.97248	4.82e-05	0.848	AGGCAGCTGCCA
TGIF2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	+	8.97248	4.82e-05	0.848	AGGCAGCTGCCA
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	63	72	-	11.4	4.82e-05	1	GTGGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	63	72	-	11.4	4.82e-05	1	GTGGTGTGAA
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	49	58	+	11.8202	4.83e-05	0.93	CGTCTGGCTC
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	88	97	+	11.8202	4.83e-05	0.93	CGTCTGGCTC
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	88	97	+	11.8202	4.83e-05	0.93	CGTCTGGCTC
E2F4	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	19	29	-	11.7069	4.83e-05	0.0463	GGGCGCGAGCT
E2F4	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	86	96	+	11.7069	4.83e-05	0.0463	GGGCGCGAGCT
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	73	87	+	11.3514	4.83e-05	0.177	CAGGGTCAGAGGCCG
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	28	42	-	11.3514	4.83e-05	0.177	CAGGGTCAGAGGCCG
ELK4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	98	-	11.9091	4.83e-05	0.0583	TTACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	17	27	+	11.9091	4.83e-05	0.0583	TTACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	17	27	+	11.9091	4.83e-05	0.0583	TTACTTCCGCC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	45	55	+	11.9091	4.83e-05	0.0583	GCATTTCCGCT
CTCF	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	15	33	-	9.47541	4.83e-05	0.118	AGGCCGCCGGATGGCGTAG
CTCF	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	82	100	+	9.47541	4.83e-05	0.118	AGGCCGCCGGATGGCGTAG
VAX2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	+	10.5591	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	+	10.381	4.83e-05	1	TTAATTAC
Foxj2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	1	8	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	1	8	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	1	8	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	4	11	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	4	11	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	94	101	+	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	102	109	+	12.8065	4.83e-05	1	ATAAACAA
VAX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	-	10.5591	4.83e-05	1	TTAATTAC
VAX2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	-	10.5591	4.83e-05	1	TTAATTAC
VAX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	-	10.5591	4.83e-05	1	TTAATTAC
VAX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	-	10.5591	4.83e-05	1	TTAATTAC
VAX2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	-	10.5591	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	-	10.381	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	-	10.381	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	-	10.381	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	-	10.381	4.83e-05	1	TTAATTAC
VAX1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	-	10.381	4.83e-05	1	TTAATTAC
Foxj2	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	14	21	-	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	70	77	-	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	70	77	-	12.8065	4.83e-05	1	ATAAACAA
Foxj2	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	82	89	-	12.8065	4.83e-05	1	ATAAACAA
Foxj2	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	107	114	-	12.8065	4.83e-05	1	ATAAACAA
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	14	24	-	9.36207	4.83e-05	1	TCAAGGTTACT
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	14	24	-	9.36207	4.83e-05	1	TCAAGGTTACT
ELF4	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	29	40	+	9.98361	4.83e-05	0.1	GCACCGGAAGCG
ELF4	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	19	30	-	9.98361	4.83e-05	0.1	GCACCGGAAGCG
ELF4	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	75	86	-	9.98361	4.83e-05	0.1	GCACCGGAAGCG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	64	74	-	11.6	4.83e-05	0.193	GATGAGTCACT
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	14	25	+	9.72727	4.83e-05	0.195	AGTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	14	25	+	9.72727	4.83e-05	0.195	AGTGACGTCAGA
Creb5	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	95	106	+	9.72727	4.83e-05	0.195	AGTGACGTCAGA
Creb5	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	20	-	9.72727	4.83e-05	0.195	AGTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	26	37	-	9.72727	4.83e-05	0.195	AGTGACATCATT
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	26	37	-	9.72727	4.83e-05	0.195	AGTGACATCATT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	26	37	-	9.72727	4.83e-05	0.195	AGTGACATCATT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	26	37	-	9.72727	4.83e-05	0.195	AGTGACATCATT
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	26	37	-	9.72727	4.83e-05	0.195	AGTGACATCATT
Creb5	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	101	-	9.72727	4.83e-05	0.195	AGTGACGTCAGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	10	21	+	11.6837	4.83e-05	0.0857	CGCCCTTGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	35	46	-	11.6837	4.83e-05	0.0857	CGCCCTTGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	+	11.6837	4.83e-05	0.0857	CGCCCCCAGGGG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	+	11.6837	4.83e-05	0.0857	CGCCCCCAGGGG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	+	11.6837	4.83e-05	0.0857	CGCCCCCAGGGG
TFAP2C	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	-	11.6837	4.83e-05	0.0857	CGCCCCCAGGGG
SREBF1	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	72	81	+	12.0366	4.83e-05	0.472	CTCACCTCAG
NHLH1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	-	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	+	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	+	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	+	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	+	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	+	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	-	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	-	11.5345	4.83e-05	0.126	GGCACCTGCG
NHLH1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	+	11.5345	4.83e-05	0.126	GGCACCTGCG
TAL1::TCF3	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	78	-	11.6517	4.83e-05	1	AAAACAGCTGCT
TAL1::TCF3	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	94	-	11.6517	4.83e-05	1	AAAACAGCTGCT
ELK3	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.7414	4.83e-05	0.112	ACAGGAAGTA
ELK3	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.7414	4.83e-05	0.112	ACAGGAAGTA
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	10.3091	4.83e-05	0.235	AACACGTGAG
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	10.3091	4.83e-05	0.235	AACACGTGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	10.3091	4.83e-05	0.235	AACACGTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	10.3091	4.83e-05	0.235	AACACGTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	10.3091	4.83e-05	0.235	AACACGTGAG
IRF8	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	56	69	+	-0.763636	4.83e-05	0.732	ATGAAATTGAAAAT
SCRT1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	34	48	+	8.37705	4.83e-05	0.755	CCCCTACAGGTGGGA
MEF2D	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	71	82	-	7.85455	4.83e-05	0.946	ACTGAAAATAGC
ETS1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
ETS1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	11.9138	4.83e-05	0.103	ACAGGAAGTC
EGR2	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	10	20	-	10.2241	4.83e-05	0.0818	GCGCCGACGCG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	64	77	+	11.9038	4.83e-05	0.22	AAGACCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	30	43	-	11.9038	4.83e-05	0.22	GGCACGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	50	63	-	11.9038	4.83e-05	0.22	GGCACGTGACTCAG
EGR1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	5	18	+	10.9808	4.83e-05	0.0206	CCTCCACCGCCGGT
EGR1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	8	21	+	10.9808	4.83e-05	0.0206	GCCCCTCTCCCGGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	9	22	-	10.9808	4.83e-05	0.0206	GACCCACCCCTTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	21	34	-	10.9808	4.83e-05	0.0206	TCTTCGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	76	89	+	10.9808	4.83e-05	0.0206	CTTCCTCTCCCACC
EGR1	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	81	94	+	10.9808	4.83e-05	0.0206	TCTTCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	94	107	-	10.9808	4.83e-05	0.0206	GCCCCTCTCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	94	107	-	10.9808	4.83e-05	0.0206	GCCCCTCTCCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	94	107	-	10.9808	4.83e-05	0.0206	GCCCCTCTCCCGGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	94	107	-	10.9808	4.83e-05	0.0206	GCCCCTCTCCCGGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	97	110	-	10.9808	4.83e-05	0.0206	TCGCAGCCCCCTCG
EGR1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	97	110	-	10.9808	4.83e-05	0.0206	CCTCCACCGCCGGT
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	15	28	+	3.04255	4.83e-05	0.48	GAGGTCAGAGGGCC
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	15	28	+	3.04255	4.83e-05	0.48	GAGGTCAGAGGGCC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	99	113	-	9	4.83e-05	0.106	TCCCACCCCCGGCGG
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	3	19	+	5.03636	4.83e-05	0.0255	GGCCCCCCGCCCCCTTA
SP4	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	17	33	+	5.03636	4.83e-05	0.0255	CCCACCACGCCCAGCTG
mix-a	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	80	-	12.1746	4.83e-05	1	TGTTAATTAAT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	+	11.8909	4.83e-05	0.0517	GGCCTCCGGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	+	11.8909	4.83e-05	0.0517	GGCCTCCGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	-	11.8909	4.83e-05	0.0517	GGCCTCCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	+	11.8909	4.83e-05	0.0517	GGCCTCCGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	-	11.8909	4.83e-05	0.0517	GGCCTCCGGCG
PLAG1	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	15	28	+	6.65306	4.84e-05	0.0719	GTGGCCGTCGGCGG
PLAG1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	42	55	-	6.65306	4.84e-05	0.0719	GTGGCCGTCGGCGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	60	73	+	6.65306	4.84e-05	0.0719	GTGGCCGTCGGCGG
PLAG1	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	87	100	-	6.65306	4.84e-05	0.0719	GTGGCCGTCGGCGG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	17	27	-	11.6182	4.84e-05	0.184	CTGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	34	44	+	11.6182	4.84e-05	0.184	CTGTGAGTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	31	41	-	11.6182	4.84e-05	0.184	CTGTGAGTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	31	41	-	11.6182	4.84e-05	0.184	CTGTGAGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	77	87	+	11.6182	4.84e-05	0.184	CTGTGAGTCAC
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	42	55	+	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	42	55	+	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	42	55	+	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	42	55	+	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	42	55	+	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
Rxra	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	60	73	-	4.15854	4.84e-05	0.414	GCGGGCGAAGGTCA
GLIS2	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	12	25	+	9.06557	4.84e-05	0.185	CGCCCCAAGCGGAG
GLIS2	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	90	103	-	9.06557	4.84e-05	0.185	CGCCCCAAGCGGAG
TFCP2	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	97	106	+	11.8485	4.84e-05	1	GAACCGGTCC
TFCP2	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	100	109	+	11.8485	4.84e-05	1	GAACCGGTCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	22	36	+	7.44828	4.84e-05	0.0381	GCCCGCCCGCGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	22	36	+	7.44828	4.84e-05	0.0381	GCCCGCCCGCGCCGG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	51	67	+	-4.04494	4.84e-05	1	TGAGGTCGAGTGTCAAG
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	51	67	+	-4.04494	4.84e-05	1	TGAGGTCGAGTGTCAAG
NR1H2::RXRA	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	48	64	-	-4.04494	4.84e-05	1	TGAGGTCGAGTGTCAAG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	25	36	+	4.55172	4.84e-05	0.189	TGCCACGTGCGC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	40	-	4.55172	4.84e-05	0.189	TGCCACGTGCGC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	103	+	4.55172	4.84e-05	0.189	AGGCACGTGTTT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	103	+	4.55172	4.84e-05	0.189	AGGCACGTGTTT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	10.7241	4.84e-05	0.242	AACACGTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	10.7241	4.84e-05	0.242	AACACGTGAG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	10.7241	4.84e-05	0.242	AACACGTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	10.7241	4.84e-05	0.242	AACACGTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	10.7241	4.84e-05	0.242	AACACGTGAG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	27	35	+	12.2909	4.84e-05	0.383	CCTTACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	27	35	+	12.2909	4.84e-05	0.383	CCTTACCTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.7273	4.84e-05	0.108	AGCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.7273	4.84e-05	0.108	AGCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.7273	4.84e-05	0.108	AGCGGAAGCG
Zfx	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	4	17	+	11.5303	4.84e-05	0.0536	CCGTGCGTGGCCTC
Zfx	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	44	57	+	11.5303	4.84e-05	0.0536	CCGGGAGCGGCCTC
Zfx	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	58	71	-	11.5303	4.84e-05	0.0536	CCGGGAGCGGCCTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	33	47	-	11.1207	4.84e-05	0.0119	ACCCCACCTCCGCTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	33	47	-	11.1207	4.84e-05	0.0119	ACCCCACCTCCGCTT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	11	25	+	10.1429	4.84e-05	0.119	AGGGAGCAGAGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	11	25	+	10.1429	4.84e-05	0.119	AGGGAGCAGAGGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	36	47	+	11.7636	4.84e-05	0.055	CGCCCCTGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	36	47	+	11.7636	4.84e-05	0.055	CGCCCCTGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	36	47	+	11.7636	4.84e-05	0.055	CGCCCCTGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	41	52	+	11.7636	4.84e-05	0.055	CGCCGGAGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	+	11.7636	4.84e-05	0.055	GGCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	-	11.7636	4.84e-05	0.055	GGCCCCGGGGCC
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	38	49	+	10.8367	4.84e-05	0.17	GTGCAGGGGGAG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	38	49	+	10.8367	4.84e-05	0.17	GTGCAGGGGGAG
NRF1	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	1	11	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	1	11	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	14	24	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	24	34	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	24	34	+	10.8909	4.84e-05	0.0175	GAGCGTGTGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	28	38	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	33	43	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	33	43	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	49	59	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	50	60	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	58	68	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	58	68	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	92	102	+	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	13	23	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	13	23	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	47	57	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	47	57	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	55	65	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	56	66	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	77	87	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	81	91	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	91	101	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	104	114	-	10.8909	4.84e-05	0.0175	CCGCGCGCGCC
ESR1	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	29	45	+	1.16667	4.84e-05	0.514	TGAGTCAGGCTGACCGG
Nr2f6(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	36	50	+	-3.95714	4.84e-05	0.913	GGGGCCTCGAGGTCA
E2F8	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	79	90	-	6.13415	4.84e-05	0.631	TTTCTCATCAAA
MNX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	84	93	-	10.7463	4.84e-05	1	GACAATTAAA
MNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	84	93	-	10.7463	4.84e-05	1	GACAATTAAA
MNX1	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	31	+	10.7463	4.84e-05	1	GACAATTAAA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	29	40	+	11.3448	4.84e-05	0.365	CCGCCCACCCAC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	29	40	+	11.3448	4.84e-05	0.365	CCGCCCACCCAC
EHF	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	13	24	+	10.9672	4.84e-05	0.125	TAGGCGGAAATG
GLI2	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	7	18	+	11.0345	4.84e-05	0.33	GCGGCCACGCTT
GLI2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	28	39	+	11.0345	4.84e-05	0.33	GCTACCACAAAG
GLI2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	76	87	-	11.0345	4.84e-05	0.33	GCTACCACAAAG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	97	108	-	11.0345	4.84e-05	0.33	GCGGCCACGCTT
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	97	108	-	11.0345	4.84e-05	0.33	GCGGCCACGCTT
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	97	108	-	11.0345	4.84e-05	0.33	GCGGCCACGCTT
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	97	108	-	11.0345	4.84e-05	0.33	GCGGCCACGCTT
Nr2e1	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	35	43	-	11.8226	4.84e-05	1	AAAAGTCAC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	+	11.1148	4.84e-05	0.0586	GGCCCGGCGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	+	11.1148	4.84e-05	0.0586	GGCCCGGCGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	+	11.1148	4.84e-05	0.0586	GGCCCGGCGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	+	11.1148	4.84e-05	0.0586	GGCCCGGCGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	-	11.1148	4.84e-05	0.0586	CGCCGGAAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	-	11.1148	4.84e-05	0.0586	CGCCGGAAGGGCA
Stat4	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	101	114	+	11.931	4.84e-05	0.271	TTGACAGGAAGCAA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	63	82	+	4.79817	4.85e-05	0.0561	CTCCCCACTACCCAACCAGA
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	63	82	+	4.79817	4.85e-05	0.0561	CTCCCCACTACCCAACCAGA
Rfx1	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	91	104	+	10.7931	4.85e-05	0.238	AGAGCCCTGGAAAC
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	21	30	-	11.7049	4.85e-05	0.718	CATGTGGGTA
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	21	30	-	11.7049	4.85e-05	0.718	CATGTGGGTA
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	21	30	-	11.7049	4.85e-05	0.718	CATGTGGGTA
MLX	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	10.9286	4.85e-05	0.229	GTCGCGTGAC
MLX	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	10.9286	4.85e-05	0.229	GTCGCGTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	40	50	+	11.1538	4.85e-05	0.823	GATTTGCTGAG
NRL	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	41	51	-	11.1538	4.85e-05	0.823	GATTTGCTGAG
Klf4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	26	35	+	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	24	33	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	30	39	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	45	54	+	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	37	46	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	37	46	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	50	59	+	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	46	55	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	60	69	+	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	51	60	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	56	65	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	56	65	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	56	65	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	56	65	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	56	65	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	61	70	-	11.4592	4.85e-05	0.0203	TGGGCGGGAC
Dmbx1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	14	30	-	11.9342	4.85e-05	1	GGAAACGGATTATCCGG
Dmbx1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	85	101	+	11.9342	4.85e-05	1	GGAAACGGATTATCCGG
Dmbx1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	85	101	+	11.9342	4.85e-05	1	GGAAACGGATTATCCGG
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	61	71	-	11.5657	4.85e-05	1	TGACGTAACAC
NFIL3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	61	71	-	11.5657	4.85e-05	1	TGACGTAACAC
ELF4	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	24	35	+	9.96721	4.85e-05	0.1	TAACAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	34	45	+	9.96721	4.85e-05	0.1	TAACAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	34	45	+	9.96721	4.85e-05	0.1	TAACAGGAAGTT
ELF4	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	81	-	9.96721	4.85e-05	0.1	TAACAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	91	-	9.96721	4.85e-05	0.1	TAACAGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	91	-	9.96721	4.85e-05	0.1	TAACAGGAAGTT
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	84	97	-	11.4032	4.85e-05	0.411	CTTCCTTGAGAGAA
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	84	97	-	11.4032	4.85e-05	0.411	CTTCCTTGAGAGAA
POU1F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	18	31	+	11.1379	4.85e-05	1	ATGATGCAAATGTC
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	18	31	+	11.1379	4.85e-05	1	ATGATGCAAATGTC
POU1F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	96	109	-	11.1379	4.85e-05	1	ATGATGCAAATGTC
POU1F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	96	109	-	11.1379	4.85e-05	1	ATGATGCAAATGTC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	67	78	+	4.08621	4.85e-05	0.296	CGGCACGTGACC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	67	78	+	4.08621	4.85e-05	0.296	CGGCACGTGACC
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	14	29	+	2.82759	4.85e-05	0.327	CTCCCAGCAAACACCA
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	14	29	+	2.82759	4.85e-05	0.327	CTCCCAGCAAACACCA
SP1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	9	19	+	11.6538	4.85e-05	0.0137	CTCCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	34	44	+	11.6538	4.85e-05	0.0137	CCCCCTCCTCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	34	44	+	11.6538	4.85e-05	0.0137	CCCCCTCCTCA
SP1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	50	60	+	11.6538	4.85e-05	0.0137	CTCCCTCCCCA
SP1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	55	65	-	11.6538	4.85e-05	0.0137	CTCCCTCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	96	106	-	11.6538	4.85e-05	0.0137	CTCCCTCCCCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	29	42	+	9.65517	4.85e-05	0.0318	CGCCCCGCCCCGTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	29	42	+	9.65517	4.85e-05	0.0318	CGCCCCGCCCCGTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	29	42	+	9.65517	4.85e-05	0.0318	CGCCCCGCCCCGTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	45	58	-	9.65517	4.85e-05	0.0318	CTCCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	45	58	-	9.65517	4.85e-05	0.0318	CTCCCCGCCCCTCT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	3	14	-	11.5783	4.85e-05	1	TGATGCAAATGT
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	3	14	-	11.5783	4.85e-05	1	TGATGCAAATGT
POU3F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	19	30	+	11.5783	4.85e-05	1	TGATGCAAATGT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	19	30	+	11.5783	4.85e-05	1	TGATGCAAATGT
POU3F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	97	108	-	11.5783	4.85e-05	1	TGATGCAAATGT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	97	108	-	11.5783	4.85e-05	1	TGATGCAAATGT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	25	45	-	10.2857	4.85e-05	0.0164	AAAGGAAGGATTGCTGGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	59	79	-	10.2857	4.85e-05	0.0164	AAAGGAAGGATTGCTGGAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	63	83	-	10.2857	4.85e-05	0.0164	AAATGAGGAAGGAGTGGAGCT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	69	89	-	10.2857	4.85e-05	0.0164	GGGGCACTCTGGAGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	69	89	-	10.2857	4.85e-05	0.0164	GGGGCACTCTGGAGGGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	74	94	-	10.2857	4.85e-05	0.0164	GGAACAGGCGTGGACAGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	76	96	-	10.2857	4.85e-05	0.0164	GAGTGAGGGAGAGAAGAGGTT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	86	106	-	10.2857	4.85e-05	0.0164	TGGGGGGGGCGTGAAGGAGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	9	29	+	10.2857	4.85e-05	0.0164	TGGGGGGGGCGTGAAGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	19	39	+	10.2857	4.85e-05	0.0164	GAGTGAGGGAGAGAAGAGGTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	36	56	+	10.2857	4.85e-05	0.0164	AGAGGAAGCGAGTAAGAGAAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	67	87	+	10.2857	4.85e-05	0.0164	GAGGCAGTGTGATAGAGAGGG
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	45	57	-	11.9184	4.85e-05	0.427	TGAAGGTCAGAGG
BCL6B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	4	20	+	-14.7286	4.86e-05	0.94	TGCATTCTTGGAGCTCA
BCL6B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	4	20	+	-14.7286	4.86e-05	0.94	TGCATTCTTGGAGCTCA
RELA	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	9	18	+	11.1735	4.86e-05	0.219	CTGGATTTCC
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	101	111	-	12.069	4.86e-05	0.902	TGTTGTTTATT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	12	23	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	12	23	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	29	40	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	75	86	+	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	75	86	+	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	100	111	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	100	111	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	100	111	-	11.3947	4.86e-05	0.0301	CCTCCGCCCACC
NFATC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	41	50	+	11.2727	4.86e-05	0.908	TTTTTCCAAT
NFATC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	41	50	+	11.2727	4.86e-05	0.908	TTTTTCCAAT
Gmeb1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	18	34	-	11.0132	4.86e-05	0.614	CCTGTGACGTCAGCTGA
Gmeb1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	18	34	-	11.0132	4.86e-05	0.614	CCTGTGACGTCAGCTGA
VENTX	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	106	114	+	11.9787	4.86e-05	1	AACAATTAG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	30	49	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	30	49	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	30	49	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	75	94	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	75	94	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	75	94	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	75	94	-	4.78899	4.86e-05	0.0561	ACAGCCAGCAACCACAACCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.4898	4.86e-05	0.119	CACACGTGAT
CDX2	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	47	57	+	12.2881	4.86e-05	1	AGCCAATAAAA
NFKB2	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	37	49	+	9.22727	4.86e-05	0.258	AGGGGCGGCCCCT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	53	67	+	8.98571	4.86e-05	0.106	TACGCCCTGGCGCGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	53	67	+	8.98571	4.86e-05	0.106	TACGCCCTGGCGCGC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	43	53	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	43	53	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	43	53	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	43	53	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	95	105	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	95	105	-	11.8269	4.86e-05	0.0744	AGCCCCAGGGA
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	19	37	-	9.45902	4.86e-05	0.118	GAGTCACCAGGGGGAAGGT
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	19	37	-	9.45902	4.86e-05	0.118	GAGTCACCAGGGGGAAGGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	15	29	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	15	29	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	15	29	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	15	29	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	15	29	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	16	30	-	9.19672	4.86e-05	0.0584	AGCCCCGCCCCCCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	74	88	+	8.31579	4.86e-05	0.224	GTCGTTACGCAGCGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	74	88	+	8.31579	4.86e-05	0.224	GTCGTTACGCAGCGC
POU4F2	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	22	37	+	8.07273	4.86e-05	1	ATGCGTAATTTATGGG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	94	108	+	10.9818	4.86e-05	0.109	GCCCTCCTGCTGATG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.8846	4.86e-05	0.0973	CCCGGAAATG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.8846	4.86e-05	0.0973	CCCGGAAATG
INSM1	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	6	17	-	10.8265	4.86e-05	0.17	TTGCTGGGGTTG
INSM1	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	45	56	-	10.8265	4.86e-05	0.17	TTGCTGGGGTTG
INSM1	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	59	70	+	10.8265	4.86e-05	0.17	TTGCTGGGGTTG
INSM1	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	98	109	+	10.8265	4.86e-05	0.17	TTGCTGGGGTTG
NKX2-3	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	32	41	+	11.9615	4.86e-05	1	CCCACTTCAG
NKX2-3	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	37	46	-	11.9615	4.86e-05	1	CCCACTTCAG
NKX2-3	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	69	78	+	11.9615	4.86e-05	1	CCCACTTCAG
NKX2-3	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	72	81	+	11.9615	4.86e-05	1	CCCACTTCAG
NKX2-3	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	74	83	-	11.9615	4.86e-05	1	CCCACTTCAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	1	11	+	11.8367	4.86e-05	0.198	CGCTGACTCAT
JUNB	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	27	37	+	11.8367	4.86e-05	0.198	TGGTGATTCAG
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	51	65	+	-1.14545	4.87e-05	0.545	ATTTAAACAGAAAGC
FOXB1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	18	28	+	11.6154	4.87e-05	1	TGAGTAAACAA
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	25	35	-	11.6154	4.87e-05	1	TGAGTAAACAA
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	25	35	-	11.6154	4.87e-05	1	TGAGTAAACAA
FOXB1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	80	90	+	11.6154	4.87e-05	1	TGAGTAAACAA
FOXB1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	87	97	-	11.6154	4.87e-05	1	TGAGTAAACAA
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	3	12	+	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	3	12	+	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	61	70	+	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	61	70	+	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	65	74	+	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	41	50	-	12.5714	4.87e-05	0.754	TCTTTGTTTT
Sox6	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	103	112	-	12.5714	4.87e-05	0.754	TCTTTGTTTT
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	33	45	+	12.4286	4.87e-05	0.159	CCCACCTGCGCCC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	33	45	+	12.4286	4.87e-05	0.159	CCCACCTGCGCCC
Myod1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	70	82	-	12.4286	4.87e-05	0.159	CCCACCTGCGCCC
SPI1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	50	63	+	4.12727	4.87e-05	0.179	TAGTAGCGGAAGTC
SPI1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	65	-	4.12727	4.87e-05	0.179	TAGTAGCGGAAGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	15	28	-	7.34043	4.87e-05	0.0994	TCCTCCCTGCAGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	15	28	-	7.34043	4.87e-05	0.0994	TCCTCCCTGCAGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	49	62	+	7.34043	4.87e-05	0.0994	GCGCTCCTGCTGTG
ZIC1	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	53	66	-	7.34043	4.87e-05	0.0994	GCGCTCCTGCTGTG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	12	+	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	39	50	+	11.7273	4.87e-05	0.0893	GACCCTAGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	62	+	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	62	+	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	62	+	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	62	+	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	67	78	+	11.7273	4.87e-05	0.0893	CGCCCCGAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	67	78	+	11.7273	4.87e-05	0.0893	CGCCCCGAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	11	22	-	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	11	22	-	11.7273	4.87e-05	0.0893	CGCCCCCGGGGT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	36	47	-	11.7273	4.87e-05	0.0893	GACCCTAGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	36	47	-	11.7273	4.87e-05	0.0893	GACCCTAGGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	47	58	-	11.7273	4.87e-05	0.0893	CGCCCCGAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	47	58	-	11.7273	4.87e-05	0.0893	CGCCCCGAGCCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.7234	4.87e-05	0.115	CCCGGAAATG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.7234	4.87e-05	0.115	CCCGGAAATG
ZNF740	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	100	109	+	11.2569	4.87e-05	0.0548	TTCCCCCCAC
ZNF740	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	6	15	-	11.2569	4.87e-05	0.0548	TTCCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	36	45	-	11.2569	4.87e-05	0.0548	TTCCCCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	42	51	-	11.2569	4.87e-05	0.0548	TTCCCCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	62	71	-	11.2569	4.87e-05	0.0548	TTCCCCCCAC
ELK1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	27	36	-	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	36	45	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	44	53	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	54	63	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	54	63	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	54	63	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	54	63	+	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	62	71	-	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	62	71	-	10.9149	4.87e-05	0.0859	ACCGGAACCG
ELK1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	70	79	-	10.9149	4.87e-05	0.0859	ACCGGAACCG
Mlxip	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	6	13	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	7	14	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	12	19	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	21	28	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	25	32	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	25	32	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	32	39	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	32	39	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	39	46	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	41	48	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	40	47	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	46	53	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	46	53	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	46	53	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	55	62	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	62	69	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	68	75	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	68	75	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	68	75	+	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	67	74	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	69	76	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	87	94	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	96	103	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	96	103	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	96	103	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	96	103	-	13.1311	4.87e-05	0.275	TCACGTGT
Mlxip	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	102	109	-	13.1311	4.87e-05	0.275	TCACGTGT
Id2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	26	33	+	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	48	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	48	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	41	48	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	41	48	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	82	89	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	82	89	-	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	94	101	+	12.8852	4.87e-05	0.306	GCACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	94	101	+	12.8852	4.87e-05	0.306	GCACGTGT
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	83	94	-	7.85714	4.87e-05	0.167	CATTACATCATT
Znf423	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	99	113	+	6.86517	4.87e-05	0.266	AGCCACCTAGGGGCC
Stat5a::Stat5b	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	63	73	+	12.0816	4.87e-05	0.318	GTTTCCCGGAG
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	86	96	+	12.0816	4.87e-05	0.318	GATTCTCAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	18	28	-	12.0816	4.87e-05	0.318	GATTCTCAGAA
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	-	11.9091	4.87e-05	0.721	GTTGTGCAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	-	11.9091	4.87e-05	0.721	GTTGTGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	-	11.9091	4.87e-05	0.721	GTTGTGCAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	+	11.9091	4.87e-05	0.721	GTTGTGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	+	11.9091	4.87e-05	0.721	GTTGTGCAAC
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	37	53	+	6.25532	4.87e-05	0.952	CGGGACGTTTCGTCCTC
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	37	53	+	6.25532	4.87e-05	0.952	CGGGACGTTTCGTCCTC
REST	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	48	68	-	6.02041	4.87e-05	0.219	GTAGGGACCTGGGACAAGCGC
REST	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	90	110	-	6.02041	4.87e-05	0.219	TCCAGCACCACGAACTCCAGT
REST	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	5	25	+	6.02041	4.87e-05	0.219	TCCAGCACCACGAACTCCAGT
SP3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	14	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	20	+	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	20	+	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	38	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	38	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	38	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	41	+	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	55	+	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	58	68	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	69	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	78	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	107	+	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	8	18	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	29	39	-	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	31	41	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	31	41	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	31	41	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	31	41	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	37	47	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	46	56	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	60	70	-	11.5041	4.87e-05	0.0194	TCCCCGCCCTC
SP3	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	77	87	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
SP3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	101	111	-	11.5041	4.87e-05	0.0194	TCCCCGCCCCG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	2	13	+	9.96364	4.87e-05	0.109	CTTCCGGAAGTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	77	86	+	11.8163	4.87e-05	0.0193	TCCACTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	77	86	+	11.8163	4.87e-05	0.0193	TCCACTCCCT
RUNX1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	3	13	-	11.7586	4.87e-05	0.245	GCCTGTGGGCT
RUNX1	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	70	80	-	11.7586	4.87e-05	0.245	GCCTGTGGGCT
RUNX1	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	35	45	+	11.7586	4.87e-05	0.245	GCCTGTGGGCT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	38	48	+	11.7586	4.87e-05	0.245	GCCTGTGGGCT
RUNX1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	102	112	+	11.7586	4.87e-05	0.245	GCCTGTGGGCT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	104	114	+	11.7586	4.87e-05	0.245	CACTGTGGTTG
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	-	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	-	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	-	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	-	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	+	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	68	78	-	11.8511	4.88e-05	0.218	GGTGAGTCAGG
FOS	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	-	11.8511	4.88e-05	0.218	CCTGACTCATG
FOS	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	+	11.8511	4.88e-05	0.218	CCTGACTCATG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	24	+	11.0984	4.88e-05	0.0586	GGCCGCGGGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	+	11.0984	4.88e-05	0.0586	GCCCTCTGGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	+	11.0984	4.88e-05	0.0586	GCCCTCTGGGGCA
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	18	31	+	11.5152	4.88e-05	0.0537	GGAGCCCCAGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	84	97	-	11.5152	4.88e-05	0.0537	GGAGCCCCAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	84	97	-	11.5152	4.88e-05	0.0537	GGAGCCCCAGCCTG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	34	43	-	11.7143	4.88e-05	0.208	CCCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	49	58	-	11.7143	4.88e-05	0.208	CCCAGCTGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	11.5455	4.88e-05	0.106	ACCGGAACTG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	11.5455	4.88e-05	0.106	ACCGGAACTG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr10:9012053..9012167,+__144.1.0.0	29	43	+	10.3485	4.88e-05	0.298	AAACTTTCTTTTCCA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	78	92	+	10.3485	4.88e-05	0.298	TCAGTTTCAGTCTCG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	78	92	+	10.3485	4.88e-05	0.298	TCAGTTTCAGTCTCG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	103	113	-	11.8727	4.88e-05	0.052	AGCCCCAAGCC
NR2C2	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	13	27	+	10.1286	4.88e-05	0.119	GCTGGTCAGGGGTCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	72	86	-	10.1286	4.88e-05	0.119	CCAGCTCAGAGGCCG
NR2C2	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	88	102	-	10.1286	4.88e-05	0.119	GCTGGTCAGGGGTCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	8	21	+	10.9615	4.88e-05	0.0207	TGGCCGCTCCCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	4	17	-	10.9615	4.88e-05	0.0207	TACCTGCCCACTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	34	47	-	10.9615	4.88e-05	0.0207	TGGCCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	34	47	-	10.9615	4.88e-05	0.0207	TGGCCGCTCCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	52	65	+	10.9615	4.88e-05	0.0207	GCTCCGCCCTCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	54	67	+	10.9615	4.88e-05	0.0207	CCTCCTCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	54	67	+	10.9615	4.88e-05	0.0207	CCTCCTCCTCTGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	50	63	-	10.9615	4.88e-05	0.0207	GCTCCGCCCTCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	50	63	-	10.9615	4.88e-05	0.0207	CCTCCTCCTCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	50	63	-	10.9615	4.88e-05	0.0207	CCTCCTCCTCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	98	111	-	10.9615	4.88e-05	0.0207	GCGCCGCCGTCGCC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	33	44	-	11.3636	4.88e-05	0.109	CACCCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	33	44	-	11.3636	4.88e-05	0.109	CACCCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	48	59	+	11.3636	4.88e-05	0.109	CAGCGTCCTCCT
HINFP	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	57	68	+	11.3636	4.88e-05	0.109	GGACGTCCGGGG
HINFP	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	47	58	-	11.3636	4.88e-05	0.109	GGACGTCCGGGG
HINFP	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	71	82	+	11.3636	4.88e-05	0.109	CACCCTCCGCGG
PAX1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	77	93	-	6.69091	4.88e-05	0.614	CGTTACCGACGACTGCC
YY1	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	85	96	+	11.3077	4.88e-05	0.244	CACAATGGCAGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	+	10.8103	4.88e-05	0.0554	AGCCCCACAGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	+	10.8103	4.88e-05	0.0554	AGCCCCACAGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	+	10.8103	4.88e-05	0.0554	AGCCCCACAGGGA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	-	10.8103	4.88e-05	0.0554	TCCCCCTACGGCT
CREB3L1	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	32	45	+	9.39394	4.88e-05	0.287	GAACCACGTCCTCA
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	70	83	-	9.39394	4.88e-05	0.287	GAACCACGTCCTCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	70	83	-	9.39394	4.88e-05	0.287	GAACCACGTCCTCA
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	70	83	-	9.39394	4.88e-05	0.287	GAACCACGTCCTCA
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	70	83	-	9.39394	4.88e-05	0.287	GAACCACGTCCTCA
SCRT1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	14	28	+	8.34426	4.88e-05	0.755	ATGCAACAGTTTGCA
SCRT1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	87	101	-	8.34426	4.88e-05	0.755	ATGCAACAGTTTGCA
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	49	59	-	12.0727	4.88e-05	0.721	AAGCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	62	72	+	12.0727	4.88e-05	0.721	AAGCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	86	96	-	12.0727	4.88e-05	0.721	AGACACTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	86	96	-	12.0727	4.88e-05	0.721	AGACACTCAGC
CREB3	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	64	77	-	10.4714	4.88e-05	0.252	TTGAGACGTCAGAG
CREB3	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	38	51	+	10.4714	4.88e-05	0.252	TTGAGACGTCAGAG
SP1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	18	28	-	11.6346	4.88e-05	0.0137	TCTCCTCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	56	66	-	11.6346	4.88e-05	0.0137	TCTCCTCCCAC
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	18	28	+	11.7931	4.88e-05	0.521	TAATCAGAGCA
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	31	41	+	11.7931	4.88e-05	0.521	TAATCAGAGCA
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	74	84	-	11.7931	4.88e-05	0.521	TAATCAGAGCA
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	87	97	-	11.7931	4.88e-05	0.521	TAATCAGAGCA
TBX19	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	22	41	-	9.96341	4.88e-05	1	GGTAACACGTGGATGACAGC
TBX19	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	22	41	-	9.96341	4.88e-05	1	GGTAACACGTGGATGACAGC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	24	32	+	11.8202	4.88e-05	1	CCCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	24	32	+	11.8202	4.88e-05	1	CCCATTGTG
Sox17	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	24	32	+	11.8202	4.88e-05	1	CCCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	61	69	-	11.8202	4.88e-05	1	CCCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	61	69	-	11.8202	4.88e-05	1	CCCATTGTG
Sox17	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	77	85	+	11.8202	4.88e-05	1	CCCATTGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.8793	4.88e-05	0.103	GCCGGAAGCC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.8793	4.88e-05	0.103	GCCGGAAGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	26	39	-	9.63793	4.88e-05	0.0319	GGCCCCACCCACGT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	26	39	-	9.63793	4.88e-05	0.0319	GGCCCCACCCACGT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	26	39	-	9.63793	4.88e-05	0.0319	GGCCCCACCCACGT
SP4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	36	52	-	5	4.88e-05	0.0257	CCCACCCCGCCCCGCCC
SP4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	63	79	+	5	4.88e-05	0.0257	CCCACCCCGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	52	68	-	5	4.88e-05	0.0257	CCCGCCGCGCCCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	52	68	-	5	4.88e-05	0.0257	CCCGCCGCGCCCCCGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	62	71	+	11.8659	4.88e-05	0.158	GCCACATGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	94	103	+	11.8659	4.88e-05	0.158	GCCACATGAC
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	94	103	+	11.8659	4.88e-05	0.158	GCCACATGAC
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	12	25	+	3	4.88e-05	0.48	GGTGTCAAAGGCCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	12	25	+	3	4.88e-05	0.48	GGTGTCAAAGGCCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	12	25	+	3	4.88e-05	0.48	GGTGTCAAAGGCCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	12	25	+	3	4.88e-05	0.48	GGTGTCAAAGGCCG
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	12	25	+	3	4.88e-05	0.48	GGTGTCAAAGGCCG
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	11.9615	4.88e-05	0.273	CCCACGTGCC
BHLHE40	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	-	11.9615	4.88e-05	0.273	TGCACGTGCG
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	11.9615	4.88e-05	0.273	CCCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	11.9615	4.88e-05	0.273	CCCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	11.9615	4.88e-05	0.273	CCCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	11.9615	4.88e-05	0.273	CCCACGTGCC
BHLHE40	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	+	11.9615	4.88e-05	0.273	TGCACGTGCG
GBX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	11.791	4.88e-05	1	GCCAATTAGA
GBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	11.791	4.88e-05	1	GCCAATTAGA
GBX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	11.791	4.88e-05	1	GCCAATTAGA
GBX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	11.791	4.88e-05	1	GCCAATTAGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	44	57	-	6.62245	4.88e-05	0.0719	TGGGGCGACGGGGA
Rarg	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	6	21	+	-0.795918	4.89e-05	0.877	TGATGCAAAAGTTCAA
SP2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	44	58	+	11.1034	4.89e-05	0.012	CACCCGCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	59	73	+	11.1034	4.89e-05	0.012	CTTCCACCCCCTCTG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	59	73	+	11.1034	4.89e-05	0.012	CTTCCACCCCCTCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	60	74	+	11.1034	4.89e-05	0.012	GCTCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	60	74	+	11.1034	4.89e-05	0.012	GCTCTGCCCCGCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	60	74	+	11.1034	4.89e-05	0.012	GCTCTGCCCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	67	81	+	11.1034	4.89e-05	0.012	TCTCCGCCTTCCCAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	67	81	+	11.1034	4.89e-05	0.012	TCTCCGCCTTCCCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	93	107	+	11.1034	4.89e-05	0.012	TCTCCTCCTCCTGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	93	107	+	11.1034	4.89e-05	0.012	TCTCCTCCTCCTGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	93	107	+	11.1034	4.89e-05	0.012	TCTCCTCCTCCTGCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	93	107	+	11.1034	4.89e-05	0.012	TCTCCTCCTCCTGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	5	19	-	11.1034	4.89e-05	0.012	CCCCCACCCCGCCGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	5	19	-	11.1034	4.89e-05	0.012	CCCCCACCCCGCCGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	5	19	-	11.1034	4.89e-05	0.012	CCCCCACCCCGCCGA
SP2	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	31	45	-	11.1034	4.89e-05	0.012	TCCCCTCCTTCCAGC
SP2	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	43	57	-	11.1034	4.89e-05	0.012	TCTCCTCCTTCTCCC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	56	70	-	11.0182	4.89e-05	0.312	TATTAGGGAAAGTTA
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	56	70	-	11.0182	4.89e-05	0.312	TATTAGGGAAAGTTA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	22	32	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	22	32	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	22	32	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	22	32	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	22	32	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	42	52	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	42	52	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	48	58	+	11.5455	4.89e-05	0.0469	CACCACTCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	52	62	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	59	69	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	59	69	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	59	69	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	59	69	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	68	78	+	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	10	20	-	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	70	80	-	11.5455	4.89e-05	0.0469	CACCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	70	80	-	11.5455	4.89e-05	0.0469	CACCCCACCCC
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	83	97	+	11.7333	4.89e-05	0.991	TACTCTCAGCACAAT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	83	97	+	11.7333	4.89e-05	0.991	TACTCTCAGCACAAT
Znf423	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	23	37	-	6.85393	4.89e-05	0.266	AGAGCCCTAGGTTTC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	70	84	+	6.85393	4.89e-05	0.266	AGAGCCCTAGGTTTC
Arntl	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	51	60	-	11.7705	4.89e-05	0.23	GGTCACGCGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	1	20	-	4.77064	4.89e-05	0.0561	ACCCCCCCCCCAGCCCCCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	1	20	-	4.77064	4.89e-05	0.0561	ACCCCCCCCCCAGCCCCCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	34	53	-	4.77064	4.89e-05	0.0561	CCACCTGCCACCCGCCGCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	34	53	-	4.77064	4.89e-05	0.0561	CCACCTGCCACCCGCCGCCT
RREB1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	51	70	-	4.77064	4.89e-05	0.0561	GCACAAAACCACAGCCACCA
KLF16	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	38	+	11.1379	4.89e-05	0.0185	TTCCCGCCCCC
Myog	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	23	33	-	12.4286	4.89e-05	0.145	AACAGGTGGTG
Myog	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	94	104	+	12.4286	4.89e-05	0.145	GACAGCTGAAT
USF2	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	29	39	-	11.9388	4.89e-05	0.135	ATCACGTGAGC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	13	+	11.9388	4.89e-05	0.135	GGCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	13	+	11.9388	4.89e-05	0.135	GGCACGTGCCC
USF2	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	76	86	+	11.9388	4.89e-05	0.135	ATCACGTGAGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	30	44	-	8.97143	4.89e-05	0.106	GCCCCCCCCCCTCGC
EGR3	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	10	24	-	7.41379	4.89e-05	0.0381	CCCCGCCTCCTCAGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	24	38	-	7.41379	4.89e-05	0.0381	CCCCGCCCCCGGAGG
EGR3	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	36	50	-	7.41379	4.89e-05	0.0381	GCCCGCCGCCGCCTC
EGR3	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	65	79	+	7.41379	4.89e-05	0.0381	GCCCGCCGCCGCCTC
EGR3	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	91	105	+	7.41379	4.89e-05	0.0381	CCCCGCCTCCTCAGC
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	17	27	+	8.4	4.89e-05	0.862	TTGAAGGTGGT
Esrra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	17	27	+	8.4	4.89e-05	0.862	TTGAAGGTGGT
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.1.0	17	27	+	8.4	4.89e-05	0.862	TTGAAGGTGGT
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.0.0	17	27	+	8.4	4.89e-05	0.862	TTGAAGGTGGT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	9	23	+	9.18033	4.89e-05	0.0587	GACCATGCCCCGCCC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.6286	4.89e-05	0.0932	ACCGGAAGGC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.6286	4.89e-05	0.0932	ACCGGAAGGC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.6286	4.89e-05	0.0932	ACCGGAAGGC
ERF	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.6286	4.89e-05	0.0932	ACAGGAAGTT
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	85	-	9.42424	4.89e-05	0.343	CAGGGCAAAGTCCA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	85	-	9.42424	4.89e-05	0.343	CAGGGCAAAGTCCA
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	10.2909	4.89e-05	0.235	CCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	10.2909	4.89e-05	0.235	CCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	10.2909	4.89e-05	0.235	CCCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	10.2909	4.89e-05	0.235	CCCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	10.2909	4.89e-05	0.235	CCCACGTGAC
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	37	48	+	11.5663	4.89e-05	1	TCATGCTAATTC
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	37	48	+	11.5663	4.89e-05	1	TCATGCTAATTC
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	46	57	-	11.5663	4.89e-05	1	TCATGCTAATTC
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	46	57	-	11.5663	4.89e-05	1	TCATGCTAATTC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	85	102	+	-11.9868	4.89e-05	0.0442	AGGAGGGAGGGAGGGTGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	13	30	-	-11.9868	4.89e-05	0.0442	AGGAGGGAGGGAGGGTGG
PAX5	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	88	106	+	11.1129	4.89e-05	0.147	CTGAGTAACGGGGCGGGCC
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	21	37	+	-1.01515	4.89e-05	0.836	CGGTCATCCGGAAGTTA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	21	37	+	-1.01515	4.89e-05	0.836	CGGTCATCCGGAAGTTA
Hnf4a	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	62	77	+	4.29091	4.9e-05	0.407	GGGGGCGGAGTCTGCG
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	62	77	+	4.29091	4.9e-05	0.407	GGGGGCGGAGTCTGCG
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	5	21	+	1.12121	4.9e-05	0.514	CAGGTCGGCGGGAGCCT
ESR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	5	21	+	1.12121	4.9e-05	0.514	CAGGTCGGCGGGAGCCT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	40	60	+	9.75806	4.9e-05	0.174	TTTTCTTTTCTTTTTTTTCTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	48	68	+	9.75806	4.9e-05	0.174	TACTAGTTTTTTTTTTTTTGT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	44	62	+	9.44262	4.9e-05	0.118	ACGCCGCCAGAGGGGGGAG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	44	62	+	9.44262	4.9e-05	0.118	ACGCCGCCAGAGGGGGGAG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	23	36	-	9.03279	4.9e-05	0.185	CCCCCCCCGCCGGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	23	36	-	9.03279	4.9e-05	0.185	CCCCCCCCGCCGGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	23	36	-	9.03279	4.9e-05	0.185	CCCCCCCCGCCGGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	23	36	-	9.03279	4.9e-05	0.185	CCCCCCCCGCCGGC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	61	74	-	9.03279	4.9e-05	0.185	CGCCCCCTGCTTTG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	25	37	+	11.2245	4.9e-05	0.303	AGGCTGATGCAAT
JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	25	37	+	11.2245	4.9e-05	0.303	AGGCTGATGCAAT
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	25	37	+	11.2245	4.9e-05	0.303	AGGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	25	37	+	11.2245	4.9e-05	0.303	AGGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	76	88	-	11.2245	4.9e-05	0.303	GAGATGATGAAAC
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	76	88	-	11.2245	4.9e-05	0.303	GAGATGATGAAAC
ELF4	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	53	64	+	9.95082	4.9e-05	0.1	GAGGCGGAAGTC
ELF4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	69	80	+	9.95082	4.9e-05	0.1	GAGGCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	41	-	9.95082	4.9e-05	0.1	ATGCCGGAAATG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	41	-	9.95082	4.9e-05	0.1	ATGCCGGAAATG
ELF4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	46	-	9.95082	4.9e-05	0.1	GAGGCGGAAGTC
ELF4	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	62	-	9.95082	4.9e-05	0.1	GAGGCGGAAGTC
SP3	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	6	16	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	13	23	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	13	23	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	13	23	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	13	23	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	49	59	+	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	26	36	-	11.4878	4.9e-05	0.0194	GCCACCCCCAT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	26	36	-	11.4878	4.9e-05	0.0194	GCCACCCCCAT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	26	36	-	11.4878	4.9e-05	0.0194	GCCACCCCCAT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	26	36	-	11.4878	4.9e-05	0.0194	GCCACCCCCAT
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	70	80	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	99	109	-	11.4878	4.9e-05	0.0194	GGCACACCCAC
Creb3l2	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	44	52	+	12.3933	4.9e-05	0.21	GCCACGTCA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	61	69	-	12.3933	4.9e-05	0.21	GCCACGTCA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	89	97	+	12.3933	4.9e-05	0.21	GCCACGTCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	41	60	+	4.76147	4.9e-05	0.0561	CGGCCACACACACACACACA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	41	54	-	6.61224	4.9e-05	0.0719	GCGGCCCGCGGGGG
MAX::MYC	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	13	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	33	+	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	44	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	44	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	64	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	64	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	77	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	77	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	92	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	97	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	97	-	11.2041	4.9e-05	0.285	GGGCACGTGAC
MAX::MYC	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	112	+	11.2041	4.9e-05	0.285	GGGCACGTGAC
Nr2f6(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	98	112	+	-4.01429	4.9e-05	0.913	AGGGTTGGAAGGTCG
GLI2	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	44	55	+	11.0172	4.9e-05	0.33	CAGACCACAATG
GLI2	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	60	71	-	11.0172	4.9e-05	0.33	CAGACCACAATG
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	16	27	-	11.3816	4.9e-05	0.0301	CCCCCACCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	22	33	-	11.3816	4.9e-05	0.0301	CCCCCACCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	28	39	-	11.3816	4.9e-05	0.0301	CCCCCACCCCCA
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	32	43	-	11.3816	4.9e-05	0.0301	CCCCCGCCCAAC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	34	45	-	11.3816	4.9e-05	0.0301	CCCCCACCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	40	51	-	11.3816	4.9e-05	0.0301	CCCCCACCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	56	67	-	11.3816	4.9e-05	0.0301	TCCACACCCCCA
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	71	82	+	11.3816	4.9e-05	0.0301	CCCCCGCCCAAC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	68	79	-	11.3816	4.9e-05	0.0301	TCCACACCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	68	79	-	11.3816	4.9e-05	0.0301	TCCACACCCCCA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	36	46	-	11.8077	4.9e-05	0.0744	AGCCCGAGGGA
BHLHE41	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	8.90385	4.9e-05	0.165	ACCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	8.90385	4.9e-05	0.165	ACCACGTGAC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	68	79	+	11.7455	4.9e-05	0.055	CGCCCCGAGCCC
ZBTB18	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	78	90	-	10.4714	4.91e-05	0.729	CTCCCAGCTGTGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	15	35	-	10.2653	4.91e-05	0.0165	GGGGGAGGGGAGGCCAAAGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	62	82	-	10.2653	4.91e-05	0.0165	AAGGAAGCCGGGAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	62	82	-	10.2653	4.91e-05	0.0165	AAGGAAGCCGGGAGGGAGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	77	97	-	10.2653	4.91e-05	0.0165	AGAGAAGAGATTGGTGGAAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	79	99	-	10.2653	4.91e-05	0.0165	TGTGAAGGAAAGAAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	79	99	-	10.2653	4.91e-05	0.0165	TGTGAAGGAAAGAAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	79	99	-	10.2653	4.91e-05	0.0165	TGTGAAGGAAAGAAAGGAGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	79	99	-	10.2653	4.91e-05	0.0165	TGTGAAGGAAAGAAAGGAGCA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	79	99	-	10.2653	4.91e-05	0.0165	TGTGAAGGAAAGAAAGGAGCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	2	22	+	10.2653	4.91e-05	0.0165	GGAGGGGAGGGGAGGATGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	18	38	+	10.2653	4.91e-05	0.0165	AGAGAAGAGATTGGTGGAAGA
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	23	33	-	11.6327	4.91e-05	0.176	TGCACGTGATC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	6	18	+	11.082	4.91e-05	0.0586	GGCCGTTAGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	68	80	+	11.082	4.91e-05	0.0586	GCCCCCCTGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	68	80	+	11.082	4.91e-05	0.0586	GCCCCCCTGGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	97	109	-	11.082	4.91e-05	0.0586	GGCCGTTAGGGCG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	25	35	+	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	66	76	+	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	66	76	+	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	5	15	-	11.8163	4.91e-05	0.198	TGCTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	5	15	-	11.8163	4.91e-05	0.198	TGCTGACTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	8	18	-	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	8	18	-	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	36	46	-	11.8163	4.91e-05	0.198	GCGTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	36	46	-	11.8163	4.91e-05	0.198	GCGTGAGTCAC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	37	51	-	10.9636	4.91e-05	0.109	GGAACCCTGTGGTGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	64	78	-	10.9636	4.91e-05	0.109	GGCCGCCTGTAGAGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	64	78	-	10.9636	4.91e-05	0.109	GGCCGCCTGTAGAGG
JUND	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	+	11.4468	4.91e-05	0.203	TATGAGTCACA
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	104	114	+	8.38182	4.91e-05	0.862	GTGAAGGTCGC
HEY1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	11.9091	4.91e-05	0.146	CCCACGTGAC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	11.9091	4.91e-05	0.146	CCCACGTGAC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	11.9091	4.91e-05	0.146	CCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	11.9091	4.91e-05	0.146	CCCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	11.9091	4.91e-05	0.146	CCCACGTGAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	10	26	+	4.98182	4.91e-05	0.0258	AGGCCCCCGCCCCCGTC
SP4	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	19	35	-	4.98182	4.91e-05	0.0258	GCAGCCCCTCCCTCCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	56	72	-	4.98182	4.91e-05	0.0258	GCGGCCCCGCGCCCGCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	56	72	-	4.98182	4.91e-05	0.0258	GCGGCCCCGCGCCCGCT
Znf423	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	6	20	-	6.8427	4.91e-05	0.266	GGCACTCTTGGGGCC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	91	105	+	6.8427	4.91e-05	0.266	GGCACTCTTGGGGCC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	90	107	+	-12	4.91e-05	0.0443	GTGGAGGAGGAAGGAGGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	96	113	+	-12	4.91e-05	0.0443	GGAGGGTTGGAAGGTCGG
RFX5	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	68	83	+	7.55172	4.91e-05	0.272	TGTTGCCCTAGCGCCC
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	20	28	+	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	79	87	+	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	21	29	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	28	36	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	28	36	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	28	36	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	33	41	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	33	41	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	33	41	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	46	54	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	78	86	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	78	86	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	78	86	-	11.8269	4.91e-05	0.442	CAACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	78	86	-	11.8269	4.91e-05	0.442	CAACCACAA
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	8	26	+	11.1774	4.91e-05	0.671	TGGCCCCGGGTGAAATGAG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	8	26	+	11.1774	4.91e-05	0.671	TGGCCCCGGGTGAAATGAG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	14	25	+	9.94545	4.91e-05	0.109	AAACAGGAAATG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	27	-	9.94545	4.91e-05	0.109	AAACAGGAAATG
FEV	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.9615	4.91e-05	0.123	ACCGGAAGGT
FEV	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
FEV	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.9615	4.91e-05	0.123	CCCGGAAGTC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	85	100	+	10.8545	4.91e-05	0.0389	CCCCGCCCGCTCACCC
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	34	46	-	11.898	4.91e-05	0.427	GGGAGGTCAGGCG
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	9	22	+	11.5	4.91e-05	0.054	AGCCGTGCGGCCTG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	55	69	+	10.3333	4.91e-05	0.298	AAAGTTTTCTTTTTC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	66	80	+	10.3333	4.91e-05	0.298	CTACTTTCTTTTTAC
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	30	44	-	10.3333	4.91e-05	0.298	TAAGTTCCCTTTTCA
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	57	71	-	10.3333	4.91e-05	0.298	CTACTTTCTTTTTAC
Hoxd3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	15	30	-	11.6234	4.91e-05	1	CAGCCTTAATTACTCT
Hoxd3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	15	30	-	11.6234	4.91e-05	1	CAGCCTTAATTACACT
Mecom	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	99	112	+	9.39326	4.91e-05	1	AAGAGAAGACAACA
GATA1::TAL1	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	27	44	+	11.4727	4.91e-05	0.915	CCAATCTTAAAGAAGCAG
GATA1::TAL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	58	75	+	11.4727	4.91e-05	0.915	CCAATCTTAAAGAAGCAG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	58	75	+	11.4727	4.91e-05	0.915	CCAATCTTAAAGAAGCAG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	48	62	+	11.3243	4.91e-05	0.178	CGGGGACAGAGGGGC
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	48	62	+	11.3243	4.91e-05	0.178	CGGGGACAGAGGGGC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	48	62	+	11.3243	4.91e-05	0.178	CGGGGACAGAGGGGC
RREB1	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	22	41	-	4.75229	4.92e-05	0.0561	AAAAACACCAACAACAACAA
RREB1	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	61	80	-	4.75229	4.92e-05	0.0561	CCCTCCCCCTCCACACACCC
RREB1	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	35	54	+	4.75229	4.92e-05	0.0561	CCCTCCCCCTCCACACACCC
RREB1	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	74	93	+	4.75229	4.92e-05	0.0561	AAAAACACCAACAACAACAA
SPIC	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	84	97	+	11.3944	4.92e-05	0.241	CGGAAGCGGAAGTG
SPIC	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	18	31	-	11.3944	4.92e-05	0.241	CGGAAGCGGAAGTG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	12	22	-	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	12	22	-	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	44	54	-	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	44	54	-	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	84	94	-	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	7	17	+	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	7	17	+	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	21	31	+	11.8909	4.92e-05	0.0583	GGTCTTCCGGC
ELK4	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	22	32	+	11.8909	4.92e-05	0.0583	TTATTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	30	40	+	11.8909	4.92e-05	0.0583	TCATTTCCGGA
ELK4	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	52	62	+	11.8909	4.92e-05	0.0583	TCATTTCCGGA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	75	84	-	11.2385	4.92e-05	0.0548	TCCCCCCCCA
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	62	76	-	8.95714	4.92e-05	0.106	CAACTCCCACCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	62	76	-	8.95714	4.92e-05	0.106	CAACTCCCACCGCGC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	3	16	-	6.60204	4.92e-05	0.0719	TGGGACCAAGGGGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	8	22	+	7.39655	4.92e-05	0.0381	CCCCCCCCCCACAGT
INSM1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	96	107	-	10.8061	4.92e-05	0.171	TGTTTGGGGCTA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	29	38	+	10.0242	4.92e-05	0.0455	CTCACGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	31	40	+	10.0242	4.92e-05	0.0455	GTCACGCGCG
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	29	38	-	10.0242	4.92e-05	0.0455	GGCGCGTGAG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	31	40	-	10.0242	4.92e-05	0.0455	CGCGCGTGAC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	50	59	+	10.0242	4.92e-05	0.0455	CGCGCGTGAC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	50	59	-	10.0242	4.92e-05	0.0455	GTCACGCGCG
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	77	86	+	10.0242	4.92e-05	0.0455	GGCGCGTGAG
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	77	86	-	10.0242	4.92e-05	0.0455	CTCACGCGCC
HINFP	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	8	19	+	11.3485	4.92e-05	0.109	GGGGGTCCGCCC
HINFP	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	36	47	-	11.3485	4.92e-05	0.109	GGGGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	64	75	+	11.3485	4.92e-05	0.109	GAGCGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	64	75	+	11.3485	4.92e-05	0.109	GAGCGTCCCCCG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	68	79	+	11.3485	4.92e-05	0.109	GGGGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	68	79	+	11.3485	4.92e-05	0.109	GGGGGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.0	92	103	-	11.3485	4.92e-05	0.109	GAACGTGCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.1	92	103	-	11.3485	4.92e-05	0.109	GAACGTGCGCGT
TP53	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	25	42	-	7.42857	4.92e-05	0.979	GACTTGCAGAGGCAGGCC
TP53	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.0.0	25	42	-	7.42857	4.92e-05	0.979	GACTTGCAGAGGCAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	-	10.7931	4.92e-05	0.0554	CGCCTTAAAGGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	85	-	10.7931	4.92e-05	0.0554	CCCCCCGCCGGCA
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	28	38	-	12.4082	4.92e-05	0.145	CACAGCTGGGT
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	28	38	-	12.4082	4.92e-05	0.145	CACAGCTGGGT
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	79	89	+	12.4082	4.92e-05	0.145	CACAGCTGGGT
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	79	89	+	12.4082	4.92e-05	0.145	CACAGCTGGGT
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	9	19	-	11.1636	4.92e-05	0.334	CTTCTGAGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	9	19	-	11.1636	4.92e-05	0.334	CTTCTGAGAAA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	9	19	-	11.1636	4.92e-05	0.334	CTTCTGAGAAA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	9	19	-	11.1636	4.92e-05	0.334	CTTCTGAGAAA
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	9	19	-	11.1636	4.92e-05	0.334	CTTCTGAGAAA
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	74	84	-	11.1636	4.92e-05	0.334	CTGCTGGGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	74	84	-	11.1636	4.92e-05	0.334	CTGCTGGGAAA
Tcf21	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	85	98	+	7.42105	4.92e-05	0.56	CCTACAGCTGCCGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	67	81	+	9.16393	4.92e-05	0.0589	CACCACGCTCATTAA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	67	81	+	9.16393	4.92e-05	0.0589	CACCACGCTCATTAA
EGR1	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	12	25	+	10.9423	4.92e-05	0.0208	TCAACACCCACTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	13	26	-	10.9423	4.92e-05	0.0208	GTCCAGCCCCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	25	38	-	10.9423	4.92e-05	0.0208	GCGCCGCCCTCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	25	38	-	10.9423	4.92e-05	0.0208	GCGCCGCCCTCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	25	38	-	10.9423	4.92e-05	0.0208	GCGCCGCCCTCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	66	79	+	10.9423	4.92e-05	0.0208	CCGCCACCCCTTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	66	79	+	10.9423	4.92e-05	0.0208	CCGCCACCCCTTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	66	79	+	10.9423	4.92e-05	0.0208	CCGCCACCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	66	79	+	10.9423	4.92e-05	0.0208	CCGCCACCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	63	76	-	10.9423	4.92e-05	0.0208	TCAACACCCACTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	63	76	-	10.9423	4.92e-05	0.0208	TCAACACCCACTCC
GLIS2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	13	26	-	9.01639	4.92e-05	0.185	CCCCCCCCGCAGTA
GLIS2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	89	102	+	9.01639	4.92e-05	0.185	CCCCCCCCGCAGTA
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.0	22	36	+	11.3654	4.93e-05	0.154	GAATGGACCAATGGT
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	22	36	+	11.3654	4.93e-05	0.154	GAATGGACCAATGGT
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	9	23	-	8.27632	4.93e-05	0.224	TGGCTGACTCGCCAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	92	106	+	8.27632	4.93e-05	0.224	TGGCTGACTCGCCAC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	92	106	+	8.27632	4.93e-05	0.224	TGGCTGACTCGCCAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	11	24	-	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	89	102	+	9.93443	4.93e-05	0.365	AGTCCTCAGGGAGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	1	15	+	11.0862	4.93e-05	0.012	GCCCTTCCCTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	1	15	+	11.0862	4.93e-05	0.012	GCCCTTCCCTCCCGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	11	25	+	11.0862	4.93e-05	0.012	GCTCCGCCCAGGACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	11	25	+	11.0862	4.93e-05	0.012	GCTCCGCCCAGGACC
SP2	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	33	47	+	11.0862	4.93e-05	0.012	GGACCGCCCACGTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	48	+	11.0862	4.93e-05	0.012	CCCCCTCCCTCAGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	49	63	+	11.0862	4.93e-05	0.012	GCCCTTCCCTCCCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	10	24	-	11.0862	4.93e-05	0.012	CTCCCACCCCACTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	30	44	-	11.0862	4.93e-05	0.012	GCCGCGCCTCCTGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	30	44	-	11.0862	4.93e-05	0.012	GCCGCGCCTCCTGCT
SP2	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	31	45	-	11.0862	4.93e-05	0.012	GCACCGCCTACGCGG
SP2	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	52	66	-	11.0862	4.93e-05	0.012	GCCCTTCCCTCCCGC
SP2	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	81	95	-	11.0862	4.93e-05	0.012	GCCCTGCCTCTGTCT
SP2	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	100	114	-	11.0862	4.93e-05	0.012	GCCCTTCCCTCCCGC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	-	11.7091	4.93e-05	0.0702	CCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	-	11.7091	4.93e-05	0.0702	CCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	-	11.7091	4.93e-05	0.0702	GGCCGGAGGCG
ELF3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	34	46	-	9.15517	4.93e-05	0.147	GAGGCGGAAGTCC
ELF3	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	53	65	+	9.15517	4.93e-05	0.147	GAGGCGGAAGTCC
ELF3	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	50	62	-	9.15517	4.93e-05	0.147	GAGGCGGAAGTCC
ELF3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	69	81	+	9.15517	4.93e-05	0.147	GAGGCGGAAGTCC
E2F1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	3	14	-	11.5574	4.93e-05	0.41	TGGGGCGCCATG
E2F1	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	52	63	+	11.5574	4.93e-05	0.41	GTCGGCGCCCAA
E2F1	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	52	63	-	11.5574	4.93e-05	0.41	GTCGGCGCCCAA
E2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	101	112	+	11.5574	4.93e-05	0.41	TGGGGCGCCATG
E2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	101	112	+	11.5574	4.93e-05	0.41	TGGGGCGCCATG
MAX::MYC	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	13	23	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	26	36	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	34	44	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	44	54	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	44	54	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	47	57	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	47	57	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	47	57	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	47	57	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	47	57	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	52	-	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	59	-	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	63	73	+	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	71	-	11.1939	4.93e-05	0.285	GGCCACGTGAC
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	89	-	11.1939	4.93e-05	0.285	GGCCACGTGAC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	10	29	-	4.74312	4.93e-05	0.0561	CCACACCTCCGCCCCACACC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	10	29	-	4.74312	4.93e-05	0.0561	CCACACCTCCGCCCCACACC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	10	29	-	4.74312	4.93e-05	0.0561	CCACACCTCCGCCCCACACC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	10	29	-	4.74312	4.93e-05	0.0561	CCACACCTCCGCCCCACACC
Mafb	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	40	51	-	11.7303	4.93e-05	0.865	GATTTGCTGAGG
Mafb	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	40	51	+	11.7303	4.93e-05	0.865	GATTTGCTGAGG
T	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	58	-	8.73077	4.93e-05	1	CGGCGACTAGGTGTGA
T	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	57	72	+	8.73077	4.93e-05	1	CGGCGACTAGGTGTGA
T	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	57	72	+	8.73077	4.93e-05	1	CGGCGACTAGGTGTGA
T	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	57	72	+	8.73077	4.93e-05	1	CGGCGACTAGGTGTGA
T	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	57	72	+	8.73077	4.93e-05	1	CGGCGACTAGGTGTGA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	57	73	+	1.09091	4.93e-05	0.514	GAGGGCACGTTGAGCGT
ESR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	57	73	+	1.09091	4.93e-05	0.514	GAGGGCACGTTGAGCGT
EHF	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	51	62	+	10.918	4.93e-05	0.125	GGCCAGGAAGTA
EHF	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	53	64	-	10.918	4.93e-05	0.125	GGCCAGGAAGTA
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	67	-	10.918	4.93e-05	0.125	GCGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	67	-	10.918	4.93e-05	0.125	GCGCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	67	-	10.918	4.93e-05	0.125	GCGCCGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	67	-	10.918	4.93e-05	0.125	GCGCCGGAAGTG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	35	48	+	11.8654	4.93e-05	0.22	GGACCATGACTCAC
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	50	63	+	11.8654	4.93e-05	0.22	TCTGAGTGAGTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	30	43	-	11.8654	4.93e-05	0.22	GGACCATGACTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	30	43	-	11.8654	4.93e-05	0.22	GGACCATGACTCAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	12	28	+	4.96364	4.93e-05	0.0259	GTTCCCCCGCCCCTCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	12	28	+	4.96364	4.93e-05	0.0259	GTTCCCCCGCCCCTCCG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	41	55	-	11	4.93e-05	0.312	TTTAAGTGAAAGGCA
CEBPG	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	42	51	-	10.9184	4.93e-05	0.806	GTGACGCAAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	11.9231	4.93e-05	0.273	GCCACGTGCC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	11.9231	4.93e-05	0.273	GCCACGTGCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	11	21	-	11.6154	4.94e-05	0.0139	CCCCCACCCAT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	42	52	+	11.6154	4.94e-05	0.0139	ACCCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	42	52	+	11.6154	4.94e-05	0.0139	ACCCCTCCCTT
SP1	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	63	73	-	11.6154	4.94e-05	0.0139	ACCCCTCCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	28	37	-	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	28	37	-	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	35	44	-	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	20	29	+	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	20	29	+	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	22	31	+	11.7755	4.94e-05	0.0195	ACCACGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	71	80	+	11.7755	4.94e-05	0.0195	ACCACGCCCA
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	58	72	-	11.0081	4.94e-05	1	CCCTGTGATGCTAAT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	12	25	-	6.59184	4.94e-05	0.0719	GGGGCGGAGGGAGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	83	96	-	6.59184	4.94e-05	0.0719	GGGGCACAAGGAGG
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	-	11.8545	4.94e-05	0.0521	CGCCGGCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	+	11.8545	4.94e-05	0.0521	CGCCGGCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	+	11.8545	4.94e-05	0.0521	CGCCGGCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	+	11.8545	4.94e-05	0.0521	CGCCGGCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	+	11.8545	4.94e-05	0.0521	CGCCGGCGGCT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	17	27	+	11.2295	4.94e-05	0.153	CAGCGGAAGTG
ETV2	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	26	36	+	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	16	26	-	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	41	51	-	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	41	51	-	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	65	75	+	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	79	89	-	11.2295	4.94e-05	0.153	AGCCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	79	89	-	11.2295	4.94e-05	0.153	AGCCGGAAGTG
NFKB2	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	52	64	+	9.18182	4.94e-05	0.258	CCGGGGATCCCCG
NFKB2	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	53	65	-	9.18182	4.94e-05	0.258	CCGGGGATCCCCG
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	12.4545	4.94e-05	0.295	GCCACGTGAT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	12.4545	4.94e-05	0.295	GCCACGTGAT
MNT	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	12.4545	4.94e-05	0.295	CGCACGTGAC
MNT	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	12.4545	4.94e-05	0.295	GCCACGTGAT
MNT	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	12.4545	4.94e-05	0.295	CGCACGTGAC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	99	112	-	7.29787	4.94e-05	0.0994	TGCCACCCGCAGCC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	-	6.61224	4.94e-05	0.282	CATGAGTCAGC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	+	6.61224	4.94e-05	0.282	CATGAGTCAGC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	82	92	+	6.61224	4.94e-05	0.282	GACGACTCATG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	-	11.0656	4.94e-05	0.0586	TCCCTCGCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	-	11.0656	4.94e-05	0.0586	ACCCCCCCGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	+	11.0656	4.94e-05	0.0586	GCCCTTGGGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	+	11.0656	4.94e-05	0.0586	GCCCTTGGGGGCT
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	71	81	-	11.9483	4.94e-05	0.0589	ACGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	71	81	-	11.9483	4.94e-05	0.0589	ACGAGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	71	81	-	11.9483	4.94e-05	0.0589	ACGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	71	81	-	11.9483	4.94e-05	0.0589	ACGAGGGAGGG
E2F6	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	34	44	+	11.9483	4.94e-05	0.0589	ACGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	96	106	+	11.9483	4.94e-05	0.0589	GCGCGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	96	106	+	11.9483	4.94e-05	0.0589	GCGCGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	96	106	+	11.9483	4.94e-05	0.0589	GCGCGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	96	106	+	11.9483	4.94e-05	0.0589	GCGCGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	96	106	+	11.9483	4.94e-05	0.0589	GCGCGGGAGCT
Hes2	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	94	106	+	11.0635	4.94e-05	0.498	TCTGGGAACGTGA
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	55	64	+	11.6182	4.94e-05	0.655	ACCAGCTGAA
Hmx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	48	64	-	11.3537	4.94e-05	1	GCAAGCAAATAAATACT
Hmx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	48	64	-	11.3537	4.94e-05	1	GCAAGCAAATAAATACT
Hmx3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	48	64	-	11.3537	4.94e-05	1	GCAAGCAAATAAATACT
Hmx3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	48	64	-	11.3537	4.94e-05	1	GCAAGCAAATAAATACT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	14	23	+	11.7069	4.94e-05	0.112	GCCGGAACTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	14	23	+	11.7069	4.94e-05	0.112	GCCGGAACTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	14	23	+	11.7069	4.94e-05	0.112	GCCGGAACTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	14	23	+	11.7069	4.94e-05	0.112	GCCGGAACTG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	85	94	+	11.7069	4.94e-05	0.112	GCCGGAACTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK3	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.7069	4.94e-05	0.112	CCCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	10.8936	4.94e-05	0.0859	TCCGGAAGCT
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	28	39	+	7.77551	4.94e-05	0.169	AGTGACATCACA
EGR3	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	13	27	-	7.37931	4.94e-05	0.0381	GGCCGCTCCCGCGAA
ZBTB7A	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	14	25	-	11.4286	4.94e-05	0.217	GGCGCCCCCCTC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	43	54	-	11.4286	4.94e-05	0.217	CGCGTCCACCCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	68	79	-	11.4286	4.94e-05	0.217	GGCGCCCCCCTC
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	90	101	+	11.4286	4.94e-05	0.217	GGCGCCCCCCTC
YY1	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	76	87	-	11.2885	4.95e-05	0.245	CAAAATGGAGAA
YY1	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	28	39	+	11.2885	4.95e-05	0.245	CAAAATGGAGAA
YY2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	73	83	+	11.7576	4.95e-05	0.305	CCCCGCCATCT
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	60	75	+	4.25455	4.95e-05	0.407	AAAGTCAAAGTTTGAT
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	60	75	+	4.25455	4.95e-05	0.407	AAAGTCAAAGTTTGAT
Hnf4a	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	90	105	+	4.25455	4.95e-05	0.407	GGAACCAAAGTCCAGA
Hnf4a	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	90	105	+	4.25455	4.95e-05	0.407	GGAACCAAAGTCCAGA
Hnf4a	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	10	25	-	4.25455	4.95e-05	0.407	GGAACCAAAGTCCAGA
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	34	49	-	4.25455	4.95e-05	0.407	AAAGTCAAAGTTTGAT
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	34	49	-	4.25455	4.95e-05	0.407	AAAGTCAAAGTTTGAT
IRF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	45	58	-	9.46774	4.95e-05	0.701	CCGAAAGGGAAAGG
IRF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	79	92	-	9.46774	4.95e-05	0.701	CCGAAAGGGAAAGG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	59	72	-	7.40789	4.95e-05	0.56	GCAACAGCTGATCG
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	59	72	-	7.40789	4.95e-05	0.56	GCAACAGCTGATCG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	74	91	+	9.92683	4.95e-05	0.15	AGACCTGGCATTGGCGCA
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	76	87	-	4.18033	4.95e-05	0.598	TGACATCTGAAA
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	76	87	-	4.18033	4.95e-05	0.598	TGACATCTGAAA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	84	95	-	4.18033	4.95e-05	0.598	TCACGGCTGTCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	84	95	-	4.18033	4.95e-05	0.598	TCACGGCTGTCA
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	82	94	+	7.80328	4.95e-05	0.89	TTGCAACCGGTTT
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	82	94	+	7.80328	4.95e-05	0.89	TTGCAACCGGTTT
XBP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	63	76	+	10.5	4.95e-05	0.508	TTGGCGACGTCAGA
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	83	96	+	10.5	4.95e-05	0.508	TTGGCGACGTCAGA
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	83	96	+	10.5	4.95e-05	0.508	TTGGCGACGTCAGA
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	83	96	+	10.5	4.95e-05	0.508	TTGGCGACGTCAGA
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	83	96	+	10.5	4.95e-05	0.508	TTGGCGACGTCAGA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	33	47	-	10.4545	4.95e-05	0.299	CCAAGTGAGTCAGGA
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	34	48	-	10.4545	4.95e-05	0.299	CCAAGTGAGTCAGGA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	67	81	+	10.4545	4.95e-05	0.299	CCAAGTGAGTCAGGA
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	68	82	+	10.4545	4.95e-05	0.299	CCAAGTGAGTCAGGA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	15	25	-	11.6724	4.95e-05	0.0469	TGGCGGGGAGG
E2F4	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	18	28	-	11.6724	4.95e-05	0.0469	CAGCGGGAGGA
E2F4	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	47	57	-	11.6724	4.95e-05	0.0469	TGGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	66	76	-	11.6724	4.95e-05	0.0469	GCGCGCGAGAA
E2F4	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	68	78	-	11.6724	4.95e-05	0.0469	TGGCGGGGAGG
E2F4	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	37	47	+	11.6724	4.95e-05	0.0469	TGGCGGGGAGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	58	68	+	11.6724	4.95e-05	0.0469	TGGCGGGGAGG
E2F4	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	87	97	+	11.6724	4.95e-05	0.0469	CAGCGGGAGGA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	31	45	+	8.26316	4.95e-05	0.224	CATGTGACTCACCAG
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	27	41	-	8.26316	4.95e-05	0.224	CATGTGACTCACCAG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	31	45	-	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	31	45	-	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	31	45	-	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	31	45	-	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	81	95	+	8.26316	4.95e-05	0.224	GTGATGTGGCAGCAG
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	82	96	+	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	82	96	+	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	82	96	+	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	82	96	+	8.26316	4.95e-05	0.224	AGGATGAGTCACCTA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	-	10.7759	4.95e-05	0.0554	TCCCCCAGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	-	10.7759	4.95e-05	0.0554	TCCCCCAGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	+	10.7759	4.95e-05	0.0554	TGCCGCCCGGGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	+	10.7759	4.95e-05	0.0554	TGCCGCCCGGGGT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	+	10.7759	4.95e-05	0.0554	TCCCCTAGCGGCG
ETV4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.7586	4.95e-05	0.126	GCCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.7586	4.95e-05	0.126	GCCGGAAGCT
ELK4	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	55	65	-	11.8727	4.95e-05	0.0583	CTACTTCCTGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	20	30	+	11.8727	4.95e-05	0.0583	CTACTTCCTGG
ELK4	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	50	60	+	11.8727	4.95e-05	0.0583	CTACTTCCTGG
Ascl2	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	-	11.6571	4.95e-05	0.208	CACAGCTGTC
Ascl2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	-	11.6571	4.95e-05	0.208	CACAGCTGTC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	+	11.6571	4.95e-05	0.208	CACAGCTGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	+	11.6571	4.95e-05	0.208	CACAGCTGTC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	-	12.0303	4.95e-05	0.585	AGCACGTGTG
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	-	12.0303	4.95e-05	0.585	AGCACGTGTG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	11	21	+	11.7959	4.95e-05	0.198	CCATGAGTCAG
JUNB	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	51	61	-	11.7959	4.95e-05	0.198	CCATGAGTCAG
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	5	18	+	9.39394	4.95e-05	0.344	GGGGTTAAGGGGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	33	42	+	11.5172	4.95e-05	0.127	CCCACCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	33	42	+	11.5172	4.95e-05	0.127	CCCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	53	62	-	11.5172	4.95e-05	0.127	CCCACCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	53	62	-	11.5172	4.95e-05	0.127	CCCACCTGCG
NHLH1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	73	82	-	11.5172	4.95e-05	0.127	CCCACCTGCG
SOX4	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	8	23	+	-10.9091	4.96e-05	1	CAACCATGCCAGGGCT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	12	26	-	9.14754	4.96e-05	0.0589	TACCCCGCCCCCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	12	26	-	9.14754	4.96e-05	0.0589	TACCCCGCCCCCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	64	78	+	9.14754	4.96e-05	0.0589	TGCCCCGCCCCGCCG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	64	78	+	9.14754	4.96e-05	0.0589	TGCCCCGCCCCGCCG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	64	78	+	9.14754	4.96e-05	0.0589	TGCCCCGCCCCGCCG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	25	39	+	10.9455	4.96e-05	0.109	GGCCGCCCACGGGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	25	39	+	10.9455	4.96e-05	0.109	GGCCGCCCACGGGCC
Sox6	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	53	62	+	12.5286	4.96e-05	0.754	CCTTTGTCTG
Sox6	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	85	94	-	12.5286	4.96e-05	0.754	CCTTTGTCTG
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	37	55	+	11.1613	4.96e-05	0.671	TACCCTGCAGTTCCTTCTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	37	-	10.2449	4.96e-05	0.0166	GGGGCCGGGCCGGGGAGGGGC
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	29	49	-	10.2449	4.96e-05	0.0166	AGAGGGGGGGCGGGAGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	12	32	+	10.2449	4.96e-05	0.0166	GGTGCACAGGGTGGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	12	32	+	10.2449	4.96e-05	0.0166	GGTGCACAGGGTGGGAGGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	48	68	+	10.2449	4.96e-05	0.0166	GGAGACAGGGACGCAGGAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	48	68	+	10.2449	4.96e-05	0.0166	GGTGGTGCAGGGGGTGGGGCC
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	66	86	+	10.2449	4.96e-05	0.0166	AGAGGGGGGGCGGGAGGGCGG
ZNF263	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	78	98	+	10.2449	4.96e-05	0.0166	GGGGCCGGGCCGGGGAGGGGC
ETS1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	11.8621	4.96e-05	0.105	ACCGGAAGGA
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	57	+	6.19149	4.96e-05	0.952	GGGCACGCGGAGTCCCG
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	57	+	6.19149	4.96e-05	0.952	GGGCACGCGGAGTCCCG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	29	45	-	4.94545	4.96e-05	0.026	GAGGCTCCTCCTCCTTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	29	45	-	4.94545	4.96e-05	0.026	GAGGCTCCTCCTCCTTC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	29	40	+	11.3333	4.96e-05	0.109	TCAGGTCCGCCT
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	29	40	+	11.3333	4.96e-05	0.109	TCAGGTCCGCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	25	44	-	4.72477	4.96e-05	0.0563	CCCACCCCCCACCGCCCCGC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	36	49	+	9	4.96e-05	0.185	CGCCCCCCGCACGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	26	35	+	11.449	4.96e-05	0.0206	AGGGAGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	27	36	-	11.449	4.96e-05	0.0206	AGGGAGGGGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	27	36	-	11.449	4.96e-05	0.0206	AGGGAGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	42	51	-	11.449	4.96e-05	0.0206	AGGGAGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	42	51	-	11.449	4.96e-05	0.0206	AGGGAGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	64	73	+	11.449	4.96e-05	0.0206	AGGGAGGGGT
Hmx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	46	62	-	11.4268	4.96e-05	1	CTCCGCACTTAAAGCAT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	83	94	-	11.6129	4.96e-05	0.281	ACCACCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	83	94	-	11.6129	4.96e-05	0.281	ACCACCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	83	94	-	11.6129	4.96e-05	0.281	ACCACCACCGCT
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	83	94	-	11.6129	4.96e-05	0.281	ACCACCACCGCT
SNAI2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	13	21	-	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	102	+	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	102	+	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	102	+	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	102	+	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	89	97	-	11.907	4.96e-05	0.456	CACAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	89	97	-	11.907	4.96e-05	0.456	CACAGGTGC
GATA1::TAL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	49	66	-	11.4545	4.96e-05	0.915	CCTATCTCCCAGTACCAA
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	49	66	-	11.4545	4.96e-05	0.915	CCTATCTCCCAGTACCAA
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	49	66	-	11.4545	4.96e-05	0.915	CCTATCTCCCAGTACCAA
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	26	40	-	11.383	4.96e-05	0.32	CACAGTGACATCATT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	26	40	-	11.383	4.96e-05	0.32	CACAGTGACATCATT
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	26	40	-	11.383	4.96e-05	0.32	CACAGTGACATCATT
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	26	40	-	11.383	4.96e-05	0.32	CACAGTGACATCATT
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	26	40	-	11.383	4.96e-05	0.32	CACAGTGACATCATT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	12	27	-	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	12	27	-	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	12	27	-	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
EGR4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	16	31	-	10.8364	4.96e-05	0.0389	CCCCGCCCCCGGCTCC
EGR4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	34	49	-	10.8364	4.96e-05	0.0389	CGCCGCCCAGGCCTAC
EGR4	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	54	69	+	10.8364	4.96e-05	0.0389	ACACACCCACCCGCCC
EGR4	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	46	61	-	10.8364	4.96e-05	0.0389	ACACACCCACCCGCCC
EGR4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	66	81	+	10.8364	4.96e-05	0.0389	CGCCGCCCAGGCCTAC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	86	101	+	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	86	101	+	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	86	101	+	10.8364	4.96e-05	0.0389	CGCCGCCCACTCCAAA
ESRRB	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	53	63	-	9.31034	4.96e-05	1	TCAAGCTCAAA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	+	11.6429	4.96e-05	0.0857	GGCCCCAGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	+	11.6429	4.96e-05	0.0857	GGCCCCAGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	-	11.6429	4.96e-05	0.0857	GGCCCCAGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	-	11.6429	4.96e-05	0.0857	GGCCCCAGGGCC
IRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	16	36	-	9.72581	4.96e-05	0.174	AGGTTGTCTCACTTCCTGTTC
IRF1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	37	57	+	9.72581	4.96e-05	0.174	AGGTTGTCTCACTTCCTGTTC
IRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	58	78	-	9.72581	4.96e-05	0.174	AGGTTGTCTCACTTCCTGTTC
IRF1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	79	99	+	9.72581	4.96e-05	0.174	AGGTTGTCTCACTTCCTGTTC
HOXD13	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	100	109	-	11.9524	4.96e-05	1	CCAATAAACA
HOXD13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	6	15	+	11.9524	4.96e-05	1	CCAATAAACA
HOXD13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	6	15	+	11.9524	4.96e-05	1	CCAATAAACA
HOXD13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	49	58	+	11.9524	4.96e-05	1	CCAATAAACA
HOXD13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	49	58	+	11.9524	4.96e-05	1	CCAATAAACA
HOXD13	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	99	108	+	11.9524	4.96e-05	1	CCAATAAACA
BATF3	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	17	30	+	2.16667	4.96e-05	0.185	CTCTGACGTCACGG
BATF3	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	85	98	-	2.16667	4.96e-05	0.185	CTCTGACGTCACGG
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	96	110	-	11.3077	4.96e-05	0.335	GAAAACCAAAGTTCC
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	28	40	-	9.13793	4.96e-05	0.147	CAGCAGGAAATGA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	28	40	-	9.13793	4.96e-05	0.147	CAGCAGGAAATGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	58	70	+	9.13793	4.96e-05	0.147	CACCCGGAAGGCG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	58	70	+	9.13793	4.96e-05	0.147	CACCCGGAAGGCG
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	58	70	+	9.13793	4.96e-05	0.147	CACCCGGAAGGCG
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	58	70	+	9.13793	4.96e-05	0.147	CACCCGGAAGGCG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	58	70	+	9.13793	4.96e-05	0.147	CACCCGGAAGGCG
ZNF410	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	61	77	+	-1.65455	4.96e-05	1	CCCACCCCCTAGTACTT
ZNF410	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	61	77	+	-1.65455	4.96e-05	1	CCCACCCCCTAGTACTT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	+	11.0492	4.96e-05	0.0586	CGCCCCGCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	+	11.0492	4.96e-05	0.0586	CGCCCCGCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	+	11.0492	4.96e-05	0.0586	CGCCCCGCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	+	11.0492	4.96e-05	0.0586	CGCCCCGCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	44	56	-	11.0492	4.96e-05	0.0586	TGCCCCAGAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	44	56	-	11.0492	4.96e-05	0.0586	TGCCCCAGAGGGC
EVX1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	10.4717	4.96e-05	1	AATAATTAGC
ATF4	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	29	41	-	10.4754	4.96e-05	0.564	TAATGACGCCACA
ATF4	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	74	86	+	10.4754	4.96e-05	0.564	TAATGACGCCACA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	40	54	+	11.069	4.97e-05	0.0121	CCTCCTCCTCCCTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	40	54	+	11.069	4.97e-05	0.0121	CCTCCTCCTCCCTCT
SP2	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	59	73	-	11.069	4.97e-05	0.0121	CTCCCTCCCCCACAA
NFKB2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	54	66	+	9.16667	4.97e-05	0.258	TGGGGCTAACCCG
NFKB2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	49	61	-	9.16667	4.97e-05	0.258	TGGGGCTAACCCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	17	27	+	10.1897	4.97e-05	0.0818	GCGCGCACGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	11	21	-	10.1897	4.97e-05	0.0818	GCGCGCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	11	21	-	10.1897	4.97e-05	0.0818	GCGCGCACGCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	34	44	-	10.1897	4.97e-05	0.0818	CCGCCCCCACA
EGR2	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	46	56	-	10.1897	4.97e-05	0.0818	CCGCCCCCACA
EGR2	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	59	69	+	10.1897	4.97e-05	0.0818	CCGCCCCCACA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	71	81	-	10.1897	4.97e-05	0.0818	ACGGCCACGTA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	40	52	+	10.8852	4.97e-05	0.0641	AGCCTCTGAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	40	52	+	10.8852	4.97e-05	0.0641	AGCCTCTGAGGGA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	69	79	-	10.8182	4.97e-05	0.018	GCACGGGCGCG
ESR1	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	22	38	+	1.06061	4.97e-05	0.514	AAAGTCGCTATGACATT
ESR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	77	93	-	1.06061	4.97e-05	0.514	AAAGTCGCTATGACATT
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	77	93	-	1.06061	4.97e-05	0.514	AAAGTCGCTATGACATT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	27	37	+	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	27	37	+	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	45	55	+	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	67	77	+	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	1	11	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	38	48	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	38	48	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	44	54	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	60	70	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	78	88	-	11.1034	4.97e-05	0.0187	GCCCCACCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	73	84	-	11.3684	4.97e-05	0.0301	CACACGGCCCCT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	4	16	+	3.38776	4.97e-05	0.248	CGGGATTCCCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	4	16	+	3.38776	4.97e-05	0.248	CGGGATTCCCCCT
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	25	36	+	4.46552	4.97e-05	0.189	TGCCGCGTGCCC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	29	40	-	4.46552	4.97e-05	0.189	TGCCGCGTGCCC
EGR1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	37	50	+	10.9231	4.97e-05	0.0209	CAGTCTCCCACGCC
EGR1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	65	78	-	10.9231	4.97e-05	0.0209	CAGTCTCCCACGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	70	83	-	10.9231	4.97e-05	0.0209	GCCCCTCCCCTGTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	70	83	-	10.9231	4.97e-05	0.0209	GCCCCTCCCCTGTC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	70	83	-	10.9231	4.97e-05	0.0209	GCCCCTCCCCTGTC
GBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	82	91	-	11.5319	4.97e-05	1	GGCAATTAGA
GBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	82	91	-	11.5319	4.97e-05	1	GGCAATTAGA
EGR3	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	26	40	-	7.36207	4.97e-05	0.0381	CCCCGCCCCCTCCGG
EGR3	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	43	57	+	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	38	52	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	38	52	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	38	52	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	38	52	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	38	52	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	58	72	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	58	72	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	58	72	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	58	72	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	58	72	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	86	100	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	86	100	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	86	100	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	86	100	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	86	100	-	7.36207	4.97e-05	0.0381	TGACGCCCACGAGTC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	30	44	+	-1.23636	4.97e-05	0.545	GATCAAAACGAAACC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	95	109	+	-1.23636	4.97e-05	0.545	GATCAAAACGAAACC
Nkx3-1	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	13	21	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	101	109	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	104	112	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	104	112	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	104	112	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	104	112	-	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	3	11	+	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	6	14	+	12.2545	4.97e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	35	43	+	12.2545	4.97e-05	1	GCCACTTAC
TBP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	52	66	+	11.4722	4.97e-05	0.553	CTATAAAATGAGGAG
TBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	52	66	+	11.4722	4.97e-05	0.553	CTATAAAATGAGGAG
TBP	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	49	63	-	11.4722	4.97e-05	0.553	CTATAAAATGAGGAG
TBP	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	73	87	-	11.4722	4.97e-05	0.553	TTATAAATGGCTGGG
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	93	107	+	8.92857	4.97e-05	0.106	GCCCCCCTGGAGAGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	93	107	+	8.92857	4.97e-05	0.106	GCCCCCCTGGAGAGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	10	24	-	8.92857	4.97e-05	0.106	GCCCCCCTGGAGAGG
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	10	24	-	8.92857	4.97e-05	0.106	GCCCCCCTGGAGAGG
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	5	19	-	6.80899	4.97e-05	0.266	CACACCCTAGGGTTC
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	5	19	-	6.80899	4.97e-05	0.266	CACACCCTAGGGTTC
Znf423	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	52	66	+	6.80899	4.97e-05	0.266	CACACCCTAGGGTTC
Znf423	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	52	66	+	6.80899	4.97e-05	0.266	CACACCCTAGGGTTC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	+	12.3333	4.97e-05	0.262	GTCACGTGGA
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	+	12.3333	4.97e-05	0.262	GTCACGTGGA
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	+	12.3333	4.97e-05	0.262	GTCACGTGGA
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	+	12.3333	4.97e-05	0.262	GTCACGTGGA
EHF	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	8	19	-	10.9016	4.97e-05	0.125	TGCCAGGAAGTG
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	46	56	+	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	79	89	+	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	79	89	+	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	99	109	+	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	99	109	+	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	4	14	-	12.0612	4.97e-05	0.318	CATTCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	74	84	-	12.0612	4.97e-05	0.318	CCTTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	74	84	-	12.0612	4.97e-05	0.318	CCTTCCTGGAA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	2	13	+	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	2	13	+	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	2	13	+	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	2	13	+	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	18	29	+	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	73	84	-	9.65455	4.97e-05	0.195	GCTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	73	84	-	9.65455	4.97e-05	0.195	GCTGACGTCAGA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	16	26	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	17	27	-	11.5962	4.97e-05	0.0139	ACTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	17	27	-	11.5962	4.97e-05	0.0139	ACTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	17	27	-	11.5962	4.97e-05	0.0139	ACTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	17	27	-	11.5962	4.97e-05	0.0139	ACTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	31	41	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	34	44	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	41	51	-	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	64	74	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	55	65	-	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	55	65	-	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	55	65	-	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	70	80	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	70	80	+	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	71	81	-	11.5962	4.97e-05	0.0139	CGCCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	88	98	+	11.5962	4.97e-05	0.0139	ACTCCGCCCAC
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	+	11.4909	4.98e-05	0.198	GCTGAGTCATT
ZBTB18	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	16	28	+	10.4429	4.98e-05	0.729	AAGCCAGAGGTGG
FLI1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.7021	4.98e-05	0.115	AACGGAAGTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.7021	4.98e-05	0.115	AACGGAAGTA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.7021	4.98e-05	0.115	AACGGAAGTA
Gabpa	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	40	50	+	11.5082	4.98e-05	0.057	CCGGAAGCCTC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	65	75	-	11.5082	4.98e-05	0.057	CCGGAAGCCTC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	91	101	-	11.5082	4.98e-05	0.057	GCGGAAGCCCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	91	101	-	11.5082	4.98e-05	0.057	GCGGAAGCCCG
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	75	90	+	-7.65385	4.98e-05	0.329	CTGCCGCCCGCGGCGG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	75	90	+	-7.65385	4.98e-05	0.329	CTGCCGCCCGCGGCGG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	75	90	+	-7.65385	4.98e-05	0.329	CTGCCGCCCGCGGCGG
HES5	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	6	17	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	19	30	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	19	30	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	19	30	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	19	30	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	40	-	3.94828	4.98e-05	0.296	TGCCACGTGCGC
HES5	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	69	80	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	71	82	-	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	25	36	+	3.94828	4.98e-05	0.296	TGCCACGTGCGC
HES5	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	33	44	+	3.94828	4.98e-05	0.296	ACGCACGCGCCG
HES5	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	98	109	+	3.94828	4.98e-05	0.296	ACGCACGCGCCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	-	10.7586	4.98e-05	0.0554	TCCCCAGAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	-	10.7586	4.98e-05	0.0554	TCCCCAGAGGGGG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	26	40	+	10.303	4.98e-05	0.298	TTACTTTTGCTTTCA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	38	52	+	10.303	4.98e-05	0.298	TTACTTTTGCTTTCA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	38	52	+	10.303	4.98e-05	0.298	TTACTTTTGCTTTCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	73	-	11.6327	4.98e-05	0.0857	TCCCCGCGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	73	-	11.6327	4.98e-05	0.0857	TCCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	18	29	-	11.7273	4.98e-05	0.055	CGCCGGCAGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	18	29	-	11.7273	4.98e-05	0.055	CGCCGGCAGGCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	38	49	-	11.7273	4.98e-05	0.055	CGCCCTGCGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	66	77	+	11.7273	4.98e-05	0.055	CGCCCTGCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	69	80	+	11.7273	4.98e-05	0.055	CCCCCGCGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	69	80	+	11.7273	4.98e-05	0.055	CCCCCGCGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	83	94	+	11.7273	4.98e-05	0.055	CGCCCTGCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	83	94	+	11.7273	4.98e-05	0.055	CGCCCTGCGGCC
RORA(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	38	51	-	7.29213	4.98e-05	1	ACACTTTGGGTCAC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	87	97	-	12.4286	4.98e-05	0.166	GGCAGCTGAGC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	87	97	-	12.4286	4.98e-05	0.166	GGCAGCTGAGC
SP4	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	31	47	+	4.92727	4.98e-05	0.026	CCCTCCCCGCCCCCGCT
SP4	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	33	49	-	4.92727	4.98e-05	0.026	CCGGCCCCGGCCCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	66	82	+	4.92727	4.98e-05	0.026	CCGGCCCCGGCCCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	66	82	+	4.92727	4.98e-05	0.026	CCGGCCCCGGCCCCGGC
SP4	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	68	84	-	4.92727	4.98e-05	0.026	CCCTCCCCGCCCCCGCT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	7	21	-	9.44262	4.98e-05	0.437	CTGACAAAGCATTTA
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	32	46	+	9.44262	4.98e-05	0.437	CTGACAAAGCATTTA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	+	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	-	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	-	11.6909	4.98e-05	0.0702	AGCCGGGGGCG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	88	100	+	12.3878	4.98e-05	0.162	TGCACCTGTGCTT
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	88	100	+	12.3878	4.98e-05	0.162	TGCACCTGTGCTT
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	7	21	-	9.13115	4.98e-05	0.0589	AGCCACTCCCATGCA
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	7	21	-	9.13115	4.98e-05	0.0589	AGCCACTCCCATGCA
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	7	21	-	9.13115	4.98e-05	0.0589	AGCCACTCCCATGCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	7	21	-	9.13115	4.98e-05	0.0589	AGCCACTCCCATGCA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	22	35	+	11.8462	4.99e-05	0.22	GGCTGCTGAGTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	22	35	+	11.8462	4.99e-05	0.22	GGCTGCTGAGTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	98	111	+	11.8462	4.99e-05	0.22	TATGGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	98	111	+	11.8462	4.99e-05	0.22	TATGGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	98	111	+	11.8462	4.99e-05	0.22	TATGGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	98	111	+	11.8462	4.99e-05	0.22	TATGGCTGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	100	113	+	11.8462	4.99e-05	0.22	TGATAATGATTCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	24	37	-	11.8462	4.99e-05	0.22	TGATAATGATTCAT
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	84	102	-	11.0806	4.99e-05	0.147	TGGGGCAGGCAAGGGAGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	84	102	-	11.0806	4.99e-05	0.147	TGGGGCAGGCAAGGGAGAC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	75	88	-	6.56122	4.99e-05	0.0719	GGCGCGCAGGGGGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	93	106	-	6.56122	4.99e-05	0.0719	GGCTGCCTGGGGGG
NR1H2::RXRA	WILDTYPE__mrna.noflip.NA__chr17:10452902..10453016,-__1036.1.0.0	54	70	+	-4.17978	4.99e-05	1	AAAGCTCCAAGGTAAGT
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	5	24	-	4.70642	4.99e-05	0.0566	CCCCGCCCCAGCACCAATCG
KLF13	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	14	31	-	5.68966	4.99e-05	0.263	GTGTTACGCCTCTTCTAA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	97	-	11.6909	4.99e-05	0.0893	CCCCCTAGGGCC
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	69	79	-	12.303	4.99e-05	1	AAATAAACAAC
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	69	79	-	12.303	4.99e-05	1	AAATAAACAAC
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	2	12	+	12.303	4.99e-05	1	AAATAAACAAC
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	2	12	+	12.303	4.99e-05	1	AAATAAACAAC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	65	75	+	11.7692	4.99e-05	0.0744	ACCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	65	75	+	11.7692	4.99e-05	0.0744	ACCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	65	75	+	11.7692	4.99e-05	0.0744	ACCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	65	75	+	11.7692	4.99e-05	0.0744	ACCCCCAGGCT
GLIS2	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	24	37	+	8.98361	4.99e-05	0.185	TACCCCACGGGGCC
DUXA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	30	42	+	11.7419	4.99e-05	1	CAGACCCAATCAT
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	+	10.6724	4.99e-05	0.248	CTCACGCGAC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	26	39	+	11.4697	4.99e-05	0.0548	AAGGGTGGGGCCTC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	59	70	-	11.2586	4.99e-05	0.365	TCGACCCCCCGC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	59	70	-	11.2586	4.99e-05	0.365	TCGACCCCCCGC
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	83	94	-	11.2586	4.99e-05	0.365	GAAACCACCCAA
MSC	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	+	11.1341	4.99e-05	0.569	AGCAGCTGTC
MSC	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	28	37	+	11.1341	4.99e-05	0.569	AACAGCTTCT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	+	11.1341	4.99e-05	0.569	AGCAGCTGTC
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	+	11.1341	4.99e-05	0.569	AGCAGCTGTC
EBF1	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	59	72	+	9.90164	4.99e-05	0.365	AGCCCCTGGGTACT
Alx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	3	19	+	11.6234	4.99e-05	1	TCAATTAATTAAGAGCT
Alx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	3	19	+	11.6234	4.99e-05	1	TCAATTAATTAAGAGCT
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	60	70	+	12.0408	4.99e-05	0.318	GCTTCCCAGTA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	60	70	+	12.0408	4.99e-05	0.318	GCTTCCCAGTA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	60	70	+	12.0408	4.99e-05	0.318	GCTTCCCAGTA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	60	70	+	12.0408	4.99e-05	0.318	GCTTCCCAGTA
Stat5a::Stat5b	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	45	55	-	12.0408	4.99e-05	0.318	GCTTCCCAGTA
Myc	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	17	26	-	12.4	4.99e-05	0.392	CCATGTGCAG
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	17	26	-	12.4	4.99e-05	0.392	CCATGTGCAG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	50	+	12.4	4.99e-05	0.392	ACACGTGCCT
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	50	+	12.4	4.99e-05	0.392	ACACGTGCCT
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	89	98	-	12.4	4.99e-05	0.392	CCATGTGCAG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	92	101	-	12.4	4.99e-05	0.392	ACACGTGCCT
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	92	101	-	12.4	4.99e-05	0.392	ACACGTGCCT
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	77	86	-	11.6197	4.99e-05	0.127	ATCGGAAATG
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	77	86	-	11.6197	4.99e-05	0.127	ATCGGAAATG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	-	11.0328	4.99e-05	0.0586	TGCCCTTTAGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	-	11.0328	4.99e-05	0.0586	TCCCCGGGCGGCT
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	44	58	-	10.8701	4.99e-05	0.9	CGTTACTTAGTAACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	44	58	-	10.8701	4.99e-05	0.9	CGTTACTTAGTAACA
IRF1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	25	45	+	9.70968	5e-05	0.174	GTTCACTTTCTTTCTCTCCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	65	76	-	11.3182	5e-05	0.109	CCGCGTCCCCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	65	76	-	11.3182	5e-05	0.109	CCGCGTCCCCCC
SMAD3	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	34	43	+	10.1091	5e-05	1	AGTCCAGACA
SMAD3	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	33	42	-	10.1091	5e-05	1	AGTCCAGACA
SMAD3	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	73	82	+	10.1091	5e-05	1	AGTCCAGACA
SMAD3	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	72	81	-	10.1091	5e-05	1	AGTCCAGACA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	25	38	-	6.55102	5e-05	0.0719	GAGGGCCAGAGGAG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	25	38	-	6.55102	5e-05	0.0719	GAGGGCCAGAGGAG
HOXC13	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	110	-	11.2419	5e-05	1	GCTTGTAAACA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	81	98	-	9.90244	5e-05	0.15	CGGTCTCCTATTGGTCAA
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	81	98	-	9.90244	5e-05	0.15	CGGTCTCCTATTGGTCAA
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	108	+	12.3878	5e-05	0.145	AGCAGGTGGGG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	108	+	12.3878	5e-05	0.145	AGCAGGTGGGG
Gata1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.1.0	69	79	-	11.9388	5e-05	1	GCTTTATCTGT
SP8	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	1	12	-	11.3553	5e-05	0.0301	CCCACTCCCCTA
SP8	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	19	30	-	11.3553	5e-05	0.0301	CCCACTCCCCTA
SP8	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	36	47	+	11.3553	5e-05	0.0301	CCCACTCCCCTA
SP8	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	85	96	+	11.3553	5e-05	0.0301	CCCACTCCCCTA
FIGLA	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	57	66	-	11.9138	5e-05	0.859	AACACCTGCA
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	104	113	+	11.9138	5e-05	0.859	AACACCTGCA
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	104	113	+	11.9138	5e-05	0.859	AACACCTGCA
ELK4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	26	36	-	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	22	32	+	11.8545	5e-05	0.0583	CCTCTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	22	32	+	11.8545	5e-05	0.0583	CCTCTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	29	39	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	29	39	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	46	56	+	11.8545	5e-05	0.0583	ACGTTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	46	56	+	11.8545	5e-05	0.0583	ACGTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	79	89	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	79	89	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	79	89	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	79	89	+	11.8545	5e-05	0.0583	CAGCTTCCGCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	7	21	+	7.34483	5e-05	0.0381	CCCCGCCCCCTTATA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	30	44	-	7.34483	5e-05	0.0381	CTCCGGCCCCGCCTT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	30	44	-	7.34483	5e-05	0.0381	CTCCGGCCCCGCCTT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	54	68	+	7.34483	5e-05	0.0381	CTCCGGCCCCGCCTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	54	68	+	7.34483	5e-05	0.0381	CTCCGGCCCCGCCTT
EGR3	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	47	61	-	7.34483	5e-05	0.0381	CTCCGGCCCCGCCTT
Npas2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	+	12.3934	5e-05	0.333	CCCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	-	12.3934	5e-05	0.333	CCCACGTGCC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	-	12.3934	5e-05	0.333	CCCACGTGCC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	+	12.3934	5e-05	0.333	CCCACGTGCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	+	12.3934	5e-05	0.333	CCCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	-	12.4394	5e-05	0.295	TCCACGTGGC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	-	12.4394	5e-05	0.295	TCCACGTGGC
Sox3	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	36	45	+	12.2759	5e-05	0.659	CCATTGTTCC
Sox3	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	78	87	+	12.2759	5e-05	0.659	CCATTGTTCC
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	48	58	-	8.36364	5e-05	0.862	CTGAAGGTCAG
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	71	81	-	8.36364	5e-05	0.862	CTGAAGGTCAG
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	71	81	-	8.36364	5e-05	0.862	CTGAAGGTCAG
HSF2	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	13	25	-	9.74545	5e-05	1	TTCTAGTAATTTC
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	4	15	+	11.5246	5e-05	0.41	CTAGGCGCCCTT
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	4	15	+	11.5246	5e-05	0.41	CTAGGCGCCCTT
Pax6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	27	40	-	11.1222	5e-05	1	TTATCGCTTCACTT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	27	40	-	11.1222	5e-05	1	TTATCGCTTCACTT
Pax6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	27	40	-	11.1222	5e-05	1	TTATCGCTTCACTT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	27	40	-	11.1222	5e-05	1	TTATCGCTTCACTT
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	27	37	+	11.5273	5e-05	0.189	TGGTGATTCAG
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	-	11.9623	5e-05	1	GGTGACGTAAGA
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	-	11.9623	5e-05	1	GGTGACGTAAGA
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	-	11.9623	5e-05	1	GGTGACGTAAGA
DBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	-	11.9623	5e-05	1	GGTGACGTAAGA
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	-	11.9623	5e-05	1	GGTGACGTAAGA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	+	11.8364	5e-05	0.0523	CCCCTCGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	+	11.8364	5e-05	0.0523	CCCCTCGGGCG
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	23	37	-	11.3617	5e-05	0.32	GAGGATGATGCAAGC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	72	86	+	11.3617	5e-05	0.32	GAGGATGATGCAAGC
SOX8	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	30	45	+	-11.0758	5e-05	1	TGCATTTTGCAATGTT
SOX8	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	66	81	-	-11.0758	5e-05	1	TGCATTTTGCAATGTT
DUX4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	43	53	-	11.6809	5e-05	1	TAAACCCATCA
DUX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	43	53	-	11.6809	5e-05	1	TAAACCCATCA
DUX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	43	53	-	11.6809	5e-05	1	TAAACCCATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	43	53	-	11.6809	5e-05	1	TAAACCCATCA
DUX4	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	43	53	-	11.6809	5e-05	1	TAAACCCATCA
DUX4	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	62	72	+	11.6809	5e-05	1	TAAACCCATCA
SP1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	6	16	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	35	45	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	33	43	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	57	67	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	69	79	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	72	82	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	72	82	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	75	85	+	11.5769	5e-05	0.0139	CCTCCTCCCCA
SP1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	99	109	-	11.5769	5e-05	0.0139	CCTCCTCCCCA
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	114	+	11.898	5.01e-05	0.136	GGCAGGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	114	+	11.898	5.01e-05	0.136	GGCAGGTGGCC
ZIC4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	35	49	+	10.9273	5.01e-05	0.109	CACGCCCCGGCGTGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	66	80	-	10.9273	5.01e-05	0.109	CACGCCCCGGCGTGC
EN2	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	73	82	-	10.9661	5.01e-05	1	GGCAATTACG
EN2	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	33	42	+	10.9661	5.01e-05	1	GGCAATTACG
RFX5	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	7	22	-	7.5	5.01e-05	0.275	GGTGCCCCTGGCAACA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	28	42	+	11.0517	5.01e-05	0.0122	TCTCCGCCCTCATGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	28	42	+	11.0517	5.01e-05	0.0122	TCTCCGCCCTCATGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	32	46	+	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	56	70	+	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	61	75	+	11.0517	5.01e-05	0.0122	CGCCCACCCCGCCCT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	64	78	+	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	73	87	+	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	73	87	+	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	37	51	-	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	45	59	-	11.0517	5.01e-05	0.0122	CCTCCTCCTCTTCCT
ELF4	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	37	48	+	9.90164	5.01e-05	0.1	GACCCGGAAACA
ELF4	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	78	-	9.90164	5.01e-05	0.1	GACCCGGAAACA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	15	26	-	11.6224	5.01e-05	0.0857	TCCCTCCAGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	23	34	-	11.6224	5.01e-05	0.0857	TCCCTCCAGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	23	34	-	11.6224	5.01e-05	0.0857	TCCCTCCAGGCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	89	100	+	11.6224	5.01e-05	0.0857	TCCCTCCAGGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	22	35	-	7.25532	5.01e-05	0.0994	TCCCCCGTGCTGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	80	93	+	7.25532	5.01e-05	0.0994	TCCCCCGTGCTGCG
MAX	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	+	12.5192	5.01e-05	0.298	ACCACGTGAA
SP4	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	54	70	+	4.90909	5.01e-05	0.0261	GAAACCCCGCCTGCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	41	57	-	4.90909	5.01e-05	0.0261	CACGCCCCGCACCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	41	57	-	4.90909	5.01e-05	0.0261	CACGCCCCGCACCCGCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	41	57	-	4.90909	5.01e-05	0.0261	CACGCCCCGCACCCGCG
SP4	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	45	61	-	4.90909	5.01e-05	0.0261	GAAACCCCGCCTGCCCC
Arntl	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	8	17	-	11.7377	5.01e-05	0.234	TGGCACGTGG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	74	83	+	11.3171	5.01e-05	0.545	ACAATCACAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	74	83	+	11.3171	5.01e-05	0.545	ACAATCACAG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	24	34	+	10.8	5.01e-05	0.0181	ACGCTGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	97	107	-	10.8	5.01e-05	0.0181	ACGCTGGCGCG
BHLHE40	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	11.9038	5.01e-05	0.273	ACCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	11.9038	5.01e-05	0.273	ACCACGTGAC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	+	10.7414	5.01e-05	0.0554	AGCCGTAGGGGGA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	+	10.7414	5.01e-05	0.0554	TGCCGCGCGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	1	10	-	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	19	28	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	28	37	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	31	40	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	31	40	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	65	74	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	84	-	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	88	97	-	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	105	114	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	105	114	+	11.4388	5.01e-05	0.0206	TGGGCGGTGC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	1	21	-	10.2245	5.01e-05	0.0167	AGGGGAGCAGGGCGGGGACGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	25	45	-	10.2245	5.01e-05	0.0167	GGGTGCCGAGTGGGCGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	25	45	-	10.2245	5.01e-05	0.0167	GGGTGCCGAGTGGGCGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	73	93	-	10.2245	5.01e-05	0.0167	CAGGGAAGGCTTGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	75	95	-	10.2245	5.01e-05	0.0167	GGGGAAGGGCCGGTATGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	75	95	-	10.2245	5.01e-05	0.0167	GGGGAAGGGCCGGTATGAAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	81	101	-	10.2245	5.01e-05	0.0167	CAGGGAAGGCTTGGAGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	11	31	+	10.2245	5.01e-05	0.0167	AGAGGGAGGGAGGCAGGGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	14	34	+	10.2245	5.01e-05	0.0167	CAGGGAAGGCTTGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	39	+	10.2245	5.01e-05	0.0167	GAGGGCGGGGCCGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	39	+	10.2245	5.01e-05	0.0167	GAGGGCGGGGCCGGGGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	39	+	10.2245	5.01e-05	0.0167	GAGGGCGGGGCCGGGGTGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	22	42	+	10.2245	5.01e-05	0.0167	CAGGGAAGGCTTGGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	56	76	+	10.2245	5.01e-05	0.0167	GGAGGCCGGAGCTGTGGGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	71	91	+	10.2245	5.01e-05	0.0167	AGTGAAGGCAGAGAGAGAGGC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	94	114	+	10.2245	5.01e-05	0.0167	AGGGGAGCAGGGCGGGGACGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	13	28	-	10.8182	5.01e-05	0.0389	CTCCGCCCAGCCGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	13	28	-	10.8182	5.01e-05	0.0389	CTCCGCCCAGCCGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	29	44	-	10.8182	5.01e-05	0.0389	CTCCGGCCCCGCCTTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	29	44	-	10.8182	5.01e-05	0.0389	CTCCGGCCCCGCCTTC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	54	69	+	10.8182	5.01e-05	0.0389	CTCCGGCCCCGCCTTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	54	69	+	10.8182	5.01e-05	0.0389	CTCCGGCCCCGCCTTC
EGR4	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	46	61	-	10.8182	5.01e-05	0.0389	CTCCGGCCCCGCCTTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	56	71	-	10.8182	5.01e-05	0.0389	CTCCGCCCAGCCGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	56	71	-	10.8182	5.01e-05	0.0389	CTCCGCCCAGCCGCCT
CENPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	48	62	+	11.0192	5.01e-05	0.848	CCCGCTTGGCGCGCC
CENPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	48	62	+	11.0192	5.01e-05	0.848	CCCGCTTGGCGCGCC
MYF6	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	+	11.2727	5.01e-05	1	GGCAGCTGTT
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	-	11.2727	5.01e-05	1	GGCAGCTGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.7414	5.01e-05	0.126	ACCGGAAGGC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.7414	5.01e-05	0.126	ACCGGAAGGC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.7414	5.01e-05	0.126	ACCGGAAGGC
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	12	23	+	11.58	5.01e-05	1	TTTATGGTAATT
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	54	65	-	11.58	5.01e-05	1	TTTATGGTAATT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	41	55	-	10.2879	5.01e-05	0.298	AAAGTTTTAGTTTTT
STAT3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	9	19	+	11.6122	5.01e-05	0.266	ATGCCTGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	9	19	+	11.6122	5.01e-05	0.266	ATGCCTGGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	45	55	-	11.6122	5.01e-05	0.266	CTTCTTAGAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	45	55	-	11.6122	5.01e-05	0.266	CTTCTTAGAAA
STAT3	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	96	106	-	11.6122	5.01e-05	0.266	ATGCCTGGAAA
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	14	24	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	14	24	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	14	24	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	50	60	-	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	80	90	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	80	90	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	80	90	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	80	90	+	11.4082	5.01e-05	0.531	GCTGCGGGCGC
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	-	3.73469	5.01e-05	1	TGGCATGTGTCC
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	+	3.73469	5.01e-05	1	TGGCATGTGTCC
YY2	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	82	92	+	11.7424	5.01e-05	0.305	TTCCGCCATGG
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	96	106	-	11.7424	5.01e-05	0.305	AGCCGCCATCG
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	96	106	-	11.7424	5.01e-05	0.305	AGCCGCCATCG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	96	106	-	11.7424	5.01e-05	0.305	AGCCGCCATCG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	96	106	-	11.7424	5.01e-05	0.305	AGCCGCCATCG
NFKB1	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	3	15	-	3.34694	5.01e-05	0.248	TGGGGAGCTCCCT
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	5	19	+	-1.27273	5.01e-05	0.545	ACAAGAACTGAAACT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	5	19	+	-1.27273	5.01e-05	0.545	ACAAGAACTGAAACT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	22	34	-	11.0164	5.01e-05	0.0586	GGCCGTCGGGGGG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	81	93	+	11.0164	5.01e-05	0.0586	GGCCGTCGGGGGG
USF1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	28	38	+	11.5918	5.01e-05	0.179	CCCATGTGTCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	9	28	-	4.68807	5.02e-05	0.0567	CCGCCACACCCCCAACCCAC
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	90	106	+	4.19672	5.02e-05	0.563	CGGTCCACTGGAGGTCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	1	11	-	11.4697	5.02e-05	0.0469	AGTCACGCCCT
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	1	10	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	9	18	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	22	31	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	22	31	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	50	59	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	57	66	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	57	66	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	57	66	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	62	71	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	62	71	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	76	85	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	88	97	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	88	97	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	88	97	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	88	97	+	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	93	102	+	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	10	19	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	10	19	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	10	19	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	10	19	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	13	22	-	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	13	22	-	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	19	28	-	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	19	28	-	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	19	28	-	11.1835	5.02e-05	0.0548	CCCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	22	31	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	22	31	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	28	37	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	28	37	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	28	37	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	28	37	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	30	39	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	60	69	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	60	69	-	11.1835	5.02e-05	0.0548	CCACCCCCTC
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	13	27	+	11.2885	5.02e-05	0.335	TTAGGGCAAGGTGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	13	27	+	11.2885	5.02e-05	0.335	TTAGGGCAAGGTGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	13	27	+	11.2885	5.02e-05	0.335	TTAGGGCAAGGTGCA
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	81	92	+	10.8852	5.02e-05	0.125	GACCAGGAAGCG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	81	92	+	10.8852	5.02e-05	0.125	GACCAGGAAGCG
EHF	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	69	80	-	10.8852	5.02e-05	0.125	GACCAGGAAGCG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	97	111	+	11.25	5.02e-05	0.426	GAGTCAGCATGCCAC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	97	111	+	11.25	5.02e-05	0.426	GAGTCAGCATGCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	49	59	+	11.4797	5.02e-05	0.0198	ACCACTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	31	41	-	11.4797	5.02e-05	0.0198	TACCCGCCCAC
E2F2	WILDTYPE__mrna.noflip.NA__chr10:14574678..14574792,-__974.1.0.0	4	19	+	2.28049	5.02e-05	1	AATACGGAGCCTTTTA
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	11.7927	5.02e-05	0.16	CCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	11.7927	5.02e-05	0.16	CCCACGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	11.7927	5.02e-05	0.16	CCCACGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	11.7927	5.02e-05	0.16	CCCACGTGAC
TFEC	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	11.7927	5.02e-05	0.16	CCCACGTGAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	16	29	+	10.7241	5.02e-05	0.243	CGGTCCCTAGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	46	59	+	10.7241	5.02e-05	0.243	GTTGACATAGTAAC
Rfx1	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	86	99	-	10.7241	5.02e-05	0.243	CGGTCCCTAGCAAC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	66	76	-	10.7818	5.02e-05	0.0181	GCGGTGGCGCA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	13	23	+	11.1633	5.02e-05	0.285	GGTCACGTGGA
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	13	23	+	11.1633	5.02e-05	0.285	GGTCACGTGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	13	23	+	11.1633	5.02e-05	0.285	GGTCACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	13	23	+	11.1633	5.02e-05	0.285	GGTCACGTGGA
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	50	59	-	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	12	21	+	11.2323	5.02e-05	0.908	TATTTCCATT
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	17	34	+	9.89024	5.02e-05	0.15	AGGGTCGTCATTGGACAA
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	17	34	+	9.89024	5.02e-05	0.15	AGGGTCGTCATTGGACAA
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	6	17	+	4.39655	5.02e-05	0.189	CGGCCCGCGCCG
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	6	17	+	4.39655	5.02e-05	0.189	CGGCCCGCGCCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	4	17	+	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	8	21	-	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	8	21	-	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	8	21	-	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	9	22	-	10.9038	5.02e-05	0.0211	GCGCCGCTTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	69	82	+	10.9038	5.02e-05	0.0211	CCTTCGCCCCCAGA
EGR1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	94	107	+	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	98	111	-	10.9038	5.02e-05	0.0211	CGCCTGCCTACGCC
NRL	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	54	64	-	11.1154	5.02e-05	0.823	GAGGTGCTGAC
Foxa2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	31	+	11.84	5.02e-05	1	TGTTTACTGAAC
Foxa2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	31	+	11.84	5.02e-05	1	TGTTTACTGAAC
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	86	97	-	11.7079	5.02e-05	0.865	ATTGTGCTGAGA
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	86	97	-	11.7079	5.02e-05	0.865	ATTGTGCTGAGA
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	29	-	9.85455	5.02e-05	0.111	ACGGCGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	29	-	9.85455	5.02e-05	0.111	ACGGCGGAAGTA
ELF1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	86	97	+	9.85455	5.02e-05	0.111	ACGGCGGAAGTA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	10	21	+	11.5082	5.03e-05	0.41	CTTGGCGCCGAT
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	10	21	+	11.5082	5.03e-05	0.41	CTTGGCGCCGAT
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	36	47	+	11.5082	5.03e-05	0.41	CTTGGCGCCGAT
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	36	47	+	11.5082	5.03e-05	0.41	CTTGGCGCCGAT
ETV1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.6909	5.03e-05	0.111	ACCGGAAGGT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	11.6909	5.03e-05	0.111	TCCGGAAATA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	11.6909	5.03e-05	0.111	TCCGGAAATA
ETV1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	11.6909	5.03e-05	0.111	TCCGGAAATA
ETV1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	11.6909	5.03e-05	0.111	TCCGGAAATA
Ascl2	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	87	96	+	11.6286	5.03e-05	0.211	TACAGCTGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	33	47	+	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	33	47	+	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
EGR3	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	38	52	+	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	63	77	-	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	63	77	-	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
EGR3	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	68	82	-	7.32759	5.03e-05	0.0381	CCCCACCCACCCGAC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	63	77	+	8.9	5.03e-05	0.106	CACCCCCTCTGGGGA
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	63	77	+	8.9	5.03e-05	0.106	CACCCCCTCTGGGGA
ZIC3	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	33	47	-	8.9	5.03e-05	0.106	AACCTCCCCCGGGGC
NFIC::TLX1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	68	81	-	6.45918	5.03e-05	0.365	AGGCACGCCGCCAG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	34	47	+	6.45918	5.03e-05	0.365	AGGCACGCCGCCAG
LHX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	11.7111	5.03e-05	1	GCCAATTAGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	25	38	-	6.53061	5.03e-05	0.0719	GGGGCGGAGGGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	25	38	-	6.53061	5.03e-05	0.0719	GGGGCGGAGGGCGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	77	90	+	6.53061	5.03e-05	0.0719	GGGGCGGAGGGCGG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.6809	5.03e-05	0.115	GCCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.6809	5.03e-05	0.115	GCCGGAAGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	86	103	-	-12.1053	5.03e-05	0.0453	AAAAAGAAGGAAGAAGGA
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	33	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	33	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	33	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	33	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	39	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	87	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	93	-	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	33	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	33	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	33	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	33	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	39	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	87	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
HES5	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	93	+	3.86207	5.03e-05	0.296	GGCCACGTGGCC
THAP1	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	81	89	+	10.3421	5.03e-05	0.215	GTGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	85	93	+	10.3421	5.03e-05	0.215	GTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	85	93	+	10.3421	5.03e-05	0.215	GTGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	16	24	-	10.3421	5.03e-05	0.215	GTGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	16	24	-	10.3421	5.03e-05	0.215	GTGCCCGCA
THAP1	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	26	34	-	10.3421	5.03e-05	0.215	GTGCCCGCA
HINFP	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	76	87	+	11.303	5.03e-05	0.109	GCCCGTCCGCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	52	71	+	4.6789	5.03e-05	0.0567	CCCGCCCCCCCCCCCTGCCG
Hes2	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	3	15	+	11.0476	5.03e-05	0.498	CGCGCGCACGTGC
Hes2	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	26	38	+	11.0476	5.03e-05	0.498	CGCGCGCACGTGC
Hes2	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	89	-	11.0476	5.03e-05	0.498	CGCGCGCACGTGC
Hes2	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	112	-	11.0476	5.03e-05	0.498	CGCGCGCACGTGC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	-	10.8525	5.03e-05	0.0641	TGCCGCCGAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	+	10.8525	5.03e-05	0.0641	GCCCTTGGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	+	10.8525	5.03e-05	0.0641	GCCCTTGGGGGCT
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	24	35	+	9.61818	5.03e-05	0.195	CTTTACGTCATC
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	24	35	+	9.61818	5.03e-05	0.195	CTTTACGTCATC
Creb5	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	80	91	-	9.61818	5.03e-05	0.195	CTTTACGTCATC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	47	61	+	11.4583	5.03e-05	0.553	ATATATAAGGAGGTG
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	47	61	+	11.4583	5.03e-05	0.553	ATATATAAGGAGGTG
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	91	104	+	11.3387	5.03e-05	0.411	TTTCTTGAAATGCC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	74	92	+	11.0645	5.03e-05	0.147	ACAGGCAGCCAGGCTTGCC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	74	92	+	11.0645	5.03e-05	0.147	ACAGGCAGCCAGGCTTGCC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	74	92	+	11.0645	5.03e-05	0.147	ACAGGCAGCCAGGCTTGCC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	108	+	11.0645	5.03e-05	0.147	AACAGCTGCAGAGCGGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	108	+	11.0645	5.03e-05	0.147	AACAGCTGCAGAGCGGGAC
JUNB	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	82	92	+	11.7755	5.03e-05	0.198	TCATGAGTCAG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	26	37	-	10.9655	5.03e-05	0.33	GCAACCACAATG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	26	37	-	10.9655	5.03e-05	0.33	GCAACCACAATG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	26	37	-	10.9655	5.03e-05	0.33	GCAACCACAATG
GLI2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	36	47	-	10.9655	5.03e-05	0.33	CCGCCCACCCTC
GLI2	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	36	47	-	10.9655	5.03e-05	0.33	CCGCCCACCCTC
GLI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	46	57	-	10.9655	5.03e-05	0.33	CCGCCCACCCTC
GLI2	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	69	80	+	10.9655	5.03e-05	0.33	CCGCCCACCCTC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	22	38	+	4.89091	5.03e-05	0.0261	TACTCTCCGCCCCCCCC
SP4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	31	47	+	4.89091	5.03e-05	0.0261	GTGACCACGCCCTGGCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	41	57	-	4.89091	5.03e-05	0.0261	TACTCTCCGCCCCCCCC
SP4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	68	84	-	4.89091	5.03e-05	0.0261	GTGACCACGCCCTGGCC
SP4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	93	109	+	4.89091	5.03e-05	0.0261	AGGGCCCCGCCGCCCTG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	36	46	-	11.6379	5.04e-05	0.0473	GCGCGCGAACA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	47	57	-	11.6379	5.04e-05	0.0473	GCGCGCGAACA
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	47	57	-	11.6379	5.04e-05	0.0473	GCGCGCGAACA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	47	57	-	11.6379	5.04e-05	0.0473	GCGCGCGAACA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	47	57	-	11.6379	5.04e-05	0.0473	GCGCGCGAACA
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.9273	5.04e-05	0.113	ACAGGAAGTA
ERG	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.9273	5.04e-05	0.113	ACAGGAAGTA
ERG	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.9273	5.04e-05	0.113	TCCGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.9273	5.04e-05	0.113	AGCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.9273	5.04e-05	0.113	AGCGGAAGTC
TP63	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	23	40	-	-0.534483	5.04e-05	0.838	GGCATGCTGGCTCACGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	12	22	-	11.8571	5.04e-05	0.136	ATCACGTGACG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	12	22	-	11.8571	5.04e-05	0.136	ATCACGTGACG
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	+	11.8793	5.04e-05	1	GGCATATGCT
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	+	11.8793	5.04e-05	1	GGCATATGCT
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	99	108	-	11.9024	5.04e-05	0.472	CTCACCTGAC
KLF13	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	74	91	+	5.65517	5.04e-05	0.265	GAGCCACACCCACACGGT
ERF	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	17	-	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	21	-	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	49	58	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	61	70	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	61	70	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	78	87	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	78	87	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
ERF	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	98	107	+	11.6143	5.04e-05	0.0942	GCAGGAAGTG
MTF1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	95	108	-	7.09756	5.04e-05	0.5	TGAGCGCACGGCAG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	+	10.7241	5.04e-05	0.0554	CCCCCTGCAGGCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	96	110	-	9.09836	5.04e-05	0.0595	TACCACACCCCGGGC
LEF1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	108	-	9.43548	5.04e-05	1	AGAGATTAAAGGTGA
ISL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	3	10	+	10.7788	5.04e-05	1	CCACTTAA
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	1	8	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	1	8	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	1	8	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	1	8	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	4	11	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	4	11	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	4	11	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	4	11	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	6	13	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	9	16	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	12	19	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	12	19	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	12	19	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	14	21	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	14	21	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	14	21	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	14	21	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	15	22	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	15	22	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	16	23	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	17	24	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	17	24	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	19	26	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	19	26	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	20	27	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	22	29	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	25	32	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	26	33	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	26	33	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	27	34	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	27	34	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	28	35	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	37	44	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	43	50	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	49	56	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	50	57	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	57	64	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	59	66	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	63	70	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	63	70	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	63	70	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	63	70	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	65	72	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Enhancer.flip.antisense__chr17:25821695..25821809,+__2544.1.0.0	65	72	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	68	75	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	75	82	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	78	85	+	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	79	86	+	12.1475	5.04e-05	0.306	CCAATCAG
Sox2	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	12	19	+	13.377	5.04e-05	1	CCTTTGTC
Sox2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	38	45	+	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	48	55	+	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	53	60	+	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	75	82	+	13.377	5.04e-05	1	CCTTTGTC
Sox2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	88	95	+	13.377	5.04e-05	1	CCTTTGTC
Bhlha15	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	16	23	-	12.4918	5.04e-05	1	CCATATGC
ISL2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	97	104	-	10.7788	5.04e-05	1	CCACTTAA
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	7	14	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	80	87	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	80	87	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	80	87	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	80	87	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	89	96	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	89	96	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	89	96	+	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	93	100	+	12.551	5.04e-05	0.775	ACATTCCT
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	1	8	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	1	8	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	1	8	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	1	8	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	2	9	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	2	9	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	2	9	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	2	9	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	7	14	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	7	14	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	8	15	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	14	21	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	20	27	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	20	27	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	20	27	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	20	27	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	22	29	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	22	29	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	29	36	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	30	37	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	32	39	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	33	40	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	36	43	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	36	43	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	36	43	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.flip.sense__chr17:25821695..25821809,-__2061.1.0.0	43	50	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	43	50	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	49	56	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	51	58	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	51	58	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	65	72	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	69	76	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	69	76	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	69	76	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	69	76	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	81	88	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	82	89	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	89	96	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	92	99	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	96	103	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	99	106	-	12.1475	5.04e-05	0.306	CCAATCAG
Bhlha15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	74	81	+	12.4918	5.04e-05	1	CCATATGC
Bhlha15	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	92	99	+	12.4918	5.04e-05	1	CCATATGC
Sox2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	20	27	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	23	30	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	23	30	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	51	58	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	56	63	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	60	67	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	70	77	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	77	84	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	77	84	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	77	84	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	77	84	-	13.377	5.04e-05	1	CCTTTGTC
Sox2	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	87	94	-	13.377	5.04e-05	1	CCTTTGTC
TEAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	4	11	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	4	11	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	8	15	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	15	22	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	22	29	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	22	29	-	12.551	5.04e-05	0.775	ACATTCCT
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	104	111	-	12.551	5.04e-05	0.775	ACATTCCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	6	19	+	7.23404	5.04e-05	0.0994	TCCCTCCCGCCGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	6	19	+	7.23404	5.04e-05	0.0994	TCCCTCCCGCCGCT
ZIC1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	96	109	-	7.23404	5.04e-05	0.0994	TCCCTCCCGCCGCT
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	47	60	-	6.52041	5.04e-05	0.0719	GGGACCCAAGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	47	60	-	6.52041	5.04e-05	0.0719	GGGACCCAAGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	85	98	-	6.52041	5.04e-05	0.0719	GGGACCCAAGGGCG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	85	98	-	6.52041	5.04e-05	0.0719	GGGACCCAAGGGCG
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	17	30	+	6.52041	5.04e-05	0.0719	GGGACCCAAGGGCG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	81	100	-	4.66972	5.04e-05	0.0567	CCAGACACCACCACCGCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	81	100	-	4.66972	5.04e-05	0.0567	CCAGACACCACCACCGCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	55	74	+	4.66972	5.04e-05	0.0567	CCCGCACCCCACCCCCATCT
Rarb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	18	33	+	-2.89655	5.04e-05	0.983	TGATGTCACAAGCTCA
Rarb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	18	33	+	-2.89655	5.04e-05	0.983	TGATGTCACAAGCTCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	1	11	+	11.7091	5.04e-05	0.139	GGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	1	11	+	11.7091	5.04e-05	0.139	GGCCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	27	37	+	11.7091	5.04e-05	0.139	GGCCGGAAGTG
ELF5	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	42	-	11.7091	5.04e-05	0.139	AGCCGGAAGGG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	88	-	11.7091	5.04e-05	0.139	GGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	88	-	11.7091	5.04e-05	0.139	GGCCGGAAGTG
CEBPG	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	15	24	-	10.8571	5.05e-05	0.806	ATTGCTCAAC
CEBPG	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	91	100	+	10.8571	5.05e-05	0.806	ATTGCTCAAC
NR3C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	+	6.12766	5.05e-05	0.952	AGGAACATGGTGTTTAC
MEOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	17	26	+	10.3663	5.05e-05	1	GGTAATTATT
MEOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	17	26	+	10.3663	5.05e-05	1	GGTAATTATT
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	29	43	-	11.3404	5.05e-05	0.32	TCTAATGACGCCACA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	72	86	+	11.3404	5.05e-05	0.32	TCTAATGACGCCACA
PBX1	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	9	20	+	11.398	5.05e-05	1	CCACCAATCAGA
SP2	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	11	25	+	11.0345	5.05e-05	0.0123	GTCCCACCCAGGGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	27	41	+	11.0345	5.05e-05	0.0123	GCCCTGCCCTCGGCA
SP2	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	64	78	+	11.0345	5.05e-05	0.0123	CCCCTTCCCCTTCCC
SP2	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	21	35	-	11.0345	5.05e-05	0.0123	GGCCCGCCCCAATTT
SP2	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	37	51	-	11.0345	5.05e-05	0.0123	CCCCTTCCCCTTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	47	61	-	11.0345	5.05e-05	0.0123	GCCCCACCCCAATTC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	47	61	-	11.0345	5.05e-05	0.0123	GCCCCACCCCAATTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	47	61	-	11.0345	5.05e-05	0.0123	GCCCCACCCCAATTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	47	61	-	11.0345	5.05e-05	0.0123	GCCCCACCCCAATTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	24	33	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	24	33	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	24	33	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	24	33	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	24	33	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	43	52	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	56	65	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	66	75	+	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	50	59	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	50	59	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	50	59	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	50	59	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	72	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	72	-	11.8654	5.05e-05	0.098	ACCGGAAGCA
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	7	18	+	8.85321	5.05e-05	0.848	TGAGAACTGTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	7	18	+	8.85321	5.05e-05	0.848	TGAGAACTGTCA
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	76	86	+	11.6727	5.05e-05	0.0702	ACCCGGAGGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	29	39	-	11.6727	5.05e-05	0.0702	ACCCGGAGGCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	46	56	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	46	56	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	46	56	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	46	56	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	55	65	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	55	65	+	11.5577	5.05e-05	0.014	CCCCCTCCCTG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	25	35	+	11.8182	5.05e-05	0.0523	CCCCTCCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	91	101	-	11.8182	5.05e-05	0.0523	CCCCTCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	91	101	-	11.8182	5.05e-05	0.0523	CCCCTCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	91	101	-	11.8182	5.05e-05	0.0523	CCCCTCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	91	101	-	11.8182	5.05e-05	0.0523	CCCCTCCGGCC
GLIS1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	25	40	+	-7.73077	5.05e-05	0.329	CTACACCTCACGAACT
GLIS1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	75	90	-	-7.73077	5.05e-05	0.329	CTACACCTCACGAACT
Nr1h3::Rxra	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	9	27	-	11.129	5.05e-05	0.671	TGACTCAGTGTGGCCTGCT
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	88	106	+	11.129	5.05e-05	0.671	TGACTCAGTGTGGCCTGCT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	88	106	+	11.129	5.05e-05	0.671	TGACTCAGTGTGGCCTGCT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	15	29	+	9.40984	5.05e-05	0.439	ATGAGTCATCTCGTT
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	10	20	-	11.4727	5.05e-05	0.19	GGGTGGGTCAG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	10	20	-	11.4727	5.05e-05	0.19	GGGTGGGTCAG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	38	+	11.6122	5.05e-05	0.0857	TGCCCTCGGCCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	90	+	11.6122	5.05e-05	0.0857	TGCCCTCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	90	+	11.6122	5.05e-05	0.0857	TGCCCTCGGCCT
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	31	44	+	11.069	5.05e-05	1	CAAATGCAGATGAG
EGR3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	32	46	+	7.31034	5.05e-05	0.0381	GCCTGCCCGCGCACC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	27	41	-	7.31034	5.05e-05	0.0381	GCCCGCTCCCGCTTG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	27	41	-	7.31034	5.05e-05	0.0381	GCCCGCTCCCGCTTG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	27	41	-	7.31034	5.05e-05	0.0381	GCCCGCTCCCGCTTG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	63	77	+	7.31034	5.05e-05	0.0381	GCCTGCCCGCGCACC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	63	77	+	7.31034	5.05e-05	0.0381	GCCTGCCCGCGCACC
EGR3	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	74	88	+	7.31034	5.05e-05	0.0381	GCCCGCTCCCGCTTG
EGR3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	69	83	-	7.31034	5.05e-05	0.0381	GCCTGCCCGCGCACC
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	47	56	-	11.9038	5.05e-05	0.805	ATTATGCAAT
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	47	56	-	11.9038	5.05e-05	0.805	ATTATGCAAT
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	35	49	+	8.88571	5.05e-05	0.106	CCCCCCCCCGCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	72	86	+	8.88571	5.05e-05	0.106	CACTCCCTACAGTGA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	+	10.8361	5.05e-05	0.0641	TGCCCGCCAGGGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	-	10.8361	5.05e-05	0.0641	GGCCCTCGAGGGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	42	+	10.8361	5.05e-05	0.0641	CGCCCTTCCGGCT
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	-	10.8361	5.05e-05	0.0641	TGCCCGCCAGGGG
HOXC13	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	29	39	-	11.2258	5.05e-05	1	CCTCGTTAACC
HOXC13	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	76	86	+	11.2258	5.05e-05	1	CCTCGTTAACC
HOXC13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	76	86	+	11.2258	5.05e-05	1	CCTCGTTAACC
HOXC13	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	76	86	+	11.2258	5.05e-05	1	CCTCGTTAACC
HOXC13	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	76	86	+	11.2258	5.05e-05	1	CCTCGTTAACC
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	12	22	+	11.9231	5.05e-05	0.355	ATTCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	101	111	+	11.9231	5.05e-05	0.355	ATTCTGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	101	111	+	11.9231	5.05e-05	0.355	ATTCTGACTCA
Hes1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	14	23	+	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	19	28	-	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	30	39	-	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	33	42	-	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	42	51	+	10.1538	5.05e-05	0.0926	CCCACGCGTA
Hes1	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	64	73	-	10.1538	5.05e-05	0.0926	CCCACGCGTA
Hes1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	73	82	+	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	87	96	+	10.1538	5.05e-05	0.0926	AGCACGCGCG
Hes1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	92	101	-	10.1538	5.05e-05	0.0926	AGCACGCGCG
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	21	35	+	11.3077	5.05e-05	0.157	TGGCCGGCCAATGGG
NFYB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	21	35	+	11.3077	5.05e-05	0.157	TGGCCGGCCAATGGG
NFYB	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	80	94	-	11.3077	5.05e-05	0.157	TGGCCGGCCAATGGG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	38	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	38	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	52	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	60	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	65	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	65	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	77	87	+	11.0862	5.05e-05	0.0188	ACCACTCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	112	+	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	3	13	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	34	44	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	34	44	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	50	60	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	50	60	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	55	65	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	77	87	-	11.0862	5.05e-05	0.0188	GCTCCGCCCAC
ID4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	24	33	-	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	24	33	-	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	24	33	-	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	24	33	-	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	24	33	-	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	103	-	12.6721	5.06e-05	0.389	CGCACCTGTG
ID4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	103	-	12.6721	5.06e-05	0.389	CGCACCTGTG
ID4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	103	-	12.6721	5.06e-05	0.389	CGCACCTGTG
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	103	-	12.6721	5.06e-05	0.389	CGCACCTGTG
ID4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	19	+	12.6721	5.06e-05	0.389	CGCACCTGCG
ID4	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	21	+	12.6721	5.06e-05	0.389	CGCACCTGTG
ID4	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	82	91	+	12.6721	5.06e-05	0.389	CGCACCTGCG
TP63	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	67	84	-	-0.551724	5.06e-05	0.838	AACTTGAAAAAACATGTT
TP63	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	67	84	-	-0.551724	5.06e-05	0.838	AACTTGAAAAAACATGTT
FOS	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	7	17	-	11.8298	5.06e-05	0.221	GCTTACTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	-	11.8298	5.06e-05	0.221	GCTGAGTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	-	11.8298	5.06e-05	0.221	GCTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	98	108	+	11.8298	5.06e-05	0.221	GCTTACTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	98	108	+	11.8298	5.06e-05	0.221	GCTTACTCATC
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	8.86538	5.06e-05	0.165	GTCACGTGGC
BHLHE41	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	8.86538	5.06e-05	0.165	GTCACGTGGC
CDX2	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	80	90	-	12.2373	5.06e-05	1	CGGCAATAAAC
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	71	80	-	11.9423	5.06e-05	0.439	TAACCACAAG
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	102	111	-	11.9423	5.06e-05	0.439	TAACCACAAG
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	24	33	+	11.9423	5.06e-05	0.439	TAACCACAAG
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	44	53	+	11.9423	5.06e-05	0.439	TAACCACAAG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	27	46	-	4.66055	5.06e-05	0.0567	ACAAGACCCACCCACAGACC
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	33	45	-	11.3279	5.06e-05	0.359	TTGGCTGACACCG
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	70	82	+	11.3279	5.06e-05	0.359	TTGGCTGACACCG
Klf4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	25	34	+	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	35	44	-	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	54	63	+	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	53	62	-	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	63	72	+	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	71	80	+	11.4286	5.06e-05	0.0206	AGGGTGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	81	90	-	11.4286	5.06e-05	0.0206	AGGGTGGGCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	38	51	+	6.5102	5.06e-05	0.0719	GGGGCGGAGGGTGG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	7	17	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	7	17	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	13	23	+	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	13	23	+	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	13	23	+	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	13	23	+	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	24	34	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	30	40	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	30	40	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	48	58	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	94	104	+	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	7	17	-	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	18	28	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	18	28	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	57	67	-	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	98	108	-	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	100	110	-	11.4715	5.06e-05	0.0198	CCCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	101	111	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	101	111	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	101	111	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	101	111	-	11.4715	5.06e-05	0.0198	TCCACACCTCC
Tcf12	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	62	+	12.4082	5.06e-05	0.168	GACAGCTGTGT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	38	53	+	10.8	5.06e-05	0.0389	GCCCGCCCCGGCCCTA
EGR4	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	36	51	-	10.8	5.06e-05	0.0389	GCGCGCCCCCGCGGTC
EGR4	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	64	79	+	10.8	5.06e-05	0.0389	GCGCGCCCCCGCGGTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	51	66	-	10.8	5.06e-05	0.0389	CCCCGCCTCCGCGACT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	51	66	-	10.8	5.06e-05	0.0389	CCCCGCCTCCGCGACT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	51	66	-	10.8	5.06e-05	0.0389	CCCCGCCTCCGCGACT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	51	66	-	10.8	5.06e-05	0.0389	CCCCGCCTCCGCGACT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	30	50	+	9.67742	5.06e-05	0.174	CGTTCCTTCCTCTTCCTCTCT
IRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	30	50	+	9.67742	5.06e-05	0.174	CGTTCCTTCCTCTTCCTCTCT
IRF1	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	64	84	+	9.67742	5.06e-05	0.174	GATTGTTTTCTCTTTCAGAAA
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	48	68	-	9.67742	5.06e-05	0.174	CGTTCCTTCCTCTTCCTCTCT
IRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	48	68	-	9.67742	5.06e-05	0.174	CGTTCCTTCCTCTTCCTCTCT
IRF1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	65	85	-	9.67742	5.06e-05	0.174	CGTTCCTTCCTCTTCCTCTCT
MTF1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	86	99	+	7.08537	5.06e-05	0.5	TTTGCACGCCGCCC
MTF1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	16	29	-	7.08537	5.06e-05	0.5	TTTGCACGCCGCCC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	70	90	-	10.2041	5.06e-05	0.0168	GGGTGAGGTCTGGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	71	91	-	10.2041	5.06e-05	0.0168	GGGAGAACAGGGAAGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	71	91	-	10.2041	5.06e-05	0.0168	GGGAGAACAGGGAAGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	72	92	-	10.2041	5.06e-05	0.0168	GAAAGTGCGGAGTGGGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	72	92	-	10.2041	5.06e-05	0.0168	GAAAGTGCGGAGTGGGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	81	101	-	10.2041	5.06e-05	0.0168	GGAGGGGTGGAGGCGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	86	106	-	10.2041	5.06e-05	0.0168	GGTGGGAGAGGGGGAAAAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	86	106	-	10.2041	5.06e-05	0.0168	GGTGGGAGAGGGGGAAAAGAA
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	14	34	+	10.2041	5.06e-05	0.0168	GGAGGGGTGGAGGCGGAGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	19	39	+	10.2041	5.06e-05	0.0168	GGAGGGGAAGTGGGTGAAAGG
Stat6	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	72	86	+	11.5862	5.06e-05	0.692	GGTTTTCTGAGAAGC
CREB3L1	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	57	70	-	9.30303	5.06e-05	0.291	CCGCCACGTCCAAG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	80	94	+	10.8939	5.06e-05	0.107	GCCTCGCGCTAACGG
POU5F1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	33	41	+	11.6106	5.07e-05	1	AATGCAAAT
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	36	44	-	11.6106	5.07e-05	1	AATGCAAAT
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	19	30	+	11.2903	5.07e-05	1	TGATGCAAATGT
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	19	30	+	11.2903	5.07e-05	1	TGATGCAAATGT
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	3	14	-	11.2903	5.07e-05	1	TGATGCAAATGT
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	3	14	-	11.2903	5.07e-05	1	TGATGCAAATGT
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	97	108	-	11.2903	5.07e-05	1	TGATGCAAATGT
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	97	108	-	11.2903	5.07e-05	1	TGATGCAAATGT
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	30	39	+	11.9775	5.07e-05	0.871	GTGATGTGAT
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	3	13	+	10.7636	5.07e-05	0.0182	ACGGCGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	3	13	+	10.7636	5.07e-05	0.0182	ACGGCGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	12	22	-	10.7636	5.07e-05	0.0182	ACGGCGGCGCA
Zfx	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	11	24	-	11.4394	5.07e-05	0.0553	TCACCTCCGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	91	104	+	11.4394	5.07e-05	0.0553	TCACCTCCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	100	113	-	11.4394	5.07e-05	0.0553	GCGGCCGGCGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	100	113	-	11.4394	5.07e-05	0.0553	GCGGCCGGCGCCTG
ATF7	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	74	87	-	8.3	5.07e-05	0.163	CTGTGGCGTCATTA
ATF7	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	28	41	+	8.3	5.07e-05	0.163	CTGTGGCGTCATTA
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	19	28	+	11.404	5.07e-05	0.165	GTAGGGGAGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	19	28	+	11.404	5.07e-05	0.165	GTAGGGGAGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	19	28	+	11.404	5.07e-05	0.165	GTAGGGGAGA
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	87	96	-	11.404	5.07e-05	0.165	GTAGGGGAGA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	5	17	+	3.30612	5.07e-05	0.248	CGGGGCCCCCCCT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	11	23	+	3.30612	5.07e-05	0.248	CGCGGATCCCCCA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	67	79	+	3.30612	5.07e-05	0.248	CGGGGCCCCCCCT
TP53	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	67	84	+	7.34694	5.07e-05	0.979	AACATGTTTTTTCAAGTT
TP53	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	67	84	+	7.34694	5.07e-05	0.979	AACATGTTTTTTCAAGTT
ZNF740	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	3	12	+	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	21	30	+	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	98	107	+	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	6	15	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	7	16	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	8	17	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	53	62	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	53	62	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	85	94	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	96	105	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
ZNF740	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	103	112	-	11.1743	5.07e-05	0.0548	CTCCCCCCTC
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	15	29	+	10.0429	5.07e-05	0.121	AGAGCTGAGAGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	36	50	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	36	50	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	36	50	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	65	79	+	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	55	69	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	55	69	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	55	69	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	55	69	-	10.0429	5.07e-05	0.121	GCGGGGCAGGGGCGG
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	36	48	-	9.10606	5.07e-05	0.258	CCGGGAAGCCCCG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	36	48	-	9.10606	5.07e-05	0.258	CCGGGAAGCCCCG
PAX1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	40	56	+	6.56364	5.07e-05	0.619	CTTCCCGCTTCAGCAGG
RELA	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	13	22	+	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	23	32	+	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	23	32	+	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	33	42	+	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	33	42	+	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	71	80	-	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	71	80	-	11.0816	5.07e-05	0.219	TGGGGTTCCC
RELA	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	93	102	-	11.0816	5.07e-05	0.219	TGGGGTTCCC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	88	101	-	6.43878	5.07e-05	0.365	TGGCCGGCTGACAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.0	88	101	-	6.43878	5.07e-05	0.365	TGGCCGGCTGACAA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	9	22	-	10.8846	5.07e-05	0.0212	ACGCTGCCCCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	16	29	-	10.8846	5.07e-05	0.0212	CACCATCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	16	29	-	10.8846	5.07e-05	0.0212	CACCATCCCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	16	29	-	10.8846	5.07e-05	0.0212	CACCATCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	93	106	+	10.8846	5.07e-05	0.0212	TCTCCTCCTCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	93	106	+	10.8846	5.07e-05	0.0212	TCTCCTCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	93	106	+	10.8846	5.07e-05	0.0212	TCTCCTCCTCCTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	93	106	+	10.8846	5.07e-05	0.0212	TCTCCTCCTCCTGC
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	32	45	+	11.3226	5.07e-05	0.411	CTGCCTGGAAACCT
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	58	71	+	11.3226	5.07e-05	0.411	CTGCCTGGAAACCT
JUN	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	33	45	+	11.1429	5.07e-05	0.303	AACATGATGAAAT
JUN	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	73	85	+	11.1429	5.07e-05	0.303	CTAATGACGCCAC
JUN	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	78	90	+	11.1429	5.07e-05	0.303	GCAGTGACGCCAT
JUN	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	30	42	-	11.1429	5.07e-05	0.303	CTAATGACGCCAC
JUN	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	70	82	-	11.1429	5.07e-05	0.303	AACATGATGAAAT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	+	11.6545	5.07e-05	0.0702	GGCCTCCGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	-	11.6545	5.07e-05	0.0702	GGCCTCCGGCT
POU6F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	5	14	+	11.8367	5.07e-05	1	AATAATTAAT
POU6F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	5	14	+	11.8367	5.07e-05	1	AATAATTAAT
POU6F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	5	14	+	11.8367	5.07e-05	1	AATAATTAAT
POU6F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	5	14	+	11.8367	5.07e-05	1	AATAATTAAT
POU6F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	5	14	-	11.8367	5.07e-05	1	ATTAATTATT
POU6F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	5	14	-	11.8367	5.07e-05	1	ATTAATTATT
POU6F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	5	14	-	11.8367	5.07e-05	1	ATTAATTATT
POU6F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	5	14	-	11.8367	5.07e-05	1	ATTAATTATT
Hnf4a	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	31	46	+	4.16364	5.07e-05	0.407	AGGGGCGGAGTCTGCT
Hnf4a	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	77	92	+	4.16364	5.07e-05	0.407	AGGGGCGGAGTCTGCT
Hnf4a	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	23	38	-	4.16364	5.07e-05	0.407	AGGGGCGGAGTCTGCT
Hnf4a	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	69	84	-	4.16364	5.07e-05	0.407	AGGGGCGGAGTCTGCT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	1	20	-	4.65138	5.07e-05	0.0567	TCACCACCCAACCCTAGCGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	1	20	-	4.65138	5.07e-05	0.0567	TCACCACCCAACCCTAGCGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	27	46	+	4.65138	5.07e-05	0.0567	TCACCACCCAACCCTAGCGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	27	46	+	4.65138	5.07e-05	0.0567	TCACCACCCAACCCTAGCGA
TFAP2B	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	19	30	+	11.6727	5.07e-05	0.0893	ACCCCAGGGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	+	11.6727	5.07e-05	0.0893	GGCCCCAGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	+	11.6727	5.07e-05	0.0893	GGCCCCAGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	-	11.6727	5.07e-05	0.0893	GGCCCCAGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	-	11.6727	5.07e-05	0.0893	GGCCCCAGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	85	96	-	11.6727	5.07e-05	0.0893	ACCCCAGGGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	85	96	-	11.6727	5.07e-05	0.0893	ACCCCAGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	85	96	-	11.6727	5.07e-05	0.0893	ACCCCAGGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	85	96	-	11.6727	5.07e-05	0.0893	ACCCCAGGGGCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	-	11.6727	5.07e-05	0.0893	CGCCTGGAGGCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	32	42	-	11.5385	5.07e-05	0.014	CCACCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	32	42	-	11.5385	5.07e-05	0.014	CCACCGCCCCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	32	42	-	11.5385	5.07e-05	0.014	CCACCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	84	94	-	11.5385	5.07e-05	0.014	TCCCCGCCCAA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	64	81	-	-12.1447	5.07e-05	0.0456	GGAAAGAGGAAGGAAAGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	7	17	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	7	17	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	7	17	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	7	17	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	7	17	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	39	49	-	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	49	59	-	11.8364	5.07e-05	0.0583	GAACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	49	59	-	11.8364	5.07e-05	0.0583	GAACTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	38	48	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	38	48	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	56	66	+	11.8364	5.07e-05	0.0583	GAACTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	66	76	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	66	76	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	66	76	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	98	108	+	11.8364	5.07e-05	0.0583	CCTTTTCCGGT
ELF3	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	6	18	+	9.08621	5.07e-05	0.15	GAACAGGAAGTGC
Foxd3	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	21	32	+	11.7826	5.07e-05	1	GATTATTAATTT
MNT	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	12.4091	5.07e-05	0.295	CACACGTGCA
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	12.4091	5.07e-05	0.295	CACACGTGCA
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	12.4091	5.07e-05	0.295	CACACGTGCA
LEF1	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	91	105	-	9.41935	5.08e-05	1	AGTGTTCAAAGGAAT
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	40	58	-	11.0484	5.08e-05	0.147	GGGGGCTCGCGGGCGGGAC
CTCF	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	87	105	+	9.36066	5.08e-05	0.118	CCAGCAGGAGAGGGCTCTA
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	96	-	9.36066	5.08e-05	0.118	GGGGCACAAGGAGGAAGTG
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.1.0	18	27	+	12.2459	5.08e-05	0.281	AATGACGTCG
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.1	18	27	+	12.2459	5.08e-05	0.281	AATGACGTCG
Crem	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	71	80	+	12.2459	5.08e-05	0.281	AATGACGTCG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	30	40	+	11.8	5.08e-05	0.0523	AGCCTCCAGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	30	40	+	11.8	5.08e-05	0.0523	AGCCTCCAGCA
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	81	91	-	11.8	5.08e-05	0.0523	AGCCTCCAGCA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	94	104	-	11.8	5.08e-05	0.0523	AGCCTCCAGCA
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	98	108	-	11.8	5.08e-05	0.0523	AGCCTCCAGCA
ZIC1	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	7	20	-	7.21277	5.08e-05	0.0994	CCAGCCCCGCTGTG
ZIC1	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	22	35	+	7.21277	5.08e-05	0.0994	CCAGCCCCGCTGTG
ZIC1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	16	29	-	7.21277	5.08e-05	0.0994	GGCCGCCCGCCGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	16	29	-	7.21277	5.08e-05	0.0994	CACTCCCTGTGGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	16	29	-	7.21277	5.08e-05	0.0994	CACTCCCTGTGGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	16	29	-	7.21277	5.08e-05	0.0994	CACTCCCTGTGGGG
ZIC1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	49	62	+	7.21277	5.08e-05	0.0994	GGCCGCCCGCCGCC
ZIC1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	53	66	-	7.21277	5.08e-05	0.0994	GGCCGCCCGCCGCC
ZIC1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	86	99	+	7.21277	5.08e-05	0.0994	GGCCGCCCGCCGCC
ZIC1	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	80	93	-	7.21277	5.08e-05	0.0994	CCAGCCCCGCTGTG
ZIC1	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	95	108	+	7.21277	5.08e-05	0.0994	CCAGCCCCGCTGTG
ZIC1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	100	113	+	7.21277	5.08e-05	0.0994	CGCCGCCTGCCGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	65	78	+	6.5	5.08e-05	0.0719	GGGGCTCTGGGGAA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	65	78	+	6.5	5.08e-05	0.0719	GGGGCTCTGGGGAA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	-	10.9836	5.08e-05	0.0586	CGCCCTCGCGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	-	10.9836	5.08e-05	0.0586	CGCCCTCGCGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	36	48	-	10.9836	5.08e-05	0.0586	GGCCGCCGGGGGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	81	95	+	8.87143	5.08e-05	0.106	TCCTCCCCGCCGGGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	81	95	+	8.87143	5.08e-05	0.106	TCCTCCCCGCCGGGG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	81	95	+	8.87143	5.08e-05	0.106	TCCTCCCCGCCGGGG
ZIC3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	20	34	-	8.87143	5.08e-05	0.106	TCCTCCCCGCCGGGG
EN2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	19	28	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	19	28	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	19	28	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	19	28	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	29	38	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	29	38	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	64	73	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	68	77	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	68	77	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	68	77	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	68	77	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	80	89	-	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	16	25	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	16	25	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	26	35	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	26	35	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	27	36	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	42	51	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	67	76	+	10.9322	5.08e-05	1	GCCAATCAGC
EN2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	77	86	+	10.9322	5.08e-05	1	GCCAATCAGC
GLIS2	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	49	+	8.93443	5.08e-05	0.185	CGCCCCCAGCCGAG
GLIS2	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	66	79	-	8.93443	5.08e-05	0.185	CGCCCCCAGCCGAG
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	9	20	+	10.7245	5.08e-05	0.175	AGGATGGGGGCA
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	9	20	+	10.7245	5.08e-05	0.175	AGGATGGGGGCA
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	29	46	+	6.14679	5.08e-05	0.626	TGAAAATCAAACTGTGAC
IRF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	29	46	+	6.14679	5.08e-05	0.626	TGAAAATCAAACTGTGAC
IRF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	76	93	+	6.14679	5.08e-05	0.626	GGATAATGCAAGTGTTTA
IRF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	76	93	+	6.14679	5.08e-05	0.626	GGATAATGCAAGTGTTTA
IRF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	76	93	+	6.14679	5.08e-05	0.626	GGATAATGCAAGTGTTTA
IRF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	76	93	+	6.14679	5.08e-05	0.626	GGATAATGCAAGTGTTTA
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	63	80	-	6.14679	5.08e-05	0.626	TGAAAATCAAACTGTGAC
IRF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	63	80	-	6.14679	5.08e-05	0.626	TGAAAATCAAACTGTGAC
ELF1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	24	35	-	9.83636	5.08e-05	0.112	CGCGCGGAAGTA
JUND	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	+	11.3404	5.08e-05	0.204	ACTGACTCAGC
JUND	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	-	11.3404	5.08e-05	0.204	ACTGACTCAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	61	71	-	11.6207	5.08e-05	0.0475	CGGCGCGAACC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	61	71	-	11.6207	5.08e-05	0.0475	CGGCGCGAACC
E2F4	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	44	54	+	11.6207	5.08e-05	0.0475	CGGCGCGAACC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	9	19	-	11.4918	5.08e-05	0.0577	GCGGAAGGGGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	9	19	-	11.4918	5.08e-05	0.0577	GCGGAAGGGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	9	19	-	11.4918	5.08e-05	0.0577	GCGGAAGGGGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	16	26	-	11.4918	5.08e-05	0.0577	GCGGAAGTAAT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	16	26	-	11.4918	5.08e-05	0.0577	GCGGAAGTAAT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	59	69	+	11.4918	5.08e-05	0.0577	GCGGAAGGGGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	89	99	+	11.4918	5.08e-05	0.0577	GCGGAAGTAAT
HES5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	46	57	-	3.82759	5.08e-05	0.296	CGGCAGGTGCCC
MAFF	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	23	40	-	11.4	5.09e-05	0.965	CCTGTGTCAGCTAGTTCA
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	31	44	+	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	31	44	+	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	31	44	+	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	31	44	+	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	31	44	+	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	64	77	-	9.53448	5.09e-05	0.033	CCCCCCGCCCCCCG
EMX1	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	99	108	-	10.5841	5.09e-05	1	CCTAATGACG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	11.5091	5.09e-05	0.106	GGCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	11.5091	5.09e-05	0.106	GGCGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.5091	5.09e-05	0.106	ACCGGAAGGC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.5091	5.09e-05	0.106	ACCGGAAGGC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.5091	5.09e-05	0.106	ACCGGAAGGC
ETV5	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	11.5091	5.09e-05	0.106	GGCGGAAGTA
ETV5	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	11.5091	5.09e-05	0.106	GGCGGAAGTA
EBF1	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	8	21	+	9.85246	5.09e-05	0.365	CCTCCCCAGGGCCC
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	2	17	+	-7.76923	5.09e-05	0.329	TGGCCCCCCGCAGTGA
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	2	17	+	-7.76923	5.09e-05	0.329	TGGCCCCCCGCAGTGA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	4	16	-	10.8197	5.09e-05	0.0641	CGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	37	+	10.8197	5.09e-05	0.0641	GGCCCGCGGGGGG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	29	-	10.8197	5.09e-05	0.0641	CCCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	32	44	-	10.8197	5.09e-05	0.0641	CGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	62	74	+	10.8197	5.09e-05	0.0641	CCCCCCGCAGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	68	80	-	10.8197	5.09e-05	0.0641	CGCCGTGGGGGCG
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	111	+	10.8197	5.09e-05	0.0641	CGCCGTGGGGGCG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	20	37	+	-12.1579	5.09e-05	0.0457	GAAATGAAGAAAGCATGA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	4	21	-	-12.1579	5.09e-05	0.0457	GAAATGAAGAAAGCATGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	14	28	+	11.0172	5.09e-05	0.0123	CCCCTGCCCCAGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	14	28	+	11.0172	5.09e-05	0.0123	CCCCTGCCCCAGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	52	66	+	11.0172	5.09e-05	0.0123	CCCCCTCTCCCCGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	76	90	+	11.0172	5.09e-05	0.0123	CCTCCTCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	7	21	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	7	21	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	7	21	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	7	21	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	25	39	-	11.0172	5.09e-05	0.0123	CCTCCTCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	49	63	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	49	63	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	49	63	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	49	63	-	11.0172	5.09e-05	0.0123	TGCCCTCCTTCCTCC
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	6	20	+	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	30	44	+	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	17	31	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	17	31	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	22	36	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	22	36	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	27	41	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	48	62	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	58	72	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	58	72	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	58	72	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	61	75	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
FOXP1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	71	85	-	11.5775	5.09e-05	0.341	AAAAAAAAAAAAAAG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	-	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	+	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	+	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	+	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	+	11.7115	5.09e-05	0.0744	CGCCGCCGGCT
Foxa2	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	78	89	-	11.81	5.09e-05	1	TGTTTACCATGG
Foxa2	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	37	+	11.81	5.09e-05	1	TGTTTACCATGG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	+	11.602	5.09e-05	0.0857	CGCCGCCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	65	+	11.602	5.09e-05	0.0857	AGCCTGCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	65	+	11.602	5.09e-05	0.0857	AGCCTGCGGGGA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	65	+	11.602	5.09e-05	0.0857	AGCCTGCGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	80	+	11.602	5.09e-05	0.0857	AGCCTGCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	80	+	11.602	5.09e-05	0.0857	AGCCTGCGGGGA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	97	-	11.602	5.09e-05	0.0857	CCCCCTAGGGCC
E2F7	WILDTYPE__Lincrna.noflip.NA__chr6:58287638..58287752,-__753.1.0.0	50	63	+	-3.34426	5.09e-05	1	ATTTGCCGCGAGTT
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	17	26	+	11.5273	5.09e-05	0.655	CTCAGCTGAC
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	17	26	+	11.5273	5.09e-05	0.655	CTCAGCTGAC
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	59	68	-	11.5273	5.09e-05	0.655	CTCAGCTGAC
Hic1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	19	27	-	11.5962	5.09e-05	0.516	ATGCCACCT
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	36	44	-	11.5962	5.09e-05	0.516	ATGCCACCT
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	36	44	-	11.5962	5.09e-05	0.516	ATGCCACCT
Hic1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	36	44	-	11.5962	5.09e-05	0.516	ATGCCACCT
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	36	44	-	11.5962	5.09e-05	0.516	ATGCCACCT
Creb5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	+	9.6	5.09e-05	0.196	CGTTACGTAATT
ZBTB7A	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	86	97	-	11.3714	5.09e-05	0.217	ACCGCCCACCCG
ZBTB7A	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	18	29	+	11.3714	5.09e-05	0.217	ACCGCCCACCCG
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	45	59	+	10.9455	5.09e-05	0.312	AGGAAGTGAGAGAGT
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	45	59	+	10.9455	5.09e-05	0.312	AGGAAGTGAGAGAGT
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	73	87	+	10.9455	5.09e-05	0.312	AGGAAGTGAGAGAGT
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	73	87	+	10.9455	5.09e-05	0.312	AGGAAGTGAGAGAGT
NKX2-8	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	57	65	+	11.4423	5.09e-05	1	GCACTTCAG
NKX2-8	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	41	49	-	11.4423	5.09e-05	1	GCACTTCAG
NKX2-8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	50	58	-	11.4423	5.09e-05	1	GCACTTCAG
NKX2-8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	50	58	-	11.4423	5.09e-05	1	GCACTTCAG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	1	10	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	1	10	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	9	18	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	11	20	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	7	16	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	17	26	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	17	26	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	19	28	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	19	28	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	18	27	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	18	27	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	18	27	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	18	27	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	19	28	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	19	28	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	20	29	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	20	29	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	34	43	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	34	43	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	38	47	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	38	47	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	38	47	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	38	47	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	41	50	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	33	42	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	44	53	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	50	59	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	56	65	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	56	65	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	64	73	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	65	74	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	65	74	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	60	69	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	60	69	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	62	71	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	73	82	+	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	65	74	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	72	81	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	75	84	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	75	84	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	75	84	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	88	97	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
Klf4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	89	98	-	11.4184	5.09e-05	0.0206	GGGGCGCGGC
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	5	17	+	9.09091	5.1e-05	0.258	CGGGGCCCCCCCT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	67	79	+	9.09091	5.1e-05	0.258	CGGGGCCCCCCCT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	3	23	-	9.66129	5.1e-05	0.174	CATAAGTTTCAGTTCTTGTCA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	3	23	-	9.66129	5.1e-05	0.174	CATAAGTTTCAGTTCTTGTCA
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	40	52	-	12.3469	5.1e-05	0.164	GCCAGCTGTGACA
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	40	52	-	12.3469	5.1e-05	0.164	GCCAGCTGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	80	-	11.8367	5.1e-05	0.136	GGCACGTGGCA
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	80	-	11.8367	5.1e-05	0.136	GGCACGTGGCA
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	80	-	11.8367	5.1e-05	0.136	GGCACGTGGCA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	80	-	11.8367	5.1e-05	0.136	GGCACGTGGCA
USF2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	45	+	11.8367	5.1e-05	0.136	GGCACGTGGCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	19	33	+	11.2703	5.1e-05	0.18	GCGGAGCAAAGGGGG
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	79	93	+	11.2703	5.1e-05	0.18	GGGGGGCAGGAGCCA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	22	36	-	11.2703	5.1e-05	0.18	GGGGGGCAGGAGCCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	34	48	-	11.2703	5.1e-05	0.18	CTGGCACAGAGGTGA
NFYB	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	33	47	-	11.2885	5.1e-05	0.157	CTTTTCTCCAATCAG
NFYB	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	68	82	+	11.2885	5.1e-05	0.157	CTTTTCTCCAATCAG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	81	91	+	11.8621	5.1e-05	0.0607	GAGAGGGAGAA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	41	54	-	6.41837	5.1e-05	0.365	GGGCCGAAGGCCAA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	+	10.6897	5.1e-05	0.0554	CCCCTCCCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	+	10.6897	5.1e-05	0.0554	CCCCTCCCGGGCT
SP8	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	48	59	+	11.3289	5.1e-05	0.0301	GCCACTCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	56	67	-	11.3289	5.1e-05	0.0301	GCCACTCCCTCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	56	67	-	11.3289	5.1e-05	0.0301	GCCACTCCCTCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	56	67	-	11.3289	5.1e-05	0.0301	GCCACTCCCTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	56	67	-	11.3289	5.1e-05	0.0301	GCCACTCCCTCC
Gata1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.1.0	98	108	-	11.9184	5.1e-05	1	GTTTTATCTCT
Gata1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.0.0	98	108	-	11.9184	5.1e-05	1	GTTTTATCTCT
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	19	33	+	11.569	5.1e-05	0.692	ACGTTCTGGGGAAAT
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	82	96	-	11.569	5.1e-05	0.692	ACGTTCTGGGGAAAT
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	43	62	+	4.63303	5.1e-05	0.057	GCCACACACACACACACACA
Znf423	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	59	73	+	6.74157	5.1e-05	0.271	AGCGCCTTTGGGGGC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	15	25	+	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	15	25	+	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	15	25	+	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	15	25	+	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	58	68	-	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	58	68	-	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	58	68	-	11.7347	5.1e-05	0.198	CGGTGACTAAG
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	58	68	-	11.7347	5.1e-05	0.198	CGGTGACTAAG
ELF3	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	45	57	-	9.06897	5.1e-05	0.15	AACGGGGAAGTGA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	25	+	11.6909	5.1e-05	0.055	TGCCCGAGGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	35	46	-	11.6909	5.1e-05	0.055	TGCCCTGCGCCA
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	38	49	-	11.6909	5.1e-05	0.055	AGCCCTCAGCCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	66	77	+	11.6909	5.1e-05	0.055	AGCCCTCAGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	69	80	+	11.6909	5.1e-05	0.055	TGCCCTGCGCCA
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	6	18	+	11.3276	5.1e-05	1	AATTTTTGCATAA
HES5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	12	23	-	3.81034	5.1e-05	0.296	CGGCGCGCGCCG
HES5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	92	103	-	3.81034	5.1e-05	0.296	CGGCGCGCGCCG
HES5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	12	23	+	3.81034	5.1e-05	0.296	CGGCGCGCGCCG
HES5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	92	103	+	3.81034	5.1e-05	0.296	CGGCGCGCGCCG
Zfx	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	26	39	-	11.4242	5.1e-05	0.0554	GGCTGTGCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	76	89	+	11.4242	5.1e-05	0.0554	GGCTGTGCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	76	89	+	11.4242	5.1e-05	0.0554	GGCTGTGCGGCCTT
FOXH1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	15	25	-	11.9231	5.1e-05	1	TGGAATAAACA
FOXH1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	90	100	+	11.9231	5.1e-05	1	TGGAATAAACA
ZIC4	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	55	69	-	10.8909	5.1e-05	0.109	CGCCGCCCGCCGCCC
ZBTB7C	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	1	12	+	11.5806	5.1e-05	0.281	GGGACCCCCACC
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	52	63	+	11.5806	5.1e-05	0.281	GGGACCCCCACC
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	52	63	-	11.5806	5.1e-05	0.281	GGGACCCCCACC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	53	64	-	11.5806	5.1e-05	0.281	GCACCCACCGTT
ZBTB7C	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	103	114	-	11.5806	5.1e-05	0.281	GGGACCCCCACC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	80	89	-	11.5051	5.11e-05	0.297	GGGGGTTACC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	80	89	-	11.5051	5.11e-05	0.297	GGGGGTTACC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	80	89	-	11.5051	5.11e-05	0.297	GGGGGTTACC
REL	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	80	89	-	11.5051	5.11e-05	0.297	GGGGGTTACC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	30	+	11.4655	5.11e-05	0.128	GGCAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	30	+	11.4655	5.11e-05	0.128	GGCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	30	+	11.4655	5.11e-05	0.128	GGCAGCTGTG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	30	+	11.4655	5.11e-05	0.128	GGCAGCTGTG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	+	11.6364	5.11e-05	0.0702	CGCCTAGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	+	11.6364	5.11e-05	0.0702	CGCCTAGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	+	11.6364	5.11e-05	0.0702	CGCCGGGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	+	11.6364	5.11e-05	0.0702	CGCCGGGGGCG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	5	19	-	9.06557	5.11e-05	0.0597	CGCCCCGCCCCTCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	21	35	+	9.06557	5.11e-05	0.0597	CGCCCCGCCCTGCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	37	51	-	9.06557	5.11e-05	0.0597	GGCCACACCTAGACG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	37	51	-	9.06557	5.11e-05	0.0597	GGCCACACCTAGACG
Klf12	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	55	69	+	9.06557	5.11e-05	0.0597	GACCGCGCCCCCACG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	46	60	-	9.06557	5.11e-05	0.0597	GACCGCGCCCCCACG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	46	60	-	9.06557	5.11e-05	0.0597	GACCGCGCCCCCACG
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	66	80	-	7.27586	5.11e-05	0.0383	CGCCGCCGCCGCCTC
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	91	104	+	4.77273	5.11e-05	0.379	CACCTCCCAGGAAT
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	91	104	+	4.77273	5.11e-05	0.379	CACCTCCCAGGAAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	96	110	+	8.17105	5.11e-05	0.229	CACATGACGGAGCAT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	96	110	+	8.17105	5.11e-05	0.229	CACATGACGGAGCAT
ATF4	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	18	30	-	10.4098	5.11e-05	0.566	GTGTGACGCCACA
ATF4	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	38	50	+	10.4098	5.11e-05	0.566	GGCTGATGAAACT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	36	45	-	11.8545	5.11e-05	0.721	ATTACGAAAT
CEBPE	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	42	51	-	11.8545	5.11e-05	0.721	GTGACGCAAC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	34	48	-	8.85714	5.11e-05	0.106	TGCCACCCGCCGCCT
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	34	48	-	8.85714	5.11e-05	0.106	TGCCACCCGCCGCCT
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	89	103	-	11.3898	5.11e-05	1	CAGGCAAAAATAAAA
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	89	103	-	11.3898	5.11e-05	1	CAGGCAAAAATAAAA
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	17	33	+	4.83636	5.11e-05	0.0264	AGCGCCGCGCCCCCATT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	17	33	+	4.83636	5.11e-05	0.0264	AGCGCCGCGCCCCCATT
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	58	74	+	4.83636	5.11e-05	0.0264	CTGGCTCCGGCCCCAGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	61	77	-	4.83636	5.11e-05	0.0264	AGCGCCGCGCCCCCATT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	61	77	-	4.83636	5.11e-05	0.0264	AGCGCCGCGCCCCCATT
Hoxd8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	3	19	+	11.3095	5.11e-05	1	TGAATAATTAATGTGCC
Hoxd8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	3	19	+	11.3095	5.11e-05	1	TGAATAATTAATGTGCC
RXRA::VDR	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	16	30	+	6.80734	5.11e-05	1	GGTTCATGGGGGTTG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	6	19	-	6.40816	5.11e-05	0.365	TGGCCTCTTGCCGA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	6	19	-	6.40816	5.11e-05	0.365	TGGCCTCTTGCCGA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	32	41	+	12.4045	5.11e-05	0.973	TTTAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	32	41	+	12.4045	5.11e-05	0.973	TTTAAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	52	61	+	12.4045	5.11e-05	0.973	TTTAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	52	61	+	12.4045	5.11e-05	0.973	TTTAAGGTCA
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	33	48	+	10.7818	5.11e-05	0.039	CCCAGCCCCCGCGATG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	83	-	10.7818	5.11e-05	0.039	CACCGCCCCCCCGGCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	83	-	10.7818	5.11e-05	0.039	CACCGCCCCCCCGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	14	26	+	10.9672	5.11e-05	0.0586	CGCCGCCAGGGGG
CTCF	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	22	40	-	9.34426	5.11e-05	0.118	CGGGCAGGCGGGGGCGGAG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	53	71	-	9.34426	5.11e-05	0.118	CGGGCAGGCGGGGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	53	71	-	9.34426	5.11e-05	0.118	CGGGCAGGCGGGGGCGGAG
CTCF	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	75	93	+	9.34426	5.11e-05	0.118	CGGGCAGGCGGGGGCGGAG
CENPB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	53	67	-	10.9808	5.11e-05	0.848	CCCGGCAGGAACGTA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	53	67	-	10.9808	5.11e-05	0.848	CCCGGCAGGAACGTA
CENPB	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	48	62	+	10.9808	5.11e-05	0.848	CCCGGCAGGAACGTA
Ddit3::Cebpa	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	52	63	-	11.7111	5.12e-05	1	CCGTGAAATCCC
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	11.5862	5.12e-05	1	ACCATATGCA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	99	-	11.6143	5.12e-05	0.213	TGCAGCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	99	-	11.6143	5.12e-05	0.213	TGCAGCTGTT
SPI1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	49	62	-	3.94545	5.12e-05	0.187	AAAAGGAGGAAGGC
ZNF263	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	44	64	-	10.1837	5.12e-05	0.0169	CGAGGAGGCGGTGCTGGGGCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	92	112	-	10.1837	5.12e-05	0.0169	TGAGGATTGGGAGAGAATGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	51	71	+	10.1837	5.12e-05	0.0169	CGAGGAGGCGGTGCTGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	51	71	+	10.1837	5.12e-05	0.0169	CGAGGAGGCGGTGCTGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	65	85	+	10.1837	5.12e-05	0.0169	GGGGCAGCGCGGGCCAGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	65	85	+	10.1837	5.12e-05	0.0169	GGGGCAGCGCGGGCCAGAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	75	95	+	10.1837	5.12e-05	0.0169	GGTGGAGAGTGATATGAAGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	37	47	-	11.6034	5.12e-05	0.0475	GCGCGCGAGAC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	37	47	-	11.6034	5.12e-05	0.0475	GCGCGCGAGAC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	91	103	-	10.8033	5.12e-05	0.0641	CGCCTCCAAGGCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	2	11	-	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	8	17	-	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	11	20	-	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	55	64	-	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	61	70	-	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	61	70	-	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	63	72	-	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	18	27	+	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	43	52	+	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	51	60	+	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	52	61	+	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	60	69	+	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	60	69	+	11.7551	5.12e-05	0.0201	TTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	70	79	+	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	70	79	+	11.7551	5.12e-05	0.0201	CCCACTCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	95	104	+	11.7551	5.12e-05	0.0201	CCCACTCCCT
Gmeb1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	35	51	+	10.9737	5.12e-05	0.626	GCCGTGACGTCACGGGC
Gmeb1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	64	80	-	10.9737	5.12e-05	0.626	GCCGTGACGTCACGGGC
EHF	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	41	52	+	10.8525	5.12e-05	0.126	GTCCAGGAAGTT
EHF	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	63	74	-	10.8525	5.12e-05	0.126	GTCCAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	94	105	-	10.8525	5.12e-05	0.126	GTCCAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	94	105	-	10.8525	5.12e-05	0.126	GTCCAGGAAGTT
TBX20	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	47	57	-	11.2424	5.12e-05	1	TAGGTGTAAGG
TBX20	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	58	68	+	11.2424	5.12e-05	1	TAGGTGTAAGG
EBF1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	69	82	+	9.83607	5.12e-05	0.365	CTTCTCTGGGGACT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	4	17	-	10.8654	5.12e-05	0.0212	AGCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	4	17	-	10.8654	5.12e-05	0.0212	AGCCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	20	33	+	10.8654	5.12e-05	0.0212	GGCCCGCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	15	28	-	10.8654	5.12e-05	0.0212	TCCACACCTCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	15	28	-	10.8654	5.12e-05	0.0212	TCCACACCTCCTCA
EGR1	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	21	34	-	10.8654	5.12e-05	0.0212	CCTCCACCGCCTTC
EGR1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	39	52	+	10.8654	5.12e-05	0.0212	AGCCCGCCCCTTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	35	48	-	10.8654	5.12e-05	0.0212	GGCCCGCCTCTGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	39	52	-	10.8654	5.12e-05	0.0212	CAGCTTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	63	76	+	10.8654	5.12e-05	0.0212	CAGCTTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	63	76	+	10.8654	5.12e-05	0.0212	CAGCTTCCCCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	63	76	+	10.8654	5.12e-05	0.0212	CAGCTTCCCCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	63	76	+	10.8654	5.12e-05	0.0212	CAGCTTCCCCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	67	80	+	10.8654	5.12e-05	0.0212	GGCCCGCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	63	76	-	10.8654	5.12e-05	0.0212	AGCCCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	63	76	-	10.8654	5.12e-05	0.0212	AGCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	81	94	+	10.8654	5.12e-05	0.0212	CCTCCACCGCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	81	94	+	10.8654	5.12e-05	0.0212	CCTCCACCGCCTTC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	56	69	-	11.3065	5.12e-05	0.411	CTTCCTGAACACCA
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	56	69	-	11.3065	5.12e-05	0.411	CTTCCTGAACACCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	56	69	-	11.3065	5.12e-05	0.411	CTTCCTGAACACCA
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	56	69	-	11.3065	5.12e-05	0.411	CTTCCTGAACACCA
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	12	25	+	9.27273	5.12e-05	0.291	AGGCCACGTGACAG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	+	10.6724	5.12e-05	0.0554	AGCCTCAGGGGGT
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	-	10.6724	5.12e-05	0.0554	AGCCTGCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	+	10.6724	5.12e-05	0.0554	GCCCCCAGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	+	10.6724	5.12e-05	0.0554	GCCCCCAGGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	+	10.6724	5.12e-05	0.0554	GCCCCCAGGGGGG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	-	10.6724	5.12e-05	0.0554	GCCCCCAGGGGGG
GRHL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	84	95	+	11.2586	5.13e-05	1	GCAACCGGTTTC
GRHL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	84	95	+	11.2586	5.13e-05	1	GCAACCGGTTTC
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	60	70	-	11.9388	5.13e-05	0.788	ATTGCAACACT
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	60	70	-	11.9388	5.13e-05	0.788	ATTGCAACACT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	4	18	-	11.2613	5.13e-05	0.18	CTAGGCCAAAGAGCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	4	18	-	11.2613	5.13e-05	0.18	CTAGGCCAAAGAGCT
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	72	86	-	11.2613	5.13e-05	0.18	GAAGGGTAAAAGGCA
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	10	21	+	11.2576	5.13e-05	0.109	CAACGTGCGCCT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	10	21	+	11.2576	5.13e-05	0.109	CAACGTGCGCCT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	10	21	+	11.2576	5.13e-05	0.109	CAACGTGCGCCT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	10	21	+	11.2576	5.13e-05	0.109	CAACGTGCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	23	34	+	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	23	34	+	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
HINFP	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	32	43	+	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	24	35	-	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
HINFP	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	67	78	+	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
HINFP	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	81	92	-	11.2576	5.13e-05	0.109	GCGCGTGCGCGG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	83	-	11.1475	5.13e-05	0.158	GAACGGAAGTA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	83	-	11.1475	5.13e-05	0.158	GAACGGAAGTA
SP2	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	14	28	+	11	5.13e-05	0.0123	TCCCCGCCTTGCCGT
SP2	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	54	68	+	11	5.13e-05	0.0123	CGCCCTCCCTCCAGC
SP2	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	55	69	+	11	5.13e-05	0.0123	TCCCCGCCTTGCCGT
SP2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	57	71	+	11	5.13e-05	0.0123	CGCCCGCCCTACTGC
SP2	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	64	78	+	11	5.13e-05	0.0123	GACCCTCCCCTTGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	76	90	+	11	5.13e-05	0.0123	CCCCCTCCCAGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	76	90	+	11	5.13e-05	0.0123	CCCCCTCCCAGCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	14	28	-	11	5.13e-05	0.0123	GCCGCGCCCCCAACC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	14	28	-	11	5.13e-05	0.0123	GCCGCGCCCCCAACC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	37	51	-	11	5.13e-05	0.0123	GACCCTCCCCTTGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	37	51	-	11	5.13e-05	0.0123	GACCCTCCCCTTGAC
SP2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	44	58	-	11	5.13e-05	0.0123	CGCCCGCCCTACTGC
SP2	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	46	60	-	11	5.13e-05	0.0123	TCCCCGCCTTGCCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	47	61	-	11	5.13e-05	0.0123	CGCCCTCCCTCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	47	61	-	11	5.13e-05	0.0123	CGCCCTCCCTCCAGC
SP2	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	87	101	-	11	5.13e-05	0.0123	TCCCCGCCTTGCCGT
ZBTB18	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	22	34	+	10.3714	5.13e-05	0.729	TATGCAGATGTCT
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	+	11.9057	5.13e-05	1	TGTTACGTCACA
Myog	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	25	35	+	12.3673	5.13e-05	0.145	GACAGCTGATT
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	45	55	+	12.3673	5.13e-05	0.145	GGCAGGTGGCG
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	45	55	+	12.3673	5.13e-05	0.145	GGCAGGTGGCG
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	45	55	+	12.3673	5.13e-05	0.145	GGCAGGTGGCG
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	45	55	+	12.3673	5.13e-05	0.145	GGCAGGTGGCG
Myog	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	60	70	-	12.3673	5.13e-05	0.145	GGCAGGTGGCG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	107	-	12.3673	5.13e-05	0.145	GACAGCTGTTA
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	69	89	+	9.64516	5.13e-05	0.174	CTCCTCTTTCTGTTCCTGGCT
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	69	89	+	9.64516	5.13e-05	0.174	CTCCTCTTTCTGTTCCTGGCT
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	69	89	+	9.64516	5.13e-05	0.174	CTCCTCTTTCTGTTCCTGGCT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	69	89	+	9.64516	5.13e-05	0.174	CTCCTCTTTCTGTTCCTGGCT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	11	30	+	4.61468	5.13e-05	0.0572	CCACGCCCCGCCCGCCCCGG
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	20	30	+	11.7414	5.13e-05	0.521	AAACCACAGTT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	20	30	+	11.7414	5.13e-05	0.521	AAACCACAGTT
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	25	37	-	11.8163	5.13e-05	0.427	AAAAGGTCAACCC
Alx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	3	19	+	11.6104	5.13e-05	1	TCAATTAATTAAGAGCT
Alx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	3	19	+	11.6104	5.13e-05	1	TCAATTAATTAAGAGCT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	83	93	+	11.7818	5.13e-05	0.0527	CCCCTGCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	83	93	+	11.7818	5.13e-05	0.0527	CGCCTCCAGCT
SPIC	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	72	85	+	11.3239	5.13e-05	0.25	AGAAAGAGGAAATG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	22	36	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	22	36	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	22	36	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	22	36	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	22	36	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	54	68	+	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	47	61	-	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	47	61	-	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	47	61	-	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
HNF4G	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	79	93	-	11.25	5.13e-05	0.335	AAAGGTCGAAGTTCA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	-	11.6923	5.13e-05	0.0744	CGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	+	11.6923	5.13e-05	0.0744	CGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	+	11.6923	5.13e-05	0.0744	CGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	+	11.6923	5.13e-05	0.0744	CGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	+	11.6923	5.13e-05	0.0744	CGCCGGCGGCT
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	20	31	-	11.2581	5.13e-05	1	ATATGAAAATGT
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	4	18	-	-1.38182	5.13e-05	0.545	CCCGGAAATGAAACC
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	4	18	-	-1.38182	5.13e-05	0.545	CCCGGAAATGAAACC
NR3C2	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	63	79	-	6.06383	5.13e-05	0.952	GAGAACTTCAAGTTCCA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	22	36	+	10.9273	5.13e-05	0.312	CGTAAGTGAAACTTA
PRDM1	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	79	93	-	10.9273	5.13e-05	0.312	CGTAAGTGAAACTTA
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	97	109	+	11.31	5.13e-05	1	ATTTTGCAAATGA
Myb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	23	32	-	12.1803	5.13e-05	0.905	CCAGCTGTCA
Myb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	23	32	-	12.1803	5.13e-05	0.905	CCAGCTGTCA
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	12	22	+	11.3455	5.14e-05	0.19	GGGTGACTAAC
FOSL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	12	22	+	11.3455	5.14e-05	0.19	GGGTGACTAAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	8	17	-	12.3443	5.14e-05	0.333	TCCACGTGCA
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	8	17	-	12.3443	5.14e-05	0.333	TCCACGTGCA
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	90	99	-	12.3443	5.14e-05	0.333	TCCACGTGCA
EGR3	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	18	32	-	7.25862	5.14e-05	0.0383	CAACCCCCACCCGCC
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	33	47	-	10.0143	5.14e-05	0.122	ACGGTGGAGGGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	79	93	-	10.0143	5.14e-05	0.122	CGCGGTCAAAGAGCG
Nr2f6	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	83	96	-	9.31818	5.14e-05	0.348	GGGATTAAAGGTCT
Nr2f6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	32	+	9.31818	5.14e-05	0.348	GGGATTAAAGGTCT
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	32	+	9.31818	5.14e-05	0.348	GGGATTAAAGGTCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	63	79	-	4.81818	5.14e-05	0.0265	CCCGCCCCGCCCGCCAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	63	79	-	4.81818	5.14e-05	0.0265	CCCGCCCCGCCCGCCAG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	+	11.5918	5.14e-05	0.0857	CGGCCCCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	+	11.5918	5.14e-05	0.0857	CGGCCCCGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	-	11.5918	5.14e-05	0.0857	CGGCCCCGGGCG
TFAP2C	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	+	11.5918	5.14e-05	0.0857	CGGCCCCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	85	96	+	11.5918	5.14e-05	0.0857	AGGCCCAGGGCG
Tcf12	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	13	-	12.3673	5.14e-05	0.169	GACAGGTGCCC
Tcf12	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	112	+	12.3673	5.14e-05	0.169	GACAGGTGCCC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	80	94	-	8.84286	5.14e-05	0.106	GGCTCCCCGCAGATT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	80	94	-	8.84286	5.14e-05	0.106	GGCTCCCCGCAGATT
SP3	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	1	11	+	11.4553	5.14e-05	0.0199	GCCGCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	38	48	+	11.4553	5.14e-05	0.0199	AACACTCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	74	84	-	11.4553	5.14e-05	0.0199	ACACCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	74	84	-	11.4553	5.14e-05	0.0199	ACACCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	92	102	-	11.4553	5.14e-05	0.0199	AACACTCCCAC
TFEB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	8	17	-	11.9038	5.14e-05	0.147	GCCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	8	17	-	11.9038	5.14e-05	0.147	GCCATGTGAC
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	36	49	-	1.78182	5.14e-05	0.505	AAAGTCAAAGTTTG
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	36	49	-	1.78182	5.14e-05	0.505	AAAGTCAAAGTTTG
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	79	92	-	1.78182	5.14e-05	0.505	AGGGTTAAAGTCCG
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	79	92	-	1.78182	5.14e-05	0.505	AGGGTTAAAGTCCG
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	79	92	-	1.78182	5.14e-05	0.505	AGGGTTAAAGTCCG
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	79	92	-	1.78182	5.14e-05	0.505	AGGGTTAAAGTCCG
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	60	73	+	1.78182	5.14e-05	0.505	AAAGTCAAAGTTTG
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	60	73	+	1.78182	5.14e-05	0.505	AAAGTCAAAGTTTG
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	36	50	+	11.2115	5.14e-05	0.426	AGGTCATCCTCCCTC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	56	70	+	11.2115	5.14e-05	0.426	AGGTCATCCTCCCTC
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	26	35	-	11.9423	5.14e-05	1	CCCACTTCAC
CREB3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	7	20	-	10.3571	5.14e-05	0.252	GCGCCACGTGGCCG
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	7	20	-	10.3571	5.14e-05	0.252	GCGCCACGTGGCCG
CREB3	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	95	108	+	10.3571	5.14e-05	0.252	GCGCCACGTGGCCG
HLTF	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	25	34	-	8.76829	5.14e-05	1	AACCTTAGCT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	78	92	-	10.8636	5.14e-05	0.107	GCCTCGCGTGACTGA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	52	66	+	10.8636	5.14e-05	0.107	TCCCCGCGGGCGTTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	52	66	+	10.8636	5.14e-05	0.107	TCCCCGCGGGCGTTC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	75	89	+	10.8636	5.14e-05	0.107	GTCGCGCGAGCTCCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	75	89	+	10.8636	5.14e-05	0.107	GTCGCGCGAGCTCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	20	30	+	11.5192	5.14e-05	0.0142	ATCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	37	47	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	37	47	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	37	47	+	11.5192	5.14e-05	0.0142	CTCCCTCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	44	54	-	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	56	66	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	56	66	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	56	66	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	56	66	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	56	66	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	49	59	-	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
SP1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	61	71	+	11.5192	5.14e-05	0.0142	GTCCCGCCCAG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	10	22	+	9.06061	5.14e-05	0.258	GAGGGCATCCCCG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	10	22	+	9.06061	5.14e-05	0.258	GAGGGCATCCCCG
HOXC12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	27	37	-	11.3818	5.14e-05	1	GCTCGTAAAGA
HOXC12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	47	57	-	11.3818	5.14e-05	1	GCTCGTAAAGA
HOXC12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	75	85	-	11.3818	5.14e-05	1	GCTCGTAAAGA
TBX2	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	37	47	-	11.4909	5.14e-05	1	TAAGTGTGAAG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	47	57	-	11.4909	5.14e-05	1	TAAGTGTGAAG
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	47	57	-	11.4909	5.14e-05	1	TAAGTGTGAAG
TBX2	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	58	68	+	11.4909	5.14e-05	1	TAAGTGTGAAG
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	68	78	+	11.4909	5.14e-05	1	TAAGTGTGAAG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	68	78	+	11.4909	5.14e-05	1	TAAGTGTGAAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	37	51	+	11.2692	5.14e-05	0.157	ATGGTGGCCAATCGC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	37	51	+	11.2692	5.14e-05	0.157	ATGGTGGCCAATCGC
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	2	11	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	2	11	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	9	18	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	31	40	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	40	49	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	33	42	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	63	72	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	73	82	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	66	75	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	66	75	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	97	106	+	11.5775	5.14e-05	0.127	GTCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	104	113	-	11.5775	5.14e-05	0.127	GTCGGAAGTG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	6	16	+	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	6	16	+	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	62	72	+	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	70	80	+	11.0517	5.14e-05	0.0191	GCCACTCCCCA
KLF16	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	80	90	+	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	14	24	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	14	24	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	25	35	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	25	35	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	35	45	-	11.0517	5.14e-05	0.0191	GCCACTCCCCA
KLF16	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	43	53	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	99	109	-	11.0517	5.14e-05	0.0191	CCCACTCCTCC
TP53	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	44	61	+	7.30612	5.14e-05	0.979	GACGAGTTCGGGCTCGTC
TP53	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	54	71	-	7.30612	5.14e-05	0.979	GACGAGTTCGGGCTCGTC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	+	9.77419	5.14e-05	0.965	ACTAATATTAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	+	9.77419	5.14e-05	0.965	ACTAATATTAGC
TCF3	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	16	25	+	12.6731	5.15e-05	0.404	GACACCTGCT
TCF3	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	99	-	12.6731	5.15e-05	0.404	GACACCTGCT
GATA1::TAL1	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	35	52	+	11.3818	5.15e-05	0.93	ACTATCTTGATGCAACAC
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	88	99	+	4.06557	5.15e-05	0.598	TGACAGCCGTCC
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	88	99	+	4.06557	5.15e-05	0.598	TGACAGCCGTCC
EGR2	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	56	-	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	59	69	+	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	59	69	+	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	59	69	+	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	59	69	+	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	59	69	+	10.1207	5.15e-05	0.0818	CCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	-	10.9508	5.15e-05	0.0586	CGCCCCCGCGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	+	10.9508	5.15e-05	0.0586	CGCCCCCGCGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	+	10.9508	5.15e-05	0.0586	CGCCCCCGCGGCC
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	47	62	+	2.58621	5.15e-05	0.337	TTCCCGCCGTTCACTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	47	62	+	2.58621	5.15e-05	0.337	TTCCCGCCGTTCACTG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	47	62	+	2.58621	5.15e-05	0.337	TTCCCGCCGTTCACTG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	47	62	+	2.58621	5.15e-05	0.337	TTCCCGCCGTTCACTG
HES5	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	49	60	-	3.77586	5.15e-05	0.296	CAGCAAGTGCCC
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	96	107	+	3.77586	5.15e-05	0.296	CAGCATGTGCCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	96	107	+	3.77586	5.15e-05	0.296	CAGCATGTGCCC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	25	38	+	6.45918	5.15e-05	0.0719	GGGGGCCGGAGGTG
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	81	99	+	11.0968	5.15e-05	0.673	GGCCCAACAGTGACCCTGT
Mecom	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	69	82	-	9.24719	5.15e-05	1	CAGATAAGACCAAG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	31	44	+	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	31	44	+	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	20	33	-	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	39	-	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	48	-	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	48	-	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	55	68	+	8.90164	5.15e-05	0.185	GCCCCCCCCCCGCG
GLIS2	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	76	89	+	8.90164	5.15e-05	0.185	CCCCCCCCGCCCCG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	44	61	+	9.82927	5.15e-05	0.153	ACGTTTCCCATTGGCCGC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	9	19	+	11.3273	5.15e-05	0.19	GGCTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	9	19	+	11.3273	5.15e-05	0.19	GGCTGACTCAG
NFE2	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	+	6.46939	5.15e-05	0.293	TATGAGTCACA
ZIC1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	6	19	-	7.17021	5.15e-05	0.0995	TCCCCCGCGCGGTG
ZIC1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	92	105	+	7.17021	5.15e-05	0.0995	AGCACCCTGCTGTC
KLF14	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	56	69	+	9.5	5.15e-05	0.0334	GGCTCCTCCCCCTT
KLF14	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	46	59	-	9.5	5.15e-05	0.0334	GGCTCCTCCCCCTT
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	80	90	-	9.18966	5.15e-05	1	CGAAGGTCAGT
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	80	90	-	9.18966	5.15e-05	1	CGAAGGTCAGT
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	80	90	-	9.18966	5.15e-05	1	CGAAGGTCAGT
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	80	90	-	9.18966	5.15e-05	1	CGAAGGTCAGT
EVX2	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	66	75	-	10.5	5.15e-05	1	CCTGATTAGC
CREB3L1	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	6	19	+	9.25758	5.15e-05	0.291	CCGCCACGGCAGCC
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	96	109	-	9.25758	5.15e-05	0.291	CCGCCACGGCAGCC
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	96	109	-	9.25758	5.15e-05	0.291	CCGCCACGGCAGCC
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	96	109	-	9.25758	5.15e-05	0.291	CCGCCACGGCAGCC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	3	14	-	11.1724	5.15e-05	0.365	ACGCCCCCCGCG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	-	11.4364	5.15e-05	0.202	ACTGACTCATT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	+	11.4364	5.15e-05	0.202	ACTGACTCATT
YY2	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	7	17	-	11.6818	5.15e-05	0.312	TGTCGCCATTT
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	10.1469	5.15e-05	0.094	CGCACGTGGC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	10.1469	5.15e-05	0.094	CGCACGTGGC
Foxk1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	69	85	+	11.1948	5.15e-05	1	CGGAAGTAAACATTACG
Foxk1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	69	85	+	11.1948	5.15e-05	1	CGGAAGTAAACATTACG
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	17	30	+	6.37755	5.16e-05	0.365	TGGAAGTGAGCCAT
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	71	80	-	11.4545	5.16e-05	0.297	CGGGCGTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	71	80	-	11.4545	5.16e-05	0.297	CGGGCGTTCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	66	80	+	11.2523	5.16e-05	0.18	CGGTGTGAAGGGTCA
NFATC3	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	74	83	+	11.1919	5.16e-05	0.908	TTTTTCCACA
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	12	21	+	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	50	59	-	10.6748	5.16e-05	0.956	TATTTCCATT
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	36	45	+	11.3455	5.16e-05	1	CAAGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	36	45	+	11.3455	5.16e-05	1	CAAGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	36	45	+	11.3455	5.16e-05	1	CAAGTGTGAA
TBX21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	36	45	+	11.3455	5.16e-05	1	CAAGTGTGAA
TBX21	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	83	92	-	11.3455	5.16e-05	1	TAGGTGAGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	103	112	-	11.3455	5.16e-05	1	CAAGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	103	112	-	11.3455	5.16e-05	1	CAAGTGTGAA
TBP	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	10	24	-	11.4306	5.16e-05	0.56	GTTTATAAGGGGGCG
TGIF2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	-	8.78899	5.16e-05	0.848	TGGCAGCTGCCT
TGIF2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	+	8.78899	5.16e-05	0.848	TGGCAGCTGCCT
Sox6	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	58	67	+	12.4143	5.16e-05	0.754	CCTTTGTTTG
EBF1	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	63	76	-	9.81967	5.16e-05	0.365	GGCCCCATGAGACC
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	20	30	-	11.6727	5.16e-05	0.139	ACGAGGAAATG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	46	56	-	11.6727	5.16e-05	0.139	ACGGGGAAGTG
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	77	89	-	11.2951	5.16e-05	0.359	TTGTCTCTCTGCT
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	78	89	+	11.2424	5.16e-05	0.109	CTGGGTCCGCCA
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	78	89	+	11.2424	5.16e-05	0.109	CTGGGTCCGCCA
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	78	89	+	11.2424	5.16e-05	0.109	CTGGGTCCGCCA
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	78	89	+	11.2424	5.16e-05	0.109	CTGGGTCCGCCA
ZIC4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	12	26	-	10.8727	5.16e-05	0.109	CCCCCCCCGCAGTAC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	50	64	+	10.8727	5.16e-05	0.109	GCAACCCCGCGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	50	64	+	10.8727	5.16e-05	0.109	GCAACCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	50	64	+	10.8727	5.16e-05	0.109	GCAACCCCGCGGCGG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	89	103	+	10.8727	5.16e-05	0.109	CCCCCCCCGCAGTAC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	4	16	-	3.2449	5.16e-05	0.248	AGGGGGAATCCCG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	4	16	-	3.2449	5.16e-05	0.248	AGGGGGAATCCCG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	8	20	-	3.2449	5.16e-05	0.248	TGGTGGATCACCA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	74	87	-	6.44898	5.16e-05	0.0719	GGGGCTCTGAGCGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	83	102	+	4.59633	5.16e-05	0.0574	CACGCACGCACCCACCCCAC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	+	11.6727	5.16e-05	0.055	GGCCCCGAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	+	11.6727	5.16e-05	0.055	GGCCCCGAGGCT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	-	11.6727	5.16e-05	0.055	CGCCCGGCGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	-	11.6727	5.16e-05	0.055	GGCCCCGAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	-	11.6727	5.16e-05	0.055	GGCCCCGAGGCT
HOXD11	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	26	35	+	11.9014	5.16e-05	1	GTTGTAAAAA
HOXD11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	26	35	+	11.9014	5.16e-05	1	GTTGTAAAAA
HOXD11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	26	35	+	11.9014	5.16e-05	1	GTTGTAAAAA
HOXD11	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	26	35	+	11.9014	5.16e-05	1	GTTGTAAAAA
HOXD11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	26	35	+	11.9014	5.16e-05	1	GTTGTAAAAA
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	89	100	+	10.9138	5.16e-05	0.33	GTGACCACGAAG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	63	73	+	10.7091	5.16e-05	0.0185	GAGCTGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	60	70	-	10.7091	5.16e-05	0.0185	ACCCGTGCGCG
EGR4	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	5	20	+	10.7636	5.16e-05	0.039	CCCCGCCCCTGCAGGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	17	32	+	10.7636	5.16e-05	0.039	CCCCGCCCCTGCCTCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	17	32	+	10.7636	5.16e-05	0.039	CCCCGCCCCTGCCTCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	16	31	-	10.7636	5.16e-05	0.039	CCCCGCCCCCCGAACG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	16	31	-	10.7636	5.16e-05	0.039	CCCCGCCCCCCGAACG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	16	31	-	10.7636	5.16e-05	0.039	CCCCGCCCCCCGAACG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	16	31	-	10.7636	5.16e-05	0.039	CCCCGCCCCCCGAACG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	71	86	+	10.7636	5.16e-05	0.039	GGCCTCCCCCGCAGCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	95	110	-	10.7636	5.16e-05	0.039	CCCCGCCCCTGCAGGA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	95	110	-	10.7636	5.16e-05	0.039	CCCCGCCCCTGCAGGA
SP4	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	11	27	+	4.8	5.16e-05	0.0266	TACTCCCCTCCCCCTCC
SP4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	23	39	+	4.8	5.16e-05	0.0266	GGGACCCCTCCCCCCAG
SP4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	76	92	-	4.8	5.16e-05	0.0266	GGGACCCCTCCCCCCAG
MTF1	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	38	51	+	7.03659	5.16e-05	0.5	GCTGCACACGTTCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	21	37	+	-1.24242	5.16e-05	0.845	ACGTCATGGGAACTTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	21	37	+	-1.24242	5.16e-05	0.845	ACGTCATGGGAACTTCA
BCL6B	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	17	33	-	-15.0857	5.16e-05	0.94	GCCTTTCCAGGGATTGG
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	8	15	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	6	13	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	6	13	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	8	15	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	9	16	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	9	16	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	14	21	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	34	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	27	34	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	27	34	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	31	38	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	33	40	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	33	40	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	33	40	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	36	43	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	52	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	52	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	52	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	56	63	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	52	59	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	52	59	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	65	72	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	61	68	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	62	69	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	62	69	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	63	70	-	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	77	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	79	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	79	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	79	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	79	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	94	101	+	11.4079	5.16e-05	0.388	CCACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	91	98	-	11.4079	5.16e-05	0.388	CCACGTGC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	35	46	-	11.5645	5.16e-05	0.281	CGGACCACCCAC
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	56	67	+	11.5645	5.16e-05	0.281	GCAACCCCCTAC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	60	71	+	11.5645	5.16e-05	0.281	CGGACCACCCAC
MYBL1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	61	72	+	10.569	5.17e-05	1	TCGGTTAACCCC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	78	92	+	8.82857	5.17e-05	0.106	GCCTCCCTCCCGCGC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	23	37	-	8.82857	5.17e-05	0.106	GCCTCCCTCCCGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	23	37	-	8.82857	5.17e-05	0.106	GCCTCCCTCCCGCGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	67	77	-	11.459	5.17e-05	0.0585	CAGGAAGCGCA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	23	37	+	10	5.17e-05	0.122	GGGGGGGAGGGGTAG
ETS1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	38	47	+	11.8276	5.17e-05	0.107	ACAGGAAATA
ETS1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	11.8276	5.17e-05	0.107	ACCGGAAGAG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	11.8276	5.17e-05	0.107	ACCGGAAGAG
ETS1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	68	77	-	11.8276	5.17e-05	0.107	ACAGGAAATA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	44	57	-	10.8462	5.17e-05	0.0214	AGCCCTCTCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	44	57	-	10.8462	5.17e-05	0.0214	AGCCCTCTCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	7	18	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	7	18	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	3	14	-	11.3158	5.17e-05	0.0301	TCCCCTCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	17	28	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	17	28	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	20	31	+	11.3158	5.17e-05	0.0301	TCCCCTCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	20	31	+	11.3158	5.17e-05	0.0301	TCCCCTCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	24	35	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	25	36	-	11.3158	5.17e-05	0.0301	CCCCCACCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	39	50	+	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	46	57	-	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	46	57	-	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	49	60	-	11.3158	5.17e-05	0.0301	ACCCCTCCCCTC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	65	76	-	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
SP8	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	90	+	11.3158	5.17e-05	0.0301	CCCCCACCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	82	93	+	11.3158	5.17e-05	0.0301	TCCCCTCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	80	91	-	11.3158	5.17e-05	0.0301	TCCCCGCCCCTC
E2F6	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	83	93	-	11.8276	5.17e-05	0.0613	AGGTGGGAGGG
E2F6	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	22	32	+	11.8276	5.17e-05	0.0613	AGGTGGGAGGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	38	52	-	9.03279	5.17e-05	0.0601	TGCCCCGCCCAGGGC
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	29	38	+	11.4483	5.17e-05	0.128	CCCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	29	38	+	11.4483	5.17e-05	0.128	CCCAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	79	88	-	11.4483	5.17e-05	0.128	CCCAGCTGTG
NHLH1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	79	88	-	11.4483	5.17e-05	0.128	CCCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	79	88	-	11.4483	5.17e-05	0.128	CCCAGCTGTG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	81	90	-	11.4483	5.17e-05	0.128	CCCAGCTGTG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	+	7.41379	5.17e-05	0.281	CGGTATCCTGGCAACG
RFX5	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	-	7.41379	5.17e-05	0.281	CGGTATCCTGGCAACG
Klf4	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	37	46	+	11.3367	5.17e-05	0.0207	TGGGAGTGGT
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	28	45	+	-12.2237	5.17e-05	0.0462	GGAACTTGGGAAGGAACG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	70	87	-	-12.2237	5.17e-05	0.0462	GGAACTTGGGAAGGAACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	70	87	-	-12.2237	5.17e-05	0.0462	GGAACTTGGGAAGGAACG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ELK3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	11.6897	5.17e-05	0.112	CCCGGAAGCA
ZEB1	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	32	40	+	12.1273	5.17e-05	0.383	GTTCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	22	30	-	12.1273	5.17e-05	0.383	GTTCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	22	30	-	12.1273	5.17e-05	0.383	GTTCACCTG
PAX5	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	38	56	+	11.0161	5.17e-05	0.147	GGACCCAGTGGACCGCAGC
PAX5	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	59	77	-	11.0161	5.17e-05	0.147	GGACCCAGTGGACCGCAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	37	57	-	10.1633	5.17e-05	0.017	GGAAGAAGGAGACGAAGGGAC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	37	57	-	10.1633	5.17e-05	0.017	GGAAGAAGGAGACGAAGGGAC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	71	91	-	10.1633	5.17e-05	0.017	GGGAGAACAGGGAAGAGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	71	91	-	10.1633	5.17e-05	0.017	GGGAGAACAGGGAAGAGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	15	35	+	10.1633	5.17e-05	0.017	GGTGGAGCCGGGGCAGGGCGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	15	35	+	10.1633	5.17e-05	0.017	GGTGGAGCCGGGGCAGGGCGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	15	35	+	10.1633	5.17e-05	0.017	GGTGGAGCCGGGGCAGGGCGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	15	35	+	10.1633	5.17e-05	0.017	GGTGGAGCCGGGGCAGGGCGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	59	79	+	10.1633	5.17e-05	0.017	AAGTGAGTGAGAAGAGGTGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	91	111	+	10.1633	5.17e-05	0.017	GGAGAGCGGGAAGAAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	91	111	+	10.1633	5.17e-05	0.017	GGAGAGCGGGAAGAAGGAGGA
IRF8	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	49	62	+	-1.10909	5.17e-05	0.732	GCGGAACTGAAAGC
YY1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	42	53	+	11.1923	5.17e-05	0.253	AAAGATGGTGTC
YY1	WILDTYPE__Enhancer.noflip.NA__chr1:158146798..158146912,-__2027.1.0.0	44	55	+	11.1923	5.17e-05	0.253	AAAGATGGTGTC
IRF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	50	67	+	6.08257	5.17e-05	0.626	TAAAAGGGAAAGCGTGCT
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	30	44	-	11.5493	5.17e-05	0.341	GAAAGGAAAAAAAAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	30	44	-	11.5493	5.17e-05	0.341	GAAAGGAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	30	44	-	11.5493	5.17e-05	0.341	GAAAGGAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	30	44	-	11.5493	5.17e-05	0.341	GAAAGGAAAAAAAAA
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	29	40	-	7.59184	5.17e-05	0.175	AATGACGCCACA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	75	86	+	7.59184	5.17e-05	0.175	AATGACGCCACA
SRY	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	4	12	-	11.0333	5.17e-05	1	GATAACAAT
SRY	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	4	12	-	11.0333	5.17e-05	1	GATAACAAT
SRY	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	4	12	-	11.0333	5.17e-05	1	GATAACAAT
SRY	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	4	12	-	11.0333	5.17e-05	1	GATAACAAT
SP2	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	5	19	+	10.9828	5.17e-05	0.0124	TTCCCTCCCTCCTCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	43	57	+	10.9828	5.17e-05	0.0124	GCTCCGCTCCTCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	43	57	+	10.9828	5.17e-05	0.0124	GCTCCGCTCCTCGCG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	11	25	-	10.9828	5.17e-05	0.0124	GCTCCGCTCCCTCTG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	11	25	-	10.9828	5.17e-05	0.0124	GCTCCGCTCCCTCTG
SP2	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	16	30	-	10.9828	5.17e-05	0.0124	CCTCCTCCCACCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	98	112	-	10.9828	5.17e-05	0.0124	TGACCGCCTCCTTCC
ELF3	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	53	65	+	9.03448	5.17e-05	0.151	AAGCAGGAAGGAA
ELF3	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	57	69	+	9.03448	5.17e-05	0.151	TTCACGGAAATGA
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	37	56	+	4.58716	5.17e-05	0.0574	CGCGCACACACACACACACC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	37	56	+	4.58716	5.17e-05	0.0574	CGCGCACACACACACACACC
E2F1	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	41	52	-	11.4754	5.17e-05	0.41	ATAGCCGCCAAA
E2F1	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	63	74	+	11.4754	5.17e-05	0.41	ATAGCCGCCAAA
E2F1	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	95	106	-	11.4754	5.17e-05	0.41	ATAGCCGCCAAA
TCF7L2	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	56	69	-	11.6182	5.18e-05	1	CCTCTTCAAAGGAG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	-	10.9344	5.18e-05	0.0586	CGCCCCCCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	-	10.9344	5.18e-05	0.0586	CGCCCCCCAGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	+	10.9344	5.18e-05	0.0586	CGCCCCCCAGGCC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	+	10.5862	5.18e-05	0.249	ATCACGAGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	+	10.5862	5.18e-05	0.249	ATCACGAGAT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	82	92	-	11.569	5.18e-05	0.0475	GCGCGCGAACC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	82	92	-	11.569	5.18e-05	0.0475	GCGCGCGAACC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	82	92	-	11.569	5.18e-05	0.0475	GCGCGCGAACC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	82	92	-	11.569	5.18e-05	0.0475	GCGCGCGAACC
Zfx	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	40	53	+	11.3939	5.18e-05	0.056	TAGAGCCCGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	62	75	-	11.3939	5.18e-05	0.056	TAGAGCCCGGCCTC
GSX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	9.75472	5.18e-05	1	TCCAATTAAC
GSX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	9.75472	5.18e-05	1	TCCAATTAAC
ZNF740	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	41	50	+	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	94	103	+	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	12	21	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	12	21	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	12	21	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	12	21	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	33	42	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	65	74	-	11.1376	5.18e-05	0.0548	GCCCCCACAC
NR2F1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	51	63	-	11.7959	5.18e-05	0.427	TCAGGGTCAGGAG
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	47	57	+	11.9038	5.18e-05	0.362	TCAATGACTCA
PAX9	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	36	52	+	1.67273	5.18e-05	0.501	GGTCCCGCCTCGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	6	16	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	6	16	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	6	16	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	6	16	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	6	16	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	10	20	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	10	20	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	15	25	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	21	31	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	52	62	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	52	62	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	75	85	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	93	103	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	100	110	+	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	5	15	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	5	15	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	5	15	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	5	15	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	7	17	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	10	20	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	12	22	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	43	53	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	43	53	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	43	53	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	43	53	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	53	63	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	53	63	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	84	94	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	99	109	-	11.4472	5.18e-05	0.0199	GCTCCGCCCCC
RUNX2	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	103	111	-	11.7885	5.18e-05	0.442	CAACCGCAG
PROP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	8	18	+	11.2836	5.18e-05	1	CAATCAAATTA
PROP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	8	18	+	11.2836	5.18e-05	1	CAATCAAATTA
PROP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	8	18	+	11.2836	5.18e-05	1	CAATCAAATTA
PROP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	8	18	+	11.2836	5.18e-05	1	CAATCAAATTA
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	14	29	+	-3.01724	5.18e-05	0.983	AGAGGTCAGAGGGCCG
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	14	29	+	-3.01724	5.18e-05	0.983	AGAGGTCAGAGGGCCG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	12	22	-	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	12	22	-	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	12	22	-	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	12	22	-	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	19	29	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	19	29	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	102	112	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	102	112	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	102	112	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TBX20	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	102	112	+	11.2121	5.18e-05	1	GAGGTGTGGAG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	+	10.6379	5.18e-05	0.0554	CGCCGCTGGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	+	10.6379	5.18e-05	0.0554	CGCCGCTGGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	+	10.6379	5.18e-05	0.0554	TGCCTTCACGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	+	10.6379	5.18e-05	0.0554	TGCCTTCACGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	+	10.6379	5.18e-05	0.0554	TGCCTTCACGGGA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	14	24	-	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	14	24	-	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	14	24	-	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	14	24	-	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	68	78	-	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	37	47	+	11.5102	5.18e-05	0.181	GCCAGGTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	91	101	+	11.5102	5.18e-05	0.181	GCCAGGTGGCC
Ar	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	-	7.44828	5.18e-05	0.882	GTGAACATCATGTACAG
ETV6	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	13	22	+	11.8077	5.18e-05	0.1	AGCGGAAGGG
E2F6	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	79	89	-	11.8103	5.18e-05	0.0614	GGGAGGGAGTA
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	2	15	+	8.88525	5.18e-05	0.185	GAGCCCCCGGGGCG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	28	38	-	11.4182	5.19e-05	0.202	AGTGAATCATG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	40	50	+	11.4182	5.19e-05	0.202	AGTGAATCATG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	65	75	-	11.4182	5.19e-05	0.202	AGTGAATCATG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	77	87	+	11.4182	5.19e-05	0.202	AGTGAATCATG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	34	48	-	10.9091	5.19e-05	0.312	AAAGAGGGAAAATAA
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	+	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	+	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	-	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	-	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	+	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	+	10.1818	5.19e-05	0.239	ATCACATGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	-	10.1818	5.19e-05	0.239	ATCACATGAC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	+	12.3788	5.19e-05	0.296	GCCACGTGCG
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	-	12.3788	5.19e-05	0.296	GCCACGTGCG
MNT	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	12.3788	5.19e-05	0.296	GGCACGTGGT
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	4	15	-	4.03279	5.19e-05	0.598	AGGCAGGCGTCA
PKNOX2	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	100	111	+	4.03279	5.19e-05	0.598	AGGCAGGCGTCA
ZIC1	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	96	109	+	7.14894	5.19e-05	0.0995	TGCCTCCTGCGGCC
JUND	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	14	24	-	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	14	24	-	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	30	40	+	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	30	40	+	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	76	86	-	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	86	96	-	11.2979	5.19e-05	0.204	AATGACTAATC
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	86	96	-	11.2979	5.19e-05	0.204	AATGACTAATC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	21	39	-	9.31148	5.19e-05	0.118	AGGCCGGCGGGCGGCGCAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	21	39	-	9.31148	5.19e-05	0.118	AGGCCGGCGGGCGGCGCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	2	12	-	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	2	12	-	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	2	12	-	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	2	12	-	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	31	41	+	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	32	42	-	11.5	5.19e-05	0.0143	GGCCCTCCTCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	83	93	+	11.5	5.19e-05	0.0143	TCTCCACCTCC
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	36	46	+	11.5192	5.19e-05	1	TACGTAAACAT
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	36	46	+	11.5192	5.19e-05	1	TACGTAAACAT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	35	54	+	4.57798	5.19e-05	0.0575	CCCCCCCCCGCACGCAGAAG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	34	50	-	4.78182	5.19e-05	0.0266	TTTACCCCACCCCCGCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	34	50	-	4.78182	5.19e-05	0.0266	TTTACCCCACCCCCGCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	34	50	-	4.78182	5.19e-05	0.0266	TTTACCCCACCCCCGCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	34	50	-	4.78182	5.19e-05	0.0266	TTTACCCCACCCCCGCT
SP4	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	65	81	+	4.78182	5.19e-05	0.0266	TTTACCCCACCCCCGCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	94	110	+	4.78182	5.19e-05	0.0266	TCGTCCCCTCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	94	110	+	4.78182	5.19e-05	0.0266	TCGTCCCCTCCCCCTCC
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	15	29	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	15	29	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	15	29	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	15	29	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	15	29	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	47	61	+	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	54	68	-	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	54	68	-	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	54	68	-	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	63	77	-	11.2308	5.19e-05	0.335	GGGGCGCAGAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	63	77	-	11.2308	5.19e-05	0.335	GGGGCGCAGAGTCCG
HNF4G	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	86	100	-	11.2308	5.19e-05	0.335	AGGAAGCAAAGGTCG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	101	114	+	3.89091	5.19e-05	0.188	CAAAAGAGGAGCTA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	101	114	+	3.89091	5.19e-05	0.188	CAAAAGAGGAGCTA
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	11.6727	5.19e-05	0.113	GCCGGATGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	11.6727	5.19e-05	0.113	GCCGGATGTT
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	11.6727	5.19e-05	0.113	TCCGGAAATG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	11.6727	5.19e-05	0.113	TCCGGAAATG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	11.6727	5.19e-05	0.113	TCCGGAAATG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	8	19	-	9.78182	5.19e-05	0.113	TGCCAGGAAGTG
GCM2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	63	72	+	11.5902	5.19e-05	0.718	CATGGGGGTG
GCM2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	63	72	+	11.5902	5.19e-05	0.718	CATGGGGGTG
GCM2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	43	52	-	11.5902	5.19e-05	0.718	CATGGGGGTG
DUX4	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	2	12	-	11.6383	5.19e-05	1	TGACTTAATCA
DUX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	4	14	-	11.6383	5.19e-05	1	TGACTTAATCA
DUX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	4	14	-	11.6383	5.19e-05	1	TGACTTAATCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	-	11.6364	5.19e-05	0.0893	TGGCCGGGGGCG
HNF1A	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	30	44	+	10.7922	5.19e-05	0.9	TGTTAACCATTAATC
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	19	31	+	10.3429	5.19e-05	0.729	AATTCAGATGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	22	34	-	10.3429	5.19e-05	0.729	AATTCAGATGTGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	+	10.7705	5.19e-05	0.0641	AGCCCTGCAGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	+	10.7705	5.19e-05	0.0641	AGCCCTGCAGGGC
T	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	76	91	+	8.59615	5.19e-05	1	TCTCATTCATGTGTCA
T	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	76	91	+	8.59615	5.19e-05	1	TCTCATTCATGTGTCA
T	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	76	91	+	8.59615	5.19e-05	1	TCTCATTCATGTGTCA
Rarg	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	2	17	-	-1.06122	5.19e-05	0.877	AGGATCACAAGGTCAG
Rarg	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	99	114	+	-1.06122	5.19e-05	0.877	AGGATCACAAGGTCAG
Rarg	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	99	114	+	-1.06122	5.19e-05	0.877	AGGATCACAAGGTCAG
Rarg	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	99	114	+	-1.06122	5.19e-05	0.877	AGGATCACAAGGTCAG
Rarg	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	99	114	+	-1.06122	5.19e-05	0.877	AGGATCACAAGGTCAG
RARA	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	57	74	-	-8.15152	5.19e-05	1	GAGATGAGAGGATCAATG
Klf1	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	43	53	+	11.4242	5.2e-05	0.0469	GGGCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	2	12	-	11.4242	5.2e-05	0.0469	GGGCCCGCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	62	72	-	11.4242	5.2e-05	0.0469	GGGCCCGCCCA
HINFP	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	1	12	-	11.2273	5.2e-05	0.109	GCAGGTCCGCCA
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	30	41	+	11.2273	5.2e-05	0.109	GCAGGTCCGCCA
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	36	47	-	11.2273	5.2e-05	0.109	GCAGGTCCGCCA
HINFP	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	68	79	+	11.2273	5.2e-05	0.109	GCAGGTCCGCCA
HINFP	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	74	85	-	11.2273	5.2e-05	0.109	GCAGGTCCGCCA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	5	16	+	9.78689	5.2e-05	0.1	AACAAGGAAGTA
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	5	16	+	9.78689	5.2e-05	0.1	AACAAGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	46	57	+	9.78689	5.2e-05	0.1	TTTCCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	46	57	+	9.78689	5.2e-05	0.1	TTTCCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	46	57	+	9.78689	5.2e-05	0.1	TTTCCGGAAGCG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	38	52	+	8.81429	5.2e-05	0.106	CGCCCCCTGAAGGGC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	38	52	+	8.81429	5.2e-05	0.106	CGCCCCCTGAAGGGC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	95	109	+	8.81429	5.2e-05	0.106	CGCCCCCTGAAGGGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	6	20	-	8.81429	5.2e-05	0.106	CGCCCCCTGAAGGGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	59	73	-	8.81429	5.2e-05	0.106	TGCCCCCCACTGACT
ZIC3	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	63	77	-	8.81429	5.2e-05	0.106	CGCCCCCTGAAGGGC
DUXA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	51	63	-	11.6774	5.2e-05	1	AGAACCCAATCAA
DUXA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	51	63	-	11.6774	5.2e-05	1	AGAACCCAATCAA
DUXA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	51	63	-	11.6774	5.2e-05	1	AGAACCCAATCAA
ESR2	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	15	29	+	11.1923	5.2e-05	0.426	GGGGCACCCGGGCAT
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	32	46	+	11.1923	5.2e-05	0.426	AGGTCAGATCCTCCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	32	46	+	11.1923	5.2e-05	0.426	AGGTCAGATCCTCCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	32	46	+	11.1923	5.2e-05	0.426	AGGTCAGATCCTCCC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	32	46	+	11.1923	5.2e-05	0.426	AGGTCAGATCCTCCC
PLAG1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	11	24	-	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	42	55	-	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	89	102	-	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	1	14	+	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	13	26	+	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	13	26	+	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	18	31	+	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	82	95	+	6.42857	5.2e-05	0.0719	GTGGCGCTCCGGGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	91	104	+	6.42857	5.2e-05	0.0719	GGGGGCGGGAGGGG
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	12.3279	5.2e-05	0.333	AGCACGTGCG
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	12.3279	5.2e-05	0.333	AGCACGTGCG
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	12.3279	5.2e-05	0.333	AGCACGTGCG
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	12.3279	5.2e-05	0.333	AGCACGTGCG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	8	18	-	11.7818	5.2e-05	0.0593	CGGCTTCCGCG
ELK4	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	15	25	-	11.7818	5.2e-05	0.0593	TCATTTCCGCC
ELK4	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	39	49	-	11.7818	5.2e-05	0.0593	CTGTTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	66	76	+	11.7818	5.2e-05	0.0593	CTGTTTCCGGG
Stat4	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	88	101	+	11.8103	5.2e-05	0.284	TTGCTGAGAAGGAG
Myod1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	47	+	12.3061	5.2e-05	0.166	GACAGCTGCGGCT
Myod1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	68	80	-	12.3061	5.2e-05	0.166	GACAGCTGCGGCT
Rxra	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	4	17	-	3.91463	5.2e-05	0.437	GGGGTCAGAGGAGA
Rxra	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	98	111	+	3.91463	5.2e-05	0.437	GGGGTCAGAGGAGA
NFKB2	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	15	27	+	9.0303	5.2e-05	0.258	CGGTGCTTTCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	46	58	+	9.0303	5.2e-05	0.258	CGGGGAACCTCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	46	58	+	9.0303	5.2e-05	0.258	CGGGGAACCTCCC
NFKB2	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	88	100	-	9.0303	5.2e-05	0.258	CGGTGCTTTCCCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	36	46	-	11.7636	5.2e-05	0.0533	AGCCCGAGGGA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	75	85	+	11.7143	5.2e-05	0.198	TCATGAGTCAT
JUNB	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	76	86	+	11.7143	5.2e-05	0.198	AGCTGACTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	83	93	-	11.7143	5.2e-05	0.198	TCATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	83	93	-	11.7143	5.2e-05	0.198	TCATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	83	93	-	11.7143	5.2e-05	0.198	TCATGAGTCAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	83	93	-	11.7143	5.2e-05	0.198	TCATGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	83	93	-	11.7143	5.2e-05	0.198	TCATGAGTCAT
FLI1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.6383	5.2e-05	0.118	ACAGGAAGTA
FLI1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.6383	5.2e-05	0.118	ACAGGAAGTA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	43	57	-	8.11842	5.2e-05	0.232	CCGCTGACTCACCGT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	50	64	+	9.01639	5.2e-05	0.0601	AGCCCCGCCCCCGCA
CREB3	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	35	48	-	10.3286	5.2e-05	0.252	GTGTGACGTCATGC
CREB3	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	40	53	-	10.3286	5.2e-05	0.252	GTGTGACGTCATGC
CREB3	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	62	75	+	10.3286	5.2e-05	0.252	GTGTGACGTCATGC
CREB3	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	67	80	+	10.3286	5.2e-05	0.252	GTGTGACGTCATGC
TP63	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	47	64	+	-0.689655	5.2e-05	0.838	GGCATGCTGGGAGTTGTA
TP63	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	47	64	+	-0.689655	5.2e-05	0.838	GGCATGCTGGGAGTTGTA
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	22	37	+	4.95082	5.2e-05	0.833	CGGTTGACCCAGGTCA
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	22	37	+	4.95082	5.2e-05	0.833	CGGTTGACCCAGGTCA
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	22	37	+	4.95082	5.2e-05	0.833	CGGTTGACCCAGGTCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	22	37	+	4.95082	5.2e-05	0.833	CGGTTGACCCAGGTCA
Myc	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	4	13	+	12.3455	5.2e-05	0.405	ACATGTGCCC
HEY1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	+	11.8545	5.21e-05	0.15	GACACGTGGG
HEY1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	+	11.8545	5.21e-05	0.15	GACACGTGGG
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	+	11.8545	5.21e-05	0.15	AGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	+	11.8545	5.21e-05	0.15	AGCACGCGCC
HEY1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	-	11.8545	5.21e-05	0.15	GACACGTGGG
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	37	46	+	11.4444	5.21e-05	0.297	CGGGCCTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	37	46	+	11.4444	5.21e-05	0.297	CGGGCCTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	22	31	-	11.4444	5.21e-05	0.297	CGGGCCTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	22	31	-	11.4444	5.21e-05	0.297	CGGGCCTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	22	31	-	11.4444	5.21e-05	0.297	CGGGCCTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	22	31	-	11.4444	5.21e-05	0.297	CGGGCCTTCC
FOXP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	98	108	-	12.2273	5.21e-05	1	TTGTAAACACC
EGR2	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	14	24	+	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	9	19	-	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	14	24	-	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	14	24	-	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	20	30	-	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	85	95	+	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	96	106	+	10.1034	5.21e-05	0.0818	CCTCCGACGCA
EGR2	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	91	101	-	10.1034	5.21e-05	0.0818	CCTCCGACGCA
Barhl1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	4	13	+	9.67925	5.21e-05	1	GCTAATCGCT
Barhl1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	102	111	-	9.67925	5.21e-05	1	GCTAATCGCT
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	53	62	+	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	48	57	-	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	48	57	-	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	53	62	-	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	89	98	+	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	89	98	+	11.4909	5.21e-05	0.106	AGCGGAAGCC
ETV5	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.4909	5.21e-05	0.106	CCCGGAAGTC
ETV5	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.4909	5.21e-05	0.106	CCCGGAAGTC
Znf423	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	93	107	+	6.68539	5.21e-05	0.272	CGCGCCCTTGGGGGC
Znf423	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	93	107	+	6.68539	5.21e-05	0.272	CGCGCCCTTGGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	1	15	-	10.8545	5.21e-05	0.109	CGCCGCCCGCTGCCG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	1	15	-	10.8545	5.21e-05	0.109	CGCCGCCCGCTGCCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	1	15	-	10.8545	5.21e-05	0.109	CGCCGCCCGCTGCCG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	22	36	+	10.8545	5.21e-05	0.109	GCCCTCCCGTCGTCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	22	36	+	10.8545	5.21e-05	0.109	GCCCTCCCGTCGTCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	84	98	-	10.8545	5.21e-05	0.109	GCCCCCACATGGCGA
Bcl6	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	92	105	-	11.2742	5.21e-05	0.411	CTTCCTAAAAATAG
Bcl6	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	10	23	+	11.2742	5.21e-05	0.411	CTTCCTAAAAATAG
HEY2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	11.2759	5.21e-05	0.198	ACCACGTGCC
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	7	16	-	11.5161	5.21e-05	0.973	AACATTCCTA
TEAD1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	14	23	-	11.5161	5.21e-05	0.973	CGCATTCCTG
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	14	23	-	11.5161	5.21e-05	0.973	CGCATTCCTG
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	96	105	-	11.5161	5.21e-05	0.973	GACATTCCAA
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	96	105	-	11.5161	5.21e-05	0.973	GACATTCCAA
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	92	101	+	11.5161	5.21e-05	0.973	AACATTCCTA
TEAD1	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	92	101	+	11.5161	5.21e-05	0.973	CGCATTCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	23	36	+	11.3788	5.21e-05	0.0561	GCCGCCGCCGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	79	92	-	11.3788	5.21e-05	0.0561	GCCGCCGCCGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	95	108	+	11.3788	5.21e-05	0.0561	GCCGCCGCCGCCTG
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	43	63	-	5.83673	5.21e-05	0.219	GGCCCCACCTGGCAGAGCGCC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	43	63	-	5.83673	5.21e-05	0.219	GGCCCCACCTGGCAGAGCGCC
Myog	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	6	16	-	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	99	109	+	12.3265	5.21e-05	0.145	AGCAGCTGAGA
EGR4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	40	55	+	10.7455	5.22e-05	0.039	GCGCGCCCCCGCCGAT
EGR4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	60	75	-	10.7455	5.22e-05	0.039	GCGCGCCCCCGCCGAT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	81	96	-	10.7455	5.22e-05	0.039	TCGCGCCCTCGCAGAA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	81	96	-	10.7455	5.22e-05	0.039	TCGCGCCCTCGCAGAA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	81	96	-	10.7455	5.22e-05	0.039	TCGCGCCCTCGCAGAA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	81	96	-	10.7455	5.22e-05	0.039	TCGCGCCCTCGCAGAA
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	28	41	+	3.87273	5.22e-05	0.188	AGAAGGAGGAAGAA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	28	41	+	3.87273	5.22e-05	0.188	AGAAGGAGGAAGAA
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	45	58	-	6.41837	5.22e-05	0.0719	GAGGCCTTCTGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	76	89	-	6.41837	5.22e-05	0.0719	GAGGCCTTCTGCGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	76	89	-	6.41837	5.22e-05	0.0719	GAGGCCTTCTGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	29	42	+	6.41837	5.22e-05	0.0719	GATGGCCTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	29	42	+	6.41837	5.22e-05	0.0719	GATGGCCTCGGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	57	70	+	6.41837	5.22e-05	0.0719	GAGGCCTTCTGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	61	74	+	6.41837	5.22e-05	0.0719	GATGGCCTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	61	74	+	6.41837	5.22e-05	0.0719	GATGGCCTCGGGGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	33	49	-	4.76364	5.22e-05	0.0266	GCAGCTACGCCCCGGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	33	49	-	4.76364	5.22e-05	0.0266	GCAGCTACGCCCCGGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	74	90	+	4.76364	5.22e-05	0.0266	CCAGCCACGCCTGCTGG
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	74	90	+	4.76364	5.22e-05	0.0266	CCAGCCACGCCTGCTGG
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	57	71	+	8.13115	5.22e-05	0.768	CTTCCACAGGTATTG
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	57	71	+	8.13115	5.22e-05	0.768	CTTCCACAGGTATTG
SCRT1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	76	90	-	8.13115	5.22e-05	0.768	AATAAACAAGTGGGA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	48	62	-	10.8333	5.22e-05	0.107	CCACCGCGAGACTTC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	48	62	-	10.8333	5.22e-05	0.107	CCACCGCGAGACTTC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	48	62	-	10.8333	5.22e-05	0.107	CCACCGCGAGACTTC
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	51	65	-	10.8333	5.22e-05	0.107	CTCCCGCGCGGTGGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	96	110	-	10.8333	5.22e-05	0.107	CTCCCGCGCGGTGGC
ZBTB33	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	5	19	+	10.8333	5.22e-05	0.107	CTCCCGCGCGGTGGC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	50	64	+	10.8333	5.22e-05	0.107	CTCCCGCGCGGTGGC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	53	67	+	10.8333	5.22e-05	0.107	CCACCGCGAGACTTC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	45	62	+	-12.2632	5.22e-05	0.0466	GGAAGTGAGAAAAGCTGG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	9	20	+	11.3026	5.22e-05	0.0301	ACCCCGCCTCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	9	20	+	11.3026	5.22e-05	0.0301	ACCCCGCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	9	20	+	11.3026	5.22e-05	0.0301	ACCCCGCCTCCA
SREBF2	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	30	39	+	11.8427	5.22e-05	0.871	GTCGGGTGAC
SREBF2	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	76	85	-	11.8427	5.22e-05	0.871	GTCGGGTGAC
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	14	23	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	7	16	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	21	30	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	21	30	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	24	33	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	24	33	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	24	33	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	24	33	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	27	36	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	27	36	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	27	36	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	27	36	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	28	37	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	29	38	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	20	29	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	23	32	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	23	32	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	23	32	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	23	32	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	23	32	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	28	37	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	40	49	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	33	42	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	33	42	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	52	61	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	52	61	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	53	62	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	44	53	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	44	53	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	44	53	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	44	53	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	59	68	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	59	68	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	54	63	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	66	75	+	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	64	73	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	70	79	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	70	79	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	70	79	-	11.3939	5.22e-05	0.165	GGAGGGGGGT
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	83	92	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	83	92	+	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	86	95	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	77	86	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	78	87	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	89	98	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	89	98	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	89	98	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	89	98	-	11.3939	5.22e-05	0.165	GGAGGGGGTG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	99	108	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	99	108	+	11.3939	5.22e-05	0.165	GGAGGGGTGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	92	101	-	11.3939	5.22e-05	0.165	GGAGGGGTGG
SP2	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	3	17	+	10.9655	5.22e-05	0.0125	CCTCCTCCTACTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	35	49	+	10.9655	5.22e-05	0.0125	CTCCCTCCCCTTAAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	35	49	+	10.9655	5.22e-05	0.0125	CTCCCTCCCCTTAAG
SP2	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	38	52	+	10.9655	5.22e-05	0.0125	TCCCCTCCCTTTAGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	42	56	+	10.9655	5.22e-05	0.0125	GGCCCACCCACCTTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	42	56	+	10.9655	5.22e-05	0.0125	GGCCCACCCACCTTG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	42	56	+	10.9655	5.22e-05	0.0125	GGCCCACCCACCTTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	42	56	+	10.9655	5.22e-05	0.0125	GGCCCACCCACCTTG
SP2	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	53	67	+	10.9655	5.22e-05	0.0125	ACTCCGCCTCCAAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	74	+	10.9655	5.22e-05	0.0125	ACCCCACCCCGCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	74	+	10.9655	5.22e-05	0.0125	ACCCCACCCCGCTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	74	+	10.9655	5.22e-05	0.0125	ACCCCACCCCGCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	96	110	+	10.9655	5.22e-05	0.0125	ACCCCTCCTCCAGAC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	96	110	+	10.9655	5.22e-05	0.0125	ACCCCTCCTCCAGAC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	96	110	+	10.9655	5.22e-05	0.0125	ACCCCTCCTCCAGAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	96	110	+	10.9655	5.22e-05	0.0125	ACCCCTCCTCCAGAC
SP2	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	59	73	-	10.9655	5.22e-05	0.0125	GGCCCACCCACCTTG
SP2	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	66	80	-	10.9655	5.22e-05	0.0125	CTCCCTCCCCTTAAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	67	81	-	10.9655	5.22e-05	0.0125	CTCCCTCCCCGCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	67	81	-	10.9655	5.22e-05	0.0125	CTCCCTCCCCGCAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	17	36	+	4.55963	5.22e-05	0.0577	CCCCGACCCGCCCCCGACCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	17	36	+	4.55963	5.22e-05	0.0577	CCCCGACCCGCCCCCGACCC
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	44	60	-	4.06557	5.22e-05	0.563	AGGGCACAAAAAGCGCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	44	60	-	4.06557	5.22e-05	0.563	AGGGCACAAAAAGCGCA
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	55	71	+	4.06557	5.22e-05	0.563	AGGGCACAAAAAGCGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	14	26	-	10.6207	5.22e-05	0.0554	CCCCCTGGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	-	10.6207	5.22e-05	0.0554	TCCCTCTCGGGGA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	+	10.6207	5.22e-05	0.0554	CCCCCCTGGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	-	10.6207	5.22e-05	0.0554	CCCCCCTGGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	-	10.6207	5.22e-05	0.0554	CCCCCCTGGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	-	10.6207	5.22e-05	0.0554	CCCCCCTGGGGGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	+	10.6207	5.22e-05	0.0554	TCCCTCTCGGGGA
Stat6	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	43	57	+	11.5172	5.22e-05	0.692	AAATTCCAGTGAAGC
Stat6	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	58	72	-	11.5172	5.22e-05	0.692	AAATTCCAGTGAAGC
ELF5	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	43	53	+	11.6545	5.22e-05	0.139	ATCCGGAAGAA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	60	71	-	7.57143	5.22e-05	0.176	CCTGATGTCACA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	60	71	-	7.57143	5.22e-05	0.176	CCTGATGTCACA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	5	19	+	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	8	22	+	7.2069	5.22e-05	0.0383	CCCCCCCCCCCCAGT
EGR3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	20	34	+	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	43	57	+	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	34	48	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	37	51	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	54	68	+	7.2069	5.22e-05	0.0383	ACACACCCACCCGCC
EGR3	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	47	61	-	7.2069	5.22e-05	0.0383	ACACACCCACCCGCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	51	65	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	51	65	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	51	65	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	51	65	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	58	72	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	67	81	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	81	95	-	7.2069	5.22e-05	0.0383	CCCCGGCCCCGCCCC
DBP	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	58	69	-	11.8491	5.22e-05	1	GGTTATATAAGG
DBP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	46	57	+	11.8491	5.22e-05	1	GGTTATATAAGG
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	46	57	+	11.8491	5.22e-05	1	GGTTATATAAGG
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	46	57	+	11.8491	5.22e-05	1	GGTTATATAAGG
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	46	57	+	11.8491	5.22e-05	1	GGTTATATAAGG
DBP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	46	57	+	11.8491	5.22e-05	1	GGTTATATAAGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	82	92	-	11.5517	5.22e-05	0.0475	GCGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	2	12	+	11.5517	5.22e-05	0.0475	CGGCGCGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	2	12	+	11.5517	5.22e-05	0.0475	CGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	2	12	+	11.5517	5.22e-05	0.0475	CGGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	2	12	+	11.5517	5.22e-05	0.0475	CGGCGCGAGCG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	2	12	+	11.5517	5.22e-05	0.0475	CGGCGCGAGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	59	69	+	11.5517	5.22e-05	0.0475	GCGCGGGGAAG
PAX9	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	83	99	+	1.63636	5.22e-05	0.501	CGCCCCGCGTCAGCGCG
PAX9	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	16	32	-	1.63636	5.22e-05	0.501	CGCCCCGCGTCAGCGCG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	16	32	-	1.63636	5.22e-05	0.501	CGCCCCGCGTCAGCGCG
E2F8	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	19	30	-	5.85366	5.22e-05	0.631	TTTCCGACAAAA
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	85	96	+	5.85366	5.22e-05	0.631	TTTCCGACAAAA
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	85	96	+	5.85366	5.22e-05	0.631	TTTCCGACAAAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	85	96	+	5.85366	5.22e-05	0.631	TTTCCGACAAAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	85	96	+	5.85366	5.22e-05	0.631	TTTCCGACAAAA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	-	10.7541	5.22e-05	0.0641	CGCCCACCGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	-	10.7541	5.22e-05	0.0641	CGCCCACCGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	+	10.7541	5.22e-05	0.0641	CGCCCCGTAGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	+	10.7541	5.22e-05	0.0641	CGCCTCGGCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	-	10.7541	5.22e-05	0.0641	ACCCCGGGCGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	-	10.7541	5.22e-05	0.0641	ACCCCGGGCGGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	11.7241	5.22e-05	0.126	TCCGGAAATG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	11.7241	5.22e-05	0.126	TCCGGAAATG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	11.7241	5.22e-05	0.126	TCCGGAAATG
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	10	23	-	9.78689	5.22e-05	0.365	TGTCCCTGGAGAAA
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	10	23	-	9.78689	5.22e-05	0.365	TGTCCCTGGAGAAA
EBF1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	13	26	-	9.78689	5.22e-05	0.365	GGTCCCGGGGGAGA
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	-	6	5.22e-05	0.952	GGGTACAGCATGTCACA
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	-	6	5.22e-05	0.952	GGGTACAGCATGTCACA
NR3C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	+	6	5.22e-05	0.952	GGGTACAGCATGTCACA
NR3C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	+	6	5.22e-05	0.952	GGGTACAGCATGTCACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	44	58	+	10.7792	5.22e-05	0.9	TGTTACTAAGTAACG
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	44	58	+	10.7792	5.22e-05	0.9	TGTTACTAAGTAACG
CTCF	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	11	29	-	9.29508	5.23e-05	0.118	CGAACGGGAGGCGGCGCTG
CTCF	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	86	104	+	9.29508	5.23e-05	0.118	CGAACGGGAGGCGGCGCTG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	91	109	-	9.29508	5.23e-05	0.118	AAGCCGCCGGGGGACGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	91	109	-	9.29508	5.23e-05	0.118	AAGCCGCCGGGGGACGCGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	91	109	-	9.29508	5.23e-05	0.118	AAGCCGCCGGGGGACGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	19	39	-	10.1429	5.23e-05	0.0171	GAGGAGGGAGGAAGGGAGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	32	52	-	10.1429	5.23e-05	0.0171	GGGGGCGGGACTGGGGAGGCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	32	52	-	10.1429	5.23e-05	0.0171	GGGGGCGGGACTGGGGAGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	32	52	-	10.1429	5.23e-05	0.0171	GGGGGCGGGACTGGGGAGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	46	66	-	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	46	66	-	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	51	71	-	10.1429	5.23e-05	0.0171	AGGGAAGCAGGAGAGAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	51	71	-	10.1429	5.23e-05	0.0171	AGGGAAGCAGGAGAGAAAAAA
ZNF263	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	77	97	-	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:49582776..49582890,-__1287.1.0.0	82	102	-	10.1429	5.23e-05	0.0171	GATGGCGGAGACGAAGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	18	38	+	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	18	38	+	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	18	38	+	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	18	38	+	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	49	69	+	10.1429	5.23e-05	0.0171	GGAAGCCGGCGGCGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	58	78	+	10.1429	5.23e-05	0.0171	GAGGCAAAACAAGAGGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	58	78	+	10.1429	5.23e-05	0.0171	GAGGCAAAACAAGAGGGAAGA
ZNF263	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	63	83	+	10.1429	5.23e-05	0.0171	GGGGGCGGGACTGGGGAGGCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	75	95	+	10.1429	5.23e-05	0.0171	GAGGGAGAGCAATGGGGACGG
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	4	15	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	4	15	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	17	28	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	11	22	-	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	30	41	-	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	48	59	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	48	59	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	49	60	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	74	85	+	4.25862	5.23e-05	0.189	CGCCACGTGACC
HES7	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	100	111	-	4.25862	5.23e-05	0.189	CGCCACGTGACC
SOX4	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	79	94	-	-11.1667	5.23e-05	1	GAACAGGCTCAGTGTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	31	44	+	9.46552	5.23e-05	0.0337	TGTCCCGCCCCTGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	31	44	+	9.46552	5.23e-05	0.0337	TGTCCCGCCCCTGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	31	44	+	9.46552	5.23e-05	0.0337	TGTCCCGCCCCTGG
Six3	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	55	71	+	10.8816	5.23e-05	1	TACGAGGTATCAGCACT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	20	32	-	9.01515	5.23e-05	0.258	GCGGGAAGCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	20	32	-	9.01515	5.23e-05	0.258	GCGGGAAGCCCCG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	20	32	-	9.01515	5.23e-05	0.258	GCGGGAAGCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	20	32	-	9.01515	5.23e-05	0.258	GCGGGAAGCCCCG
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	48	58	+	11.4444	5.23e-05	1	TGATGTAACAG
NFIL3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	48	58	+	11.4444	5.23e-05	1	TGATGTAACAG
NFIL3	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	85	95	+	11.4444	5.23e-05	1	TGATGTAATGA
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	3	14	-	11.5484	5.23e-05	0.281	ACGCCCCCCGCG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	9	20	-	11.5484	5.23e-05	0.281	GCACCCACCACA
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	9	20	-	11.5484	5.23e-05	0.281	GCACCCACCACA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	101	112	+	11.5484	5.23e-05	0.281	GCACCCACCACA
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	101	112	+	11.5484	5.23e-05	0.281	GCACCCACCACA
PPARG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	63	82	+	7.76667	5.23e-05	1	CTAGGTGTGAGTGAGCCAGT
PPARG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	63	82	+	7.76667	5.23e-05	1	CTAGGTGTGAGTGAGCCAGT
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	92	106	+	10.3333	5.23e-05	0.308	TACCGTGACAATGCA
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	92	106	+	10.3333	5.23e-05	0.308	TACCGTGACAATGCA
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	62	72	+	10.8909	5.23e-05	0.254	TACCGGAAGTT
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	62	72	+	10.8909	5.23e-05	0.254	TACCGGAAGTT
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	11	20	-	11.3265	5.23e-05	0.0207	TGGGTGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	33	42	+	11.3265	5.23e-05	0.0207	TGGGTGGGAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	33	42	+	11.3265	5.23e-05	0.0207	TGGGTGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	105	114	+	11.3265	5.23e-05	0.0207	TGGGTGGGAC
ZNF740	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	5	14	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	33	42	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	33	42	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	38	47	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	38	47	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	38	47	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	38	47	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	38	47	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	56	65	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	62	71	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	62	71	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	72	81	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	72	81	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	72	81	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	72	81	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	76	85	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	80	89	+	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	2	11	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	26	35	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	28	37	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	28	37	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	28	37	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	30	39	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	33	42	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	33	42	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	50	59	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	68	77	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	68	77	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	68	77	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	73	82	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	74	83	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	101	110	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	101	110	-	11.1101	5.23e-05	0.0548	CCCCACCCAC
NRL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	5	15	+	11.0769	5.23e-05	0.823	GATCTGCTGAG
NRL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	5	15	+	11.0769	5.23e-05	0.823	GATCTGCTGAG
NRL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	81	91	+	11.0769	5.23e-05	0.823	TTTTCGCTGAC
CDX1	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	11	19	-	11.283	5.23e-05	1	ACCATAAAA
CDX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	21	29	+	11.283	5.23e-05	1	ACCATAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	31	39	+	11.283	5.23e-05	1	GCAATAAAT
CDX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	31	39	+	11.283	5.23e-05	1	GCAATAAAT
NR2C2	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	94	108	-	9.97143	5.23e-05	0.122	AGAGATTAAAGGTGA
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	107	-	12.6122	5.23e-05	0.422	CCCACCTGCT
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	107	-	12.6122	5.23e-05	0.422	CCCACCTGCT
SNAI2	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	4	12	-	11.8605	5.23e-05	0.456	CGCAGGTGT
SNAI2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	67	75	-	11.8605	5.23e-05	0.456	CGCAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	84	92	+	11.8605	5.23e-05	0.456	CGCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	84	92	+	11.8605	5.23e-05	0.456	CGCAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	105	113	-	11.8605	5.23e-05	0.456	CGCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	105	113	-	11.8605	5.23e-05	0.456	CGCAGGTGT
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	21	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	21	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	41	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	26	34	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	26	34	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	26	34	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	44	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	29	37	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	45	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	45	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	34	42	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	34	42	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	37	45	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	38	46	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	38	46	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	56	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	56	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	49	57	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	49	57	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	67	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	60	68	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	85	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	85	+	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	78	86	-	12.3708	5.23e-05	0.21	GTCACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	78	86	-	12.3708	5.23e-05	0.21	GTCACGTGA
Sox6	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	44	53	+	12.3857	5.23e-05	0.754	GCTTTGTCCC
Sox6	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	73	82	+	12.3857	5.23e-05	0.754	GCTTTGTCCC
Sox6	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	33	42	-	12.3857	5.23e-05	0.754	GCTTTGTCCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	62	71	-	12.3857	5.23e-05	0.754	GCTTTGTCCC
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	62	71	-	12.3857	5.23e-05	0.754	GCTTTGTCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	90	107	+	-12.2763	5.23e-05	0.0466	GTGGAGGAGGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	90	107	+	-12.2763	5.23e-05	0.0466	GTGGAGGAGGAAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	72	89	-	-12.2763	5.23e-05	0.0466	GGAAAAGAAGAACGAGGG
SP1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	33	43	+	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	35	45	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	38	48	+	11.4808	5.23e-05	0.0143	GTTCCTCCCTC
SP1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	28	38	-	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	33	43	-	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	33	43	-	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	34	44	-	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	34	44	-	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	34	44	-	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	45	55	-	11.4808	5.23e-05	0.0143	GTTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	45	55	-	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	45	55	-	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	46	56	-	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	59	69	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	72	82	+	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	77	87	+	11.4808	5.23e-05	0.0143	GCTCCTCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	70	80	-	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	99	109	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	99	109	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	99	109	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	99	109	+	11.4808	5.23e-05	0.0143	TGCCCGCCCAC
TBR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	69	78	+	11.7021	5.23e-05	0.898	AGGTGTGAGC
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	69	78	+	11.7021	5.23e-05	0.898	AGGTGTGAGC
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	69	78	+	11.7021	5.23e-05	0.898	AGGTGTGAGC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	32	42	+	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	32	42	+	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	32	42	+	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	32	42	+	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	27	37	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	27	37	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	27	37	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	27	37	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	82	92	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	82	92	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	82	92	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	82	92	-	11.9184	5.23e-05	0.788	ATTGCATCAGC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	4	18	+	9	5.23e-05	0.0601	AGCCCCGCCCCCGAC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	4	18	+	9	5.23e-05	0.0601	AGCCCCGCCCCCGAC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	4	18	+	9	5.23e-05	0.0601	AGCCCCGCCCCCGAC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	4	18	+	9	5.23e-05	0.0601	AGCCCCGCCCCCGAC
Klf12	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	28	42	-	9	5.23e-05	0.0601	CGCCACGCCTTCCAA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	41	55	-	9	5.23e-05	0.0601	TGCCCCACCCTCCGC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	60	74	+	9	5.23e-05	0.0601	AGCCCCACCCACCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	60	74	+	9	5.23e-05	0.0601	AGCCCCACCCACCCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	71	85	-	9	5.23e-05	0.0601	AGCCCCACCCACCCC
Klf12	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	97	111	-	9	5.23e-05	0.0601	AGCCCCGCCCCCGAC
ELF1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	16	27	+	9.74545	5.23e-05	0.113	GAGCCGGATGTG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	32	-	9.74545	5.23e-05	0.113	GAACCGGAAGAG
ELF1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	34	-	9.74545	5.23e-05	0.113	GAGCCGGATGTG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	39	-	9.74545	5.23e-05	0.113	GAACCGGAAGAG
ELF1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	81	92	+	9.74545	5.23e-05	0.113	GAGCCGGATGTG
ELF1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	99	-	9.74545	5.23e-05	0.113	GAGCCGGATGTG
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	11	22	-	9.74194	5.23e-05	0.965	GCTAATTATAGT
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	48	59	+	11.53	5.23e-05	1	ATTATGTAGATT
PRDM1	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	59	73	-	10.8909	5.24e-05	0.312	AAAAAGAGAGATTGA
RELA	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	24	33	+	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	31	40	-	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	31	40	-	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	31	40	-	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	31	40	-	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	75	84	+	11.0408	5.24e-05	0.219	TGGACTTCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	82	91	-	11.0408	5.24e-05	0.219	TGGACTTCCC
Esrra	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	93	103	-	8.25455	5.24e-05	0.884	TTAAAGGTGAT
PKNOX1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	-	3.55102	5.24e-05	1	TGACAGCAGCCA
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	11.6552	5.24e-05	1	AGCATATGCC
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	11.6552	5.24e-05	1	AGCATATGCC
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	17	27	+	11.0727	5.24e-05	0.35	TTTATGGGAAC
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	17	27	+	11.0727	5.24e-05	0.35	TTTATGGGAAC
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	47	59	-	11.7755	5.24e-05	0.427	CCGAGGTCAACTA
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	99	111	-	11.7755	5.24e-05	0.427	TGGAGGTCACATG
NR2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	99	111	-	11.7755	5.24e-05	0.427	TGGAGGTCACATG
NR2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	99	111	-	11.7755	5.24e-05	0.427	TGGAGGTCACATG
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	99	111	-	11.7755	5.24e-05	0.427	TGGAGGTCACATG
Esrrg	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	4	13	-	11.551	5.24e-05	0.829	TGAAGGGCAT
Esrrg	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	61	70	-	11.551	5.24e-05	0.829	TGAAGGGCAT
Esrrg	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	45	54	+	11.551	5.24e-05	0.829	TGAAGGGCAT
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	45	54	+	11.551	5.24e-05	0.829	TGAAGGGCAT
Esrrg	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	102	111	+	11.551	5.24e-05	0.829	TGAAGGGCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	1	9	+	10.1207	5.24e-05	0.267	ATTACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	1	9	+	10.1207	5.24e-05	0.267	ATTACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	1	9	+	10.1207	5.24e-05	0.267	ATTACTCAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	1	9	+	10.1207	5.24e-05	0.267	ATTACTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	83	91	+	10.1207	5.24e-05	0.267	ATTACTCAT
EGR2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	102	112	-	10.069	5.24e-05	0.0818	TCACCCACGCC
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	22	30	-	11.3273	5.24e-05	0.329	ATGCCCACA
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.1.0	22	30	-	11.3273	5.24e-05	0.329	ATGCCCACA
HIC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	39	47	+	11.3273	5.24e-05	0.329	ATGCCCGCG
HIC2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	101	109	-	11.3273	5.24e-05	0.329	ATGCCCGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	56	69	-	6.40816	5.24e-05	0.0719	GAGGGCGTCGCGGG
NRF1	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	10	20	+	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	99	109	+	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	99	109	+	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	100	110	+	10.6909	5.24e-05	0.0185	GCCGGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	100	110	+	10.6909	5.24e-05	0.0185	GCCGGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	14	24	-	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	14	24	-	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	25	35	-	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	25	35	-	10.6909	5.24e-05	0.0185	GCCCCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	63	73	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	63	73	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	63	73	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	63	73	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	75	85	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	75	85	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	95	105	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	95	105	-	10.6909	5.24e-05	0.0185	CCGGGTGCGCC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	-	10.9016	5.24e-05	0.0586	TCCCCAGCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	+	10.9016	5.24e-05	0.0586	GCCCCCAGGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	+	10.9016	5.24e-05	0.0586	GCCCCCAGGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	+	10.9016	5.24e-05	0.0586	GCCCCCAGGGGGG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	-	10.9016	5.24e-05	0.0586	GCCCCCAGGGGGG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	13	23	+	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	27	37	+	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	43	53	+	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	49	59	+	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	57	67	+	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	7	17	-	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	7	17	-	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	33	43	-	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	56	66	-	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	62	72	-	11.0172	5.24e-05	0.0193	CCCCCCCCCCT
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	60	71	+	10.8197	5.24e-05	0.126	GAGCCGGAAGCT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	65	76	+	10.8197	5.24e-05	0.126	GAGCCGGAAGCT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	65	76	+	10.8197	5.24e-05	0.126	GAGCCGGAAGCT
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	65	76	+	10.8197	5.24e-05	0.126	GAGCCGGAAGCT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	41	-	10.8197	5.24e-05	0.126	ATGCCGGAAATG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	41	-	10.8197	5.24e-05	0.126	ATGCCGGAAATG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	33	44	-	10.8197	5.24e-05	0.126	TACCGGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	33	44	-	10.8197	5.24e-05	0.126	TACCGGGAAGTC
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	27	36	-	10.9245	5.24e-05	1	TAATTGATTG
PAX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	27	36	-	10.9245	5.24e-05	1	TAATTGATTG
PAX3	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	95	104	-	10.9245	5.24e-05	1	TAATTGATTG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	11	21	-	11.4262	5.24e-05	0.0592	CCGGAAGACAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	11	21	-	11.4262	5.24e-05	0.0592	CCGGAAGACAC
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	50	62	+	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	50	62	+	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	50	62	+	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	50	62	+	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	65	77	-	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	65	77	-	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	65	77	-	11.5488	5.24e-05	1	TTGGTGTGAATAT
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	65	77	-	11.5488	5.24e-05	1	TTGGTGTGAATAT
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	21	+	11.2115	5.24e-05	0.335	AGGGGTGAGAGGTCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	21	+	11.2115	5.24e-05	0.335	AGGGGTGAGAGGTCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	65	79	+	11.2115	5.24e-05	0.335	TGAGGGCGAAGGCCA
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	23	+	-4.35955	5.24e-05	1	AGGGGTGAGAGGTCAGA
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	23	+	-4.35955	5.24e-05	1	AGGGGTGAGAGGTCAGA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	73	82	-	11.431	5.24e-05	0.128	AGCAGATGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	73	82	-	11.431	5.24e-05	0.128	AGCAGATGCG
Stat4	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	18	31	+	11.7931	5.24e-05	0.284	CTGACGAGAAAGCG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	56	69	+	11.7931	5.24e-05	0.284	ATTCTAGGAAGGCT
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	56	69	+	11.7931	5.24e-05	0.284	ATTCTAGGAAGGCT
Stat4	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	84	97	-	11.7931	5.24e-05	0.284	CTGACGAGAAAGCG
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	8	17	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	8	17	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	8	17	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	29	38	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	29	38	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	40	49	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	49	58	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	49	58	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	49	58	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	49	58	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	49	58	-	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	29	38	+	11.7347	5.24e-05	0.0204	GCCTCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	29	38	+	11.7347	5.24e-05	0.0204	GCCTCTCCCC
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	29	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	33	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	33	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	21	31	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	31	41	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	32	42	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	48	58	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	48	58	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	65	75	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	65	75	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	83	+	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	84	94	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	84	94	-	11.4615	5.24e-05	0.0143	GCCCCACCCAG
Alx4	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	90	106	+	11.5714	5.24e-05	1	GGGTCTAATTAGTTGAG
USF1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	104	114	-	11.4898	5.24e-05	0.182	CGCATGTGACG
USF1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	1	11	+	11.4898	5.24e-05	0.182	CGCATGTGACG
HNF1B	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	31	43	-	10.6061	5.25e-05	0.936	ATTAATGGTTAAC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	+	11.6545	5.25e-05	0.055	CGCCGCCGGGCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	53	-	11.6545	5.25e-05	0.055	AGCCCGCGGGGA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	62	73	+	11.6545	5.25e-05	0.055	AGCCCGCGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	62	73	+	11.6545	5.25e-05	0.055	AGCCCGCGGGGA
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	-	11.6545	5.25e-05	0.055	CGCCGCCGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	24	34	-	11.7455	5.25e-05	0.0535	TCCCTCCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	24	34	-	11.7455	5.25e-05	0.0535	TCCCTCCGGCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	58	69	-	3.68966	5.25e-05	0.296	GGACAAGTGCCT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	58	69	-	3.68966	5.25e-05	0.296	GGACAAGTGCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	19	30	+	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	19	30	+	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	19	30	+	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	10	21	-	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
SP8	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	37	48	+	11.2895	5.25e-05	0.0301	GAAACGCCCCGC
SP8	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	40	51	-	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
SP8	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	67	78	-	11.2895	5.25e-05	0.0301	GAAACGCCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	85	96	-	11.2895	5.25e-05	0.0301	CCCACCCCCGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	-	10.6034	5.25e-05	0.0554	TCCCCAGCGGGCC
GLIS3	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	25	38	+	4.68182	5.25e-05	0.379	TCCCTCCCAGGATG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	37	50	-	4.68182	5.25e-05	0.379	TCCCTCCCAGGATG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	65	78	+	4.68182	5.25e-05	0.379	TCCCTCCCAGGATG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	77	90	-	4.68182	5.25e-05	0.379	TCCCTCCCAGGATG
ESR2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	11	25	+	11.1731	5.25e-05	0.426	AGGTCTCCCTGGCCG
ESR2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	90	104	-	11.1731	5.25e-05	0.426	AGGTCTCCCTGGCCG
TEAD4	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	29	38	+	11.5323	5.25e-05	0.799	GGCATTCCAG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	44	53	+	11.5323	5.25e-05	0.799	GGCATTCCAG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	7	16	-	11.5323	5.25e-05	0.799	GGCATTCCAG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	19	32	+	11.3636	5.25e-05	0.0564	CCCGCCCCGCCCTG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	5	19	-	7.18966	5.25e-05	0.0383	CCCCGCCCCTGCTCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	12	26	-	7.18966	5.25e-05	0.0383	CTCCTCCGACGCAAC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	12	26	-	7.18966	5.25e-05	0.0383	CTCCTCCGACGCAAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	15	29	-	7.18966	5.25e-05	0.0383	CCACACCTCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	15	29	-	7.18966	5.25e-05	0.0383	CCACACCTCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	15	29	-	7.18966	5.25e-05	0.0383	CCACACCTCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	15	29	-	7.18966	5.25e-05	0.0383	CCACACCTCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	19	33	-	7.18966	5.25e-05	0.0383	CCTCCCCCCCGCGCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	80	94	+	7.18966	5.25e-05	0.0383	CCCCGCCCCTGCTCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	82	96	-	7.18966	5.25e-05	0.0383	CGCCGCCTGCGCGCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	41	53	+	9	5.25e-05	0.258	GAGGGATGCCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	86	98	-	9	5.25e-05	0.258	GAGGGATGCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	86	98	-	9	5.25e-05	0.258	GAGGGATGCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	86	98	-	9	5.25e-05	0.258	GAGGGATGCCCCG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	86	98	-	9	5.25e-05	0.258	GAGGGATGCCCCG
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	31	43	-	11.0612	5.25e-05	0.303	TCAGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	31	43	-	11.0612	5.25e-05	0.303	TCAGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	31	43	-	11.0612	5.25e-05	0.303	TCAGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	31	43	-	11.0612	5.25e-05	0.303	TCAGTGACGTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	47	60	+	11.75	5.25e-05	0.223	AACAAATGACTCAA
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	55	68	-	11.75	5.25e-05	0.223	AACAAATGACTCAA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	55	68	-	11.75	5.25e-05	0.223	AACAAATGACTCAA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	55	68	-	11.75	5.25e-05	0.223	AACAAATGACTCAA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	55	68	-	11.75	5.25e-05	0.223	AACAAATGACTCAA
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	-	11.8302	5.25e-05	1	GGTTACGTCACC
DBP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	-	11.8302	5.25e-05	1	GGTTACGTCACC
DBP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	-	11.8302	5.25e-05	1	GGTTACGTCACC
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	-	11.8302	5.25e-05	1	GGTTACGTCACC
THAP1	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	14	22	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	16	24	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	26	34	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	28	36	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	28	36	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	30	38	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	30	38	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	31	39	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	31	39	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	31	39	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	31	39	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	31	39	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	69	77	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	83	91	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	83	91	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	83	91	+	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	3	11	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	3	11	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	3	11	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	24	32	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	24	32	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	61	69	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	61	69	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	61	69	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	61	69	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	70	78	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	70	78	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	76	84	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	81	89	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	102	110	-	10.3158	5.25e-05	0.215	CCGCCCTCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	102	110	-	10.3158	5.25e-05	0.215	CCGCCCTCA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	17	31	-	11.5211	5.25e-05	0.341	GTTCAGTAAACAGAT
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	17	31	-	11.5211	5.25e-05	0.341	GTTCAGTAAACAGAT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	4	16	+	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	46	58	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	46	58	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	46	58	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	99	111	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	99	111	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	99	111	-	10.7377	5.25e-05	0.0641	AGCCCTTCCGGCC
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	78	91	-	6.32653	5.25e-05	0.365	TGGCTACGGGGCAA
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	24	37	+	6.32653	5.25e-05	0.365	TGGCTACGGGGCAA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	+	11.6538	5.25e-05	0.0744	CGCCGCCGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	+	11.6538	5.25e-05	0.0744	CGCCGCCGGCG
MTF1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	101	114	+	6.9878	5.25e-05	0.5	TCAGCACTCGTCGC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	2	22	+	5.81633	5.25e-05	0.219	TTCTGGACCTGGTCCAGCACA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	2	22	+	5.81633	5.25e-05	0.219	TTCTGGACCTGGTCCAGCACA
MAFK	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	85	99	-	11.6	5.25e-05	1	CCTTCTCAGCAACTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	65	79	+	10.8364	5.26e-05	0.109	CCCGCCCCACTGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	65	79	+	10.8364	5.26e-05	0.109	CCCGCCCCACTGGGC
ID4	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	57	66	-	12.6557	5.26e-05	0.389	AACACCTGCA
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	104	113	+	12.6557	5.26e-05	0.389	AACACCTGCA
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	104	113	+	12.6557	5.26e-05	0.389	AACACCTGCA
EVX1	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	66	75	-	10.434	5.26e-05	1	CCTGATTAGC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	39	+	10.7571	5.26e-05	0.247	GTGACGTGAT
HES7	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	6	17	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	19	30	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	19	30	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	19	30	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	19	30	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	33	44	+	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	69	80	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	71	82	-	4.24138	5.26e-05	0.189	ACGCACGCGCCG
HES7	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	98	109	+	4.24138	5.26e-05	0.189	ACGCACGCGCCG
NRF1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	43	53	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	48	58	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	56	66	+	10.6727	5.26e-05	0.0185	GAGGCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	56	66	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	56	66	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	68	78	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	90	100	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	98	108	+	10.6727	5.26e-05	0.0185	GAGGCGGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	100	110	+	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	5	15	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	7	17	-	10.6727	5.26e-05	0.0185	GAGGCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	15	25	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	15	25	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	37	47	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	49	59	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	49	59	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	49	59	-	10.6727	5.26e-05	0.0185	GAGGCGGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	57	67	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	62	72	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	97	107	-	10.6727	5.26e-05	0.0185	GCCCGCGCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	23	36	-	7.10638	5.26e-05	0.0995	CCCCCCCCGCCGGC
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	23	36	-	7.10638	5.26e-05	0.0995	CCCCCCCCGCCGGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	23	36	-	7.10638	5.26e-05	0.0995	CCCCCCCCGCCGGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	23	36	-	7.10638	5.26e-05	0.0995	CCCCCCCCGCCGGC
Hes2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	72	84	-	11	5.26e-05	0.51	TGATGAAACGTGA
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	72	84	-	11	5.26e-05	0.51	TGATGAAACGTGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	+	11.6182	5.26e-05	0.0893	CGGCCCCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	+	11.6182	5.26e-05	0.0893	CGGCCCCGGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	+	11.6182	5.26e-05	0.0893	CGGCCCCGGGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	+	11.6182	5.26e-05	0.0893	TGCCCGGAGCCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	84	95	+	11.6182	5.26e-05	0.0893	TGCCCCTGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	85	96	+	11.6182	5.26e-05	0.0893	AGGCCCAGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	-	11.6182	5.26e-05	0.0893	CGGCCCCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	73	-	11.6182	5.26e-05	0.0893	TCCCCGCGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	73	-	11.6182	5.26e-05	0.0893	TCCCCGCGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	-	11.6182	5.26e-05	0.0893	TGCCTCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	-	11.6182	5.26e-05	0.0893	TGCCTCCGGCCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	84	95	-	11.6182	5.26e-05	0.0893	GGCCCAGGGGCA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	5	19	+	9.95714	5.26e-05	0.122	TGGGGGGAGAGGCGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	68	79	-	11.3143	5.26e-05	0.217	AGCAACCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	68	79	-	11.3143	5.26e-05	0.217	AGCAACCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	102	113	-	11.3143	5.26e-05	0.217	AGCAACCACAGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	102	113	-	11.3143	5.26e-05	0.217	AGCAACCACAGC
Alx1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	74	90	+	11.5325	5.26e-05	1	CGCGCTAATTATAGACG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	5	18	-	10.8077	5.26e-05	0.0217	CTTCATCCCCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	5	18	-	10.8077	5.26e-05	0.0217	CTTCATCCCCCGCA
EGR1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	69	82	+	10.8077	5.26e-05	0.0217	AACCCGCCTCCACT
HOXA13	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	52	61	+	11.7361	5.26e-05	1	CCAATAAAGT
HOXA13	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	54	63	-	11.7361	5.26e-05	1	CCAATAAAGT
HOXD13	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	26	35	-	11.6667	5.26e-05	1	CCAATTAAAT
HOXD13	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	89	+	11.6667	5.26e-05	1	CCAATTAAAT
HOXD13	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	89	+	11.6667	5.26e-05	1	CCAATTAAAT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	12.3846	5.26e-05	0.298	GGCACGTGGC
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	12.3846	5.26e-05	0.298	GGCACGTGGC
SP2	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	20	34	+	10.9483	5.26e-05	0.0125	GTCCCACCTTCCTAG
SP2	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	30	44	+	10.9483	5.26e-05	0.0125	TCTCCTCCCTCCCCT
SP2	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	60	74	+	10.9483	5.26e-05	0.0125	GCTCCGCTCCCCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	62	76	+	10.9483	5.26e-05	0.0125	TTCCCTCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	62	76	+	10.9483	5.26e-05	0.0125	TTCCCTCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	5	19	-	10.9483	5.26e-05	0.0125	CTTCCGCTCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	5	19	-	10.9483	5.26e-05	0.0125	CTTCCGCTCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	5	19	-	10.9483	5.26e-05	0.0125	CTTCCGCTCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	5	19	-	10.9483	5.26e-05	0.0125	CTTCCGCTCCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	5	19	-	10.9483	5.26e-05	0.0125	CTTCCGCTCCCTCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	81	95	-	10.9483	5.26e-05	0.0125	GTCCCACCTTCCTAG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	81	95	-	10.9483	5.26e-05	0.0125	GTCCCACCTTCCTAG
RFX4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	8	23	-	10.4394	5.26e-05	0.282	TGTCACCATGGGGACT
RFX4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	92	107	+	10.4394	5.26e-05	0.282	TGTCACCATGGGGACT
KLF14	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	17	30	-	9.44828	5.26e-05	0.0337	TGTTACGCCTCTTC
CTCF	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	15	33	+	9.27869	5.26e-05	0.118	CGCCCCGCAGAGGGTGGGC
CTCF	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	82	100	-	9.27869	5.26e-05	0.118	CGCCCCGCAGAGGGTGGGC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	35	48	+	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	35	48	+	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
XBP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	29	42	-	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
XBP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	29	42	-	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
XBP1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	47	60	+	10.3654	5.26e-05	0.508	GGGGACGCGTCAGT
XBP1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	55	68	-	10.3654	5.26e-05	0.508	GGGGACGCGTCAGT
XBP1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	73	86	+	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
XBP1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	67	80	-	10.3654	5.26e-05	0.508	TCCGCCACGTAATT
POU2F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	2	14	-	11.2586	5.26e-05	1	ACCATTTGCATCT
POU2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	2	14	-	11.2586	5.26e-05	1	ACCATTTGCATCT
POU2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	2	14	-	11.2586	5.26e-05	1	ACCATTTGCATCT
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	2	14	-	11.2586	5.26e-05	1	ACCATTTGCATCT
E2F8	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	48	59	+	5.80488	5.26e-05	0.631	TTTCCGGCCCAC
E2F8	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	57	68	-	5.80488	5.26e-05	0.631	TTTCCGGCCCAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	36	45	-	11.86	5.26e-05	0.821	ATTACGAAAT
SOX4	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	47	62	-	-11.197	5.26e-05	1	CAACAGTTACAGAGGT
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	26	35	-	11.1429	5.26e-05	0.243	CGTCACGAGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	26	35	-	11.1429	5.26e-05	0.243	CGTCACGAGA
FEV	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.8654	5.26e-05	0.131	ACAGGAAGTA
FEV	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.8654	5.26e-05	0.131	ACAGGAAGTA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	101	111	+	11.6939	5.27e-05	0.198	GGCTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	101	111	+	11.6939	5.27e-05	0.198	GGCTGACTCAC
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	101	111	+	11.6939	5.27e-05	0.198	GGCTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	101	111	+	11.6939	5.27e-05	0.198	GGCTGACTCAC
PAX5	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	61	79	+	10.9839	5.27e-05	0.147	GAAGCTGGCAGAGCAGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	49	67	-	10.9839	5.27e-05	0.147	GGGCGTCGCGGGGCGGGGC
SPIC	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	12	25	+	11.2817	5.27e-05	0.253	AAAATCAGGAGGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	90	103	-	11.2817	5.27e-05	0.253	AAAATCAGGAGGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	90	103	-	11.2817	5.27e-05	0.253	AAAATCAGGAGGCA
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	11.8364	5.27e-05	0.15	AGCACGTGCG
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	11.8364	5.27e-05	0.15	AGCACGTGCG
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	11.8364	5.27e-05	0.15	AGCACGTGCG
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	11.8364	5.27e-05	0.15	AGCACGTGCG
REL	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	51	60	+	11.4343	5.27e-05	0.297	CGGGAGTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	71	80	+	11.4343	5.27e-05	0.297	CGGGAGTTCC
REL	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	35	44	-	11.4343	5.27e-05	0.297	CGGGAGTTCC
REL	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	55	64	-	11.4343	5.27e-05	0.297	CGGGAGTTCC
ELF4	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	25	36	+	9.7541	5.27e-05	0.1	ATCCCGGAAACG
ELF4	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	24	35	-	9.7541	5.27e-05	0.1	CGCGCGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	90	-	9.7541	5.27e-05	0.1	ATCCCGGAAACG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	90	-	9.7541	5.27e-05	0.1	ATCCCGGAAACG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	90	-	9.7541	5.27e-05	0.1	ATCCCGGAAACG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	90	-	9.7541	5.27e-05	0.1	ATCCCGGAAACG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	17	32	+	10.7273	5.27e-05	0.039	TTCTCCCCACGCGCAT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	17	32	+	10.7273	5.27e-05	0.039	TTCTCCCCACGCGCAT
EGR4	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	83	98	-	10.7273	5.27e-05	0.039	TTCTCCCCACGCGCAT
ELF3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	42	54	-	8.98276	5.27e-05	0.153	CCGCCGGAAGTGT
ELF3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	61	73	+	8.98276	5.27e-05	0.153	CCGCCGGAAGTGT
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	88	98	-	11.9483	5.27e-05	0.902	TCCTGTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	44	64	+	9.58065	5.27e-05	0.176	TGTTCCTTTTTTTTTTTCATT
Spz1	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	37	47	-	11.6545	5.27e-05	0.77	ACAGTTACAGC
Spz1	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	100	110	+	11.6545	5.27e-05	0.77	ACAGTTACAGC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.4727	5.27e-05	0.106	TCCGGAAGCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	10	20	+	12.3061	5.27e-05	0.145	GGCAGCTGACA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	10	20	+	12.3061	5.27e-05	0.145	GGCAGCTGACA
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	108	+	12.3061	5.27e-05	0.145	AACAGCTGTCC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	21	35	-	10.9231	5.27e-05	0.848	CCCGCCCAGAGCGAC
CENPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	21	35	-	10.9231	5.27e-05	0.848	CCCGCCCAGAGCGAC
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	21	35	-	10.9231	5.27e-05	0.848	CCCGCCCAGAGCGAC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	21	35	-	10.9231	5.27e-05	0.848	CCCGCCCAGAGCGAC
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	97	108	+	3.98361	5.27e-05	0.598	TGACAAATGACA
ETV6	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	25	34	+	11.7885	5.28e-05	0.102	CGCGGAAATA
ETV6	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	81	90	-	11.7885	5.28e-05	0.102	CGCGGAAATA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	+	10.7213	5.28e-05	0.0641	CCCCCCTGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	-	10.7213	5.28e-05	0.0641	CCCCCCTGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	-	10.7213	5.28e-05	0.0641	CCCCCCTGGGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	-	10.7213	5.28e-05	0.0641	CCCCCCTGGGGGC
E2F1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	30	41	-	11.4426	5.28e-05	0.41	CATGGCGCCACG
E2F1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	74	85	+	11.4426	5.28e-05	0.41	CATGGCGCCACG
EHF	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	20	31	-	10.8033	5.28e-05	0.126	AACGAGGAAATG
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	47	56	+	10.1455	5.28e-05	0.239	ATCACCTGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	47	56	+	10.1455	5.28e-05	0.239	ATCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	47	56	+	10.1455	5.28e-05	0.239	ATCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	47	56	+	10.1455	5.28e-05	0.239	ATCACCTGAG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	14	28	-	11.234	5.28e-05	0.32	CCGAGTGATGTCAGC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	14	28	-	11.234	5.28e-05	0.32	CCGAGTGATGTCAGC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	8	21	-	6.38776	5.28e-05	0.0719	GAGGCGCTGGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	8	21	-	6.38776	5.28e-05	0.0719	GAGGCGCTGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	15	28	-	6.38776	5.28e-05	0.0719	GGGAGGCACAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	15	28	-	6.38776	5.28e-05	0.0719	GGGAGGCACAGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	25	38	-	6.38776	5.28e-05	0.0719	GAGGCGCTGGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	25	38	-	6.38776	5.28e-05	0.0719	GAGGCGCTGGGAGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	37	50	-	6.38776	5.28e-05	0.0719	GGGAGGCACAGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	95	108	-	6.38776	5.28e-05	0.0719	GGGGGCATGAGGGC
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	103	+	11.4727	5.28e-05	0.655	CACAGCTGTG
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	103	-	11.4727	5.28e-05	0.655	CACAGCTGTG
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	63	77	+	10.8727	5.28e-05	0.312	CGAGAGAGAAAGAGA
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	91	105	+	10.8727	5.28e-05	0.312	CGAGAGAGAAAGAGA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	+	11.551	5.28e-05	0.0863	GGCCCCGAGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	+	11.551	5.28e-05	0.0863	GGCCCCGAGGCT
TFAP2C	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	25	36	+	11.551	5.28e-05	0.0863	CGGCTGAGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	18	29	-	11.551	5.28e-05	0.0863	CGCCGGCAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	18	29	-	11.551	5.28e-05	0.0863	CGCCGGCAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	-	11.551	5.28e-05	0.0863	GGCCCCGAGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	-	11.551	5.28e-05	0.0863	GGCCCCGAGGCT
PROX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	30	41	-	9.38182	5.28e-05	1	GAAGACGCGTTG
PROX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	30	41	-	9.38182	5.28e-05	1	GAAGACGCGTTG
PROX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	30	41	-	9.38182	5.28e-05	1	GAAGACGCGTTG
PROX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	30	41	-	9.38182	5.28e-05	1	GAAGACGCGTTG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	55	74	-	4.52294	5.28e-05	0.058	ACAACACACAACACATGCCT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	17	36	+	4.52294	5.28e-05	0.058	CCAGCAAACACCAGCTCCTC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	17	36	+	4.52294	5.28e-05	0.058	CCAGCAAACACCAGCTCCTC
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	63	82	+	4.52294	5.28e-05	0.058	ACCCGCACCCCACCCCCAGA
EGR3	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	54	68	+	7.17241	5.28e-05	0.0383	CCGCGCCCCCACGCT
EGR3	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	47	61	-	7.17241	5.28e-05	0.0383	CCGCGCCCCCACGCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	83	97	-	7.17241	5.28e-05	0.0383	TCTCGCCCGCGCGCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	83	97	-	7.17241	5.28e-05	0.0383	TCTCGCCCGCGCGCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	83	97	-	7.17241	5.28e-05	0.0383	TCTCGCCCGCGCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	83	97	-	7.17241	5.28e-05	0.0383	TCTCGCCCGCGCGCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	103	113	-	11.4098	5.28e-05	0.0592	CAGGAAGCGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	103	113	-	11.4098	5.28e-05	0.0592	CAGGAAGCGAG
Vdr	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	11	26	-	4.90164	5.28e-05	0.833	GAGTTCTGCGGGGGCG
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	38	53	+	4.90164	5.28e-05	0.833	GAGGGCAGGAGGTCCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	38	53	+	4.90164	5.28e-05	0.833	GAGGGCAGGAGGTCCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	30	45	-	4.90164	5.28e-05	0.833	GAGGGCAGGAGGTCCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	30	45	-	4.90164	5.28e-05	0.833	GAGGGCAGGAGGTCCA
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	15	27	-	10.8852	5.28e-05	0.0586	TGCCGGGCGGGGG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	88	100	+	10.8852	5.28e-05	0.0586	TGCCGGGCGGGGG
MAFF	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	43	60	-	11.3333	5.28e-05	0.965	CCAGCCTCATCAGAATTC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	5	25	-	10.1224	5.28e-05	0.0172	GGAGGGGGGGGGGGCGTGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	31	51	-	10.1224	5.28e-05	0.0172	GGGGCAGGCAGGCCTGGGGGC
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	35	55	-	10.1224	5.28e-05	0.0172	GGAGGGGGGGGGGGCGTGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	41	61	-	10.1224	5.28e-05	0.0172	GGAGGGGGGGGGGGCGTGGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	54	74	+	10.1224	5.28e-05	0.0172	GGAGGGGGGGGGGGCGTGGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	60	80	+	10.1224	5.28e-05	0.0172	GGAGGGGGGGGGGGCGTGGCA
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	5	16	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	5	16	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	5	16	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	5	16	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	12	23	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	2	13	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	2	13	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	19	30	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	19	30	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	19	30	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	19	30	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	8	19	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	15	26	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	15	26	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	16	27	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	16	27	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	16	27	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	16	27	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	31	42	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	31	42	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	31	42	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	31	42	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	21	32	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	33	44	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	23	34	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	23	34	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	26	37	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	26	37	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	26	37	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	26	37	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	28	39	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	29	40	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	29	40	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	30	41	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	31	42	-	11.2763	5.28e-05	0.0301	GCACCACCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	32	43	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	44	55	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	44	55	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	44	55	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	46	57	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	46	57	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	47	58	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	47	58	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	47	58	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	47	58	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	48	59	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	49	60	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	39	50	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	51	62	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	51	62	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	51	62	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	51	62	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	41	52	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	54	65	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	46	57	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	46	57	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	58	69	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	58	69	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	50	61	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	63	74	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	63	74	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	53	64	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	65	76	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	55	66	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	60	71	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	71	82	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	72	83	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	84	+	11.2763	5.28e-05	0.0301	GCACCACCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	74	85	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	65	76	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	65	76	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	65	76	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	66	77	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	66	77	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	66	77	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	66	77	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	73	84	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	96	107	+	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
SP8	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	99	110	-	11.2763	5.28e-05	0.0301	GCCCCGCCCCCG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	6	17	+	11.3	5.28e-05	0.217	GGCGACCACGCT
GLIS2	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	28	-	8.83607	5.28e-05	0.185	GCGCCCCCGCGGCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	52	62	+	11.4309	5.28e-05	0.0202	CCCACACCCTT
SP3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	11	21	-	11.4309	5.28e-05	0.0202	CCCACACCCTT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	25	35	-	11.4309	5.28e-05	0.0202	ATCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	25	35	-	11.4309	5.28e-05	0.0202	ATCCCGCCCCC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	-	10.5862	5.28e-05	0.0554	TGCCTGTCGGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	+	10.5862	5.28e-05	0.0554	ACCCCACGGGGCC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	+	10.5862	5.28e-05	0.0554	TGCCTGTCGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	-	10.5862	5.28e-05	0.0554	TGCCTGTCGGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	+	10.5862	5.28e-05	0.0554	TGCCTGTCGGGCC
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	16	26	+	11.9455	5.28e-05	0.721	ATGCTCTCAGG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	84	94	-	11.9455	5.28e-05	0.721	TGGCTCTCAGG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	31	41	+	10.8727	5.28e-05	0.254	ACCCGGAACTC
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	31	41	+	10.8727	5.28e-05	0.254	ACCCGGAACTC
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	31	41	+	10.8727	5.28e-05	0.254	ACCCGGAACTC
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	31	41	+	10.8727	5.28e-05	0.254	ACCCGGAACTC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	68	78	+	11.7755	5.28e-05	0.139	GGCAGGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	68	78	+	11.7755	5.28e-05	0.139	GGCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	68	78	+	11.7755	5.28e-05	0.139	GGCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	68	78	+	11.7755	5.28e-05	0.139	GGCAGGTGACA
Dlx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	17	26	-	10.0439	5.28e-05	1	AATAATTACC
Dlx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	17	26	-	10.0439	5.28e-05	1	AATAATTACC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	74	88	-	11.2162	5.28e-05	0.182	GGAGGAGAGAAGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	74	88	-	11.2162	5.28e-05	0.182	GGAGGAGAGAAGGCA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	8	18	+	11.7636	5.29e-05	0.0593	CCGCTTCCTGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	8	18	+	11.7636	5.29e-05	0.0593	CCGCTTCCTGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	8	18	+	11.7636	5.29e-05	0.0593	CCGCTTCCTGA
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	8	18	+	11.7636	5.29e-05	0.0593	CCGCTTCCTGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	8	18	+	11.7636	5.29e-05	0.0593	CCGCTTCCTGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	65	75	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	65	75	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	67	77	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	67	77	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	67	77	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	67	77	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	67	77	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	84	94	+	11.7636	5.29e-05	0.0593	CTGCTTCCTGT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	33	47	+	8.77143	5.29e-05	0.106	GGCCTCCTGGCGCGG
ZIC3	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	39	53	+	8.77143	5.29e-05	0.106	GCCCACCCCCGGCTT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	46	60	-	8.77143	5.29e-05	0.106	GGCCTCCTGGCGCGG
ZIC3	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	62	76	-	8.77143	5.29e-05	0.106	GCCCACCCCCGGCTT
Hoxb5	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	42	57	-	11.4935	5.29e-05	1	CATTTAATTAACAAAA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	78	91	+	11.3485	5.29e-05	0.0566	TGAGGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	78	91	+	11.3485	5.29e-05	0.0566	TGAGGCCTGGCCTG
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	29	40	-	3.67241	5.29e-05	0.296	TGCCACATGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	25	36	+	3.67241	5.29e-05	0.296	TGCCACATGCCC
STAT1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	75	85	+	11.0545	5.29e-05	0.351	TTTCTGAGAAG
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr6:30840693..30840807,+__1814.1.0.0	47	64	-	11.3273	5.29e-05	0.936	GATATCTCAAAAGCCCAG
HINFP	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	24	35	-	11.197	5.29e-05	0.109	TCGGGTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	65	76	+	11.197	5.29e-05	0.109	CCGCTTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	65	76	+	11.197	5.29e-05	0.109	CCGCTTCCGCGT
Foxj3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	79	95	-	11.6364	5.29e-05	1	GGAATGTAAACAGTGTG
Foxj3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	79	95	-	11.6364	5.29e-05	1	GGAATGTAAACAGTGTG
GLI2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	2	13	-	10.8621	5.29e-05	0.33	ACGGCCACCCAG
GLI2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	102	113	+	10.8621	5.29e-05	0.33	ACGGCCACCCAG
MLXIPL	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	12.1212	5.29e-05	0.275	GACACGTGGT
MLXIPL	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	12.1212	5.29e-05	0.275	GACACGTGGT
Mafb	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	53	64	+	11.6404	5.29e-05	0.865	TTCTTGCTGACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	33	50	+	-12.3289	5.29e-05	0.0469	GATAGAAAGGAAGAAACG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	33	50	+	-12.3289	5.29e-05	0.0469	GATAGAAAGGAAGAAACG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	33	50	+	-12.3289	5.29e-05	0.0469	GATAGAAAGGAAGAAACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	33	50	+	-12.3289	5.29e-05	0.0469	GATAGAAAGGAAGAAACG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	42	+	1.89394	5.29e-05	0.194	GCGTGACGTCACTG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	42	+	1.89394	5.29e-05	0.194	GCGTGACGTCACTG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	42	+	1.89394	5.29e-05	0.194	GCGTGACGTCACTG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	42	+	1.89394	5.29e-05	0.194	GCGTGACGTCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	2	14	-	11.2459	5.29e-05	0.359	GTGGCTGGCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	19	31	-	11.2459	5.29e-05	0.359	GTGTCTATCACGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	88	100	-	11.2459	5.29e-05	0.359	CAGGCTCCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	88	100	-	11.2459	5.29e-05	0.359	CAGGCTCCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	88	100	-	11.2459	5.29e-05	0.359	CAGGCTCCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	25	37	+	11.2459	5.29e-05	0.359	GTGTCTATCACGC
NRL	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	13	23	+	11.0577	5.29e-05	0.823	GTCATGCTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	39	49	-	11.0577	5.29e-05	0.823	GTCATGCTGAC
ELF5	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	38	48	-	11.6364	5.29e-05	0.139	CCCAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	67	77	+	11.6364	5.29e-05	0.139	CCCAGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	67	77	+	11.6364	5.29e-05	0.139	CCCAGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	67	77	+	11.6364	5.29e-05	0.139	CCCAGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	67	77	+	11.6364	5.29e-05	0.139	CCCAGGAAGTG
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	95	108	+	11.7759	5.29e-05	0.284	TTTAAAGGAAGTAG
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	95	108	+	11.7759	5.29e-05	0.284	TTTAAAGGAAGTAG
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	22	31	+	12.5918	5.29e-05	0.422	CCCACCTGCA
TCF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	22	31	+	12.5918	5.29e-05	0.422	CCCACCTGCA
REST	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	14	34	-	5.79592	5.29e-05	0.219	GCCGCCACTTCCGAGAGCGCC
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	29	49	+	5.79592	5.29e-05	0.219	CTCAGATCCGGGGACTGCGGA
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	29	49	+	5.79592	5.29e-05	0.219	CTCAGATCCGGGGACTGCGGA
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	81	101	+	5.79592	5.29e-05	0.219	GCCGCCACTTCCGAGAGCGCC
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	81	101	+	5.79592	5.29e-05	0.219	GCCGCCACTTCCGAGAGCGCC
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	30	41	-	3.96721	5.29e-05	0.598	TGTCAGCTCTCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	30	41	-	3.96721	5.29e-05	0.598	TGTCAGCTCTCA
PKNOX2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	46	-	3.96721	5.29e-05	0.598	GGGCAGCTGCCA
Rarg	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	41	56	-	-1.14286	5.29e-05	0.877	GAGGTCAATGGTAGAA
NR2C2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	3	17	-	9.94286	5.29e-05	0.122	CGGGGGCAGGGGCAG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	98	112	+	9.94286	5.29e-05	0.122	CGGGGGCAGGGGCAG
JUN	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	31	43	+	11.0408	5.29e-05	0.303	GCAGTGATGTCAG
JUN	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	63	75	-	11.0408	5.29e-05	0.303	GCAGTGATGTCAG
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	35	49	-	10.8871	5.29e-05	1	CTGACTCATGCAAAT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	23	37	+	10.8871	5.29e-05	1	CTGACTCATGCAAAT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	15	24	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	31	40	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	34	43	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	66	75	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	74	83	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	74	83	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	95	104	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	105	114	-	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	11	20	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	36	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	49	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	52	61	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	69	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	69	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	72	81	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	108	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	108	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	108	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	108	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	108	+	11.6939	5.29e-05	0.0205	CTCCCACCCC
CEBPE	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	-	11.8364	5.29e-05	0.721	GTTGTGCAAT
CEBPE	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	-	11.8364	5.29e-05	0.721	GTTGTGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	+	11.8364	5.29e-05	0.721	GTTGTGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	+	11.8364	5.29e-05	0.721	GTTGTGCAAT
CEBPE	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	+	11.8364	5.29e-05	0.721	GTTGTGCAAT
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	5	21	+	4.70909	5.3e-05	0.027	CGCTCCCCGCCCCTTCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	13	29	+	4.70909	5.3e-05	0.027	CCCGACACGCCTCCAAT
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	27	43	+	4.70909	5.3e-05	0.027	CAGCCCCCGCCCTCGCA
SP4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	86	102	-	4.70909	5.3e-05	0.027	CCCGACACGCCTCCAAT
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	12	24	-	11.7551	5.3e-05	0.427	CACAGGTCATCTG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	12	24	-	11.7551	5.3e-05	0.427	CACAGGTCATCTG
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	79	91	-	11.7551	5.3e-05	0.427	CACAGGTCATCTG
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	15	31	+	10.3163	5.3e-05	0.366	AGGTCACCGCAGGGGAA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	15	31	+	10.3163	5.3e-05	0.366	AGGTCACCGCAGGGGAA
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	43	52	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	43	52	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	43	52	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	43	52	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	96	105	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	96	105	+	11.8171	5.3e-05	0.472	ATCAGCCCAG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
ELK1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	10.8085	5.3e-05	0.0883	TCCGGAAGCC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	73	83	-	11.6379	5.3e-05	0.263	TCCTGTGGTCG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	28	38	+	11.6379	5.3e-05	0.263	TCCTGTGGTCG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	21	34	-	7.08511	5.3e-05	0.0995	TCCTCCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	81	94	+	7.08511	5.3e-05	0.0995	TCCTCCCCGCCGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	81	94	+	7.08511	5.3e-05	0.0995	TCCTCCCCGCCGGG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	81	94	+	7.08511	5.3e-05	0.0995	TCCTCCCCGCCGGG
ZIC1	WILDTYPE__mrna.noflip.NA__chrX:132887704..132887818,-__1128.1.0.0	91	104	+	7.08511	5.3e-05	0.0995	TAAACCCTGTGGCG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	79	-	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	81	-	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	81	-	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	81	-	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	81	-	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	98	107	-	11.6885	5.3e-05	0.237	TCTCACGTGG
Arntl	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	43	+	11.6885	5.3e-05	0.237	AGGCACGTGG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	68	+	11.6885	5.3e-05	0.237	AGGCACGTGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	4	17	+	9.43103	5.3e-05	0.0337	GTTCCCGCCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	4	17	+	9.43103	5.3e-05	0.0337	GTTCCCGCCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	4	17	+	9.43103	5.3e-05	0.0337	GTTCCCGCCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	8	21	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	8	21	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	8	21	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	8	21	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	50	63	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	50	63	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	50	63	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	50	63	-	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
KLF14	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	94	107	+	9.43103	5.3e-05	0.0337	GCCCCCGCCTCCTT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	32	45	-	11.7308	5.3e-05	0.223	CTCGAATGACTCAC
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	35	51	+	4.01639	5.3e-05	0.563	AGCTCCGGGTAGGGTCA
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	5	15	-	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	5	15	-	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	13	23	-	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	13	23	-	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	50	60	+	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	100	110	+	11.5172	5.3e-05	0.0475	GGGCGGGGGAA
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	29	39	+	11.0408	5.3e-05	0.297	GGGCATGTGGC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	26	36	-	11.0408	5.3e-05	0.297	GGGCATGTGGC
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	99	112	+	11.2419	5.3e-05	0.411	GTCCCTGGAGGGTT
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	99	112	+	11.2419	5.3e-05	0.411	GTCCCTGGAGGGTT
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	99	112	+	11.2419	5.3e-05	0.411	GTCCCTGGAGGGTT
TFE3	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	-	11.3878	5.3e-05	0.13	GCCACGTGAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	13	31	-	9.2623	5.3e-05	0.118	CCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	13	31	-	9.2623	5.3e-05	0.118	CCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	47	65	-	9.2623	5.3e-05	0.118	CCGCCGCGCGGGGGAGCTC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	48	66	-	9.2623	5.3e-05	0.118	CCCCCAGCAGGGGAAAAAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	48	66	-	9.2623	5.3e-05	0.118	CCCCCAGCAGGGGAAAAAA
FOSL1	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	+	11.3091	5.3e-05	0.204	TGTGAGTCACT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	+	11.3091	5.3e-05	0.204	TGTGAGTCACT
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	23	33	-	11.7551	5.3e-05	0.139	CGCACGTGATC
USF2	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	92	+	11.7551	5.3e-05	0.139	CGCACGTGATC
Arid3b	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	39	49	+	11.2222	5.3e-05	1	CTATTAATTTA
Arid3b	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	22	32	-	11.2222	5.3e-05	1	AAATTAATAAT
Arid3b	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	54	64	-	11.2222	5.3e-05	1	CTATTAATTTA
NKX6-2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	-	9.94	5.3e-05	1	GTAATTAA
LBX1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	14	21	+	11.2698	5.3e-05	1	ATAATTAG
LBX1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	62	+	11.2698	5.3e-05	1	ATAATTAG
NKX6-2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	+	9.94	5.3e-05	1	GTAATTAA
NKX6-2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	+	9.94	5.3e-05	1	GTAATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	+	9.94	5.3e-05	1	GTAATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	+	9.94	5.3e-05	1	GTAATTAA
NKX6-2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	+	9.94	5.3e-05	1	GTAATTAA
LBX1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	78	85	-	11.2698	5.3e-05	1	ATAATTAG
RXRG	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	53	66	+	2.70213	5.3e-05	0.48	CAGGGCAGGGTTCA
USF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	94	104	+	11.4694	5.3e-05	0.182	GCCACATGACG
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	94	104	+	11.4694	5.3e-05	0.182	GCCACATGACG
TFEB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	94	103	+	11.8462	5.3e-05	0.15	GCCACATGAT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	94	103	+	11.8462	5.3e-05	0.15	GCCACATGAT
TFEB	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	11.8462	5.3e-05	0.15	ACCACGTGAG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	75	95	+	9.56452	5.3e-05	0.176	TGTTTCTTTCAGTGTCATATG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	96	110	+	10.931	5.3e-05	0.0126	CTCCCTCCTCACGCG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	96	110	+	10.931	5.3e-05	0.0126	CTCCCTCCTCACGCG
SP2	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	5	19	-	10.931	5.3e-05	0.0126	CTCCCTCCTCACGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr6:58287638..58287752,-__753.1.0.0	25	39	-	10.931	5.3e-05	0.0126	GTACCGCCTCCAAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	46	60	-	10.931	5.3e-05	0.0126	GCCCCACCCCAGTGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	46	60	-	10.931	5.3e-05	0.0126	GCCCCACCCCAGTGA
PROX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	41	52	-	9.36364	5.3e-05	1	TAAGGCTCCTTC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	23	33	-	6.44898	5.3e-05	0.296	AATGATTCATT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	25	35	-	6.44898	5.3e-05	0.296	TATGAATCATC
NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	104	114	+	6.44898	5.3e-05	0.296	AATGATTCATT
EGR3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	40	54	+	7.15517	5.31e-05	0.0383	GCGCGCCCCCGCCGA
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	55	69	-	7.15517	5.31e-05	0.0383	TCCCAGCCACGCACT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	55	69	-	7.15517	5.31e-05	0.0383	TCCCAGCCACGCACT
EGR3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	61	75	-	7.15517	5.31e-05	0.0383	GCGCGCCCCCGCCGA
EGR2	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	29	39	-	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	41	51	-	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	41	51	-	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	64	74	+	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	64	74	+	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	76	86	+	10.0345	5.31e-05	0.0818	ACGCCTGCGCG
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	38	50	+	8.9697	5.31e-05	0.258	GGGGGAAACTCCT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	3	15	-	8.9697	5.31e-05	0.258	GGGGGAAACTCCT
Gfi1b	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	5	15	+	11.7069	5.31e-05	0.521	GAACCACAGCC
Gfi1b	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	100	110	-	11.7069	5.31e-05	0.521	GAACCACAGCC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	77	91	+	10.8182	5.31e-05	0.109	TCCTCCCCACAGTGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	83	97	-	10.8182	5.31e-05	0.109	GCCTCCCCACTGCTT
XBP1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	45	58	-	10.3462	5.31e-05	0.508	CGTGCCACGTGAGC
MYF6	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	-	11.1515	5.31e-05	1	GACAGCTGCT
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	-	11.1515	5.31e-05	1	GACAGCTGCT
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	-	11.1515	5.31e-05	1	GACAGCTGCT
ATF7	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	79	92	+	8.17143	5.31e-05	0.17	CAGTGACGCCATCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	-	10.7049	5.31e-05	0.0641	ACCCCCCCGGGGC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	+	10.7049	5.31e-05	0.0641	CCCCCCGCAGGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	30	43	-	10.7885	5.31e-05	0.0218	AGCCCGCCCTCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	30	43	-	10.7885	5.31e-05	0.0218	AGCCCGCCCTCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	88	+	10.7885	5.31e-05	0.0218	TCCCCACCCCTTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	88	+	10.7885	5.31e-05	0.0218	TCCCCACCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	88	+	10.7885	5.31e-05	0.0218	TCCCCACCCCTTCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	86	99	+	10.7885	5.31e-05	0.0218	CCCCCACCTTCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	86	99	+	10.7885	5.31e-05	0.0218	CCCCCACCTTCGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	86	99	+	10.7885	5.31e-05	0.0218	CCCCCACCTTCGCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	86	99	+	10.7885	5.31e-05	0.0218	CCCCCACCTTCGCT
EMX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	73	82	-	10.5752	5.31e-05	1	CTTAATGAGC
EMX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	73	82	-	10.5752	5.31e-05	1	CTTAATGAGC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	55	65	+	11.5636	5.31e-05	0.0702	GGCCCCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	55	65	+	11.5636	5.31e-05	0.0702	GGCCCCAGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	2	12	-	11.5636	5.31e-05	0.0702	GGCCCCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	14	24	-	11.5636	5.31e-05	0.0702	GGCCCCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	14	24	-	11.5636	5.31e-05	0.0702	GGCCCCAGGCC
EMX2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	11.5106	5.31e-05	1	GGTAATTAAG
EMX2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	11.5106	5.31e-05	1	GGTAATTAAG
Gata1	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	8	18	+	11.8776	5.31e-05	1	ATCTTATCTAC
Gata1	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	101	111	-	11.8776	5.31e-05	1	ATCTTATCTAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	+	11.8846	5.31e-05	0.805	GTTGCACAAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	+	11.8846	5.31e-05	0.805	GTTGCACAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	+	11.8846	5.31e-05	0.805	GTTGCACAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	-	11.8846	5.31e-05	0.805	GTTGCACAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	-	11.8846	5.31e-05	0.805	GTTGCACAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	73	82	+	11.8846	5.31e-05	0.805	TTTGCGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	73	82	+	11.8846	5.31e-05	0.805	TTTGCGCAAC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	1	11	-	11.7931	5.31e-05	0.0622	AAGCGGGAGCA
E2F6	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	52	62	-	11.7931	5.31e-05	0.0622	AAGAGGGAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	52	62	-	11.7931	5.31e-05	0.0622	AAGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	28	38	+	11.7931	5.31e-05	0.0622	AAGCGGGAGCA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	28	38	+	11.7931	5.31e-05	0.0622	AAGCGGGAGCA
E2F6	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	53	63	+	11.7931	5.31e-05	0.0622	AAGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	53	63	+	11.7931	5.31e-05	0.0622	AAGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	53	63	+	11.7931	5.31e-05	0.0622	AAGAGGGAAGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	-	10.8689	5.31e-05	0.0586	CGCCCAAAGGGCG
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	+	10.5517	5.31e-05	0.249	ATCATGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	-	10.5517	5.31e-05	0.249	ATCATGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	-	10.5517	5.31e-05	0.249	ATCATGTGAT
Foxq1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	38	48	-	11.9694	5.31e-05	1	AATAGTTTATG
Foxq1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	38	48	-	11.9694	5.31e-05	1	AATAGTTTATG
Foxq1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	38	48	-	11.9694	5.31e-05	1	AATAGTTTATG
PAX9	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	69	85	+	1.56364	5.31e-05	0.501	GGCCACGGAACGCTGCC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	15	26	-	11.6364	5.31e-05	0.055	CGCCCGCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	28	39	+	11.6364	5.31e-05	0.055	CGCCCACGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	28	39	+	11.6364	5.31e-05	0.055	CGCCCACGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	30	-	11.6364	5.31e-05	0.055	CCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	30	-	11.6364	5.31e-05	0.055	CCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	30	-	11.6364	5.31e-05	0.055	CCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	30	-	11.6364	5.31e-05	0.055	CCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	26	37	-	11.6364	5.31e-05	0.055	AGCCGCGGGGCA
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	-	11.6364	5.31e-05	0.055	TGGCCCCGGGCT
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	62	73	+	11.6364	5.31e-05	0.055	CCCCTCCAGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	+	11.6364	5.31e-05	0.055	TGGCCCCGGGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	78	89	+	11.6364	5.31e-05	0.055	AGCCGCGGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	97	108	-	11.6364	5.31e-05	0.055	CGCCCGCGGCCC
GBX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	+	11.7612	5.31e-05	1	GCCAATTACG
GBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	+	11.7612	5.31e-05	1	GCCAATTACG
GBX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	-	11.7612	5.31e-05	1	GCCAATTACG
GBX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	-	11.7612	5.31e-05	1	GCCAATTACG
GBX1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	+	11.7612	5.31e-05	1	GCCAATTACG
GBX1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	-	11.7612	5.31e-05	1	GCCAATTACG
DMRT3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	76	86	-	11.7541	5.31e-05	1	AAAGTATCAAG
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	1	10	+	12.1897	5.31e-05	0.659	CCATTGTCCT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	1	10	+	12.1897	5.31e-05	0.659	CCATTGTCCT
Sox3	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	6	15	-	12.1897	5.31e-05	0.659	CTTTTGTCTG
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	25	36	-	8.7156	5.31e-05	0.848	TGGCAGCCGACA
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	25	36	-	8.7156	5.31e-05	0.848	TGGCAGCCGACA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.6364	5.31e-05	0.114	ACCGGAAGGC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.6364	5.31e-05	0.114	ACCGGAAGGC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.6364	5.31e-05	0.114	ACCGGAAGGC
CREB3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	64	77	+	10.2857	5.31e-05	0.252	TGGCGACGTCAGAG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	84	97	+	10.2857	5.31e-05	0.252	TGGCGACGTCAGAG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	84	97	+	10.2857	5.31e-05	0.252	TGGCGACGTCAGAG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	84	97	+	10.2857	5.31e-05	0.252	TGGCGACGTCAGAG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	84	97	+	10.2857	5.31e-05	0.252	TGGCGACGTCAGAG
PAX5	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	6	24	+	10.9677	5.31e-05	0.147	AGGCGCAGCAGAGGGCGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	31	49	+	10.9677	5.31e-05	0.147	CGGGGCGGGGAGCCGAGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	31	49	+	10.9677	5.31e-05	0.147	CGGGGCGGGGAGCCGAGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	31	49	+	10.9677	5.31e-05	0.147	CGGGGCGGGGAGCCGAGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	31	49	+	10.9677	5.31e-05	0.147	CGGGGCGGGGAGCCGAGGC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	61	79	-	10.9677	5.31e-05	0.147	GGGCGCGCCCGGGTGTGTC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	61	79	-	10.9677	5.31e-05	0.147	GGGCGCGCCCGGGTGTGTC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	91	109	-	10.9677	5.31e-05	0.147	AGGCGCAGCAGAGGGCGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	91	109	-	10.9677	5.31e-05	0.147	AGGCGCAGCAGAGGGCGGC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	19	30	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	19	30	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	58	69	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	58	69	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	58	69	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	58	69	+	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	40	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	40	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	40	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	40	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	40	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	90	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	90	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	90	-	9.72131	5.31e-05	0.1	GAAGCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	93	104	-	9.72131	5.31e-05	0.1	TACGCGGAAGCC
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	93	104	-	9.72131	5.31e-05	0.1	TACGCGGAAGCC
CREB3L1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	17	30	+	9.18182	5.32e-05	0.298	CTGACACGTGGGCG
GLIS2	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	32	45	+	8.81967	5.32e-05	0.185	CGCCCCCAGCTTCG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	37	51	+	8.75714	5.32e-05	0.106	TCCCTCCCGCTGAAA
ZIC3	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	29	43	-	8.75714	5.32e-05	0.106	GGAGCCCCGCAGTGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	72	86	+	8.75714	5.32e-05	0.106	GGAGCCCCGCAGTGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	72	86	+	8.75714	5.32e-05	0.106	GGAGCCCCGCAGTGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	72	86	+	8.75714	5.32e-05	0.106	GGAGCCCCGCAGTGC
Foxd3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	73	84	+	11.7065	5.32e-05	1	GAATGTTGTTGT
Foxd3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	73	84	+	11.7065	5.32e-05	1	GAATGTTGTTGT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	-	10.569	5.32e-05	0.0554	GCCCCGCCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	-	10.569	5.32e-05	0.0554	GCCCCGCCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	-	10.569	5.32e-05	0.0554	GCCCCGCCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	-	10.569	5.32e-05	0.0554	GCCCCGCCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	+	10.569	5.32e-05	0.0554	CCCCCTCTGGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	+	10.569	5.32e-05	0.0554	CCCCCTCTGGGGA
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	53	68	+	-1.16327	5.32e-05	0.877	CGGTTTAAAAGGGCGT
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	53	68	+	-1.16327	5.32e-05	0.877	CGGTTTAAAAGGGCGT
Rarg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	53	68	+	-1.16327	5.32e-05	0.877	CGGTTTAAAAGGGCGT
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	27	38	+	10.5816	5.32e-05	0.177	GGGCTGGGGTCT
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	27	38	+	10.5816	5.32e-05	0.177	GGGCTGGGGTCT
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	27	38	+	10.5816	5.32e-05	0.177	GGGCTGGGGTCT
LBX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	10.5254	5.32e-05	1	ACTAATTAGA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	8	23	+	10.7091	5.32e-05	0.039	CTAGGCCCCCGCCCCC
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	+	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	+	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	-	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	-	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	+	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	+	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	+	11.1915	5.32e-05	0.204	GCTGACTCACT
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	+	11.1915	5.32e-05	0.204	GCTGACTCACT
Hoxd8	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	28	44	-	11.25	5.32e-05	1	CAGTTAATTATTAACAT
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	55	69	+	10.8545	5.32e-05	0.312	TAAAGGGGAAAGAGG
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	80	94	+	10.8545	5.32e-05	0.312	AGGAAGAGAAACTAC
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	80	94	+	10.8545	5.32e-05	0.312	AGGAAGAGAAACTAC
SP4	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	1	17	+	4.69091	5.32e-05	0.027	TAGACTCCACCCCCTGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	14	30	-	4.69091	5.32e-05	0.027	ACAACTCCGCCCACGAG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	14	30	-	4.69091	5.32e-05	0.027	ACAACTCCGCCCACGAG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	14	30	-	4.69091	5.32e-05	0.027	ACAACTCCGCCCACGAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	14	30	-	4.69091	5.32e-05	0.027	ACAACTCCGCCCACGAG
SP4	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	25	41	-	4.69091	5.32e-05	0.027	GTGGCTCCTCCTCCTTC
SP4	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	85	101	+	4.69091	5.32e-05	0.027	ACAACTCCGCCCACGAG
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	12.3485	5.32e-05	0.297	TCCACGTGAC
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	12.3485	5.32e-05	0.297	TCCACGTGAC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	12.3485	5.32e-05	0.297	TCCACGTGAC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	12.3485	5.32e-05	0.297	TCCACGTGAC
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	80	96	-	0.772727	5.32e-05	0.514	AATGTCAAGGTGACTGT
NRF1	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	11	21	+	10.6545	5.32e-05	0.0187	GCACGCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	101	111	+	10.6545	5.32e-05	0.0187	GCACGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	41	51	-	10.6545	5.32e-05	0.0187	GCACGCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	41	51	-	10.6545	5.32e-05	0.0187	GCACGCGCGCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	57	68	-	11.5161	5.32e-05	0.281	ACTACCACCGTG
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	57	68	-	11.5161	5.32e-05	0.281	ACTACCACCGTG
RREB1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	18	37	-	4.49541	5.32e-05	0.0582	ACCCCCACCAGCACGCGCGC
RREB1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	91	110	-	4.49541	5.32e-05	0.0582	ACCCCCACCAGCACGCGCGC
RREB1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	5	24	+	4.49541	5.32e-05	0.0582	ACCCCCACCAGCACGCGCGC
RREB1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	78	97	+	4.49541	5.32e-05	0.0582	ACCCCCACCAGCACGCGCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	32	42	+	11	5.32e-05	0.0196	GACCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	32	42	+	11	5.32e-05	0.0196	GACCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	48	58	+	11	5.32e-05	0.0196	GCCAGGCCCAC
KLF16	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	57	67	-	11	5.32e-05	0.0196	GCCAGGCCCAC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	40	50	-	12.3061	5.32e-05	0.174	CGCAGCTGCCC
Tcf12	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	42	52	-	12.3061	5.32e-05	0.174	CACAGCTGAGG
NOTO	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.28	5.32e-05	1	ACTAATTAGA
TBR1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	48	57	-	11.6809	5.32e-05	0.898	AGGTGAGAAC
TBR1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	105	114	-	11.6809	5.32e-05	0.898	AGGTGAGAAC
TBR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	1	10	+	11.6809	5.32e-05	0.898	AGGTGAGAAC
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	1	10	+	11.6809	5.32e-05	0.898	AGGTGAGAAC
TBR1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	58	67	+	11.6809	5.32e-05	0.898	AGGTGAGAAC
E2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	35	50	-	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	35	50	-	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	35	50	-	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	35	50	-	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	59	74	+	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	59	74	+	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	59	74	+	2.04878	5.32e-05	1	AACCATGCGCCAAATT
E2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	59	74	+	2.04878	5.32e-05	1	AACCATGCGCCAAATT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	+	11.6	5.32e-05	0.0893	GCCCCCGGGGCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	47	+	11.6	5.32e-05	0.0893	CGCCCCCAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	+	11.6	5.32e-05	0.0893	GCCCCCGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	+	11.6	5.32e-05	0.0893	GCCCCCGGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	+	11.6	5.32e-05	0.0893	CGCCCGGGGCCG
TFAP2B	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	69	80	+	11.6	5.32e-05	0.0893	CGCCCCCAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	-	11.6	5.32e-05	0.0893	GCCCCCGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	-	11.6	5.32e-05	0.0893	GCCCCCGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	-	11.6	5.32e-05	0.0893	CGCCCGGGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	-	11.6	5.32e-05	0.0893	CGCCCGGGGCCG
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	35	46	-	11.6	5.32e-05	0.0893	CGCCCCCAGCCG
TFAP2B	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	-	11.6	5.32e-05	0.0893	CGCCCGGGGCCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	68	79	-	11.6	5.32e-05	0.0893	CGCCCCCAGCCG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	102	113	-	11.6	5.32e-05	0.0893	AGCCCCAAGCCG
SRF	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	1	16	+	5.95082	5.32e-05	0.943	TGGCCTGATATGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	3	12	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	3	12	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	3	12	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	6	15	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	6	15	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	7	16	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	8	17	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	8	17	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	14	23	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	6	15	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	9	18	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	21	30	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	21	30	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	13	22	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	13	22	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	13	22	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	13	22	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	23	32	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	25	34	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	25	34	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	25	34	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	16	25	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	16	25	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	26	35	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	18	27	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	32	41	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	23	32	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	23	32	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	23	32	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	23	32	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	25	34	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	25	34	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	35	44	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	35	44	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	35	44	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	35	44	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	27	36	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	27	36	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	27	36	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	28	37	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	39	48	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	39	48	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	39	48	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	39	48	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	41	50	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	41	50	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	37	46	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	55	64	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	47	56	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	49	58	-	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	50	59	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	51	60	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	51	60	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	51	60	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	51	60	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	56	65	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	71	80	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	71	80	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	71	80	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	71	80	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	88	97	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	97	106	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	97	106	+	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	100	109	+	11.3163	5.33e-05	0.0207	TGGGTGTGCC
Klf4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	91	100	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	99	108	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	100	109	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	103	112	-	11.3163	5.33e-05	0.0207	GGGGCGGGCC
HES7	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	6	17	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	19	30	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	19	30	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	19	30	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	19	30	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	33	44	-	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	69	80	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	71	82	+	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HES7	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	98	109	-	4.18966	5.33e-05	0.189	CGGCGCGTGCGT
HOXD11	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	21	30	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	21	30	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	21	30	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	39	48	-	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	67	76	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	67	76	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	67	76	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	67	76	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	67	76	+	11.831	5.33e-05	1	ATCATAAAAC
HOXD11	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	85	94	-	11.831	5.33e-05	1	ATCATAAAAC
Myog	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	35	45	-	12.2857	5.33e-05	0.145	CGCAGCTGCTT
Myog	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	53	63	-	12.2857	5.33e-05	0.145	CGCAGCTGCTT
Myog	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	63	73	-	12.2857	5.33e-05	0.145	CGCAGCTGCTT
FOXP1	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	64	78	-	11.493	5.33e-05	0.341	AAAGAGAAAACAATC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	18	27	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	18	27	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	21	30	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	21	30	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	37	46	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	38	47	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	38	47	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	38	47	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	49	58	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	67	76	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	67	76	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	67	76	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	67	76	+	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	57	66	-	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	69	78	-	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	69	78	-	11.4242	5.33e-05	0.297	CGGGACTTCC
REL	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	88	97	-	11.4242	5.33e-05	0.297	CGGGACTTCC
Klf12	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	42	56	+	8.95082	5.33e-05	0.0611	GGGCCCGCCCTCCCA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	76	90	-	9.92857	5.33e-05	0.122	GGAGCTGAGGGGTCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	35	44	-	11.5	5.33e-05	0.216	GGCAGCTGGT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	35	44	-	11.5	5.33e-05	0.216	GGCAGCTGGT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	57	66	-	11.5	5.33e-05	0.216	GGCAGCTGGT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	57	66	-	11.5	5.33e-05	0.216	GGCAGCTGGT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	86	95	-	11.5	5.33e-05	0.216	GGCAGCTGGT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	86	95	-	11.5	5.33e-05	0.216	GGCAGCTGGT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	68	85	-	-12.3684	5.33e-05	0.0472	CAAAATGAGGAAGGAGTG
IRF8	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	45	58	+	-1.27273	5.33e-05	0.732	TAGAAATTGAAAGA
IRF8	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	79	92	+	-1.27273	5.33e-05	0.732	TAGAAATTGAAAGA
EBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	25	38	+	9.7377	5.33e-05	0.365	AATCCCCTGGGCGC
EBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	25	38	+	9.7377	5.33e-05	0.365	AATCCCCTGGGCGC
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	25	38	+	9.7377	5.33e-05	0.365	AATCCCCTGGGCGC
IRF2	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	53	70	+	5.97248	5.33e-05	0.626	TAACAGCGAAAGGATAGA
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	15	27	-	11.0204	5.33e-05	0.303	CGAGTGATGTCAG
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	15	27	-	11.0204	5.33e-05	0.303	CGAGTGATGTCAG
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	14	27	-	9.41379	5.33e-05	0.0337	AGCCACGCCTTTTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	9	19	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	9	19	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	11	21	+	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	11	21	+	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	14	24	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	14	24	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	14	24	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	15	25	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	13	23	-	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	19	29	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	19	29	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	32	42	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	24	34	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	24	34	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	31	41	-	11.4423	5.33e-05	0.0143	GCACCGCCCCT
SP1	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	53	+	11.4423	5.33e-05	0.0143	GCACCGCCCCT
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	41	51	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	42	52	-	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	54	64	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	54	64	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	56	66	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	46	56	-	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	49	59	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	59	69	+	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	62	72	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	53	63	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	53	63	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	64	74	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	67	77	+	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	67	77	+	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	69	79	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	69	79	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	62	72	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	62	72	-	11.4423	5.33e-05	0.0143	GCTCCGCCCAG
SP1	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	62	72	-	11.4423	5.33e-05	0.0143	GCACCGCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	73	83	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	73	83	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	73	83	+	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	80	90	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	81	91	+	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	81	91	+	11.4423	5.33e-05	0.0143	CTTCCTCCCCT
SP1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	84	94	+	11.4423	5.33e-05	0.0143	ACTCCTCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	81	91	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
SP1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	96	106	-	11.4423	5.33e-05	0.0143	CCTCCTCCTCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	55	65	+	10.9828	5.33e-05	0.0196	GACGCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	55	65	+	10.9828	5.33e-05	0.0196	GACGCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	55	65	+	10.9828	5.33e-05	0.0196	GACGCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	55	65	+	10.9828	5.33e-05	0.0196	GACGCTCCCCC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	48	64	-	-15.2714	5.33e-05	0.94	TAAGTTCCAGGAACCCA
BCL6B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	48	64	-	-15.2714	5.33e-05	0.94	TAAGTTCCAGGAACCCA
BCL6B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	7	23	+	-15.2714	5.33e-05	0.94	TAAGTTCCAGGAACCCA
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	7	23	+	-15.2714	5.33e-05	0.94	TAAGTTCCAGGAACCCA
Rarg(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.1	44	60	-	-4.58182	5.34e-05	1	TAGGTCAACTCAGGGCA
Rarg(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.0	44	60	-	-4.58182	5.34e-05	1	TAGGTCAACTCAGGGCA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.0.0	44	60	-	-4.58182	5.34e-05	1	TAGGTCAACTCAGGGCA
ELF3	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	42	54	+	8.94828	5.34e-05	0.155	TATCCGGAAGAAG
EGR3	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	32	46	+	7.13793	5.34e-05	0.0383	CGCCGCCCCGGCCTA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	36	50	+	7.13793	5.34e-05	0.0383	CCCCCCCCGCGCGCA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	42	56	+	7.13793	5.34e-05	0.0383	GCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	42	56	+	7.13793	5.34e-05	0.0383	GCCCGCCCCCCCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	42	56	+	7.13793	5.34e-05	0.0383	GCCCGCCCCCCCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	42	56	+	7.13793	5.34e-05	0.0383	GCCCGCCCCCCCCGC
EGR3	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	57	71	+	7.13793	5.34e-05	0.0383	CGCCGCCCCGGCCTA
EGR3	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	44	58	-	7.13793	5.34e-05	0.0383	CGCCGCCCCGGCCTA
EGR3	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	69	83	-	7.13793	5.34e-05	0.0383	CGCCGCCCCGGCCTA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	17	37	+	10.102	5.34e-05	0.0174	GAGGGAAAGGGAGGCGGGTGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	25	45	+	10.102	5.34e-05	0.0174	GGTGGGGGGGGGCGGTGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	31	51	+	10.102	5.34e-05	0.0174	GGAAGCGGAGGTGGGGTAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	31	51	+	10.102	5.34e-05	0.0174	GGAAGCGGAGGTGGGGTAAAA
Myb	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	69	78	-	12.1311	5.34e-05	0.905	GAAACTGCCT
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	75	89	-	10.2879	5.34e-05	0.308	AATCATGAGTGAGCT
EHF	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	25	-	10.7869	5.34e-05	0.126	GATCCGGAAGCG
NFYA	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	11	28	-	9.7439	5.34e-05	0.157	ACAGATGTGTTTGGTCCA
NFYA	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	87	104	+	9.7439	5.34e-05	0.157	ACAGATGTGTTTGGTCCA
RREB1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	2	21	-	4.48624	5.34e-05	0.0582	CCCACCCCCGCCCGCCTCCC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	52	71	-	4.48624	5.34e-05	0.0582	ACACACAACACATGCCTTCC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.0.0	63	83	-	9.54839	5.34e-05	0.176	TTTTGCTTTCTCTGTCACCAA
FEV	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	11.8462	5.34e-05	0.133	TCCGGAAGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	23	35	+	10.6885	5.34e-05	0.0641	CGCCCGGTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	23	35	+	10.6885	5.34e-05	0.0641	CGCCCGGTGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	48	60	+	10.6885	5.34e-05	0.0641	TCCCTCCCAGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	91	103	+	10.6885	5.34e-05	0.0641	GGCCTTGGAGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	98	110	-	10.6885	5.34e-05	0.0641	TCCCTCCCAGGCT
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	6	20	+	11.4655	5.34e-05	0.692	CAGTTTCTCAGAAGC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	6	20	+	11.4655	5.34e-05	0.692	CAGTTTCTCAGAAGC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	6	20	+	11.4655	5.34e-05	0.692	CAGTTTCTCAGAAGC
Stat6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	6	20	+	11.4655	5.34e-05	0.692	CAGTTTCTCAGAAGC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	6	20	+	11.4655	5.34e-05	0.692	CAGTTTCTCAGAAGC
ERF	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	38	47	+	11.5	5.34e-05	0.0993	ACAGGAAATA
ERF	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	68	77	-	11.5	5.34e-05	0.0993	ACAGGAAATA
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	47	-	4.17241	5.34e-05	0.189	CGTCACGTGACA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	47	-	4.17241	5.34e-05	0.189	CGTCACGTGACA
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	87	+	4.17241	5.34e-05	0.189	CGTCACGTGACA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	87	+	4.17241	5.34e-05	0.189	CGTCACGTGACA
SPDEF	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	67	77	+	10.8545	5.34e-05	0.255	GCCCGGAAGTA
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	45	59	+	10.7241	5.34e-05	0.442	CGGACCAAGGCCGGC
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	2	15	+	4.62121	5.34e-05	0.379	GAGCCCCCGGGGCG
RFX4	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	-	10.4091	5.34e-05	0.282	CGCGACCATGGTAACC
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	+	10.4091	5.34e-05	0.282	GGTCACCGTGACAATG
PKNOX2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	32	43	+	3.95082	5.34e-05	0.598	TGACATGTCCCA
PKNOX2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	72	83	-	3.95082	5.34e-05	0.598	TGACATGTCCCA
EGR2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	13	23	+	10.0172	5.34e-05	0.0818	TCGCCCCCGCC
EGR2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	21	31	-	10.0172	5.34e-05	0.0818	TCGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	44	54	-	10.0172	5.34e-05	0.0818	ACACCCACTCG
EGR2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	84	94	+	10.0172	5.34e-05	0.0818	TCGCCCCCGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	92	102	-	10.0172	5.34e-05	0.0818	TCGCCCCCGCC
TCF4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	70	79	-	12.5714	5.34e-05	0.422	GGCACCTGGG
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	84	93	-	12.5714	5.34e-05	0.422	GGCACCTGGG
TCF4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	36	45	+	12.5714	5.34e-05	0.422	GGCACCTGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	-	10.8525	5.34e-05	0.0586	AGCCCGGGAGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	-	10.8525	5.34e-05	0.0586	AGCCCGGGAGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	51	+	10.8525	5.34e-05	0.0586	GGCCGCCAGGGGT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	51	+	10.8525	5.34e-05	0.0586	GGCCGCCAGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	51	+	10.8525	5.34e-05	0.0586	GGCCGCCAGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	51	+	10.8525	5.34e-05	0.0586	GGCCGCCAGGGGT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	96	108	-	10.8525	5.34e-05	0.0586	AGCCCCCAAGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	96	108	-	10.8525	5.34e-05	0.0586	AGCCCCCAAGGGC
FIGLA	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	9	18	-	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	80	89	+	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	97	106	+	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	97	106	+	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	97	106	+	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	97	106	+	11.8103	5.34e-05	0.859	CACACCTGGA
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	100	-	11.8103	5.34e-05	0.859	ACCACCTGCC
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	100	-	11.8103	5.34e-05	0.859	ACCACCTGCC
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	100	-	11.8103	5.34e-05	0.859	ACCACCTGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	-	10.5517	5.35e-05	0.0554	CCCCTGAAGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	+	10.5517	5.35e-05	0.0554	TCCCCGAGAGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	+	10.5517	5.35e-05	0.0554	CCCCTGAAGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	+	10.5517	5.35e-05	0.0554	CCCCTGAAGGGCA
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	-	10.5517	5.35e-05	0.0554	CCCCTGAAGGGCA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	-	10.5517	5.35e-05	0.0554	TCCCCGAGAGGGA
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	+	10.5517	5.35e-05	0.0554	CCCCTGAAGGGCA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	17	34	-	-12.3816	5.35e-05	0.0473	GGGAAAAAAAAAGGAAAG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	20	30	+	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	20	30	+	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	20	30	+	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	20	30	+	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	38	48	-	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	38	48	-	11.3934	5.35e-05	0.0592	CCGGAAGGCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	61	71	+	11.3934	5.35e-05	0.0592	CCGGAAGGCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	61	71	+	11.3934	5.35e-05	0.0592	CCGGAAGGCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	61	71	+	11.3934	5.35e-05	0.0592	CCGGAAGGCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	61	71	+	11.3934	5.35e-05	0.0592	CCGGAAGGCGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	61	71	+	11.3934	5.35e-05	0.0592	CCGGAAGGCGG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	5	19	+	8.74286	5.35e-05	0.106	CGCCTCCCGCAACGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	7	21	+	8.74286	5.35e-05	0.106	CGCCTCCCGCAACGC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	94	108	-	8.74286	5.35e-05	0.106	CGCCTCCCGCAACGC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	96	110	-	8.74286	5.35e-05	0.106	CGCCTCCCGCAACGC
Atf3	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	17	24	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	25	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	43	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	48	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	48	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	48	55	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	79	86	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	79	86	+	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	21	28	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	21	28	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	33	40	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	33	40	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	33	40	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	33	40	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	33	40	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	39	46	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	67	74	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	67	74	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	72	79	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	90	97	-	11.918	5.35e-05	0.421	CATGACGT
Atf3	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	91	98	-	11.918	5.35e-05	0.421	CATGACGT
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	22	35	-	11.7115	5.35e-05	0.223	TGCCTGTGACTCAT
BCL6B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	44	60	-	-15.2857	5.35e-05	0.94	CGCTCTCCTGGAATACC
BCL6B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	44	60	-	-15.2857	5.35e-05	0.94	CGCTCTCCTGGAATACC
BCL6B	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	55	71	+	-15.2857	5.35e-05	0.94	CGCTCTCCTGGAATACC
NEUROG2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	32	41	+	10.3333	5.35e-05	1	GACATGTGTC
NEUROG2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	32	41	-	10.3333	5.35e-05	1	GACACATGTC
NEUROG2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	74	83	+	10.3333	5.35e-05	1	GACACATGTC
NEUROG2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	74	83	-	10.3333	5.35e-05	1	GACATGTGTC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	59	69	-	10.6364	5.35e-05	0.0187	ACGCTCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	59	69	-	10.6364	5.35e-05	0.0187	ACGCTCGCGCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	100	110	+	11.3788	5.35e-05	0.0469	CATCACACCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	5	15	-	11.3788	5.35e-05	0.0469	CATCACACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	5	15	-	11.3788	5.35e-05	0.0469	CATCACACCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	2	16	+	10.9138	5.35e-05	0.0127	CACCCTCCCTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	2	16	+	10.9138	5.35e-05	0.0127	CACCCTCCCTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	6	20	-	10.9138	5.35e-05	0.0127	CCACCTCCTCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	13	27	-	10.9138	5.35e-05	0.0127	CCCCTTCCCCCTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	13	27	-	10.9138	5.35e-05	0.0127	CCCCTTCCCCCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	13	27	-	10.9138	5.35e-05	0.0127	CCCCTTCCCCCTTCC
SP2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	44	58	-	10.9138	5.35e-05	0.0127	CACCCACCCCCCACC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	58	74	+	4.67273	5.35e-05	0.0271	CTGGCCCCGCCCTGGGA
HOXB13	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	26	35	-	11.5636	5.35e-05	1	CCAATTAAAT
HOXB13	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	89	+	11.5636	5.35e-05	1	CCAATTAAAT
HOXB13	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	89	+	11.5636	5.35e-05	1	CCAATTAAAT
E2F4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	83	93	+	11.5	5.35e-05	0.0475	GCGCGCGAGGT
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	2	15	-	11.2258	5.35e-05	0.411	CTTCCTCAAATGCC
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	33	46	+	11.2258	5.35e-05	0.411	CTTCCTCAAATGCC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	60	73	+	11.2258	5.35e-05	0.411	CTTACTGGAAGGAA
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	60	73	+	11.2258	5.35e-05	0.411	CTTACTGGAAGGAA
Rfx1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	6	19	+	10.5862	5.35e-05	0.256	GGCCGCATGGCAGC
Rfx1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	96	109	-	10.5862	5.35e-05	0.256	GGCCGCATGGCAGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	1	11	-	11.7455	5.35e-05	0.0599	GCACTTCCTGA
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	80	90	+	11.7455	5.35e-05	0.0599	GCACTTCCTGA
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	52	62	-	11.6346	5.35e-05	0.0744	CGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	86	96	-	11.6346	5.35e-05	0.0744	AGCCGCCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	86	96	-	11.6346	5.35e-05	0.0744	AGCCGCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	86	96	-	11.6346	5.35e-05	0.0744	AGCCGCCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	86	96	-	11.6346	5.35e-05	0.0744	AGCCGCCGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	98	108	-	11.6346	5.35e-05	0.0744	CGCCGGCGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	19	29	+	11.6346	5.35e-05	0.0744	AGCCGCCGGCG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	21	40	-	4.47706	5.35e-05	0.0582	CCCCCCCCCGCCCCGCGTCA
RREB1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	75	94	+	4.47706	5.35e-05	0.0582	CCCCCCCCCGCCCCGCGTCA
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	11	22	+	10.5612	5.35e-05	0.177	GGGTTGGGGGTG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	38	49	-	10.5612	5.35e-05	0.177	GGGTTGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	38	49	-	10.5612	5.35e-05	0.177	GGGTTGGGGGTG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	23	36	-	11.2535	5.36e-05	0.254	GAAATCAGTAAGAA
XBP1	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	69	82	-	10.3269	5.36e-05	0.508	GGCACCACGTCACG
RXRG	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	59	72	+	2.65957	5.36e-05	0.48	GAGGGTAAAGGTCT
RXRG	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	56	-	2.65957	5.36e-05	0.48	GAGGGTAAAGGTCT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	13	23	+	11.0656	5.36e-05	0.161	AAGAGGAAATA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	19	-	11.0656	5.36e-05	0.161	ACCCGGAAATG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	19	-	11.0656	5.36e-05	0.161	ACCCGGAAATG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	88	98	-	11.0656	5.36e-05	0.161	AAGAGGAAATA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	62	75	+	10.7692	5.36e-05	0.022	TCCACGCCCCTGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	62	75	+	10.7692	5.36e-05	0.022	TCCACGCCCCTGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	69	82	+	10.7692	5.36e-05	0.022	GCGCCGCCGCCGTT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	69	82	+	10.7692	5.36e-05	0.022	GCGCCGCCGCCGTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	69	82	+	10.7692	5.36e-05	0.022	GCGCCGCCGCCGTT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	69	82	+	10.7692	5.36e-05	0.022	GCGCCGCCGCCGTT
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	76	89	+	10.7692	5.36e-05	0.022	CTCCAGCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	101	114	+	10.7692	5.36e-05	0.022	CCGCTACCGCCGCC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	25	38	-	6.33673	5.36e-05	0.0723	GGGGCGGGAGGGGA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	5	15	+	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	5	15	+	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	40	50	+	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	33	43	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	53	63	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	53	63	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	72	82	+	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	65	75	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	100	110	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	100	110	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	100	110	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	100	110	-	11.4231	5.36e-05	0.0143	CGCCCGCCCCA
Klf1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	52	62	+	11.3636	5.36e-05	0.0469	CGGCCCACCCT
Klf1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	54	64	-	11.3636	5.36e-05	0.0469	CGGCCCACCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	63	73	-	11.3636	5.36e-05	0.0469	CGGCCCACCCT
Zfx	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	21	34	-	11.3182	5.36e-05	0.0573	GGGGCGGCGGCCTC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	14	28	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	14	28	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	34	48	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	34	48	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	35	49	-	10.8	5.36e-05	0.109	GCGCCCCCGCGGTCA
ZIC4	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	66	80	+	10.8	5.36e-05	0.109	GCGCCCCCGCGGTCA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	62	76	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	62	76	-	10.8	5.36e-05	0.109	GACCGCCTGTGACGC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	+	11.7091	5.36e-05	0.0544	TGCCCCAGGGT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	+	11.7091	5.36e-05	0.0544	TGCCCCAGGGT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	-	11.7091	5.36e-05	0.0544	TGCCCCAGGGT
GLIS1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	49	64	-	-8.05769	5.36e-05	0.329	CTTCCGCCCACGTCAT
NFYB	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	17	31	+	11.1731	5.36e-05	0.162	AAGCCGGCCAATAAA
SCRT2	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	58	70	+	7.55738	5.36e-05	0.89	CAGCCACAGGTCT
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	39	47	+	11.5577	5.36e-05	0.516	ATGCCAGCG
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	39	47	+	11.5577	5.36e-05	0.516	ATGCCAGCG
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	7	15	-	11.5577	5.36e-05	0.516	ATGCCAGCG
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	7	15	-	11.5577	5.36e-05	0.516	ATGCCAGCG
Hic1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	68	76	-	11.5577	5.36e-05	0.516	ATGCCAGCG
ATF7	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	22	35	-	8.14286	5.36e-05	0.171	CGGAGACGTCATCA
ATF7	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	80	93	+	8.14286	5.36e-05	0.171	CGGAGACGTCATCA
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	35	46	-	11.5	5.36e-05	1	GAAATGCAAATT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	5	19	-	8.93443	5.36e-05	0.0611	AAGCACGCCCCCTCT
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	28	42	-	8.93443	5.36e-05	0.0611	AGCCCCGCCCCCGCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	39	53	-	8.93443	5.36e-05	0.0611	AGCCCCGCCCCCGCC
Klf12	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	73	87	+	8.93443	5.36e-05	0.0611	AGCCCCGCCCCCGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	71	85	-	8.93443	5.36e-05	0.0611	AGCCCCGCCCCCGCC
Ar	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	2	18	+	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
Ar	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	2	18	+	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
Ar	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	5	21	-	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
Ar	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	5	21	-	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
Ar	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	94	110	+	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
Ar	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	97	113	-	7.34483	5.37e-05	0.882	GGGCCCAGGCTGTCCCC
ETV6	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	8	17	+	11.7308	5.37e-05	0.102	TGAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	31	40	-	11.7308	5.37e-05	0.102	TGAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	64	73	-	11.7308	5.37e-05	0.102	TGAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	64	73	-	11.7308	5.37e-05	0.102	TGAGGAAGTG
HOXC11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	29	39	-	11.8103	5.37e-05	1	TGTCGTAAAGC
HOXC11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	76	86	+	11.8103	5.37e-05	1	TGTCGTAAAGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	23	33	-	11.766	5.37e-05	0.232	AATGATTCATT
FOS	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	104	114	+	11.766	5.37e-05	0.232	AATGATTCATT
ELK3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.569	5.37e-05	0.112	GGCGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.569	5.37e-05	0.112	GGCGGAAGTG
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	59	68	-	10.0727	5.37e-05	0.241	ATGACGTGAC
ERG	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	11.8545	5.37e-05	0.118	AGCGGAAATG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	25	34	-	11.8545	5.37e-05	0.118	TCCGGAAACG
ERG	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	11.8545	5.37e-05	0.118	AGCGGAAATG
ERG	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	62	71	-	11.8545	5.37e-05	0.118	TCCGGAAACG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	+	11.2909	5.37e-05	0.204	CGTGACTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	+	11.2909	5.37e-05	0.204	CGTGACTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	-	11.2909	5.37e-05	0.204	CGTGACTCACG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	-	11.2909	5.37e-05	0.204	CGTGACTCACG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	12	23	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	23	-	9.67273	5.37e-05	0.114	CAGCAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	12	23	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	34	45	+	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	70	81	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	70	81	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	70	81	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	70	81	-	9.67273	5.37e-05	0.114	AGACCGGAAGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	6	16	+	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	6	16	+	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	6	16	+	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	6	16	+	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	74	84	+	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	31	41	-	11.5455	5.37e-05	0.0702	AGCCCCGGGCC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	26	37	+	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	26	37	+	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ELF4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	31	42	+	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	40	51	+	9.70492	5.37e-05	0.1	ACAGCGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	75	-	9.70492	5.37e-05	0.1	ACAGCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	75	-	9.70492	5.37e-05	0.1	ACAGCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	84	-	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	84	-	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ELF4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	89	-	9.70492	5.37e-05	0.1	ATTGCGGAAGTT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	80	94	-	10.7727	5.37e-05	0.108	GGCCCGCGATCCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	23	36	-	9.39655	5.37e-05	0.0337	GACTCCGCCCTCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	23	36	-	9.39655	5.37e-05	0.0337	GACTCCGCCCTCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	54	67	+	9.39655	5.37e-05	0.0337	CGCCCCCCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	61	74	+	9.39655	5.37e-05	0.0337	CTCCACGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	61	74	+	9.39655	5.37e-05	0.0337	CTCCACGCCCCTGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	22	+	11.25	5.37e-05	0.0303	ACCCCTCCCATC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	1	12	-	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	1	12	-	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	24	35	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	24	35	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	24	35	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	24	35	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	24	35	+	11.25	5.37e-05	0.0303	GCCCCGCCCGTT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	24	35	+	11.25	5.37e-05	0.0303	GCCCCGCCCGTT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	26	37	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	26	37	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	30	41	+	11.25	5.37e-05	0.0303	TCCCCTCCCACC
SP8	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	78	89	-	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
SP8	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	80	91	-	11.25	5.37e-05	0.0303	GCCCCGCCCGTT
SP8	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	103	114	+	11.25	5.37e-05	0.0303	GCCCCTCCCGCT
PRDM1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	84	98	+	10.8364	5.37e-05	0.312	GGGAGGTGAGAGTTC
PRDM1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	84	98	+	10.8364	5.37e-05	0.312	GGGAGGTGAGAGTTC
PRDM1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	84	98	+	10.8364	5.37e-05	0.312	GGGAGGTGAGAGTTC
PRDM1	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	18	32	-	10.8364	5.37e-05	0.312	GGGAGGTGAGAGTTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	9	24	+	10.6909	5.37e-05	0.039	CCCCGCCCCTGCCCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	9	24	+	10.6909	5.37e-05	0.039	CCCCGCCCCTGCCCCA
EGR4	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	52	67	+	10.6909	5.37e-05	0.039	GCCCGCGCCCGCCCTA
EGR4	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	48	63	-	10.6909	5.37e-05	0.039	GCCCGCGCCCGCCCTA
Arntl	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	46	55	-	11.6393	5.37e-05	0.24	ACTCACGTGG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	107	-	12.6538	5.37e-05	0.404	CCCACCTGCT
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	107	-	12.6538	5.37e-05	0.404	CCCACCTGCT
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	4	18	+	11.1915	5.37e-05	0.32	ATTGATGAGATCAGG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	22	36	-	11.1915	5.37e-05	0.32	AAGAATGATACAATA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	22	36	-	11.1915	5.37e-05	0.32	AAGAATGATACAATA
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	68	82	-	11.1915	5.37e-05	0.32	ATTGATGAGATCAGG
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	97	111	-	11.1915	5.37e-05	0.32	ATTGATGAGATCAGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	36	+	10.6721	5.37e-05	0.0641	GGCCTGGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	36	+	10.6721	5.37e-05	0.0641	GGCCTGGGGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	54	-	10.6721	5.37e-05	0.0641	GGCCTGGGGGGCG
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	11.7069	5.37e-05	0.126	AGCGGAAGCA
ETV4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	11.7069	5.37e-05	0.126	AGCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.7069	5.37e-05	0.126	AGCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.7069	5.37e-05	0.126	AGCGGAAGTC
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.1	24	32	-	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.2.0	24	32	-	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	24	32	-	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	24	32	-	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	24	32	-	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	80	88	+	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.2.0	80	88	+	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	80	88	+	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	80	88	+	12.0727	5.37e-05	1	GCCACTTAT
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.1	80	88	+	12.0727	5.37e-05	1	GCCACTTAT
E2F6	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	94	104	+	11.7586	5.37e-05	0.0628	GAGCGGGAATC
Foxj3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	3	19	-	11.6104	5.37e-05	1	CTAGTGTAAACAAGTCA
Foxj3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	3	19	-	11.6104	5.37e-05	1	CTAGTGTAAACAAGTCA
Foxj3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	60	76	+	11.6104	5.37e-05	1	CTAGTGTAAACAAGTCA
Foxj3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	60	76	+	11.6104	5.37e-05	1	CTAGTGTAAACAAGTCA
Foxj3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	64	80	+	11.6104	5.37e-05	1	GCAAGGTATACAATGCC
Foxj3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	64	80	+	11.6104	5.37e-05	1	GCAAGGTATACAATGCC
Foxj3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	64	80	+	11.6104	5.37e-05	1	GCAAGGTATACAATGCC
Foxj3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	64	80	+	11.6104	5.37e-05	1	GCAAGGTATACAATGCC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	24	44	+	9.53226	5.37e-05	0.176	TTTTTTTTTTTTTTTCCTTTC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	24	44	+	9.53226	5.37e-05	0.176	TTTTTTTTTTTTTTTCCTTTC
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	24	44	+	9.53226	5.37e-05	0.176	TTTTTTTTTTTTTTTCCTTTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	24	44	+	9.53226	5.37e-05	0.176	TTTTTTTTTTTTTTTCCTTTC
IRF1	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	45	65	-	9.53226	5.37e-05	0.176	CTTCACTCCCGTTTTCAGTCC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	67	81	-	-1.58182	5.37e-05	0.564	GCAGAAAAAGAAACT
E2F4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	57	67	-	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	73	83	-	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	77	87	-	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	32	42	+	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	45	55	+	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	45	55	+	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	45	55	+	11.4828	5.38e-05	0.0475	GGGCGGGGACA
E2F4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	48	58	+	11.4828	5.38e-05	0.0475	GGGCGGGGACA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	10	21	-	11.6182	5.38e-05	0.055	AGCCTCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	10	21	-	11.6182	5.38e-05	0.055	AGCCTCGGGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	21	32	+	11.6182	5.38e-05	0.055	CCCCTCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	82	93	+	11.6182	5.38e-05	0.055	AGCCTCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	82	93	+	11.6182	5.38e-05	0.055	AGCCTCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	94	-	11.6182	5.38e-05	0.055	CCCCTCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	94	-	11.6182	5.38e-05	0.055	CCCCTCGGGGCC
RFX2	WILDTYPE__Antisense.flip.sense__chr2:122407144..122407258,+__394.1.0.0	46	61	+	6.67143	5.38e-05	0.313	CCTCTCTATGGTAACG
RFX2	FLIPPED__Antisense.flip.antisense__chr2:122407144..122407258,-__2663.1.0.0	54	69	-	6.67143	5.38e-05	0.313	CCTCTCTATGGTAACG
Myod1	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	9	21	-	12.2449	5.38e-05	0.167	CACACCTGTCCGT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	70	82	-	12.2449	5.38e-05	0.167	TGCAGCTGTGCAC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	70	82	-	12.2449	5.38e-05	0.167	TGCAGCTGTGCAC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	70	82	-	12.2449	5.38e-05	0.167	TGCAGCTGTGCAC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	86	98	-	12.2449	5.38e-05	0.167	CCCAGCTGCTGAC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	86	98	-	12.2449	5.38e-05	0.167	CCCAGCTGCTGAC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	12	26	-	8.72857	5.38e-05	0.106	CGCCCCGCGCTGCGC
SP4	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	50	66	-	4.65455	5.38e-05	0.0272	CACACCCCGCACACACC
CTCF	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	68	86	+	9.22951	5.38e-05	0.118	TTCCCAGCAGTCGGCAGTA
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	58	76	-	9.22951	5.38e-05	0.118	CTCCCAGGCGAGGGCGGAA
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	58	76	-	9.22951	5.38e-05	0.118	CTCCCAGGCGAGGGCGGAA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	58	76	-	9.22951	5.38e-05	0.118	CTCCCAGGCGAGGGCGGAA
CTCF	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	82	100	-	9.22951	5.38e-05	0.118	CTCCCAGGCGAGGGCGGAA
EN2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	36	45	-	10.8983	5.38e-05	1	CCCAATCACC
EN2	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	22	31	+	10.8983	5.38e-05	1	CCCAATCACC
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	73	89	-	1.50909	5.38e-05	0.501	GGCCACGCCTGGCCTGG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	73	89	-	1.50909	5.38e-05	0.501	GGCCACGCCTGGCCTGG
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	73	89	-	1.50909	5.38e-05	0.501	GGCCACGCCTGGCCTGG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	73	89	-	1.50909	5.38e-05	0.501	GGCCACGCCTGGCCTGG
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	29	43	-	10.2727	5.38e-05	0.308	CTGCGTGACTCAGGC
Nfe2l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	71	85	-	10.2727	5.38e-05	0.308	CTCGGTGAGTCGGCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	71	85	-	10.2727	5.38e-05	0.308	CTCGGTGAGTCGGCG
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	97	111	+	10.2727	5.38e-05	0.308	CTGCGTGACTCAGGC
Znf423	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	14	28	+	6.59551	5.38e-05	0.277	CGCCCCCTGGCGGGA
Znf423	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	14	28	+	6.59551	5.38e-05	0.277	CGCCCCCTGGCGGGA
OLIG1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	+	10.7115	5.38e-05	1	TACATATGGT
SPI1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	29	-	3.76364	5.38e-05	0.192	CCAAACCGGAAGCT
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	28	41	-	3.76364	5.38e-05	0.192	CAGAAGCGGAAGAG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	70	80	+	11.6207	5.38e-05	0.263	TTTTGTGGTCA
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	70	80	+	11.6207	5.38e-05	0.263	TTTTGTGGTCA
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	70	80	+	11.6207	5.38e-05	0.263	TTTTGTGGTCA
EHF	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	46	57	-	10.7705	5.38e-05	0.126	AACGGGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	69	-	10.7705	5.38e-05	0.126	CGCCCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	69	-	10.7705	5.38e-05	0.126	CGCCCGGAAGCA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	69	-	10.7705	5.38e-05	0.126	CGCCCGGAAGCA
NHLH1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	12	21	-	11.3103	5.38e-05	0.128	CACAGGTGCG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	103	+	11.3103	5.38e-05	0.128	CACAGGTGCG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	103	+	11.3103	5.38e-05	0.128	CACAGGTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	103	+	11.3103	5.38e-05	0.128	CACAGGTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	103	+	11.3103	5.38e-05	0.128	CACAGGTGCG
TFEB	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	11.7885	5.38e-05	0.151	ACCACGTGTC
TFEB	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	11.7885	5.38e-05	0.151	ACCACGTGTC
PBX1	WILDTYPE__Enhancer.noflip.NA__chr1:158146798..158146912,-__2027.1.0.0	51	62	+	11.2449	5.38e-05	1	GTGTCAATCAAA
TEAD1	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	55	64	-	11.5	5.38e-05	0.973	GGCATTCCAC
TEAD1	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	95	104	-	11.5	5.38e-05	0.973	GGCATTCCAC
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	3	12	+	11.5	5.38e-05	0.973	AGCATTCCTC
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	3	12	+	11.5	5.38e-05	0.973	AGCATTCCTC
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	3	12	+	11.5	5.38e-05	0.973	AGCATTCCTC
TEAD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	3	12	+	11.5	5.38e-05	0.973	AGCATTCCTC
TEAD1	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	11	20	+	11.5	5.38e-05	0.973	GGCATTCCAC
TEAD1	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	51	60	+	11.5	5.38e-05	0.973	GGCATTCCAC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	-	10.8361	5.38e-05	0.0586	TGCCTGGGAGGCT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	+	10.8361	5.38e-05	0.0586	TGCCTGGGAGGCT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	+	10.8361	5.38e-05	0.0586	TGCCTGGGAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	-	10.8361	5.38e-05	0.0586	ACCCCGGGCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	-	10.8361	5.38e-05	0.0586	ACCCCGGGCGGCA
Alx1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	90	106	+	11.4935	5.38e-05	1	GGGTCTAATTAGTTGAG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	10	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	10	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	11	+	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	5	12	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	5	12	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	5	12	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	22	+	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	9	16	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	9	16	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	10	17	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	10	17	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	16	23	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	16	23	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	16	23	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	16	23	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	31	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	33	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	33	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	36	+	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	36	+	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	23	30	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	23	30	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	24	31	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	39	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	39	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	39	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	42	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	32	39	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	33	40	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	33	40	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	33	40	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	33	40	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	33	40	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	36	43	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	36	43	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	42	49	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	42	49	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	46	53	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	46	53	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	67	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	56	63	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	56	63	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	75	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	75	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	63	70	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	63	70	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	69	76	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	69	76	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	83	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	71	78	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	73	80	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	73	80	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	73	80	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	73	80	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	75	82	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	75	82	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	81	88	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	81	88	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	84	91	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	100	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	100	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	89	96	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	89	96	-	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	103	+	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	92	99	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	106	+	12.7377	5.38e-05	0.225	GGCACGTG
Mycn	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	93	100	-	12.7377	5.38e-05	0.225	TCCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	110	+	12.7377	5.38e-05	0.225	GGCACGTG
Stat6	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	9	23	+	11.4483	5.38e-05	0.692	ATCTTCCTTGGAAGT
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr15:60547657..60547771,-__2056.1.0.0	3	12	+	11.2097	5.38e-05	1	CATTTCCATG
NRF1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	88	98	+	10.6182	5.38e-05	0.0188	CCGCTGGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	17	27	-	10.6182	5.38e-05	0.0188	CCGCTGGCGCA
GATA2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	44	57	+	12	5.38e-05	1	TCCTCCTTATCTGG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	20	34	+	11.1892	5.38e-05	0.182	GAAGAGGAGGGGGCA
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	66	79	-	8.78689	5.38e-05	0.185	GCCCCCCCGCCCCC
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	66	79	-	8.78689	5.38e-05	0.185	GCCCCCCCGCCCCC
KLF13	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	88	105	+	5.43103	5.38e-05	0.278	GTGCCAGGCACCCTGTTA
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	13	30	-	5.43103	5.38e-05	0.278	GTGCCGCGCCCCCAACCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	13	30	-	5.43103	5.38e-05	0.278	GTGCCGCGCCCCCAACCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	19	38	-	4.45872	5.38e-05	0.0584	CCCCACCTCCCTCCCACCCT
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	19	38	-	4.45872	5.38e-05	0.0584	CCCCACCTCCCTCCCACCCT
ATF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	85	97	+	10.2951	5.39e-05	0.575	GTGTGATGAAATG
ATF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	85	97	+	10.2951	5.39e-05	0.575	GTGTGATGAAATG
Foxo1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	86	96	+	11.931	5.39e-05	0.902	AGCTGTTTTCC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	4	13	-	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	72	81	+	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	72	81	+	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	72	81	+	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	72	81	+	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	72	81	+	11.3061	5.39e-05	0.0208	TGGGTGGTGC
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	12	21	+	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	12	21	+	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	12	21	+	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	12	21	+	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	19	28	-	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	87	96	+	11.1122	5.39e-05	0.243	CGTCACGCGA
Mitf	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	94	103	-	11.1122	5.39e-05	0.243	CGTCACGCGA
SP3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	61	71	+	11.3984	5.39e-05	0.0206	CCCACACCCGC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	77	87	+	11.3984	5.39e-05	0.0206	CCCACACCCGC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	28	38	-	11.3984	5.39e-05	0.0206	CCCACACCCGC
SP3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	44	54	-	11.3984	5.39e-05	0.0206	CCCACACCCGC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	17	27	+	11.5273	5.39e-05	0.0702	ACCCCCAGGCC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	11.7931	5.39e-05	0.107	ACCGGATGCT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	11.7931	5.39e-05	0.107	ACCGGATGCT
ETS1	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	11.7931	5.39e-05	0.107	GCCGGAAACA
ETS1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	11.7931	5.39e-05	0.107	GCCGGAAACA
ETS1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	11.7931	5.39e-05	0.107	ACCGGAAAGG
ETS1	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	11.7931	5.39e-05	0.107	GCCGGAAACA
ETS1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	11.7931	5.39e-05	0.107	GCCGGAAACA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	37	46	-	10.1049	5.39e-05	0.0973	GGCACGAGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	37	46	-	10.1049	5.39e-05	0.0973	GGCACGAGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	79	88	-	10.1049	5.39e-05	0.0973	GGCACGAGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	79	88	-	10.1049	5.39e-05	0.0973	GGCACGAGCC
TFAP2B	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	13	24	+	11.5818	5.39e-05	0.0893	CGCCGCGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	61	72	+	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	84	95	+	11.5818	5.39e-05	0.0893	CGCCGCGGGGCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	20	31	-	11.5818	5.39e-05	0.0893	CGCCGCGGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	54	-	11.5818	5.39e-05	0.0893	AGGCCGCGGGCA
TFAP2B	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	91	102	-	11.5818	5.39e-05	0.0893	CGCCGCGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	4	24	-	10.0816	5.39e-05	0.0175	GGAGGAGGAGTCAAGGAAACT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	4	24	-	10.0816	5.39e-05	0.0175	GGAGGAGGAGTCAAGGAAACT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	4	24	-	10.0816	5.39e-05	0.0175	GGAGGAGGAGTCAAGGAAACT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	33	53	-	10.0816	5.39e-05	0.0175	TATGGAGGCGCAGAAGGGGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	45	65	-	10.0816	5.39e-05	0.0175	GGGGGCGGAGGGAAGTAGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	50	70	-	10.0816	5.39e-05	0.0175	GGGTGAGGGACGGCGAATGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	50	70	-	10.0816	5.39e-05	0.0175	GGGTGAGGGACGGCGAATGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	85	105	-	10.0816	5.39e-05	0.0175	TGAAGATGAGCGGGGGTGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	87	107	-	10.0816	5.39e-05	0.0175	AGAGACAGAGAAGGGAGAGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	8	28	+	10.0816	5.39e-05	0.0175	GGGGGCAGAGGGAAGTGAGAT
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	10	30	+	10.0816	5.39e-05	0.0175	TGAAGATGAGCGGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	14	34	+	10.0816	5.39e-05	0.0175	GGGAGGCGGAGGGGAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	14	34	+	10.0816	5.39e-05	0.0175	GGGAGGCGGAGGGGAGGAGGG
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	16	30	-	7.10345	5.39e-05	0.0385	CGCCGCCGCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	29	43	-	7.10345	5.39e-05	0.0385	CCACGCTCCCTCACC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	29	43	-	7.10345	5.39e-05	0.0385	CCACGCTCCCTCACC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.0.0	56	70	-	7.10345	5.39e-05	0.0385	GGACGCCTGCGCAGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44621849..44621963,-__1108.1.1.0	56	70	-	7.10345	5.39e-05	0.0385	GGACGCCTGCGCAGT
ID4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	66	75	+	12.6393	5.39e-05	0.389	CACACCTGCG
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	45	58	-	7.11842	5.39e-05	0.56	GAGCCAGCTGGCAG
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	45	58	-	7.11842	5.39e-05	0.56	GAGCCAGCTGGCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	10	24	+	10.8966	5.39e-05	0.0127	TTCCCGCCCTGTAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	10	24	+	10.8966	5.39e-05	0.0127	TTCCCGCCCTGTAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	10	24	+	10.8966	5.39e-05	0.0127	TTCCCGCCCTGTAGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	18	32	+	10.8966	5.39e-05	0.0127	TTCCCTCCCTCTCTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	32	46	+	10.8966	5.39e-05	0.0127	GACCCGCCCCGTAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	32	46	+	10.8966	5.39e-05	0.0127	GACCCGCCCCGTAGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	88	102	+	10.8966	5.39e-05	0.0127	CCCCCGCTCCCCAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	11	25	-	10.8966	5.39e-05	0.0127	TGTCCACCCCCACCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	11	25	-	10.8966	5.39e-05	0.0127	TGTCCACCCCCACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	11	25	-	10.8966	5.39e-05	0.0127	TGTCCACCCCCACCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	12	26	-	10.8966	5.39e-05	0.0127	CCCCCGCTCCCCAGG
RAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	11.2542	5.39e-05	1	TCCAATTAAC
RAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	11.2542	5.39e-05	1	TCCAATTAAC
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	23	39	+	10.9342	5.39e-05	0.638	CTTGTGACGTAAGCCGC
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	53	69	+	10.9342	5.39e-05	0.638	CTTGTGACGTAAGCCGC
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	58	71	-	9.70492	5.39e-05	0.365	ATTCGCCTGGGAAA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	16	29	+	11.303	5.39e-05	0.0574	GAGCTCGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	16	29	+	11.303	5.39e-05	0.0574	GAGCTCGGGGCCTG
HES5	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	17	-	3.56897	5.39e-05	0.298	GGCCACGTGCTC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	9	22	+	11.6923	5.4e-05	0.223	AAAGAGTGAATCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	9	22	+	11.6923	5.4e-05	0.223	AAAGAGTGAATCAC
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	24	34	-	11.449	5.4e-05	0.183	ACCATCTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	32	42	-	11.449	5.4e-05	0.183	ATCATGTGATT
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	32	42	-	11.449	5.4e-05	0.183	ATCATGTGATT
USF1	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	34	+	11.449	5.4e-05	0.183	ATCATGTGATT
ATF7	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	17	30	-	8.12857	5.4e-05	0.171	GCCTGACGTCAGCA
ATF7	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	32	45	+	8.12857	5.4e-05	0.171	GCCTGACGTCAGCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	7	17	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	7	17	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	7	17	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	31	41	+	10.9655	5.4e-05	0.0197	ACCACGCCTCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	33	43	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	33	43	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	63	73	+	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	27	37	-	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	31	41	-	10.9655	5.4e-05	0.0197	GCACCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	74	84	-	10.9655	5.4e-05	0.0197	ACCACGCCTCT
STAT1::STAT2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	50	64	+	10.1212	5.4e-05	0.306	GGGGTTTCCGCTTCC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	71	85	+	10.1212	5.4e-05	0.306	CCTCTTTCTGTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	71	85	+	10.1212	5.4e-05	0.306	CCTCTTTCTGTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	71	85	+	10.1212	5.4e-05	0.306	CCTCTTTCTGTTCCT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	71	85	+	10.1212	5.4e-05	0.306	CCTCTTTCTGTTCCT
STAT1::STAT2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	51	65	-	10.1212	5.4e-05	0.306	GGGGTTTCCGCTTCC
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	20	+	3.90164	5.4e-05	0.598	AGGCAGCTGACA
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	20	+	3.90164	5.4e-05	0.598	AGGCAGCTGACA
ZBTB7A	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	15	26	-	11.2714	5.4e-05	0.217	GGCGACCTCAGC
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	30	41	-	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	42	53	-	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	42	53	-	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	37	48	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	37	48	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	89	100	+	11.2714	5.4e-05	0.217	GGCGACCTCAGC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	101	112	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	101	112	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	101	112	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	101	112	+	11.2714	5.4e-05	0.217	CCCGCCCACAGC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	-	7.45455	5.4e-05	0.97	GCTAATATTAGT
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	-	7.45455	5.4e-05	0.97	GCTAATATTAGT
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	1	17	+	10.2755	5.4e-05	0.368	GGTTGAGAAAGACGTTA
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	23	36	-	6.2449	5.4e-05	0.365	TGCCCCGCAGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.1.0	40	53	+	6.2449	5.4e-05	0.365	TGCCCCGCAGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	40	53	+	6.2449	5.4e-05	0.365	TGCCCCGCAGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	79	92	+	6.2449	5.4e-05	0.365	TGCCCCGCAGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	79	92	+	6.2449	5.4e-05	0.365	TGCCCCGCAGCCAA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	81	98	+	-12.4342	5.4e-05	0.0476	AGAAGGTATGGAGGGAGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	17	34	-	-12.4342	5.4e-05	0.0476	AGAAGGTATGGAGGGAGG
RXRB	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	64	77	-	1.58182	5.4e-05	0.514	GAGGGGAAAGGTAA
RXRB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	38	51	+	1.58182	5.4e-05	0.514	GAGGGGAAAGGTAA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	38	51	+	1.58182	5.4e-05	0.514	GAGGGGAAAGGTAA
RFX3	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	+	9.75758	5.4e-05	0.319	CATTGCCCGGGCAACC
RFX3	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	-	9.75758	5.4e-05	0.319	CATTGCCCGGGCAACC
STAT1	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	36	46	-	10.9818	5.4e-05	0.356	CTTCAGGGAAG
USF2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	55	+	11.7347	5.4e-05	0.141	ACCACGTGACG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	72	85	-	6.31633	5.4e-05	0.0723	GGGCCTGTGGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	6	19	+	6.31633	5.4e-05	0.0723	GGGCCTGTGGGGGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	48	60	-	8.91379	5.4e-05	0.155	GAGGCGGAAGCAG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	48	60	-	8.91379	5.4e-05	0.155	GAGGCGGAAGCAG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	28	37	+	10.4828	5.4e-05	0.249	GACACCTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	28	37	+	10.4828	5.4e-05	0.249	GACACCTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	28	37	+	10.4828	5.4e-05	0.249	GACACCTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	28	37	+	10.4828	5.4e-05	0.249	GACACCTGAT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	21	30	-	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	21	30	-	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	21	30	-	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	21	30	-	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	21	30	-	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	20	29	+	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	20	29	+	11.1818	5.4e-05	0.908	GTTTTCCGTT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	20	29	+	11.1818	5.4e-05	0.908	GTTTTCCGTT
HINFP	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	16	27	-	11.1515	5.4e-05	0.109	CGGCCTCCGCAG
HINFP	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	37	48	+	11.1515	5.4e-05	0.109	CAACTTCCGCCG
HINFP	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	67	78	-	11.1515	5.4e-05	0.109	CAACTTCCGCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	21	37	-	4.63636	5.4e-05	0.0273	TGGGCCCCTCCCCTGGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	21	37	-	4.63636	5.4e-05	0.0273	TGGGCCCCTCCCCTGGT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	47	63	-	4.63636	5.4e-05	0.0273	CTGGCCCCACCCCAGTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	47	63	-	4.63636	5.4e-05	0.0273	CTGGCCCCACCCCAGTG
SPIC	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	42	55	-	11.2394	5.4e-05	0.254	ACACAGAGGAAGTT
FOXA1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	75	89	+	11.8163	5.4e-05	1	GGGCTGTTTGCTTTC
FOXA1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	26	40	-	11.8163	5.4e-05	1	GGGCTGTTTGCTTTC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	1	10	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	1	10	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	11	20	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	11	20	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	11	20	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	14	23	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	15	24	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	17	26	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	20	29	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	11	20	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	11	20	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	11	20	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	14	23	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	15	24	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	24	33	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	17	26	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	20	29	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	30	39	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	33	42	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	33	42	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	24	33	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	35	44	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	35	44	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	35	44	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	30	39	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	33	42	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	33	42	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	35	44	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	35	44	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	35	44	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	46	55	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	46	55	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	50	59	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	46	55	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	46	55	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	56	65	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	56	65	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	59	68	+	10.0161	5.4e-05	0.0455	GCCACGCGCT
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	59	68	+	10.0161	5.4e-05	0.0455	GCCACGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	50	59	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	60	69	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	60	69	+	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	62	71	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	62	71	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	62	71	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	62	71	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	62	71	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	64	73	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	56	65	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	56	65	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	59	68	-	10.0161	5.4e-05	0.0455	AGCGCGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	59	68	-	10.0161	5.4e-05	0.0455	AGCGCGTGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	60	69	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	60	69	-	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	62	71	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	62	71	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	62	71	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	62	71	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	62	71	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	64	73	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	82	91	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	86	95	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	86	95	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	86	95	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	86	95	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	86	95	+	10.0161	5.4e-05	0.0455	GGCGCGTGGT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	91	100	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	82	91	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	91	100	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	95	104	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	86	95	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	86	95	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	86	95	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	86	95	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	86	95	-	10.0161	5.4e-05	0.0455	ACCACGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	100	109	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	91	100	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	91	100	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	95	104	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	105	114	+	10.0161	5.4e-05	0.0455	TGCGCGCGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	100	109	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	105	114	-	10.0161	5.4e-05	0.0455	CGCGCGCGCA
PKNOX1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	-	3.42857	5.4e-05	1	TGGCAGCTGCCT
PKNOX1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	+	3.42857	5.4e-05	1	TGGCAGCTGCCT
HOXD12	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	61	-	11.5082	5.4e-05	1	AGTCATTAAAA
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	9	20	+	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	9	20	+	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	9	20	+	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	51	62	-	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	51	62	-	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	51	62	-	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
E2F8	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	95	106	-	5.70732	5.4e-05	0.631	CTTCCCGTCTAA
EGR1	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	25	38	-	10.75	5.4e-05	0.0221	GCTCCTCCTCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	29	42	-	10.75	5.4e-05	0.0221	GCTCCTCCTCCTTC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	29	42	-	10.75	5.4e-05	0.0221	GCTCCTCCTCCTTC
EGR1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	98	111	-	10.75	5.4e-05	0.0221	CCGCCTCCGCCGTA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	61	75	-	8.71429	5.41e-05	0.106	TCTCCCCCACTGCTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	61	75	-	8.71429	5.41e-05	0.106	TCTCCCCCACTGCTC
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	9	25	-	6.02041	5.41e-05	1	AGGCACAGGGGGTCCCC
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	9	25	-	6.02041	5.41e-05	1	AGGCACAGGGGGTCCCC
POU2F2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	18	30	-	11.1897	5.41e-05	1	TAGATTTACATAC
POU2F2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	18	30	-	11.1897	5.41e-05	1	TAGATTTACATAC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	87	97	-	12.2857	5.41e-05	0.176	AGCAGCTGTTC
RARA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	45	61	+	3.95082	5.41e-05	0.563	GGGGTATCAATAGGTCA
NFYB	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	7	21	-	11.1538	5.41e-05	0.162	CTGCTGACCAATGAA
NFYB	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	8	22	-	11.1538	5.41e-05	0.162	GCCGGGGCCAATGGA
KLF14	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	25	38	+	9.37931	5.41e-05	0.0337	GACCCCTCCCCCCA
KLF14	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	23	36	-	9.37931	5.41e-05	0.0337	CACCACTCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	52	65	+	9.37931	5.41e-05	0.0337	AGCCCCGCCCTCGT
KLF14	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	79	92	+	9.37931	5.41e-05	0.0337	CACCACTCCCCTCC
KLF14	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	77	90	-	9.37931	5.41e-05	0.0337	GACCCCTCCCCCCA
Ddit3::Cebpa	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	9	20	+	11.6333	5.41e-05	1	AGCTGCAATCAC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	95	106	-	11.6333	5.41e-05	1	AGCTGCAATCAC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	95	106	-	11.6333	5.41e-05	1	AGCTGCAATCAC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	33	47	+	10.7818	5.41e-05	0.109	GCCCTCCCTCTGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	81	95	+	10.7818	5.41e-05	0.109	GACGCCCTGCGGCCG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	81	95	+	10.7818	5.41e-05	0.109	GACGCCCTGCGGCCG
MAX	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	12.3462	5.41e-05	0.298	GACACGTGGT
MAX	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	12.3462	5.41e-05	0.298	GACACGTGGT
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	45	56	-	10.8276	5.41e-05	0.33	GCGCCCCCCCTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	45	56	-	10.8276	5.41e-05	0.33	GCGCCCCCCCTG
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	27	38	+	11.2368	5.41e-05	0.0304	CCCCCCCCCCTT
SP8	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	20	31	-	11.2368	5.41e-05	0.0304	GCCCCACCCAGT
SP8	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	31	42	-	11.2368	5.41e-05	0.0304	GCCCCACCCAGT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	65	76	+	11.2368	5.41e-05	0.0304	GCCCCACCCAGT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	65	76	+	11.2368	5.41e-05	0.0304	GCCCCACCCAGT
SP8	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	73	84	+	11.2368	5.41e-05	0.0304	GCCCCACCCAGT
PAX5	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	9	27	-	10.9355	5.41e-05	0.147	GAAACCAGCGGGCGGGGAC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	70	88	+	10.9355	5.41e-05	0.147	TGGGGCAATCAGCCATAAA
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	70	84	-	8	5.41e-05	0.238	TGAGTGTCTCAGCTC
NFIA	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	35	44	+	12.4222	5.41e-05	1	GGTGCCAAAC
NFIA	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	80	89	+	12.4222	5.41e-05	1	GGTGCCAAAC
Tcf21	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	101	114	-	7.10526	5.41e-05	0.56	CAGCCAGCTGCTGG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	+	10.6557	5.41e-05	0.0641	GGCCCGACAGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	+	10.6557	5.41e-05	0.0641	GGCCCGACAGGCA
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	-	10.6557	5.41e-05	0.0641	GGCCCGACAGGCA
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	-	10.6557	5.41e-05	0.0641	GGCCCGACAGGCA
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	77	94	+	11.2889	5.41e-05	0.965	GAAGCCTCAGCAGTTGGC
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	77	94	+	11.2889	5.41e-05	0.965	GAAGCCTCAGCAGTTGGC
MAFF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	77	94	+	11.2889	5.41e-05	0.965	GAAGCCTCAGCAGTTGGC
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	77	94	+	11.2889	5.41e-05	0.965	GAAGCCTCAGCAGTTGGC
MAFF	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	21	38	-	11.2889	5.41e-05	0.965	GAAGCCTCAGCAGTTGGC
INSM1	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	16	27	-	10.5408	5.41e-05	0.177	GTGCAGGGGCCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	7	17	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	7	17	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	7	17	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	7	17	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	-	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	-	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	-	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	83	93	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	-	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	93	103	-	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	12	22	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	22	32	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	22	32	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	22	32	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	22	32	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	22	32	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	+	11.6154	5.41e-05	0.0744	AGCCGGCGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	98	108	+	11.6154	5.41e-05	0.0744	CGCCCCAAGCG
JUN	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	20	32	+	10.9796	5.41e-05	0.303	TAGATGACGCCAG
JUN	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	83	95	-	10.9796	5.41e-05	0.303	TAGATGACGCCAG
HNF4G	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	2	16	+	11.1538	5.41e-05	0.335	CAGGTGCAGAGTGCC
HNF4G	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	99	113	-	11.1538	5.41e-05	0.335	CAGGTGCAGAGTGCC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	7	16	-	12.2727	5.42e-05	0.41	CCACGTGCAG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	7	16	-	12.2727	5.42e-05	0.41	CCACGTGCAG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	89	98	-	12.2727	5.42e-05	0.41	CCACGTGCAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	93	111	+	9.21311	5.42e-05	0.118	GCGCCTGGAGGTGGAGGGC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	93	111	+	9.21311	5.42e-05	0.118	GCGCCTGGAGGTGGAGGGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	93	111	+	9.21311	5.42e-05	0.118	GCGCCTGGAGGTGGAGGGC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	93	111	+	9.21311	5.42e-05	0.118	GCGCCTGGAGGTGGAGGGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	93	111	+	9.21311	5.42e-05	0.118	GCGCCTGGAGGTGGAGGGC
HEY2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	4	13	+	11.2414	5.42e-05	0.199	GGCACCTGTC
HEY2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	111	-	11.2414	5.42e-05	0.199	GGCACCTGTC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	57	71	+	10.8182	5.42e-05	0.312	GTAAAAAGAAAGTAG
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	57	71	-	10.8182	5.42e-05	0.312	ATAAAGGAAAAGTCA
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	66	80	-	10.8182	5.42e-05	0.312	GTAAAAAGAAAGTAG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	9	22	-	7.02128	5.42e-05	0.0995	CGCCCTCTGCTGCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	47	60	+	7.02128	5.42e-05	0.0995	TTACCCCTGCTGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	55	68	-	7.02128	5.42e-05	0.0995	TTACCCCTGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	93	106	+	7.02128	5.42e-05	0.0995	CGCCCTCTGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	93	106	+	7.02128	5.42e-05	0.0995	CGCCCTCTGCTGCG
KLF5	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	26	35	-	11.6735	5.42e-05	0.0209	ACCACTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	92	101	-	11.6735	5.42e-05	0.0209	CCCACTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	92	101	-	11.6735	5.42e-05	0.0209	CCCACTCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	8	17	+	11.6735	5.42e-05	0.0209	ACCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	14	23	+	11.6735	5.42e-05	0.0209	CCCACTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	14	23	+	11.6735	5.42e-05	0.0209	CCCACTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	80	89	+	11.6735	5.42e-05	0.0209	ACCACTCCCC
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	48	64	-	-4.49438	5.42e-05	1	CAGGGCCAAAGTTTAAT
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	77	93	-	-4.49438	5.42e-05	1	CAGGGCCAAAGTTTAAT
Znf423	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	90	104	-	6.57303	5.42e-05	0.277	GCCCGCCATGGTTCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	-	10.5172	5.42e-05	0.0554	TCCCTGCGGGGGG
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	+	8.6789	5.42e-05	0.848	TGGCAGATGGCA
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	+	8.6789	5.42e-05	0.848	TGGCAGATGGCA
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	+	8.6789	5.42e-05	0.848	TGGCAGATGGCA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	+	8.6789	5.42e-05	0.848	TGGCAGATGGCA
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	+	11.8654	5.42e-05	0.805	GTTGCGTAAT
Creb5	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	28	39	+	9.41818	5.42e-05	0.205	AGTGACATCACA
Creb5	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	62	73	+	9.41818	5.42e-05	0.205	CCTGACATCACT
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	+	9.41818	5.42e-05	0.205	CCTTACGTAATT
Creb5	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	33	44	-	9.41818	5.42e-05	0.205	CCTGACATCACT
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	13	26	+	6.90244	5.42e-05	0.5	GGTGCACAAGGCGC
Twist2	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	3	12	+	12.1148	5.42e-05	1	GCCACATGTA
Twist2	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	103	112	-	12.1148	5.42e-05	1	GCCACATGTA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	19	33	-	7.08621	5.42e-05	0.0386	CACTGCCCCCTCATT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	19	33	-	7.08621	5.42e-05	0.0386	CACTGCCCCCTCATT
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	14	26	+	11.7143	5.42e-05	0.427	CCAAGGTCACCCA
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	14	26	+	11.7143	5.42e-05	0.427	CCAAGGTCACCCA
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	14	26	+	11.7143	5.42e-05	0.427	CCAAGGTCACCCA
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	29	40	+	10.5306	5.42e-05	0.177	GGGATGGGGCCG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	29	40	+	10.5306	5.42e-05	0.177	GGGATGGGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	94	105	-	10.5306	5.42e-05	0.177	TTGCAGGGGCTG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.1.0	94	105	-	10.5306	5.42e-05	0.177	TTGCAGGGGCTG
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	44	55	+	3.86885	5.42e-05	0.598	TGGCAGGTGGCG
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	44	55	+	3.86885	5.42e-05	0.598	TGGCAGGTGGCG
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	44	55	+	3.86885	5.42e-05	0.598	TGGCAGGTGGCG
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	44	55	+	3.86885	5.42e-05	0.598	TGGCAGGTGGCG
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	60	71	-	3.86885	5.42e-05	0.598	TGGCAGGTGGCG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	33	43	-	11.6	5.42e-05	0.139	ACCGGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	33	43	-	11.6	5.42e-05	0.139	ACCGGGAAGTC
ELF5	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	45	55	+	11.6	5.42e-05	0.139	ATCCGGAAGAG
HSF1	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	40	52	+	7.77049	5.42e-05	1	CTCGGGAAGTTTC
NKX2-8	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	73	81	+	11.3462	5.42e-05	1	CCACTTCAC
NKX2-8	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	87	95	+	11.3462	5.42e-05	1	CCACTTCAC
NKX2-8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	26	34	-	11.3462	5.42e-05	1	CCACTTCAC
ETV1	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	11.6182	5.42e-05	0.114	GCCGGATGCG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	11.6182	5.42e-05	0.114	GCCGGATGCG
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	+	10.7755	5.43e-05	0.852	GTTACGTAAT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	8	23	+	10.6727	5.43e-05	0.039	ACACGCGCGCGCACAC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	8	23	+	10.6727	5.43e-05	0.039	ACACGCGCGCGCACAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	30	45	+	10.6727	5.43e-05	0.039	ACACGCGCGCGCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	30	45	+	10.6727	5.43e-05	0.039	ACACGCGCGCGCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	34	-	10.6727	5.43e-05	0.039	CCCCGGCCCCGCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	34	-	10.6727	5.43e-05	0.039	CCCCGGCCCCGCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	34	-	10.6727	5.43e-05	0.039	CCCCGGCCCCGCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	19	34	-	10.6727	5.43e-05	0.039	CCCCGGCCCCGCCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	19	34	-	10.6727	5.43e-05	0.039	CCCCGGCCCCGCCCTC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	44	59	-	10.6727	5.43e-05	0.039	GCCCGCGCACGCTCAC
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	40	54	-	9.88571	5.43e-05	0.122	AAGGGGAGGAGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	40	54	-	9.88571	5.43e-05	0.122	AAGGGGAGGAGGGCA
NR2C2	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	64	78	-	9.88571	5.43e-05	0.122	GCGGGGCTGGGGGCA
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	45	57	-	10.5303	5.43e-05	0.936	GTTACTTAATAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	45	57	-	10.5303	5.43e-05	0.936	GTTACTTAATAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	45	57	-	10.5303	5.43e-05	0.936	GTTACTTAATAAC
RXRA::VDR	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	24	38	-	6.62385	5.43e-05	1	GCGTCACCGGGGTCA
RXRA::VDR	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	77	91	+	6.62385	5.43e-05	1	GCGTCACCGGGGTCA
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	1	10	-	11.2857	5.43e-05	0.0209	GGGGTGCGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	5	14	-	11.2857	5.43e-05	0.0209	GGGGTGCGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	67	76	+	11.2857	5.43e-05	0.0209	GGGGTGCGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	67	76	+	11.2857	5.43e-05	0.0209	GGGGTGCGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	101	110	+	11.2857	5.43e-05	0.0209	GGGGTGCGGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	82	99	-	-12.4605	5.43e-05	0.0478	GGAAGGCATGAGAGAATG
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	52	62	+	11.2245	5.43e-05	0.531	AGTGCGGGCGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	52	62	+	11.2245	5.43e-05	0.531	AGTGCGGGCGC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	19	33	-	8.90164	5.43e-05	0.0617	CGCCCCGCCCCCATG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	19	33	-	8.90164	5.43e-05	0.0617	CGCCCCGCCCCCATG
ATF7	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	70	83	-	8.11429	5.43e-05	0.171	GGCTGACGTCAGGG
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	8	17	-	11.8	5.43e-05	0.721	ATTATGCAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	8	17	-	11.8	5.43e-05	0.721	ATTATGCAAC
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	31	40	-	11.8	5.43e-05	0.721	ATTATGCAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	31	40	-	11.8	5.43e-05	0.721	ATTATGCAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	8	17	-	11.82	5.43e-05	0.821	GTGACGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	8	17	-	11.82	5.43e-05	0.821	GTGACGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	34	43	-	11.82	5.43e-05	0.821	GTGACGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	61	70	+	11.82	5.43e-05	0.821	GTGACGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	40	49	+	11.8	5.43e-05	0.721	ATTATGCAAC
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	40	49	+	11.8	5.43e-05	0.721	ATTATGCAAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	17	26	+	11.0275	5.43e-05	0.0553	GCTCCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	17	26	+	11.0275	5.43e-05	0.0553	GCTCCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	3	12	-	11.0275	5.43e-05	0.0553	GCTCCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	17	26	-	11.0275	5.43e-05	0.0553	GCTCCCCCAC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	13	29	+	4.61818	5.43e-05	0.0273	AAAGCCCCTCCCAGCAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	13	29	+	4.61818	5.43e-05	0.0273	AAAGCCCCTCCCAGCAC
SP4	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	19	35	-	4.61818	5.43e-05	0.0273	ACTTCCCCGCCCCTTTA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	27	43	-	4.61818	5.43e-05	0.0273	CAGGCCCCGCCCGGGCC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	27	43	-	4.61818	5.43e-05	0.0273	CAGGCCCCGCCCGGGCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	27	43	-	4.61818	5.43e-05	0.0273	CAGGCCCCGCCCGGGCC
SP4	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	72	88	+	4.61818	5.43e-05	0.0273	CAGGCCCCGCCCGGGCC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	97	108	+	11.5204	5.43e-05	0.0866	GGCCTGGAGGCA
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	27	36	+	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	27	36	+	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.2.0	27	36	+	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	65	74	-	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	65	74	-	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	76	85	-	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.2.0	76	85	-	10.8469	5.43e-05	0.219	TTGAATTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	76	85	-	10.8469	5.43e-05	0.219	TTGAATTTCC
EGR2	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	14	24	-	9.98276	5.43e-05	0.0818	ACGCCTACACT
Pitx1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	84	91	+	11.0182	5.43e-05	1	TTAATCCA
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	25	35	-	11.3607	5.43e-05	0.0597	CCGGAACCGGA
Gabpa	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	37	47	+	11.3607	5.43e-05	0.0597	CCGGAACCGGA
Gabpa	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	45	55	+	11.3607	5.43e-05	0.0597	CCGGAACCGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	60	70	-	11.3607	5.43e-05	0.0597	CCGGAACCGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	60	70	-	11.3607	5.43e-05	0.0597	CCGGAACCGGA
Gabpa	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	68	78	-	11.3607	5.43e-05	0.0597	CCGGAACCGGA
BATF3	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	24	37	+	1.77273	5.43e-05	0.196	TTGTGACGTAAGCC
BATF3	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	46	59	+	1.77273	5.43e-05	0.196	TGATGGCGTCACGA
BATF3	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	54	67	+	1.77273	5.43e-05	0.196	TTGTGACGTAAGCC
BATF3	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	71	84	-	1.77273	5.43e-05	0.196	TGATGGCGTCACGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	25	39	-	8.7	5.43e-05	0.106	TCCCTCCTGCAGAGG
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	93	108	-	3.90909	5.43e-05	0.432	CCTGTCAAAGTCCAGT
PLAG1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	56	69	+	6.29592	5.44e-05	0.0723	GGGGCTGTGGGAGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	60	73	+	6.29592	5.44e-05	0.0723	GGGGCGGCAGGGGA
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	96	111	-	2.36207	5.44e-05	0.349	CTCCCATCGTCCCTAA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	77	91	+	7.98684	5.44e-05	0.238	GGCGAGACTCGGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	77	91	+	7.98684	5.44e-05	0.238	GGCGAGACTCGGCGC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	73	85	+	10.2787	5.44e-05	0.575	TGATGACGCCACG
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	73	85	+	10.2787	5.44e-05	0.575	TGATGACGCCACG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	16	27	-	11.6	5.44e-05	0.055	CGCCCCCCGCCG
TFAP2A(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	27	38	+	11.6	5.44e-05	0.055	CGCCCTCAGCCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	23	34	-	11.6	5.44e-05	0.055	CGCCCCCCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	+	11.6	5.44e-05	0.055	CGCCCGCAGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	+	11.6	5.44e-05	0.055	CGCCCGCAGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	55	66	+	11.6	5.44e-05	0.055	TGCCCTGAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	45	56	-	11.6	5.44e-05	0.055	TCCCTCCAGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	45	56	-	11.6	5.44e-05	0.055	TCCCTCCAGCCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	59	70	+	11.6	5.44e-05	0.055	TCCCTCCAGCCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	49	60	-	11.6	5.44e-05	0.055	TGCCCTGAGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	92	+	11.6	5.44e-05	0.055	CGCCCCCCGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	76	87	-	11.6	5.44e-05	0.055	CGCCCCCCGCCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	77	88	-	11.6	5.44e-05	0.055	CGCCCTCAGCCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	100	111	-	11.6	5.44e-05	0.055	CGCCTGGAGGCT
TGIF1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	103	114	-	1.23077	5.44e-05	0.932	TGACAGCAGCCA
EVX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	+	10.4151	5.44e-05	1	CGTCATTAGC
EVX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	+	10.4151	5.44e-05	1	CGTCATTAGC
EVX1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	-	10.4151	5.44e-05	1	CGTCATTAGC
EVX1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	+	10.4151	5.44e-05	1	CGTCATTAGC
EVX1	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	-	10.4151	5.44e-05	1	CGTCATTAGC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	11.5319	5.44e-05	0.12	ACCGGAACTG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	11.5319	5.44e-05	0.12	ACCGGAACTG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	76	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	76	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	107	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	107	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	107	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	107	+	11.2759	5.44e-05	0.128	GGCAGCTGCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	2	16	+	10.8793	5.44e-05	0.0128	CTTCCTCCTCCGCCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	2	16	+	10.8793	5.44e-05	0.0128	CTTCCTCCTCCGCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	4	18	+	10.8793	5.44e-05	0.0128	CTCCCTCCTTCGCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	34	48	+	10.8793	5.44e-05	0.0128	CTCCCGCCCAGCGAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	34	48	+	10.8793	5.44e-05	0.0128	CTCCCGCCCAGCGAC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	62	76	+	10.8793	5.44e-05	0.0128	TGCCCTCCCTCAGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	62	76	+	10.8793	5.44e-05	0.0128	TGCCCTCCCTCAGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	62	76	+	10.8793	5.44e-05	0.0128	TGCCCTCCCTCAGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	19	-	10.8793	5.44e-05	0.0128	CGCCCTCCTTCCGGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	19	-	10.8793	5.44e-05	0.0128	CGCCCTCCTTCCGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	60	-	10.8793	5.44e-05	0.0128	CGCCCTCCTTCCGGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	60	-	10.8793	5.44e-05	0.0128	CGCCCTCCTTCCGGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	60	-	10.8793	5.44e-05	0.0128	CGCCCTCCTTCCGGC
PAX1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	83	99	+	6.32727	5.44e-05	0.619	CGCCCCGCGTCAGCGCG
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	16	32	-	6.32727	5.44e-05	0.619	CGCCCCGCGTCAGCGCG
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	16	32	-	6.32727	5.44e-05	0.619	CGCCCCGCGTCAGCGCG
TFEB	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	11.7308	5.44e-05	0.152	GCCACGTGAG
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	11.7308	5.44e-05	0.152	GCCACGTGAG
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	11.7308	5.44e-05	0.152	GCCACGTGAG
SP3	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	12	22	-	11.3821	5.44e-05	0.0208	CCCTCGCCCAC
USF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	15	25	-	11.4286	5.44e-05	0.183	GTCATCTGACC
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	15	25	-	11.4286	5.44e-05	0.183	GTCATCTGACC
SP8	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	52	63	-	11.2237	5.44e-05	0.0306	CCCACCCCTCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	88	99	+	11.2237	5.44e-05	0.0306	GCACCGCCCAGT
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	9.98182	5.44e-05	0.242	GTCACGTGGT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	9.98182	5.44e-05	0.242	GTCACGTGGT
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	+	11.4364	5.44e-05	0.655	ACCAGCTGCT
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	+	11.4364	5.44e-05	0.655	ACCAGCTGCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	14	27	-	9.36207	5.44e-05	0.0337	GGCCCCGCCCCAGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	14	27	-	9.36207	5.44e-05	0.0337	GGCCCCGCCCCAGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	14	27	-	9.36207	5.44e-05	0.0337	GGCCCCGCCCCAGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	30	43	-	9.36207	5.44e-05	0.0337	GGCCCCGCCCCAGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	30	43	-	9.36207	5.44e-05	0.0337	GGCCCCGCCCCAGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	57	70	+	9.36207	5.44e-05	0.0337	GACCCCTCCCCCAT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	57	70	+	9.36207	5.44e-05	0.0337	GACCCCTCCCCCAT
ZEB1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	89	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	114	+	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	26	34	-	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	26	34	-	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	26	34	-	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	26	34	-	11.9273	5.44e-05	0.383	TCGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	26	34	-	11.9273	5.44e-05	0.383	TCGCACCTG
BCL6B	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	93	109	-	-15.3857	5.44e-05	0.94	CGCGTTCCCGGCATTCC
BCL6B	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	6	22	+	-15.3857	5.44e-05	0.94	CGCGTTCCCGGCATTCC
MTF1	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	2	15	+	6.89024	5.44e-05	0.5	TCCGCAGCCGGCCC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	100	113	-	6.89024	5.44e-05	0.5	TCCGCAGCCGGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	100	113	-	6.89024	5.44e-05	0.5	TCCGCAGCCGGCCC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	100	113	-	6.89024	5.44e-05	0.5	TCCGCAGCCGGCCC
MTF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	100	113	-	6.89024	5.44e-05	0.5	TCCGCAGCCGGCCC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	68	78	-	11.4483	5.45e-05	0.0475	GGGCGGGGGAC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	68	78	-	11.4483	5.45e-05	0.0475	GGGCGGGGGAC
NKX3-2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	51	59	-	11.8654	5.45e-05	1	CGCACTTAA
NKX3-2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	51	59	-	11.8654	5.45e-05	1	CGCACTTAA
NKX3-2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	73	81	+	11.8654	5.45e-05	1	ACCACTTAC
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	60	74	+	11.4507	5.45e-05	0.341	CTAGTGTAAACAAGT
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	60	74	+	11.4507	5.45e-05	0.341	CTAGTGTAAACAAGT
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	5	19	-	11.4507	5.45e-05	0.341	CTAGTGTAAACAAGT
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	5	19	-	11.4507	5.45e-05	0.341	CTAGTGTAAACAAGT
IRF1	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	59	79	+	9.5	5.45e-05	0.178	TGAAGTTTTCTCTTTCTCTCG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	76	89	-	11.2254	5.45e-05	0.254	AAAATGAGGAAAGA
Foxq1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	12	22	+	11.898	5.45e-05	1	ATTTGTTTATT
Foxq1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	93	103	-	11.898	5.45e-05	1	ATTTGTTTATT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	4	24	-	10.0612	5.45e-05	0.0176	GGAAGAGTGACAGAGGGAAGT
ZNF263	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	23	43	-	10.0612	5.45e-05	0.0176	GGGGCCGCAAGAGGCGGGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	38	58	+	10.0612	5.45e-05	0.0176	GGGGCGGGGCTGAGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	54	74	+	10.0612	5.45e-05	0.0176	GGAAGAGTGACAGAGGGAAGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	54	74	+	10.0612	5.45e-05	0.0176	GGAAGAGTGACAGAGGGAAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	54	74	+	10.0612	5.45e-05	0.0176	GGAAGAGTGACAGAGGGAAGT
ZNF263	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	72	92	+	10.0612	5.45e-05	0.0176	GGGGCCGCAAGAGGCGGGAGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	2	12	+	11.6909	5.45e-05	0.0608	GGGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	2	12	+	11.6909	5.45e-05	0.0608	GGGCTTCCTGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	90	100	+	11.6909	5.45e-05	0.0608	GGGCTTCCTGC
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	45	59	+	11.1712	5.45e-05	0.182	GAGGGACAGAGTGGA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	85	99	+	11.1712	5.45e-05	0.182	GAGGGACAGAGTGGA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	16	30	-	11.1712	5.45e-05	0.182	GAGGGACAGAGTGGA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	56	70	-	11.1712	5.45e-05	0.182	GAGGGACAGAGTGGA
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	+	10.5	5.45e-05	0.0554	GGCCCGACAGGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	15	-	10.5	5.45e-05	0.0554	GCCCCCTCGGGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	+	10.5	5.45e-05	0.0554	CGCCTCCCGGGGT
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	+	10.5	5.45e-05	0.0554	GGCCCGACAGGCA
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	-	10.5	5.45e-05	0.0554	GGCCCGACAGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	-	10.5	5.45e-05	0.0554	GGCCCGACAGGCA
TFE3	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	11.3469	5.45e-05	0.132	ACCACGTGTC
TFE3	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	11.3469	5.45e-05	0.132	ACCACGTGTC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	29	40	+	4.10345	5.45e-05	0.189	TGCCACGTGACC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	29	40	+	4.10345	5.45e-05	0.189	TGCCACGTGACC
CREB3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	38	51	-	10.2286	5.45e-05	0.252	ATGCCACGCCAGCG
CREB3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	38	51	-	10.2286	5.45e-05	0.252	ATGCCACGCCAGCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	61	74	+	10.2286	5.45e-05	0.252	GTGTTACGTCACAG
ZBTB33	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	55	69	-	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	46	60	+	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	46	60	+	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	46	60	+	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	46	60	+	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	46	60	+	10.7424	5.45e-05	0.108	CGCTCGCGCTACGTC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	+	10.8033	5.45e-05	0.0586	AGCCGGGCGGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	12	-	11.5102	5.45e-05	0.0866	CCCCCTGAGGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	8	18	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	8	18	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	10	20	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	10	20	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	10	20	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	32	42	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	32	42	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	32	42	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	38	48	+	9.96552	5.45e-05	0.0818	CCTCCCCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	66	76	-	9.96552	5.45e-05	0.0818	ACGCCCCCTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	66	76	-	9.96552	5.45e-05	0.0818	ACGCCCCCTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	66	76	-	9.96552	5.45e-05	0.0818	ACGCCCCCTCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	66	76	-	9.96552	5.45e-05	0.0818	ACGCCCCCTCG
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	+	11.5345	5.45e-05	1	TACATATGGT
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	97	108	-	10.4182	5.45e-05	1	GACCATATGTAG
SP1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	70	80	+	11.3846	5.45e-05	0.0145	GCCCCGCCTTA
GLIS3	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	27	40	+	4.54545	5.45e-05	0.379	GGCCACCCACACAG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	56	69	+	4.54545	5.45e-05	0.379	GGCCACCCACACAG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	46	59	-	4.54545	5.45e-05	0.379	GGCCACCCACACAG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	75	88	-	4.54545	5.45e-05	0.379	GGCCACCCACACAG
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	47	58	+	7.44898	5.45e-05	0.182	GATGGCGTCACG
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	68	79	-	7.44898	5.45e-05	0.182	GATGGCGTCACG
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	72	83	-	7.44898	5.45e-05	0.182	GATGGCGTCACG
ID4	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	67	76	-	12.6066	5.45e-05	0.389	GGCACCTGGT
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	24	33	+	12.6066	5.45e-05	0.389	GGCACCTGGT
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	24	33	+	12.6066	5.45e-05	0.389	GGCACCTGGT
NFYB	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	13	27	+	11.1346	5.45e-05	0.162	GAGATGGCCAATGAC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	17	26	-	11.3535	5.45e-05	0.169	AGAGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	43	52	+	11.3535	5.45e-05	0.169	TTAGGGGAAA
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	59	68	-	11.3535	5.45e-05	0.169	AGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	91	100	-	11.3535	5.45e-05	0.169	AGAGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	91	100	-	11.3535	5.45e-05	0.169	AGAGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	91	100	-	11.3535	5.45e-05	0.169	AGAGGGGGAA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	+	10.6393	5.45e-05	0.0641	TGCCTGTGCGGCA
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	69	80	+	11.0862	5.45e-05	0.365	GAGACCCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	13	26	-	10.7308	5.45e-05	0.0222	CTCCCACCTCCAGA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	52	65	-	10.7308	5.45e-05	0.0222	AGGCCGCCCCTGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	52	65	-	10.7308	5.45e-05	0.0222	CTGCCTCTCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	52	65	-	10.7308	5.45e-05	0.0222	CTGCCTCTCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	90	103	-	10.7308	5.45e-05	0.0222	ACTCCGCTCACTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	94	107	-	10.7308	5.45e-05	0.0222	CCGCTGCCGCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	100	113	-	10.7308	5.45e-05	0.0222	CTGCCTCTCCCGCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	100	113	-	10.7308	5.45e-05	0.0222	CTGCCTCTCCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	100	113	-	10.7308	5.45e-05	0.0222	CTGCCTCTCCCGCT
EGR1	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	77	90	+	10.7308	5.45e-05	0.0222	ACCACTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	89	102	+	10.7308	5.45e-05	0.0222	AGGCCGCCCCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	89	102	+	10.7308	5.45e-05	0.0222	AGGCCGCCCCTGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	101	114	+	10.7308	5.45e-05	0.0222	CGCTCTCCCACACC
EGR1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	101	114	+	10.7308	5.45e-05	0.0222	GGCTCGCCGCCGCC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	42	55	-	8.7541	5.45e-05	0.185	GACCCCCAGCCCTG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	69	82	+	8.7541	5.45e-05	0.185	ACCCCCCCGCCATC
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	30	41	-	8.66972	5.46e-05	0.848	TGTCAGCTCTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	30	41	-	8.66972	5.46e-05	0.848	TGTCAGCTCTCA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	11.4545	5.46e-05	0.108	GCCGGAAATG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	11.4545	5.46e-05	0.108	GCCGGAAATG
ETV5	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	11.4545	5.46e-05	0.108	GCCGGAAATG
ETV5	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	11.4545	5.46e-05	0.108	GCCGGAAATG
ETV5	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	11.4545	5.46e-05	0.108	GCCGGAAATG
POU1F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	66	79	-	10.931	5.46e-05	1	AAGATGGAAATTAC
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	66	79	-	10.931	5.46e-05	1	AAGATGGAAATTAC
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	15	29	+	10.2424	5.46e-05	0.308	CTCTCTGACTCAGGA
SP4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	18	34	-	4.6	5.46e-05	0.0273	CCCCCCCCGCCCCCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	54	70	-	4.6	5.46e-05	0.0273	CAGCCCCCGCCCGCCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	75	91	+	4.6	5.46e-05	0.0273	CCCCCCCCGCCCCCCCG
SP4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	81	97	+	4.6	5.46e-05	0.0273	CCCCCCCCGCCCCCCCG
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	22	31	-	11.764	5.46e-05	0.871	ATGGGATGAC
BHLHE41	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	98	107	+	8.69231	5.46e-05	0.177	GGCACGAGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	8	17	-	8.69231	5.46e-05	0.177	GGCACGAGAC
IRF2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	75	92	-	5.88991	5.46e-05	0.626	TAAAAGCGAAAGGACCAG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	47	+	10.7636	5.46e-05	0.109	CCCCCCCCCCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	25	39	-	10.7636	5.46e-05	0.109	CCCCCCCCGCCAAGT
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	56	70	+	10.7636	5.46e-05	0.109	GCCGCCCCGCGGGCT
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	97	111	+	7.97368	5.46e-05	0.238	CTGGAGACTCAGCGA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	79	93	-	9.87143	5.46e-05	0.122	CAGGGTTAAAGTCCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	79	93	-	9.87143	5.46e-05	0.122	CAGGGTTAAAGTCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	79	93	-	9.87143	5.46e-05	0.122	CAGGGTTAAAGTCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	79	93	-	9.87143	5.46e-05	0.122	CAGGGTTAAAGTCCG
HOXB13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	5	14	+	11.5091	5.46e-05	1	CCCATAAACT
HOXB13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	5	14	+	11.5091	5.46e-05	1	CCCATAAACT
HOXB13	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	101	110	-	11.5091	5.46e-05	1	CCCATAAACT
Klf12	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	35	49	-	8.88525	5.46e-05	0.0618	GGCCAAGCCTTTCTC
Klf12	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	66	80	+	8.88525	5.46e-05	0.0618	GGCCAAGCCTTTCTC
MEF2D	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	14	25	-	7.41818	5.46e-05	0.97	GTTAAATATAGA
MEF2D	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	14	25	-	7.41818	5.46e-05	0.97	GTTAAATATAGA
PAX5	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	38	56	+	10.9194	5.46e-05	0.147	CTGGGAACCGGGGCGGGGA
PAX5	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	59	77	-	10.9194	5.46e-05	0.147	CTGGGAACCGGGGCGGGGA
Crem	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	35	44	+	12.1967	5.46e-05	0.281	TGTGACGTAG
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	14	30	-	3.91803	5.46e-05	0.563	GGGGCATCTCGAGGGCG
ZBTB18	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	57	69	+	10.2143	5.46e-05	0.729	TTGGCAGCTGTTG
POU3F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	28	40	-	11.2	5.46e-05	1	ATTATGCAACTTT
POU3F3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	28	40	-	11.2	5.46e-05	1	ATTATGCAACTTT
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	23	42	-	4.41284	5.46e-05	0.0586	CCACCGCCCCCCCCCACCAT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	54	73	+	4.41284	5.46e-05	0.0586	CCCCCCACCCCACCCCGCTG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	54	73	+	4.41284	5.46e-05	0.0586	CCCCCCACCCCACCCCGCTG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	54	73	+	4.41284	5.46e-05	0.0586	CCCCCCACCCCACCCCGCTG
JUND	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	21	31	-	11.0851	5.46e-05	0.208	AGTGATTCATT
JUND	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	88	98	+	11.0851	5.46e-05	0.208	AGTGATTCATT
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	32	42	-	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	71	81	+	12.0172	5.46e-05	1	GCTTATCTTAC
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	19	29	+	12.1186	5.46e-05	1	TAACCATAAAA
ELF1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	20	-	9.61818	5.46e-05	0.115	CCACCGGAAATG
ELF1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	25	36	+	9.61818	5.46e-05	0.115	CCACCGGAAATG
ELF1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	90	-	9.61818	5.46e-05	0.115	CCACCGGAAATG
ELF1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	95	106	+	9.61818	5.46e-05	0.115	CCACCGGAAATG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	13	22	-	12.6154	5.46e-05	0.404	TGCACCTGTA
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	13	22	-	12.6154	5.46e-05	0.404	TGCACCTGTA
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	46	55	-	12.6154	5.46e-05	0.404	TGCACCTGTA
TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	46	55	-	12.6154	5.46e-05	0.404	TGCACCTGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	60	69	+	11.4857	5.46e-05	0.101	ACCGGCAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	60	69	+	11.4857	5.46e-05	0.101	ACCGGCAGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	102	111	+	11.4857	5.46e-05	0.101	ACCGGGAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	102	111	+	11.4857	5.46e-05	0.101	ACCGGGAGTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	72	85	+	11.2727	5.46e-05	0.0574	CAACGCTCGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	64	77	-	11.2727	5.46e-05	0.0574	GGGGCGCGGGCCTG
ZIC3	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	21	35	+	8.68571	5.46e-05	0.106	GGACTCCTGCTGAGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	23	37	-	8.68571	5.46e-05	0.106	GGACTCCTGCTGAGG
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	23	37	-	8.68571	5.46e-05	0.106	GGACTCCTGCTGAGG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	78	92	+	8.68571	5.46e-05	0.106	GGACTCCTGCTGAGG
ZIC3	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	80	94	-	8.68571	5.46e-05	0.106	GGACTCCTGCTGAGG
MIXL1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	10.1667	5.46e-05	1	GCCAATTAGG
MIXL1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	10.1667	5.46e-05	1	ACTAATTAGA
Ascl2	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	87	96	-	11.3286	5.47e-05	0.217	GGCAGCTGTA
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	30	+	11.3286	5.47e-05	0.217	GGCAGCTGTG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	30	+	11.3286	5.47e-05	0.217	GGCAGCTGTG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	30	+	11.3286	5.47e-05	0.217	GGCAGCTGTG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	30	+	11.3286	5.47e-05	0.217	GGCAGCTGTG
HES5	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	93	104	-	3.53448	5.47e-05	0.298	TGGCACGTTCCT
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	52	62	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	52	62	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	52	62	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	52	62	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	104	114	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	104	114	+	11.898	5.47e-05	0.335	GCTTCTAGGAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	99	110	+	11.377	5.47e-05	0.41	AATGGCGCCACC
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	99	110	+	11.377	5.47e-05	0.41	AATGGCGCCACC
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	81	91	+	12.1364	5.47e-05	1	CTATAAACAGA
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	79	93	+	10.0909	5.47e-05	0.306	TAAGTTTCACTTACG
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	22	36	-	10.0909	5.47e-05	0.306	TAAGTTTCACTTACG
SP8	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	18	29	+	11.2105	5.47e-05	0.0307	GCCCCGCCCACG
NFIL3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	10	20	+	11.3636	5.47e-05	1	TGACGTAACCC
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	10	20	+	11.3636	5.47e-05	1	TGACGTAACCC
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	10	20	+	11.3636	5.47e-05	1	TGACGTAACCC
NFIL3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	10	20	+	11.3636	5.47e-05	1	TGACGTAACCC
NFIL3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	18	28	+	11.3636	5.47e-05	1	TGACGTAACCC
NFIL3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	51	61	-	11.3636	5.47e-05	1	TGACGTAACCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	25	35	-	10.6	5.47e-05	0.019	CCGCCTGTGCC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	+	11.2182	5.47e-05	0.204	GCTGAGTCACA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	+	11.2182	5.47e-05	0.204	GCTGAGTCACA
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	+	11.2182	5.47e-05	0.204	GCTGAGTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	+	11.2182	5.47e-05	0.204	GCTGAGTCACA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	18	27	+	11	5.47e-05	0.0553	GCACCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	32	41	-	11	5.47e-05	0.0553	GCACCCCCCC
HNF4G	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	42	56	-	11.1346	5.47e-05	0.335	CAGGGCCAAGGTACA
HNF4G	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	59	73	+	11.1346	5.47e-05	0.335	CAGGGCCAAGGTACA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	75	89	+	11.1346	5.47e-05	0.335	ACAAAGCAAAGTTCT
Myog	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	62	+	12.2449	5.47e-05	0.148	GACAGCTGTGT
Myog	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	46	56	-	12.2449	5.47e-05	0.148	GGCAGGTGCCC
GLIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	25	38	-	4.5303	5.47e-05	0.379	GACCTCCTACCAAT
GLIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	25	38	-	4.5303	5.47e-05	0.379	GACCTCCTACCAAT
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	28	+	10.623	5.47e-05	0.0641	AGCCCTTCCGGGA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	99	-	10.623	5.47e-05	0.0641	AGCCCTTCCGGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	14	22	+	10.2632	5.47e-05	0.215	CTGCCCGCT
THAP1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	94	102	+	10.2632	5.47e-05	0.215	CTGCCCGCT
THAP1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	13	21	-	10.2632	5.47e-05	0.215	CTGCCCGCT
THAP1	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	77	85	-	10.2632	5.47e-05	0.215	CTGCCCGCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	5	15	+	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	5	15	+	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	78	88	+	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	22	32	-	10.931	5.48e-05	0.0199	GCCCAGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	27	37	-	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	27	37	-	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	47	57	-	10.931	5.48e-05	0.0199	CCCACGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	71	81	-	10.931	5.48e-05	0.0199	AGCACGCCCCT
Sox11	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	79	93	-	-13.1286	5.48e-05	1	AACAGGCTCAGTGTG
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	25	40	-	11.0732	5.48e-05	1	TGAGATGCAAATTCCT
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	22	37	+	11.0732	5.48e-05	1	TGAGATGCAAATTCCT
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	22	37	+	11.0732	5.48e-05	1	TGAGATGCAAATTCCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	-	10.4828	5.48e-05	0.0554	AGCCTACGGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	+	10.4828	5.48e-05	0.0554	AGCCCGCGCGGCC
IRF8	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	7	20	-	-1.41818	5.48e-05	0.732	GCCAAACTGAAAGC
IRF8	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	95	108	+	-1.41818	5.48e-05	0.732	GCCAAACTGAAAGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	37	50	+	6.27551	5.48e-05	0.0723	GTGGGGCTGAGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	37	50	+	6.27551	5.48e-05	0.0723	GTGGGGCTGAGGGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	54	67	+	6.27551	5.48e-05	0.0723	GTGGGGCTGTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	70	83	+	6.27551	5.48e-05	0.0723	GGGGCCGGCTGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	70	83	+	6.27551	5.48e-05	0.0723	GGGGCCGGCTGGTG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	75	88	+	6.27551	5.48e-05	0.0723	GGGGGGCTATGGGC
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	52	71	-	4.40367	5.48e-05	0.0586	CACGCCCCCCCCCCCTCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	58	77	-	4.40367	5.48e-05	0.0586	CACGCCCCCCCCCCCTCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	8	27	+	4.40367	5.48e-05	0.0586	CACGCCCCCCCCCCCTCCCC
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	38	57	+	4.40367	5.48e-05	0.0586	CACGCCCCCCCCCCCTCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	44	63	+	4.40367	5.48e-05	0.0586	CACGCCCCCCCCCCCTCCCC
Klf4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	12	21	+	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	26	35	+	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	26	35	+	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	26	35	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	39	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	51	60	+	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	56	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	58	67	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	58	67	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	80	89	+	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	80	89	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
Klf4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	94	103	-	11.2041	5.48e-05	0.021	GGGGAGGGGT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	25	34	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	25	34	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	67	76	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	67	76	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	73	82	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	75	84	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	89	98	-	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	14	23	+	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	17	26	+	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	31	40	+	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	39	48	+	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	45	54	+	11.6531	5.48e-05	0.021	TCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	45	54	+	11.6531	5.48e-05	0.021	TCTCCACCCC
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	19	31	-	11.1552	5.48e-05	1	GACATTTGCATCA
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	19	31	-	11.1552	5.48e-05	1	GACATTTGCATCA
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	96	108	+	11.1552	5.48e-05	1	GACATTTGCATCA
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	96	108	+	11.1552	5.48e-05	1	GACATTTGCATCA
TFAP2A	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	+	11.6727	5.48e-05	0.0549	GGCCTCCGGCT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	-	11.6727	5.48e-05	0.0549	GGCCTCCGGCT
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	65	81	+	-4.70909	5.48e-05	1	GCGGTCATCGCGGGTGA
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	75	89	-	11.0962	5.48e-05	0.437	AGGGCAGATTGCCTA
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	75	89	-	11.0962	5.48e-05	0.437	AGGGCAGATTGCCTA
E2F4	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	8	18	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	29	39	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	31	41	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	31	41	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	31	41	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	31	41	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	31	41	-	11.4138	5.48e-05	0.0475	GGGCGGGGACC
Foxd3	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	15	26	+	11.6739	5.48e-05	1	TTTTGTTGATTT
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	52	63	+	11.6739	5.48e-05	1	TTTTGTTGATTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	52	63	+	11.6739	5.48e-05	1	TTTTGTTGATTT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	21	36	-	10.6545	5.48e-05	0.039	CCACGCCCAGCCCCGT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	23	38	-	10.6545	5.48e-05	0.039	CCCCGCCCCCGGAGGA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	57	72	-	10.6545	5.48e-05	0.039	CCCCACCCCGGCATTT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	57	72	-	10.6545	5.48e-05	0.039	CCCCACCCCGGCATTT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	57	72	-	10.6545	5.48e-05	0.039	CCCCACCCCGGCATTT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	57	72	-	10.6545	5.48e-05	0.039	CCCCACCCCGGCATTT
EGR4	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	82	97	+	10.6545	5.48e-05	0.039	TCCCTCCCACACACCC
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	75	88	-	10.2143	5.48e-05	0.252	GTGGCACGTCGCCG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	75	88	-	10.2143	5.48e-05	0.252	GTGGCACGTCGCCG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	78	91	-	10.2143	5.48e-05	0.252	TTTCAACGTCATGA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	78	91	-	10.2143	5.48e-05	0.252	TTTCAACGTCATGA
CREB3	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	34	47	+	10.2143	5.48e-05	0.252	TTTCAACGTCATGA
SP2	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	19	33	+	10.8621	5.48e-05	0.0129	CTCCCGCTCCCCGCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	56	70	+	10.8621	5.48e-05	0.0129	GTCCCGCTCCATCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	60	74	+	10.8621	5.48e-05	0.0129	TCCCCTCCTTTCCTC
SP2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	67	81	+	10.8621	5.48e-05	0.0129	CCTCCTCCCTCCCTC
SP2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	34	48	-	10.8621	5.48e-05	0.0129	CCTCCTCCCTCCCTC
SP2	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	85	99	-	10.8621	5.48e-05	0.0129	CCACCGCCTCCTCTT
MAFF	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	82	99	-	11.2667	5.48e-05	0.965	AAATGGTCAGCATTATAA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	25	34	+	11.7759	5.48e-05	0.107	ACAGGATGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	38	47	+	11.7759	5.48e-05	0.107	ACAGGATGTG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	20	29	-	11.7759	5.48e-05	0.107	ACAGGATGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	88	97	-	11.7759	5.48e-05	0.107	ACAGGATGTG
EGR3	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	27	41	+	7.05172	5.48e-05	0.039	CCACGGCCCCGCCTC
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	16	33	+	11.2545	5.48e-05	0.952	TTTATCTTTTGCAAGCTG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	56	76	+	9.48387	5.48e-05	0.179	AGGGGTTTCCGCTTTCGGTTT
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	13	27	+	11.1622	5.48e-05	0.182	TTAGGGCAAGGTGTA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	13	27	+	11.1622	5.48e-05	0.182	TTAGGGCAAGGTGTA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	48	62	+	11.1622	5.48e-05	0.182	GAAGGTCACAGGTCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	48	62	+	11.1622	5.48e-05	0.182	GAAGGTCACAGGTCT
EHF	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	86	97	+	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
EHF	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	18	29	-	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	40	51	-	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	40	51	-	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	40	51	-	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	40	51	-	10.7213	5.48e-05	0.126	TTCCCGGAAGGG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	31	44	-	11.6538	5.48e-05	0.223	AGCCTGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	31	44	-	11.6538	5.48e-05	0.223	AGCCTGTGAGTCAC
SOX21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	85	99	-	2.28571	5.48e-05	1	AGCAATGTCAAGGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	14	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	14	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	26	35	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	26	35	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	55	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	55	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	55	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	66	+	11.6724	5.49e-05	0.126	GCCGGAAGGA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.6724	5.49e-05	0.126	GCCGGAAGCC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	43	55	-	10.7869	5.49e-05	0.0586	AGCCAGCGGGGCT
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	45	58	+	10.2692	5.49e-05	0.508	GAGGCCACGTGACC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	45	58	+	10.2692	5.49e-05	0.508	GAGGCCACGTGACC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	45	58	+	10.2692	5.49e-05	0.508	GAGGCCACGTGACC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	45	58	+	10.2692	5.49e-05	0.508	GAGGCCACGTGACC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	45	58	+	10.2692	5.49e-05	0.508	GAGGCCACGTGACC
SPIC	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	50	63	+	11.2113	5.49e-05	0.254	AAACAGGGGAAGCC
SPIC	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	52	65	-	11.2113	5.49e-05	0.254	AAACAGGGGAAGCC
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	1	10	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	4	13	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	4	13	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	4	13	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	4	13	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	6	15	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	6	15	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	8	17	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	1	10	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	10	19	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	10	19	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	10	19	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	4	13	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	4	13	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	4	13	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	4	13	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	13	22	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	6	15	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	6	15	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	8	17	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	10	19	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	10	19	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	10	19	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	22	31	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	22	31	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	13	22	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	28	37	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	28	37	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	29	38	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	22	31	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	22	31	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	34	43	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	34	43	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	34	43	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	34	43	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	34	43	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	28	37	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	28	37	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	29	38	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	40	49	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	43	52	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	43	52	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	34	43	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	34	43	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	34	43	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	34	43	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	34	43	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	43	52	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	43	52	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	48	57	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	40	49	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	43	52	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	43	52	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	43	52	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	43	52	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	48	57	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	58	67	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	61	70	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	61	70	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	61	70	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	61	70	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	66	75	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	58	67	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	61	70	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	61	70	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	61	70	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	61	70	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	66	75	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	77	86	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	84	93	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	77	86	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	93	102	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	84	93	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	96	105	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	96	105	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	98	107	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	100	109	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	100	109	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	100	109	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	100	109	+	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	93	102	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	105	114	+	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	96	105	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	96	105	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	98	107	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	100	109	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	100	109	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	100	109	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	100	109	-	10.0081	5.49e-05	0.0455	CGCGCGTGCG
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	105	114	-	10.0081	5.49e-05	0.0455	CGCACGCGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	42	53	-	11.5	5.49e-05	0.0866	AGCCCCAGGGAA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	42	53	-	11.5	5.49e-05	0.0866	AGCCCCAGGGAA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	42	53	-	11.5	5.49e-05	0.0866	AGCCCCAGGGAA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	42	53	-	11.5	5.49e-05	0.0866	AGCCCCAGGGAA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	61	72	-	11.5	5.49e-05	0.0866	CGCCCCCGGGAA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	61	72	-	11.5	5.49e-05	0.0866	CGCCCCCGGGAA
SCRT1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	45	59	+	7.96721	5.49e-05	0.795	CGGGAACAGGTGGGG
MEF2B	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	47	58	-	7.65455	5.49e-05	0.973	ACTATTTATAAC
SP3	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	84	94	-	11.3659	5.49e-05	0.0209	TCCCCGCCCAA
ETV2	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	14	-	11.0328	5.49e-05	0.161	CACAGGAAGTG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	15	25	-	11.0328	5.49e-05	0.161	GACAGGAAGCA
ETV2	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	26	36	+	11.0328	5.49e-05	0.161	CACAGGAAGTG
ETV2	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	28	38	+	11.0328	5.49e-05	0.161	CACAGGAAGTG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	36	46	+	11.0328	5.49e-05	0.161	GACAGGAAGCA
ETV2	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	87	-	11.0328	5.49e-05	0.161	CACAGGAAGTG
ETV2	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	89	-	11.0328	5.49e-05	0.161	CACAGGAAGTG
ETV2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	103	113	+	11.0328	5.49e-05	0.161	GACAGGAAGCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	40	51	-	11.1974	5.49e-05	0.0308	GACCCTCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	40	51	-	11.1974	5.49e-05	0.0308	GACCCTCCCCTT
SP8	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	64	75	+	11.1974	5.49e-05	0.0308	GACCCTCCCCTT
MLX	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	67	76	-	10.4714	5.49e-05	0.256	GTAACGTGAT
Foxo1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	73	83	-	11.9138	5.49e-05	0.902	GCTTGTTTTCC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	9	19	+	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	29	39	-	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	47	57	+	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	47	57	+	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	56	66	+	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	58	68	-	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	76	86	-	11.3279	5.49e-05	0.0597	GAGGAAGTGGG
GLIS1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	38	53	-	-8.19231	5.49e-05	0.329	CTTCCGCCCGCGGCGT
GLIS1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	62	77	+	-8.19231	5.49e-05	0.329	CTTCCGCCCGCGGCGT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	14	27	+	6.97872	5.49e-05	0.0995	GCACACCCACTGAG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	14	27	+	6.97872	5.49e-05	0.0995	GCACACCCACTGAG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	14	27	+	6.97872	5.49e-05	0.0995	GCACACCCACTGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	14	27	+	6.97872	5.49e-05	0.0995	GCACACCCACTGAG
BHLHE40	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	11.8462	5.49e-05	0.273	CCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	11.8462	5.49e-05	0.273	CCCACGTGAC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	11.8462	5.49e-05	0.273	CCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	11.8462	5.49e-05	0.273	CCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	11.8462	5.49e-05	0.273	CCCACGTGAC
RREB1	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	60	79	-	4.3945	5.49e-05	0.0586	ACACCACACACAGACATAGT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	36	55	+	4.3945	5.49e-05	0.0586	ACACCACACACAGACATAGT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	36	55	+	4.3945	5.49e-05	0.0586	ACACCACACACAGACATAGT
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	69	83	-	10.7273	5.49e-05	0.108	GCCCCGCGGGAACCC
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	92	106	-	10.7273	5.49e-05	0.108	GCCCCGCGGGAACCC
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	9	23	+	10.7273	5.49e-05	0.108	GCCCCGCGGGAACCC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	14	28	+	10.7273	5.49e-05	0.108	GCCTCGCGAGGCAGG
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	32	46	+	10.7273	5.49e-05	0.108	GCCCCGCGGGAACCC
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
ELK1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	10.7447	5.49e-05	0.0883	CCCGGAAGCA
Hes1	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	23	32	+	10.0909	5.49e-05	0.0976	GGCGCGCGTC
Hes1	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	33	42	-	10.0909	5.49e-05	0.0976	GGCGCGCGTC
Hes1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	47	56	+	10.0909	5.49e-05	0.0976	GGCGCGCGTC
Hes1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	59	68	-	10.0909	5.49e-05	0.0976	GGCGCGCGTC
Hes1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	70	79	+	10.0909	5.49e-05	0.0976	GGCGCGCGTC
Hes1	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	83	92	-	10.0909	5.49e-05	0.0976	GGCGCGCGTC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	10	27	+	5.36207	5.49e-05	0.278	TCGCCACGCCCTCCTCCT
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	25	42	+	5.36207	5.49e-05	0.278	TCGCCACGCCCTCCTCCT
KLF13	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	46	63	-	5.36207	5.49e-05	0.278	GGGAAACGCCTCCTCCGA
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	7	25	-	9.18033	5.49e-05	0.118	CTACCTCAAGGGAGAGGTA
CTCF	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	38	56	-	9.18033	5.49e-05	0.118	TTGACATCAGGAGGCGGCT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	59	77	+	9.18033	5.49e-05	0.118	TTGACATCAGGAGGCGGCT
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	59	77	+	9.18033	5.49e-05	0.118	TTGACATCAGGAGGCGGCT
Neurog1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	73	82	+	10.3846	5.49e-05	1	ACCGTATGTG
Klf12	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	43	57	+	8.86885	5.49e-05	0.0622	GACCACATCCCTCTC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	78	91	+	-1.43636	5.5e-05	0.732	TGGAAAACGAAAAC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	38	52	-	8.67143	5.5e-05	0.106	GCCCCCGCGCGGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	38	52	-	8.67143	5.5e-05	0.106	GCCCCCGCGCGGCGC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	+	11.5769	5.5e-05	0.0744	CGCCTCCGGCC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	11.5211	5.5e-05	0.135	TCCGGAAATG
ETV3	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	11.5211	5.5e-05	0.135	TCCGGAAATG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	11.5211	5.5e-05	0.135	TCCGGAAATG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	73	86	+	1.72727	5.5e-05	0.197	TGATGACGCCACGA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	73	86	+	1.72727	5.5e-05	0.197	TGATGACGCCACGA
Bcl6	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	30	43	-	11.1774	5.5e-05	0.412	CTGCCTGGAAGGAC
Bcl6	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	68	81	-	11.1774	5.5e-05	0.412	CTGCCTGGAAGGAC
Bcl6	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	72	85	+	11.1774	5.5e-05	0.412	CTGCCTGGAAGGAC
HES7	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	13	24	+	4.08621	5.5e-05	0.189	GGCCACGTGACA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	+	11.2	5.5e-05	0.205	TATGAGTCACA
HES5	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	93	104	+	3.51724	5.5e-05	0.298	AGGAACGTGCCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	19	31	-	10.6066	5.5e-05	0.0641	TCCCTCTGAGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	84	96	+	10.6066	5.5e-05	0.0641	TCCCTCTGAGGCC
Myb	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	84	93	+	12.0328	5.5e-05	0.905	ACAACTGCCT
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	100	113	-	6.17347	5.5e-05	0.365	TGGCTGCGTGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	5	18	+	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	5	18	+	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	5	18	+	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	5	18	+	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	3	16	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	3	16	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	3	16	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	3	16	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	3	16	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	99	112	+	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	97	110	-	11.2576	5.5e-05	0.0574	GGGGGCGGAGCCTC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	-	11.6463	5.5e-05	0.168	ATCATGTGAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	-	11.6463	5.5e-05	0.168	ATCATGTGAT
TFEC	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	-	11.6463	5.5e-05	0.168	GTCACGTGGG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	11.6463	5.5e-05	0.168	GTCACGTGCG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	+	11.6463	5.5e-05	0.168	ATCATGTGAT
TFEC	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	11.6463	5.5e-05	0.168	GTCACGTGCG
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	+	11.6463	5.5e-05	0.168	GTCACGTGGG
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	+	11.6463	5.5e-05	0.168	GTCACGTGGG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	+	11.6463	5.5e-05	0.168	GTCACGTGGG
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	+	11.6463	5.5e-05	0.168	GTCACGTGGG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	11	24	-	10.7115	5.5e-05	0.0223	CTCCTGCCCCCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	11	24	-	10.7115	5.5e-05	0.0223	CTCCTGCCCCCATC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	66	79	-	10.7115	5.5e-05	0.0223	GACCCGCCCTCTCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	30	43	+	10.7115	5.5e-05	0.0223	TCGCTGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	30	43	+	10.7115	5.5e-05	0.0223	TCGCTGCCGCCGCC
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	2	10	+	12.1685	5.5e-05	0.216	GCGACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	2	10	+	12.1685	5.5e-05	0.216	GCGACGTGA
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	69	77	+	12.1685	5.5e-05	0.216	GCGACGTGA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	78	86	+	12.1685	5.5e-05	0.216	GCGACGTGA
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	78	86	+	12.1685	5.5e-05	0.216	GCGACGTGA
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	43	54	+	11.4898	5.5e-05	0.0866	TCCCTCAGGGCC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	39	50	-	11.4898	5.5e-05	0.0866	TCCCTCAGGGCC
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	9	18	+	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	9	18	+	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	9	18	+	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	9	18	+	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	13	22	+	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	62	71	-	12.2714	5.5e-05	0.754	TCTTTGTCCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	62	71	-	12.2714	5.5e-05	0.754	TCTTTGTCCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	65	74	-	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	65	74	-	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	65	74	-	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	65	74	-	12.2714	5.5e-05	0.754	GCTTTGTTCC
Sox6	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	93	102	-	12.2714	5.5e-05	0.754	GCTTTGTTCC
FEV	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.8269	5.51e-05	0.133	CCCGGAAGTT
FEV	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.8269	5.51e-05	0.133	CCCGGAAGTT
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	87	97	+	11.8909	5.51e-05	0.721	GGGCACTCAAT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	9	29	-	10.0408	5.51e-05	0.0177	GGTGGTGTGGTGAGGAGGGAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	41	61	-	10.0408	5.51e-05	0.0177	AGAGGTGTGGTGGCGGGGAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	41	61	-	10.0408	5.51e-05	0.0177	GGAGGTGACGTGGGCGGAGCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	22	42	+	10.0408	5.51e-05	0.0177	GGGGAAGTGGGTGAAAGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	25	45	+	10.0408	5.51e-05	0.0177	GAGAGAAGGAGGAAGAAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	25	45	+	10.0408	5.51e-05	0.0177	GAGAGAAGGAGGAAGAAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	54	74	+	10.0408	5.51e-05	0.0177	AGAGGTGTGGTGGCGGGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	54	74	+	10.0408	5.51e-05	0.0177	AGAGGTGTGGTGGCGGGGAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	54	74	+	10.0408	5.51e-05	0.0177	AGAGGTGTGGTGGCGGGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	54	74	+	10.0408	5.51e-05	0.0177	AGAGGTGTGGTGGCGGGGAAA
MAX::MYC	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	12	22	+	10.949	5.51e-05	0.305	AGCCACGCGGC
MAX::MYC	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	93	103	-	10.949	5.51e-05	0.305	AGCCACGCGGC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	9	20	+	11.5818	5.51e-05	0.055	TCCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	7	18	-	11.5818	5.51e-05	0.055	TGCCTCAAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	7	18	-	11.5818	5.51e-05	0.055	TGCCTCAAGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	19	30	-	11.5818	5.51e-05	0.055	TCCCCCCAGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	85	96	+	11.5818	5.51e-05	0.055	TCCCCCCAGCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	43	52	-	10.7959	5.51e-05	0.22	TGGGGATTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	43	52	-	10.7959	5.51e-05	0.22	TGGGGATTCC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	87	99	+	10.4655	5.51e-05	0.0554	GGCCGGCGGGGCT
ETV2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	56	-	11	5.51e-05	0.161	GGCCGGAAATG
ETV2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	60	70	+	11	5.51e-05	0.161	GGCCGGAAATG
ETV2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	60	70	+	11	5.51e-05	0.161	GGCCGGAAATG
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	10	23	+	9.65574	5.51e-05	0.365	TTTCTCCAGGGACA
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	10	23	+	9.65574	5.51e-05	0.365	TTTCTCCAGGGACA
RREB1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	23	42	-	4.38532	5.51e-05	0.0586	ACCGCCCCCAGCCCACAACC
RREB1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	73	92	+	4.38532	5.51e-05	0.0586	ACCGCCCCCAGCCCACAACC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	45	55	-	11.6545	5.51e-05	0.0549	AGCCGCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	60	70	+	11.6545	5.51e-05	0.0549	AGCCGCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	60	70	+	11.6545	5.51e-05	0.0549	AGCCGCCGGCC
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	54	63	-	11.5319	5.51e-05	0.898	AGGTGTCAAT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	54	63	-	11.5319	5.51e-05	0.898	AGGTGTCAAT
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	54	63	-	11.5319	5.51e-05	0.898	AGGTGTCAAT
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	24	42	+	10.9032	5.51e-05	0.147	GAGCTCAGCTGGGTGGGAC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	24	42	+	10.9032	5.51e-05	0.147	GAGCTCAGCTGGGTGGGAC
PAX5	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	23	41	-	10.9032	5.51e-05	0.147	GAGCTCGGCCGTGCGTCAC
PAX5	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	74	92	+	10.9032	5.51e-05	0.147	GAGCTCGGCCGTGCGTCAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	61	79	-	10.9032	5.51e-05	0.147	GAAGGCAGCGGCGCGGGGG
EGR3	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	15	29	+	7.03448	5.51e-05	0.0391	GCCCGCCCCCCCCGA
EGR3	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	37	51	+	7.03448	5.51e-05	0.0391	TCTCTCCCCCGCGCT
EGR3	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	86	100	-	7.03448	5.51e-05	0.0391	GCCCGCCCCCCCCGA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	79	92	-	2.55319	5.51e-05	0.48	AGGGTTAAAGTCCG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	79	92	-	2.55319	5.51e-05	0.48	AGGGTTAAAGTCCG
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	79	92	-	2.55319	5.51e-05	0.48	AGGGTTAAAGTCCG
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	79	92	-	2.55319	5.51e-05	0.48	AGGGTTAAAGTCCG
EHF	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	59	70	+	10.7049	5.51e-05	0.126	CACCAGGAAGAA
EHF	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	90	101	+	10.7049	5.51e-05	0.126	CTCCCGGAAGCT
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	25	-	10.7049	5.51e-05	0.126	CTCCCGGAAGCT
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	25	-	10.7049	5.51e-05	0.126	CTCCCGGAAGCT
EHF	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	53	64	-	10.7049	5.51e-05	0.126	CACCAGGAAGAA
NRF1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	89	99	+	10.5818	5.51e-05	0.019	AAGCTTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	16	26	-	10.5818	5.51e-05	0.019	AAGCTTGCGCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	2	15	+	9.32759	5.51e-05	0.0337	GGCTCCGCCTACCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	70	83	+	9.32759	5.51e-05	0.0337	AGCCCCACCCACTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	70	83	+	9.32759	5.51e-05	0.0337	AGCCCCACCCACTG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	70	83	+	9.32759	5.51e-05	0.0337	AGCCCCACCCACTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	70	83	+	9.32759	5.51e-05	0.0337	AGCCCCACCCACTG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	62	75	-	9.32759	5.51e-05	0.0337	GGCCCCACCCATAT
Hoxd9	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	78	-	11.1528	5.51e-05	1	GTCATTAAAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	11.9697	5.51e-05	0.279	GCCACGTGAT
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	11.9697	5.51e-05	0.279	GCCACGTGAT
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	11.9697	5.51e-05	0.279	GCCACGTGAT
PLAG1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	29	42	-	6.2551	5.51e-05	0.0723	GGGGCCCGCGGCGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	71	84	-	6.2551	5.51e-05	0.0723	CGGGCCCGCGGGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	31	44	+	6.2551	5.51e-05	0.0723	CGGGCCCGCGGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	73	86	+	6.2551	5.51e-05	0.0723	GGGGCCCGCGGCGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	25	38	-	10.2	5.51e-05	0.252	TCAACACGTCAGCA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	25	38	-	10.2	5.51e-05	0.252	TCAACACGTCAGCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	85	98	-	10.2	5.51e-05	0.252	AAGCTACGTCATAA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	14	27	+	10.2	5.51e-05	0.252	AAGCTACGTCATAA
CREB3	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	77	90	+	10.2	5.51e-05	0.252	TCAACACGTCAGCA
TEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	39	50	+	11	5.52e-05	1	CATTACACAATC
TEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	39	50	+	11	5.52e-05	1	CATTACACAATC
TEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	29	40	-	11	5.52e-05	1	CATTACACAATC
TEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	29	40	-	11	5.52e-05	1	CATTACACAATC
Rarb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	44	59	-	-3.2931	5.52e-05	1	GGAGCTGAAGAGGCCA
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	44	60	+	3.88525	5.52e-05	0.563	GGGGAAGCGCGAGGTCA
TCF7L2	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	29	42	-	11.4909	5.52e-05	1	CCTCATGAAAGGGA
TCF7L2	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	73	86	+	11.4909	5.52e-05	1	CCTCATGAAAGGGA
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	11.5517	5.52e-05	0.112	GGCGGAAGTA
ELK3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	11.5517	5.52e-05	0.112	GGCGGAAGTA
ELK3	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	11.5517	5.52e-05	0.112	GACGGAAGTG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	11.5517	5.52e-05	0.112	GGCGGAAGTA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	11.5517	5.52e-05	0.112	GGCGGAAGTA
ELK3	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	11.5517	5.52e-05	0.112	GACGGAAGTG
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	31	51	-	5.68367	5.52e-05	0.219	ACGAGCAGCACGCCCAGCTCC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	31	51	-	5.68367	5.52e-05	0.219	ACGAGCAGCACGCCCAGCTCC
HINFP	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	26	37	+	11.1212	5.52e-05	0.109	GTCCGTCCGCTG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	53	64	+	11.1212	5.52e-05	0.109	GTCCGTCCGCTG
HINFP	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	43	54	-	11.1212	5.52e-05	0.109	GTCCGTCCGCTG
HINFP	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	61	72	+	11.1212	5.52e-05	0.109	GTCCGTCCGCTG
HINFP	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	78	89	-	11.1212	5.52e-05	0.109	GTCCGTCCGCTG
TBX19	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	55	74	-	9.69512	5.52e-05	1	ACTCACACCTAGTCGCCGAA
TBX19	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	55	74	-	9.69512	5.52e-05	1	ACTCACACCTAGTCGCCGAA
TBX19	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	55	74	-	9.69512	5.52e-05	1	ACTCACACCTAGTCGCCGAA
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	55	74	-	9.69512	5.52e-05	1	ACTCACACCTAGTCGCCGAA
TBX19	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	41	60	+	9.69512	5.52e-05	1	ACTCACACCTAGTCGCCGAA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	16	26	+	11.6531	5.52e-05	0.202	TGGTGACTAAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	82	92	-	11.6531	5.52e-05	0.202	TGGTGACTAAT
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	46	59	-	-1.45455	5.52e-05	0.732	GTTAAAGTGAAAGC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	46	59	-	-1.45455	5.52e-05	0.732	GTTAAAGTGAAAGC
IRF8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	80	93	-	-1.45455	5.52e-05	0.732	CTGAAAATGAACGC
IRF8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	80	93	-	-1.45455	5.52e-05	0.732	CTGAAAATGAACGC
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	20	+	8.6422	5.52e-05	0.848	AGGCAGCTGACA
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	20	+	8.6422	5.52e-05	0.848	AGGCAGCTGACA
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	62	75	+	9.19355	5.52e-05	0.731	CATAAAGTGAAATA
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	62	75	+	9.19355	5.52e-05	0.731	CATAAAGTGAAATA
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	51	64	-	9.19355	5.52e-05	0.731	CATAAAGTGAAATA
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	51	64	-	9.19355	5.52e-05	0.731	CATAAAGTGAAATA
YY2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	89	99	-	11.5758	5.52e-05	0.326	CCTCGCCATTT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	10	20	-	11.0638	5.52e-05	0.209	GCTGAGTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	10	20	-	11.0638	5.52e-05	0.209	GCTGAGTCAGC
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	71	81	-	11.4082	5.52e-05	0.289	GTGCTGGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	71	81	-	11.4082	5.52e-05	0.289	GTGCTGGGAAC
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	8	19	-	11.47	5.52e-05	1	TTTATGCAAAAA
DMRT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	57	67	-	11.7377	5.52e-05	1	ATTGTATCAGG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	-	11.4796	5.52e-05	0.0866	TGCCTGGGGGGG
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	68	79	+	11.5455	5.52e-05	0.0893	TGGCCCCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	-	11.5455	5.52e-05	0.0893	CGCCCGGCGGCG
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	47	-	11.5455	5.52e-05	0.0893	TGGCCCCGGGCT
E2F1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	30	41	+	11.3607	5.52e-05	0.41	CGTGGCGCCATG
E2F1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	74	85	-	11.3607	5.52e-05	0.41	CGTGGCGCCATG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	21	31	+	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	21	31	+	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	89	99	+	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	101	111	+	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	101	111	+	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	4	14	-	10.5636	5.52e-05	0.019	GCGGTGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	6	16	-	10.5636	5.52e-05	0.019	GCGGTGGCGCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	36	47	-	11.2429	5.52e-05	0.217	GCCACCCACCGC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	36	47	-	11.2429	5.52e-05	0.217	GCCACCCACCGC
ZBTB7A	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	68	79	+	11.2429	5.52e-05	0.217	GCCACCCACCGC
NFKB1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	15	27	-	2.97959	5.52e-05	0.253	CGGGAAAGCACCG
NFKB1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	88	100	+	2.97959	5.52e-05	0.253	CGGGAAAGCACCG
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	20	33	+	3.65455	5.52e-05	0.193	CTAAACAGGAAGCT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	20	33	+	3.65455	5.52e-05	0.193	CTAAACAGGAAGCT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	37	50	+	3.65455	5.52e-05	0.193	GGGAAGAGGAACTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	37	50	+	3.65455	5.52e-05	0.193	GGGAAGAGGAACTT
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	56	69	-	3.65455	5.52e-05	0.193	GGGAAGAGGAACTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	56	69	-	3.65455	5.52e-05	0.193	GGGAAGAGGAACTT
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	13	24	+	11.5889	5.52e-05	1	GAATGCAATGAC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	13	24	+	11.5889	5.52e-05	1	GAATGCAATGAC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	13	24	+	11.5889	5.52e-05	1	GAATGCAATGAC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	13	24	+	11.5889	5.52e-05	1	GAATGCAATGAC
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	6	16	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	6	16	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	6	16	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	6	16	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	4	14	-	9.94828	5.52e-05	0.0818	ACACCCACGGA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	40	50	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	40	50	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	40	50	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	40	50	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	38	48	-	9.94828	5.52e-05	0.0818	CGGCCCCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	62	72	+	9.94828	5.52e-05	0.0818	CGGCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	62	72	+	9.94828	5.52e-05	0.0818	CGGCCCCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	62	72	+	9.94828	5.52e-05	0.0818	CGGCCCCCGCA
EGR2	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	78	88	+	9.94828	5.52e-05	0.0818	ACACACACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	101	111	+	9.94828	5.52e-05	0.0818	ACACCCACGGA
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	101	111	+	9.94828	5.52e-05	0.0818	ACACCCACGGA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	96	106	-	9.94828	5.52e-05	0.0818	GCGCCCACACG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	96	106	-	9.94828	5.52e-05	0.0818	GCGCCCACACG
Hand1::Tcf3	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	55	64	+	11.618	5.52e-05	0.93	CGTCTGGAAA
GLIS2	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	68	81	-	8.72131	5.52e-05	0.185	CGCCCCCCGCACAT
GLIS2	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	34	47	+	8.72131	5.52e-05	0.185	CGCCCCCCGCACAT
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	96	106	+	11.75	5.52e-05	0.383	TGTCTGAGTCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	15	25	-	11.3462	5.52e-05	0.0147	CTCCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	15	25	-	11.3462	5.52e-05	0.0147	CTCCCGCCTTC
SP1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	51	61	+	11.3462	5.52e-05	0.0147	TCCCCACCCAT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	42	54	+	10.7705	5.52e-05	0.0586	AGCCCTGCTGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	42	54	+	10.7705	5.52e-05	0.0586	AGCCCTGCTGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	42	54	+	10.7705	5.52e-05	0.0586	AGCCCTGCTGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	101	113	-	10.7705	5.52e-05	0.0586	TCCCGCCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	101	113	-	10.7705	5.52e-05	0.0586	TCCCGCCCGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	101	113	-	10.7705	5.52e-05	0.0586	TCCCGCCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	101	113	-	10.7705	5.52e-05	0.0586	TCCCGCCCGGGCC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	63	+	11.4909	5.53e-05	0.0702	CGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	16	26	-	11.4909	5.53e-05	0.0702	CGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	16	26	-	11.4909	5.53e-05	0.0702	CGCCCCGGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	100	110	-	11.4909	5.53e-05	0.0702	AGCCCGCGGCC
SP2	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	33	47	+	10.8448	5.53e-05	0.0129	CGCCCGCCTAGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	60	74	+	10.8448	5.53e-05	0.0129	TCCCTTCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	60	74	+	10.8448	5.53e-05	0.0129	TCCCTTCCCCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	18	32	-	10.8448	5.53e-05	0.0129	ACCCCTCCTACTACC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	31	45	-	10.8448	5.53e-05	0.0129	CCCCCGCCCAGCAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	31	45	-	10.8448	5.53e-05	0.0129	CCCCCGCCCAGCAGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	38	52	-	10.8448	5.53e-05	0.0129	AGCCCTCCTCCTTGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	38	52	-	10.8448	5.53e-05	0.0129	AGCCCTCCTCCTTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	67	81	-	10.8448	5.53e-05	0.0129	GCACCACCCACCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	67	81	-	10.8448	5.53e-05	0.0129	GCACCACCCACCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	67	81	-	10.8448	5.53e-05	0.0129	GCACCACCCACCGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	68	82	-	10.8448	5.53e-05	0.0129	CGCCCGCCTAGCGCC
HNF4G	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	46	60	+	11.1154	5.53e-05	0.335	CGAGCTCAGAGTCCG
HNF4G	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	55	69	-	11.1154	5.53e-05	0.335	CGAGCTCAGAGTCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	70	84	+	11.1154	5.53e-05	0.335	CAGGCGCAGAGTCCC
Klf4	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	14	23	+	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	33	42	+	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	33	42	+	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	51	-	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	51	-	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	90	99	-	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	90	99	-	11.1939	5.53e-05	0.0211	AGGGCGGGAC
Klf4	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	92	101	-	11.1939	5.53e-05	0.0211	AGGGCGGGAC
XBP1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	46	59	+	10.25	5.53e-05	0.508	GAAGCTACGTCATT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	66	77	+	4.06897	5.53e-05	0.189	GGTCACGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	66	77	+	4.06897	5.53e-05	0.189	GGTCACGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	86	97	+	4.06897	5.53e-05	0.189	GGTCACGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	86	97	+	4.06897	5.53e-05	0.189	GGTCACGTGCCC
FLI1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	11.5106	5.53e-05	0.12	ACCGGAAAGA
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	11.5106	5.53e-05	0.12	ACCGGAAAGA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	11.5106	5.53e-05	0.12	ACCGGAAAGA
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	11.5106	5.53e-05	0.12	ACCGGAAAGA
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	11.5106	5.53e-05	0.12	ACCGGAAAGA
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	-	11.7885	5.53e-05	0.805	ATTACGCAAG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	25	39	-	8.85246	5.53e-05	0.0623	AGCCCCGCCCCTGGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	25	39	-	8.85246	5.53e-05	0.0623	AGCCCCGCCCCTGGC
Klf12	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	76	90	+	8.85246	5.53e-05	0.0623	AGCCCCGCCCCTGGC
HOXC12	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	76	86	+	11.2545	5.53e-05	1	TGTCGTAAAGC
HOXC12	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	29	39	-	11.2545	5.53e-05	1	TGTCGTAAAGC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	11.7115	5.53e-05	0.102	GACGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	11.7115	5.53e-05	0.102	GACGGAAGTG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	45	58	-	6.2449	5.53e-05	0.0723	GGCGGGCACAGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	45	58	-	6.2449	5.53e-05	0.0723	GGCGGGCACAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	45	58	-	6.2449	5.53e-05	0.0723	GGCGGGCACAGGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	80	93	-	6.2449	5.53e-05	0.0723	GAGGGTGAGTGGGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	4	17	+	6.2449	5.53e-05	0.0723	GAGGCGGGCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	30	+	6.2449	5.53e-05	0.0723	GGGGGCGGGGGGGA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	22	35	+	6.2449	5.53e-05	0.0723	GAGGGTGAGTGGGA
ETS1	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	11.7414	5.53e-05	0.107	GCCGGATGCG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	11.7414	5.53e-05	0.107	GCCGGATGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	9	27	+	9.16393	5.53e-05	0.118	CCGCCAGCTAGGGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	9	27	+	9.16393	5.53e-05	0.118	CCGCCAGCTAGGGGCGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	42	60	+	9.16393	5.53e-05	0.118	CCGCCAGCTAGGGGCGCGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	42	60	+	9.16393	5.53e-05	0.118	CCGCCAGCTAGGGGCGCGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	109	+	10.4483	5.53e-05	0.0554	CGCCGCCGGGGGT
ZIC1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	27	40	+	6.95745	5.53e-05	0.0995	CCCCTCCTGCCGGG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	86	99	+	6.95745	5.53e-05	0.0995	TGCAACCCGCTGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	86	99	+	6.95745	5.53e-05	0.0995	TGCAACCCGCTGCC
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	+	11.5577	5.53e-05	0.0744	CGCCTGCGGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	13	28	+	10.6364	5.53e-05	0.039	CCCCGCCCACCGCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	13	28	+	10.6364	5.53e-05	0.039	CCCCGCCCACCGCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	13	28	+	10.6364	5.53e-05	0.039	CCCCGCCCACCGCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	13	28	+	10.6364	5.53e-05	0.039	CCCCGCCCACCGCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	14	29	+	10.6364	5.53e-05	0.039	GCACGCACGCGCACAC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	10	25	-	10.6364	5.53e-05	0.039	CTCCGCCCCAGCACCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	10	25	-	10.6364	5.53e-05	0.039	CTCCGCCCCAGCACCC
EGR4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	12	27	-	10.6364	5.53e-05	0.039	TTCCGCCCCCGGCCGC
EGR4	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	63	78	+	10.6364	5.53e-05	0.039	CGCCGCCGCCGCGCTT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	54	69	-	10.6364	5.53e-05	0.039	TCCCAGCCACGCACTA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	54	69	-	10.6364	5.53e-05	0.039	TCCCAGCCACGCACTA
EGR4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	88	103	+	10.6364	5.53e-05	0.039	TTCCGCCCCCGGCCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	59	73	-	10.7121	5.53e-05	0.108	TCCTCGCGCCAGCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	59	73	-	10.7121	5.53e-05	0.108	TCCTCGCGCCAGCGG
ZBTB33	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	42	56	+	10.7121	5.53e-05	0.108	TCCTCGCGCCAGCGG
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	20	33	+	6.84146	5.53e-05	0.5	TGTGCAGGCGCCGC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	20	33	+	6.84146	5.53e-05	0.5	TGTGCAGGCGCCGC
SP8	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	16	+	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	17	28	-	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	17	28	-	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	40	+	11.1842	5.54e-05	0.0308	GCCCCGCCTCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	40	+	11.1842	5.54e-05	0.0308	GCCCCGCCTCTT
SP8	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	62	+	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	99	110	-	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	99	110	-	11.1842	5.54e-05	0.0308	GCCCCTCCTCCT
HSF4	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	4	16	-	11.0976	5.54e-05	1	GGCTGGAAGCTTC
HSF4	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	7	19	-	11.0976	5.54e-05	1	TTCTAGTGCGTTC
HSF4	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	92	104	+	11.0976	5.54e-05	1	TTCTAGTGCGTTC
HSF4	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	99	111	+	11.0976	5.54e-05	1	GGCTGGAAGCTTC
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	87	103	+	0.606061	5.54e-05	0.514	CCGGTCACCGTGACAAT
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	5	16	+	9.58182	5.54e-05	0.115	AACAAGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	5	16	+	9.58182	5.54e-05	0.115	AACAAGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	47	58	-	9.58182	5.54e-05	0.115	CTCCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	47	58	-	9.58182	5.54e-05	0.115	CTCCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	47	58	-	9.58182	5.54e-05	0.115	CTCCCGGAAACG
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	47	58	-	9.58182	5.54e-05	0.115	CTCCCGGAAACG
BATF3	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	79	92	-	1.69697	5.54e-05	0.198	TGATGGCGTCACTG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	25	39	-	10.2121	5.54e-05	0.308	CAACGTGACTTATCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	25	39	-	10.2121	5.54e-05	0.308	CAACGTGACTTATCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	25	39	-	10.2121	5.54e-05	0.308	CAACGTGACTTATCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	25	39	-	10.2121	5.54e-05	0.308	CAACGTGACTTATCA
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	76	90	+	10.2121	5.54e-05	0.308	CAACGTGACTTATCA
SPIC	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	6	19	+	11.1972	5.54e-05	0.254	GGAAAGGGAAAGAA
RREB1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	21	40	-	4.36697	5.54e-05	0.0586	CCCACCCCCACCAGCACGCG
RREB1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	94	113	-	4.36697	5.54e-05	0.0586	CCCACCCCCACCAGCACGCG
RREB1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	2	21	+	4.36697	5.54e-05	0.0586	CCCACCCCCACCAGCACGCG
RREB1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	75	94	+	4.36697	5.54e-05	0.0586	CCCACCCCCACCAGCACGCG
RXRG	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	10	23	+	2.53191	5.54e-05	0.48	TGGTTCAGGGGTTG
SP4	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	66	82	+	4.54545	5.54e-05	0.0277	GCGGCCCCGCGCACAGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	59	75	-	4.54545	5.54e-05	0.0277	GAAGTCCCGCCCCAGTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	59	75	-	4.54545	5.54e-05	0.0277	GAAGTCCCGCCCCAGTC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	73	87	+	7.01724	5.54e-05	0.0392	GCCCGCCCTCCCATT
HEY2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	13	22	+	11.2241	5.54e-05	0.199	GGCGCGTGCA
NRL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	42	52	+	11.0192	5.54e-05	0.823	GCTGTGCTGAC
NRL	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	63	73	-	11.0192	5.54e-05	0.823	GCTGTGCTGAC
SP3	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	102	112	+	11.3577	5.54e-05	0.0211	CGCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	3	13	-	11.3577	5.54e-05	0.0211	CGCACGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	3	13	-	11.3577	5.54e-05	0.0211	CGCACGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	3	13	-	11.3577	5.54e-05	0.0211	CGCACGCCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	3	13	-	11.3577	5.54e-05	0.0211	CGCACGCCCCT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	3	15	+	10.5902	5.54e-05	0.0641	GGCCCGCGAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	-	10.5902	5.54e-05	0.0641	TCCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	-	10.5902	5.54e-05	0.0641	TCCCCCAGCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	-	10.5902	5.54e-05	0.0641	AGCCCGGGAGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	-	10.5902	5.54e-05	0.0641	AGCCCGGGAGGGG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	+	10.5902	5.54e-05	0.0641	TCCCCTAGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	-	10.5902	5.54e-05	0.0641	TCCCCAAAAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	101	113	-	10.5902	5.54e-05	0.0641	AGCCGCCGGGGCC
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	49	58	+	10.0839	5.54e-05	0.0976	TGCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	49	58	+	10.0839	5.54e-05	0.0976	TGCACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	49	58	+	10.0839	5.54e-05	0.0976	TGCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	49	58	+	10.0839	5.54e-05	0.0976	TGCACGCGCG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	54	67	-	11.2424	5.54e-05	0.0575	GACCTCGCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	54	67	-	11.2424	5.54e-05	0.0575	GACCTCGCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	54	67	-	11.2424	5.54e-05	0.0575	GACCTCGCGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	54	67	-	11.2424	5.54e-05	0.0575	GACCTCGCGGCCTG
ELK4	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	9	19	-	11.6545	5.54e-05	0.0617	CCGCTTCCTCC
EBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	47	60	+	9.63934	5.54e-05	0.365	ACCCTCCAGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	47	60	+	9.63934	5.54e-05	0.365	ACCCTCCAGGGAAC
GCM2	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	5	14	+	11.541	5.55e-05	0.718	TATGCGGGAA
GCM2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	7	16	-	11.541	5.55e-05	0.718	TATGCGGGAA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	23	37	+	11.1441	5.55e-05	0.182	CGAGGGCAGAGGCGG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	78	92	-	11.1441	5.55e-05	0.182	CGAGGGCAGAGGCGG
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	78	92	-	11.1441	5.55e-05	0.182	CGAGGGCAGAGGCGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	78	92	-	11.1441	5.55e-05	0.182	CGAGGGCAGAGGCGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	78	92	-	11.1441	5.55e-05	0.182	CGAGGGCAGAGGCGG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	9	23	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	9	23	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	9	23	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	9	23	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	15	29	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	15	29	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	15	29	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	15	29	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	15	29	+	11.0962	5.55e-05	0.162	ATAAAGTCCAATCAG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	22	35	-	10.1857	5.55e-05	0.252	TCTACACGTGATCA
ONECUT3	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	41	54	+	9.95506	5.55e-05	1	AAATAATAAATAAA
ONECUT3	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	61	74	-	9.95506	5.55e-05	1	AAATAATAAATAAA
KLF16	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	102	112	+	10.8966	5.55e-05	0.0201	CGCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	3	13	-	10.8966	5.55e-05	0.0201	CGCACGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	3	13	-	10.8966	5.55e-05	0.0201	CGCACGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	3	13	-	10.8966	5.55e-05	0.0201	CGCACGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	3	13	-	10.8966	5.55e-05	0.0201	CGCACGCCCCT
PBX1	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	22	33	+	11.1735	5.55e-05	1	TCCTCAATCATG
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	42	60	-	10.9677	5.55e-05	0.674	TGCCCCTCGGTTCCCCACT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	47	60	+	6.23469	5.55e-05	0.0723	GGGCCTATCAGGGG
Srebf1(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	10.4483	5.55e-05	0.249	GTCACGTGCT
Srebf1(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	10.4483	5.55e-05	0.249	GTCACGTGCT
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	3	13	+	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	24	34	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	24	34	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	24	34	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	26	36	+	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	42	52	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	46	56	+	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	58	68	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	62	72	+	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	102	112	+	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	17	27	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	17	27	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	43	53	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	47	57	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	47	57	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	47	57	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	47	57	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	50	60	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	50	60	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	59	69	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	63	73	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	79	89	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	81	91	-	10.5455	5.55e-05	0.019	ACGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	85	95	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	85	95	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	85	95	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	85	95	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	102	112	-	10.5455	5.55e-05	0.019	GCGCGCGCCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	5	18	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	20	33	+	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	20	33	+	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	20	33	+	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	20	33	+	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	19	32	-	9.31034	5.55e-05	0.0337	CGTTCCGCCCACTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	19	32	-	9.31034	5.55e-05	0.0337	CGTTCCGCCCACTG
KLF14	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	19	32	-	9.31034	5.55e-05	0.0337	CACCCCGCCCTCCC
KLF14	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	83	96	+	9.31034	5.55e-05	0.0337	CACCCCGCCCTCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	82	95	-	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	97	110	+	9.31034	5.55e-05	0.0337	GGCTCCGCCTCCTG
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	36	47	-	11.2286	5.55e-05	0.217	CCGGACCACCCA
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	59	70	+	11.2286	5.55e-05	0.217	CCGGACCACCCA
HINFP	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	22	33	+	11.1061	5.55e-05	0.109	GCGCCTCCGCGG
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	94	106	-	11.1639	5.55e-05	0.359	GTGGCTCTCACAC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	6	18	+	11.1639	5.55e-05	0.359	ATGGCTCCCAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	9	21	+	11.1639	5.55e-05	0.359	GTGGCTCTCACAC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	9	21	+	11.1639	5.55e-05	0.359	GTGGCTCTCACAC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	9	21	+	11.1639	5.55e-05	0.359	GTGGCTCTCACAC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	9	21	+	11.1639	5.55e-05	0.359	GTGGCTCTCACAC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	56	76	+	9.45161	5.56e-05	0.18	TTTTTTTTTTTGTTTTTTTTT
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	50	62	+	10.1714	5.56e-05	0.729	ATAACAGATGTGA
ZBTB18	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	91	103	+	10.1714	5.56e-05	0.729	ATAACAGATGTGA
ZBTB18	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	12	24	-	10.1714	5.56e-05	0.729	ATAACAGATGTGA
ZBTB18	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	53	65	-	10.1714	5.56e-05	0.729	ATAACAGATGTGA
ZBTB18	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	93	105	-	10.1714	5.56e-05	0.729	AACCCAGTTGTGT
ZBTB18	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	93	105	-	10.1714	5.56e-05	0.729	AACCCAGTTGTGT
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	42	58	+	10.2143	5.56e-05	0.368	GGGGGAGAAGAAGGGCA
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr15:60547657..60547771,-__2056.1.0.0	25	34	-	10.2273	5.56e-05	1	AACATAAGTC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	8	20	+	10.7541	5.56e-05	0.0586	GGCCGCCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	8	20	+	10.7541	5.56e-05	0.0586	GGCCGCCAGGGGG
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	34	46	+	10.7541	5.56e-05	0.0586	GCCCGCGGGGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	39	51	-	10.7541	5.56e-05	0.0586	GCCCGCGGGGGCG
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	69	81	-	10.7541	5.56e-05	0.0586	GCCCGCGGGGGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	9	22	-	10.6923	5.56e-05	0.0224	TCTTCGCCTCCTCC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	14	27	-	10.6923	5.56e-05	0.0224	GCTCCGCCTTCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	15	28	-	10.6923	5.56e-05	0.0224	TGGCCGCTCCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	68	81	-	10.6923	5.56e-05	0.0224	GCTCCGCCTTCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	68	81	-	10.6923	5.56e-05	0.0224	GCTCCGCCTTCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	81	94	-	10.6923	5.56e-05	0.0224	ACGCCGCCTCCTTC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	81	94	-	10.6923	5.56e-05	0.0224	ACGCCGCCTCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	81	94	-	10.6923	5.56e-05	0.0224	ACGCCGCCTCCTTC
EGR1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	66	79	+	10.6923	5.56e-05	0.0224	GCTCCGCCTTCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	80	93	+	10.6923	5.56e-05	0.0224	CTCTCGCCGCCGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	38	51	-	8.70492	5.56e-05	0.185	TCCCCCACACTGAG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	38	51	-	8.70492	5.56e-05	0.185	TCCCCCACACTGAG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	38	51	-	8.70492	5.56e-05	0.185	TCCCCCACACTGAG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	38	51	-	8.70492	5.56e-05	0.185	TCCCCCACACTGAG
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	34	45	-	11.0192	5.56e-05	0.264	AAAGATGGCTTT
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	34	45	-	11.0192	5.56e-05	0.264	AAAGATGGCTTT
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	34	45	-	11.0192	5.56e-05	0.264	AAAGATGGCTTT
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	34	45	-	11.0192	5.56e-05	0.264	AAAGATGGCTTT
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	34	45	-	11.0192	5.56e-05	0.264	AAAGATGGCTTT
YY1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	70	81	+	11.0192	5.56e-05	0.264	AAAGATGGCTTT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	80	+	10.431	5.56e-05	0.0554	GGCCGGGGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	80	+	10.431	5.56e-05	0.0554	GGCCGGGGGGGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	11.6379	5.56e-05	0.126	GGCGGAAGTA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	11.6379	5.56e-05	0.126	GGCGGAAGTA
ETV4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	11.6379	5.56e-05	0.126	GGCGGAAGTA
ETV4	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	11.6379	5.56e-05	0.126	GGCGGAAGTA
PAX5	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	10	28	+	10.8871	5.56e-05	0.147	AAGTGAAGTAAAGCAGGAA
PAX5	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	13	31	-	10.8871	5.56e-05	0.147	AAGTGAAGTAAAGCAGGAA
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	56	74	-	10.8871	5.56e-05	0.147	GGAAGCAGCAGCGCGGGCC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	56	74	-	10.8871	5.56e-05	0.147	GGAAGCAGCAGCGCGGGCC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	56	74	-	10.8871	5.56e-05	0.147	GGAAGCAGCAGCGCGGGCC
IRF8	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	86	99	-	-1.49091	5.56e-05	0.732	TCCAAAGTGAAAGT
EVX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.42	5.56e-05	1	GCCAATTAGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	4	24	-	10.0204	5.56e-05	0.0177	AGAACAGCGGCGGGAGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	4	24	-	10.0204	5.56e-05	0.0177	AGAACAGCGGCGGGAGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	44	64	-	10.0204	5.56e-05	0.0177	CGGGGCCGGAGAGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	44	64	-	10.0204	5.56e-05	0.0177	CGGGGCCGGAGAGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	52	72	-	10.0204	5.56e-05	0.0177	GGGAGAGCAGGGAGGGGGATC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	52	72	-	10.0204	5.56e-05	0.0177	GGGAGAGCAGGGAGGGGGATC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	55	75	-	10.0204	5.56e-05	0.0177	GAGGGAGGCCTGGTTAGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	55	75	-	10.0204	5.56e-05	0.0177	GAGGGAGGCCTGGTTAGGGGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	57	77	-	10.0204	5.56e-05	0.0177	GGAAGGGGAAGGGGAAGGGCA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	58	78	-	10.0204	5.56e-05	0.0177	AAGGCAGCGGCACGGGGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	59	79	-	10.0204	5.56e-05	0.0177	GAAGGCAGCGGCACGGGGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	71	91	-	10.0204	5.56e-05	0.0177	TGTGCTGGGGAAGGAGGAGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	72	92	-	10.0204	5.56e-05	0.0177	GAGGGAGGGGCACAGGGGGCT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	72	92	-	10.0204	5.56e-05	0.0177	CAGGGAGGTGGGCGGAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	72	92	-	10.0204	5.56e-05	0.0177	CAGGGAGGTGGGCGGAGGGAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	76	96	-	10.0204	5.56e-05	0.0177	TGTGCTGGGGAAGGAGGAGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	78	98	-	10.0204	5.56e-05	0.0177	GGGGGCGCGGCGGCGAGAGGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	87	107	-	10.0204	5.56e-05	0.0177	GGGGGGAAAAGGGGAGGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	6	26	+	10.0204	5.56e-05	0.0177	CAGGGAGGTGGGCGGAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	6	26	+	10.0204	5.56e-05	0.0177	CAGGGAGGTGGGCGGAGGGAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	8	28	+	10.0204	5.56e-05	0.0177	GGGGGGAAAAGGGGAGGTGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	9	29	+	10.0204	5.56e-05	0.0177	GGGAGAGACGGCGGGTGGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	19	39	+	10.0204	5.56e-05	0.0177	TGTGCTGGGGAAGGAGGAGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	23	43	+	10.0204	5.56e-05	0.0177	CAGGGAGGTGGGCGGAGGGAA
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	23	43	+	10.0204	5.56e-05	0.0177	GAGGGAGGGGCACAGGGGGCT
ZNF263	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	24	44	+	10.0204	5.56e-05	0.0177	TGTGCTGGGGAAGGAGGAGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	34	54	+	10.0204	5.56e-05	0.0177	CGGGGCCGGAGAGGAGAGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	34	54	+	10.0204	5.56e-05	0.0177	CGGGGCCGGAGAGGAGAGAGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	38	58	+	10.0204	5.56e-05	0.0177	GGAAGGGGAAGGGGAAGGGCA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	51	71	+	10.0204	5.56e-05	0.0177	CGGGGCCGGAGAGGAGAGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	91	111	+	10.0204	5.56e-05	0.0177	AGAACAGCGGCGGGAGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	97	107	-	11.3793	5.56e-05	0.0475	TGGCGGGGAAG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	97	107	-	11.3793	5.56e-05	0.0475	TGGCGGGGAAG
ATF4	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	21	33	+	10.2295	5.56e-05	0.575	AGATGACGCCAGA
ATF4	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	82	94	-	10.2295	5.56e-05	0.575	AGATGACGCCAGA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	26	40	+	11.4085	5.56e-05	0.341	GCCTGGTAAACAGAA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	24	38	+	8.83607	5.56e-05	0.0623	CACCCCGCCCTCAGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	24	38	+	8.83607	5.56e-05	0.0623	CACCCCGCCCTCAGG
Klf12	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	42	56	+	8.83607	5.56e-05	0.0623	TCCCACGCCCCGCCC
Klf12	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	65	79	+	8.83607	5.56e-05	0.0623	CACCCCGCCCTCAGG
Klf12	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	59	73	-	8.83607	5.56e-05	0.0623	TCCCACGCCCCGCCC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	12.2623	5.57e-05	0.333	GCCACGTGCT
Npas2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	12.2623	5.57e-05	0.333	CGCACGTGCA
Npas2	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	12.2623	5.57e-05	0.333	GCCACGTGCT
Npas2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	12.2623	5.57e-05	0.333	GCCACGTGCT
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	12.2623	5.57e-05	0.333	GCCACGTGCT
Npas2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	12.2623	5.57e-05	0.333	CGCACGTGCA
NR3C1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	+	5.91837	5.57e-05	1	GTGTACTGGATGTTCTC
NR3C1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	+	5.91837	5.57e-05	1	GTGTACTGGATGTTCTC
NR3C1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	+	5.91837	5.57e-05	1	GTGTACTGGATGTTCTC
Tcf12	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	24	34	-	12.2245	5.57e-05	0.18	CGCAGCTGCGA
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	6	17	-	4.03448	5.57e-05	0.189	CGGCGCGGGCCG
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	6	17	-	4.03448	5.57e-05	0.189	CGGCGCGGGCCG
Foxo1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	37	47	-	11.8966	5.57e-05	0.902	GCCTGTTTCCT
ETV5	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.4182	5.57e-05	0.11	AACGGAAGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.4182	5.57e-05	0.11	AACGGAAGTA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.4182	5.57e-05	0.11	AACGGAAGTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	57	71	-	9.82857	5.57e-05	0.122	TGGGGGCGGGGTGCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	28	44	+	4.52727	5.57e-05	0.0277	AACGCCCCGCACCCGCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	28	44	+	4.52727	5.57e-05	0.0277	AACGCCCCGCACCCGCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	28	44	+	4.52727	5.57e-05	0.0277	AACGCCCCGCACCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	28	44	+	4.52727	5.57e-05	0.0277	AACGCCCCGCACCCGCC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	82	92	-	6.30612	5.57e-05	0.309	CATGAGTCGTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	34	48	+	10.7273	5.57e-05	0.109	CCCCGCCCGCAGGGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	34	48	+	10.7273	5.57e-05	0.109	CCCCGCCCGCAGGGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	37	51	+	10.7273	5.57e-05	0.109	GCATCCCCGCAGTGA
ZIC4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	68	+	10.7273	5.57e-05	0.109	GGCCCCCCTGGGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	61	-	10.7273	5.57e-05	0.109	GGCCCCCCTGGGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	61	-	10.7273	5.57e-05	0.109	GGCCCCCCTGGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	61	-	10.7273	5.57e-05	0.109	GGCCCCCCTGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	68	80	+	10.5738	5.57e-05	0.0641	TCCCTGGCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	68	80	+	10.5738	5.57e-05	0.0641	TCCCTGGCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	68	80	+	10.5738	5.57e-05	0.0641	TCCCTGGCAGGCA
TBX2	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	56	66	+	11.4	5.57e-05	1	CAGGTGTGAGT
MEF2D	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	70	81	-	7.32727	5.57e-05	0.97	CCCAAAAATAGA
MEF2D	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	70	81	-	7.32727	5.57e-05	0.97	CCCAAAAATAGA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr14:56263371..56263485,-__292.1.0.0	82	95	-	6.14286	5.57e-05	0.365	TGGCAGAAGGCAAG
ZIC1	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	30	43	-	6.93617	5.57e-05	0.0995	GGAGCCCCGCAGTG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	57	70	+	6.93617	5.57e-05	0.0995	CCCATCCCGCTGGG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	72	85	+	6.93617	5.57e-05	0.0995	GGAGCCCCGCAGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	72	85	+	6.93617	5.57e-05	0.0995	GGAGCCCCGCAGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	72	85	+	6.93617	5.57e-05	0.0995	GGAGCCCCGCAGTG
CTCF	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	12	30	+	9.14754	5.57e-05	0.118	GCGGCGGCGGGGGGCGGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	21	39	+	9.14754	5.57e-05	0.118	CGGCCGGCGGGGGGGGCGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	21	39	+	9.14754	5.57e-05	0.118	CGGCCGGCGGGGGGGGCGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	21	39	+	9.14754	5.57e-05	0.118	CGGCCGGCGGGGGGGGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	21	39	+	9.14754	5.57e-05	0.118	CGGCCGGCGGGGGGGGCGG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	87	105	-	9.14754	5.57e-05	0.118	TCGACGCCCGGGGGCACCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	1	15	+	7	5.57e-05	0.0392	ACACGCCCCTGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	1	15	+	7	5.57e-05	0.0392	ACACGCCCCTGCGCG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	1	15	+	7	5.57e-05	0.0392	ACACGCCCCTGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	1	15	+	7	5.57e-05	0.0392	ACACGCCCCTGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	1	15	+	7	5.57e-05	0.0392	ACACGCCCCTGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	31	45	+	7	5.57e-05	0.0392	CCCCGCCCCGCCACC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	33	47	-	7	5.57e-05	0.0392	CCCCGCCCCGCCACC
EGR3	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	60	74	-	7	5.57e-05	0.0392	CTTCGCCCACCCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	55	69	-	10.8276	5.57e-05	0.013	GCCCCTCCTCCAATA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	41	50	+	10.9541	5.57e-05	0.0553	CCCCCCCAAA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	25	35	+	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	25	35	+	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	25	35	+	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	52	62	+	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	81	91	+	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	24	34	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	53	63	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	53	63	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	53	63	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	53	63	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	80	90	-	11.2879	5.57e-05	0.0469	TGCCCCTCCCT
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	45	+	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	45	+	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	60	+	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	66	+	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	47	57	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	49	59	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	55	65	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	55	65	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	55	65	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	55	65	-	11.3415	5.57e-05	0.0211	GCCCCTCCCCA
RXRG	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	77	90	+	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
RXRG	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	77	90	+	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
RXRG	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	77	90	+	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
RXRG	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	77	90	+	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
RXRG	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	77	90	+	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
RXRG	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	25	38	-	2.51064	5.57e-05	0.48	AGGGTCACAGGCCA
SP8	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	11	22	+	11.1711	5.57e-05	0.0309	CCTACTCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	14	25	+	11.1711	5.57e-05	0.0309	GACACCCCCCAC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	100	111	-	11.1711	5.57e-05	0.0309	GCCACAGCCACT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	25	-	9.62295	5.57e-05	0.365	ACCCCCCCGGGGCC
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	54	69	+	2.25862	5.57e-05	0.349	GTCCCGGCATGCTCCG
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	54	69	+	2.25862	5.57e-05	0.349	GTCCCGGCATGCTCCG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	52	67	-	2.25862	5.57e-05	0.349	TTTCCAGAATGCATGA
HOXA10	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	1	11	+	11.0566	5.58e-05	1	AGCCATTAAAC
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	89	100	+	11.0345	5.58e-05	0.365	TCGCCCCCCCAG
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	54	63	-	11.2586	5.58e-05	0.128	CCCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	57	66	-	11.2586	5.58e-05	0.128	CCCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	57	66	-	11.2586	5.58e-05	0.128	CCCAGCTGCA
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	89	98	-	11.2586	5.58e-05	0.128	CCCAGCTGCA
NHLH1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	105	114	-	11.2586	5.58e-05	0.128	CCCAGCTGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	18	29	+	11.5636	5.58e-05	0.055	TGCCTGCCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	18	29	+	11.5636	5.58e-05	0.055	TGCCTGCCGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	22	33	-	11.5636	5.58e-05	0.055	AGCCCCCGGCCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	34	45	+	11.5636	5.58e-05	0.055	CCCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	70	81	-	11.5636	5.58e-05	0.055	CCCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	93	+	11.5636	5.58e-05	0.055	CGCCTCAGGCCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	82	93	+	11.5636	5.58e-05	0.055	AGCCCCCGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	91	102	-	11.5636	5.58e-05	0.055	TCCCCTCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	91	102	-	11.5636	5.58e-05	0.055	TCCCCTCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	91	102	-	11.5636	5.58e-05	0.055	TCCCCTCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	91	102	-	11.5636	5.58e-05	0.055	TCCCCTCCGGCC
DUXA	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	62	74	+	11.5484	5.58e-05	1	GAGAGCTAATCAG
Pax6	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	17	30	-	10.9444	5.58e-05	1	TACACGCAAGAGTG
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	62	79	-	7.08163	5.58e-05	0.979	AGCAAGCAGGCGCATGCG
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	62	79	-	7.08163	5.58e-05	0.979	AGCAAGCAGGCGCATGCG
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	55	75	+	5.65306	5.58e-05	0.219	GGCAGTACCAGAGCGCGCGGC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	55	75	+	5.65306	5.58e-05	0.219	GGCAGTACCAGAGCGCGCGGC
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	-	11.6792	5.58e-05	1	GATTACGTCACC
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	-	11.6792	5.58e-05	1	GATTACGTCACC
MYF6	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	18	27	-	11.0455	5.58e-05	1	AACAGCAGTC
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	43	52	-	11.0455	5.58e-05	1	AACAGCAGTC
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	43	52	-	11.0455	5.58e-05	1	AACAGCAGTC
MYF6	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	88	97	+	11.0455	5.58e-05	1	AACAGCAGTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	40	50	+	11.3269	5.58e-05	0.0148	TGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	40	50	+	11.3269	5.58e-05	0.0148	TGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	49	59	+	11.3269	5.58e-05	0.0148	TGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	49	59	+	11.3269	5.58e-05	0.0148	TGCCCTCCTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	31	40	+	11.3939	5.58e-05	0.307	GGGGGGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	31	40	+	11.3939	5.58e-05	0.307	GGGGGGTTCC
Creb5	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	86	97	+	9.30909	5.58e-05	0.21	CGTGACGTCAGA
Creb5	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	18	29	-	9.30909	5.58e-05	0.21	CGTGACGTCAGA
NKX2-3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	88	97	+	11.8269	5.58e-05	1	GCCACTTCAG
NKX2-3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	88	97	+	11.8269	5.58e-05	1	GCCACTTCAG
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	46	62	+	10.9079	5.58e-05	0.65	GCGCTTGCGCACCAGCC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.7069	5.58e-05	0.107	CCCGGAAGCG
ETS1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.7069	5.58e-05	0.107	CCCGGAAGCG
Foxq1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	70	80	-	11.8673	5.58e-05	1	GACTGTTTAGT
Foxq1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	70	80	-	11.8673	5.58e-05	1	GACTGTTTAGT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	21	31	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	21	31	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	21	31	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	21	31	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	21	31	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	32	-	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	52	62	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	53	63	-	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	53	63	-	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	83	93	+	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	84	94	-	11.6182	5.58e-05	0.0549	AGCCGGCGGCG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	19	33	+	7.90789	5.58e-05	0.239	ATAGTGAGTAAGCTC
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	97	108	+	11.5273	5.58e-05	0.0893	GGCCTGGAGGCA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	75	91	+	10.2041	5.58e-05	0.368	AGGGGAAGCAGAGGGGA
Rarb(var.2)	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	55	71	-	-1.57576	5.58e-05	0.861	ACGTCAACGGGAGCGCA
Rarb(var.2)	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	44	60	+	-1.57576	5.58e-05	0.861	ACGTCAACGGGAGCGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	+	11.4727	5.58e-05	0.0702	TGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	+	11.4727	5.58e-05	0.0702	TGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	+	11.4727	5.58e-05	0.0702	TGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	+	11.4727	5.58e-05	0.0702	TGCCGGCGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	44	54	+	11.4727	5.58e-05	0.0702	CCCCCCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	34	-	11.4727	5.58e-05	0.0702	CCCCCCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	34	-	11.4727	5.58e-05	0.0702	CCCCCCAGGCC
Dlx1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.0351	5.58e-05	1	CCTAATTAGA
RFX4	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	4	19	-	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	89	104	+	10.3182	5.58e-05	0.282	AGTTGCTTTGCCTACT
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	89	104	+	10.3182	5.58e-05	0.282	AGTTGCTTTGCCTACT
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	96	111	+	10.3182	5.58e-05	0.282	TGTATCCTAGGCTACA
RUNX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	6	14	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	6	14	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	15	23	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	20	28	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	20	28	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	51	59	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	51	59	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	51	59	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	51	59	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	51	59	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	75	83	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	75	83	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	75	83	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	75	83	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	75	83	+	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	6	14	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	9	17	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	9	17	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	9	17	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	9	17	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	33	41	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	33	41	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	39	47	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	39	47	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	44	52	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	57	65	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	68	76	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	68	76	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	98	106	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	98	106	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	103	111	-	11.75	5.58e-05	0.442	AAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	103	111	-	11.75	5.58e-05	0.442	AAACCACAG
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	1	12	-	11.4516	5.58e-05	0.281	CCCACCACCGTC
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	82	93	-	11.4516	5.58e-05	0.281	GCTACCACCAGC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	100	111	+	11.4516	5.58e-05	0.281	GCTACCACCAGC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	100	111	+	11.4516	5.58e-05	0.281	GCTACCACCAGC
Klf1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	59	69	-	11.2727	5.58e-05	0.0469	CACCACGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	66	76	-	11.2727	5.58e-05	0.0469	CACCACGCCCC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	47	60	-	11.2273	5.59e-05	0.0575	GAGACCTTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	47	60	-	11.2273	5.59e-05	0.0575	GAGACCTTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	47	60	-	11.2273	5.59e-05	0.0575	GAGACCTTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	47	60	-	11.2273	5.59e-05	0.0575	GAGACCTTGGCCTG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	73	86	-	1.66667	5.59e-05	0.198	TCGTGGCGTCATCA
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	73	86	-	1.66667	5.59e-05	0.198	TCGTGGCGTCATCA
FOS	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	28	38	+	11.7021	5.59e-05	0.232	GATGAGTCACA
FOS	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	37	47	-	11.7021	5.59e-05	0.232	GATGAGTCACA
FOS	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	68	78	+	11.7021	5.59e-05	0.232	GATGAGTCACA
FOS	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	-	11.7021	5.59e-05	0.232	GCTGAGTCAGT
FOS	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	77	87	-	11.7021	5.59e-05	0.232	GATGAGTCACA
FOS	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	+	11.7021	5.59e-05	0.232	GCTGAGTCAGT
RREB1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	91	110	-	4.33945	5.59e-05	0.0589	CCAGAAAACAGCAGCAAACA
RREB1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	5	24	+	4.33945	5.59e-05	0.0589	CCAGAAAACAGCAGCAAACA
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	-	7.2069	5.59e-05	0.296	CGTCTCCATGACAATA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	-	7.2069	5.59e-05	0.296	CGTCTCCATGACAATA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	-	7.2069	5.59e-05	0.296	CGTCTCCATGACAATA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	-	7.2069	5.59e-05	0.296	CGTCTCCATGACAATA
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	96	110	-	10.7903	5.59e-05	1	CTTTCTCATTCAAGA
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	96	110	-	10.7903	5.59e-05	1	CTTTCTCATTCAAGA
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	4	19	-	10.6182	5.59e-05	0.039	CCCCGCCCCTGCTCCT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	34	49	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	34	49	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	34	49	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	29	44	-	10.6182	5.59e-05	0.039	CACCGCCTACGCGGTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	53	68	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	53	68	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	53	68	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	53	68	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	80	95	+	10.6182	5.59e-05	0.039	CCCCGCCCCTGCTCCT
EGR4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	66	81	-	10.6182	5.59e-05	0.039	CCCCGCCCCTGCCCCG
HNF4G	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	94	108	-	11.0962	5.59e-05	0.335	GGGGGCCAGAGAGCA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	34	44	+	11.6327	5.59e-05	0.202	CCGTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	34	44	+	11.6327	5.59e-05	0.202	CCGTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	1	11	-	11.6327	5.59e-05	0.202	GGATGAGTAAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	1	11	-	11.6327	5.59e-05	0.202	GGATGAGTAAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	1	11	-	11.6327	5.59e-05	0.202	GGATGAGTAAT
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	1	11	-	11.6327	5.59e-05	0.202	GGATGAGTAAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	68	78	-	11.6327	5.59e-05	0.202	CCGTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	68	78	-	11.6327	5.59e-05	0.202	CCGTGACTCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	17	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	17	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	17	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	17	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	17	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	61	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	61	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	70	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	70	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	70	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	70	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	70	+	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	45	55	-	10.8793	5.59e-05	0.0201	CTCCCGCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	57	67	-	10.8793	5.59e-05	0.0201	GAAACTCCCCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	7	20	+	9.2931	5.59e-05	0.0337	CTCCCCGCCCCTTC
KLF14	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	13	26	+	9.2931	5.59e-05	0.0337	CGTCCCGCCCCTGC
KLF14	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	51	64	+	9.2931	5.59e-05	0.0337	CGTCCCGCCCCTGC
KLF14	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	51	64	-	9.2931	5.59e-05	0.0337	CGTCCCGCCCCTGC
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	1	10	-	11.3636	5.59e-05	0.655	CTCAGCTGTC
TFAP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	1	10	-	11.3636	5.59e-05	0.655	CTCAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	1	10	-	11.3636	5.59e-05	0.655	CTCAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	1	10	-	11.3636	5.59e-05	0.655	CTCAGCTGTC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	3	14	+	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	3	14	+	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	34	45	-	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	34	45	-	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	51	62	-	11.0909	5.59e-05	0.109	GGCCGTCCGCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	51	62	-	11.0909	5.59e-05	0.109	GGCCGTCCGCCC
HINFP	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	70	81	+	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	88	99	+	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
HINFP	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	101	112	-	11.0909	5.59e-05	0.109	CCGGGTCCCCGC
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	51	61	+	10.5273	5.59e-05	0.019	CCCCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	23	33	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	23	33	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	23	33	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	23	33	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
NRF1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	54	64	-	10.5273	5.59e-05	0.019	CCCCGTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	75	85	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	75	85	-	10.5273	5.59e-05	0.019	GCGTCTGCCCA
Hes2	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	19	31	-	10.9365	5.59e-05	0.52	GTCGGAAACGTGA
Hes2	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	44	56	-	10.9365	5.59e-05	0.52	GTCGGAAACGTGA
Hes2	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	59	71	+	10.9365	5.59e-05	0.52	GTCGGAAACGTGA
Hes2	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	84	96	+	10.9365	5.59e-05	0.52	GTCGGAAACGTGA
NFYB	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	34	48	+	11.0769	5.59e-05	0.162	CAAGCACCCAATCGG
NFYB	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	67	81	-	11.0769	5.59e-05	0.162	CAAGCACCCAATCGG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	61	71	+	11.5192	5.59e-05	0.0744	CGCCTAAAGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	61	71	+	11.5192	5.59e-05	0.0744	CGCCTAAAGCA
TFEC	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	-	11.6341	5.59e-05	0.171	GTCATGTGAC
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	+	12.2885	5.59e-05	0.298	AGCACGTGGG
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	+	12.2885	5.59e-05	0.298	AGCACGTGGG
MAX	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	-	12.2885	5.59e-05	0.298	AGCACGTGGG
MAX	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	12.2885	5.59e-05	0.298	GGCACGTGGT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	14	30	+	4.50909	5.6e-05	0.0278	CCCTCCCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	14	30	+	4.50909	5.6e-05	0.0278	CCCTCCCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	36	52	+	4.50909	5.6e-05	0.0278	CCCTCCCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	52	68	+	4.50909	5.6e-05	0.0278	GCAGCGACGCCCTCACC
SP4	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	47	63	-	4.50909	5.6e-05	0.0278	GCAGCGACGCCCTCACC
SP4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	63	79	-	4.50909	5.6e-05	0.0278	CCCTCCCCGCCCCTCCC
Gata4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.1.0	97	107	-	11.9655	5.6e-05	1	TTTTATCTCTG
Gata4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.0.0	97	107	-	11.9655	5.6e-05	1	TTTTATCTCTG
Sox11	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	63	77	-	-13.1857	5.6e-05	1	ACCAAGGTCAGTGTT
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	98	107	-	10.7551	5.6e-05	0.222	TGGACATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	98	107	-	10.7551	5.6e-05	0.222	TGGACATTCC
MNT	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	12.303	5.6e-05	0.303	CCCACGTGTC
MNT	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	12.303	5.6e-05	0.303	CCCACGTGTC
MNT	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	12.303	5.6e-05	0.303	CCCACGTGTC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	65	82	+	-12.6184	5.6e-05	0.049	GGAAAGGAGGAGGCGTGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	33	50	-	-12.6184	5.6e-05	0.049	GGAAAGGAGGAGGCGTGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	58	75	-	-12.6184	5.6e-05	0.049	GGGAAGGAGAAAGGAGCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	58	75	-	-12.6184	5.6e-05	0.049	GGGAAGGAGAAAGGAGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	58	75	-	-12.6184	5.6e-05	0.049	GGGAAGGAGAAAGGAGCG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	58	75	-	-12.6184	5.6e-05	0.049	GGGAAGGAGAAAGGAGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	58	75	-	-12.6184	5.6e-05	0.049	GGGAAGGAGAAAGGAGCG
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	19	35	+	-4.60674	5.6e-05	1	CTGGGCCATAGGACAGT
USF2	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	103	113	+	11.6531	5.6e-05	0.143	CTCATGTGAGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	-	10.5574	5.6e-05	0.0641	CGCCGCTGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	-	10.5574	5.6e-05	0.0641	CGCCGCTGGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	+	10.5574	5.6e-05	0.0641	GGCCTCCGAGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	+	10.5574	5.6e-05	0.0641	GGCCTCCGAGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	-	10.5574	5.6e-05	0.0641	CGCCGCTGGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	-	10.5574	5.6e-05	0.0641	CGCCGCTGGGGCT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	+	10.5574	5.6e-05	0.0641	CGCCGCTGGGGCT
Nr5a2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	53	67	-	10.6207	5.6e-05	0.458	CACGTCAGGGTCAGG
NEUROD2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	73	82	-	11.6724	5.6e-05	1	GACATACGGT
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	11.6724	5.6e-05	1	ACCATATGTA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	43	55	+	10.7377	5.6e-05	0.0586	AGCCCCGCTGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	97	109	-	10.7377	5.6e-05	0.0586	AGCCACCCGGGCG
SP3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	27	+	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	67	77	+	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	78	88	+	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	34	44	-	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	70	80	-	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
SP3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	88	98	-	11.3171	5.6e-05	0.0211	CGCCCGCCCAC
TBR1	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	41	50	-	11.4681	5.6e-05	0.898	AGGTGTGAGT
TBR1	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	57	66	+	11.4681	5.6e-05	0.898	AGGTGTGAGT
TBR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	65	74	+	11.4681	5.6e-05	0.898	AGGTGTGAGT
TBR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	65	74	+	11.4681	5.6e-05	0.898	AGGTGTGAGT
TBR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	65	74	+	11.4681	5.6e-05	0.898	AGGTGTGAGT
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	65	74	+	11.4681	5.6e-05	0.898	AGGTGTGAGT
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	49	64	+	-1.38776	5.6e-05	0.877	GGGGACAGAGGGGCAG
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	49	64	+	-1.38776	5.6e-05	0.877	GGGGACAGAGGGGCAG
Rarg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	49	64	+	-1.38776	5.6e-05	0.877	GGGGACAGAGGGGCAG
Rarg	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	94	109	+	-1.38776	5.6e-05	0.877	AAGGTGGAGAGGTCGG
FOXF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	69	82	+	11.4778	5.6e-05	1	CGGAAGTAAACATT
FOXF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	69	82	+	11.4778	5.6e-05	1	CGGAAGTAAACATT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	86	100	+	6.98276	5.6e-05	0.0393	CTTCGCCTCCGCCTT
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	76	87	+	11.5778	5.6e-05	1	GGGTGCACTCGC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	76	87	+	11.5778	5.6e-05	1	GGGTGCACTCGC
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	4	18	-	11.3944	5.6e-05	0.341	AGAAGGAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	64	78	-	11.3944	5.6e-05	0.341	AGAAGGAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	64	78	-	11.3944	5.6e-05	0.341	AGAAGGAAAAAAAAA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	1	13	-	8.80303	5.6e-05	0.264	AGGGACTCTCCCA
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	73	82	-	10.6504	5.6e-05	0.956	TTTTTCCGTG
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	73	82	-	10.6504	5.6e-05	0.956	TTTTTCCGTG
NFATC1	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	104	113	-	10.6504	5.6e-05	0.956	TTTTTCCGTG
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	1	15	-	11.0851	5.6e-05	0.32	AGCAATGACCTCACA
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	18	32	+	11.0851	5.6e-05	0.32	GGCAGTGACATCACC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	19	33	+	11.0851	5.6e-05	0.32	CTAGATGACGCCAGA
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	39	53	-	11.0851	5.6e-05	0.32	GGCAGTGACATCACC
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	62	76	+	11.0851	5.6e-05	0.32	GGCAGTGACATCACC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	89	103	+	11.0851	5.6e-05	0.32	AGCAATGACCTCACA
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	82	96	-	11.0851	5.6e-05	0.32	CTAGATGACGCCAGA
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	83	97	-	11.0851	5.6e-05	0.32	GGCAGTGACATCACC
HLF	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	57	68	+	11.8305	5.6e-05	1	TCTTACACAACT
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	79	88	+	11.8077	5.6e-05	0.439	CAACCACAAG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	43	53	+	11.6552	5.61e-05	0.0651	TGGAGGGAAAT
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	103	113	+	11.6552	5.61e-05	0.0651	TGGAGGGAAAT
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	103	113	+	11.6552	5.61e-05	0.0651	TGGAGGGAAAT
GSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	95	104	-	11.4151	5.61e-05	1	CTTAATCCTC
GSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	95	104	-	11.4151	5.61e-05	1	CTTAATCCTC
HOXC12	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	1	11	+	11.2182	5.61e-05	1	TGTCATAAAAA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	10	24	+	11.0577	5.61e-05	0.44	AGGTCACACCCACAC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	47	61	-	11.0577	5.61e-05	0.44	AGGTCACACCCACAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	63	77	-	7.89474	5.61e-05	0.239	GGCCTGAGGAAGCAA
MEIS2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	9	16	-	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	17	24	-	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	88	95	-	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	96	103	-	11.8033	5.61e-05	0.972	GTGACAGC
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	21	28	-	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	71	78	-	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	71	78	-	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	99	106	-	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	5	12	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	5	12	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	5	12	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	32	39	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.0.0	47	54	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.1.0	47	54	+	11.5	5.61e-05	0.89	ATGACAGG
MEIS2	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	11	18	+	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	19	26	+	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr10:135061353..135061467,-__114.1.0.0	20	27	+	11.8033	5.61e-05	0.972	GTGACAGC
MEIS2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	103	110	+	11.8033	5.61e-05	0.972	GTGACAGC
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr6:58287638..58287752,-__753.1.0.0	97	107	+	11.569	5.61e-05	0.273	CGCTGTGGCTG
SP1	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	15	25	+	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	13	23	-	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	35	45	+	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
SP1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	27	37	-	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	53	63	+	11.3077	5.61e-05	0.0149	TCTCCTCCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	53	63	+	11.3077	5.61e-05	0.0149	TCTCCTCCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	53	63	+	11.3077	5.61e-05	0.0149	TCTCCTCCCCA
SP1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	52	62	-	11.3077	5.61e-05	0.0149	TCTCCTCCCCA
SP1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	78	88	+	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	86	96	-	11.3077	5.61e-05	0.0149	GCTCCGCCCTA
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	28	46	+	10.871	5.61e-05	0.147	GAGGGAGGCGGTGCAAGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	28	46	+	10.871	5.61e-05	0.147	GAGGGAGGCGGTGCAAGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	49	67	-	10.871	5.61e-05	0.147	GGGTGTCGCGGGGCGGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	69	87	-	10.871	5.61e-05	0.147	GAGGGAGGCGGTGCAAGGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	18	29	-	11.1579	5.61e-05	0.0309	GCCCCGCGCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	33	44	+	11.1579	5.61e-05	0.0309	GCCCCTCCCCTA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	33	44	+	11.1579	5.61e-05	0.0309	GCCCCTCCCCTA
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	33	44	+	11.1579	5.61e-05	0.0309	GCCCCTCCCCTA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	33	44	+	11.1579	5.61e-05	0.0309	GCCCCTCCCCTA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	33	44	-	11.1579	5.61e-05	0.0309	CCCACCCCTACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	33	44	-	11.1579	5.61e-05	0.0309	CCCACCCCTACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	33	44	-	11.1579	5.61e-05	0.0309	CCCACCCCTACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	33	44	-	11.1579	5.61e-05	0.0309	CCCACCCCTACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	33	44	-	11.1579	5.61e-05	0.0309	CCCACCCCTACC
SP8	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	71	82	-	11.1579	5.61e-05	0.0309	GCCCCTCCCCTA
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	47	66	+	7.57778	5.61e-05	1	CTGGGTCACCCGCACCCCGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	17	30	-	10.6731	5.61e-05	0.0226	GCCCAGCCCCCTGA
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	17	30	-	10.6731	5.61e-05	0.0226	GCCCAGCCCCCTGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	71	84	-	10.6731	5.61e-05	0.0226	CATCTGCCCACACC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	27	40	+	10.6731	5.61e-05	0.0226	TCGCCTCCCCCATT
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	59	72	+	10.6731	5.61e-05	0.0226	GCGCCGCCCTCGGG
CTCF	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	3	21	-	9.13115	5.61e-05	0.118	CGGCAACCAGGAGGTGGGC
CTCF	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	23	41	+	9.13115	5.61e-05	0.118	TGTGCGGTTGGGGGCGGTG
CTCF	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	25	43	+	9.13115	5.61e-05	0.118	TGTGCGGTTGGGGGCGGTG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	61	79	+	9.13115	5.61e-05	0.118	AGGCCTCAAGAGAGAGCCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	85	103	+	9.13115	5.61e-05	0.118	TGGCCGCCGGTAGGCGGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	85	103	+	9.13115	5.61e-05	0.118	TGGCCGCCGGTAGGCGGTG
CTCF	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	72	90	-	9.13115	5.61e-05	0.118	TGTGCGGTTGGGGGCGGTG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	90	108	+	9.13115	5.61e-05	0.118	CGGTCTCCGGGTGGCGAAG
CTCF	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	74	92	-	9.13115	5.61e-05	0.118	TGTGCGGTTGGGGGCGGTG
CTCF	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	94	112	+	9.13115	5.61e-05	0.118	CGGCAACCAGGAGGTGGGC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	62	73	-	11.2143	5.61e-05	0.217	TTCGCCCACCCC
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	24	41	-	9.62195	5.61e-05	0.164	CTCACACTCATTGGTCAG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	24	41	-	9.62195	5.61e-05	0.164	CTCACACTCATTGGTCAG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	62	71	+	11.3265	5.61e-05	0.133	GCCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	94	103	+	11.3265	5.61e-05	0.133	GCCACATGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	94	103	+	11.3265	5.61e-05	0.133	GCCACATGAC
ZNF740	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	42	51	+	10.945	5.61e-05	0.0553	GCCCCCGCAC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	56	65	+	10.945	5.61e-05	0.0553	GCCCCCGCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	64	73	+	10.945	5.61e-05	0.0553	GCCCCCGCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	64	73	+	10.945	5.61e-05	0.0553	GCCCCCGCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	64	73	+	10.945	5.61e-05	0.0553	GCCCCCGCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	64	73	-	10.945	5.61e-05	0.0553	GCCCCCGCAC
INSM1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	3	14	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	60	71	+	10.4388	5.62e-05	0.177	AGCAAGGGGGAA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	59	70	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	59	70	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	59	70	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	76	87	+	10.4388	5.62e-05	0.177	GGCTAGCGGGCG
INSM1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	101	112	+	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	98	109	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	98	109	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	98	109	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	98	109	-	10.4388	5.62e-05	0.177	GGGCAGGGGCAG
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	53	67	+	10.0303	5.62e-05	0.306	TTGCTTTTATTTTCA
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	66	80	+	10.0303	5.62e-05	0.306	TTGCTTTTATTTTCA
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	35	49	-	10.0303	5.62e-05	0.306	TTGCTTTTATTTTCA
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	48	62	-	10.0303	5.62e-05	0.306	TTGCTTTTATTTTCA
E2F7	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	81	94	-	-3.83607	5.62e-05	1	CTCTCCCGCTAGAT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	56	70	+	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	56	70	+	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	56	70	+	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	56	70	+	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	56	70	+	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SP2	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	45	59	-	10.8103	5.62e-05	0.0131	GTCCCGCCCAGGCAA
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	24	36	+	11.1475	5.62e-05	0.359	CTGCCTATCAGCT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	13	22	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	13	22	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	13	22	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	13	22	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	26	-	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	26	-	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	26	-	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	28	37	-	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	33	42	-	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	73	82	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	78	87	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
Klf4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	89	98	+	11.1837	5.62e-05	0.0213	GGGGTGGGCC
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	46	55	-	11.7759	5.62e-05	0.859	ACCAGCTGGA
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	46	55	-	11.7759	5.62e-05	0.859	ACCAGCTGGA
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	46	55	-	11.7759	5.62e-05	0.859	ACCAGCTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	53	73	-	10	5.62e-05	0.0178	GGGAGGGAGGGGAGAGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	53	73	-	10	5.62e-05	0.0178	GGGAGGGAGGGGAGAGGAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	57	77	-	10	5.62e-05	0.0178	AGAGCAGGGGAGCGGAGATGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	67	87	-	10	5.62e-05	0.0178	GGGGCGGGGGGGGGCGGGGCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	10	30	+	10	5.62e-05	0.0178	GGGGAAAGACAAAGTGGGGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	12	32	+	10	5.62e-05	0.0178	AGAGCAGGGGAGCGGAGATGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	28	48	+	10	5.62e-05	0.0178	CGAGAAGGAAGGGGCGGGGCT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	29	49	+	10	5.62e-05	0.0178	GAGGGAGGCGGCGGGTGGCAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	29	49	+	10	5.62e-05	0.0178	GAGGGAGGCGGCGGGTGGCAG
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	91	107	-	-1.60606	5.62e-05	0.861	GGGTCACCTGGCGGCCA
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	10.5962	5.62e-05	1	ACCATATGCA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	32	43	+	9.59016	5.62e-05	0.103	AAACAGGAAGCA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	96	-	9.59016	5.62e-05	0.103	AAACAGGAAGCA
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	25	34	+	11.6854	5.62e-05	0.871	GTGGAGTGAC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	29	39	-	11.3469	5.62e-05	0.188	GTCACGTGGCA
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	29	39	-	11.3469	5.62e-05	0.188	GTCACGTGGCA
HOXD11	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	60	-	11.8169	5.62e-05	1	GTCATTAAAA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	71	81	+	11.5606	5.62e-05	0.326	CGCCGCCATAT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	71	81	+	11.5606	5.62e-05	0.326	CGCCGCCATAT
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	71	81	+	11.5606	5.62e-05	0.326	CGCCGCCATAT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	71	81	+	11.5606	5.62e-05	0.326	CGCCGCCATAT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	86	96	+	11.5606	5.62e-05	0.326	TGCCGCCATGT
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	86	96	+	11.5606	5.62e-05	0.326	TGCCGCCATGT
HES7	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	56	67	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	58	69	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	58	69	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	58	69	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	58	69	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	58	69	+	4	5.62e-05	0.189	CCGCGCGTGCCC
HES7	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	48	59	-	4	5.62e-05	0.189	CCGCGCGTGCCC
Zfx	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	13	26	+	11.2121	5.63e-05	0.0575	GCGGGAGGGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	38	51	-	11.2121	5.63e-05	0.0575	GCGGGAGGGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	64	77	+	11.2121	5.63e-05	0.0575	GCGGGAGGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	89	102	-	11.2121	5.63e-05	0.0575	GCGGGAGGGGCCTC
GCM1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	93	103	+	11.1837	5.63e-05	0.531	CCTGCGGGTGT
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	39	49	+	11.6364	5.63e-05	0.0624	GGCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	39	49	+	11.6364	5.63e-05	0.0624	GGCCTTCCGGC
NFKB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	5	17	-	2.89796	5.63e-05	0.253	ATGTGATTCCCCC
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	5	17	-	2.89796	5.63e-05	0.253	ATGTGATTCCCCC
NFKB1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	98	110	+	2.89796	5.63e-05	0.253	ATGTGATTCCCCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	69	79	+	11.4545	5.63e-05	0.0702	ACCCGGAGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	104	114	+	11.4545	5.63e-05	0.0702	ACCCGGAGGCT
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	1	11	-	11.4545	5.63e-05	0.0702	ACCCGGAGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	-	11.4545	5.63e-05	0.0702	CGCCCGAGGGG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	-	11.4545	5.63e-05	0.0702	CGCCCGAGGGG
ERG	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	42	51	+	11.6909	5.63e-05	0.122	ACAGGAAGCG
ERG	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	37	46	-	11.6909	5.63e-05	0.122	ACAGGAAGCG
ERG	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	50	59	+	11.6909	5.63e-05	0.122	ACAGGAAGCG
ERG	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	69	78	+	11.6909	5.63e-05	0.122	ACAGGAAGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	42	52	+	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	42	52	+	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	87	97	+	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	18	28	-	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	55	65	-	10.5091	5.63e-05	0.0191	GCGCCGGCGAA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	55	65	-	10.5091	5.63e-05	0.0191	GCGCCGGCGAA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	57	67	-	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	57	67	-	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	63	73	-	10.5091	5.63e-05	0.0191	CAGCCGGCGCA
BHLHE40	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	11.8077	5.63e-05	0.273	GCCACGTGAC
BHLHE40	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	11.8077	5.63e-05	0.273	GCCACGTGAC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	5	18	+	9.27586	5.63e-05	0.0337	CGCCCCGCCCTCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	26	39	+	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	26	39	+	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	26	39	+	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	26	39	+	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	30	43	-	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	49	62	-	9.27586	5.63e-05	0.0337	CGCCCCGCCCTCCG
KLF14	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	72	85	+	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	76	89	-	9.27586	5.63e-05	0.0337	CGCCACGCCCCGGA
KLF14	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	94	107	+	9.27586	5.63e-05	0.0337	ATGCACGCCCACTG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	31	41	+	11.7308	5.63e-05	0.384	AAAATGAGTGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	31	41	+	11.7308	5.63e-05	0.384	AAAATGAGTGA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	37	49	+	8.78788	5.63e-05	0.264	GGGGTCAGCCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	66	78	-	8.78788	5.63e-05	0.264	GGGGTCAGCCCCA
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	66	78	-	8.78788	5.63e-05	0.264	GGGGTCAGCCCCA
Tcf21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	88	101	+	6.97368	5.63e-05	0.56	CCACCAGCTGCAGT
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	88	101	+	6.97368	5.63e-05	0.56	CCACCAGCTGCAGT
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	88	101	+	6.97368	5.63e-05	0.56	CCACCAGCTGCAGT
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	88	101	+	6.97368	5.63e-05	0.56	CCACCAGCTGCAGT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	62	75	+	11.5962	5.63e-05	0.223	ATCCAGTGACTCAG
Hic1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	99	107	+	11.4423	5.63e-05	0.516	GTGCCACCT
SNAI2	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	61	69	+	11.8372	5.63e-05	0.472	TACAGGTGT
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	105	113	-	11.4423	5.63e-05	0.516	GTGCCACCT
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	105	113	-	11.4423	5.63e-05	0.516	GTGCCACCT
HINFP	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	64	75	-	11.0758	5.64e-05	0.109	CAGGGTCCTCGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	54	71	+	-12.6579	5.64e-05	0.0491	GGAAGAGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	54	71	+	-12.6579	5.64e-05	0.0491	GGAAGAGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	61	78	-	-12.6579	5.64e-05	0.0491	GGAAGAGGGGAGGCCGAG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	61	78	-	-12.6579	5.64e-05	0.0491	GGAAGAGGGGAGGCCGAG
ELF5	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	47	57	-	11.5455	5.64e-05	0.139	TCCAGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	58	68	+	11.5455	5.64e-05	0.139	TCCAGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	58	68	+	11.5455	5.64e-05	0.139	TCCAGGAAGCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	7	21	-	9.8	5.64e-05	0.122	GGGGGGGGGGGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	10	24	-	9.8	5.64e-05	0.122	GAGGGGGGGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	40	54	-	9.8	5.64e-05	0.122	GAGGGGGGGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	55	69	+	9.8	5.64e-05	0.122	GAGGGGGGGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	42	56	-	9.8	5.64e-05	0.122	GGGGGGGGGGGGCCG
NR2C2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	59	73	+	9.8	5.64e-05	0.122	GGGGGGGGGGGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	46	60	-	9.8	5.64e-05	0.122	GAGGGGGGGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	61	75	+	9.8	5.64e-05	0.122	GAGGGGGGGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	94	108	+	9.8	5.64e-05	0.122	GGGGGGGGGGGGCCG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	47	56	+	11.2241	5.64e-05	0.128	GGCAGCTGAG
NHLH1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	59	68	-	11.2241	5.64e-05	0.128	GGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	77	86	-	11.2241	5.64e-05	0.128	GGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	77	86	-	11.2241	5.64e-05	0.128	GGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	88	97	-	11.2241	5.64e-05	0.128	GGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	88	97	-	11.2241	5.64e-05	0.128	GGCAGCTGAG
SOX8	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	7	22	+	-11.7576	5.64e-05	1	AACAAGGTCTATTGGT
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	49	62	-	6.11224	5.64e-05	0.365	TGGCCCCACCCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	49	62	-	6.11224	5.64e-05	0.365	TGGCCCCACCCCAG
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	49	62	-	6.11224	5.64e-05	0.365	TGGCCCCACCCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	49	62	-	6.11224	5.64e-05	0.365	TGGCCCCACCCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	49	62	-	6.11224	5.64e-05	0.365	TGGCCCCACCCCAG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	60	73	+	6.11224	5.64e-05	0.365	GGGCCCTCTGCCAA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	21	37	+	10.1837	5.64e-05	0.368	GGGTCACAGTGAGGCGG
ELF3	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	16	28	+	8.7931	5.64e-05	0.16	GAGCCGGATGTGT
ELF3	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	22	34	-	8.7931	5.64e-05	0.16	GAGCCGGATGTGT
ELF3	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	81	93	+	8.7931	5.64e-05	0.16	GAGCCGGATGTGT
ELF3	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	87	99	-	8.7931	5.64e-05	0.16	GAGCCGGATGTGT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	15	26	+	11.5455	5.64e-05	0.055	CGGCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	15	26	+	11.5455	5.64e-05	0.055	CGGCCCGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	-	11.5455	5.64e-05	0.055	GGCCTCCGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	-	11.5455	5.64e-05	0.055	GGCCTCCGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	+	11.5455	5.64e-05	0.055	GGCCTCCGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	-	11.5455	5.64e-05	0.055	GGCCTCCGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	64	-	11.5455	5.64e-05	0.055	CGGCCCGGGGCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	+	11.5455	5.64e-05	0.055	GGCCTCCGGGCG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	21	31	+	11.0727	5.64e-05	0.206	GGCTGACTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	41	51	-	11.0727	5.64e-05	0.206	GGCTGACTCAT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	83	97	+	9.13115	5.64e-05	0.463	ATGACTCATGAGTAG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	+	10.7213	5.64e-05	0.0586	CGCCCCCACGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	+	10.7213	5.64e-05	0.0586	CGCCCCCACGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	+	10.7213	5.64e-05	0.0586	CGCCCCCACGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	+	10.7213	5.64e-05	0.0586	CGCCCCCACGGCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	+	10.7213	5.64e-05	0.0586	TGCCTTTTGGGGA
KLF5	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	2	11	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	8	17	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	17	26	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	29	38	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	30	39	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	30	39	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	31	40	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	31	40	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	31	40	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	31	40	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	32	41	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	53	62	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	53	62	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	56	65	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	60	69	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	73	82	-	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	81	90	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	83	92	-	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	25	34	+	11.5918	5.64e-05	0.0213	GCCTCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	25	34	+	11.5918	5.64e-05	0.0213	GCCTCACCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	42	+	11.5918	5.64e-05	0.0213	GCCCCACCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	42	51	+	11.5918	5.64e-05	0.0213	GCCTCACCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	72	81	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	94	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	94	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	94	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	94	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	89	98	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	104	113	+	11.5918	5.64e-05	0.0213	CCTCCACCCC
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	81	101	-	5.62245	5.64e-05	0.219	GCCAGCTACCTAGACAGGGCC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	81	101	-	5.62245	5.64e-05	0.219	GCCAGCTACCTAGACAGGGCC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	24	33	+	11.6667	5.64e-05	0.585	AACATGTGTT
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	57	66	-	11.6667	5.64e-05	0.585	AACATGTGTT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	27	39	+	10.541	5.64e-05	0.0641	GGCCGCGAGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	27	39	+	10.541	5.64e-05	0.0641	GGCCGCGAGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	+	10.541	5.64e-05	0.0641	TGCCTTTTGGGGA
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	34	44	-	11.6	5.64e-05	0.0551	GGCCGCAGGCG
EHF	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	95	106	+	10.6393	5.64e-05	0.128	AAGCAGGAAGCA
EHF	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	9	20	-	10.6393	5.64e-05	0.128	AAGCAGGAAGCA
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	47	56	+	11.3429	5.65e-05	0.104	ACGGGAAGTA
TCF4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	101	110	-	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	5	14	+	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	10	19	+	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	10	19	+	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	10	19	+	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	10	19	+	12.551	5.65e-05	0.422	GGCACCTGGC
TCF4	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	49	58	+	12.551	5.65e-05	0.422	GGCACCTGGC
EGR4	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	10	25	+	10.6	5.65e-05	0.039	GCCCTCCCCCGCCCGG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	27	42	+	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	27	42	+	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	27	42	+	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	27	42	+	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	31	46	+	10.6	5.65e-05	0.039	CACCTCCCCCGCCGTC
EGR4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	21	36	-	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	35	50	-	10.6	5.65e-05	0.039	CGACTCCCCCGCCCAG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	64	79	+	10.6	5.65e-05	0.039	TTCCGCCCACCTGCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	64	79	+	10.6	5.65e-05	0.039	TTCCGCCCACCTGCCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	71	86	+	10.6	5.65e-05	0.039	CCCCGCCCCCTCCCAG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	71	86	+	10.6	5.65e-05	0.039	CCCCGCCCCCTCCCAG
EGR4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	79	94	+	10.6	5.65e-05	0.039	CACCCCCCCCGCCCCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	69	84	-	10.6	5.65e-05	0.039	CACCTCCCCCGCCGTC
EGR4	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	90	105	-	10.6	5.65e-05	0.039	GCCCTCCCCCGCCCGG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	8	17	-	11.5082	5.65e-05	0.25	GGCCACGTGC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	26	37	+	11.449	5.65e-05	0.0866	TGGCTCAGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	92	103	-	11.449	5.65e-05	0.0866	TGGCTCAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	+	10.3966	5.65e-05	0.0554	GGCCCGGCGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	+	10.3966	5.65e-05	0.0554	GGCCCGGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	+	10.3966	5.65e-05	0.0554	GGCCCGGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	+	10.3966	5.65e-05	0.0554	GGCCCGGCGGGGC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	+	10.3966	5.65e-05	0.0554	GGCCCGCTGGGGA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	-	10.3966	5.65e-05	0.0554	CGCCGCTAGGGGA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	18	32	+	8.6	5.65e-05	0.108	CACCCCCTGCAGGCT
ZIC3	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	46	60	+	8.6	5.65e-05	0.108	CGCAACCCGGTGCGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	55	69	-	8.6	5.65e-05	0.108	CGCAACCCGGTGCGC
GLIS3	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	18	31	-	4.42424	5.65e-05	0.379	TCCCCCCCGCGCCG
RXRB	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	50	63	+	1.4	5.65e-05	0.515	GGGGTCAGAAGGCA
E2F3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	16	33	-	3.8	5.65e-05	1	TGATTGGGCGCGACATGG
E2F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	16	33	-	3.8	5.65e-05	1	TGATTGGGCGCGACATGG
Ar	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	-	7.18966	5.65e-05	0.882	GAGAACATCCAGTACAC
Ar	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	-	7.18966	5.65e-05	0.882	GAGAACATCCAGTACAC
Ar	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	-	7.18966	5.65e-05	0.882	GAGAACATCCAGTACAC
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	29	43	+	11.1171	5.65e-05	0.182	CTGGGCCAAAGTCCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	72	86	-	11.1171	5.65e-05	0.182	CTGGGCCAAAGTCCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	72	86	-	11.1171	5.65e-05	0.182	CTGGGCCAAAGTCCG
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	11.6731	5.65e-05	0.157	CGCACGTGAT
TFEB	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	11.6731	5.65e-05	0.157	CGCACGTGAT
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	68	77	+	11.1452	5.65e-05	1	AATTTCCATC
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	68	77	+	11.1452	5.65e-05	1	AATTTCCATC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	16	26	-	11.4364	5.65e-05	0.0702	CGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	98	108	-	11.4364	5.65e-05	0.0702	CGCCCGCGGCC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	16	30	-	11.0638	5.65e-05	0.32	AGGGCTGATGTCATG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	85	99	+	11.0638	5.65e-05	0.32	AGGGCTGATGTCATG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	85	99	+	11.0638	5.65e-05	0.32	AGGGCTGATGTCATG
SP8	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	36	47	+	11.1316	5.65e-05	0.0309	GCCCCGGCCCCA
SP8	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	68	79	-	11.1316	5.65e-05	0.0309	GCCCCGGCCCCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	4	20	+	4.47273	5.65e-05	0.028	CCCGCCCCGCCCGCAGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	4	20	+	4.47273	5.65e-05	0.028	CCCGCCCCGCCCGCAGG
SP4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	37	53	+	4.47273	5.65e-05	0.028	TCTCCCCCGCCCCCAAC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	26	44	-	9.11475	5.65e-05	0.118	CCGCCTGAAGTTGGAGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	26	44	-	9.11475	5.65e-05	0.118	CCGCCTGAAGTTGGAGCCG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	80	98	+	9.11475	5.65e-05	0.118	CTGCCACCTAGTGGCGGAA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	80	98	+	9.11475	5.65e-05	0.118	CTGCCACCTAGTGGCGGAA
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	28	38	-	12.1837	5.65e-05	0.18	CACAGCTGGGT
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	28	38	-	12.1837	5.65e-05	0.18	CACAGCTGGGT
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	79	89	+	12.1837	5.65e-05	0.18	CACAGCTGGGT
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	79	89	+	12.1837	5.65e-05	0.18	CACAGCTGGGT
BATF3	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	71	84	+	1.62121	5.65e-05	0.198	TCGTGACGCCATCA
BATF3	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	46	59	-	1.62121	5.65e-05	0.198	TCGTGACGCCATCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	42	52	+	9.89655	5.65e-05	0.0818	ACGCCCACTTG
EGR2	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	45	55	+	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	40	50	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	40	50	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	40	50	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	40	50	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	40	50	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	60	70	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	60	70	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	60	70	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	60	70	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	60	70	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	88	98	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	88	98	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	88	98	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	88	98	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	88	98	-	9.89655	5.65e-05	0.0818	ACGCCCACGAG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	40	51	+	11.5091	5.66e-05	0.0893	CCGCCCAGGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	40	51	+	11.5091	5.66e-05	0.0893	CCGCCCAGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	12	23	-	11.5091	5.66e-05	0.0893	CGCCCCCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	12	23	-	11.5091	5.66e-05	0.0893	CGCCCCCGGCCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	12	23	-	11.5091	5.66e-05	0.0893	CGCCCCCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	12	23	-	11.5091	5.66e-05	0.0893	CGCCCCCGGCCT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	70	84	-	7.86842	5.66e-05	0.239	GAAATGAGGAAGCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	70	84	-	7.86842	5.66e-05	0.239	GAAATGAGGAAGCAG
SMAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	45	54	+	9.92727	5.66e-05	1	CGTCCAGACT
SMAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	45	54	+	9.92727	5.66e-05	1	CGTCCAGACT
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.6897	5.66e-05	0.107	AGCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.6897	5.66e-05	0.107	AGCGGAAGTC
E2F4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	14	24	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	16	26	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	23	33	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	23	33	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	23	33	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	23	33	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	55	65	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	55	65	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	60	70	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	69	79	-	11.3448	5.66e-05	0.0475	CCGCGCGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	85	95	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	92	102	-	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	97	107	-	11.3448	5.66e-05	0.0475	GGGCGGGGGGT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	5	15	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	5	15	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	11	21	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	11	21	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	20	30	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	29	39	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	36	46	+	11.3448	5.66e-05	0.0475	CCGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	39	49	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	39	49	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	39	49	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	39	49	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	43	53	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	50	60	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	62	72	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	67	77	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	67	77	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	89	99	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	91	101	+	11.3448	5.66e-05	0.0475	CCGCGCGAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	91	101	+	11.3448	5.66e-05	0.0475	GGGCGGGGGCG
ELK1	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	10.6809	5.66e-05	0.0895	GACGGAAGTG
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	43	55	-	11.1311	5.66e-05	0.359	CTGCCTCCCTCCT
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	60	72	+	11.1311	5.66e-05	0.359	CTGCCTCCCTCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	54	64	+	11.2927	5.66e-05	0.0213	CCCACGCCGCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	85	95	+	11.2927	5.66e-05	0.0213	TCCACACCCAA
SP3	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	34	44	-	11.2927	5.66e-05	0.0213	TCCACACCCAA
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	45	56	+	11	5.66e-05	0.365	GAGACCCCCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	79	96	-	-12.6842	5.66e-05	0.0492	GGGGGAAAGAAGGCAAGG
SP2	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	14	28	-	10.7931	5.66e-05	0.0132	GCTCTTCCCCCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	16	30	-	10.7931	5.66e-05	0.0132	CCCGCGCCTCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	16	30	-	10.7931	5.66e-05	0.0132	CCCGCGCCTCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	16	30	-	10.7931	5.66e-05	0.0132	CCCGCGCCTCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	30	44	-	10.7931	5.66e-05	0.0132	CCCGCGCCTCCGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	30	44	-	10.7931	5.66e-05	0.0132	CCCGCGCCTCCGCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	97	111	-	10.7931	5.66e-05	0.0132	CCTCCGCCCACCGTT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	97	111	-	10.7931	5.66e-05	0.0132	CCTCCGCCCACCGTT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	97	111	-	10.7931	5.66e-05	0.0132	CCTCCGCCCACCGTT
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	17	27	+	10.8367	5.66e-05	0.309	TGCCACGTGAT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	17	27	+	10.8367	5.66e-05	0.309	TGCCACGTGAT
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	22	40	-	10.8548	5.66e-05	0.147	GGCGCCAGCGGAGCGGGGG
TAL1::TCF3	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	102	113	+	11.3258	5.66e-05	1	CCACCAGATGCT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	41	49	+	11.5841	5.66e-05	1	TATGGAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	41	49	+	11.5841	5.66e-05	1	TATGGAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	41	49	+	11.5841	5.66e-05	1	TATGGAAAT
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	12	29	+	5.25862	5.66e-05	0.285	ATAAAATGCCCCTTAATC
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	26	40	-	6.94828	5.66e-05	0.0393	CTCCGCCTAGGCAGC
Zfx	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	16	29	+	11.197	5.66e-05	0.0577	CCAGCCGCAGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	86	99	-	11.197	5.66e-05	0.0577	CCAGCCGCAGCCTC
DUXA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	74	86	-	11.5161	5.66e-05	1	TAGAATTAATCAA
DUXA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	74	86	-	11.5161	5.66e-05	1	TAGAATTAATCAA
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	28	37	+	9.90909	5.67e-05	0.247	ATCACGCGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	28	37	+	9.90909	5.67e-05	0.247	ATCACGCGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	28	37	+	9.90909	5.67e-05	0.247	ATCACGCGAG
SREBF2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	78	87	-	9.90909	5.67e-05	0.247	ATCACGCGAG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	26	37	+	10.7414	5.67e-05	0.33	GCGGCCACCATA
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	26	37	+	10.7414	5.67e-05	0.33	GCGGCCACCATA
KLF14	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	26	39	+	9.25862	5.67e-05	0.0337	TGCCACCCCTCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	19	32	-	9.25862	5.67e-05	0.0337	CCTCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	19	32	-	9.25862	5.67e-05	0.0337	CCTCCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	40	53	+	9.25862	5.67e-05	0.0337	CCTCCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	40	53	+	9.25862	5.67e-05	0.0337	CCTCCCGCCCCCTC
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	8	17	-	11.75	5.67e-05	0.805	ATTATGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	8	17	-	11.75	5.67e-05	0.805	ATTATGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	40	49	+	11.75	5.67e-05	0.805	ATTATGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	31	40	-	11.75	5.67e-05	0.805	ATTATGCAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	40	49	+	11.75	5.67e-05	0.805	ATTATGCAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	31	40	-	11.75	5.67e-05	0.805	ATTATGCAAC
SRF	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	44	59	+	5.7541	5.67e-05	0.966	AGGCTATATAAGGAGC
SRF	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	56	71	-	5.7541	5.67e-05	0.966	AGGCTATATAAGGAGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	29	42	-	10.6538	5.67e-05	0.0227	GACCCACCCACAGA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	53	66	-	10.6538	5.67e-05	0.0227	GTTCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	53	66	-	10.6538	5.67e-05	0.0227	GTTCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	96	109	-	10.6538	5.67e-05	0.0227	CCTCCACCTCCAGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	96	109	-	10.6538	5.67e-05	0.0227	CCTCCACCTCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	96	109	-	10.6538	5.67e-05	0.0227	CCTCCACCTCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	96	109	-	10.6538	5.67e-05	0.0227	CCTCCACCTCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	96	109	-	10.6538	5.67e-05	0.0227	CCTCCACCTCCAGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	21	34	+	10.6538	5.67e-05	0.0227	GTCCCACCTCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	51	64	+	10.6538	5.67e-05	0.0227	GTTCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	51	64	+	10.6538	5.67e-05	0.0227	GTTCCTCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	71	84	+	10.6538	5.67e-05	0.0227	GGCCCGCCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	71	84	+	10.6538	5.67e-05	0.0227	GGCCCGCCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	91	104	+	10.6538	5.67e-05	0.0227	GCGCCTCCGCCGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	91	104	+	10.6538	5.67e-05	0.0227	GCGCCTCCGCCGGA
RREB1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	81	100	+	4.29358	5.67e-05	0.0597	CTCCCTCCCACACACCCAGG
TBX15	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	42	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	74	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	88	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	103	110	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	113	-	11.1346	5.67e-05	0.661	AGGTGCGA
MGA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	4	11	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	4	11	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	18	25	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	18	25	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	18	25	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	34	41	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	34	41	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	34	41	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	34	41	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	52	59	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	59	66	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	59	66	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	59	66	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	59	66	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	72	79	-	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	106	113	-	11.4545	5.67e-05	0.816	AGGCGTGA
TBX15	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	12	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	34	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	34	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	34	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	34	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	34	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	41	48	+	11.1346	5.67e-05	0.661	AGGTGCGA
TBX15	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	73	80	+	11.1346	5.67e-05	0.661	AGGTGCGA
MGA	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	2	9	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	11	18	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	22	29	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	22	29	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	50	57	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	60	67	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	73	80	+	11.4545	5.67e-05	0.816	AGGCGTGA
MGA	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	90	97	+	11.4545	5.67e-05	0.816	AGGCGTGA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	60	80	-	9.40323	5.67e-05	0.183	CTCCCCTTCCTCTTCCATTTA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	6	16	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	6	16	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	6	16	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	47	57	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	47	57	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	47	57	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	47	57	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	47	57	+	11.2787	5.67e-05	0.0604	CCGGAAGGAGG
RXRA::VDR	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	65	79	-	6.49541	5.67e-05	1	GCGTCGCGAGGTTCC
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	65	79	-	6.49541	5.67e-05	1	GCGTCGCGAGGTTCC
RXRA::VDR	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	36	50	+	6.49541	5.67e-05	1	GCGTCGCGAGGTTCC
BHLHE22	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	22	31	+	11.2273	5.67e-05	1	AACATACGCC
NR3C2	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	16	32	-	5.70213	5.67e-05	1	AAGTACAGGAAGTGCTG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr14:56263371..56263485,-__292.1.0.0	12	21	-	11.051	5.67e-05	0.243	TGTCACGAGA
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	47	56	+	11.051	5.67e-05	0.243	CGTCACGGGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	47	56	+	11.051	5.67e-05	0.243	CGTCACGGGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	47	56	+	11.051	5.67e-05	0.243	CGTCACGGGG
Klf4	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	6	15	-	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	17	26	-	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	17	26	-	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	29	38	+	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	29	38	+	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	41	50	+	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	49	58	-	11.1735	5.67e-05	0.0214	AGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	49	58	-	11.1735	5.67e-05	0.0214	AGGGCGGTGC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	69	79	+	10.6909	5.67e-05	0.258	AAGCGGATGTT
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	12	22	-	10.6909	5.67e-05	0.258	AAGCGGATGTT
ESR2	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	33	47	-	11.0385	5.67e-05	0.441	GGGGCACCGCCCCCT
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	21	31	+	11.3333	5.67e-05	1	TGACGTAATCT
NFIL3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	21	31	+	11.3333	5.67e-05	1	TGACGTAATCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	+	10.5246	5.67e-05	0.0641	TGCCTTCACGGGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	+	10.5246	5.67e-05	0.0641	TGCCTTCACGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	+	10.5246	5.67e-05	0.0641	TGCCTTCACGGGA
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	-	10.5246	5.67e-05	0.0641	TCCCCGGGCGGCT
ZIC4	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	21	35	+	10.6909	5.67e-05	0.109	GGACTCCTGCTGAGG
ZIC4	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	23	37	+	10.6909	5.67e-05	0.109	CGCTCCCCGCAGGGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	9	23	-	10.6909	5.67e-05	0.109	GCGCCCCCGGGGTGT
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	9	23	-	10.6909	5.67e-05	0.109	GCGCCCCCGGGGTGT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	21	35	-	10.6909	5.67e-05	0.109	GCCGACCTGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	21	35	-	10.6909	5.67e-05	0.109	GCCTACCTGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	21	35	-	10.6909	5.67e-05	0.109	GCCGACCTGCCGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	21	35	-	10.6909	5.67e-05	0.109	GCCTACCTGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	23	37	-	10.6909	5.67e-05	0.109	GGACTCCTGCTGAGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	23	37	-	10.6909	5.67e-05	0.109	GGACTCCTGCTGAGG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	78	92	+	10.6909	5.67e-05	0.109	GGACTCCTGCTGAGG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	80	94	-	10.6909	5.67e-05	0.109	GGACTCCTGCTGAGG
RFX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	96	111	+	9.65152	5.67e-05	0.326	AATAACCATGACAATG
RFX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	96	111	+	9.65152	5.67e-05	0.326	AATAACCATGACAATG
RFX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	96	111	+	9.65152	5.67e-05	0.326	AATAACCATGACAATG
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	96	111	+	9.65152	5.67e-05	0.326	AATAACCATGACAATG
NR2C2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	34	48	+	9.78571	5.67e-05	0.122	TCAGGTGGAAGGTGG
NR2C2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	54	68	+	9.78571	5.67e-05	0.122	AGGGGGAGGAGGTGA
NR2C2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	47	61	-	9.78571	5.67e-05	0.122	AGGGGGAGGAGGTGA
NR2C2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	67	81	-	9.78571	5.67e-05	0.122	TCAGGTGGAAGGTGG
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	33	44	+	11.4355	5.67e-05	0.281	CCGCCCACCGGG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	97	108	-	11.4355	5.67e-05	0.281	CCGCCCACCGTT
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	97	108	-	11.4355	5.67e-05	0.281	CCGCCCACCGTT
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	97	108	-	11.4355	5.67e-05	0.281	CCGCCCACCGTT
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	101	112	-	11.4355	5.67e-05	0.281	CCGCCCACCGGG
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	101	112	-	11.4355	5.67e-05	0.281	CCGCCCACCGGG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	101	112	-	11.4355	5.67e-05	0.281	CCGCCCACCGGG
JUND	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	18	28	+	11.0213	5.67e-05	0.214	TCTGACTCAGG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	24	38	-	9.11475	5.68e-05	0.463	GTGACTCACCAGCCC
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	34	48	+	9.11475	5.68e-05	0.463	GTGACTCACCAGCCC
T	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	43	58	+	8.36538	5.68e-05	1	TCACACCTAGTCGCCG
T	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	57	72	-	8.36538	5.68e-05	1	TCACACCTAGTCGCCG
T	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	57	72	-	8.36538	5.68e-05	1	TCACACCTAGTCGCCG
T	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	57	72	-	8.36538	5.68e-05	1	TCACACCTAGTCGCCG
T	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	57	72	-	8.36538	5.68e-05	1	TCACACCTAGTCGCCG
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	92	106	+	8.58571	5.68e-05	0.108	GGCTTCCTGGTGCGC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	106	+	12.1429	5.68e-05	0.172	CACAGCTGTGCTT
KLF16	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	19	29	+	10.8621	5.68e-05	0.0203	GCCACTCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	33	43	+	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	51	61	+	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	62	72	+	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	84	94	+	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	84	94	+	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	21	31	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	21	31	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	23	33	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	25	35	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	34	44	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	54	64	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	57	67	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	57	67	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	57	67	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	57	67	-	10.8621	5.68e-05	0.0203	TCCCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	86	96	-	10.8621	5.68e-05	0.0203	GCCACTCCCCG
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	15	31	-	10.8947	5.68e-05	0.65	TCTGTGACGTCAGAAGA
PAX1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	22	38	+	6.18182	5.68e-05	0.619	CTTCACGCAGGGCTGGC
PAX1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	77	93	-	6.18182	5.68e-05	0.619	CTTCACGCAGGGCTGGC
Barhl1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	75	84	-	9.64151	5.68e-05	1	GCTAAGTGCT
Barhl1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	75	84	-	9.64151	5.68e-05	1	GCTAAGTGCT
Barhl1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	75	84	-	9.64151	5.68e-05	1	GCTAAGTGCT
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	30	39	-	11.7073	5.68e-05	0.472	ATCACATCAC
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	+	11.6415	5.68e-05	1	TGTTACGTCACG
Rarg	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	37	52	+	-1.44898	5.68e-05	0.877	AAATTCAAAAGTTCCT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	52	72	-	9.97959	5.68e-05	0.0179	AGGGGCGGGGCCCGGGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	52	72	-	9.97959	5.68e-05	0.0179	AGGGGCGGGGCCCGGGGAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	52	72	-	9.97959	5.68e-05	0.0179	AGGGGCGGGGCCCGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	52	72	-	9.97959	5.68e-05	0.0179	AGGGGCGGGGCCCGGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	65	85	-	9.97959	5.68e-05	0.0179	GAGAGTGAGGGAGGAAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	65	85	-	9.97959	5.68e-05	0.0179	GAGAGTGAGGGAGGAAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	56	76	+	9.97959	5.68e-05	0.0179	GAGGAAGCACGTGGAGAAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	56	76	+	9.97959	5.68e-05	0.0179	GAGGAAGCACGTGGAGAAGGC
SP4	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	10	26	+	4.45455	5.68e-05	0.028	CTGACCCCTCCTCCCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	22	38	+	4.45455	5.68e-05	0.028	CCCACCCCGCCCTCAGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	22	38	+	4.45455	5.68e-05	0.028	CCCACCCCGCCCTCAGG
SP4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	63	79	+	4.45455	5.68e-05	0.028	CCCACCCCGCCCTCAGG
SP4	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	89	105	-	4.45455	5.68e-05	0.028	CTGACCCCTCCTCCCGC
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	47	63	+	3.78689	5.68e-05	0.563	AGGTCCAATAGGGGGCG
RARA(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	47	63	+	3.78689	5.68e-05	0.563	AGGTCCAATAGGGGGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	11.5345	5.68e-05	0.112	GCCGGATGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	11.5345	5.68e-05	0.112	GCCGGATGTT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	34	46	+	10.7049	5.68e-05	0.0586	TCCCCCAGAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	34	46	+	10.7049	5.68e-05	0.0586	TCCCCCAGAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	34	46	+	10.7049	5.68e-05	0.0586	TCCCCCAGAGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	34	46	+	10.7049	5.68e-05	0.0586	TCCCCCAGAGGCC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	+	10.7049	5.68e-05	0.0586	CGCCCGGCAGGCG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	-	10.7049	5.68e-05	0.0586	CGCCCGGCAGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	-	10.7049	5.68e-05	0.0586	TCCCCCTACGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	101	113	-	10.7049	5.68e-05	0.0586	AGCCGCCGGGGGC
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	-	11.5	5.68e-05	0.0744	CGCCTTCGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	57	67	-	11.5	5.68e-05	0.0744	GGCCTCCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	41	51	+	11.5	5.68e-05	0.0744	CGCCCAGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	41	51	+	11.5	5.68e-05	0.0744	CGCCCAGGGCA
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	48	58	+	11.5	5.68e-05	0.0744	GGCCTCCGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	+	11.5	5.68e-05	0.0744	CGCCTTCGGCT
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	13	33	+	5.60204	5.68e-05	0.219	TTGAGGGCCGTGGGCAGACGC
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	13	33	+	5.60204	5.68e-05	0.219	TTGAGGGCCGTGGGCAGACGC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	65	85	+	5.60204	5.68e-05	0.219	TTGAGGGCCGTGGGCAGACGC
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
ETV6	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	11.6346	5.68e-05	0.102	CCCGGAAGCA
TBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	73	83	+	11.3818	5.68e-05	1	TAAGTGTGAAT
NFYB	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	35	49	+	11.0385	5.68e-05	0.164	GTGTCAGCCAATGGC
NFYB	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	66	80	-	11.0385	5.68e-05	0.164	GTGTCAGCCAATGGC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	-	11.5818	5.69e-05	0.0551	CGCCTTCGGCT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	+	11.5818	5.69e-05	0.0551	CGCCTTCGGCT
NRL	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	55	65	+	11	5.69e-05	0.823	TTTCCGCTGAC
NRL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	81	91	+	11	5.69e-05	0.823	TTTCCGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	87	97	-	11	5.69e-05	0.823	ATTGTGCTGAG
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	87	97	-	11	5.69e-05	0.823	ATTGTGCTGAG
NRF1	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	74	84	+	10.4909	5.69e-05	0.0191	GCCGCTGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	23	33	-	10.4909	5.69e-05	0.0191	GCCCAGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	30	40	-	10.4909	5.69e-05	0.0191	GAGCGTGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	30	40	-	10.4909	5.69e-05	0.0191	GAGCGTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	31	41	-	10.4909	5.69e-05	0.0191	GCCGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	31	41	-	10.4909	5.69e-05	0.0191	GCCGCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	58	68	-	10.4909	5.69e-05	0.0191	GCCGCTGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	58	68	-	10.4909	5.69e-05	0.0191	GCCGCTGCGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	-	10.3793	5.69e-05	0.0554	AGCCTCGGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	-	10.3793	5.69e-05	0.0554	AGCCTCGGAGGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	46	57	+	9.52727	5.69e-05	0.115	TTTCCGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	46	57	+	9.52727	5.69e-05	0.115	TTTCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	46	57	+	9.52727	5.69e-05	0.115	TTTCCGGAAGCG
PKNOX2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	+	3.68852	5.69e-05	0.598	TGGCAGCTGCCT
PKNOX2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	-	3.68852	5.69e-05	0.598	TGGCAGCTGCCT
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	45	58	-	9.1129	5.69e-05	0.731	CCGAAAGGGAAAAG
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	79	92	-	9.1129	5.69e-05	0.731	CCGAAAGGGAAAAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	2	15	-	6.87234	5.69e-05	0.0995	CCCCGCCCGCCGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	2	15	-	6.87234	5.69e-05	0.0995	CCCCGCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	2	15	-	6.87234	5.69e-05	0.0995	CCCCGCCCGCCGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	2	15	-	6.87234	5.69e-05	0.0995	CCCCGCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	11	24	-	6.87234	5.69e-05	0.0995	CGCCCCCCGGTGAC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	11	24	-	6.87234	5.69e-05	0.0995	CGCCCCCCGGTGAC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	11	24	-	6.87234	5.69e-05	0.0995	CGCCCCCCGGTGAC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	11	24	-	6.87234	5.69e-05	0.0995	CGCCCCCCGGTGAC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	11	24	-	6.87234	5.69e-05	0.0995	CGCCCCCCGGTGAC
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	44	54	+	11.8367	5.69e-05	0.344	CTTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	44	54	+	11.8367	5.69e-05	0.344	CTTTCTAGGAA
Npas2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	-	12.2295	5.69e-05	0.333	TGCACGTGCG
Npas2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	+	12.2295	5.69e-05	0.333	TGCACGTGCG
ATF7	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	92	105	-	7.98571	5.69e-05	0.178	TGCTGACGTCAGGG
ATF7	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	39	52	+	7.98571	5.69e-05	0.178	GGATAACGTCATTT
PITX3	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	22	30	+	11.2115	5.69e-05	1	CCTAATCCA
PITX3	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	85	93	-	11.2115	5.69e-05	1	CCTAATCCA
PITX3	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	87	95	-	11.2115	5.69e-05	1	CCTAATCCA
PITX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	96	104	-	11.2115	5.69e-05	1	CTTAATCCT
PITX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	96	104	-	11.2115	5.69e-05	1	CTTAATCCT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	87	100	-	9.57377	5.69e-05	0.365	TTTCCCCGGGGTCC
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	58	69	+	11.0606	5.69e-05	0.109	CCTGGTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	58	69	+	11.0606	5.69e-05	0.109	CCTGGTCCGCGC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	35	46	-	10.9828	5.69e-05	0.365	CGGACCACCCAC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	60	71	+	10.9828	5.69e-05	0.365	CGGACCACCCAC
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	27	37	+	11.8364	5.69e-05	0.721	AGCCTCTCCGG
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	33	46	-	9.01515	5.69e-05	0.303	CTGCCACGTGCCTG
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	69	82	+	9.01515	5.69e-05	0.303	CTGCCACGTGCCTG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	69	82	+	9.01515	5.69e-05	0.303	CTGCCACGTGCCTG
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	69	82	+	9.01515	5.69e-05	0.303	CTGCCACGTGCCTG
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	69	82	+	9.01515	5.69e-05	0.303	CTGCCACGTGCCTG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	68	78	-	12.1633	5.69e-05	0.153	GGCAGGTGGGC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	68	78	-	12.1633	5.69e-05	0.153	GGCAGGTGGGC
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	72	81	-	11.2143	5.69e-05	0.217	CACAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	-	11.2143	5.69e-05	0.217	CACAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	-	11.2143	5.69e-05	0.217	CACAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	-	11.2143	5.69e-05	0.217	CACAGCTGCG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	-	11.2143	5.69e-05	0.217	CACAGCTGCG
Ascl2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	+	11.2143	5.69e-05	0.217	CACAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	73	82	+	11.2143	5.69e-05	0.217	CACAGCTGCA
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	73	82	+	11.2143	5.69e-05	0.217	CACAGCTGCA
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	73	82	+	11.2143	5.69e-05	0.217	CACAGCTGCA
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	32	45	+	11.5769	5.69e-05	0.223	AATGAATGAGTCAA
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	45	58	+	11.5769	5.69e-05	0.223	AATGAATGAGTCAA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	74	87	+	11.5769	5.69e-05	0.223	CAGCTGTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	15	28	-	11.5769	5.69e-05	0.223	GCAAAATGACTAAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	15	28	-	11.5769	5.69e-05	0.223	GCAAAATGACTAAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	57	70	-	11.5769	5.69e-05	0.223	AATGAATGAGTCAA
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	70	83	-	11.5769	5.69e-05	0.223	AATGAATGAGTCAA
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	77	90	-	11.5769	5.69e-05	0.223	GCAAAATGACTAAT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	69	82	-	6.16327	5.69e-05	0.0723	GAGGGCGAGGGAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	24	34	+	11.2623	5.69e-05	0.0604	GCGGAAGGGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	24	34	+	11.2623	5.69e-05	0.0604	GCGGAAGGGGA
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	35	46	-	11.2	5.69e-05	0.217	TCCGCCCACAGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	62	73	-	11.2	5.69e-05	0.217	CTCGCCCACCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	62	73	-	11.2	5.69e-05	0.217	CTCGCCCACCCC
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	42	53	+	11.2	5.69e-05	0.217	CTCGCCCACCCC
ZBTB7A	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	75	86	+	11.2	5.69e-05	0.217	TCCGCCCACAGG
E2F4	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	83	93	-	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	84	94	-	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	21	31	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	22	32	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	71	81	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	71	81	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	71	81	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	72	82	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	72	82	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	72	82	+	11.3276	5.7e-05	0.0475	CGGCGGGGAGA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	37	51	+	6.93103	5.7e-05	0.0393	GCCCGGCCACGCTTC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	37	51	+	6.93103	5.7e-05	0.0393	GCCCGGCCACGCTTC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	37	51	+	6.93103	5.7e-05	0.0393	GCCCGGCCACGCTTC
EGR3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	32	46	-	6.93103	5.7e-05	0.0393	CCCCGCCGCCCCACA
EGR3	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	64	78	-	6.93103	5.7e-05	0.0393	GCCCGGCCACGCTTC
PAX9	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	13	29	+	1.25455	5.7e-05	0.501	GGACTCGCGTGAGTGCG
PAX9	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	47	63	+	1.25455	5.7e-05	0.501	GGACTCGCGTGAGTGCG
PAX9	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	52	68	-	1.25455	5.7e-05	0.501	GGACTCGCGTGAGTGCG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	36	47	+	3.94828	5.7e-05	0.189	TGTCACGTGACG
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	36	47	+	3.94828	5.7e-05	0.189	TGTCACGTGACG
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	76	87	-	3.94828	5.7e-05	0.189	TGTCACGTGACG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	76	87	-	3.94828	5.7e-05	0.189	TGTCACGTGACG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	59	-	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	59	-	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	59	-	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	59	-	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	73	83	+	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	73	83	+	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	73	83	+	11.6182	5.7e-05	0.0624	GCATTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	73	83	+	11.6182	5.7e-05	0.0624	GCATTTCCTGT
E2F6	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	19	29	-	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
E2F6	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	31	41	-	11.6379	5.7e-05	0.0651	TCGCGGGAACC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	60	70	-	11.6379	5.7e-05	0.0651	CGGCGGGAGCG
E2F6	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	14	24	+	11.6379	5.7e-05	0.0651	TCGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	49	59	+	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	49	59	+	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	49	59	+	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	53	63	+	11.6379	5.7e-05	0.0651	TCGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	53	63	+	11.6379	5.7e-05	0.0651	TCGCGGGAGCG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	53	63	+	11.6379	5.7e-05	0.0651	TCGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	62	72	+	11.6379	5.7e-05	0.0651	CGGCGGGAGCG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	68	78	+	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	68	78	+	11.6379	5.7e-05	0.0651	AAGAGGGAAGA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	-	11.1455	5.7e-05	0.21	GCTGAGTCAGT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	+	11.1455	5.7e-05	0.21	GCTGAGTCAGT
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	27	36	-	11.2069	5.7e-05	0.129	CCCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	27	36	-	11.2069	5.7e-05	0.129	CCCAGCTGAG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	69	78	-	11.2069	5.7e-05	0.129	CCCAGCTGAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	54	71	+	-12.7237	5.7e-05	0.0495	GGAGGGAGGGGCGGCGAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	44	61	-	-12.7237	5.7e-05	0.0495	GGAGGGAGGGGCGGCGAA
ETV3	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	11.4366	5.7e-05	0.138	TCCGGAAGTT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	11.4366	5.7e-05	0.138	TCCGGAAGTT
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	11.4366	5.7e-05	0.138	TCCGGAAGTT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	8.63462	5.7e-05	0.181	AACACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	8.63462	5.7e-05	0.181	AACACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	8.63462	5.7e-05	0.181	AACACGTGAG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	8.63462	5.7e-05	0.181	AACACGTGAG
BHLHE41	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	8.63462	5.7e-05	0.181	AACACGTGAG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	84	95	+	10.623	5.7e-05	0.128	GAGCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	84	95	+	10.623	5.7e-05	0.128	GAGCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	84	95	+	10.623	5.7e-05	0.128	GAGCAGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	84	95	+	10.623	5.7e-05	0.128	GAGCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	84	95	+	10.623	5.7e-05	0.128	GAGCAGGAAGTC
EHF	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	20	31	-	10.623	5.7e-05	0.128	GAGCAGGAAGTC
Klf12	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	7	21	+	8.77049	5.7e-05	0.0627	GACCCCGCGCTTCCG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	15	29	-	8.77049	5.7e-05	0.0627	CGCCCCGCCCCTTGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	17	31	-	8.77049	5.7e-05	0.0627	AGCCCCGCCCCAGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	17	31	-	8.77049	5.7e-05	0.0627	AGCCCCGCCCCAGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	17	31	-	8.77049	5.7e-05	0.0627	AGCCCCGCCCCAGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	17	31	-	8.77049	5.7e-05	0.0627	AGCCCCGCCCCAGCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	29	43	-	8.77049	5.7e-05	0.0627	AGCCCCACCCAGTTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	52	66	-	8.77049	5.7e-05	0.0627	CGCCCCGCCCCTCGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	52	66	-	8.77049	5.7e-05	0.0627	CGCCCCGCCCCTCGT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	52	66	-	8.77049	5.7e-05	0.0627	CGCCCCGCCCCTCGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	52	66	-	8.77049	5.7e-05	0.0627	CGCCCCGCCCCTCGT
Klf12	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	72	86	+	8.77049	5.7e-05	0.0627	AGCCCCACCCAGTTC
MNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	77	86	-	10.6716	5.7e-05	1	AGTAATTAGA
MNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	77	86	-	10.6716	5.7e-05	1	AGTAATTAGA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	26	37	+	11.1184	5.7e-05	0.0309	CCAACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	26	37	+	11.1184	5.7e-05	0.0309	CCAACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	26	37	+	11.1184	5.7e-05	0.0309	CCAACGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	26	37	+	11.1184	5.7e-05	0.0309	CCAACGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	30	41	+	11.1184	5.7e-05	0.0309	GCTCCCCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	30	41	+	11.1184	5.7e-05	0.0309	GCTCCCCCCACT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	30	41	+	11.1184	5.7e-05	0.0309	GCTCCCCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	30	41	+	11.1184	5.7e-05	0.0309	GCTCCCCCCACT
SP8	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	20	31	-	11.1184	5.7e-05	0.0309	ACCCCGCCCTCC
SP8	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	84	95	+	11.1184	5.7e-05	0.0309	ACCCCGCCCTCC
SP8	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	95	106	+	11.1184	5.7e-05	0.0309	ACCACGCCCGGC
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	42	55	-	9.09091	5.7e-05	0.383	GGGGCCGAAGGCCA
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	18	33	+	10.5818	5.7e-05	0.039	GCCCACCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	18	33	+	10.5818	5.7e-05	0.039	GCCCACCCCCGCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	18	33	+	10.5818	5.7e-05	0.039	GCCCACCCCCGCCCCG
EGR4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	53	68	+	10.5818	5.7e-05	0.039	CTCCGCCCATCCCACG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	47	62	-	10.5818	5.7e-05	0.039	CTCCGCCCATCCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	47	62	-	10.5818	5.7e-05	0.039	CTCCGCCCATCCCACG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	47	62	-	10.5818	5.7e-05	0.039	CTCCGCCCATCCCACG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	47	62	-	10.5818	5.7e-05	0.039	CTCCGCCCATCCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	55	70	-	10.5818	5.7e-05	0.039	CGCCGCCGCCGCATCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	55	70	-	10.5818	5.7e-05	0.039	CGCCGCCGCCGCATCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	82	97	-	10.5818	5.7e-05	0.039	GCCCACCCCCGCCCCG
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	+	11.7885	5.7e-05	0.274	CACACGTGCT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	+	11.7885	5.7e-05	0.274	CACACGTGCT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	81	101	+	9.3871	5.7e-05	0.184	CTTCTTTTCCTCTTTCAGGTT
BATF3	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	51	64	+	1.59091	5.7e-05	0.198	TCCTGACGTCACGC
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	51	64	-	1.59091	5.7e-05	0.198	TCCTGACGTCACGC
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	51	64	-	1.59091	5.7e-05	0.198	TCCTGACGTCACGC
MAFK	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	80	94	+	11.4444	5.7e-05	1	ACACGTCAGCACAAC
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	21	35	-	11.4444	5.7e-05	1	ACACGTCAGCACAAC
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	21	35	-	11.4444	5.7e-05	1	ACACGTCAGCACAAC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	19	32	-	11.1818	5.7e-05	0.0577	TCCTGCCCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	19	32	-	11.1818	5.7e-05	0.0577	TCCTGCCCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	19	32	-	11.1818	5.7e-05	0.0577	TCCTGCCCGGCCTT
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	19	32	-	11.1818	5.7e-05	0.0577	TCCTGCCCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	19	32	-	11.1818	5.7e-05	0.0577	TCCTGCCCGGCCTT
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	14	23	+	11.3286	5.71e-05	0.104	GCCGGAACTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	14	23	+	11.3286	5.71e-05	0.104	GCCGGAACTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	14	23	+	11.3286	5.71e-05	0.104	GCCGGAACTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	14	23	+	11.3286	5.71e-05	0.104	GCCGGAACTG
ERF	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	85	94	+	11.3286	5.71e-05	0.104	GCCGGAACTG
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	18	27	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	25	34	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	28	37	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	47	56	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	54	63	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	54	63	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	54	63	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	69	78	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	74	83	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	100	109	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	102	111	+	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	4	13	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	6	15	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	13	22	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	26	35	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	32	41	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	33	42	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	40	49	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	43	52	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
ZNF740	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	78	87	-	10.9266	5.71e-05	0.0553	CCCCCCACCC
HOXA13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	3	12	+	11.625	5.71e-05	1	CCCATAAAAG
HOXA13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	3	12	+	11.625	5.71e-05	1	CCCATAAAAG
SP2	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	12	26	-	10.7759	5.71e-05	0.0133	CCCCCACCTTTCCTC
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	25	39	-	10.7759	5.71e-05	0.0133	TTCCTGCCTCCTCTC
ELF4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	22	33	+	9.54098	5.71e-05	0.103	AAGGAGGAAGTG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	89	-	9.54098	5.71e-05	0.103	AAGGAGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	93	-	9.54098	5.71e-05	0.103	AAGGAGGAAGTG
SP4	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	29	45	+	4.43636	5.71e-05	0.0281	ACCGCCCCGCCCCGCGC
SP4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	72	88	+	4.43636	5.71e-05	0.0281	TGCGCCACGCCCGCAGG
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	8	26	-	10.9194	5.71e-05	0.674	TGGCTGGAAGTTCCCTCGC
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	90	108	+	10.9194	5.71e-05	0.674	TGGCCTGGGGAGAACTGCC
GLI2	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	17	28	+	10.7241	5.71e-05	0.33	GCGCCCACGCGC
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	87	98	-	10.7241	5.71e-05	0.33	GCGCCCACGCGC
NR2C2	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	68	82	+	9.77143	5.71e-05	0.122	GCGGTGGAGGGGGCA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	16	26	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	16	26	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	55	65	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	55	65	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	55	65	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	55	65	+	11.2459	5.71e-05	0.0604	ACGGAAGCGGA
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	57	-	11.7419	5.71e-05	1	AACAGATGGT
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	57	-	11.7419	5.71e-05	1	AACAGATGGT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	26	35	+	11.5577	5.71e-05	0.157	GCCACATGCC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	30	39	-	11.5577	5.71e-05	0.157	GCCACATGCC
GSC2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	63	72	+	10.8136	5.71e-05	1	GTTAATCCCA
GSC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	99	108	-	10.8136	5.71e-05	1	CCTAATCCCG
GSC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	99	108	-	10.8136	5.71e-05	1	CCTAATCCCG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	64	76	+	11.1148	5.71e-05	0.359	AAGGCTGACACAT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	64	76	+	11.1148	5.71e-05	0.359	AAGGCTGACACAT
NFATC1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	47	56	+	10.6423	5.71e-05	0.956	AGTTTCCATC
Ar	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	60	76	-	7.15517	5.71e-05	0.882	AGGAACCGTGAGTACCA
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	47	57	-	11.6809	5.71e-05	0.232	TCTTACTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	47	57	-	11.6809	5.71e-05	0.232	TCTTACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	47	57	-	11.6809	5.71e-05	0.232	TCTTACTCATG
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	47	57	-	11.6809	5.71e-05	0.232	TCTTACTCATG
FOS	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	98	108	+	11.6809	5.71e-05	0.232	TCTGAGTCAGG
Creb5	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	16	27	+	9.25455	5.72e-05	0.212	CATGACATCAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	88	99	-	9.25455	5.72e-05	0.212	CATGACATCAGC
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	88	99	-	9.25455	5.72e-05	0.212	CATGACATCAGC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	21	32	-	11.5273	5.72e-05	0.0555	TCCCCCAAGCCT
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	-	11.5273	5.72e-05	0.0555	AGCCCAGAGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	90	101	-	11.5273	5.72e-05	0.0555	TGCCTCGAGCCG
EBF1	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	26	39	-	9.55738	5.72e-05	0.365	AGCCCCCAGGGCGT
GSC	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	17	26	+	11.3019	5.72e-05	1	GATAATCCGT
GSC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	89	98	-	11.3019	5.72e-05	1	GATAATCCGT
GSC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	89	98	-	11.3019	5.72e-05	1	GATAATCCGT
Hes1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	10.0629	5.72e-05	0.0997	GCCACGTGCT
Hes1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	10.0629	5.72e-05	0.0997	GCCACGTGCT
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	10.0629	5.72e-05	0.0997	GCCACGTGCT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	10.0629	5.72e-05	0.0997	GCCACGTGCT
ELF3	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	59	71	+	8.75862	5.72e-05	0.162	CACCAGGAAGAAT
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	7	18	-	3.22449	5.72e-05	1	TGACAGTTCTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	7	18	-	3.22449	5.72e-05	1	TGACAGTTCTCA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	11.6207	5.72e-05	0.107	TCCGGAAGCG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	11.6207	5.72e-05	0.107	TCCGGAAGCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	11.6207	5.72e-05	0.107	TCCGGAAGCG
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	11.6207	5.72e-05	0.107	TCCGGAAGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	10	20	+	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	10	20	+	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	31	41	+	9.86207	5.72e-05	0.0818	CCGCGCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	28	38	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	51	61	+	9.86207	5.72e-05	0.0818	CCGCGCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	71	81	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	80	90	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	98	108	+	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	101	111	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	103	113	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	103	113	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	103	113	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	103	113	-	9.86207	5.72e-05	0.0818	CCGCCTCCGCC
ETV5	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	12	21	-	11.4	5.72e-05	0.111	AGCGGATGTT
ETV5	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	70	79	+	11.4	5.72e-05	0.111	AGCGGATGTT
EGR1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	20	33	-	10.6346	5.72e-05	0.0228	GCCCCTCCCTCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	13	26	+	10.6346	5.72e-05	0.0228	GCCCCGCTGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	55	68	+	10.6346	5.72e-05	0.0228	GCCCCGCTGCCGCT
EGR1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	95	+	10.6346	5.72e-05	0.0228	GCCCCTCCCTCTGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	19	31	+	10.6885	5.72e-05	0.0586	AGCCCCAGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	19	31	+	10.6885	5.72e-05	0.0586	AGCCCCAGCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	62	74	+	10.6885	5.72e-05	0.0586	AGCCCCAGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	62	74	+	10.6885	5.72e-05	0.0586	AGCCCCAGCGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	96	-	10.6885	5.72e-05	0.0586	AGCCCCAGCGGCG
IRF2	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	80	97	+	5.72477	5.72e-05	0.626	AGAAAGCAAAAGTATTTC
USF2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	12	-	11.6122	5.72e-05	0.143	GGCACGTGACG
USF2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	91	-	11.6122	5.72e-05	0.143	GGCACGTGACG
USF2	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	20	30	+	11.6122	5.72e-05	0.143	CCCATGTGGTC
USF2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	34	+	11.6122	5.72e-05	0.143	GGCACGTGACG
USF2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	113	+	11.6122	5.72e-05	0.143	GGCACGTGACG
GBX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.6119	5.72e-05	1	ACTAATTAGA
CDX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	49	57	-	11.2075	5.72e-05	1	GCAATAAAG
CDX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	49	57	-	11.2075	5.72e-05	1	GCAATAAAG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	1	10	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	1	10	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	10	19	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	17	26	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	10	19	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	19	28	+	9.98387	5.72e-05	0.0455	AGCTCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	25	34	+	9.98387	5.72e-05	0.0455	AGCGCGAGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	26	35	+	9.98387	5.72e-05	0.0455	AGCGCGAGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	17	26	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	19	28	-	9.98387	5.72e-05	0.0455	GGCGCGAGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	29	38	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	32	41	+	9.98387	5.72e-05	0.0455	AGCTCGCGCC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	25	34	-	9.98387	5.72e-05	0.0455	GGCTCGCGCT
Tcfl5	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	26	35	-	9.98387	5.72e-05	0.0455	GGCTCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	29	38	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	39	48	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	32	41	-	9.98387	5.72e-05	0.0455	GGCGCGAGCT
Tcfl5	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	41	50	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	39	48	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	41	50	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	59	68	+	9.98387	5.72e-05	0.0455	GGCTCGCGCT
Tcfl5	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	65	74	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	59	68	-	9.98387	5.72e-05	0.0455	AGCGCGAGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	65	74	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	74	83	+	9.98387	5.72e-05	0.0455	GGCGCGAGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	76	85	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	76	85	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	76	85	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	76	85	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	77	86	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	80	89	+	9.98387	5.72e-05	0.0455	GGCTCGCGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	81	90	+	9.98387	5.72e-05	0.0455	GGCTCGCGCT
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	74	83	-	9.98387	5.72e-05	0.0455	AGCTCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	76	85	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	76	85	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	76	85	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	76	85	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	77	86	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	87	96	+	9.98387	5.72e-05	0.0455	GGCGCGAGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	80	89	-	9.98387	5.72e-05	0.0455	AGCGCGAGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	81	90	-	9.98387	5.72e-05	0.0455	AGCGCGAGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	87	96	-	9.98387	5.72e-05	0.0455	AGCTCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	96	105	+	9.98387	5.72e-05	0.0455	GCCGCGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	96	105	-	9.98387	5.72e-05	0.0455	GCCGCGCGGC
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	8	17	-	11.7818	5.72e-05	0.721	GTGACGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	8	17	-	11.7818	5.72e-05	0.721	GTGACGCAAT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	33	42	-	11.7818	5.72e-05	0.721	CTTGCGAAAC
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	33	42	-	11.7818	5.72e-05	0.721	CTTGCGAAAC
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	33	42	-	11.7818	5.72e-05	0.721	CTTGCGAAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	33	42	-	11.7818	5.72e-05	0.721	CTTGCGAAAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	33	42	-	11.7818	5.72e-05	0.721	CTTGCGAAAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	34	43	-	11.7818	5.72e-05	0.721	GTGACGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	61	70	+	11.7818	5.72e-05	0.721	GTGACGCAAT
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	13	23	+	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr11:62622801..62622915,-__185.1.0.0	43	53	+	11.5	5.72e-05	0.521	TAATCTCTGCT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	63	73	+	11.5	5.72e-05	0.521	GAATCAGAGCT
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	63	73	+	11.5	5.72e-05	0.521	GAATCAGAGCT
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	64	74	+	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	41	51	-	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	41	51	-	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	41	51	-	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	41	51	-	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	57	67	-	11.5	5.72e-05	0.521	GAATCAGAGCT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	57	67	-	11.5	5.72e-05	0.521	GAATCAGAGCT
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	92	102	-	11.5	5.72e-05	0.521	AAATCACTGGT
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	100	110	-	11.5	5.72e-05	0.521	GAACCACAGCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	35	45	+	10.8448	5.72e-05	0.0204	ACCAAACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	53	+	10.8448	5.72e-05	0.0204	GCACCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	31	41	-	10.8448	5.72e-05	0.0204	GCACCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	62	72	-	10.8448	5.72e-05	0.0204	GCACCGCCCCT
HINFP	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	24	35	-	11.0455	5.72e-05	0.109	CAACCTCCGCCC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	31	42	-	11.0455	5.72e-05	0.109	GGGCGTGCGCGG
HINFP	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	79	90	+	11.0455	5.72e-05	0.109	CAACCTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	84	95	-	11.0455	5.72e-05	0.109	CCCGGTCCGCCT
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	84	95	-	11.0455	5.72e-05	0.109	CCCGGTCCGCCT
RXRB	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	17	30	-	1.34545	5.72e-05	0.515	GAGGTGAGAGTTCC
RXRB	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	86	99	+	1.34545	5.72e-05	0.515	GAGGTGAGAGTTCC
RXRB	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	86	99	+	1.34545	5.72e-05	0.515	GAGGTGAGAGTTCC
RXRB	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	86	99	+	1.34545	5.72e-05	0.515	GAGGTGAGAGTTCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	12	22	+	11.4182	5.72e-05	0.0702	AGCCGCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	-	11.4182	5.72e-05	0.0702	GGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	-	11.4182	5.72e-05	0.0702	GGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	-	11.4182	5.72e-05	0.0702	GGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	-	11.4182	5.72e-05	0.0702	GGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	-	11.4182	5.72e-05	0.0702	CGCCGGGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	-	11.4182	5.72e-05	0.0702	CGCCGGGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	-	11.4182	5.72e-05	0.0702	GGCCTCGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	93	103	-	11.4182	5.72e-05	0.0702	AGCCGCAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	-	11.4182	5.72e-05	0.0702	CGCCGGGGGCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	15	26	+	11.4286	5.72e-05	0.0866	CGCCTGGAGGGA
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	23	34	+	11.4286	5.72e-05	0.0866	CGCCTGGAGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	23	34	+	11.4286	5.72e-05	0.0866	CGCCTGGAGGGA
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	84	95	+	11.4286	5.72e-05	0.0866	TGCCCCTGGGCC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	+	11.4286	5.72e-05	0.0866	GGCCCCGGGGCC
TFAP2C	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	89	100	-	11.4286	5.72e-05	0.0866	CGCCTGGAGGGA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	-	11.4286	5.72e-05	0.0866	GGCCCCGGGGCC
Gata4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.1.0	68	78	-	11.9483	5.72e-05	1	CTTTATCTGTC
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	74	84	+	11.1633	5.73e-05	0.531	CCTGCTGGTGC
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	74	84	+	11.1633	5.73e-05	0.531	CCTGCTGGTGC
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	74	84	+	11.1633	5.73e-05	0.531	CCTGCTGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	97	107	+	11.1633	5.73e-05	0.531	CCTGCTGGTGC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	97	107	+	11.1633	5.73e-05	0.531	CCTGCTGGTGC
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	104	114	+	11.1633	5.73e-05	0.531	TGTGCGGGTCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	68	82	-	10.1364	5.73e-05	0.31	AAGAATGAGTGAGGA
Mafb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	81	92	+	11.5281	5.73e-05	0.865	TTTTCGCTGACG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	-	10.3621	5.73e-05	0.0554	TGCCCTTTAGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	-	10.3621	5.73e-05	0.0554	GCCCCAGAGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	-	10.3621	5.73e-05	0.0554	GCCCCAGAGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	+	10.3621	5.73e-05	0.0554	GGCCTCCGAGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	+	10.3621	5.73e-05	0.0554	GGCCTCCGAGGCT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	87	99	-	10.3621	5.73e-05	0.0554	AGCCCCGCCGGCC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	87	97	+	11.6122	5.73e-05	0.204	GAGTGATTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	22	32	-	11.6122	5.73e-05	0.204	GAGTGATTCAT
Foxj3	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	41	57	+	11.5065	5.73e-05	1	AAATAATAAATAAAAAA
Foxj3	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	58	74	-	11.5065	5.73e-05	1	AAATAATAAATAAAAAA
Sox6	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	2	11	+	12.2286	5.73e-05	0.762	TCTTTGTCTC
Sox6	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	85	94	-	12.2286	5.73e-05	0.762	GCTTTGTTTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	9	23	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	9	23	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	10	24	+	6.91379	5.73e-05	0.0393	GCCCGCCCCCTCTGA
EGR3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	11	25	-	6.91379	5.73e-05	0.0393	GCCCGCCGCCGCGGA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	34	48	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	34	48	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	34	48	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	53	67	+	6.91379	5.73e-05	0.0393	GCCCGCCGCCGCGGA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	53	67	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	53	67	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	53	67	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	53	67	+	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	48	62	-	6.91379	5.73e-05	0.0393	GCCCGCCGCCGCGGA
EGR3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	67	81	-	6.91379	5.73e-05	0.0393	CCCCGCCCCTGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	90	104	+	6.91379	5.73e-05	0.0393	GCCCGCCGCCGCGGA
EGR3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	91	105	-	6.91379	5.73e-05	0.0393	GCCCGCCCCCTCTGA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	24	34	+	11.2424	5.73e-05	0.0469	GGCCTCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	24	34	+	11.2424	5.73e-05	0.0469	GGCCTCACCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	41	51	+	11.2424	5.73e-05	0.0469	GGCCTCACCCT
CEBPD	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	39	48	+	11.7308	5.73e-05	0.805	CTGGCGCAAC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	12	+	10.8265	5.73e-05	0.309	AGGCACGTGCC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	12	+	10.8265	5.73e-05	0.309	AGGCACGTGCC
RAX	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	11.2034	5.73e-05	1	ATTAATTAAC
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	15	29	-	10.6727	5.73e-05	0.109	TGCCCCACGCGGCTG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	15	29	-	10.6727	5.73e-05	0.109	TGCCCCACGCGGCTG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	53	67	-	10.6727	5.73e-05	0.109	CCGCCCCCGCCGCGA
ZIC4	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	86	100	+	10.6727	5.73e-05	0.109	TGCCCCACGCGGCTG
MTF1	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	71	84	-	6.7561	5.73e-05	0.5	TCTGCAAACAGCAT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	22	34	-	10.4918	5.73e-05	0.0641	GGCCTGCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	22	34	-	10.4918	5.73e-05	0.0641	GGCCTGCGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	22	34	-	10.4918	5.73e-05	0.0641	GGCCTGCGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	22	34	-	10.4918	5.73e-05	0.0641	GGCCTGCGGGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	-	10.4918	5.73e-05	0.0641	TCCCCAGCGGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	34	46	-	10.4918	5.73e-05	0.0641	GCCCTTTGGGGCG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	69	81	+	10.4918	5.73e-05	0.0641	GCCCTTTGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	66	78	-	10.4918	5.73e-05	0.0641	CGCCCAAAGGGCG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	61	75	+	9.98485	5.73e-05	0.306	TAACTTTCTGTTGCT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	61	75	+	9.98485	5.73e-05	0.306	TAACTTTCTGTTGCT
STAT1::STAT2	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	84	98	+	9.98485	5.73e-05	0.306	TCAGCTTCTGTTCCT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.1	3	17	-	9.98485	5.73e-05	0.306	TAACTTTCTGTTGCT
STAT1::STAT2	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	17	31	-	9.98485	5.73e-05	0.306	TCAGCTTCTGTTCCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	5	17	-	12.1224	5.73e-05	0.172	TCCACCTGCCTGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	5	17	-	12.1224	5.73e-05	0.172	TCCACCTGCCTGC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	31	43	-	12.1224	5.73e-05	0.172	CCCAGCTGCCAAT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	91	103	-	12.1224	5.73e-05	0.172	TTCAGCTGCGGCC
SPIC	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	33	46	+	11.1408	5.73e-05	0.254	GACAAACGGACGTA
SPIC	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	84	97	+	11.1408	5.73e-05	0.254	AGGAAGAGGACGAA
SPIC	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	18	31	-	11.1408	5.73e-05	0.254	AGGAAGAGGACGAA
SPIC	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	69	82	-	11.1408	5.73e-05	0.254	GACAAACGGACGTA
TFAP2B	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	+	11.4909	5.73e-05	0.0893	CCCCTGGGGGCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	79	90	+	11.4909	5.73e-05	0.0893	CACCCTCGGGCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	-	11.4909	5.73e-05	0.0893	CCCCTGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	-	11.4909	5.73e-05	0.0893	CCCCTGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	-	11.4909	5.73e-05	0.0893	CCCCTGGGGGCG
NKX2-3	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	20	29	+	11.8077	5.73e-05	1	CCCACTTGTC
NKX2-3	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	45	54	+	11.8077	5.73e-05	1	CCCACTTGTC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	14	28	-	7.82895	5.73e-05	0.239	CCTGTGAGTCACCAC
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	33	47	+	7.82895	5.73e-05	0.239	CCTGTGAGTCACCAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	96	110	-	7.82895	5.73e-05	0.239	AGCGCGAGGCAGCAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	96	110	-	7.82895	5.73e-05	0.239	AGCGCGAGGCAGCAT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	24	34	-	11.5345	5.73e-05	0.275	ACTTGTGGTTA
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	70	80	+	11.5345	5.73e-05	0.275	ACTTGTGGTTA
Klf4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	27	36	-	11.0816	5.73e-05	0.0217	TGGGCGTGAC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	37	-	11.6	5.73e-05	0.0624	TGACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	86	96	-	11.6	5.73e-05	0.0624	CCCCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	86	96	-	11.6	5.73e-05	0.0624	CCCCTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	86	96	-	11.6	5.73e-05	0.0624	CCCCTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	10	20	+	11.6	5.73e-05	0.0624	CCCCTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	10	20	+	11.6	5.73e-05	0.0624	CCCCTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	10	20	+	11.6	5.73e-05	0.0624	CCCCTTCCGCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	21	+	11.2885	5.73e-05	0.0151	ACCCCTCCCAT
SP1	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	2	12	-	11.2885	5.73e-05	0.0151	CTCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	13	23	+	11.2885	5.73e-05	0.0151	AGCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	13	23	+	11.2885	5.73e-05	0.0151	AGCCCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	5	15	-	11.2885	5.73e-05	0.0151	GCTCCTCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	5	15	-	11.2885	5.73e-05	0.0151	GCTCCTCCTCG
SP1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	20	30	+	11.2885	5.73e-05	0.0151	ACCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	31	41	+	11.2885	5.73e-05	0.0151	TCCCCTCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	31	41	+	11.2885	5.73e-05	0.0151	TCCCCTCCCTG
SP1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	34	44	+	11.2885	5.73e-05	0.0151	CTCCCACCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	34	44	+	11.2885	5.73e-05	0.0151	GCTCCTCCTCG
SP1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	34	44	+	11.2885	5.73e-05	0.0151	AGCCCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	43	53	+	11.2885	5.73e-05	0.0151	CGCCCGCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	51	61	+	11.2885	5.73e-05	0.0151	TCCCCTCCCTG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	74	84	-	11.2885	5.73e-05	0.0151	TCCCCTCCCTG
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	86	96	+	11.2885	5.73e-05	0.0151	CCCCCACCTTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	86	96	+	11.2885	5.73e-05	0.0151	CCCCCACCTTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	86	96	+	11.2885	5.73e-05	0.0151	CCCCCACCTTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	86	96	+	11.2885	5.73e-05	0.0151	CCCCCACCTTC
SP1	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	103	113	+	11.2885	5.73e-05	0.0151	CTCCCACCCTC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.1.0	17	35	+	9.08197	5.73e-05	0.118	CATGCAGAAGAGGGCGGAT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.0.0	17	35	+	9.08197	5.73e-05	0.118	CATGCAGAAGAGGGCGGAT
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.1	17	35	+	9.08197	5.73e-05	0.118	CATGCAGAAGAGGGCGGAT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.0	17	35	+	9.08197	5.73e-05	0.118	CATGCAGAAGAGGGCGGAT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.2.0	17	35	+	9.08197	5.73e-05	0.118	CATGCAGAAGAGGGCGGAT
ETV2	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	91	101	-	10.8361	5.73e-05	0.167	GACCGGATGTC
ETV2	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	14	24	+	10.8361	5.73e-05	0.167	GACCGGATGTC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	72	82	+	11.8182	5.74e-05	0.721	AGCCTCTCAAT
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	72	82	+	11.8182	5.74e-05	0.721	AGCCTCTCAAT
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	72	82	+	11.8182	5.74e-05	0.721	AGCCTCTCAAT
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	72	82	+	11.8182	5.74e-05	0.721	AGCCTCTCAAT
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	72	82	+	11.8182	5.74e-05	0.721	AGCCTCTCAAT
E2F4	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	55	65	+	11.3103	5.74e-05	0.0477	CAGCGGGAGAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	19	35	+	4.41818	5.74e-05	0.0281	CCCGCCCCTCCCTCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	3	19	-	4.41818	5.74e-05	0.0281	CCCGCCCCGCCCGCCGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	3	19	-	4.41818	5.74e-05	0.0281	CCCGCCCCGCCCGCCGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	3	19	-	4.41818	5.74e-05	0.0281	CCCGCCCCGCCCGCCGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	3	19	-	4.41818	5.74e-05	0.0281	CCCGCCCCGCCCGCCGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	16	32	-	4.41818	5.74e-05	0.0281	GCAGCCCCGCGCCCCGG
SP4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	33	49	+	4.41818	5.74e-05	0.0281	CGCGCCCCGCCCCGGCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	47	63	+	4.41818	5.74e-05	0.0281	CCAGCTCCGCCCCGCGC
SP4	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	52	68	-	4.41818	5.74e-05	0.0281	CCAGCTCCGCCCCGCGC
SP4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	66	82	-	4.41818	5.74e-05	0.0281	CGCGCCCCGCCCCGGCC
SP4	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	71	87	-	4.41818	5.74e-05	0.0281	CCCGCCCCGCCCGCCGG
Esrrg	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	45	54	-	11.3469	5.74e-05	0.878	TCAAGGTCGG
Esrrg	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	45	54	-	11.3469	5.74e-05	0.878	TCAAGGTCGG
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	-	11.9394	5.74e-05	0.279	ATCACGTGCG
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	+	11.9394	5.74e-05	0.279	ATCACGTGCG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	34	+	11.9394	5.74e-05	0.279	CTCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	34	+	11.9394	5.74e-05	0.279	CTCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	34	+	11.9394	5.74e-05	0.279	CTCACGTGAC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	28	37	+	11.9394	5.74e-05	0.279	CTCACGTGAC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	42	+	11.9394	5.74e-05	0.279	CTCACGTGAC
Klf1	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	14	24	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	27	37	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	27	37	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	27	37	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	29	39	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	37	47	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	51	61	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	77	87	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	95	105	+	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	9	19	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	10	20	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	14	24	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	28	38	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	54	64	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	78	88	-	11.2273	5.74e-05	0.0469	GGCTCCGCCCT
Nr2e1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	51	59	+	11.6613	5.74e-05	1	AAAAGTCAG
Nr2e1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	51	59	+	11.6613	5.74e-05	1	AAAAGTCAG
Nr2e1	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	56	64	-	11.6613	5.74e-05	1	AAAAGTCAG
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr3:171543354..171543468,-__2092.1.0.0	21	31	-	11.7959	5.74e-05	0.79	ATTTCACAATG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	26	37	-	7.30612	5.74e-05	0.188	AGTGACATCATT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	26	37	-	7.30612	5.74e-05	0.188	AGTGACATCATT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	26	37	-	7.30612	5.74e-05	0.188	AGTGACATCATT
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	26	37	-	7.30612	5.74e-05	0.188	AGTGACATCATT
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	26	37	-	7.30612	5.74e-05	0.188	AGTGACATCATT
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	26	-	9.95918	5.74e-05	0.0181	AGGGATGCGAGGGGGTGGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	73	93	-	9.95918	5.74e-05	0.0181	AGAAGAGGAAAAAAAAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	8	28	+	9.95918	5.74e-05	0.0181	AGGGAAGGGGTGGGGGATGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	8	28	+	9.95918	5.74e-05	0.0181	AGGGAAGGGGTGGGGGATGGT
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	22	42	+	9.95918	5.74e-05	0.0181	AGAAGAGGAAAAAAAAAAAAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	45	65	+	9.95918	5.74e-05	0.0181	GGGGGAACCGTAAAGGGGAAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	11	24	+	9.22414	5.74e-05	0.0337	ATCCCCGCCCACCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	11	24	+	9.22414	5.74e-05	0.0337	ATCCCCGCCCACCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	11	24	+	9.22414	5.74e-05	0.0337	ATCCCCGCCCACCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	11	24	+	9.22414	5.74e-05	0.0337	ATCCCCGCCCACCG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	27	40	+	9.22414	5.74e-05	0.0337	GGCTCCGCCCTCAT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	27	40	+	9.22414	5.74e-05	0.0337	GGCTCCGCCCTCAT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	27	40	+	9.22414	5.74e-05	0.0337	GGCTCCGCCCTCAT
KLF14	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	31	44	-	9.22414	5.74e-05	0.0337	GGTCACGCTCCTCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	36	49	-	9.22414	5.74e-05	0.0337	GGTCACGCTCCTCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	66	79	+	9.22414	5.74e-05	0.0337	GGTCACGCTCCTCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	71	84	+	9.22414	5.74e-05	0.0337	GGTCACGCTCCTCC
KLF14	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	75	88	-	9.22414	5.74e-05	0.0337	GGCTCCGCCCTCAT
ELF5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	23	-	11.5273	5.74e-05	0.139	TCCCGGAAGCC
ELF5	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	30	40	+	11.5273	5.74e-05	0.139	TCCCGGAAGCC
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	52	62	-	11.5273	5.74e-05	0.139	ACCCGGAACTA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	52	62	-	11.5273	5.74e-05	0.139	ACCCGGAACTA
ELF5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	92	102	+	11.5273	5.74e-05	0.139	TCCCGGAAGCC
SP3	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	35	45	+	11.2602	5.74e-05	0.0216	GCGCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	60	70	+	11.2602	5.74e-05	0.0216	GCGCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	45	55	-	11.2602	5.74e-05	0.0216	GCGCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	61	71	-	11.2602	5.74e-05	0.0216	ACGACGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	61	71	-	11.2602	5.74e-05	0.0216	ACGACGCCCAC
NR2C2	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	5	19	+	9.75714	5.74e-05	0.122	GTGGGGCAGAGGCTG
NR2C2	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	96	110	-	9.75714	5.74e-05	0.122	GTGGGGCAGAGGCTG
MEF2D	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	81	92	+	7.2	5.74e-05	0.978	GCCATAAATAAC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	39	48	+	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	39	48	+	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	70	79	+	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	36	45	-	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	36	45	-	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	67	76	-	11.6154	5.74e-05	0.102	GGGGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.5862	5.75e-05	0.126	CCCGGAAGTT
ETV4	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.5862	5.75e-05	0.126	CCCGGAAGTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	54	67	-	11.1667	5.75e-05	0.0579	CGGGTTACGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	54	67	-	11.1667	5.75e-05	0.0579	CGGGTTACGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	89	102	-	11.1667	5.75e-05	0.0579	GGGAGTCGGGCCTT
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	67	77	-	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	67	77	-	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	67	77	-	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	67	77	-	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	50	60	+	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	50	60	+	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	50	60	+	11.0606	5.75e-05	1	TTGGTGTGAAT
TBX20	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	50	60	+	11.0606	5.75e-05	1	TTGGTGTGAAT
HOXD12	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	12	22	-	11.2295	5.75e-05	1	TGTCGTAAACC
HOXD12	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	93	103	+	11.2295	5.75e-05	1	TGTCGTAAACC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	32	42	+	11.5918	5.75e-05	0.204	GCATGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	46	56	-	11.5918	5.75e-05	0.204	GCATGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	46	56	-	11.5918	5.75e-05	0.204	GCATGAGTCAC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.0	2	21	+	4.24771	5.75e-05	0.0603	CTCACACACACACACACACA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:83016639..83016753,-__1646.1.2.1	2	21	+	4.24771	5.75e-05	0.0603	CTCACACACACACACACACA
RREB1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	43	62	+	4.24771	5.75e-05	0.0603	CACTCCCCCCACCCCACCCC
Myb	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	45	54	+	11.9344	5.75e-05	0.905	GAAACTGACA
POU1F1	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	33	46	-	10.8448	5.75e-05	1	GAAATGCAAATTCA
STAT1	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	8	18	-	10.8727	5.75e-05	0.366	TTTATAGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	23	33	-	10.8727	5.75e-05	0.366	GTGCCGGGAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	23	33	-	10.8727	5.75e-05	0.366	GTGCCGGGAAG
STAT1	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	90	100	+	10.8727	5.75e-05	0.366	TTTATAGGAAC
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	35	50	-	4.60656	5.75e-05	0.833	AGGGCCATCAGGTTCT
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	35	50	-	4.60656	5.75e-05	0.833	AGGGCCATCAGGTTCT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	56	68	-	8.74138	5.75e-05	0.162	GCCACGGAAGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	56	68	-	8.74138	5.75e-05	0.162	GCCACGGAAGTGG
Dlx2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	8	15	+	10.7	5.75e-05	1	GCAATTAA
Dlx2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	8	15	+	10.7	5.75e-05	1	GCAATTAA
Dlx2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	64	+	10.7	5.75e-05	1	GCAATTAA
Dlx2	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	64	+	10.7	5.75e-05	1	GCAATTAA
Dlx2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	58	-	10.7	5.75e-05	1	GCAATTAA
Dlx2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	58	-	10.7	5.75e-05	1	GCAATTAA
Dlx2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	10.7	5.75e-05	1	GCAATTAG
Dlx2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	10.7	5.75e-05	1	GCAATTAG
Dlx2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	10.7	5.75e-05	1	GCAATTAG
Dlx2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	10.7	5.75e-05	1	GCAATTAG
Dlx2	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	10.7	5.75e-05	1	GCAATTAG
Dlx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.0885	5.75e-05	1	CCAATTAA
Dlx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.0885	5.75e-05	1	CCAATTAA
Dlx4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.0885	5.75e-05	1	CCAATTAA
Dlx4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.0885	5.75e-05	1	CCAATTAA
Dlx4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.0885	5.75e-05	1	CCAATTAA
Dlx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	9.97945	5.75e-05	1	CCAATTAA
Dlx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	9.97945	5.75e-05	1	CCAATTAA
Dlx3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	9.97945	5.75e-05	1	CCAATTAA
Dlx3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	9.97945	5.75e-05	1	CCAATTAA
Dlx3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	9.97945	5.75e-05	1	CCAATTAA
BSX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.5094	5.75e-05	1	CCAATTAA
BSX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.5094	5.75e-05	1	CCAATTAA
BSX	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.5094	5.75e-05	1	CCAATTAA
BSX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.5094	5.75e-05	1	CCAATTAA
BSX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.5094	5.75e-05	1	CCAATTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	10	17	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	10	17	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	10	17	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	10	17	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	7	14	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	7	14	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	7	14	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	7	14	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	7	14	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	18	25	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	20	27	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	21	28	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	21	28	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	27	34	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	30	37	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	30	37	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	30	37	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	30	37	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	26	33	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	26	33	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	36	43	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	31	38	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	43	50	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	57	64	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	54	61	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	64	71	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	64	71	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	65	72	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	77	84	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	72	79	-	11.5571	5.75e-05	1	TGACGTAA
GMEB2	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	82	89	+	11.5571	5.75e-05	1	TGACGTAA
GMEB2	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	88	95	-	11.5571	5.75e-05	1	TGACGTAA
OTX2	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	18	25	+	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	26	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	26	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	19	26	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	19	26	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	19	26	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	33	40	+	11.8511	5.75e-05	1	TTAATCCC
OTX2	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	35	42	-	11.8511	5.75e-05	1	TTAATCCC
OTX2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	43	50	+	11.8511	5.75e-05	1	TTAATCCC
OTX2	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	64	71	+	11.8511	5.75e-05	1	TTAATCCC
OTX2	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	89	96	+	11.8511	5.75e-05	1	TTAATCCC
OTX2	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	90	97	-	11.8511	5.75e-05	1	TTAATCCC
Msx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	11.5094	5.75e-05	1	GCAATTAG
Msx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	11.5094	5.75e-05	1	GCAATTAG
Msx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	11.5094	5.75e-05	1	GCAATTAG
Msx3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	11.5094	5.75e-05	1	GCAATTAG
Msx3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	11.5094	5.75e-05	1	GCAATTAG
MSX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	11.9455	5.75e-05	1	CCAATTAC
MSX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	11.9455	5.75e-05	1	CCAATTAC
MSX2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	11.9455	5.75e-05	1	CCAATTAC
MSX2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	11.9455	5.75e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	11.2143	5.75e-05	1	CCAATTAA
MSX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	11.2143	5.75e-05	1	CCAATTAA
MSX1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	11.2143	5.75e-05	1	CCAATTAA
MSX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	11.2143	5.75e-05	1	CCAATTAA
MSX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	11.2143	5.75e-05	1	CCAATTAA
HOXA5	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	88	95	-	10.52	5.75e-05	1	CACTAATG
Prrx2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.0442	5.75e-05	1	CCAATTAC
Prrx2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.0442	5.75e-05	1	CCAATTAC
Prrx2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.0442	5.75e-05	1	CCAATTAC
Prrx2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.0442	5.75e-05	1	CCAATTAC
EN1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	10.9322	5.75e-05	1	GCAATTAG
EN1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	10.9322	5.75e-05	1	GCAATTAG
EN1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	10.9322	5.75e-05	1	GCAATTAG
EN1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	10.9322	5.75e-05	1	GCAATTAG
EN1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	10.9322	5.75e-05	1	GCAATTAG
HOXA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	68	75	+	10.52	5.75e-05	1	CACTAATG
HOXA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	68	75	+	10.52	5.75e-05	1	CACTAATG
HOXA5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	68	75	+	10.52	5.75e-05	1	CACTAATG
HOXA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	68	75	+	10.52	5.75e-05	1	CACTAATG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	14	23	+	11.3434	5.75e-05	0.174	CTAGGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	14	23	+	11.3434	5.75e-05	0.174	CTAGGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	14	23	+	11.3434	5.75e-05	0.174	CTAGGGGTAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	14	23	+	11.3434	5.75e-05	0.174	CTAGGGGTAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	67	76	+	11.3434	5.75e-05	0.174	TGAGGGGGAT
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	86	95	-	11.3434	5.75e-05	0.174	CTAGGGGGAT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	86	95	-	11.3434	5.75e-05	0.174	CTAGGGGGAT
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	87	96	-	11.3434	5.75e-05	0.174	TGAGGGGTAG
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	38	50	-	11.0984	5.75e-05	0.359	CCGTCTCCCTCCC
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	65	77	+	11.0984	5.75e-05	0.359	CCGTCTCCCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	67	79	+	11.0984	5.75e-05	0.359	ACGGCTGCCACCC
RXRG	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	61	74	+	2.38298	5.75e-05	0.48	AGGGGCATAGGTTG
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	41	54	-	2.38298	5.75e-05	0.48	AGGGGCATAGGTTG
RXRG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	41	54	-	2.38298	5.75e-05	0.48	AGGGGCATAGGTTG
INSM1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	43	54	-	10.3776	5.75e-05	0.177	GTCATGGGGGTG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	61	72	+	10.3776	5.75e-05	0.177	GTCATGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	61	72	+	10.3776	5.75e-05	0.177	GTCATGGGGGTG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	56	68	+	10.6721	5.75e-05	0.0586	GCCCGGCAGGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	15	-	10.6721	5.75e-05	0.0586	GCCCCCTCGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	-	10.6721	5.75e-05	0.0586	TCCCTGTGGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	-	10.6721	5.75e-05	0.0586	TCCCTGTGGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	-	10.6721	5.75e-05	0.0586	TCCCTGTGGGGCT
HEY1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	11.6909	5.75e-05	0.158	AGCACGTGAC
HEY1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	11.6909	5.75e-05	0.158	AGCACGTGAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	59	69	+	10.8276	5.76e-05	0.0205	TGCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	6	16	-	10.8276	5.76e-05	0.0205	CCCGCACCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	34	44	-	10.8276	5.76e-05	0.0205	TGCCCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	43	53	-	10.8276	5.76e-05	0.0205	TGCCCGCCCCC
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	14	25	-	11.5169	5.76e-05	0.865	AAGGTGCTGAGT
Mafb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	14	25	-	11.5169	5.76e-05	0.865	AAGGTGCTGAGT
EGR3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	55	69	+	6.89655	5.76e-05	0.0394	TTCCTCCTCCGCAGA
Rhox11	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	6	22	-	11.4342	5.76e-05	1	ACACTGGTGTTAATCCT
Rhox11	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	6	22	-	11.4342	5.76e-05	1	ACACTGGTGTTAATCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	2	17	+	10.5636	5.76e-05	0.039	CTCCGCCCTCCCTCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	2	17	+	10.5636	5.76e-05	0.039	CTCCGCCCTCCCTCCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	10	25	-	10.5636	5.76e-05	0.039	CCCCGCCCCAGCACCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	10	25	-	10.5636	5.76e-05	0.039	CCCCGCCCCAGCACCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	10	25	-	10.5636	5.76e-05	0.039	CCCCGCCCCAGCACCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	41	-	10.5636	5.76e-05	0.039	ACCCCCCCCCGCCCCG
EGR4	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	41	56	+	10.5636	5.76e-05	0.039	TAGCGCCCGCGCCCTG
EGR4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	74	89	+	10.5636	5.76e-05	0.039	ACCCCCCCCCGCCCCG
EGR4	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	59	74	-	10.5636	5.76e-05	0.039	TAGCGCCCGCGCCCTG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	4	15	-	11.1053	5.76e-05	0.0309	CCCTCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	4	15	-	11.1053	5.76e-05	0.0309	CCCTCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	4	15	-	11.1053	5.76e-05	0.0309	CCCTCGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	4	15	-	11.1053	5.76e-05	0.0309	CCCTCGCCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	63	74	-	11.1053	5.76e-05	0.0309	CCCTCGCCCCCC
MAFG	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	90	110	+	10.1122	5.76e-05	1	TGTGGGCTGAGGCAGCGCAGC
MAFG	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	5	25	-	10.1122	5.76e-05	1	TGTGGGCTGAGGCAGCGCAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	27	41	+	10.7586	5.76e-05	0.0133	CTACCACCCCCTGCC
SP2	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	45	59	+	10.7586	5.76e-05	0.0133	TCTCCGCCCTCCTGA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	46	60	+	10.7586	5.76e-05	0.0133	CCCCCTCCCTGCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	46	60	+	10.7586	5.76e-05	0.0133	CCCCCTCCCTGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	46	60	+	10.7586	5.76e-05	0.0133	CCCCCTCCCTGCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	46	60	+	10.7586	5.76e-05	0.0133	CCCCCTCCCTGCCCT
SP2	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	52	66	+	10.7586	5.76e-05	0.0133	ACTCCGCCCATCCCA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	65	79	+	10.7586	5.76e-05	0.0133	CTACCACCCCCTGCC
SP2	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	73	87	+	10.7586	5.76e-05	0.0133	GGCCCGCTCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	28	42	-	10.7586	5.76e-05	0.0133	GGCCCGCTCCCGCTT
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	28	42	-	10.7586	5.76e-05	0.0133	GGCCCGCTCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	28	42	-	10.7586	5.76e-05	0.0133	GGCCCGCTCCCGCTT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	49	63	-	10.7586	5.76e-05	0.0133	ACTCCGCCCATCCCA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	49	63	-	10.7586	5.76e-05	0.0133	ACTCCGCCCATCCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	49	63	-	10.7586	5.76e-05	0.0133	ACTCCGCCCATCCCA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	49	63	-	10.7586	5.76e-05	0.0133	ACTCCGCCCATCCCA
SP2	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	56	70	-	10.7586	5.76e-05	0.0133	TCTCCGCCCTCCTGA
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	26	38	-	10.9048	5.76e-05	0.524	GACTGACAAGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	26	38	-	10.9048	5.76e-05	0.524	GACTGACAAGTGC
FOS	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	+	11.6383	5.76e-05	0.232	AGTGACTCAGC
FOS	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	-	11.6383	5.76e-05	0.232	AGTGACTCAGC
FOS	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	-	11.6383	5.76e-05	0.232	AGTGACTCAGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	+	11.6383	5.76e-05	0.232	AGTGACTCAGC
FOS	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	+	11.6383	5.76e-05	0.232	AGTGACTCAGC
MAX	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	+	12.25	5.76e-05	0.298	AACACGTGGA
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	-	12.25	5.76e-05	0.298	AACACGTGGA
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	-	12.25	5.76e-05	0.298	AACACGTGGA
E2F4	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	37	47	-	11.2931	5.76e-05	0.0477	CGGCGGGAGTT
E2F4	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	57	67	-	11.2931	5.76e-05	0.0477	CGGCGGGAGTT
E2F4	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	48	58	+	11.2931	5.76e-05	0.0477	CGGCGGGAGTT
E2F4	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	68	78	+	11.2931	5.76e-05	0.0477	CGGCGGGAGTT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	-	10.3448	5.76e-05	0.0554	GGCCGCGCGGGCT
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	38	51	+	8.98485	5.76e-05	0.303	CCGCCACCTCAGCC
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	27	40	-	8.98485	5.76e-05	0.303	CCGCCACCTCAGCC
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	34	49	+	2.12069	5.76e-05	0.349	CGACCACCATGCAACC
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	34	49	+	2.12069	5.76e-05	0.349	CGACCACCATGCAACC
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	75	85	-	11.4655	5.76e-05	0.521	CAATCTCAGAC
TEAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	3	12	+	11.4355	5.76e-05	0.799	AGCATTCCTC
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	3	12	+	11.4355	5.76e-05	0.799	AGCATTCCTC
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	3	12	+	11.4355	5.76e-05	0.799	AGCATTCCTC
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	3	12	+	11.4355	5.76e-05	0.799	AGCATTCCTC
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	96	107	-	11.1857	5.76e-05	0.217	AGCGCCCACACG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	96	107	-	11.1857	5.76e-05	0.217	AGCGCCCACACG
EMX2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	11.4255	5.77e-05	1	GCCAATTAGG
EMX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.4255	5.77e-05	1	ACTAATTAGA
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	8	26	+	10.8226	5.77e-05	0.147	CGGGGTGCTGGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	8	26	+	10.8226	5.77e-05	0.147	CGGGGTGCTGGGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	8	26	+	10.8226	5.77e-05	0.147	CGGGGTGCTGGGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	75	93	-	10.8226	5.77e-05	0.147	GAAGCCCGCGGGGCGCGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	75	93	-	10.8226	5.77e-05	0.147	GAAGCCCGCGGGGCGCGGC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	75	93	-	10.8226	5.77e-05	0.147	GAAGCCCGCGGGGCGCGGC
ZIC1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	23	36	+	6.82979	5.77e-05	0.0995	CGCTCCCCGCAGGG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	60	71	+	9.52459	5.77e-05	0.103	GAGCCGGAAGCT
ELF4	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	60	71	+	9.52459	5.77e-05	0.103	AACCCGGAAACC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	60	71	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	60	71	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	65	76	+	9.52459	5.77e-05	0.103	GAGCCGGAAGCT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	65	76	+	9.52459	5.77e-05	0.103	GAGCCGGAAGCT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	65	76	+	9.52459	5.77e-05	0.103	GAGCCGGAAGCT
ELF4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	90	101	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	96	107	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	96	107	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	96	107	+	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	8	19	-	9.52459	5.77e-05	0.103	TGCCAGGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	19	-	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	25	-	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	25	-	9.52459	5.77e-05	0.103	TTCCCGGATGTG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	25	-	9.52459	5.77e-05	0.103	TTCCCGGATGTG
Twist2	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	4	13	+	12.0656	5.77e-05	1	ACCATGTGTC
Twist2	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	102	111	-	12.0656	5.77e-05	1	ACCATGTGTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	+	10.4754	5.77e-05	0.0641	CCCCTCCCGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	+	10.4754	5.77e-05	0.0641	CCCCTCCCGGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	31	43	+	10.4754	5.77e-05	0.0641	AGCCGCCGGGGGA
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	61	73	-	10.4754	5.77e-05	0.0641	GCCCCCAAAGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	89	101	-	10.4754	5.77e-05	0.0641	TCCCGTCAGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	96	108	-	10.4754	5.77e-05	0.0641	AGCCGCCGGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	96	108	-	10.4754	5.77e-05	0.0641	AGCCGCCGGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	96	108	-	10.4754	5.77e-05	0.0641	AGCCGCCGGGGGA
REST	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	19	39	-	5.56122	5.77e-05	0.219	TTCAGGACCGTGGCTATGGAG
REST	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	76	96	+	5.56122	5.77e-05	0.219	TTCAGGACCGTGGCTATGGAG
Klf1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	21	31	+	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	48	58	+	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	49	59	+	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	95	105	+	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	102	112	+	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	3	13	-	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	10	20	-	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	20	30	-	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	56	66	-	11.2121	5.77e-05	0.0469	CGCCCCTCCCT
SOX21	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	16	30	+	2.10204	5.77e-05	1	CACAATAGGAGTGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.4681	5.77e-05	0.12	ACCGGAAGGT
FLI1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	42	51	+	11.4681	5.77e-05	0.12	ACAGGAAGCG
FLI1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	50	59	+	11.4681	5.77e-05	0.12	ACAGGAAGCG
FLI1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	69	78	+	11.4681	5.77e-05	0.12	ACAGGAAGCG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	37	46	-	11.4681	5.77e-05	0.12	ACAGGAAGCG
FLI1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
FLI1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	11.4681	5.77e-05	0.12	ACAGGAAGTC
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	79	93	+	10.1212	5.77e-05	0.31	CAGGATGACTCATGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	79	93	+	10.1212	5.77e-05	0.31	CAGGATGACTCATGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	79	93	+	10.1212	5.77e-05	0.31	CAGGATGACTCATGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	79	93	+	10.1212	5.77e-05	0.31	CAGGATGACTCATGA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	79	93	+	10.1212	5.77e-05	0.31	CAGGATGACTCATGA
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	70	-	10.8163	5.77e-05	0.31	AGCCACGTGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	15	25	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	15	25	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	15	25	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	15	25	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	45	55	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	68	78	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	100	110	+	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	12	22	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	12	22	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	12	22	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	12	22	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	12	22	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	16	26	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	16	26	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	32	42	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	37	47	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	37	47	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	37	47	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	39	49	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	39	49	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	39	49	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	60	70	-	10.4545	5.77e-05	0.0191	GAGGCGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	93	103	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	102	112	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	102	112	-	10.4545	5.77e-05	0.0191	GCACCCGCGCC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	18	28	-	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	21	31	-	11.2295	5.77e-05	0.0604	GCGGAACTGGC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	21	31	-	11.2295	5.77e-05	0.0604	GCGGAACTGGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	64	74	-	11.2295	5.77e-05	0.0604	CAGGAAGTCCC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	86	96	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	87	97	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	87	97	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	87	97	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	87	97	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	87	97	+	11.2295	5.77e-05	0.0604	CAGGAAGTCGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	90	100	+	11.2295	5.77e-05	0.0604	GCGGAAGCCAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	90	100	+	11.2295	5.77e-05	0.0604	GCGGAAGCCAG
RORA	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	24	33	-	12.191	5.77e-05	0.973	ACCAAGGTCA
RORA	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	45	54	-	12.191	5.77e-05	0.973	CTCAAGGTCA
RORA	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	68	77	-	12.191	5.77e-05	0.973	ACCAAGGTCA
RORA	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	61	70	+	12.191	5.77e-05	0.973	CTCAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	82	91	+	12.191	5.77e-05	0.973	ACCAAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	82	91	+	12.191	5.77e-05	0.973	ACCAAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	82	91	+	12.191	5.77e-05	0.973	ACCAAGGTCA
RORA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	82	91	+	12.191	5.77e-05	0.973	ACCAAGGTCA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	11.5172	5.77e-05	0.112	TCCGGAAATG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	11.5172	5.77e-05	0.112	TCCGGAAATG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	11.5172	5.77e-05	0.112	TCCGGAAATG
POU6F2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	43	52	-	11.8	5.77e-05	1	ATCTCATTAT
POU6F2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	43	52	-	11.8	5.77e-05	1	ATCTCATTAT
POU6F2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	43	52	-	11.8	5.77e-05	1	ATCTCATTAT
POU6F2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	43	52	-	11.8	5.77e-05	1	ATCTCATTAT
POU6F2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	43	52	-	11.8	5.77e-05	1	ATCTCATTAT
GLIS3	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	49	62	+	4.34848	5.77e-05	0.379	TAGCCCCCAAGTCG
IRF9	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	7	21	-	-1.89091	5.78e-05	0.592	CAGGAAATAGAAACT
IRF9	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	93	107	+	-1.89091	5.78e-05	0.592	CAGGAAATAGAAACT
SPI1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	23	36	+	3.49091	5.78e-05	0.199	GGGAACCGGAAGTC
SPI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	79	92	-	3.49091	5.78e-05	0.199	GGGAACCGGAAGTC
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	79	92	-	3.49091	5.78e-05	0.199	GGGAACCGGAAGTC
FOXC2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	45	56	-	11.5743	5.78e-05	1	TAAATAAATAAC
KLF5	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	48	57	+	11.5102	5.78e-05	0.0218	GCCTCACCCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	34	-	11.0385	5.78e-05	0.335	TGGGTGCAAAGGTGA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	34	-	11.0385	5.78e-05	0.335	TGGGTGCAAAGGTGA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	89	103	-	11.0385	5.78e-05	0.335	AAAGTCCAAAGTGAA
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	85	98	-	6.06122	5.78e-05	0.365	TGACTAGGAGCCAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	17	30	+	6.06122	5.78e-05	0.365	TGACTAGGAGCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	17	30	+	6.06122	5.78e-05	0.365	TGACTAGGAGCCAA
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	51	59	-	11.8545	5.78e-05	1	CGCACTTAA
Nkx3-1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	51	59	-	11.8545	5.78e-05	1	CGCACTTAA
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	68	78	+	11.8103	5.78e-05	0.902	TCCTGTTTTTC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	39	50	+	11.4727	5.78e-05	0.0893	GACCCTGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	+	11.4727	5.78e-05	0.0893	TGCCGGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	+	11.4727	5.78e-05	0.0893	TGCCGGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	47	-	11.4727	5.78e-05	0.0893	GACCCTGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	47	-	11.4727	5.78e-05	0.0893	GACCCTGGGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	-	11.4727	5.78e-05	0.0893	CGCCTGCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	-	11.4727	5.78e-05	0.0893	CGCCTGCGGGGA
Hes1	WILDTYPE__Antisense.noflip.NA__chr6:75994650..75994764,+__758.1.0.0	96	105	-	10.0559	5.78e-05	0.101	CGCACGCGAA
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	23	37	+	9.06557	5.78e-05	0.463	GTGACTCGGCGGCCA
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	55	69	+	9.06557	5.78e-05	0.463	GTGACTCGGCGGCCA
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	89	103	+	9.06557	5.78e-05	0.463	GTGACTCAGGGCAAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	45	54	+	11.5976	5.78e-05	0.175	CTCACATGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	45	54	+	11.5976	5.78e-05	0.175	CTCACATGAT
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	-	8.55046	5.78e-05	0.855	TGGCATGTGTCC
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	+	8.55046	5.78e-05	0.855	TGGCATGTGTCC
HOXC13	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	58	68	+	11.0484	5.78e-05	1	GCTCATAAACG
KLF14	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	31	44	-	9.2069	5.78e-05	0.0337	CTCCCCGCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	32	45	-	9.2069	5.78e-05	0.0337	TCCCACCCCCCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	47	60	+	9.2069	5.78e-05	0.0337	GGCCACTCCCTCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	55	68	-	9.2069	5.78e-05	0.0337	GGCCACTCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	55	68	-	9.2069	5.78e-05	0.0337	GGCCACTCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	55	68	-	9.2069	5.78e-05	0.0337	GGCCACTCCCTCCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	55	68	-	9.2069	5.78e-05	0.0337	GGCCACTCCCTCCC
KLF14	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	70	83	+	9.2069	5.78e-05	0.0337	TCCCACCCCCCCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	81	94	+	9.2069	5.78e-05	0.0337	GGCCCCTCCCCCGT
FOXC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	80	90	+	11.66	5.78e-05	1	AATGAAAACAT
FOXC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	80	90	+	11.66	5.78e-05	1	AATGAAAACAT
FOXC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	80	90	+	11.66	5.78e-05	1	AATGAAAACAT
FOXC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	80	90	+	11.66	5.78e-05	1	AATGAAAACAT
ETV1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	11.5091	5.78e-05	0.117	ACAGGAAGTA
ETV1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	11.5091	5.78e-05	0.117	ACAGGAAGTA
ZBTB7B	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	9	20	-	10.9483	5.78e-05	0.365	ACGCCCCCCCCA
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	60	71	+	10.9483	5.78e-05	0.365	GCGCCCACCCCG
ZBTB7B	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	95	106	+	10.9483	5.78e-05	0.365	ACGCCCCCCCCA
EHF	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	83	94	-	10.5902	5.78e-05	0.129	AACCTGGAAGTT
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	20	33	-	1.5303	5.78e-05	0.198	TGCCGACGTCAGCG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	20	33	-	1.5303	5.78e-05	0.198	TGCCGACGTCAGCG
REL	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	76	85	+	11.3131	5.78e-05	0.312	CGGCCTTTCC
REL	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	30	39	-	11.3131	5.78e-05	0.312	CGGCCTTTCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	26	43	-	-12.8158	5.78e-05	0.0501	GAGGAGGAGGGAGAAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	26	43	-	-12.8158	5.78e-05	0.0501	GAGGAGGAGGGAGAAAGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	45	59	+	11.0811	5.78e-05	0.182	CAGGGCCAAAGGTTG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	45	59	+	11.0811	5.78e-05	0.182	CAGGGCCAAAGGTTG
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	104	-	11.0811	5.78e-05	0.182	CAGGGCCAAAGGTTG
ZIC4	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	5	19	+	10.6545	5.78e-05	0.109	CACCGCCTGCTGACA
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	96	110	-	10.6545	5.78e-05	0.109	CACCGCCTGCTGACA
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	96	110	-	10.6545	5.78e-05	0.109	CACCGCCTGCTGACA
Hand1::Tcf3	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	75	84	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	103	112	-	11.573	5.78e-05	0.93	CGTCTGGAAG
TCF3	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	84	93	+	12.5385	5.78e-05	0.404	GACACCTGCA
Foxq1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	73	83	-	11.8469	5.79e-05	1	TAATGTTTACT
Foxq1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	73	83	-	11.8469	5.79e-05	1	TAATGTTTACT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	8	17	-	11.78	5.79e-05	0.821	ATTATGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	8	17	-	11.78	5.79e-05	0.821	ATTATGCAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	31	40	-	11.78	5.79e-05	0.821	ATTATGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	40	49	+	11.78	5.79e-05	0.821	ATTATGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	31	40	-	11.78	5.79e-05	0.821	ATTATGCAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	40	49	+	11.78	5.79e-05	0.821	ATTATGCAAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	12	26	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	12	26	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	12	26	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	12	26	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGCCT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	61	75	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGGAA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	61	75	-	6.87931	5.79e-05	0.0394	CCCCGCCCCCGGGAA
Rfx1	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	9	22	-	10.431	5.79e-05	0.273	CTCTCTATGGAAAC
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	61	76	+	2.10345	5.79e-05	0.349	AAGCCATGGTGCCCTG
ZNF143	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	61	76	+	2.10345	5.79e-05	0.349	AAGCCATGGTGCCCTG
ETV3	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	56	65	+	11.4085	5.79e-05	0.14	AACGGATGTG
ETV3	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	59	-	11.4085	5.79e-05	0.14	AACGGATGTG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	91	103	+	10.3276	5.79e-05	0.0554	GGCCTTGGAGGCG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	46	+	11.5636	5.79e-05	0.0551	AGCCCGGGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	56	66	+	11.5636	5.79e-05	0.0551	AGCCCGGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	56	66	+	11.5636	5.79e-05	0.0551	AGCCCGGGGCC
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	69	79	-	11.5636	5.79e-05	0.0551	AGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	49	59	+	11.4808	5.79e-05	0.0744	AGCCCAGGGCA
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	+	9.60606	5.79e-05	0.331	GGTCACCGTGACAATG
Myod1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	4	16	+	12.102	5.79e-05	0.172	GGCACCTGTCAGA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	33	45	+	12.102	5.79e-05	0.172	TTCACCTGCCCCG
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	77	89	-	12.102	5.79e-05	0.172	CGCAGCTGCGGGG
Myod1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	99	111	-	12.102	5.79e-05	0.172	GGCACCTGTCAGA
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	17	26	+	10.602	5.79e-05	0.224	GGGAGATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	17	26	+	10.602	5.79e-05	0.224	GGGAGATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	21	30	-	10.602	5.79e-05	0.224	GGGAGATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	21	30	-	10.602	5.79e-05	0.224	GGGAGATCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	85	94	+	10.602	5.79e-05	0.224	GGGAGATCCC
RELA	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	89	98	-	10.602	5.79e-05	0.224	GGGAGATCCC
BCL6B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	84	100	+	-15.7429	5.8e-05	0.94	TTCTCTCAAGGAAGTCA
BCL6B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	84	100	+	-15.7429	5.8e-05	0.94	TTCTCTCAAGGAAGTCA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	44	63	+	4.22018	5.8e-05	0.0607	GCCCCCCCCGCCCGCCGCCG
NR3C1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	-	5.77551	5.8e-05	1	AGGAACATGGTGTTTAT
NR3C1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	+	5.77551	5.8e-05	1	AGGAACATGGTGTTTAT
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	+	5.77551	5.8e-05	1	AGGAACATGGTGTTTAT
NR3C1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	-	5.77551	5.8e-05	1	GTAAACACCATGTTCCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	36	48	-	10.459	5.8e-05	0.0641	TGCCGGCAGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	36	48	-	10.459	5.8e-05	0.0641	TGCCGGCAGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	36	48	-	10.459	5.8e-05	0.0641	TGCCGGCAGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	36	48	-	10.459	5.8e-05	0.0641	TGCCGGCAGGGCC
TBX19	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	32	51	-	9.58537	5.8e-05	1	TGTGACAAATGGATGTCATC
TBX19	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	32	51	-	9.58537	5.8e-05	1	TGTGACAAATGGATGTCATC
TBX19	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	11	30	+	9.58537	5.8e-05	1	TGTGACAAATGGATGTCATC
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	56	70	-	10.7258	5.8e-05	1	TTCTCTTATGTAAAG
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	21	35	+	10.7258	5.8e-05	1	TTCTCTTATGTAAAG
SP1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	22	32	-	11.2692	5.8e-05	0.0152	CCTCCGCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	24	34	-	11.2692	5.8e-05	0.0152	GGCCCACCCTC
SP1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	35	45	+	11.2692	5.8e-05	0.0152	GGCCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	57	67	+	11.2692	5.8e-05	0.0152	CTTCCGCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	57	67	+	11.2692	5.8e-05	0.0152	CTTCCGCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	57	67	+	11.2692	5.8e-05	0.0152	CTTCCGCCCTC
SP1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	70	80	-	11.2692	5.8e-05	0.0152	GGCCCACCCTC
SP1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	81	91	+	11.2692	5.8e-05	0.0152	GGCCCACCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	81	91	+	11.2692	5.8e-05	0.0152	CTTCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	91	101	+	11.2692	5.8e-05	0.0152	CCTCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	91	101	+	11.2692	5.8e-05	0.0152	CCTCCGCCTTC
ELF4	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	87	98	-	9.5082	5.8e-05	0.103	GACGCGGAACTA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	14	26	+	10.6557	5.8e-05	0.0586	AGCCCCACAGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	14	26	+	10.6557	5.8e-05	0.0586	AGCCCCACAGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	14	26	+	10.6557	5.8e-05	0.0586	AGCCCCACAGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	-	10.6557	5.8e-05	0.0586	GCCCCGCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	-	10.6557	5.8e-05	0.0586	GCCCCGCCGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	-	10.6557	5.8e-05	0.0586	GCCCCGCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	-	10.6557	5.8e-05	0.0586	GCCCCGCCGGGCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	13	22	+	10.9174	5.8e-05	0.0553	GCCCCCCCGT
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	17	26	+	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	24	33	+	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	38	47	+	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	38	47	+	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	14	23	-	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	32	41	-	10.9174	5.8e-05	0.0553	ACCCCCCACC
ZNF740	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	44	53	-	10.9174	5.8e-05	0.0553	ACCCCCCACC
ESR2	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	74	88	-	11	5.8e-05	0.447	AGGTGAGAGAGCCTT
INSM1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	45	56	+	10.3469	5.8e-05	0.177	GGCCTGCGGTCG
INSM1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	59	70	-	10.3469	5.8e-05	0.177	GGCCTGCGGTCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	26	46	+	9.93878	5.8e-05	0.0183	GGGGGTGGGGAAGTGGAGAGT
Klf1	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	2	12	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	12	22	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	12	22	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	12	22	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	12	22	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	17	27	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	17	27	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	37	47	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	76	86	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	83	93	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	84	94	+	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	97	107	+	11.197	5.8e-05	0.0469	TCACACACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	97	107	+	11.197	5.8e-05	0.0469	TCACACACCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	8	18	-	11.197	5.8e-05	0.0469	TCACACACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	21	31	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	21	31	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	22	32	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	29	39	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	31	41	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	31	41	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	58	68	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	58	68	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	58	68	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	58	68	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	72	82	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	72	82	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	88	98	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	103	113	-	11.197	5.8e-05	0.0469	GACCCCGCCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	32	46	+	8.72131	5.8e-05	0.0634	AGCCCCGCCCCGCCG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	32	46	+	8.72131	5.8e-05	0.0634	AGCCCCGCCCCGCCG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	32	46	+	8.72131	5.8e-05	0.0634	AGCCCCGCCCCGCCG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	32	46	+	8.72131	5.8e-05	0.0634	AGCCCCGCCCCGCCG
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	32	46	+	8.72131	5.8e-05	0.0634	AGCCCCGCCCCGCCG
HSF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	39	51	+	9.4	5.8e-05	1	TTCCAGGATGTTC
HSF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	39	51	+	9.4	5.8e-05	1	TTCCAGGATGTTC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	1	12	+	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	1	12	+	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
SP8	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	8	19	+	11.0921	5.8e-05	0.0309	GCCCCGCGCACC
SP8	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	23	+	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	5	16	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	30	41	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	30	41	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	23	34	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	26	37	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	26	37	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	26	37	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	26	37	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	28	39	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	44	55	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	46	57	+	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	46	57	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	46	57	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	46	57	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	46	57	+	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	38	49	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	38	49	-	11.0921	5.8e-05	0.0309	GCCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	50	61	-	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	58	69	-	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	58	69	-	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
SP8	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	110	+	11.0921	5.8e-05	0.0309	ACTCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	103	114	-	11.0921	5.8e-05	0.0309	GCAAAGCCCACT
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	42	51	-	11.4468	5.8e-05	0.898	AGGTGTCAAG
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	42	51	-	11.4468	5.8e-05	0.898	AGGTGTCAAG
TBR1	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	82	91	-	11.4468	5.8e-05	0.898	AGGTGAGAAT
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	49	63	+	8.52857	5.8e-05	0.11	CACGCCCCGCTGCAG
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	49	63	+	8.52857	5.8e-05	0.11	CACGCCCCGCTGCAG
RFX2	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	-	6.44286	5.8e-05	0.334	CGTTTCCAGGGCCACC
RFX2	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	+	6.44286	5.8e-05	0.334	CGTTTCCAGGGCCACC
NR2F1	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	31	43	-	11.5918	5.8e-05	0.434	TCAGGGTCAGAGG
NR2F1	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	72	84	+	11.5918	5.8e-05	0.434	TCAGGGTCAGAGG
PAX7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	27	36	-	9.61818	5.8e-05	1	TAATTGATTG
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	27	36	-	9.61818	5.8e-05	1	TAATTGATTG
PAX7	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	95	104	-	9.61818	5.8e-05	1	TAATTGATTG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	79	93	+	-4.84286	5.8e-05	0.998	CAGTTCTGGAGGTCA
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	27	38	-	11.0152	5.8e-05	0.109	CCGCCTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	70	81	-	11.0152	5.8e-05	0.109	CCGCCTCCGCCG
HINFP	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	100	111	-	11.0152	5.8e-05	0.109	CCGCCTCCGCCG
Bcl6	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	23	36	-	11.0806	5.8e-05	0.421	ATTGCTGGAAGGAA
Bcl6	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	57	70	-	11.0806	5.8e-05	0.421	ATTGCTGGAAGGAA
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	90	103	-	11.0806	5.8e-05	0.421	CTCCCTGAAGAGCC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	90	103	-	11.0806	5.8e-05	0.421	CTCCCTGAAGAGCC
ESR1	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	86	102	-	0.409091	5.8e-05	0.514	ACGGTCGAGCTGGCCGG
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	71	85	+	9.95455	5.8e-05	0.306	TGACTTGCACTTCCC
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	55	65	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	55	65	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	60	-	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	68	-	11.5091	5.81e-05	0.139	GCCCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	68	-	11.5091	5.81e-05	0.139	GCCCGGAAGCA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	68	-	11.5091	5.81e-05	0.139	GCCCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	82	92	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	82	92	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	82	92	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	82	92	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	103	113	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	103	113	+	11.5091	5.81e-05	0.139	CACCGGAAGTG
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	74	82	+	10.25	5.81e-05	0.215	TTGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	74	82	+	10.25	5.81e-05	0.215	TTGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	74	82	+	10.25	5.81e-05	0.215	TTGCCCACA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	74	82	+	10.25	5.81e-05	0.215	TTGCCCACA
Sox1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	71	85	-	4.13793	5.81e-05	1	GGCTCTTTCATTGTT
Sox1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	71	85	-	4.13793	5.81e-05	1	GGCTCTTTCATTGTT
Klf4	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	49	58	-	11.0714	5.81e-05	0.0219	AGGGAGTGGT
Sox3	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	2	11	+	11.9828	5.81e-05	0.659	TCTTTGTCTC
SP2	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	40	54	+	10.7414	5.81e-05	0.0134	CCCCCGCTCTCCCCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	47	61	+	10.7414	5.81e-05	0.0134	GGCCCGCCTTGCTAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	47	61	+	10.7414	5.81e-05	0.0134	GGCCCGCCTTGCTAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	67	81	+	10.7414	5.81e-05	0.0134	GGCCCGCCTTGCTAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	67	81	+	10.7414	5.81e-05	0.0134	GGCCCGCCTTGCTAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	76	90	+	10.7414	5.81e-05	0.0134	CGCCCTCCCATTTCC
SP2	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	12	26	-	10.7414	5.81e-05	0.0134	CTCCCACCTCCAGAC
SP2	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	61	75	-	10.7414	5.81e-05	0.0134	CCCCCGCTCTCCCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	70	84	-	10.7414	5.81e-05	0.0134	CTTCCGCCCACCGTG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	76	90	-	10.7414	5.81e-05	0.0134	GCCGCGCCTCTGGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	76	90	-	10.7414	5.81e-05	0.0134	GCCGCGCCTCTGGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	76	90	-	10.7414	5.81e-05	0.0134	GCCGCGCCTCTGGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	76	90	-	10.7414	5.81e-05	0.0134	GCCGCGCCTCTGGCC
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	42	51	+	11.7586	5.81e-05	0.859	GCCACCTGTA
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	42	51	+	11.7586	5.81e-05	0.859	GCCACCTGTA
FIGLA	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	104	113	+	11.7586	5.81e-05	0.859	GCCACCTGTA
KLF13	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	42	59	-	5.17241	5.81e-05	0.289	CGGCAAGGCCCCCTCGAT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	24	37	+	6.80851	5.81e-05	0.0995	AGCAACCCGCTGTT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	24	37	+	6.80851	5.81e-05	0.0995	AGCAACCCGCTGTT
MNT	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	12.2727	5.81e-05	0.303	CCCACGTGAT
MNT	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	12.2727	5.81e-05	0.303	CCCACGTGAT
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	12.2727	5.81e-05	0.303	CCCACGTGAT
MNT	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	12.2727	5.81e-05	0.303	CCCACGTGAT
MNT	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	12.2727	5.81e-05	0.303	CCCACGTGAT
CREB3	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	25	38	+	10.0857	5.81e-05	0.255	GTAACACGTCAGTC
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	37	47	+	11.4	5.81e-05	0.0702	CCCCGGAGGCT
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	49	59	+	11.4	5.81e-05	0.0702	AGCCCAGGGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	33	-	11.4	5.81e-05	0.0702	CCCCGGAGGCT
NRF1	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	2	12	+	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	15	25	+	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	88	98	+	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	2	12	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	2	12	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	2	12	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	2	12	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	17	27	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	90	100	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	103	113	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	104	114	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	104	114	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	104	114	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	104	114	-	10.4364	5.81e-05	0.0191	GCACGCGCGCG
USF2	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	5	15	-	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	6	16	-	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	76	86	-	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	76	86	-	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	58	68	+	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	58	68	+	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	99	109	+	11.5918	5.81e-05	0.143	TTCATGTGACA
USF2	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	100	110	+	11.5918	5.81e-05	0.143	TTCATGTGACA
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	74	85	+	11	5.81e-05	1	AAAACCAGTCTC
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	74	85	+	11	5.81e-05	1	AAAACCAGTCTC
GRHL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	74	85	+	11	5.81e-05	1	AAAACCAGTCTC
GRHL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	74	85	+	11	5.81e-05	1	AAAACCAGTCTC
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	74	85	+	11	5.81e-05	1	AAAACCAGTCTC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	11.3061	5.81e-05	0.133	CCCACGTGCT
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	11.3061	5.81e-05	0.133	CCCACGTGCT
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	15	24	-	11.3061	5.81e-05	0.133	CCCACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	15	24	-	11.3061	5.81e-05	0.133	CCCACGTGAG
TFE3	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	45	54	+	11.3061	5.81e-05	0.133	CCCACGTGAG
TFE3	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	11.3061	5.81e-05	0.133	CCCACGTGCT
TFE3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	95	104	-	11.3061	5.81e-05	0.133	CCCACGTGAG
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	57	66	+	12.1818	5.81e-05	0.411	CCATGTGTAT
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	57	66	+	12.1818	5.81e-05	0.411	CCATGTGTAT
PAX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	22	38	-	1.16364	5.81e-05	0.501	TGTTCCGCCTGACAGCC
PAX9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	22	38	-	1.16364	5.81e-05	0.501	TGTTCCGCCTGACAGCC
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	19	-	3.86207	5.81e-05	0.189	CGCCACGTGGCC
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	19	-	3.86207	5.81e-05	0.189	CGCCACGTGGCC
HES7	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	107	+	3.86207	5.81e-05	0.189	CGCCACGTGGCC
EGR4	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	1	16	+	10.5455	5.81e-05	0.039	GCGCCCCCACCCACTA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	16	31	+	10.5455	5.81e-05	0.039	CCCCGCCCGCCCCGGT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	16	31	+	10.5455	5.81e-05	0.039	CCCCGCCCGCCCCGGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	18	33	+	10.5455	5.81e-05	0.039	CACCGCCCTCCCGTCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	18	33	+	10.5455	5.81e-05	0.039	CACCGCCCTCCCGTCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	37	52	+	10.5455	5.81e-05	0.039	CGATTCCCACCCACTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	37	52	+	10.5455	5.81e-05	0.039	CGATTCCCACCCACTT
EGR4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	31	46	-	10.5455	5.81e-05	0.039	CCCCGCCGCCCCACAG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	99	114	-	10.5455	5.81e-05	0.039	GCGCCCCCACCCACTA
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	99	114	-	10.5455	5.81e-05	0.039	GCGCCCCCACCCACTA
Sox11	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	22	36	+	-13.2857	5.81e-05	1	GACAATTAAATTGTA
Sox11	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	79	93	-	-13.2857	5.81e-05	1	GACAATTAAATTGTA
Sox11	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	79	93	-	-13.2857	5.81e-05	1	GACAATTAAATTGTA
Rxra	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	17	30	+	3.54878	5.81e-05	0.484	GAGGTGAAGGGGCG
Myog	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	11	21	-	12.102	5.81e-05	0.153	CACAGGTGCGG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	104	+	12.102	5.81e-05	0.153	CACAGGTGCGG
Myog	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	104	+	12.102	5.81e-05	0.153	CACAGGTGCGG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	104	+	12.102	5.81e-05	0.153	CACAGGTGCGG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	104	+	12.102	5.81e-05	0.153	CACAGGTGCGG
Myog	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	87	97	-	12.102	5.81e-05	0.153	AGCAGCTGTTC
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	72	81	+	11.6341	5.82e-05	0.472	GTCAGGCCAC
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	72	81	+	11.6341	5.82e-05	0.472	GTCAGGCCAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	72	81	+	11.6341	5.82e-05	0.472	GTCAGGCCAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	72	81	+	11.6341	5.82e-05	0.472	GTCAGGCCAC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	74	86	-	2.77551	5.82e-05	0.253	CTGGGATTCACCC
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	74	86	-	2.77551	5.82e-05	0.253	CTGGGATTCACCC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	21	39	-	9.04918	5.82e-05	0.119	GGCCCGGGTGGGGGCGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	21	39	-	9.04918	5.82e-05	0.119	GGCCCGGGTGGGGGCGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	21	39	-	9.04918	5.82e-05	0.119	GGCCCGGGTGGGGGCGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	21	39	-	9.04918	5.82e-05	0.119	GGCCCGGGTGGGGGCGCCG
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	11	25	+	6.86207	5.82e-05	0.0394	TCCCGCCGCCGCCAG
EGR3	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	77	91	+	6.86207	5.82e-05	0.0394	CCACACCCACACGGT
EGR3	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	95	109	-	6.86207	5.82e-05	0.0394	CCCCGCCGCCGCTGC
PAX5	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	37	55	+	10.8065	5.82e-05	0.147	AAACTCAGCCAGGCCGGAA
PAX5	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	60	78	-	10.8065	5.82e-05	0.147	AAACTCAGCCAGGCCGGAA
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	97	108	+	3.60656	5.82e-05	0.598	TGACAGGTGAAG
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	97	108	+	3.60656	5.82e-05	0.598	TGACAGGTGAAG
PKNOX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	97	108	+	3.60656	5.82e-05	0.598	TGACAGGTGAAG
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	97	108	+	3.60656	5.82e-05	0.598	TGACAGGTGAAG
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	99	113	+	-4.85714	5.82e-05	0.998	AGGGGCGAAAGGACA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	99	113	+	-4.85714	5.82e-05	0.998	AGGGGCGAAAGGACA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	30	40	-	11.2759	5.82e-05	0.0479	AGGCGCGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.1.0	30	40	-	11.2759	5.82e-05	0.0479	AGGCGCGAGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	69	79	-	11.2759	5.82e-05	0.0479	AGGCGCGAGGA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	69	79	-	11.2759	5.82e-05	0.0479	AGGCGCGAGGA
E2F4	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	36	46	+	11.2759	5.82e-05	0.0479	AGGCGCGAGGA
NEUROD2	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	40	49	-	11.6207	5.82e-05	1	GCCACATGGT
NEUROD2	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	66	75	+	11.6207	5.82e-05	1	GCCACATGGT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	5	18	+	10.5962	5.82e-05	0.0232	TTCCCGCCCCTTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	5	18	+	10.5962	5.82e-05	0.0232	TTCCCGCCCCTTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	5	18	+	10.5962	5.82e-05	0.0232	TTCCCGCCCCTTCT
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	24	38	-	10.6061	5.82e-05	0.108	GTCCCGCGCGGCGCC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	82	96	-	10.6061	5.82e-05	0.108	ACATCGCGAGAGTTC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	19	33	+	10.6061	5.82e-05	0.108	ACATCGCGAGAGTTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	43	57	+	10.6061	5.82e-05	0.108	GTCTCGCGCAAGCCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	43	57	+	10.6061	5.82e-05	0.108	GTCTCGCGCAAGCCG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	43	57	+	10.6061	5.82e-05	0.108	GTCTCGCGCAAGCCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	43	57	+	10.6061	5.82e-05	0.108	GTCTCGCGCAAGCCG
MEF2D	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	47	58	-	7.14545	5.82e-05	0.978	ACTATTTATAAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	24	40	+	4.36364	5.82e-05	0.0285	TGGGATCCGCCCCTCCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.0.0	26	39	+	6.09184	5.82e-05	0.0723	GAGGGCGGATGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.1.0	26	39	+	6.09184	5.82e-05	0.0723	GAGGGCGGATGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.2.0	26	39	+	6.09184	5.82e-05	0.0723	GAGGGCGGATGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.0	26	39	+	6.09184	5.82e-05	0.0723	GAGGGCGGATGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.1	26	39	+	6.09184	5.82e-05	0.0723	GAGGGCGGATGGGG
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	71	85	-	10.7177	5.83e-05	1	GTTTCTGCTGCAAAT
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	71	85	-	10.7177	5.83e-05	1	GTTTCTGCTGCAAAT
CENPB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	59	73	-	10.7308	5.83e-05	0.848	CCCGCCCCCTCCGCA
CENPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	59	73	-	10.7308	5.83e-05	0.848	CCCGCCCCCTCCGCA
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	29	40	+	11.0484	5.83e-05	1	AGATGCAAATGT
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	49	63	+	11.2917	5.83e-05	0.567	TTATAAAAACCGTCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	49	63	+	11.2917	5.83e-05	0.567	TTATAAAAACCGTCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	49	63	+	11.2917	5.83e-05	0.567	TTATAAAAACCGTCC
TBP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	55	69	+	11.2917	5.83e-05	0.567	GTTTAAAAGGGCGTC
TBP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	55	69	+	11.2917	5.83e-05	0.567	GTTTAAAAGGGCGTC
TBP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	55	69	+	11.2917	5.83e-05	0.567	GTTTAAAAGGGCGTC
STAT1	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	64	74	-	10.8545	5.83e-05	0.366	GCTCCGGGAAA
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	45	55	+	10.8545	5.83e-05	0.366	TTTCTAAGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	45	55	+	10.8545	5.83e-05	0.366	TTTCTAAGAAG
RREB1	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	32	51	-	4.20183	5.83e-05	0.0607	CCACAAAACAGGAACCCTGA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	23	42	+	4.20183	5.83e-05	0.0607	CCACAAAACAGGAACCCTGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	43	62	+	4.20183	5.83e-05	0.0607	ACCCCACCCCCACCCCTCTC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	43	62	+	4.20183	5.83e-05	0.0607	ACCCCACCCCCACCCCTCTC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	64	74	-	11.5818	5.83e-05	0.0624	GTTCTTCCGGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	64	74	-	11.5818	5.83e-05	0.0624	GTTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	64	74	-	11.5818	5.83e-05	0.0624	GTTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	64	74	-	11.5818	5.83e-05	0.0624	GTTCTTCCGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	64	74	-	11.5818	5.83e-05	0.0624	GTTCTTCCGGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	68	79	+	11.0789	5.83e-05	0.031	GCCACGCCCTGT
SP8	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	71	82	+	11.0789	5.83e-05	0.031	ACCAACCCCACT
Foxq1	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	81	91	+	11.8265	5.83e-05	1	CAAAGTTTATA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	15	26	+	10.931	5.83e-05	0.365	CCGCCCACCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	15	26	+	10.931	5.83e-05	0.365	CCGCCCACCGCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	15	26	+	10.931	5.83e-05	0.365	CCGCCCACCGCC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	15	26	+	10.931	5.83e-05	0.365	CCGCCCACCGCC
SP3	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	20	30	+	11.2439	5.83e-05	0.0219	ACCCCACCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	62	72	+	11.2439	5.83e-05	0.0219	CCCACCCCCAT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	13	23	-	11.2439	5.83e-05	0.0219	TCCACCCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	13	23	-	11.2439	5.83e-05	0.0219	TCCACCCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	13	23	-	11.2439	5.83e-05	0.0219	TCCACCCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	29	39	-	11.2439	5.83e-05	0.0219	TCCACCCCCAC
SPIC	FLIPPED__Enhancer.flip.antisense__chr9:36731622..36731736,+__2605.1.0.0	70	83	+	11.1127	5.83e-05	0.254	ACAAAAGGGAAGTG
SPIC	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	84	97	+	11.1127	5.83e-05	0.254	CGGAACGGGAAGAA
SPIC	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	18	31	-	11.1127	5.83e-05	0.254	CGGAACGGGAAGAA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.1.0	32	45	-	11.1127	5.83e-05	0.254	ACAAAAGGGAAGTG
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.0.0	32	45	-	11.1127	5.83e-05	0.254	ACAAAAGGGAAGTG
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	32	45	-	11.1127	5.83e-05	0.254	ACAAAAGGGAAGTG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	32	45	-	11.1127	5.83e-05	0.254	ACAAAAGGGAAGTG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	+	10.4426	5.83e-05	0.0641	AGCCTTGTGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	+	10.4426	5.83e-05	0.0641	AGCCTTGTGGGCG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	+	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	17	29	-	10.4426	5.83e-05	0.0641	CGCCGCGAGGGCC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	43	55	+	10.4426	5.83e-05	0.0641	CGCCGCGAGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	-	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	-	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	+	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	60	72	-	10.4426	5.83e-05	0.0641	CGCCGCGAGGGCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	86	98	+	10.4426	5.83e-05	0.0641	CGCCGCGAGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	-	10.4426	5.83e-05	0.0641	AGCCTTGTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	-	10.4426	5.83e-05	0.0641	AGCCTTGTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	-	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	-	10.4426	5.83e-05	0.0641	AGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	97	109	+	10.4426	5.83e-05	0.0641	CGCCTCTGCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	-	10.6393	5.83e-05	0.0586	GCCCCAGAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	-	10.6393	5.83e-05	0.0586	GCCCCAGAGGGCT
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	+	9.59091	5.83e-05	0.331	TGTTGACATAGTAACT
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	11	20	-	11.6404	5.83e-05	0.871	CTGGCCTGAC
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	11	20	-	11.6404	5.83e-05	0.871	CTGGCCTGAC
JUND	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	25	35	+	10.9787	5.83e-05	0.219	GATGATTCATA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	53	67	+	8.51429	5.83e-05	0.11	TAAATCCCGCTGTGT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	41	55	-	8.51429	5.83e-05	0.11	TAAATCCCGCTGTGT
JDP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	15	23	-	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	15	23	-	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	31	39	+	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	31	39	+	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	77	85	-	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	87	95	-	10.1034	5.84e-05	0.287	ATGACTAAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	87	95	-	10.1034	5.84e-05	0.287	ATGACTAAT
KLF13	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	63	80	+	5.15517	5.84e-05	0.289	CAGCCGCGCCCCCAGCCG
KLF13	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	35	52	-	5.15517	5.84e-05	0.289	CAGCCGCGCCCCCAGCCG
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	19	29	+	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	19	29	+	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	19	29	+	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	19	29	+	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	26	36	+	11.1818	5.84e-05	0.0469	CGTCACGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	69	79	+	11.1818	5.84e-05	0.0469	GCCCACTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	69	79	+	11.1818	5.84e-05	0.0469	GCCCACTCCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	103	113	+	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	2	12	-	11.1818	5.84e-05	0.0469	GCCCACTCCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	9	19	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	37	47	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	37	47	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	37	47	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	37	47	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	37	47	-	11.1818	5.84e-05	0.0469	GCCCCCACCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	1	10	-	11.4694	5.84e-05	0.022	GTCACGCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	7	16	-	11.4694	5.84e-05	0.022	GTCACGCCCT
ZIC4	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	57	71	-	10.6364	5.84e-05	0.109	TGCGCCCTGCGGTCC
Klf12	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	33	47	-	8.70492	5.84e-05	0.0638	CACCACTCCCACTTC
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	18	28	+	11.7115	5.84e-05	0.39	CTTATGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	18	28	+	11.7115	5.84e-05	0.39	CTTATGACTCA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	78	88	-	11.7115	5.84e-05	0.39	AGTATGACTAA
MTF1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	51	64	-	6.70732	5.84e-05	0.5	TTTCCAGACGTTGC
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	97	111	+	11.4	5.84e-05	1	GCTAGTCATCAATTT
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	97	111	+	11.4	5.84e-05	1	GCTAGTCATCAATTT
Hes1	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	90	99	+	10.049	5.84e-05	0.101	GACACGCGTG
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	8.55769	5.84e-05	0.184	ATCACGTGCA
TBX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	62	72	-	11.3455	5.84e-05	1	GTGGTGTGAAT
TBX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	62	72	-	11.3455	5.84e-05	1	GTGGTGTGAAT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	61	71	-	11.2857	5.84e-05	0.193	GTCATGTGGCT
USF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	93	103	-	11.2857	5.84e-05	0.193	GTCATGTGGCT
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	93	103	-	11.2857	5.84e-05	0.193	GTCATGTGGCT
JUN	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	35	47	+	10.7755	5.84e-05	0.303	TTGGTGACGTCAG
JUN	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	68	80	-	10.7755	5.84e-05	0.303	TTGGTGACGTCAG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	+	11.4545	5.84e-05	0.0893	CGCCGCCGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	41	52	+	11.4545	5.84e-05	0.0893	CGCCCCCCGGCT
TFAP2B	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	63	74	-	11.4545	5.84e-05	0.0893	CGCCCCCCGGCT
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	5	15	-	11.7818	5.84e-05	0.721	ACCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	5	15	-	11.7818	5.84e-05	0.721	ACCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	5	15	-	11.7818	5.84e-05	0.721	ACCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	5	15	-	11.7818	5.84e-05	0.721	ACCCACTCAGC
Nkx2-5(var.2)	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	36	46	-	11.7818	5.84e-05	0.721	AGCCTCTCATC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	69	79	+	11.7818	5.84e-05	0.721	AGCCTCTCATC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	69	79	+	11.7818	5.84e-05	0.721	AGCCTCTCATC
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	75	88	-	10.0714	5.84e-05	0.255	GTGTCACGTGACGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	75	88	-	10.0714	5.84e-05	0.255	GTGTCACGTGACGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	35	48	+	10.0714	5.84e-05	0.255	GTGTCACGTGACGG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	35	48	+	10.0714	5.84e-05	0.255	GTGTCACGTGACGG
CREB3	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	81	94	+	10.0714	5.84e-05	0.255	ATACCACGTAACCC
HLTF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	72	81	+	8.7561	5.84e-05	1	AACCATATGC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	12	23	-	11.398	5.84e-05	0.0866	CGCCCCCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	12	23	-	11.398	5.84e-05	0.0866	CGCCCCCGGCCT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	12	23	-	11.398	5.84e-05	0.0866	CGCCCCCGGCCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	12	23	-	11.398	5.84e-05	0.0866	CGCCCCCGGCCT
TFAP2C	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	54	+	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	61	72	-	11.398	5.84e-05	0.0866	TGCCCGCGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	92	103	+	11.398	5.84e-05	0.0866	TACCTGGAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	92	103	+	11.398	5.84e-05	0.0866	TACCTGGAGGCA
Pax6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	49	62	-	10.8667	5.84e-05	1	TTTCTGCATCACTG
Pax6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	49	62	-	10.8667	5.84e-05	1	TTTCTGCATCACTG
Pax6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	49	62	-	10.8667	5.84e-05	1	TTTCTGCATCACTG
Pax6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	49	62	-	10.8667	5.84e-05	1	TTTCTGCATCACTG
Pax6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	49	62	-	10.8667	5.84e-05	1	TTTCTGCATCACTG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	-	11.4615	5.84e-05	0.0744	AGCCCGAGGGT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	-	11.4615	5.84e-05	0.0744	TGCCCGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	-	11.4615	5.84e-05	0.0744	TGCCCGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	-	11.4615	5.84e-05	0.0744	TGCCCGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	-	11.4615	5.84e-05	0.0744	TGCCCGAGGGA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	+	11.4615	5.84e-05	0.0744	TGCCCGAGGGA
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	7	18	-	11.3253	5.84e-05	1	TTATGCAAAAAT
KLF16	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	8	18	+	10.8103	5.84e-05	0.0207	GCCACGCCTAT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	85	+	10.8103	5.84e-05	0.0207	TCCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	85	+	10.8103	5.84e-05	0.0207	TCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	85	+	10.8103	5.84e-05	0.0207	TCCCCACCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	1	11	-	10.8103	5.84e-05	0.0207	TCCCCACCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	3	13	-	10.8103	5.84e-05	0.0207	TCCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	16	26	-	10.8103	5.84e-05	0.0207	GCTCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	16	26	-	10.8103	5.84e-05	0.0207	GCTCCACCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	31	41	-	10.8103	5.84e-05	0.0207	GCTCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	97	107	-	10.8103	5.84e-05	0.0207	GCCACGCCTAT
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	93	109	-	7.08621	5.85e-05	0.882	GGGCACAGGGTCTCCCG
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	93	109	-	7.08621	5.85e-05	0.882	GGGCACAGGGTCTCCCG
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	93	109	-	7.08621	5.85e-05	0.882	GGGCACAGGGTCTCCCG
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	93	109	-	7.08621	5.85e-05	0.882	GGGCACAGGGTCTCCCG
Ar	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	93	109	-	7.08621	5.85e-05	0.882	GGGCACAGGGTCTCCCG
PRDM1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	26	40	+	10.6727	5.85e-05	0.315	AGGAAGTGAAACGAG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	66	80	-	10.6727	5.85e-05	0.315	TGAAAGAGAAAACAA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	75	89	-	10.6727	5.85e-05	0.315	AGGAAGTGAAACGAG
ATF4	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	32	44	-	10.1148	5.85e-05	0.591	GAGTGTTGCAACA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	96	108	+	10.1148	5.85e-05	0.591	GAGTGTTGCAACA
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	98	108	-	10.8197	5.85e-05	0.168	CAGCGGAAATC
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	98	108	-	10.8197	5.85e-05	0.168	CAGCGGAAATC
ETV2	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	7	17	+	10.8197	5.85e-05	0.168	CAGCGGAAATC
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	11.7258	5.85e-05	1	ACCATATGTA
BARHL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	35	44	-	10.76	5.85e-05	1	CTTAAACGCT
BARHL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	35	44	-	10.76	5.85e-05	1	CTTAAACGCT
NRF1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	11	21	+	10.4182	5.85e-05	0.0192	GCGTCGGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	34	44	+	10.4182	5.85e-05	0.0192	ACGCTCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	71	81	-	10.4182	5.85e-05	0.0192	ACGCTCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	71	81	-	10.4182	5.85e-05	0.0192	ACGCTCGCGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	80	90	+	11.5455	5.85e-05	0.0551	AGCCTCCAGCG
Crx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.1	16	26	-	11.4828	5.85e-05	1	GGTAGGATTAG
EGR3	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	14	28	+	6.84483	5.85e-05	0.0394	GACAGCCCCCGCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	46	60	-	6.84483	5.85e-05	0.0394	CCCCGCTCCCACACG
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	67	81	+	6.84483	5.85e-05	0.0394	CGCCGCCGCCGCCAC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	63	77	-	6.84483	5.85e-05	0.0394	CGCCGCCGCCGCCAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	69	83	-	6.84483	5.85e-05	0.0394	CGCCGCCGCCGCCAC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	83	97	+	6.84483	5.85e-05	0.0394	GACAGCCCCCGCGCA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	89	103	+	6.84483	5.85e-05	0.0394	CCCCGCCCGCTCAGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	89	103	+	6.84483	5.85e-05	0.0394	CCCCGCCCGCTCAGC
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	9	23	+	9.71429	5.85e-05	0.122	AGGGGACAGAGGGAA
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	16	-	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	16	-	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	16	-	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	16	-	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	16	-	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	10	24	-	9.71429	5.85e-05	0.122	CGGGGGCGGGGGCCT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	73	87	+	9.71429	5.85e-05	0.122	AGGCGTCAGAGAGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	73	87	+	9.71429	5.85e-05	0.122	AGGCGTCAGAGAGCG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	113	+	9.71429	5.85e-05	0.122	GGGGGGGGGGGGGGA
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	16	29	+	8.57377	5.85e-05	0.185	GCCCCCACGTGATC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	16	29	+	8.57377	5.85e-05	0.185	GCCCCCACGTGATC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	16	29	+	8.57377	5.85e-05	0.185	GCCCCCACGTGATC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	16	29	+	8.57377	5.85e-05	0.185	GCCCCCACGTGATC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	16	29	+	8.57377	5.85e-05	0.185	GCCCCCACGTGATC
GLIS2	FLIPPED__mrna.flip.antisense__chr11:62432704..62432818,-__2815.1.0.0	35	48	+	8.57377	5.85e-05	0.185	GGCCTCCCGCACCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	31	44	-	8.57377	5.85e-05	0.185	GCCCCCCCCCCTCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	46	59	-	8.57377	5.85e-05	0.185	CACCCCCAACAGCT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	46	59	-	8.57377	5.85e-05	0.185	CACCCCCAACAGCT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:62432704..62432818,+__1469.1.0.0	67	80	-	8.57377	5.85e-05	0.185	GGCCTCCCGCACCG
GLI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	64	75	+	10.6724	5.85e-05	0.33	GGGGCCACCCTG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	64	75	+	10.6724	5.85e-05	0.33	GGGGCCACCCTG
GLI2	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	71	82	+	10.6724	5.85e-05	0.33	GGGGCCACCCTG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	29	40	-	10.6724	5.85e-05	0.33	GGGGCCACCCTG
GLI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	29	40	-	10.6724	5.85e-05	0.33	GGGGCCACCCTG
JUND(var.2)	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	22	36	+	10.9787	5.85e-05	0.32	GTGGCTGACGTCATC
NKX3-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	75	83	+	11.75	5.85e-05	1	AGCACTTAG
NKX3-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	75	83	+	11.75	5.85e-05	1	AGCACTTAG
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	75	83	+	11.75	5.85e-05	1	AGCACTTAG
PLAG1	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	57	70	-	6.08163	5.85e-05	0.0723	GACGGGAAAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	45	58	+	6.08163	5.85e-05	0.0723	GACGGGAAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	45	58	+	6.08163	5.85e-05	0.0723	GACGGGAAAGGGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	85	98	+	6.78723	5.85e-05	0.0995	CGACGCCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	85	98	+	6.78723	5.85e-05	0.0995	CGACGCCCGCGGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	36	50	+	10.7241	5.85e-05	0.0135	TCCCCTCCTCGCGCT
HEY2	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	12	21	+	11.1724	5.85e-05	0.199	GGCGCGTGTG
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	77	86	+	11.1724	5.85e-05	0.199	GCGACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	77	86	+	11.1724	5.85e-05	0.199	GCGACGTGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	85	96	-	11.4909	5.85e-05	0.0567	CGCCCTGAGCCT
Pparg::Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	25	39	+	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	25	39	+	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
Pparg::Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	25	39	+	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	25	39	+	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
Pparg::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	25	39	+	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	26	40	+	11.0631	5.86e-05	0.182	CAGGGGGAGAGGCCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	26	40	+	11.0631	5.86e-05	0.182	CAGGGGGAGAGGCCG
Pparg::Rxra	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	76	90	-	11.0631	5.86e-05	0.182	GGAGGGCAGGAGCCA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	75	91	+	10.102	5.86e-05	0.368	AGGTCACACAGCTGGGA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	11.7692	5.86e-05	0.137	ACCGGATGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	11.7692	5.86e-05	0.137	ACCGGATGCT
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	11.7692	5.86e-05	0.137	ACCGGAACTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	11.7692	5.86e-05	0.137	ACCGGAACTG
YY1	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	88	99	+	10.9038	5.86e-05	0.277	GAGGATGGCAGC
POU2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	31	42	+	11.4	5.86e-05	1	CAAATGCAAATG
Dmbx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	32	48	+	11.6184	5.86e-05	1	ATAACAGGCTTAGGCAG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	39	48	+	11.5769	5.86e-05	0.102	CGCGGAAGGG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	39	48	+	11.5769	5.86e-05	0.102	CGCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	55	64	+	11.5769	5.86e-05	0.102	CGCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	55	64	+	11.5769	5.86e-05	0.102	CGCGGAAGGG
ETV6	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	95	104	-	11.5769	5.86e-05	0.102	CGCGGAAGGG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	32	+	12.102	5.86e-05	0.182	GACAGGTGGGC
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	32	+	12.102	5.86e-05	0.182	GACAGGTGGGC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	48	61	+	9.17241	5.86e-05	0.0337	GGGCACACCCACGT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	68	81	-	9.17241	5.86e-05	0.0337	GGGCACACCCACGT
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	55	64	-	11.2929	5.86e-05	0.312	CGGCATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	55	64	-	11.2929	5.86e-05	0.312	CGGCATTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	55	64	-	11.2929	5.86e-05	0.312	CGGCATTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	55	64	-	11.2929	5.86e-05	0.312	CGGCATTTCC
CTCF	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	33	51	-	9.03279	5.86e-05	0.119	TGGCCTGTGGGAGGAGCGC
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	19	28	-	11.8361	5.86e-05	0.905	ACAACTGACA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	19	28	-	11.8361	5.86e-05	0.905	ACAACTGACA
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	64	72	+	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	64	72	+	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	64	72	+	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	64	72	+	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	83	91	+	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	106	114	-	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	106	114	-	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	106	114	-	11.4038	5.86e-05	0.516	GTGCCAGCG
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	106	114	-	11.4038	5.86e-05	0.516	GTGCCAGCG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	17	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	17	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	16	23	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	17	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	17	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	22	29	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	22	29	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	16	23	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	31	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	31	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	31	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	31	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	22	29	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	22	29	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	37	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	31	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	31	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	31	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	31	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	39	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	39	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	39	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	39	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	39	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	37	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	39	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	39	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	39	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	39	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	39	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	85	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	91	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	85	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	91	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	99	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	104	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	105	+	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	99	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	104	-	12.7049	5.86e-05	0.275	CCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	105	-	12.7049	5.86e-05	0.275	CCACGTGG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	17	28	+	10.9138	5.86e-05	0.365	TGGACCACCCCA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	17	28	+	10.9138	5.86e-05	0.365	TGGACCACCCCA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	17	28	+	10.9138	5.86e-05	0.365	TGGACCACCCCA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	17	28	+	10.9138	5.86e-05	0.365	TGGACCACCCCA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	17	28	+	10.9138	5.86e-05	0.365	TGGACCACCCCA
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	+	10.3163	5.86e-05	0.177	TGCCGGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	+	10.3163	5.86e-05	0.177	TGCCGGGGGGCG
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	10	19	+	10.8991	5.86e-05	0.0553	CCCCCCCTAA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	72	81	+	10.8991	5.86e-05	0.0553	CCCCCCCTAA
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	45	56	+	10.5738	5.86e-05	0.129	AAACCGGAACTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	45	56	+	10.5738	5.86e-05	0.129	AAACCGGAACTG
EHF	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	91	102	+	10.5738	5.86e-05	0.129	TTCCCGGAAGCC
EHF	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	24	-	10.5738	5.86e-05	0.129	TTCCCGGAAGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	32	44	+	10.2931	5.86e-05	0.0554	GCCCCTGTGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	77	89	-	10.2931	5.86e-05	0.0554	GCCCCTGTGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	-	10.2931	5.86e-05	0.0554	GGCCGCGCGGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	15	35	-	9.91837	5.86e-05	0.0184	GAGGCCGGGCTGGCGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	15	35	-	9.91837	5.86e-05	0.0184	AGGGGAGGGGGGTCGGGTGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	15	35	-	9.91837	5.86e-05	0.0184	AGGGGAGGGGGGTCGGGTGCC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	47	67	-	9.91837	5.86e-05	0.0184	GAGGCCGGGCTGGCGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	48	68	-	9.91837	5.86e-05	0.0184	CAGGGGGGGGGGGCGGGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	20	40	+	9.91837	5.86e-05	0.0184	GAGGCTGGGGGTGGGGAAGTG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	48	68	+	9.91837	5.86e-05	0.0184	GAGGCCGGGCTGGCGGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	93	113	+	9.91837	5.86e-05	0.0184	AGGGGTTGGAGGAAGGGTAGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	89	106	+	-12.8947	5.86e-05	0.0505	TGATGTAAGTGAGGAAGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	9	26	-	-12.8947	5.86e-05	0.0505	TGATGTAAGTGAGGAAGG
Stat6	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	32	46	+	11.2586	5.86e-05	0.743	CACTTCAGGGGAAAT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	85	+	12.0816	5.86e-05	0.172	CACAGCTGTCGAC
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	85	+	12.0816	5.86e-05	0.172	CACAGCTGTCGAC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	7	19	-	12.0816	5.86e-05	0.172	GTCAGCTGCCTTT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	7	19	-	12.0816	5.86e-05	0.172	GTCAGCTGCCTTT
Myod1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	30	42	-	12.0816	5.86e-05	0.172	CACAGCTGTCGAC
IRF2	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	29	46	-	5.63303	5.86e-05	0.626	AGAAAGCGAATGCAAGCC
SP3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	49	59	+	11.2358	5.86e-05	0.0219	CCAACTCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	99	109	-	11.2358	5.86e-05	0.0219	CCAACTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	99	109	-	11.2358	5.86e-05	0.0219	CCAACTCCCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	90	109	-	4.18349	5.86e-05	0.0608	AGGCAACACACCACCTGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	90	109	-	4.18349	5.86e-05	0.0608	AGGCAACACACCACCTGCCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	90	109	-	4.18349	5.86e-05	0.0608	AGGCAACACACCACCTGCCC
Foxj3	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	97	113	+	11.4675	5.86e-05	1	TGCCAATAAACAACAGC
NR3C1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	74	90	+	5.73469	5.86e-05	1	CGGTCCACTCTGTCCCC
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	73	86	-	6.07143	5.86e-05	0.0723	GGGGCCTGTGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	5	18	+	6.07143	5.86e-05	0.0723	GGGGCCTGTGGGGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	15	26	+	11.0658	5.87e-05	0.0311	GCCACACCCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	15	26	+	11.0658	5.87e-05	0.0311	GCCACACCCTCT
SP8	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	15	26	-	11.0658	5.87e-05	0.0311	CACCCGCCCCGC
SP8	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	36	47	+	11.0658	5.87e-05	0.0311	CCCACACCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	29	40	-	11.0658	5.87e-05	0.0311	CACCCGCCCCGC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	36	45	-	10.6939	5.87e-05	0.888	ATTACGAAAT
RXRB	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	28	41	-	1.25455	5.87e-05	0.515	GGGTTCAAAGTAGA
RXRB	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	44	57	+	1.25455	5.87e-05	0.515	GGGTTCAAAGTAGA
RXRB	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	74	87	+	1.25455	5.87e-05	0.515	GGGTTCAAAGTAGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	64	78	-	8.5	5.87e-05	0.111	AGCTCCCCACAGCGC
STAT3	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	5	15	+	11.3061	5.87e-05	0.3	CTTCCAGGAAC
STAT3	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	30	40	+	11.3061	5.87e-05	0.3	CTTCCAGGAAC
STAT3	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	75	85	-	11.3061	5.87e-05	0.3	CTTCCAGGAAC
STAT3	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	100	110	-	11.3061	5.87e-05	0.3	CTTCCAGGAAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	79	92	-	11.5192	5.87e-05	0.223	ATCCAGTGACTCAC
SMAD2::SMAD3::SMAD4	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	13	25	-	11.0656	5.87e-05	0.359	CTGGCTCTCGCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	90	102	+	11.0656	5.87e-05	0.359	CTGGCTCTCGCCT
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	23	37	+	10.5909	5.87e-05	0.108	TTCCCGCGGTCCCGT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	23	37	+	10.5909	5.87e-05	0.108	CTCTCACGTGACGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	23	37	+	10.5909	5.87e-05	0.108	CTCTCACGTGACGTC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	23	37	+	10.5909	5.87e-05	0.108	CTCTCACGTGACGTC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	15	25	+	11.1667	5.87e-05	0.0469	AACCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	15	25	+	11.1667	5.87e-05	0.0469	AACCCCTCCCA
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	56	65	-	11.2182	5.87e-05	0.655	ATCAGCTGGG
HES7	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	2	13	+	3.82759	5.87e-05	0.189	CGGCGCCTGCCA
HES7	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	12	23	-	3.82759	5.87e-05	0.189	CTGCACGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	102	113	-	3.82759	5.87e-05	0.189	CGGCGCCTGCCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	102	113	-	3.82759	5.87e-05	0.189	CGGCGCCTGCCA
FOXP1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	33	47	+	11.3099	5.87e-05	0.341	CAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	65	79	-	11.3099	5.87e-05	0.341	CAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	68	82	-	11.3099	5.87e-05	0.341	CAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	68	82	-	11.3099	5.87e-05	0.341	CAAAAAAAAAAAAAA
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	16	26	+	11	5.87e-05	0.209	GGGTGGGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	22	32	-	11	5.87e-05	0.209	GAGTGATTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	56	66	-	11	5.87e-05	0.209	GGGTGGGTCAC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	87	97	+	11	5.87e-05	0.209	GAGTGATTCAT
NR3C2	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	62	78	+	5.57447	5.87e-05	1	GGGCCCAGGGTGTCCCC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	-	11.75	5.87e-05	0.28	TACACGTGAC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	25	35	+	11.1967	5.87e-05	0.0612	GCGGAAATGGT
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	25	35	+	11.1967	5.87e-05	0.0612	GCGGAAATGGT
EGR1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	23	36	-	10.5769	5.87e-05	0.0233	CGGCCTCCCTCTCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	34	47	-	10.5769	5.87e-05	0.0233	CTATCGCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	68	81	-	10.5769	5.87e-05	0.0233	CTGCTGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	2	15	+	10.5769	5.87e-05	0.0233	TCCACGCCCCTACC
EGR1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	79	92	+	10.5769	5.87e-05	0.0233	CGGCCTCCCTCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	84	97	+	10.5769	5.87e-05	0.0233	CTGCTGCCGCCGCC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	25	40	+	-1.59184	5.87e-05	0.877	CAGGTCATCAGGACAG
Rarg	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	21	36	-	-1.59184	5.87e-05	0.877	CAGGTCATCAGGACAG
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	16	29	-	11.1212	5.87e-05	0.0583	AGATGCCAGGCCTC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	30	48	+	10.7903	5.87e-05	0.147	AGGCGCGGCAAGCCGTGAG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	30	48	+	10.7903	5.87e-05	0.147	AGGCGCGGCAAGCCGTGAG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	75	93	-	10.7903	5.87e-05	0.147	AGGCGCGGCAAGCCGTGAG
PAX5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	75	93	-	10.7903	5.87e-05	0.147	AGGCGCGGCAAGCCGTGAG
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	74	84	-	11.4273	5.87e-05	0.77	AGGTTAACAGA
SP1	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	10	20	-	11.25	5.87e-05	0.0154	ACCCCGCCCTG
SP1	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	95	105	+	11.25	5.87e-05	0.0154	ACCCCGCCCTG
ERF	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	11.2857	5.87e-05	0.106	ACCGGAAACT
ERF	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	11.2857	5.87e-05	0.106	ACCGGAAACT
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	72	83	+	11.3871	5.87e-05	0.281	GCACCCACCCAG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	36	47	-	3.31034	5.87e-05	0.298	TGGCACGAGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	36	47	-	3.31034	5.87e-05	0.298	TGGCACGAGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	78	89	-	3.31034	5.87e-05	0.298	TGGCACGAGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	78	89	-	3.31034	5.87e-05	0.298	TGGCACGAGCCC
GCM2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	46	55	+	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	52	61	+	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	52	61	+	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	52	61	+	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	24	33	-	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	24	33	-	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	54	63	-	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	60	69	-	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	60	69	-	11.3934	5.87e-05	0.718	GATGCGGGGG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	60	69	-	11.3934	5.87e-05	0.718	GATGCGGGGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	5	22	+	-12.9079	5.87e-05	0.0505	GAACAGTAGGAGGGAAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	16	33	+	-12.9079	5.87e-05	0.0505	GGAATGGGGACAGGCAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	16	33	+	-12.9079	5.87e-05	0.0505	GGAATGGGGACAGGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	66	83	-	-12.9079	5.87e-05	0.0505	AGGAAAGAGGAAGGGAGG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	74	86	+	2.73469	5.87e-05	0.253	GGGTGAATCCCAG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	74	86	+	2.73469	5.87e-05	0.253	GGGTGAATCCCAG
ERG	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
ERG	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	80	89	+	11.6727	5.87e-05	0.125	AACGGAAATC
ERG	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	11.6727	5.87e-05	0.125	GCCGGAAGCA
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr15:60547657..60547771,-__2056.1.0.0	50	62	+	11.3016	5.87e-05	1	AAATATAAATCAC
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	60	73	+	8.93939	5.87e-05	0.303	CAGCCACGTGACTG
Myc	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	14	23	-	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	41	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	41	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	41	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	41	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	41	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Myc	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	101	+	12.1455	5.87e-05	0.411	CCACGTGGAG
Gmeb1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	73	89	+	10.8684	5.88e-05	0.653	GCGGTGACGTCACCGCG
Gmeb1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	26	42	-	10.8684	5.88e-05	0.653	GCGGTGACGTCACCGCG
MYF6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	10.9091	5.88e-05	1	GACACCTGTC
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	10.9091	5.88e-05	1	GACACCTGTC
MYF6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	10.9091	5.88e-05	1	GACACCTGTC
E2F6	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	97	107	+	11.5517	5.88e-05	0.0671	GAGAGGGAGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	22	32	-	9.82759	5.88e-05	0.0825	ACGCCCCTGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	22	32	-	9.82759	5.88e-05	0.0825	ACGCCCCTGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	57	67	-	9.82759	5.88e-05	0.0825	CCAGCCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	57	67	-	9.82759	5.88e-05	0.0825	CCAGCCACGCA
EGR2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	84	94	+	9.82759	5.88e-05	0.0825	CCTCCCACACA
RARA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	68	85	-	-8.77273	5.88e-05	1	GGGTTCAAAACTTCGGGT
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	68	85	-	-8.77273	5.88e-05	1	GGGTTCAAAACTTCGGGT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	79	91	+	10.623	5.88e-05	0.0586	TGCCGCGGCGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	24	36	-	10.623	5.88e-05	0.0586	TGCCGCGGCGGCG
RREB1	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	35	54	-	4.17431	5.88e-05	0.0608	CAACCACTGACCAAACTCCA
RREB1	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	61	80	+	4.17431	5.88e-05	0.0608	CAACCACTGACCAAACTCCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	92	111	+	4.17431	5.88e-05	0.0608	ACCCACCCCACCCGGCTGCC
EBF1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	91	104	+	9.4918	5.88e-05	0.365	ATCCCCAGAGGAAC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	55	69	+	9.92424	5.88e-05	0.306	AAAGTTCCTCTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	55	69	+	9.92424	5.88e-05	0.306	AAAGTTCCTCTTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	37	51	-	9.92424	5.88e-05	0.306	AAAGTTCCTCTTCCC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	37	51	-	9.92424	5.88e-05	0.306	AAAGTTCCTCTTCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	1	15	+	6.82759	5.88e-05	0.0395	CGCCGGCCACGCCCA
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	28	42	-	6.82759	5.88e-05	0.0395	TTCCCCCTCCGCGCA
SPIC	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	6	19	+	11.0986	5.88e-05	0.254	CAAAACAGAAAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	63	76	-	11.0986	5.88e-05	0.254	CAAAACAGAAAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	63	76	-	11.0986	5.88e-05	0.254	CAAAACAGAAAGCA
SPIC	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	79	92	-	11.0986	5.88e-05	0.254	TAAAAGCGAAAGGA
LMX1B	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	-	9.97368	5.88e-05	1	GTAATTAA
LMX1B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	+	9.97368	5.88e-05	1	GTAATTAA
LMX1B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	+	9.97368	5.88e-05	1	GTAATTAA
LMX1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	+	9.97368	5.88e-05	1	GTAATTAA
LMX1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	+	9.97368	5.88e-05	1	GTAATTAA
LMX1B	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	+	9.97368	5.88e-05	1	GTAATTAA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	23	35	+	8.66667	5.88e-05	0.264	AGGGGCGGCCCCC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	84	96	+	8.66667	5.88e-05	0.264	TGGGAGTCTCCCC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	19	31	-	8.66667	5.88e-05	0.264	TGGGAGTCTCCCC
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	24	37	-	6.82895	5.88e-05	0.56	CCGCCAGCTGCCGC
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	24	37	-	6.82895	5.88e-05	0.56	CCGCCAGCTGCCGC
Tcf21	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	50	63	-	6.82895	5.88e-05	0.56	AACACAGCTGTCTA
MAFG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	64	84	+	10.0714	5.88e-05	1	GCTCCGCTGAATCCGCGTTTC
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	64	84	+	10.0714	5.88e-05	1	GCTCCGCTGAATCCGCGTTTC
MAFG	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	31	51	-	10.0714	5.88e-05	1	GCTCCGCTGAATCCGCGTTTC
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	27	39	-	8.67241	5.88e-05	0.165	GAACCGGAAGAGA
USF2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	30	40	-	11.5714	5.88e-05	0.143	CTCATGTGACG
USF2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	75	85	+	11.5714	5.88e-05	0.143	CTCATGTGACG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	12	22	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	12	22	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	21	31	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	21	31	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	26	36	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	42	52	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	81	91	+	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	24	34	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	63	73	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	63	73	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	79	89	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	79	89	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	84	94	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	93	103	-	10.6364	5.88e-05	0.258	GCCCGGAAGTG
MNT	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	12.2273	5.88e-05	0.303	GACACGTGAC
MNT	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	12.2273	5.88e-05	0.303	GACACGTGAC
MNT	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	12.2273	5.88e-05	0.303	GACACGTGAC
MNT	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	12.2273	5.88e-05	0.303	GACACGTGAC
MNT	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	12.2273	5.88e-05	0.303	GACACGTGAC
MNT	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	12.2273	5.88e-05	0.303	GACACGTGAC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	28	44	+	4.32727	5.88e-05	0.0287	CCGCCCCCGCCTCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	28	44	+	4.32727	5.88e-05	0.0287	CCGCCCCCGCCTCCTCC
SP4	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	30	46	+	4.32727	5.88e-05	0.0287	CCCACCCCGCCTACCAC
SP4	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	57	73	+	4.32727	5.88e-05	0.0287	CCCACCCCGCCTACCAC
SP4	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	51	67	-	4.32727	5.88e-05	0.0287	AGCGCCCCTCCCCCCAC
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	42	55	-	6.06122	5.88e-05	0.0723	GTGGGGGTGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	42	55	-	6.06122	5.88e-05	0.0723	GTGGGGGTGGGGTG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	7	20	+	6.06122	5.88e-05	0.0723	GTGGGGGTGGGGTG
TBX21	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	26	35	+	11.0364	5.88e-05	1	CAGGTGCGAA
TBX21	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	26	35	+	11.0364	5.88e-05	1	CAGGTGCGAA
TBX21	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	26	35	+	11.0364	5.88e-05	1	CAGGTGCGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	26	35	+	11.0364	5.88e-05	1	CAGGTGCGAA
TBX21	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	26	35	+	11.0364	5.88e-05	1	CAGGTGCGAA
TBX21	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	80	89	-	11.0364	5.88e-05	1	CAGGTGCGAA
ELK3	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	11.5	5.88e-05	0.112	TCCGGAAATA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	11.5	5.88e-05	0.112	TCCGGAAATA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	11.5	5.88e-05	0.112	TCCGGAAATA
ELK3	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	11.5	5.88e-05	0.112	TCCGGAAATA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	25	35	+	11.4697	5.88e-05	0.336	GGGCGCCATTT
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	25	35	+	11.4697	5.88e-05	0.336	GGGCGCCATTT
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	10.5957	5.88e-05	0.0923	GGCGGAAGTA
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	10.5957	5.88e-05	0.0923	GGCGGAAGTA
ELK1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	10.5957	5.88e-05	0.0923	GGCGGAAGTA
ELK1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	10.5957	5.88e-05	0.0923	GGCGGAAGTA
TP63	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	37	54	+	-1.27586	5.88e-05	0.93	TACATGCTGGTATATGTC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	32	+	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	59	+	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	60	+	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	92	+	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	103	113	+	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	2	12	-	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	19	29	-	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	22	32	-	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	23	33	-	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
KLF16	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	55	65	-	10.7931	5.88e-05	0.0207	GCCCCTCCCTC
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	28	42	+	9.7	5.88e-05	0.122	AGGGGGCGGAGTGTG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	35	-	9.7	5.88e-05	0.122	GGGGGGGGGGGGTGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	35	-	9.7	5.88e-05	0.122	GGGGGGGGGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	26	40	-	9.7	5.88e-05	0.122	GGGGGGGGGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	55	69	+	9.7	5.88e-05	0.122	GAAGGGGGGAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	55	69	+	9.7	5.88e-05	0.122	GAAGGGGGGAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	63	77	-	9.7	5.88e-05	0.122	GAAGGGGGGAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	63	77	-	9.7	5.88e-05	0.122	GAAGGGGGGAGGCCG
RELA	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	35	44	-	10.5102	5.88e-05	0.225	CTGAGTTTCC
RELA	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	71	80	+	10.5102	5.88e-05	0.225	CTGAGTTTCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	+	11.3818	5.89e-05	0.0702	TGCCTGAAGCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	66	77	+	3.59016	5.89e-05	0.598	TGGCAGCTGCAA
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	66	77	+	3.59016	5.89e-05	0.598	TGGCAGCTGCAA
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	37	52	-	2.03448	5.89e-05	0.349	TAACCAGAATCCCAAG
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	37	52	-	2.03448	5.89e-05	0.349	TAACCAGAATCCCAAG
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	83	93	-	11.6731	5.89e-05	1	GCTAATACACA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.1.0	8	22	+	11.0541	5.89e-05	0.182	GAAGGCCAAAGTGTA
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	43	57	-	11.0541	5.89e-05	0.182	GAGGGGAAAGGGGGA
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	6	18	+	10.7551	5.89e-05	0.303	CTGGTGACGTAAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	6	18	+	10.7551	5.89e-05	0.303	CTGGTGACGTAAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	6	18	+	10.7551	5.89e-05	0.303	CTGGTGACGTAAC
JUN	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	6	18	+	10.7551	5.89e-05	0.303	CTGGTGACGTAAC
JUN	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	16	28	+	10.7551	5.89e-05	0.303	GCGATGACCTCAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	26	38	+	10.7551	5.89e-05	0.303	CTGATGACGTAAG
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	26	38	+	10.7551	5.89e-05	0.303	CTGATGACGTAAG
JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	26	38	+	10.7551	5.89e-05	0.303	CTGATGACGTAAG
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	26	38	+	10.7551	5.89e-05	0.303	CTGATGACGTAAG
PBX1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	10	21	+	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	8	19	-	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	8	19	-	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	8	19	-	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	8	19	-	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	96	107	+	11.1122	5.89e-05	1	CAACCAATCAAG
PBX1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	94	105	-	11.1122	5.89e-05	1	CAACCAATCAAG
MLXIPL	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	11.8485	5.89e-05	0.279	AGCACGTGGC
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	11.8485	5.89e-05	0.279	AGCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	11.8485	5.89e-05	0.279	AGCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	11.8485	5.89e-05	0.279	AGCACGTGGC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.2.0	11	25	-	9.01639	5.89e-05	0.463	ATGACATAGCTCTTG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.2.0	87	101	+	9.01639	5.89e-05	0.463	ATGACATAGCTCTTG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	39	52	-	5.96939	5.89e-05	0.365	TGACCCCGCGCCAG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	41	54	+	5.96939	5.89e-05	0.365	TGACCCCGCGCCAG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	103	113	-	10.9362	5.89e-05	0.219	AGTGAGTCAGA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	103	113	-	10.9362	5.89e-05	0.219	AGTGAGTCAGA
NRF1	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	8	18	+	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	52	62	+	10.4	5.89e-05	0.0192	GAACCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	52	62	+	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	52	62	+	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	59	69	+	10.4	5.89e-05	0.0192	CCGCTGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	59	69	+	10.4	5.89e-05	0.0192	CCGCTGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	88	98	+	10.4	5.89e-05	0.0192	GAACCTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	104	114	+	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	1	11	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	1	11	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	46	56	-	10.4	5.89e-05	0.0192	CCGCTGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	53	63	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	97	107	-	10.4	5.89e-05	0.0192	GCGTGGGCGCG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	11	25	+	10.0758	5.89e-05	0.311	CAGCATGAGTCATCT
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	11	25	+	10.0758	5.89e-05	0.311	CAGCATGAGTCATCT
Gfi1b	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	7	17	+	11.4138	5.89e-05	0.521	CAATCACAGGC
Gfi1b	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	98	108	-	11.4138	5.89e-05	0.521	CAATCACAGGC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	97	110	+	-1.78182	5.89e-05	0.752	CAGAAAATGATACA
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	-	10.2759	5.89e-05	0.0554	GGCCGCCCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	68	80	+	10.2759	5.89e-05	0.0554	GCCCCCCTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	68	80	+	10.2759	5.89e-05	0.0554	GCCCCCCTGGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	+	10.2759	5.89e-05	0.0554	GGCCGCCCGGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	+	10.2759	5.89e-05	0.0554	AGCCCAGAAGGCG
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	65	77	-	10.0429	5.89e-05	0.729	GTGGCAGCTGTTG
TGIF1	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	61	72	-	0.884615	5.89e-05	0.932	TGAAAGCTGCCA
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	74	83	-	11.0694	5.89e-05	1	GCAGTAAAAA
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	54	63	+	11.0694	5.89e-05	1	GCAGTAAAAA
FOS	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	21	31	+	11.617	5.89e-05	0.232	TATGAGTCACA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	24	34	+	11.617	5.89e-05	0.232	TCTTACTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	+	11.617	5.89e-05	0.232	CGTGAGTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	+	11.617	5.89e-05	0.232	CGTGAGTCATG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	-	11.617	5.89e-05	0.232	CGTGAGTCATG
FOS	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	81	91	-	11.617	5.89e-05	0.232	TCTTACTCATT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	19	30	-	11.3878	5.89e-05	0.0866	CGCCCGGGGCCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	19	30	-	11.3878	5.89e-05	0.0866	CGCCCGGGGCCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	56	+	11.3878	5.89e-05	0.0866	CGCCCGGGGCCG
TFAP2C	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	59	70	-	11.3878	5.89e-05	0.0866	CGCCCGGGGCCG
SCRT2	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	25	37	-	7.2459	5.89e-05	0.89	GGGAAACAGGTGG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	43	54	+	11.4364	5.89e-05	0.0893	TCCCTCAGGGCC
TFAP2B	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	-	11.4364	5.89e-05	0.0893	GCCCCTAGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	39	50	-	11.4364	5.89e-05	0.0893	TCCCTCAGGGCC
Hand1::Tcf3	FLIPPED__Enhancer.flip.antisense__chr17:25821695..25821809,+__2544.1.0.0	5	14	+	11.5506	5.89e-05	0.93	TTTCTGGCAT
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	72	81	+	11.5506	5.89e-05	0.93	TTTCTGGCAT
Hand1::Tcf3	WILDTYPE__Enhancer.flip.sense__chr17:25821695..25821809,-__2061.1.0.0	101	110	-	11.5506	5.89e-05	0.93	TTTCTGGCAT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	6	25	+	4.16514	5.89e-05	0.0608	CATCCAAGCAAACCCAACCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	6	25	+	4.16514	5.89e-05	0.0608	CATCCAAGCAAACCCAACCC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	3	17	+	10.6182	5.9e-05	0.109	GCACCCCTGGGGTGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	3	17	+	10.6182	5.9e-05	0.109	GCACCCCTGGGGTGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	14	28	-	10.6182	5.9e-05	0.109	GCGCCCCCGCGGCCA
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	26	40	-	10.6182	5.9e-05	0.109	GCACCCCTGGGGTGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	26	40	-	10.6182	5.9e-05	0.109	GCACCCCTGGGGTGG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	88	102	-	10.6182	5.9e-05	0.109	GGCGTCCTGCTGTGG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	22	33	+	10.9848	5.9e-05	0.109	CCACGTCCCCCA
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	22	33	+	10.9848	5.9e-05	0.109	CCACGTCCCCCA
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	35	46	+	10.9848	5.9e-05	0.109	CCCGGTCCGCCC
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	12.1923	5.9e-05	0.298	AGCACGTGGA
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	12.1923	5.9e-05	0.298	AGCACGTGGA
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	14	23	+	11.0306	5.9e-05	0.243	GCTCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	14	23	+	11.0306	5.9e-05	0.243	GCTCACGTGG
Mitf	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	45	54	+	11.0306	5.9e-05	0.243	GCTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	94	103	+	11.0306	5.9e-05	0.243	GCTCACGTGG
Sox3	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	84	93	+	11.8966	5.9e-05	0.659	GCTTTGTCTG
Sox3	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	92	101	+	11.8966	5.9e-05	0.659	GCTTTGTCTG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	19	30	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	19	30	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	25	36	+	9.41818	5.9e-05	0.115	CAACAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	40	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	40	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	40	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	40	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	40	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	58	69	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	58	69	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	58	69	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	58	69	+	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	66	-	9.41818	5.9e-05	0.115	AGGGCGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	66	-	9.41818	5.9e-05	0.115	AGGGCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	66	-	9.41818	5.9e-05	0.115	AGGGCGGAAGTG
ELF1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	69	-	9.41818	5.9e-05	0.115	AGGGCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	90	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	90	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	90	-	9.41818	5.9e-05	0.115	AGGGCGGAAGTG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	90	-	9.41818	5.9e-05	0.115	GAAGCGGAAGCG
ELF1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	90	-	9.41818	5.9e-05	0.115	CAACAGGAAGTC
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	1	10	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	1	10	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	13	22	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	13	22	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	51	60	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	51	60	-	12.5306	5.9e-05	0.422	CCCACCTGGC
TCF4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	60	69	+	12.5306	5.9e-05	0.422	CCCACCTGGC
ZIC1	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	5	18	+	6.76596	5.9e-05	0.0995	CACCGCCTGCTGAC
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	97	110	-	6.76596	5.9e-05	0.0995	CACCGCCTGCTGAC
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	97	110	-	6.76596	5.9e-05	0.0995	CACCGCCTGCTGAC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	11	24	-	6.05102	5.9e-05	0.0723	GGGGCGAGGAGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	68	81	-	6.05102	5.9e-05	0.0723	GAGGCTCACGTGTG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	2	15	+	6.05102	5.9e-05	0.0723	GAGGCTCACGTGTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	34	47	+	6.05102	5.9e-05	0.0723	GAGGCTCACGTGTG
KLF14	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	33	46	-	9.15517	5.9e-05	0.0337	GGCCACCCCCCATA
KLF14	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	69	82	+	9.15517	5.9e-05	0.0337	GGCCACCCCCCATA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	24	34	+	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	24	34	+	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	24	34	+	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	24	34	+	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	27	-	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	64	74	+	11.5273	5.9e-05	0.0551	CCCCGCAGGCC
GLIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	31	44	-	4.27273	5.9e-05	0.379	GCCCCCCCACCCCG
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	94	107	-	9.01515	5.9e-05	0.391	TAGTCCAAAGGCCA
CTCF	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	8	26	+	9.01639	5.9e-05	0.119	CGGGCGGGAGGGGGAGGAG
CTCF	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	89	107	-	9.01639	5.9e-05	0.119	CGGGCGGGAGGGGGAGGAG
REST	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	93	113	-	5.5	5.9e-05	0.219	GACAGCAGCCATGACAGTTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	18	32	+	10.7069	5.9e-05	0.0135	CTCCCTCCCTCTGGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	18	32	+	10.7069	5.9e-05	0.0135	CTCCCTCCCTCTGGA
SP2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	53	67	+	10.7069	5.9e-05	0.0135	GGCCCACCCTGCCCT
SP2	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	79	93	+	10.7069	5.9e-05	0.0135	TCCCCTCCCAGGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	14	28	-	10.7069	5.9e-05	0.0135	GCTCCTCCCACGTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	14	28	-	10.7069	5.9e-05	0.0135	GCTCCTCCCACGTCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	15	29	-	10.7069	5.9e-05	0.0135	GCACCGCCCCGGAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	15	29	-	10.7069	5.9e-05	0.0135	GCACCGCCCCGGAGC
SP2	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	22	36	-	10.7069	5.9e-05	0.0135	TCCCCTCCCAGGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	44	58	-	10.7069	5.9e-05	0.0135	GCCCCACCCAGGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	44	58	-	10.7069	5.9e-05	0.0135	GCCCCACCCAGGCTC
SP2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	49	63	-	10.7069	5.9e-05	0.0135	GGCCCACCCTGCCCT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	53	67	-	10.7069	5.9e-05	0.0135	GCTCCTCCCACGTCT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	53	67	-	10.7069	5.9e-05	0.0135	GCTCCTCCCACGTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	87	101	-	10.7069	5.9e-05	0.0135	GGTCCTCCCTCTTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	87	101	-	10.7069	5.9e-05	0.0135	GGTCCTCCCTCTTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	87	101	-	10.7069	5.9e-05	0.0135	GGTCCTCCCTCTTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	87	101	-	10.7069	5.9e-05	0.0135	GGTCCTCCCTCTTGC
SRY	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	83	91	-	11.0111	5.9e-05	1	TAAAACAAT
SRY	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	1	9	+	11.0111	5.9e-05	1	TAAAACAAT
SRY	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	24	32	+	11.0111	5.9e-05	1	TAAAACAAT
SRY	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	97	105	+	11.0111	5.9e-05	1	TAAAACAAT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	27	-	11.5636	5.9e-05	0.0624	AAACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	28	38	-	11.5636	5.9e-05	0.0624	CAGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	28	38	-	11.5636	5.9e-05	0.0624	CAGCTTCCTGC
ELK4	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	54	-	11.5636	5.9e-05	0.0624	AAACTTCCGGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	45	55	-	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	51	61	-	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	51	61	-	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	59	69	-	11.5636	5.9e-05	0.0624	CAGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	101	111	-	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	101	111	-	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	45	55	+	11.5636	5.9e-05	0.0624	CAGCTTCCTGC
ELK4	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	46	56	+	11.5636	5.9e-05	0.0624	CAGCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	50	60	+	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	50	60	+	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	61	71	+	11.5636	5.9e-05	0.0624	AAACTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	71	81	+	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	71	81	+	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	104	114	+	11.5636	5.9e-05	0.0624	CCTCTTCCTGC
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	88	103	+	-8.59615	5.9e-05	0.329	TGACGGGCCGCGACGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	88	103	+	-8.59615	5.9e-05	0.329	TGACGGGCCGCGACGC
SP8	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	6	17	+	11.0526	5.9e-05	0.0311	TCCCCACCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	23	34	-	11.0526	5.9e-05	0.0311	TCCCCACCCCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	23	34	-	11.0526	5.9e-05	0.0311	TCCCCACCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	26	37	-	11.0526	5.9e-05	0.0311	AACACACCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	26	37	-	11.0526	5.9e-05	0.0311	AACACACCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	26	37	-	11.0526	5.9e-05	0.0311	AACACACCCCTC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	47	58	-	11.0526	5.9e-05	0.0311	CACCCACCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	65	76	+	11.0526	5.9e-05	0.0311	CACCCACCCCCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	65	76	+	11.0526	5.9e-05	0.0311	CACCCACCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	69	80	-	11.0526	5.9e-05	0.0311	CACCCACCCCCC
RXRA::VDR	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	19	33	-	6.37615	5.9e-05	1	GGTTCGCCCAGTTCC
RXRA::VDR	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	96	110	-	6.37615	5.9e-05	1	GGTTCGCCCAGTTCC
RXRA::VDR	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	5	19	+	6.37615	5.9e-05	1	GGTTCGCCCAGTTCC
RXRA::VDR	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	82	96	+	6.37615	5.9e-05	1	GGTTCGCCCAGTTCC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	70	79	-	11.3333	5.9e-05	0.176	GGAGGGTGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	82	91	-	11.3333	5.9e-05	0.176	GGAGGGTGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	82	91	-	11.3333	5.9e-05	0.176	GGAGGGTGAA
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	33	43	-	11.4423	5.9e-05	0.0744	GGCCTCCGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	84	94	-	11.4423	5.9e-05	0.0744	GGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	12	22	+	11.4423	5.9e-05	0.0744	GGCCTCCGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	21	31	+	11.4423	5.9e-05	0.0744	GGCCTCCGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	72	82	+	11.4423	5.9e-05	0.0744	GGCCTCCGGCG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	10	19	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	10	19	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	10	19	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	10	19	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	13	22	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	26	35	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	84	93	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	84	93	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	100	109	+	11.2653	5.9e-05	0.133	CTCACATGAC
TFE3	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	93	102	-	11.2653	5.9e-05	0.133	CTCACATGAC
HEY1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	11.6545	5.9e-05	0.158	GTCACGTGTC
HEY1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	11.6545	5.9e-05	0.158	GTCACGTGTC
HEY1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	11.6545	5.9e-05	0.158	GTCACGTGTC
HEY1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	11.6545	5.9e-05	0.158	GTCACGTGTC
HEY1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	11.6545	5.9e-05	0.158	GTCACGTGTC
HEY1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	11.6545	5.9e-05	0.158	GTCACGTGTC
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	20	34	+	11	5.9e-05	0.335	AAGGTGCAGAGGGCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	20	34	+	11	5.9e-05	0.335	AAGGTGCAGAGGGCG
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	20	34	+	11	5.9e-05	0.335	AAGGTGCAGAGGGCG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.6923	5.91e-05	0.137	GCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.6923	5.91e-05	0.137	GCCGGAAGCC
FLI1	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	18	27	+	11.3617	5.91e-05	0.12	GCCGGATGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	83	92	+	11.3617	5.91e-05	0.12	GCCGGATGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	11.3617	5.91e-05	0.12	TCCGGAAGCA
FLI1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	32	-	11.3617	5.91e-05	0.12	GCCGGATGTG
FLI1	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	97	-	11.3617	5.91e-05	0.12	GCCGGATGTG
SNAI2	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	1	9	-	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	29	37	+	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	29	37	+	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	23	31	-	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	23	31	-	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	31	39	-	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	78	86	-	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	106	114	+	11.7442	5.91e-05	0.472	TGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	106	114	+	11.7442	5.91e-05	0.472	TGCAGGTGG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	20	33	-	11.1061	5.91e-05	0.0583	GTCCCCAGGGCCTC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	37	50	+	11.1061	5.91e-05	0.0583	GTCCCCAGGGCCTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	35	48	-	11.1061	5.91e-05	0.0583	GCGCGCAGGGCCTA
SOX9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	1	9	+	11.1341	5.91e-05	1	CCATTGTCC
SOX9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	1	9	+	11.1341	5.91e-05	1	CCATTGTCC
SOX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	78	86	+	11.1341	5.91e-05	1	CCATTGTCC
SOX9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	78	86	+	11.1341	5.91e-05	1	CCATTGTCC
SOX9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	78	86	+	11.1341	5.91e-05	1	CCATTGTCC
MAFK	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	95	109	+	11.3778	5.91e-05	1	CTTTCTCAGCACTGT
CREB3L1	FLIPPED__mrna.flip.antisense__chr9:77643296..77643410,+__2469.1.0.0	23	36	+	8.92424	5.91e-05	0.303	CCGCCAGGTCTTCA
CREB3L1	WILDTYPE__mrna.flip.sense__chr9:77643296..77643410,-__1124.1.0.0	79	92	-	8.92424	5.91e-05	0.303	CCGCCAGGTCTTCA
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	94	108	-	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	1	15	+	10.5758	5.91e-05	0.108	TTGTCGCGGGGCCGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	1	15	+	10.5758	5.91e-05	0.108	TTGTCGCGGGGCCGC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	1	15	+	10.5758	5.91e-05	0.108	TTGTCGCGGGGCCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	1	15	+	10.5758	5.91e-05	0.108	TTGTCGCGGGGCCGC
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	7	21	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	10	24	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	10	24	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	11	25	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	11	25	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	11	25	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	11	25	+	10.5758	5.91e-05	0.108	TTCTCGTGATAGTGA
NEUROG2	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	68	77	-	10.0606	5.91e-05	1	GCCAGATGCC
ZNF143	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	33	48	+	2.01724	5.91e-05	0.349	CTCCCAGCAGGCTCCG
ZNF143	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	67	82	-	2.01724	5.91e-05	0.349	CTCCCAGCAGGCTCCG
ZNF143	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	67	82	-	2.01724	5.91e-05	0.349	CTCCCAGCAGGCTCCG
ZNF143	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	67	82	-	2.01724	5.91e-05	0.349	CTCCCAGCAGGCTCCG
ETV4	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	11.5345	5.91e-05	0.126	ACCGGAAACT
ETV4	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	11.5345	5.91e-05	0.126	ACCGGAAACT
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	51	64	+	1.43939	5.91e-05	0.198	GCGTGACGTCAGGA
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	51	64	+	1.43939	5.91e-05	0.198	GCGTGACGTCAGGA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	16	29	-	1.43939	5.91e-05	0.198	CCATGACATCAGAA
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	16	29	-	1.43939	5.91e-05	0.198	CCATGACATCAGAA
BATF3	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	51	64	-	1.43939	5.91e-05	0.198	GCGTGACGTCAGGA
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	13	29	+	4.30909	5.91e-05	0.0287	CCCGACACGCCTCCAGT
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	31	47	-	4.30909	5.91e-05	0.0287	GAGCCCCCTCCCACCCC
SP4	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	36	52	-	4.30909	5.91e-05	0.0287	GGGGCTCCTCCCCCTGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	68	84	+	4.30909	5.91e-05	0.0287	GAGGCTCCGGCCACACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	68	84	+	4.30909	5.91e-05	0.0287	GAGGCTCCGGCCACACG
KLF5	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	63	72	+	11.449	5.91e-05	0.0223	ACCACACCCA
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	48	65	-	6.91837	5.91e-05	0.979	AACTTGCCATTACCTGCC
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	48	65	-	6.91837	5.91e-05	0.979	AACTTGCCATTACCTGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	42	56	-	6.81034	5.91e-05	0.0397	ACACACCCACTCGCC
STAT3	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	26	36	-	11.2857	5.91e-05	0.3	CTCCTGGGAAG
STAT3	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	66	76	+	11.2857	5.91e-05	0.3	TATCTGGGAAA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	66	79	+	3.4	5.91e-05	0.202	GAGAAGCGGATGTT
SPI1	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	12	25	-	3.4	5.91e-05	0.202	GAGAAGCGGATGTT
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	100	-	9.45902	5.91e-05	0.105	ACGCCGGAAGGG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	100	-	9.45902	5.91e-05	0.105	ACGCCGGAAGGG
JUNB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	12	22	+	11.5306	5.91e-05	0.209	GGGTGACTAAC
JUNB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	12	22	+	11.5306	5.91e-05	0.209	GGGTGACTAAC
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	60	71	+	11.56	5.91e-05	1	TATTTGCATAGC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	12	24	+	11.0492	5.91e-05	0.359	CTGTCTATCTCTC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	71	83	+	11.0492	5.91e-05	0.359	GGGTCTATCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	71	83	+	11.0492	5.91e-05	0.359	GGGTCTATCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	87	99	+	11.0492	5.91e-05	0.359	TTGCCTGCCACCA
SOX8	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	37	52	+	-12.0152	5.92e-05	1	AACAATAGACAATGTG
SP3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	27	37	+	11.2114	5.92e-05	0.022	CACCCTCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	90	100	+	11.2114	5.92e-05	0.022	CTCACTCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	6	16	-	11.2114	5.92e-05	0.022	CCCGCACCCCC
SP3	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	15	25	-	11.2114	5.92e-05	0.022	CTCACTCCCCC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	1	10	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	1	10	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	26	35	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	30	39	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	37	46	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	74	83	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	74	83	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	74	83	+	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	78	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	79	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	79	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	79	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	79	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	89	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	89	-	11.5577	5.92e-05	0.102	GCCGGAAGTC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	36	47	-	11.4727	5.92e-05	0.0569	CCCCTTCGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	57	68	+	11.4727	5.92e-05	0.0569	TGCCGGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	57	68	+	11.4727	5.92e-05	0.0569	TGCCGGGGGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	68	79	+	11.4727	5.92e-05	0.0569	CCCCTTCGGGCC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	53	65	+	10.6066	5.92e-05	0.0586	TGCCGCGCAGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	+	10.6066	5.92e-05	0.0586	TCCCTCTCGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	-	10.6066	5.92e-05	0.0586	TCCCTCTCGGGGA
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	50	62	-	10.6066	5.92e-05	0.0586	TGCCGCGCAGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	+	10.2586	5.92e-05	0.0554	AGCCTAAAGGGCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	+	10.2586	5.92e-05	0.0554	CCCCCCGCAGGGA
RFX4	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	+	10.197	5.92e-05	0.292	GGTTACCATGGTCGCG
RFX4	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	-	10.197	5.92e-05	0.292	GGTTGCCCGGGCAATG
RFX4	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	+	10.197	5.92e-05	0.292	GGTTGCCCGGGCAATG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	-	10.197	5.92e-05	0.292	CATTGTCACGGTGACC
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	70	79	+	11.129	5.92e-05	1	ACTTTCCATT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	57	70	+	11.5	5.92e-05	0.223	GTACTGTGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	84	97	-	11.5	5.92e-05	0.223	GTACTGTGACTCAG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	84	97	-	11.5	5.92e-05	0.223	AATTTCTGACTCAT
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	-	11.72	5.92e-05	0.821	ATTACGTAAC
EGR1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	39	52	-	10.5577	5.92e-05	0.0233	TGGCCGCCGCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	46	59	-	10.5577	5.92e-05	0.0233	GTCACACCCACACG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	46	59	-	10.5577	5.92e-05	0.0233	GTCACACCCACACG
EGR1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	52	65	-	10.5577	5.92e-05	0.0233	GGCCCGCCGCCTTC
EGR1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	61	74	-	10.5577	5.92e-05	0.0233	GGCCCGCCGCCTTC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	79	92	-	10.5577	5.92e-05	0.0233	CCGCTTCCGCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	82	95	-	10.5577	5.92e-05	0.0233	TCTCTGCCTCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	12	25	+	10.5577	5.92e-05	0.0233	GTCACACCCACACG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	12	25	+	10.5577	5.92e-05	0.0233	GTCACACCCACACG
EGR1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	23	36	+	10.5577	5.92e-05	0.0233	CCGCTTCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	41	54	+	10.5577	5.92e-05	0.0233	GGCCCGCCGCCTTC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	59	72	+	10.5577	5.92e-05	0.0233	AGACCTCCCACTCC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	36	56	-	9.89796	5.92e-05	0.0185	AAGGGTGTGTGGAGGGGGAGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	46	66	-	9.89796	5.92e-05	0.0185	TAAAGAGGAAGGGGTGGAGCT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	55	75	-	9.89796	5.92e-05	0.0185	GGGGGCAAGAGGAGCGAGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	78	98	-	9.89796	5.92e-05	0.0185	TGAGCTGGGAGGCAGAGGAGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	85	105	-	9.89796	5.92e-05	0.0185	GGAGGGGGCCTGGCGGGAAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	10	30	+	9.89796	5.92e-05	0.0185	GGAGGGGGCCTGGCGGGAAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	17	37	+	9.89796	5.92e-05	0.0185	TGAGCTGGGAGGCAGAGGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	22	42	+	9.89796	5.92e-05	0.0185	AGGGAGGGGGAGAGAGGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	39	59	+	9.89796	5.92e-05	0.0185	GGGGGCAAGAGGAGCGAGGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	49	69	+	9.89796	5.92e-05	0.0185	TAAAGAGGAAGGGGTGGAGCT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	59	79	+	9.89796	5.92e-05	0.0185	AAGGGTGTGTGGAGGGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	89	109	+	9.89796	5.92e-05	0.0185	GATGGCGGCGGAGCTGGTGGA
SP1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	66	76	+	11.2308	5.92e-05	0.0155	CCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	76	86	+	11.2308	5.92e-05	0.0155	CCCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	76	86	+	11.2308	5.92e-05	0.0155	CCCCCTCCCAG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	36	49	+	8.54098	5.92e-05	0.185	CCCCCCCCGCACGC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	19	33	-	11.045	5.92e-05	0.182	GGGGGGAAAAGGCCC
CEBPA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	39	49	-	11.7347	5.92e-05	0.79	GTTGCATAATG
CEBPA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	39	49	-	11.7347	5.92e-05	0.79	GTTGCATAATG
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	19	30	-	11.2459	5.92e-05	0.419	TTGGGCGCGACA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	19	30	-	11.2459	5.92e-05	0.419	TTGGGCGCGACA
E2F1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	41	52	-	11.2459	5.92e-05	0.419	TGGGGCGCGAAA
E2F1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	63	74	+	11.2459	5.92e-05	0.419	TGGGGCGCGAAA
NR2C2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	37	51	+	9.68571	5.92e-05	0.122	GGAGGGAGGAGGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	64	78	-	9.68571	5.92e-05	0.122	GGAGGGAGGAGGGCG
KLF13	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	1	18	-	5.10345	5.92e-05	0.292	TTGTCACGCCCTTCGAGC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	35	44	+	11.069	5.92e-05	0.131	ACCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	35	44	+	11.069	5.92e-05	0.131	ACCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	57	66	+	11.069	5.92e-05	0.131	ACCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	57	66	+	11.069	5.92e-05	0.131	ACCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	86	95	+	11.069	5.92e-05	0.131	ACCAGCTGCC
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	86	95	+	11.069	5.92e-05	0.131	ACCAGCTGCC
ELF5	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	14	24	+	11.4909	5.93e-05	0.139	AGGCGGAAATG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	46	56	-	11.4909	5.93e-05	0.139	TCCAGGAAGCG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	46	56	-	11.4909	5.93e-05	0.139	TCCAGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	46	56	-	11.4909	5.93e-05	0.139	TCCAGGAAGCG
ELF5	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	59	69	+	11.4909	5.93e-05	0.139	TCCAGGAAGCG
Rxra	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	50	63	+	3.4878	5.93e-05	0.484	GGGGTCAGAAGGCA
SP3	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	37	+	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	55	65	+	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	82	92	+	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	88	98	+	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	18	28	-	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	18	28	-	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	18	28	-	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	22	32	-	11.2033	5.93e-05	0.022	CCTCCGCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	37	47	-	11.2033	5.93e-05	0.022	CCTCCGCCCCC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.1.0	79	91	-	12.0612	5.93e-05	0.173	TTCAGCTGTGTCC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.0.0	79	91	-	12.0612	5.93e-05	0.173	TTCAGCTGTGTCC
NR4A2	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	17	24	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	64	71	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	74	81	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	85	92	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	85	92	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	85	92	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	85	92	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	85	92	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	107	114	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	107	114	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	107	114	+	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	107	114	+	11.4545	5.93e-05	0.706	AAGGTCAG
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	10	17	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	10	17	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	10	17	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	10	17	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	18	25	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	20	27	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	21	28	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	21	28	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	27	34	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	30	37	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	30	37	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	30	37	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	30	37	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	36	43	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	43	50	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	57	64	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	77	84	+	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	82	89	+	11.4775	5.93e-05	0.174	TGACGTAA
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	20	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	20	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	54	61	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	63	70	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	78	85	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	83	90	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	102	109	-	11.2241	5.93e-05	0.762	GGGTGTGA
TBX4	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	42	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	74	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	88	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	103	110	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	113	-	11.3265	5.93e-05	0.811	AGGTGCGA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	44	51	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	97	104	-	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	97	104	-	11.4918	5.93e-05	0.377	ATGACGCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	7	14	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	7	14	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	7	14	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	7	14	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	7	14	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	26	33	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	26	33	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	31	38	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	54	61	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	64	71	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	64	71	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	65	72	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	72	79	-	11.4775	5.93e-05	0.174	TGACGTAA
CREB1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	88	95	-	11.4775	5.93e-05	0.174	TGACGTAA
TBX5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	6	13	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	6	13	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	36	43	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	51	58	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	51	58	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	54	61	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	98	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	98	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX5	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	99	106	+	11.2241	5.93e-05	0.762	GGGTGTGA
TBX4	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	12	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	34	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	34	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	34	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	34	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	34	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	41	48	+	11.3265	5.93e-05	0.811	AGGTGCGA
TBX4	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	73	80	+	11.3265	5.93e-05	0.811	AGGTGCGA
NR4A2	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	2	9	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	23	30	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	34	41	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	44	51	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	48	55	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	67	74	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	71	78	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	71	78	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	81	88	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	81	88	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	81	88	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	81	88	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	91	98	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	106	113	-	11.4545	5.93e-05	0.706	AAGGTCAG
NR4A2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	106	113	-	11.4545	5.93e-05	0.706	AAGGTCAG
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	50	57	+	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	50	57	+	11.4918	5.93e-05	0.377	ATGACGCA
Atf1	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	64	71	+	11.4918	5.93e-05	0.377	ATGACGCA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	23	32	-	11.0612	5.93e-05	0.0223	AGGGTGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	23	32	-	11.0612	5.93e-05	0.0223	AGGGTGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	32	41	-	11.0612	5.93e-05	0.0223	AGGGTGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	74	83	+	11.0612	5.93e-05	0.0223	AGGGTGGGAC
Klf4	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	81	90	-	11.0612	5.93e-05	0.0223	AGGGTGGGAC
PROX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	45	56	-	9.09091	5.93e-05	1	GAAGACGCCGCG
PROX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	45	56	-	9.09091	5.93e-05	1	GAAGACGCCGCG
PROX1	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	59	70	+	9.09091	5.93e-05	1	GAAGACGCCGCG
PROX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	62	73	-	9.09091	5.93e-05	1	GAAGACGCCGCG
PROX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	62	73	-	9.09091	5.93e-05	1	GAAGACGCCGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	+	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	+	11.3636	5.93e-05	0.0702	CGCCTTCGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	-	11.3636	5.93e-05	0.0702	CGCCTTCGGCT
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	-	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	-	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	-	11.3636	5.93e-05	0.0702	GGCCTGCGGCG
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	28	38	+	11.7455	5.93e-05	0.721	AAGCTCTCATG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	14	29	+	10.5091	5.93e-05	0.0393	CTCCGCCCTTGCGCAT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	14	29	+	10.5091	5.93e-05	0.0393	CTCCGCCCTTGCGCAT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	8	23	-	10.5091	5.93e-05	0.0393	GACCGCCCACTCGCCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	8	23	-	10.5091	5.93e-05	0.0393	GACCGCCCACTCGCCA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	8	23	-	10.5091	5.93e-05	0.0393	GACCGCCCACTCGCCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	8	23	-	10.5091	5.93e-05	0.0393	GACCGCCCACTCGCCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	8	23	-	10.5091	5.93e-05	0.0393	GACCGCCCACTCGCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	47	62	+	10.5091	5.93e-05	0.0393	CCCCGCCCCCGGCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	47	62	+	10.5091	5.93e-05	0.0393	CCCCGCCCCCGGCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	73	+	10.5091	5.93e-05	0.0393	CCCCCCCCCCGCCGCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	65	80	-	10.5091	5.93e-05	0.0393	TGCCGCGCACGCGCAG
ESR1	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	10	26	-	0.318182	5.93e-05	0.514	GACGTCAGCATGACACC
ESR1	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	36	52	+	0.318182	5.93e-05	0.514	GACGTCAGCATGACACC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	11.6212	5.93e-05	0.585	GCCACGTGCT
CLOCK	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	11.6212	5.93e-05	0.585	GCCACGTGCT
CLOCK	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	11.6212	5.93e-05	0.585	GCCACGTGCT
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	11.6212	5.93e-05	0.585	GCCACGTGCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	10	22	-	2.69388	5.93e-05	0.253	AGGGCCTTCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	10	22	-	2.69388	5.93e-05	0.253	AGGGCCTTCCCCG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	67	79	-	2.69388	5.93e-05	0.253	AGGGCCTTCCCCG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	36	48	+	2.69388	5.93e-05	0.253	AGGGCCTTCCCCG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	93	105	+	2.69388	5.93e-05	0.253	AGGGCCTTCCCCG
OLIG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	11.4138	5.93e-05	1	AGCATATGCC
OLIG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	11.4138	5.93e-05	1	AGCATATGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	11.4483	5.93e-05	0.112	GCCGGAAGGG
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	11.5862	5.93e-05	1	AGCATATGTC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	37	51	+	8.47143	5.93e-05	0.112	GCATCCCCGCAGTGA
E2F2	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	96	111	-	1.62195	5.93e-05	1	AAAAATGCGCGTTTCC
GCM1	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	50	60	+	11.0816	5.93e-05	0.531	GGTGCGGGCGG
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	15	26	-	11.1429	5.93e-05	0.217	AGCGACGACCAA
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	15	26	-	11.1429	5.93e-05	0.217	GGGGACGACCGA
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	53	64	-	11.1429	5.93e-05	0.217	CCGGCCCACCGA
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	68	79	-	11.1429	5.93e-05	0.217	GCGGCCCACCGG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	91	102	-	11.1429	5.93e-05	0.217	TCCGACCACAAC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	13	24	+	11.1429	5.93e-05	0.217	TCCGACCACAAC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	89	100	+	11.1429	5.93e-05	0.217	GGGGACGACCGA
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	89	100	+	11.1429	5.93e-05	0.217	GGGGACGACCGA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	89	100	+	11.1429	5.93e-05	0.217	GGGGACGACCGA
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	7	20	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	7	20	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	11	24	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	12	25	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	12	25	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	3	16	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	3	16	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	17	30	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	17	30	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	21	34	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	8	21	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	8	21	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	9	22	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	22	35	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	22	35	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	11	24	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	13	26	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	13	26	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	14	27	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	27	40	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	27	40	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	27	40	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	29	42	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	29	42	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	29	42	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	29	42	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	29	42	+	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	16	29	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	18	31	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	18	31	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	19	32	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	33	46	+	9.13793	5.93e-05	0.0337	TGCGCCGCCCACCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	21	34	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	23	36	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	23	36	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	25	38	-	9.13793	5.93e-05	0.0337	GGCTCCGCCCCACC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	25	38	-	9.13793	5.93e-05	0.0337	GGCTCCGCCCCACC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	25	38	-	9.13793	5.93e-05	0.0337	GGCTCCGCCCCACC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	25	38	-	9.13793	5.93e-05	0.0337	GGCTCCGCCCCACC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	30	43	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	30	43	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	30	43	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	30	43	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	35	48	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	35	48	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	35	48	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	35	48	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	40	53	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	40	53	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	40	53	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	40	53	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	69	82	-	9.13793	5.93e-05	0.0337	TGCGCCGCCCACCC
KLF14	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	73	86	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
KLF14	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	75	88	-	9.13793	5.93e-05	0.0337	CGCCCCGCCCCGCC
TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	22	31	+	12.5192	5.94e-05	0.404	CCCACCTGCA
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	22	31	+	12.5192	5.94e-05	0.404	CCCACCTGCA
Spz1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	2	12	+	11.4182	5.94e-05	0.77	AGGGGTACAGG
Spz1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	7	17	+	11.4182	5.94e-05	0.77	AGGGGTACAGG
Spz1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	98	108	-	11.4182	5.94e-05	0.77	AGGGGTACAGG
Spz1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	103	113	-	11.4182	5.94e-05	0.77	AGGGGTACAGG
HINFP	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	20	31	-	10.9697	5.94e-05	0.109	CAGCCTCCGCCC
HINFP	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	20	31	-	10.9697	5.94e-05	0.109	CAGCCTCCGCCC
HINFP	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	20	31	-	10.9697	5.94e-05	0.109	CAGCCTCCGCCC
HINFP	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	85	96	+	10.9697	5.94e-05	0.109	CAGCCTCCGCCC
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	+	10.8727	5.94e-05	1	TGTTACGTCACG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.6034	5.94e-05	0.107	ACAGGAAGTT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	1	13	+	8.63636	5.94e-05	0.264	TGGGAGAGTCCCT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	81	95	+	8.65574	5.94e-05	0.0641	GGCAACACCCAAAGC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	38	56	-	9	5.94e-05	0.12	CCGCCTCCGGGCGTCGCCA
SP4	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	30	46	-	4.29091	5.94e-05	0.0288	GCCTCCCCGCCCCCCGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	48	64	+	4.29091	5.94e-05	0.0288	ATCGCCCCTCCTCCTCG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	28	41	+	11.0909	5.94e-05	0.0583	GGGGCCGAGGCCCG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	28	41	+	11.0909	5.94e-05	0.0583	GGGGCCGAGGCCCG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	47	60	-	11.0909	5.94e-05	0.0583	CGCGCCGCGCCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	47	60	-	11.0909	5.94e-05	0.0583	CGCGCCGCGCCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	63	76	+	11.0909	5.94e-05	0.0583	GGGGCCGAGGCCCG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	63	76	+	11.0909	5.94e-05	0.0583	GGGGCCGAGGCCCG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	89	102	-	11.0909	5.94e-05	0.0583	GGGAGTTGGGCCTT
ELK1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	43	52	+	10.5745	5.94e-05	0.0923	GCCGGAAGAG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	63	72	-	10.5745	5.94e-05	0.0923	GCCGGAAGAG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	63	72	-	10.5745	5.94e-05	0.0923	GCCGGAAGAG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	63	72	-	10.5745	5.94e-05	0.0923	GCCGGAAGAG
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	63	72	-	10.5745	5.94e-05	0.0923	GCCGGAAGAG
USF2	WILDTYPE__mrna.flip.sense__chrX:100663169..100663283,+__1126.1.0.0	12	22	-	11.551	5.94e-05	0.143	GTCATGTGAGA
USF2	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	25	35	-	11.551	5.94e-05	0.143	GTCATGTGAGA
USF2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	70	80	-	11.551	5.94e-05	0.143	GCCATGTGGGC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	83	93	-	11.551	5.94e-05	0.143	GTCATGTGAGA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	83	93	-	11.551	5.94e-05	0.143	GTCATGTGAGA
USF2	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	86	96	-	11.551	5.94e-05	0.143	GCCATGTGGGC
USF2	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	19	29	+	11.551	5.94e-05	0.143	GCCATGTGGGC
USF2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	35	45	+	11.551	5.94e-05	0.143	GCCATGTGGGC
USF2	FLIPPED__mrna.flip.antisense__chrX:100663169..100663283,-__2764.1.0.0	93	103	+	11.551	5.94e-05	0.143	GTCATGTGAGA
HEY1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	+	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	-	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	-	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	-	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	-	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	-	11.6364	5.95e-05	0.158	GGCACGCGCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	-	11.6364	5.95e-05	0.158	GGCACGCGCG
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	44	54	-	8.82759	5.95e-05	1	TCAAGGTCGGC
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	44	54	-	8.82759	5.95e-05	1	TCAAGGTCGGC
EGR3	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	27	41	+	6.7931	5.95e-05	0.0398	ACCCACCCACCCGAT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	32	46	-	6.7931	5.95e-05	0.0398	CCCCACCTCCGCTTC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	32	46	-	6.7931	5.95e-05	0.0398	CCCCACCTCCGCTTC
GLI2	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	9	20	+	10.6379	5.95e-05	0.33	AAGACCACGCAA
ETV1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.4909	5.95e-05	0.117	CCCGGAAGTT
ETV1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
ETV1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	11.4909	5.95e-05	0.117	ACAGGAAGTG
JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	80	92	+	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	80	92	+	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	80	92	+	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	80	92	+	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	32	44	-	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	32	44	-	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	32	44	-	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	32	44	-	10.7347	5.95e-05	0.303	GTGCTGATGCAAT
Myog	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	40	+	12.0816	5.95e-05	0.154	AGCAGGTGGTG
Myog	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	71	81	-	12.0816	5.95e-05	0.154	AGCAGGTGGTG
Myog	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	94	104	+	12.0816	5.95e-05	0.154	CGCAGCTGAAG
MAX::MYC	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	24	-	10.7347	5.95e-05	0.318	TGTCACGTGGC
INSM1	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	34	45	-	10.2653	5.95e-05	0.177	AGGTTGGGGGCG
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	20	31	-	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ELF1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	68	79	+	9.4	5.95e-05	0.115	GGGCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	84	95	+	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	84	95	+	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	84	95	+	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	84	95	+	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	84	95	+	9.4	5.95e-05	0.115	GAGCAGGAAGTC
ZBTB18	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	89	101	+	10.0143	5.95e-05	0.729	CTCCCAGGTGTGG
ZBTB18	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	14	26	-	10.0143	5.95e-05	0.729	CTCCCAGGTGTGG
GATA2	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	28	41	+	11.8364	5.95e-05	1	CTTTTCTTATCTTC
NR2F1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	37	49	+	11.551	5.95e-05	0.434	CAGGGGTCAGGCC
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	72	84	+	11.551	5.95e-05	0.434	CCAAGGTCACACA
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	66	78	-	11.551	5.95e-05	0.434	CAGGGGTCAGGCC
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	66	78	-	11.551	5.95e-05	0.434	CAGGGGTCAGGCC
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	66	78	-	11.551	5.95e-05	0.434	CAGGGGTCAGGCC
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	66	78	-	11.551	5.95e-05	0.434	CAGGGGTCAGGCC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	56	70	+	10.9362	5.95e-05	0.32	GGAAATGACCTCAGC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	45	59	-	10.9362	5.95e-05	0.32	GGAAATGACCTCAGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	26	40	+	10.6897	5.95e-05	0.0136	CTTCCTCCCTCCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	35	49	+	10.6897	5.95e-05	0.0136	GGCCCTCCCACAAGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	36	50	+	10.6897	5.95e-05	0.0136	CTCCTGCCCTCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	36	50	+	10.6897	5.95e-05	0.0136	CTCCTGCCCTCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	42	56	+	10.6897	5.95e-05	0.0136	CTTCCTCCCTCCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	84	98	+	10.6897	5.95e-05	0.0136	ACTCCTCCTCCGCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	29	43	-	10.6897	5.95e-05	0.0136	TCACCGCCCCTCTAC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	29	43	-	10.6897	5.95e-05	0.0136	TCACCGCCCCTCTAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	29	43	-	10.6897	5.95e-05	0.0136	TCACCGCCCCTCTAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	29	43	-	10.6897	5.95e-05	0.0136	TCACCGCCCCTCTAC
ESR1	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	76	92	+	0.30303	5.95e-05	0.514	TGGGGCAGTGTGAGATG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	76	90	-	10.5606	5.95e-05	0.108	GCCTCGCGAGGTAGG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	25	39	+	10.5606	5.95e-05	0.108	GCCTCGCGAGGTAGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	41	58	-	-13	5.95e-05	0.0512	GGAAGGAGGCCGGCGAAG
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	-	11.1207	5.95e-05	0.199	GGCGCGTGCT
HEY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	-	11.1207	5.95e-05	0.199	GGCGCGTGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	+	10.2414	5.95e-05	0.0554	AGCCTTGTGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	+	10.2414	5.95e-05	0.0554	AGCCTTGTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	-	10.2414	5.95e-05	0.0554	AGCCTTGTGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	-	10.2414	5.95e-05	0.0554	AGCCTTGTGGGCG
PROX1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	10	21	-	9.07273	5.95e-05	1	CATGACGCCGCA
PROX1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	33	44	-	9.07273	5.95e-05	1	CATGACGCCGCA
PROX1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	71	82	+	9.07273	5.95e-05	1	CATGACGCCGCA
PROX1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	94	105	+	9.07273	5.95e-05	1	CATGACGCCGCA
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	60	69	+	11.3662	5.95e-05	0.143	ACCTGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	60	69	+	11.3662	5.95e-05	0.143	ACCTGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	101	110	+	11.3662	5.95e-05	0.143	ACCTGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	101	110	+	11.3662	5.95e-05	0.143	ACCTGAAGTC
HLF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	7	18	-	11.7627	5.96e-05	1	AATTATGCAACC
HLF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	7	18	-	11.7627	5.96e-05	1	AATTATGCAACC
HLF	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	+	11.7627	5.96e-05	1	GCTGACGTAACC
HLF	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	-	11.7627	5.96e-05	1	GCTGACGTAACC
HLF	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	+	11.7627	5.96e-05	1	GCTGACGTAACC
HLF	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	-	11.7627	5.96e-05	1	GCTGACGTAACC
LHX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.5556	5.96e-05	1	CCTAATTAGA
Arid3b	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	69	79	+	11.1429	5.96e-05	1	TTATTAATAAC
Arid3b	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	68	78	-	11.1429	5.96e-05	1	TTATTAATAAC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	14	28	-	10.6	5.96e-05	0.109	CCCCACCCGCCGTCT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	19	33	-	10.6	5.96e-05	0.109	GGCCCCCAGCAGGGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	19	33	-	10.6	5.96e-05	0.109	GGCCCCCAGCAGGGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	20	34	-	10.6	5.96e-05	0.109	TCCTACCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	54	68	-	10.6	5.96e-05	0.109	GGCCCCCAGCAGGGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	54	68	-	10.6	5.96e-05	0.109	GGCCCCCAGCAGGGG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	100	113	-	5.90816	5.96e-05	0.365	TGGCCCCGCCCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	2	15	+	5.90816	5.96e-05	0.365	TGGCCCCGCCCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	2	15	+	5.90816	5.96e-05	0.365	TGGCCCCGCCCCAG
HES5	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	100	111	-	3.25862	5.96e-05	0.298	TGGCCCGTGCCC
MAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	-	12.1731	5.96e-05	0.298	TCCACGTGGC
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	-	12.1731	5.96e-05	0.298	TCCACGTGGC
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	73	83	+	11.4394	5.96e-05	0.337	ATTCGCCATAA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	73	83	+	11.4394	5.96e-05	0.337	ATTCGCCATAA
TCF4	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	67	76	-	12.4286	5.96e-05	0.422	GGCACCTGGT
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	24	33	+	12.4286	5.96e-05	0.422	GGCACCTGGT
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	24	33	+	12.4286	5.96e-05	0.422	GGCACCTGGT
Znf423	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	39	53	+	6.30337	5.96e-05	0.303	CGATCCCTAGGTGGA
Tcf12	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	6	16	-	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	18	+	12.0612	5.96e-05	0.182	GGCAGGTGGAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	18	+	12.0612	5.96e-05	0.182	GGCAGGTGGAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	99	109	+	12.0612	5.96e-05	0.182	AGCAGCTGAGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	2	16	+	9.67143	5.96e-05	0.122	CTGGGGGAGAGGGGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	2	16	+	9.67143	5.96e-05	0.122	CTGGGGGAGAGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	2	16	+	9.67143	5.96e-05	0.122	CTGGGGGAGAGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	2	16	+	9.67143	5.96e-05	0.122	CTGGGGGAGAGGGGG
ZNF143	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	95	110	+	1.98276	5.96e-05	0.349	ATCCCAGAAATCATTG
ZNF143	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	5	20	-	1.98276	5.96e-05	0.349	ATCCCAGAAATCATTG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	-	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	-	11.4231	5.96e-05	0.0744	CGCCCGAGGGG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	-	11.4231	5.96e-05	0.0744	CGCCCGAGGGG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	-	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	-	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	+	11.4231	5.96e-05	0.0744	GGCCTGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	64	74	+	11.4231	5.96e-05	0.0744	TCCCCCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	64	74	+	11.4231	5.96e-05	0.0744	TCCCCCAGGCT
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	25	38	-	1.40909	5.96e-05	0.198	CAGTGACATCATTG
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	25	38	-	1.40909	5.96e-05	0.198	CAGTGACATCATTG
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	25	38	-	1.40909	5.96e-05	0.198	CAGTGACATCATTG
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	25	38	-	1.40909	5.96e-05	0.198	CAGTGACATCATTG
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	25	38	-	1.40909	5.96e-05	0.198	CAGTGACATCATTG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	23	32	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	23	32	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	44	53	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	44	53	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	44	53	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	44	53	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	70	79	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	70	79	+	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	43	52	-	10.8624	5.96e-05	0.0553	CACCCCCCAG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	66	75	-	10.8624	5.96e-05	0.0553	ACCCCCCTCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	82	91	-	10.8624	5.96e-05	0.0553	CACCCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	82	91	-	10.8624	5.96e-05	0.0553	CACCCCCCAG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	102	114	-	2.67347	5.96e-05	0.253	CGGGGGAATCCCT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	1	13	+	2.67347	5.96e-05	0.253	CGGGGGAATCCCT
Foxo1	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	80	90	+	11.7586	5.96e-05	0.902	GGTTGTTTTCA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	19	-	10.7541	5.96e-05	0.17	GAGCGGAAGCG
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	19	-	10.7541	5.96e-05	0.17	GAGCGGAAGCG
ETV2	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	96	106	+	10.7541	5.96e-05	0.17	GAGCGGAAGCG
HOXA13	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	50	59	+	11.5278	5.96e-05	1	CCCATAAACC
HOXA13	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	56	65	-	11.5278	5.96e-05	1	CCCATAAACC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	80	99	+	4.12844	5.96e-05	0.0614	ACAGACAACACCCACGTCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	23	35	-	8.62121	5.96e-05	0.264	GGGGGCCGCCCCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	92	104	+	10.5902	5.96e-05	0.0586	TGCCCTGTTGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	92	104	+	10.5902	5.96e-05	0.0586	TGCCCTGTTGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	92	104	+	10.5902	5.96e-05	0.0586	TGCCCTGTTGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	92	104	+	10.5902	5.96e-05	0.0586	TGCCCTGTTGGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	15	25	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	15	25	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
ELK4	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	48	58	-	11.5455	5.97e-05	0.0626	GCGTTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	54	64	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	54	64	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	54	64	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	54	64	-	11.5455	5.97e-05	0.0626	CCGCTTCCGTC
SOX8	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	37	52	-	-12.0606	5.97e-05	1	CACATTGTCTATTGTT
EHF	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	33	-	10.5246	5.97e-05	0.131	GCCCCGGAAGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	16	+	10.3818	5.97e-05	0.0193	GCGCACGTGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	39	+	10.3818	5.97e-05	0.0193	GCGCACGTGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	86	-	10.3818	5.97e-05	0.0193	GCGCACGTGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.0	93	103	-	10.3818	5.97e-05	0.0193	GAACGTGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:62622910..62623024,-__186.1.1.1	93	103	-	10.3818	5.97e-05	0.0193	GAACGTGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	109	-	10.3818	5.97e-05	0.0193	GCGCACGTGCC
Gfi1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	61	70	-	11.061	5.97e-05	0.548	CAAATCTCTC
Gfi1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	61	70	-	11.061	5.97e-05	0.548	CAAATCTCTC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	27	40	+	11.0704	5.97e-05	0.257	AGCAATAGGAAGTC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	2	12	-	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	2	12	-	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	22	32	-	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	22	32	-	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	42	52	-	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	88	98	-	11.2241	5.97e-05	0.0483	CGGCGCGAACT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	61	71	+	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	63	73	+	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	103	113	+	11.2241	5.97e-05	0.0483	GGGCGGCAGGG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	20	36	+	4.27273	5.97e-05	0.0288	GCAGCCCCTCCCATGGA
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	20	36	+	4.27273	5.97e-05	0.0288	GCAGCCCCTCCCATGGA
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	19	35	-	4.27273	5.97e-05	0.0288	GCAGCCCCTCCCATGGA
SP4	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	35	51	-	4.27273	5.97e-05	0.0288	TTGGCCCCACCCGCTGC
Mitf	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	92	101	-	11.0204	5.97e-05	0.243	TGTCACGCGA
Mitf	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	2	11	+	11.0204	5.97e-05	0.243	TGTCACGCGA
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	39	59	+	9.27419	5.97e-05	0.187	TTTTTCTTTTCTTTTTTTTCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	41	61	+	9.27419	5.97e-05	0.187	ACCTCTTTTCCCTTTCGGATT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	44	64	+	9.27419	5.97e-05	0.187	TGTCCCTTTTTTTTTTTCATT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	46	66	+	9.27419	5.97e-05	0.187	TTCCTTTTTTTTTTTCATTTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	75	95	+	9.27419	5.97e-05	0.187	ACCTCTTTTCCCTTTCGGATT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	88	108	-	9.27419	5.97e-05	0.187	CCCTTCTTTCAGTCTCCGGTG
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	78	87	+	11.8793	5.97e-05	0.659	CCATTGTCCC
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	78	87	+	11.8793	5.97e-05	0.659	CCATTGTCCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	78	87	+	11.8793	5.97e-05	0.659	CCATTGTCCC
Sox6	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	14	23	+	12.1143	5.97e-05	0.773	TCTTTGTTTC
Sox6	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	33	42	+	12.1143	5.97e-05	0.773	TCTTTGTTTC
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	64	80	+	3.62295	5.97e-05	0.563	CGGGCAGGCTGAGCTCA
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	98	114	+	3.62295	5.97e-05	0.563	AGGATCTGTGGAGGTCA
Neurog1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	97	106	+	10.3516	5.97e-05	1	AGCATATGTC
Klf1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	22	32	+	11.1212	5.97e-05	0.0469	AACTCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	30	40	+	11.1212	5.97e-05	0.0469	CCACACACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	30	40	+	11.1212	5.97e-05	0.0469	CCACACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	31	41	+	11.1212	5.97e-05	0.0469	AACTCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	31	41	+	11.1212	5.97e-05	0.0469	AACTCCACCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	88	98	+	11.1212	5.97e-05	0.0469	CCACACACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	74	84	-	11.1212	5.97e-05	0.0469	AACTCCACCCT
ESR1	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	20	36	+	0.287879	5.97e-05	0.514	TGGGTCACAGTGAGGCG
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	81	92	+	9.37097	5.97e-05	1	GCCATAAATAAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	66	76	-	10.7586	5.97e-05	0.021	ACCCCGCCCCA
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	8	21	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	8	21	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	8	21	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	8	21	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	30	43	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	30	43	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	30	43	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	30	43	-	10.3621	5.97e-05	0.273	TAACCCATGGCAAC
KLF5	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	27	36	+	11.3878	5.97e-05	0.0225	GTCACGCCCA
JUN	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	60	72	+	10.7143	5.97e-05	0.303	ATGATGACGTCAA
JUN	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	43	55	-	10.7143	5.97e-05	0.303	ATGATGACGTCAA
E2F8	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	3	14	+	5.39024	5.97e-05	0.631	TTGCCCGCAAAG
E2F8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.0.0	61	72	-	5.39024	5.97e-05	0.631	TTGCCCGCAAAG
E2F8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	61	72	-	5.39024	5.97e-05	0.631	TTGCCCGCAAAG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	8	21	+	9.12069	5.97e-05	0.0337	TTCCCCGCCCCCGC
KLF14	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	13	26	+	9.12069	5.97e-05	0.0337	GCGCCCGCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	21	34	+	9.12069	5.97e-05	0.0337	GCCTACGCCTACTT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	21	34	+	9.12069	5.97e-05	0.0337	GCCTACGCCTACTT
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	18	31	-	9.12069	5.97e-05	0.0337	GACCCCCCCCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	69	82	-	9.12069	5.97e-05	0.0337	TCTCACGCCTCCTC
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	84	97	+	9.12069	5.97e-05	0.0337	GACCCCCCCCCCCG
KLF14	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	89	102	-	9.12069	5.97e-05	0.0337	GCGCCCGCCCCCCC
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	+	11.4182	5.98e-05	0.0893	GGCCCCGGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	53	-	11.4182	5.98e-05	0.0893	TCCCCCGCGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	53	-	11.4182	5.98e-05	0.0893	TCCCCCGCGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	53	-	11.4182	5.98e-05	0.0893	TCCCCCGCGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	53	-	11.4182	5.98e-05	0.0893	TCCCCCGCGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	53	-	11.4182	5.98e-05	0.0893	TCCCCCGCGGCG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	99	110	-	11.4182	5.98e-05	0.0893	GGCCCCGGGGCC
ZIC1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	20	33	-	6.7234	5.98e-05	0.0995	GCCCACCCTCTGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	82	95	+	6.7234	5.98e-05	0.0995	GCCCACCCTCTGCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	10	20	+	11.2115	5.98e-05	0.0156	AGTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	10	20	+	11.2115	5.98e-05	0.0156	AGTCCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	74	84	-	11.2115	5.98e-05	0.0156	AGTCCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	74	84	-	11.2115	5.98e-05	0.0156	AGTCCGCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	74	84	-	11.2115	5.98e-05	0.0156	AGTCCGCCCCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	23	+	12.0612	5.98e-05	0.154	CGCAGCTGGGT
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	23	+	12.0612	5.98e-05	0.154	CGCAGCTGGGT
SPDEF	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	55	65	+	10.6	5.98e-05	0.26	AAACGGATGTG
SPDEF	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	60	-	10.6	5.98e-05	0.26	AAACGGATGTG
TP73	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	9	26	+	8.88462	5.98e-05	0.667	AACGCGCCCTGACACGTG
ELF1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	64	-	9.38182	5.98e-05	0.115	GCTCCGGAAATG
ELF1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	83	94	-	9.38182	5.98e-05	0.115	GACCCGGATGCA
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	23	36	-	10.5385	5.98e-05	0.0233	CCTTCTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	34	47	-	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	84	97	-	10.5385	5.98e-05	0.0233	ACACCGCCGCCGGC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	91	104	-	10.5385	5.98e-05	0.0233	CCGCCGCTGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	98	111	-	10.5385	5.98e-05	0.0233	CTCCTGCCTCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	98	111	-	10.5385	5.98e-05	0.0233	CTCCTGCCTCCTCA
EGR1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	18	31	+	10.5385	5.98e-05	0.0233	ACACCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	24	37	+	10.5385	5.98e-05	0.0233	CTGACTCCCCCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	44	57	+	10.5385	5.98e-05	0.0233	CACCCACTTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	44	57	+	10.5385	5.98e-05	0.0233	CACCCACTTCCGCC
YY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	45	56	-	10.8654	5.98e-05	0.28	TAAAATGGAGGA
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	45	56	-	10.8654	5.98e-05	0.28	TAAAATGGAGGA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	34	48	+	6.77586	5.98e-05	0.04	GCCCACCCCCACGCT
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	29	43	-	6.77586	5.98e-05	0.04	GCCCACCCCCACGCT
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	13	24	+	3.52459	5.98e-05	0.598	TGACAACTGCCG
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	13	24	+	3.52459	5.98e-05	0.598	TGACAACTGCCG
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	91	102	-	3.52459	5.98e-05	0.598	TGACAACTGCCG
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	91	102	-	3.52459	5.98e-05	0.598	TGACAACTGCCG
BCL6B	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	97	113	-	-15.9143	5.98e-05	0.94	CTCGTTCTAGGACCCCA
SP8	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	36	47	+	11.0395	5.98e-05	0.0315	ACACCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	68	79	-	11.0395	5.98e-05	0.0315	ACACCGCCCCTT
Klf12	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	10	24	+	8.63934	5.98e-05	0.0641	GACCGCGCCCTGGCC
Klf12	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	91	105	-	8.63934	5.98e-05	0.0641	GACCGCGCCCTGGCC
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	35	49	+	10.9423	5.98e-05	0.449	GGGGCGCCCTGACCT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	+	10.9636	5.98e-05	0.219	CATGACTCAGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	-	10.9636	5.98e-05	0.219	CATGACTCAGC
Nr1h3::Rxra	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	24	42	+	10.8387	5.98e-05	0.674	TGGCCGGAAGTCACTCCCC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	73	91	-	10.8387	5.98e-05	0.674	TGGCCGGAAGTCACTCCCC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	73	91	-	10.8387	5.98e-05	0.674	TGGCCGGAAGTCACTCCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	16	36	-	9.87755	5.98e-05	0.0186	GCAGGAGGGGGAGGGGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	38	58	-	9.87755	5.98e-05	0.0186	GAGGCAGGCTTGGAGGAGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	47	67	-	9.87755	5.98e-05	0.0186	TGGGGAGGACGGGAAGAACCA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	62	82	-	9.87755	5.98e-05	0.0186	GGGGGTGGAGGAGGCGGTATC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	31	51	+	9.87755	5.98e-05	0.0186	GGGGGTGGAGGAGGCGGTATC
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	42	62	+	9.87755	5.98e-05	0.0186	GGAGGAGCCCCGAAGTGGAAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	57	77	+	9.87755	5.98e-05	0.0186	GAGGCAGGCTTGGAGGAGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	90	110	+	9.87755	5.98e-05	0.0186	GAAGCAGCGATCGGAGATGGA
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	33	44	-	9.42623	5.98e-05	0.106	TACCGGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	33	44	-	9.42623	5.98e-05	0.106	TACCGGGAAGTC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	15	30	+	-8.67308	5.98e-05	0.329	GGACGCCCCTCGACCC
BATF3	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	57	70	-	1.39394	5.98e-05	0.198	GAATGACGTGACCC
ZNF410	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	24	40	-	-2.49091	5.98e-05	1	TGCATCCCCAAATAACC
ZNF410	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	76	92	+	-2.49091	5.98e-05	1	TGCATCCCCAAATAACC
ZNF410	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	76	92	+	-2.49091	5.98e-05	1	TGCATCCCCAAATAACC
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	18	30	+	11.2698	5.98e-05	1	AGACATGAATCAC
Hoxc9	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	30	42	-	11.2698	5.98e-05	1	AGACATGAATCAC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	41	51	+	11.3455	5.99e-05	0.0702	CGCCCAGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	41	51	+	11.3455	5.99e-05	0.0702	CGCCCAGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	-	11.3455	5.99e-05	0.0702	TGCCCCAGGGG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	-	11.3455	5.99e-05	0.0702	TGCCCCAGGGG
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	43	53	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	44	54	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	44	54	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	45	55	+	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	60	70	-	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	61	71	-	11.9322	5.99e-05	1	GGGCTATAAAA
CDX2	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	62	72	-	11.9322	5.99e-05	1	GGGCTATAAAA
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	8	19	+	5.37805	5.99e-05	0.631	TTTTCCACCAAG
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	8	19	+	5.37805	5.99e-05	0.631	TTTTCCACCAAG
E2F8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	88	99	+	5.37805	5.99e-05	0.631	TTTCCCGCTCAA
E2F8	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	96	107	-	5.37805	5.99e-05	0.631	TTTTCCACCAAG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	61	76	-	10.4909	5.99e-05	0.0395	CTCCTCCCACGCTGCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	61	76	-	10.4909	5.99e-05	0.0395	CTCCTCCCACGCTGCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	61	76	-	10.4909	5.99e-05	0.0395	CTCCTCCCACGCTGCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	61	76	-	10.4909	5.99e-05	0.0395	CTCCTCCCACGCTGCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	61	76	-	10.4909	5.99e-05	0.0395	CTCCTCCCACGCTGCG
RUNX3	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	21	30	+	11.7115	5.99e-05	0.439	AGACCACAGA
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	26	36	-	10.9818	5.99e-05	0.209	TGGTGGCTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	83	93	-	10.9818	5.99e-05	0.209	TGGTGGCTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	83	93	-	10.9818	5.99e-05	0.209	TGGTGGCTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	83	93	-	10.9818	5.99e-05	0.209	TGGTGGCTCAC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	83	93	-	10.9818	5.99e-05	0.209	TGGTGGCTCAC
HES5	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	12	23	-	3.24138	5.99e-05	0.298	CTGCACGCGCCG
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	7	15	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	7	15	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	10	18	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	10	18	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	40	48	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	42	50	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	46	54	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	47	55	+	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	1	9	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE__mrna.noflip.NA__chr11:118972528..118972642,-__1252.1.0.0	42	50	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	60	68	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	62	70	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	62	70	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	62	70	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	64	72	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	65	73	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	65	73	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	67	75	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	67	75	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	78	86	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	78	86	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	97	105	-	10.2105	5.99e-05	0.215	CCGCCCGGA
THAP1	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	100	108	-	10.2105	5.99e-05	0.215	CCGCCCGGA
Myog	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	78	+	12.0408	5.99e-05	0.154	CGCAGCTGGCA
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	31	40	-	11.051	5.99e-05	0.0224	AGGGTGTGCC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	31	40	-	11.051	5.99e-05	0.0224	AGGGTGTGCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	13	25	-	12.0408	5.99e-05	0.174	CCCAGCTGGCCCC
RXRA::VDR	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	95	109	-	6.33028	5.99e-05	1	GGGTTGCTGGGCTCG
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	95	109	-	6.33028	5.99e-05	1	GGGTTGCTGGGCTCG
STAT1::STAT2	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	75	89	+	9.87879	5.99e-05	0.308	CTCGTTTCACTTCCT
STAT1::STAT2	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	26	40	-	9.87879	5.99e-05	0.308	CTCGTTTCACTTCCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	23	-	11.5091	5.99e-05	0.0551	CCCCCCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	39	49	-	11.5091	5.99e-05	0.0551	AGCCTCACGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	39	49	-	11.5091	5.99e-05	0.0551	AGCCTCACGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	39	49	-	11.5091	5.99e-05	0.0551	AGCCTCACGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	39	49	-	11.5091	5.99e-05	0.0551	AGCCTCACGCA
TFAP2A	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	66	76	+	11.5091	5.99e-05	0.0551	AGCCTCACGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	15	+	10.2241	5.99e-05	0.0554	GGCCCGAGGGGGC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	+	10.2241	5.99e-05	0.0554	TGCCTGTGCGGCA
Rarb(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	39	55	+	-1.87879	5.99e-05	0.861	CGTTAGCACAAAGGTCA
Rarb(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	39	55	+	-1.87879	5.99e-05	0.861	CGTTAGCACAAAGGTCA
Dmbx1	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	14	30	+	11.5789	5.99e-05	1	TTAGGAGGATTATTAAT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	29	39	+	6.04082	5.99e-05	0.327	GGTGAGTCACA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	33	43	-	6.04082	5.99e-05	0.327	GGTGAGTCACA
ESR1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	63	79	+	0.272727	5.99e-05	0.514	GCGGGCAGGCTGAGCTC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	84	94	+	10.7414	5.99e-05	0.0211	ACCCCGCCCGC
KLF16	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	31	41	-	10.7414	5.99e-05	0.0211	ACCCCGCCCGC
ATF7	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	28	41	-	7.84286	5.99e-05	0.187	TAATGACGCCACAG
ATF7	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	74	87	+	7.84286	5.99e-05	0.187	TAATGACGCCACAG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	17	31	-	10.5455	5.99e-05	0.108	TTCTCGCGTCGCCGT
ZBTB33	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	100	114	-	10.5455	5.99e-05	0.108	TTCTCGCGTCGCCGT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	1	15	+	10.5455	5.99e-05	0.108	TTCTCGCGTCGCCGT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	1	15	+	10.5455	5.99e-05	0.108	TTCTCGCGTCGCCGT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	84	98	+	10.5455	5.99e-05	0.108	TTCTCGCGTCGCCGT
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	14	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	14	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	26	35	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	26	35	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	55	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	55	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	55	+	11.431	5.99e-05	0.112	GCCGGAAGGA
ELK3	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	66	+	11.431	5.99e-05	0.112	GCCGGAAGGA
Creb5	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	86	97	+	9.12727	5.99e-05	0.221	GGTGACGTCAGG
Creb5	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	29	-	9.12727	5.99e-05	0.221	GGTGACGTCAGG
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	7	16	+	10.4796	6e-05	0.227	TTGGATTTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	7	16	+	10.4796	6e-05	0.227	TTGGATTTCC
RREB1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	76	95	-	4.11009	6e-05	0.0614	CCACCCCCGCCCCGCCCCGC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	20	39	+	4.11009	6e-05	0.0614	CCACCCCCGCCCCGCCCCGC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	20	39	+	4.11009	6e-05	0.0614	CCACCCCCGCCCCGCCCCGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	20	39	+	4.11009	6e-05	0.0614	CCACCCCCGCCCCGCCCCGC
IRF9	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	63	77	-	-2.05455	6e-05	0.608	TATAAAAATGAAAGT
SPDEF	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	70	80	+	10.5818	6e-05	0.26	TGCCGGAAGTA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	45	58	+	8.98387	6e-05	0.731	TAGAAATTGAAAGA
IRF7	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	79	92	+	8.98387	6e-05	0.731	TAGAAATTGAAAGA
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	14	27	-	8.5082	6e-05	0.185	GGCCCCACGTGAGC
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	14	27	-	8.5082	6e-05	0.185	GGCCCCACGTGAGC
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	94	107	-	8.5082	6e-05	0.185	GGCCCCACGTGAGC
HSF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	45	57	-	10.9634	6e-05	1	TTCCAGAACCTCC
HSF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	45	57	-	10.9634	6e-05	1	TTCCAGAACCTCC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	35	49	+	10.6724	6e-05	0.0137	GCTCCTCCCACAGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	69	83	+	10.6724	6e-05	0.0137	GCCCCTCCCAAGTGC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.0.0	73	87	+	10.6724	6e-05	0.0137	GCTCCTCCCTTCAGC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr22:28315407..28315521,+__522.1.1.0	73	87	+	10.6724	6e-05	0.0137	GCTCCTCCCTTCAGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	10	24	-	10.6724	6e-05	0.0137	GCCCCTCCCAAGTGC
SP2	FLIPPED__Antisense.flip.antisense__chr22:28315407..28315521,-__2683.1.0.0	28	42	-	10.6724	6e-05	0.0137	GCTCCTCCCTTCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	29	43	-	10.6724	6e-05	0.0137	CCTCCTCCCCTTCGA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	29	43	-	10.6724	6e-05	0.0137	CCTCCTCCCCTTCGA
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	18	34	+	4.25455	6e-05	0.0288	GAAGCCACGTCCCCCAT
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	18	34	+	4.25455	6e-05	0.0288	GAAGCCACGTCCCCCAT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	10	26	-	4.25455	6e-05	0.0288	GAAGTCCCGCCCCACGC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	10	26	-	4.25455	6e-05	0.0288	GAAGTCCCGCCCCACGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	24	40	-	4.25455	6e-05	0.0288	GAGAACACACCCCTCCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	24	40	-	4.25455	6e-05	0.0288	GAGAACACACCCCTCCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	24	40	-	4.25455	6e-05	0.0288	GAGAACACACCCCTCCT
SP4	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	58	74	+	4.25455	6e-05	0.0288	CCGTCTCCGCCCACCCC
SP4	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	89	105	+	4.25455	6e-05	0.0288	GAAGTCCCGCCCCACGC
Klf1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	45	55	+	11.1061	6e-05	0.0469	GGTCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	60	70	-	11.1061	6e-05	0.0469	GGTCCCGCCCA
NR3C1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	62	78	-	5.65306	6e-05	1	GGGGACACCCTGGGCCC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	8	21	-	6	6e-05	0.0723	GGGCGGCTAGGGGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	69	82	-	6	6e-05	0.0723	GAGGGGCTCGGGGC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	68	81	+	6	6e-05	0.0723	GTGGCGCAGGGGAG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	68	81	+	6	6e-05	0.0723	GTGGCGCAGGGGAG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	68	81	+	6	6e-05	0.0723	GTGGCGCAGGGGAG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	68	81	+	6	6e-05	0.0723	GTGGCGCAGGGGAG
MEF2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	70	81	-	7.38182	6e-05	1	CCCAAAAATAGA
MEF2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	70	81	-	7.38182	6e-05	1	CCCAAAAATAGA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.569	6e-05	0.107	GCCGGAAGCT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.569	6e-05	0.107	GCCGGAAGCT
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	45	60	+	7.01724	6e-05	0.316	TGTTGACTTAGTAACT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	70	80	-	11.4828	6e-05	0.0682	CGGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	18	28	+	11.4828	6e-05	0.0682	CGGAGGGAAGG
E2F6	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	35	45	+	11.4828	6e-05	0.0682	CGGAGGGAAGG
JUND	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	19	29	+	10.8936	6e-05	0.222	TGTGAGTCAGA
GSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	9.67925	6e-05	1	GCCAATTAGA
GSX2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	9.67925	6e-05	1	GCCAATTAGA
GSX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	9.67925	6e-05	1	GCCAATTAGA
GSX2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	9.67925	6e-05	1	GCCAATTAGA
Hoxd9	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	2	11	+	11.0139	6e-05	1	GCCATTAAAC
CENPB	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	18	32	-	10.6731	6e-05	0.848	TCCGCCTCCATCGCA
CENPB	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	83	97	+	10.6731	6e-05	0.848	TCCGCCTCCATCGCA
Hoxd8	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	62	78	-	11.0714	6e-05	1	TTATTAATAACTGGCTT
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	16	28	+	10.5738	6.01e-05	0.0586	AGCCTCCCAGGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	49	61	-	10.5738	6.01e-05	0.0586	AGCCTCCCAGGCA
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	87	99	-	10.5738	6.01e-05	0.0586	AGCCTCCCAGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	109	-	10.5738	6.01e-05	0.0586	ACCCCCGGCGGCG
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	93	102	-	11.2828	6.01e-05	0.316	CGGGCTTTTC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	93	102	-	11.2828	6.01e-05	0.316	CGGGCTTTTC
PAX9	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	87	103	-	1.01818	6.01e-05	0.501	TGTCCTGGCTGGGCGAA
Stat4	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	58	71	+	11.5345	6.01e-05	0.311	GTGACAGGAAGTAG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	18	31	-	11.5345	6.01e-05	0.311	GTTCTGGGAATTGT
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	18	31	-	11.5345	6.01e-05	0.311	GTTCTGGGAATTGT
Stat4	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	44	57	-	11.5345	6.01e-05	0.311	GTGACAGGAAGTAG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	54	67	-	11.5345	6.01e-05	0.311	GTTCTGGGAATTGT
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	54	67	-	11.5345	6.01e-05	0.311	GTTCTGGGAATTGT
PRDM1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	47	61	+	10.6182	6.01e-05	0.315	GGAAGAAGAAAGGGA
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	52	65	-	6.75	6.01e-05	0.56	ACAAAAGCTGTTAA
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	52	65	-	6.75	6.01e-05	0.56	ACAAAAGCTGTTAA
Arntl	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	48	57	-	11.4262	6.01e-05	0.259	AGTCACGCGC
Arntl	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	4	13	+	11.4262	6.01e-05	0.259	AGTCACGCGC
Arntl	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	30	39	+	11.4262	6.01e-05	0.259	AGTCACGCGC
Arntl	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	58	67	+	11.4262	6.01e-05	0.259	AGTCACGCGC
RXRA::VDR	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	62	76	-	6.31193	6.01e-05	1	AAGTTGACGAGTTCG
RXRA::VDR	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	39	53	+	6.31193	6.01e-05	1	AAGTTGACGAGTTCG
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	13	27	+	6.75862	6.01e-05	0.0401	TCACGCTCCCCCACC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	13	27	+	6.75862	6.01e-05	0.0401	TCACGCTCCCCCACC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	16	30	-	6.75862	6.01e-05	0.0401	TCACGCTCCCCCACC
SP1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	32	42	+	11.1923	6.01e-05	0.0157	GTCCCACCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	81	91	+	11.1923	6.01e-05	0.0157	GTCCCACCCTT
SP1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	73	83	-	11.1923	6.01e-05	0.0157	GTCCCACCCTT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	28	42	-	7.68421	6.01e-05	0.247	CCTGTGAGTCACCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	28	42	-	7.68421	6.01e-05	0.247	CCTGTGAGTCACCAG
REST	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	63	83	-	5.44898	6.01e-05	0.219	CTGTGGACCAAGGTCAGTGTT
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	-	7.18367	6.01e-05	0.193	GGTGACGTAAGA
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	-	7.18367	6.01e-05	0.193	GGTGACGTAAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	-	7.18367	6.01e-05	0.193	GGTGACGTAAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	-	7.18367	6.01e-05	0.193	GGTGACGTAAGA
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	-	7.18367	6.01e-05	0.193	GGTGACGTAAGA
EGR2	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	18	28	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	43	53	+	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	34	44	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	34	44	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	34	44	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	34	44	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	58	68	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	71	81	+	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	62	72	-	9.77586	6.01e-05	0.0825	CCACCCCCGCT
EGR2	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	87	97	+	9.77586	6.01e-05	0.0825	CCACCCCCGCT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	25	35	-	11.7143	6.01e-05	0.79	ATTTCACAAGT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	25	35	-	11.7143	6.01e-05	0.79	ATTTCACAAGT
CEBPA	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	80	90	+	11.7143	6.01e-05	0.79	ATTTCACAAGT
Gabpa	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	28	38	+	11.1475	6.01e-05	0.0623	CCGGAAATGTC
Gabpa	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	98	108	+	11.1475	6.01e-05	0.0623	CCGGAAATGTC
Gabpa	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	7	17	-	11.1475	6.01e-05	0.0623	CCGGAAATGTC
Gabpa	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	77	87	-	11.1475	6.01e-05	0.0623	CCGGAAATGTC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	6	20	+	10.5818	6.01e-05	0.109	CGCACCCCGGCGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	24	38	+	10.5818	6.01e-05	0.109	GGGCGCCCGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	34	48	-	10.5818	6.01e-05	0.109	GCTCCCCCGCAGCCC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	95	109	-	10.5818	6.01e-05	0.109	CGCACCCCGGCGCGC
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	84	94	-	11.6923	6.01e-05	0.393	CTTATGAGTCA
CREB3L1	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	52	65	-	8.87879	6.01e-05	0.303	CTGACACATCAACT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	63	82	-	4.10092	6.01e-05	0.0614	CCCGCCCCCAACCCACTGCC
RREB1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	85	104	-	4.10092	6.01e-05	0.0614	CAACCCTCCAACCCCGACGC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	11.1034	6.01e-05	0.199	AGCACGTGCG
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	11.1034	6.01e-05	0.199	AGCACGTGCG
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	11.1034	6.01e-05	0.199	AGCACGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	11.1034	6.01e-05	0.199	AGCACGTGCG
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	27	41	-	10.0303	6.02e-05	0.311	GCGTGTGACTGTGCA
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	17	30	-	6.70213	6.02e-05	0.0995	GCACCCACGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	17	30	-	6.70213	6.02e-05	0.0995	GCACCCACGCGGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	17	30	-	6.70213	6.02e-05	0.0995	GCACCCACGCGGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	52	65	+	6.70213	6.02e-05	0.0995	GCACCCACGCGGCG
HOXC10	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	60	-	11.7818	6.02e-05	1	CTCGTAAAAG
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	23	36	-	9.10345	6.02e-05	0.0339	TACCCCTCCCCCCC
KLF14	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	53	66	-	9.10345	6.02e-05	0.0339	AGCTCCGCCTCCTC
Hoxa9	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	21	31	+	11.1579	6.02e-05	1	ACCATAAAACA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	23	36	-	5.9898	6.02e-05	0.0723	GGGGCCAAGAGGAA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	10	23	+	5.9898	6.02e-05	0.0723	GTGGGTGACTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	10	23	+	5.9898	6.02e-05	0.0723	GTGGGTGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	10	23	+	5.9898	6.02e-05	0.0723	GTGGGTGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	10	23	+	5.9898	6.02e-05	0.0723	GTGGGTGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	74	87	+	5.9898	6.02e-05	0.0723	GGGGCCAAGAGGAA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	-	10.3607	6.02e-05	0.0644	CCCCTGGCGGGCA
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	+	10.3607	6.02e-05	0.0644	CCCCTGGCGGGCA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	29	43	+	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	29	43	+	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	29	43	+	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	29	43	+	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	25	39	-	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	25	39	-	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	30	44	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	30	44	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	34	48	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	34	48	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	34	48	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	34	48	-	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	54	68	+	8.62295	6.02e-05	0.0641	AAACACACCCTAACT
Klf12	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	54	68	-	8.62295	6.02e-05	0.0641	AGCCCCGCCCCGCGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	71	85	+	8.62295	6.02e-05	0.0641	TACCACGTCCTTGAA
Klf12	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	71	85	+	8.62295	6.02e-05	0.0641	GGCCGCGCCCCGCCC
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	38	51	-	4.19697	6.02e-05	0.379	TCCCCCACACTGAG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	38	51	-	4.19697	6.02e-05	0.379	TCCCCCACACTGAG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	38	51	-	4.19697	6.02e-05	0.379	TCCCCCACACTGAG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	38	51	-	4.19697	6.02e-05	0.379	TCCCCCACACTGAG
ZBTB7B	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	2	13	-	10.8276	6.02e-05	0.365	GCCACCCCCGAC
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	102	113	+	10.8276	6.02e-05	0.365	GCCACCCCCGAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	102	113	+	10.8276	6.02e-05	0.365	GCCACCCCCGAC
DUX4	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	47	57	+	11.0426	6.02e-05	1	AAACTTCATCA
DUX4	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	58	68	-	11.0426	6.02e-05	1	AAACTTCATCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	36	+	11.0263	6.02e-05	0.0316	CCCCCTCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	36	+	11.0263	6.02e-05	0.0316	CCCCCTCCCCTT
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	23	34	-	11.0263	6.02e-05	0.0316	CCCCCTCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	28	39	-	11.0263	6.02e-05	0.0316	CCCCCTCCCCTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	28	39	-	11.0263	6.02e-05	0.0316	CCCCCTCCCCTT
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	9.97581	6.02e-05	0.0476	AGCACGTGAC
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	+	9.97581	6.02e-05	0.0476	GTCACGTGCT
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	-	9.97581	6.02e-05	0.0476	GTCACGTGCT
Tcfl5	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	9.97581	6.02e-05	0.0476	AGCACGTGAC
ELF1	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	5	16	+	9.36364	6.02e-05	0.115	TAGCAGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	80	91	-	9.36364	6.02e-05	0.115	TAGCAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	80	91	-	9.36364	6.02e-05	0.115	TAGCAGGAAGTC
TBX20	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	63	73	-	10.9697	6.02e-05	1	AAAGTGTGAGG
JUN	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	41	53	+	10.6939	6.02e-05	0.303	AACCTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	41	53	+	10.6939	6.02e-05	0.303	AACCTGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	41	53	+	10.6939	6.02e-05	0.303	AACCTGACGTCAT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	47	56	-	10.844	6.02e-05	0.0553	ACCTCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	47	56	-	10.844	6.02e-05	0.0553	ACCTCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	47	56	-	10.844	6.02e-05	0.0553	ACCTCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	47	56	-	10.844	6.02e-05	0.0553	ACCTCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	47	56	-	10.844	6.02e-05	0.0553	ACCTCCCCAC
CREB3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	16	29	-	10	6.02e-05	0.255	GCGCCACGTCTGAG
CREB3	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	77	90	-	10	6.02e-05	0.255	CGGACACGTCTGCG
CREB3	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	25	38	+	10	6.02e-05	0.255	CGGACACGTCTGCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	86	99	+	10	6.02e-05	0.255	GCGCCACGTCTGAG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	86	99	+	10	6.02e-05	0.255	GCGCCACGTCTGAG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	86	99	+	10	6.02e-05	0.255	GCGCCACGTCTGAG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	86	99	+	10	6.02e-05	0.255	GCGCCACGTCTGAG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	58	72	-	10.9038	6.02e-05	0.173	AAGGGAGCCAATGGA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	20	30	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	20	30	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	20	30	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	23	33	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	23	33	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	28	38	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	57	+	11.1951	6.02e-05	0.0221	ACCCCTCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	62	72	+	11.1951	6.02e-05	0.0221	TCCACGCCCTT
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	85	95	+	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	10	20	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	10	20	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	11	21	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	11	21	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	20	30	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	41	51	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	41	51	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	41	51	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	50	60	-	11.1951	6.02e-05	0.0221	ACCCCTCCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	58	68	-	11.1951	6.02e-05	0.0221	CCCACGCACAC
SP3	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	85	95	-	11.1951	6.02e-05	0.0221	ACCCCCCCCCC
EMX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.4867	6.02e-05	1	CCTAATTAGA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	16	27	+	11.4364	6.02e-05	0.0575	CGCCCCCAGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	+	10.2069	6.03e-05	0.0554	CCCCCTGGCGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	+	10.2069	6.03e-05	0.0554	CCCCCTGGCGGGA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	39	49	+	10.3636	6.03e-05	0.0195	AAGCTTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	66	76	-	10.3636	6.03e-05	0.0195	AAGCTTGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	103	113	-	10.3636	6.03e-05	0.0195	GCACATGCCCA
POU4F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	18	31	-	11.063	6.03e-05	1	ATGAAATTTTAATG
POU4F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	18	31	-	11.063	6.03e-05	1	ATGAAATTTTAATG
MNX1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	13	22	-	10.6418	6.03e-05	1	GCTAATTATA
MNX1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	86	+	10.6418	6.03e-05	1	GCTAATTATA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	69	86	-	-13.1053	6.03e-05	0.0516	AGGGAGTAGGAAGGAAGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	18	34	-	4.23636	6.03e-05	0.0289	CCAGAGCCGCCCCTTCT
SP4	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	29	45	-	4.23636	6.03e-05	0.0289	CTGTCCCCACCCCCACC
SP4	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	70	86	+	4.23636	6.03e-05	0.0289	CTGTCCCCACCCCCACC
SP4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	85	101	+	4.23636	6.03e-05	0.0289	GCCGCCGCGCCCCCGCC
NR2C2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	15	29	-	9.64286	6.03e-05	0.122	CGGGGGCGGGGGCGG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	29	43	+	9.64286	6.03e-05	0.122	CAAGCGCAAAGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	41	55	+	9.64286	6.03e-05	0.122	AGAGATGGGAGGGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	59	73	+	9.64286	6.03e-05	0.122	CGGGGGCGGGGGCGG
NR2C2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	60	74	-	9.64286	6.03e-05	0.122	AGAGATGGGAGGGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	72	86	-	9.64286	6.03e-05	0.122	CAAGCGCAAAGGGCG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	86	100	+	9.64286	6.03e-05	0.122	CGGGGGCGGGGGCGG
NFAT5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	51	60	+	11.0968	6.03e-05	1	AATTTCCACG
NFAT5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	51	60	+	11.0968	6.03e-05	1	AATTTCCACG
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	36	54	-	10.7419	6.03e-05	0.149	CGAGTCGGTAGAGCGGGCC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	36	54	-	10.7419	6.03e-05	0.149	CGAGTCGGTAGAGCGGGCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	50	64	+	11.018	6.03e-05	0.184	CTGGAAGAGAAGTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	50	64	+	11.018	6.03e-05	0.184	CTGGAAGAGAAGTCA
HNF4G	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	40	54	+	10.9615	6.03e-05	0.335	ACGGCCCAGAGGTCT
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	61	75	-	10.9615	6.03e-05	0.335	ACGGCCCAGAGGTCT
HNF4G	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	61	75	-	10.9615	6.03e-05	0.335	ACGGCCCAGAGGTCT
HNF4G	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	61	75	-	10.9615	6.03e-05	0.335	ACGGCCCAGAGGTCT
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	61	75	-	10.9615	6.03e-05	0.335	ACGGCCCAGAGGTCT
TFAP4	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	-	11.0909	6.03e-05	0.655	AACAGCTGCC
TFAP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	+	11.0909	6.03e-05	0.655	AACAGCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	66	79	-	10.5192	6.03e-05	0.0235	ACACCGCCCCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	36	49	+	10.5192	6.03e-05	0.0235	ACACCGCCCCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	90	103	+	10.5192	6.03e-05	0.0235	CCGTCTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	90	103	+	10.5192	6.03e-05	0.0235	CCGTCTCCTCCTCC
mix-a	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	56	-	11.9683	6.03e-05	1	ATTTAATTAAC
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	54	64	+	11.3793	6.03e-05	0.521	AAATCACAGAG
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	1	16	-	10.8659	6.03e-05	1	TTAAATGTAAATGAGT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	55	65	-	11.2245	6.04e-05	0.198	CTCAGGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	55	65	-	11.2245	6.04e-05	0.198	CTCAGGTGACT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	62	76	+	7.67105	6.04e-05	0.247	ACAGTGACTCATCAG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	76	86	-	11.4483	6.04e-05	0.275	TTCTGCGGTTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	76	86	-	11.4483	6.04e-05	0.275	TTCTGCGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	76	86	-	11.4483	6.04e-05	0.275	TTCTGCGGTTT
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	102	112	-	11.4483	6.04e-05	0.275	CCCTGTGGGTA
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	103	113	-	11.4483	6.04e-05	0.275	GCCTGTGGTCC
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	103	113	-	11.4483	6.04e-05	0.275	GCCTGTGGTCC
RUNX1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	29	39	+	11.4483	6.04e-05	0.275	TTCTGCGGTTT
ELF5	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	25	35	+	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	30	40	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	30	40	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	48	58	+	11.4727	6.04e-05	0.139	ATGAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	48	58	+	11.4727	6.04e-05	0.139	ATGAGGAAGTT
ELF5	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	57	67	-	11.4727	6.04e-05	0.139	ATGAGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	80	90	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	80	90	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	80	90	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	80	90	-	11.4727	6.04e-05	0.139	AGGCGGAAGCT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	4	21	-	-13.1184	6.04e-05	0.0516	GAAAGTCAAGAAGGATGA
HSF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	21	33	-	9.29091	6.04e-05	1	TTCTAGCACTTCC
HSF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	21	33	-	9.29091	6.04e-05	1	TTCTAGCACTTCC
HSF2	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	33	45	+	9.29091	6.04e-05	1	TTCTAGCACTTCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	59	73	-	6.74138	6.04e-05	0.0401	AAACGCCTGCGCAGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	59	73	-	6.74138	6.04e-05	0.0401	AAACGCCTGCGCAGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	59	73	-	6.74138	6.04e-05	0.0401	AAACGCCTGCGCAGG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	59	73	-	6.74138	6.04e-05	0.0401	AAACGCCTGCGCAGG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	59	73	-	6.74138	6.04e-05	0.0401	AAACGCCTGCGCAGG
MNT	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	12.2121	6.04e-05	0.304	GGCACGTGCG
MNT	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	12.2121	6.04e-05	0.304	GGCACGTGCG
MNT	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	12.2121	6.04e-05	0.304	GGCACGTGCG
MNT	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	12.2121	6.04e-05	0.304	GGCACGTGCG
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	13	23	+	11.0408	6.04e-05	0.531	CATGAGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	13	23	+	11.0408	6.04e-05	0.531	CATGAGGGTGG
Esrra	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	4	14	-	7.89091	6.04e-05	0.926	CTGAAGGGCAT
Esrra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	44	54	+	7.89091	6.04e-05	0.926	CTGAAGGGCAT
Esrra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	44	54	+	7.89091	6.04e-05	0.926	CTGAAGGGCAT
Esrra	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	61	71	-	7.89091	6.04e-05	0.926	CTGAAGGGCAT
Esrra	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	101	111	+	7.89091	6.04e-05	0.926	CTGAAGGGCAT
Myb	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	39	48	+	11.8033	6.04e-05	0.905	GAAACTGTCT
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	48	57	-	11.8033	6.04e-05	0.905	GAAACTGTCT
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	48	57	-	11.8033	6.04e-05	0.905	GAAACTGTCT
Hand1::Tcf3	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	36	45	+	11.4831	6.04e-05	0.93	GGTCTGGAGT
Hand1::Tcf3	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	70	79	-	11.4831	6.04e-05	0.93	GGTCTGGAGT
ERF	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.2714	6.04e-05	0.108	AACGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.2714	6.04e-05	0.108	AACGGAAGTA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.2714	6.04e-05	0.108	AACGGAAGTA
ESR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	17	31	+	10.9231	6.04e-05	0.449	AGGTCACCCAGCTAG
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	17	31	+	10.9231	6.04e-05	0.449	AGGTCACCCAGCTAG
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	17	31	+	10.9231	6.04e-05	0.449	AGGTCACCCAGCTAG
Gfi1	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	17	26	+	11.0366	6.04e-05	0.548	CCAATCCCTG
ZBTB18	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	12	24	-	9.97143	6.04e-05	0.729	GTGCCTGATGTGG
ZBTB18	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	31	43	+	9.97143	6.04e-05	0.729	GTGCCTGATGTGG
ZBTB18	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	91	103	+	9.97143	6.04e-05	0.729	GTGCCTGATGTGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	32	46	+	10.6552	6.04e-05	0.0138	GGTCCGCCTCATCAG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	32	46	+	10.6552	6.04e-05	0.0138	GGTCCGCCTCATCAG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	33	47	+	10.6552	6.04e-05	0.0138	CTCCCTCCCTTGCCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	33	47	+	10.6552	6.04e-05	0.0138	CTCCCTCCCTTGCCA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	33	47	+	10.6552	6.04e-05	0.0138	CTCCCTCCCTTGCCA
SP2	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	12	26	-	10.6552	6.04e-05	0.0138	CACCCGCCCCGCCAC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	5	25	-	9.85714	6.04e-05	0.0188	GGAGGGAGAGCGAAGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	18	38	-	9.85714	6.04e-05	0.0188	GAGGGGGAGGAGAGGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	32	52	-	9.85714	6.04e-05	0.0188	GGGGGGGGCGGGGAGGGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	33	53	-	9.85714	6.04e-05	0.0188	TGGGAAGGGGGTTCATGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	49	69	-	9.85714	6.04e-05	0.0188	GGAGAGGGGGGTGGGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	56	76	-	9.85714	6.04e-05	0.0188	GGAGGGGAGAGCAGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	56	76	-	9.85714	6.04e-05	0.0188	GGAGGGGAGAGCAGGGAGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	69	89	-	9.85714	6.04e-05	0.0188	GGGGCCGGAGAAGAAAAATGA
ZNF263	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	26	46	+	9.85714	6.04e-05	0.0188	GGGGCCGGAGAAGAAAAATGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	29	49	+	9.85714	6.04e-05	0.0188	GGAGGTGGGGCTGGAAGAACT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	29	49	+	9.85714	6.04e-05	0.0188	GGAGGTGGGGCTGGAAGAACT
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	11	24	-	4.18182	6.05e-05	0.379	TACCCCCCACCCAT
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.3636	6.05e-05	0.111	ACCGGAAGGT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	11.3636	6.05e-05	0.111	GCCGGAAGGG
RXRB	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	56	-	1.14545	6.05e-05	0.521	GAGGGTAAAGGTCT
RXRB	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	59	72	+	1.14545	6.05e-05	0.521	GAGGGTAAAGGTCT
EGR4	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	8	23	-	10.4727	6.05e-05	0.0395	TTCCGCTCACCCAGCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	42	57	+	10.4727	6.05e-05	0.0395	TCCCGCCCCCTCGTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	42	57	+	10.4727	6.05e-05	0.0395	TCCCGCCCCCTCGTCC
E2F4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	7	17	-	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	9	19	-	11.2069	6.05e-05	0.0483	AGGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	9	19	-	11.2069	6.05e-05	0.0483	AGGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	9	19	-	11.2069	6.05e-05	0.0483	AGGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	9	19	-	11.2069	6.05e-05	0.0483	AGGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	9	19	-	11.2069	6.05e-05	0.0483	AGGCGCGAGGC
E2F4	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	19	29	-	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	87	97	-	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	87	97	-	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	86	96	+	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	95	105	+	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	95	105	+	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
E2F4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	98	108	+	11.2069	6.05e-05	0.0483	GCGCGGGGAGC
NR1H2::RXRA	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	41	57	-	-4.91011	6.05e-05	1	AGAGGGTAAAGGTCTTG
NR1H2::RXRA	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	58	74	+	-4.91011	6.05e-05	1	AGAGGGTAAAGGTCTTG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	10.2241	6.05e-05	0.249	ATCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	10.2241	6.05e-05	0.249	ATCACGTGGC
Srebf1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	10.2241	6.05e-05	0.249	ATCACGTGGC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	29	48	+	4.08257	6.05e-05	0.0616	ACCCACATCCCCGCCCCCAC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	29	48	+	4.08257	6.05e-05	0.0616	ACCCACATCCCCGCCCCCAC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	5	16	+	11.0132	6.05e-05	0.0316	CCCACGCCTCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	5	16	+	11.0132	6.05e-05	0.0316	CCCACGCCTCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	13	24	-	11.0132	6.05e-05	0.0316	CCCACTCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	13	24	-	11.0132	6.05e-05	0.0316	CCCACTCCTCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	46	57	-	11.0132	6.05e-05	0.0316	CCCACGCCTCTC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	28	42	-	10.8936	6.05e-05	0.32	AGTTGTGATGTCACT
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	-	12.1538	6.05e-05	0.298	CACACGTGTT
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	+	12.1538	6.05e-05	0.298	CACACGTGTT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	+	12.1538	6.05e-05	0.298	CACACGTGTT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	+	12.1538	6.05e-05	0.298	CACACGTGTT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	+	12.1538	6.05e-05	0.298	CACACGTGTT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	+	12.1538	6.05e-05	0.298	CACACGTGTT
ELF3	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	21	33	-	8.60345	6.05e-05	0.167	GCCCCGGAAGCAA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	15	+	10.5574	6.05e-05	0.0586	GGCCCGAGGGGGC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	+	10.5574	6.05e-05	0.0586	CCCCCCTGGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	42	54	-	10.5574	6.05e-05	0.0586	AGCCAGCAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	42	54	-	10.5574	6.05e-05	0.0586	AGCCAGCAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	42	54	-	10.5574	6.05e-05	0.0586	AGCCAGCAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	-	10.5574	6.05e-05	0.0586	CCCCCCTGGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	-	10.5574	6.05e-05	0.0586	CCCCCCTGGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	-	10.5574	6.05e-05	0.0586	CCCCCCTGGGGGC
Tcf12	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	34	44	-	12.0408	6.05e-05	0.182	GACAGGTGCAT
Tcf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	81	+	12.0408	6.05e-05	0.182	GACAGGTGCAT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	81	+	12.0408	6.05e-05	0.182	GACAGGTGCAT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	21	38	+	-13.1316	6.05e-05	0.0516	GAAAGGGAGGCGGGTGTC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	45	54	+	11.0408	6.05e-05	0.0224	AGGGTGGTGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	46	55	+	11.0408	6.05e-05	0.0224	AGGGTGGTGC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	83	97	+	8.60656	6.05e-05	0.0644	GACAACACCCACGTC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	23	35	+	10.3443	6.05e-05	0.0644	TCCCCCTCCGGCC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	72	83	+	10.8103	6.05e-05	0.365	GCACCCACCCAG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	89	105	-	10.0306	6.05e-05	0.368	GGTTTGGGCAGAGCTCA
TFAP2B	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	54	+	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	+	11.4	6.05e-05	0.0893	CGGCCGGAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	+	11.4	6.05e-05	0.0893	CGGCCGGAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	61	72	-	11.4	6.05e-05	0.0893	TGCCCGCGGCCT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	-	11.4	6.05e-05	0.0893	CGGCTCCGGGCA
E2F6	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	61	71	+	11.4655	6.05e-05	0.0687	AGGTGGGAGGC
Hes1	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	4	13	+	10.042	6.05e-05	0.102	GCCACGCGGG
Hes1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	10.042	6.05e-05	0.102	CGCACGTGCA
Hes1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	10.042	6.05e-05	0.102	CCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	43	52	+	10.042	6.05e-05	0.102	GCCACGCGGG
Hes1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	59	68	-	10.042	6.05e-05	0.102	TGCACGCGGC
Hes1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	63	72	-	10.042	6.05e-05	0.102	GCCACGCGGG
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	10.042	6.05e-05	0.102	CCCACGTGAC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	10.042	6.05e-05	0.102	CCCACGTGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	10.042	6.05e-05	0.102	CCCACGTGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	10.042	6.05e-05	0.102	CCCACGTGAC
Hes1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	10.042	6.05e-05	0.102	CGCACGTGCA
Hes1	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	102	111	-	10.042	6.05e-05	0.102	GCCACGCGGG
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	11.5303	6.06e-05	0.585	GGCACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	11.5303	6.06e-05	0.585	GGCACGTGCC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	11.5303	6.06e-05	0.585	GGCACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	11.5303	6.06e-05	0.585	GGCACGTGCC
DUX4	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	28	38	-	11.0213	6.06e-05	1	TAATGGAATCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	22	32	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	22	32	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	22	32	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	22	32	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	60	70	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	78	88	+	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	26	36	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	27	37	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	27	37	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	45	55	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	47	57	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	47	57	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	47	57	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	47	57	-	11.0909	6.06e-05	0.0469	AGACCCGCCCT
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	8	19	-	11.3469	6.06e-05	0.0866	GGCCTCCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	8	19	-	11.3469	6.06e-05	0.0866	GGCCTCCGGGCG
TFAP2C	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	56	67	+	11.3469	6.06e-05	0.0866	GGCCTCCGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	48	59	-	11.3469	6.06e-05	0.0866	GGCCTCCGGGCG
TFAP2C	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	96	107	+	11.3469	6.06e-05	0.0866	GGCCTCCGGGCG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	38	47	+	11.6182	6.06e-05	0.158	CGCACGCGTC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	38	47	+	11.6182	6.06e-05	0.158	CGCACGCGTC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	58	67	-	11.6182	6.06e-05	0.158	CGCACGCGTC
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	58	67	-	11.6182	6.06e-05	0.158	CGCACGCGTC
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	58	67	-	11.6182	6.06e-05	0.158	CGCACGCGTC
ATF7	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	9	22	+	7.81429	6.06e-05	0.188	TGATGACGTCTCAG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	11.6731	6.06e-05	0.137	ACCGGAAGAA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	11.6731	6.06e-05	0.137	ACCGGAAGAA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	27	40	-	11.0455	6.06e-05	0.0593	GCCGCCCGGCCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	27	40	-	11.0455	6.06e-05	0.0593	GCCGCCCGGCCCTG
FOXP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	70	84	-	11.2535	6.06e-05	0.341	GCAAGGAAAAAAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	70	84	-	11.2535	6.06e-05	0.341	GCAAGGAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	70	84	-	11.2535	6.06e-05	0.341	GCAAGGAAAAAAAAG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	74	83	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	74	83	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	74	83	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	74	83	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	93	102	-	11.1714	6.06e-05	0.222	AGCATCTGTT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	93	102	-	11.1714	6.06e-05	0.222	AGCATCTGTT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	93	102	-	11.1714	6.06e-05	0.222	AGCATCTGTT
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	93	102	-	11.1714	6.06e-05	0.222	AGCATCTGTT
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	105	114	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	105	114	-	11.1714	6.06e-05	0.222	AGCTGCTGTT
SP3	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	22	32	-	11.187	6.06e-05	0.0222	GCGACACCCCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233678..91233792,+__878.1.0.0	4	21	+	-13.1447	6.06e-05	0.0516	TGAGATAAGGAAGGGAAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	16	33	+	-13.1447	6.06e-05	0.0516	TGAGATAAGGAAGGGAAG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	34	51	+	-13.1447	6.06e-05	0.0516	TGAGATAAGGAAGGGAAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	69	86	+	-13.1447	6.06e-05	0.0516	GAAGACAAGGAAGGAACA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	64	81	-	-13.1447	6.06e-05	0.0516	TGAGATAAGGAAGGGAAG
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	14	30	-	4.21818	6.06e-05	0.029	TCCCCCCCGCCCCCGTT
SP4	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	29	45	-	4.21818	6.06e-05	0.029	CGCGCCCCGCCCGCCGC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	50	61	-	11.1143	6.06e-05	0.217	GCCGTCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	50	61	-	11.1143	6.06e-05	0.217	GCCGTCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.2.0	56	67	-	11.1143	6.06e-05	0.217	CTCGCCCACCTC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	67	78	-	11.1143	6.06e-05	0.217	GAGGCCCACCGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	67	78	-	11.1143	6.06e-05	0.217	GAGGCCCACCGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	68	79	-	11.1143	6.06e-05	0.217	GAGGCCCACCGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	68	79	-	11.1143	6.06e-05	0.217	GAGGCCCACCGG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	9	20	+	11.1143	6.06e-05	0.217	CTCGCCCACCTC
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	36	47	+	11.1143	6.06e-05	0.217	GAGGCCCACCGG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	37	48	+	11.1143	6.06e-05	0.217	GAGGCCCACCGG
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	62	74	+	7.39344	6.06e-05	1	TACCGGAAGTTTC
HSF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	62	74	+	7.39344	6.06e-05	1	TACCGGAAGTTTC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	17	27	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	17	27	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	58	68	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	58	68	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	60	70	+	10.3455	6.06e-05	0.0195	GCGGGTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	103	113	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	103	113	+	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	33	43	-	10.3455	6.06e-05	0.0195	GCGGGTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	45	55	-	10.3455	6.06e-05	0.0195	GCGGGTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	45	55	-	10.3455	6.06e-05	0.0195	GCGGGTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	55	65	-	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	55	65	-	10.3455	6.06e-05	0.0195	GCGCGGGTGCC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	44	58	+	8.41429	6.06e-05	0.113	GCCCTCCCTTTGTGA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	100	114	-	8.41429	6.06e-05	0.113	GCCCTCCCTTTGTGA
INSM1	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	3	14	+	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	101	112	-	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	101	112	-	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	101	112	-	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	101	112	-	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	101	112	-	10.1939	6.06e-05	0.177	GGCCAGCGGGCT
IRF8	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	63	76	-	-1.92727	6.06e-05	0.752	ATAAAAATGAAAGT
E2F1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	6	17	+	11.2131	6.06e-05	0.419	GATGGCGCCCAC
E2F1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	98	109	-	11.2131	6.06e-05	0.419	GATGGCGCCCAC
SOX8	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	45	60	+	-12.1364	6.06e-05	1	AACAGTTCTCTGTGTT
SOX8	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	55	70	-	-12.1364	6.06e-05	1	AACAGTTCTCTGTGTT
T	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	33	48	+	8.19231	6.06e-05	1	CGTCACAGAGGTGCGA
T	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	50	-	8.19231	6.06e-05	1	CGTCACAGAGGTGCGA
T	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	65	80	+	8.19231	6.06e-05	1	CGTCACAGAGGTGCGA
T	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	82	-	8.19231	6.06e-05	1	CGTCACAGAGGTGCGA
GSX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	48	57	+	9.63492	6.06e-05	1	CCTCATTAGT
GSX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	48	57	+	9.63492	6.06e-05	1	CCTCATTAGT
ELK4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	12	-	11.5273	6.06e-05	0.0626	ACCCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	12	22	-	11.5273	6.06e-05	0.0626	CCTCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	12	22	-	11.5273	6.06e-05	0.0626	CCTCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	12	22	-	11.5273	6.06e-05	0.0626	CCTCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	12	22	-	11.5273	6.06e-05	0.0626	CCTCTTCCGCT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	12	22	-	11.5273	6.06e-05	0.0626	CCTCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	76	-	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ELK4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	39	49	+	11.5273	6.06e-05	0.0626	GCACTTCCGTC
ZIC1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	13	26	+	6.68085	6.06e-05	0.0995	TCCGCCCCGCAGAG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	39	52	+	6.68085	6.06e-05	0.0995	AACGCCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	53	66	+	6.68085	6.06e-05	0.0995	GACCTCCTCCTGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	53	66	+	6.68085	6.06e-05	0.0995	GACCTCCTCCTGGG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	63	76	-	6.68085	6.06e-05	0.0995	AACGCCCCGCCGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	86	99	+	6.68085	6.06e-05	0.0995	GACCTCCTCCTGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	86	99	+	6.68085	6.06e-05	0.0995	GACCTCCTCCTGGG
ZIC1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	89	102	-	6.68085	6.06e-05	0.0995	TCCGCCCCGCAGAG
PLAG1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	40	53	-	5.95918	6.06e-05	0.0723	GGGGGGTCAAGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	62	75	+	5.95918	6.06e-05	0.0723	GGGGGGTCAAGGGG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	-	10.1897	6.06e-05	0.0554	CGCCCAGGAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	-	10.1897	6.06e-05	0.0554	CCCCCTCGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	-	10.1897	6.06e-05	0.0554	CCCCCTCGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	-	10.1897	6.06e-05	0.0554	CCCCCTCGCGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	-	10.1897	6.06e-05	0.0554	CCCCCTCGCGGGA
EMX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.383	6.06e-05	1	CCTAATTAGA
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	59	69	+	10.7241	6.07e-05	0.0213	GCCAGACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	11	21	-	10.7241	6.07e-05	0.0213	CCCCCGCCCCA
KLF16	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	37	47	-	10.7241	6.07e-05	0.0213	CCCCCGCCCCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	16	26	-	11.4909	6.07e-05	0.0551	CGCCTCACGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	16	26	-	11.4909	6.07e-05	0.0551	CGCCTCACGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	16	26	-	11.4909	6.07e-05	0.0551	CGCCTCACGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	16	26	-	11.4909	6.07e-05	0.0551	CGCCTCACGCT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	24	34	-	11.4909	6.07e-05	0.0551	CGCCTCACGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	70	80	+	11.4909	6.07e-05	0.0551	TGCCTCCAGCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	14	23	+	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	14	23	+	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	24	33	+	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	58	67	+	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	95	104	+	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	11	20	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	32	41	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	32	41	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	32	41	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	32	41	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	48	57	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	82	91	-	12.0656	6.07e-05	0.281	AGTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	92	101	-	12.0656	6.07e-05	0.281	AGTGACGTCA
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	35	49	+	10.5636	6.07e-05	0.109	CCCGCCCCGCCGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	35	49	+	10.5636	6.07e-05	0.109	CCCGCCCCGCCGCGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	35	49	+	10.5636	6.07e-05	0.109	CCCGCCCCGCCGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	35	49	+	10.5636	6.07e-05	0.109	CCCGCCCCGCCGCGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	35	49	+	10.5636	6.07e-05	0.109	CCCGCCCCGCCGCGG
EBF1	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	9	22	-	9.40984	6.07e-05	0.365	TTTCCCCAGGGTTC
GCM2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	23	32	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	27	36	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	66	75	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	66	75	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	96	105	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	102	111	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	102	111	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	102	111	+	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	4	13	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	10	19	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	10	19	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	10	19	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	18	27	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	79	88	-	11.3115	6.07e-05	0.718	GATGTGGGTG
GCM2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	83	92	-	11.3115	6.07e-05	0.718	GATGTGGGTG
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	11.3404	6.07e-05	0.12	AGCGGAAGTA
Nkx2-5(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	7	17	+	11.7273	6.07e-05	0.721	GAGCACTCAGA
Nkx2-5(var.2)	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	29	39	-	11.7273	6.07e-05	0.721	CACCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	76	86	+	11.7273	6.07e-05	0.721	CACCACTCCAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	76	86	+	11.7273	6.07e-05	0.721	CACCACTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	98	108	-	11.7273	6.07e-05	0.721	GAGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	98	108	-	11.7273	6.07e-05	0.721	GAGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	98	108	-	11.7273	6.07e-05	0.721	GAGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	98	108	-	11.7273	6.07e-05	0.721	GAGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	98	108	-	11.7273	6.07e-05	0.721	GAGCACTCAGA
TAL1::TCF3	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	22	33	+	11.191	6.07e-05	1	TCACCACCTGTT
TAL1::TCF3	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	35	46	-	11.191	6.07e-05	1	CTAACATCTGTG
TAL1::TCF3	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	69	80	+	11.191	6.07e-05	1	CTAACATCTGTG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	100	-	12.3846	6.07e-05	0.404	ACCACCTGCC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	100	-	12.3846	6.07e-05	0.404	ACCACCTGCC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	100	-	12.3846	6.07e-05	0.404	ACCACCTGCC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	10	23	+	11.4423	6.07e-05	0.223	TCAGCATGAGTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	10	23	+	11.4423	6.07e-05	0.223	TCAGCATGAGTCAT
Id2	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	5	12	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	13	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	13	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	20	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	22	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	19	26	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	26	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	19	26	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	26	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	20	27	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	20	27	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	20	27	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	20	27	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	20	27	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	13	20	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	15	22	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	15	22	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	15	22	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	15	22	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	16	23	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	16	23	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	35	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	38	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	38	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	24	31	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	43	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	32	39	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	49	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	53	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	53	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	46	53	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	53	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	56	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	56	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	56	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	56	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	56	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	43	50	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	57	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	57	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	58	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	58	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	47	54	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	50	57	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	50	57	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	50	57	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	50	57	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	53	60	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	53	60	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	70	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	70	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	72	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	62	69	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	66	73	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	66	73	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	66	73	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	66	73	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	83	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	80	87	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	98	105	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	103	110	+	12.7705	6.07e-05	0.306	CCACGTGA
Id2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	96	103	-	12.7705	6.07e-05	0.306	CCACGTGA
Id2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	102	109	-	12.7705	6.07e-05	0.306	CCACGTGA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	8	22	+	6.72414	6.07e-05	0.0401	ACCCGCCCCCACCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	8	22	+	6.72414	6.07e-05	0.0401	ACCCGCCCCCACCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	27	41	-	6.72414	6.07e-05	0.0401	TCACGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	27	41	-	6.72414	6.07e-05	0.0401	TCACGGCCCCGCCCC
EGR3	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	42	56	-	6.72414	6.07e-05	0.0401	CTCCCCCTCCGCCCT
EGR3	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	59	73	+	6.72414	6.07e-05	0.0401	CTCCCCCTCCGCCCT
Dlx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	19	28	+	10.0088	6.07e-05	1	CACAATTACC
E2F8	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	6	17	+	5.31707	6.07e-05	0.631	TTTCCCGCATAG
E2F8	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	4	15	-	5.31707	6.07e-05	0.631	TTTCCCGCATAG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	14	+	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	14	+	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	14	+	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	14	+	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	21	+	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	+	11.3273	6.07e-05	0.0702	CCCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	+	11.3273	6.07e-05	0.0702	CCCCTCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	8	18	-	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	8	18	-	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	-	11.3273	6.07e-05	0.0702	TGCTTCAGGCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	94	104	-	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	98	108	-	11.3273	6.07e-05	0.0702	TGCCCCCGGCC
Mecom	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	70	83	+	8.77528	6.08e-05	1	GAGAAAAGACTATC
TP63	WILDTYPE__Antisense.noflip.NA__chr12:26278988..26279102,-__224.1.0.0	97	114	+	-1.43103	6.08e-05	0.935	GGCAGGTCGGATCACGTT
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	28	41	-	5.94898	6.08e-05	0.0723	GGGGTGGAATGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	28	41	-	5.94898	6.08e-05	0.0723	GGGGTGGAATGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	28	41	-	5.94898	6.08e-05	0.0723	GGGGTGGAATGGGG
HINFP	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	24	35	+	10.9242	6.08e-05	0.109	AGGCGTCCGCCT
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	80	91	-	10.9242	6.08e-05	0.109	AGGCGTCCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	80	91	-	10.9242	6.08e-05	0.109	AGGCGTCCGCCT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	22	39	-	-13.1711	6.08e-05	0.0518	GGAAAGAGGTCAGCAGAC
ALX3	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	7	16	+	10.4158	6.08e-05	1	TTCAATTAAA
SPIC	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	58	71	+	11.0423	6.08e-05	0.261	GGACAACGGAAGTA
Crx	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	57	67	-	11.431	6.08e-05	1	GAGGGGATTAC
Crx	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	44	54	+	11.431	6.08e-05	1	GAGGGGATTAC
Foxd3	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	34	45	+	11.5109	6.08e-05	1	GCTTGTTTGCTT
SP1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	18	28	-	11.1731	6.08e-05	0.0158	GCTCCGCCTTT
SP1	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	37	47	+	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	34	44	-	11.1731	6.08e-05	0.0158	GCTCCGCCTTT
SP1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	37	47	-	11.1731	6.08e-05	0.0158	GCTCCGCCTTT
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	56	66	-	11.1731	6.08e-05	0.0158	TCTCCTCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	68	78	+	11.1731	6.08e-05	0.0158	GCTCCGCCTTT
SP1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	71	81	+	11.1731	6.08e-05	0.0158	GCTCCGCCTTT
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	64	74	-	11.1731	6.08e-05	0.0158	TCTCCTCCTCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	76	86	+	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	67	77	-	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	68	78	-	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	68	78	-	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	68	78	-	11.1731	6.08e-05	0.0158	TTTCCTCCCCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	90	100	-	11.1731	6.08e-05	0.0158	TCTCCTCCTCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	98	108	-	11.1731	6.08e-05	0.0158	TCTCCTCCTCT
Foxa2	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	51	62	+	11.5	6.08e-05	1	TATTTATTTAGC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	1	15	-	10.5152	6.09e-05	0.109	TTCCCGCGGGAGACC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	1	15	-	10.5152	6.09e-05	0.109	TTCCCGCGGGAGACC
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	80	94	-	10.5152	6.09e-05	0.109	ATCCCGCGGGCTCGT
EHF	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	37	48	+	10.4754	6.09e-05	0.133	AAGCCGGACGTG
EHF	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	61	72	+	10.4754	6.09e-05	0.133	AAGCCGGACGTG
EHF	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	43	54	-	10.4754	6.09e-05	0.133	AAGCCGGACGTG
EHF	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	67	78	-	10.4754	6.09e-05	0.133	AAGCCGGACGTG
CREB3L1	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	30	43	-	8.84848	6.09e-05	0.303	CAGCCGCGTCACCG
CREB3L1	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	72	85	+	8.84848	6.09e-05	0.303	CAGCCGCGTCACCG
ATF7	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	49	62	+	7.8	6.09e-05	0.188	CTATGACTTCATCG
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	9.8	6.09e-05	0.254	CCCACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	9.8	6.09e-05	0.254	CCCACGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	9.8	6.09e-05	0.254	CCCACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	9.8	6.09e-05	0.254	CCCACGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	9.8	6.09e-05	0.254	CCCACGTGAT
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	62	79	+	6.83673	6.09e-05	0.979	CGCATGCGCCTGCTTGCT
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	62	79	+	6.83673	6.09e-05	0.979	CGCATGCGCCTGCTTGCT
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	56	73	+	-8.95455	6.09e-05	1	AGGCTCAGGATGTCAATG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	52	65	-	10.5	6.09e-05	0.0237	CCCCCGCCGTCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	52	65	-	10.5	6.09e-05	0.0237	CCCCCGCCGTCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	101	114	-	10.5	6.09e-05	0.0237	CTCCAGCCTCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	101	114	-	10.5	6.09e-05	0.0237	CTCCAGCCTCCGCG
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	96	108	-	12	6.09e-05	0.174	TGCAGCTGGCTCC
FOSL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.1.0	64	74	-	10.9273	6.09e-05	0.209	GAATGGCTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.0.0	64	74	-	10.9273	6.09e-05	0.209	GAATGGCTCAT
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.1	64	74	-	10.9273	6.09e-05	0.209	GAATGGCTCAT
FOSL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.0	64	74	-	10.9273	6.09e-05	0.209	GAATGGCTCAT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	11.8182	6.09e-05	0.279	GGCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	11.8182	6.09e-05	0.279	GGCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	11.8182	6.09e-05	0.279	AACACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	11.8182	6.09e-05	0.279	AACACGTGCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	11.8182	6.09e-05	0.279	GGCACGTGCC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	11.8182	6.09e-05	0.279	GGCACGTGCC
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	18	28	+	11.431	6.09e-05	0.275	CTCTGTGGTCC
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	18	28	+	11.431	6.09e-05	0.275	CTCTGTGGTCC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	18	28	+	11.431	6.09e-05	0.275	CTCTGTGGTCC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	18	28	+	11.431	6.09e-05	0.275	CTCTGTGGTCC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	18	28	+	11.431	6.09e-05	0.275	CTCTGTGGTCC
RXRG	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	99	112	+	2.17021	6.09e-05	0.48	GGGAGTAAAGGTCG
RXRG	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	3	16	-	2.17021	6.09e-05	0.48	GGGAGTAAAGGTCG
TGIF2	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	46	57	-	8.44037	6.09e-05	0.855	TGACATGTACCA
SP4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	31	47	+	4.2	6.09e-05	0.0291	GCTGCGCCGCCCACCCC
SP4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	68	84	-	4.2	6.09e-05	0.0291	GCTGCGCCGCCCACCCC
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	+	11.3367	6.09e-05	0.0866	CGCCCCGGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	+	11.3367	6.09e-05	0.0866	CGCCCCGGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	+	11.3367	6.09e-05	0.0866	TGCCCGGGGGGC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	-	11.3367	6.09e-05	0.0866	CGCCCCGGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	-	11.3367	6.09e-05	0.0866	CGCCCCGGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	-	11.3367	6.09e-05	0.0866	CGCCCCGGGGGC
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	42	+	9.97143	6.09e-05	0.255	GCGTGACGTCACTG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	42	+	9.97143	6.09e-05	0.255	GCGTGACGTCACTG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	42	+	9.97143	6.09e-05	0.255	GCGTGACGTCACTG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	42	+	9.97143	6.09e-05	0.255	GCGTGACGTCACTG
GCM1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	4	14	-	11.0204	6.09e-05	0.531	CCTGCGGGTCG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	101	111	+	11.0204	6.09e-05	0.531	CCTGCGGGTCG
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	101	111	+	11.0204	6.09e-05	0.531	CCTGCGGGTCG
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	101	111	+	11.0204	6.09e-05	0.531	CCTGCGGGTCG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	101	111	+	11.0204	6.09e-05	0.531	CCTGCGGGTCG
ZIC3	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	23	37	+	8.4	6.09e-05	0.113	AAACCCCCGAGGTGT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	41	55	-	8.4	6.09e-05	0.113	TCCTCCCTGCGGGGG
ZIC3	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	78	92	-	8.4	6.09e-05	0.113	AAACCCCCGAGGTGT
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	76	89	-	5.93878	6.09e-05	0.0723	GGGCGCCTCTGGGA
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	16	-	11.3462	6.09e-05	0.0758	CGCCGGAAGCA
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	99	109	+	11.3462	6.09e-05	0.0758	CGCCGGAAGCA
NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	+	6.02041	6.09e-05	0.327	GCTGAGTCATC
NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	+	6.02041	6.09e-05	0.327	GCTGAGTCATC
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	26	36	-	6.02041	6.09e-05	0.327	CATGACTTATC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	26	36	-	6.02041	6.09e-05	0.327	CATGACTTATC
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	+	11.7288	6.09e-05	1	TGTTACGTCACG
KLF5	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	46	55	-	11.3673	6.1e-05	0.0229	TTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	93	102	-	11.3673	6.1e-05	0.0229	TTCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	10	19	+	11.3673	6.1e-05	0.0229	TTCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	10	19	+	11.3673	6.1e-05	0.0229	TTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	10	19	+	11.3673	6.1e-05	0.0229	TTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	51	60	+	11.3673	6.1e-05	0.0229	GCTACGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	51	60	+	11.3673	6.1e-05	0.0229	GCTACGCCCT
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	40	-	10.5532	6.1e-05	0.0926	TCCGGAAATG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	53	62	-	10.5532	6.1e-05	0.0926	TCCGGAAATG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	93	-	10.5532	6.1e-05	0.0926	TCCGGAAATG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	90	99	-	10.5532	6.1e-05	0.0926	GCCGGAACTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	90	99	-	10.5532	6.1e-05	0.0926	GCCGGAACTC
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	90	99	-	10.5532	6.1e-05	0.0926	GCCGGAACTC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	90	99	-	10.5532	6.1e-05	0.0926	GCCGGAACTC
Gata1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	64	74	+	11.6531	6.1e-05	1	CTCTTATCTTG
Zfx	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	99	112	-	11.0303	6.1e-05	0.0595	AGCGGCCTGGCCTC
Rarb(var.2)	WILDTYPE__mrna.noflip.NA__chr13:33112927..33113041,-__1243.1.0.0	91	107	+	-1.95455	6.1e-05	0.861	GGGTAACCGAGAGGTGA
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	31	42	-	11.2771	6.1e-05	1	TTATGCAAAACT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	40	53	-	9.06897	6.1e-05	0.0342	CTCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	40	53	-	9.06897	6.1e-05	0.0342	CTCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	40	53	-	9.06897	6.1e-05	0.0342	CTCCCCGCCCCCAC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	40	53	-	9.06897	6.1e-05	0.0342	CTCCCCGCCCCCAC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	40	53	-	9.06897	6.1e-05	0.0342	CTCCCCGCCCCCAC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	28	37	+	11.2626	6.1e-05	0.316	CGGGATTTTC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	28	37	+	11.2626	6.1e-05	0.316	CGGGATTTTC
REL	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	78	87	-	11.2626	6.1e-05	0.316	CGGGATTTTC
HES5	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	17	+	3.13793	6.1e-05	0.298	GAGCACGTGGCC
HOXD12	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	61	-	11.082	6.1e-05	1	CCTCGTAAAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	61	71	-	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	25	35	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	25	35	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	25	35	+	11.1897	6.1e-05	0.0483	GGGCGAGAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	25	35	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	25	35	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	27	37	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	29	39	+	11.1897	6.1e-05	0.0483	CGGCGGGGGGG
Hmx2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	48	64	-	10.9342	6.1e-05	1	GCAAGCAAATAAATACT
Hmx2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	48	64	-	10.9342	6.1e-05	1	GCAAGCAAATAAATACT
Hmx2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	48	64	-	10.9342	6.1e-05	1	GCAAGCAAATAAATACT
Hmx2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	48	64	-	10.9342	6.1e-05	1	GCAAGCAAATAAATACT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	9	28	-	4.05505	6.1e-05	0.062	CCACCCCACTCCTCCCCCAA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	9	28	-	4.05505	6.1e-05	0.062	CCACCCCACTCCTCCCCCAA
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	9	20	-	9.33871	6.1e-05	1	TCCAAAAATAAC
MEF2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	9	20	-	9.33871	6.1e-05	1	TCCAAAAATAAC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	55	66	-	9.33871	6.1e-05	1	GCTAATATTAGT
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	55	66	-	9.33871	6.1e-05	1	GCTAATATTAGT
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	84	104	-	5.40816	6.1e-05	0.219	TCCAGCTGCCTGGGCAGGGGT
REST	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	84	104	-	5.40816	6.1e-05	0.219	TCCAGCTGCCTGGGCAGGGGT
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	84	104	-	5.40816	6.1e-05	0.219	TCCAGCTGCCTGGGCAGGGGT
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	84	104	-	5.40816	6.1e-05	0.219	TCCAGCTGCCTGGGCAGGGGT
REST	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	11	31	+	5.40816	6.1e-05	0.219	TCCAGCTGCCTGGGCAGGGGT
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	65	79	+	10.8723	6.1e-05	0.32	TGCCGTGACGCCATC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	104	113	+	12.4754	6.1e-05	0.389	AACACCTGCG
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	104	113	+	12.4754	6.1e-05	0.389	AACACCTGCG
SP8	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	18	29	+	11	6.1e-05	0.0317	GCCCAGCCCACA
SP8	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	20	31	+	11	6.1e-05	0.0317	GCCCAGCCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	35	46	+	11	6.1e-05	0.0317	CCCACCCCCCAC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	35	46	+	11	6.1e-05	0.0317	CCCACCCCCCAC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	33	44	-	11	6.1e-05	0.0317	CCCACCCCCCAC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	45	56	-	11	6.1e-05	0.0317	CCCACCCCCCAC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	68	79	-	11	6.1e-05	0.0317	GACCCGCCCTCT
SP8	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	84	95	-	11	6.1e-05	0.0317	GCCCAGCCCACA
SP8	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	86	97	-	11	6.1e-05	0.0317	GCCCAGCCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	87	98	-	11	6.1e-05	0.0317	CACCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	87	98	-	11	6.1e-05	0.0317	CACCCGCCCAGC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	47	56	+	11.5	6.1e-05	0.105	ACGGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.5	6.1e-05	0.105	AACGGAAGTA
ETV6	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	63	72	-	11.5	6.1e-05	0.105	ACGGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.5	6.1e-05	0.105	AACGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.5	6.1e-05	0.105	AACGGAAGTA
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	11.561	6.1e-05	0.176	GGCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	11.561	6.1e-05	0.176	GGCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	11.561	6.1e-05	0.176	GGCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	11.561	6.1e-05	0.176	GGCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.561	6.1e-05	0.176	GGCACGTGGC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.561	6.1e-05	0.176	GGCACGTGGC
INSM1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	49	60	+	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	43	54	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	43	54	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	55	66	+	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	49	60	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	49	60	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	61	72	+	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	55	66	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	55	66	-	10.1735	6.1e-05	0.177	GGGCTGGGGCTG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	101	111	+	10.8545	6.11e-05	0.209	GGCTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	101	111	+	10.8545	6.11e-05	0.209	GGCTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	101	111	+	10.8545	6.11e-05	0.209	GGCTGACTCAC
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	101	111	+	10.8545	6.11e-05	0.209	GGCTGACTCAC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	11	26	-	10.4545	6.11e-05	0.0395	CTCCTCCGACGCAACC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	11	26	-	10.4545	6.11e-05	0.0395	CTCCTCCGACGCAACC
EGR4	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	32	47	+	10.4545	6.11e-05	0.0395	CTCTGCCCGCCCACGT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	48	63	+	10.4545	6.11e-05	0.0395	CCCCGCCCCCGGGGTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	48	63	+	10.4545	6.11e-05	0.0395	CCCCGCCCCCGGGGTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	48	63	+	10.4545	6.11e-05	0.0395	CCCCGCCCCCGGGGTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	48	63	+	10.4545	6.11e-05	0.0395	CCCCGCCCCCGGGGTC
EGR4	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	56	71	+	10.4545	6.11e-05	0.0395	CTCTGCCCGCCCACGT
EGR4	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	44	59	-	10.4545	6.11e-05	0.0395	CTCTGCCCGCCCACGT
EGR4	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	68	83	-	10.4545	6.11e-05	0.0395	CTCTGCCCGCCCACGT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	97	112	-	10.4545	6.11e-05	0.0395	CTACGCACACCCCTAA
Mitf	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	49	58	-	10.9898	6.11e-05	0.243	GGTCACGGGA
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	47	56	-	11.7273	6.11e-05	0.729	ATTATGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	47	56	-	11.7273	6.11e-05	0.729	ATTATGCAAT
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	-	11.7273	6.11e-05	0.729	ATTACGCAAG
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	1	10	+	11.0727	6.11e-05	0.655	GACAGCTGAG
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	1	10	+	11.0727	6.11e-05	0.655	GACAGCTGAG
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	1	10	+	11.0727	6.11e-05	0.655	GACAGCTGAG
TFAP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	1	10	+	11.0727	6.11e-05	0.655	GACAGCTGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	9	29	-	9.83673	6.11e-05	0.0189	GGAAGAGGGGGAATTAGGGTG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	26	46	-	9.83673	6.11e-05	0.0189	GGAGGGGGAGGGCGAGGGATC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	30	50	-	9.83673	6.11e-05	0.0189	GGGGCCGCCGGGGGGAGGGGT
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	83	103	-	9.83673	6.11e-05	0.0189	GAGGGTTGTAGAGAGGGGAAG
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	83	103	-	9.83673	6.11e-05	0.0189	GAGGGTTGTAGAGAGGGGAAG
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	83	103	-	9.83673	6.11e-05	0.0189	GAGGGTTGTAGAGAGGGGAAG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	83	103	-	9.83673	6.11e-05	0.0189	GAGGGTTGTAGAGAGGGGAAG
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	12	32	+	9.83673	6.11e-05	0.0189	GAGGGTTGTAGAGAGGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	21	41	+	9.83673	6.11e-05	0.0189	GGGGGCGGCGGCGGGGGGGCT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	69	89	+	9.83673	6.11e-05	0.0189	GGAGGGGGAGGGCGAGGGATC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	90	110	+	9.83673	6.11e-05	0.0189	CGGAGAGCGGGAAGAAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	90	110	+	9.83673	6.11e-05	0.0189	CGGAGAGCGGGAAGAAGGAGG
MEF2D	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	48	59	-	6.98182	6.11e-05	0.99	GCTTTAAATAGT
MEF2D	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	69	80	+	6.98182	6.11e-05	0.99	GCTTTAAATAGT
TP73	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	15	32	+	8.82692	6.11e-05	0.667	GCCATGTACCCACATGAT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	+	10.1724	6.11e-05	0.0554	CGCCCGGGCGGCC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	-	10.1724	6.11e-05	0.0554	CGCCCGGGCGGCC
FOS	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	4	14	+	11.5745	6.11e-05	0.238	AGTGACTCAGG
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	72	82	-	11.5745	6.11e-05	0.238	AGTGACTCAGG
FOS	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	101	111	-	11.5745	6.11e-05	0.238	AGTGACTCAGG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	23	+	6.65957	6.11e-05	0.0995	CCCCCCCCCCCGTG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	23	+	6.65957	6.11e-05	0.0995	CCCCCCCCCCCGTG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	92	105	-	6.65957	6.11e-05	0.0995	CCCCCCCCCCCGTG
NR3C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	-	5.42553	6.11e-05	1	GTAAACACCATGTTCCT
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	12	22	+	11.4898	6.11e-05	0.209	GAGTGAGTCAA
JUNB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	12	22	+	11.4898	6.11e-05	0.209	GAGTGAGTCAA
JUNB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	12	22	+	11.4898	6.11e-05	0.209	GAGTGAGTCAA
JUNB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	12	22	+	11.4898	6.11e-05	0.209	GAGTGAGTCAA
JUNB	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	47	57	+	11.4898	6.11e-05	0.209	AGGTGAGTCAA
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	58	68	-	11.4898	6.11e-05	0.209	AGGTGAGTCAA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	58	68	-	11.4898	6.11e-05	0.209	AGGTGAGTCAA
JUNB	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	93	103	-	11.4898	6.11e-05	0.209	GAGTGAGTCAA
STAT3	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	17	27	+	11.2449	6.11e-05	0.306	TTTCTGAGAAT
STAT3	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	87	97	-	11.2449	6.11e-05	0.306	TTTCTGAGAAT
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	7	25	+	8.93443	6.11e-05	0.122	GGCGCAGGAGGTGGCGATG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	59	77	+	8.93443	6.11e-05	0.122	TGCCCTCCAGCTGGAGCTC
SP3	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	15	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	20	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	30	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	61	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	83	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	99	+	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	9	19	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	9	19	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	9	19	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	9	19	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	16	26	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	18	28	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	18	28	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	32	42	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	42	52	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	42	52	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	59	69	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	85	95	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	95	105	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	100	110	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	100	110	-	11.1707	6.11e-05	0.0222	GCCCCTCCTCC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	20	31	+	10.7931	6.11e-05	0.365	CCGACCCCCCTC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	20	31	+	10.7931	6.11e-05	0.365	CCGACCCCCCTC
NFIA	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	3	12	+	12.3111	6.11e-05	1	GTTGCCAAGG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	37	56	-	4.04587	6.12e-05	0.062	CGCCCACCCCCCAGCCGCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	62	81	-	4.04587	6.12e-05	0.062	CCGCCCCCAACCCACTGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	5	16	+	11.4182	6.12e-05	0.0575	CGCCCCTCGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	5	16	+	11.4182	6.12e-05	0.0575	CGCCCCTCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	+	11.4182	6.12e-05	0.0575	CGCCCCGGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	+	11.4182	6.12e-05	0.0575	CGCCCCGGGGGC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	-	11.4182	6.12e-05	0.0575	CGCCCCGGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	6	17	-	11.4182	6.12e-05	0.0575	CGCCCCTCGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	6	17	-	11.4182	6.12e-05	0.0575	CGCCCCTCGGCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	-	11.4182	6.12e-05	0.0575	AGCCCGGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	-	11.4182	6.12e-05	0.0575	CGCCCCGGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	-	11.4182	6.12e-05	0.0575	CGCCCCGGGGGC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	+	11.4182	6.12e-05	0.0575	AGCCCGGCGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	97	108	-	11.4182	6.12e-05	0.0575	CCCCCGGCGGCG
TEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	46	57	-	10.8364	6.12e-05	1	CCTTATATAACC
TEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	46	57	-	10.8364	6.12e-05	1	CCTTATATAACC
TEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	46	57	-	10.8364	6.12e-05	1	CCTTATATAACC
TEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	46	57	-	10.8364	6.12e-05	1	CCTTATATAACC
TEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	46	57	-	10.8364	6.12e-05	1	CCTTATATAACC
TEF	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	58	69	+	10.8364	6.12e-05	1	CCTTATATAACC
PRDM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	86	100	-	10.5818	6.12e-05	0.315	GGGTAGAGAAAGGGG
E2F6	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	4	14	-	11.431	6.12e-05	0.0688	AAGAGGGAGGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	9	19	-	11.431	6.12e-05	0.0688	AAGAGGGAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	58	68	-	11.431	6.12e-05	0.0688	GGGTGGGAACA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	58	68	-	11.431	6.12e-05	0.0688	GGGTGGGAACA
E2F6	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	93	103	-	11.431	6.12e-05	0.0688	GCGAGGGAGGT
E2F6	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	96	106	+	11.431	6.12e-05	0.0688	AAGAGGGAGGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	101	111	+	11.431	6.12e-05	0.0688	AAGAGGGAGGC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	7	17	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	7	17	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	7	17	-	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	24	34	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	30	40	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	30	40	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	48	58	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	49	59	+	10.7069	6.12e-05	0.0214	GCCGCACCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	57	67	-	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	94	104	+	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	98	108	-	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	100	110	-	10.7069	6.12e-05	0.0214	CCCCCGCCCGC
ELK4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	48	-	11.5091	6.12e-05	0.0627	TGGTTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	67	77	+	11.5091	6.12e-05	0.0627	TGGTTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	67	77	+	11.5091	6.12e-05	0.0627	TGGTTTCCGGT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	6	16	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	6	16	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	6	16	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	6	16	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	6	16	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	26	36	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	26	36	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	26	36	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	26	36	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	26	36	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	39	49	+	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	48	58	+	11.4545	6.12e-05	0.139	GCCCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	48	58	+	11.4545	6.12e-05	0.139	GCCCGGAAGCG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	48	58	+	11.4545	6.12e-05	0.139	GCCCGGAAGCG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	48	58	+	11.4545	6.12e-05	0.139	GCCCGGAAGCG
ELF5	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	43	53	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	61	71	+	11.4545	6.12e-05	0.139	GCCCGGAAGCG
ELF5	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	62	72	+	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	54	64	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	54	64	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	54	64	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	54	64	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	54	64	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	56	66	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	56	66	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	56	66	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	56	66	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	66	76	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	66	76	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	66	76	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	66	76	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	66	76	-	11.4545	6.12e-05	0.139	CGCCGGAAGTG
ELF5	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	79	89	+	11.4545	6.12e-05	0.139	CGCCGGAAGTG
MTF1	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	19	32	-	6.58537	6.12e-05	0.5	TGTACACACGACTA
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	79	92	-	6.58537	6.12e-05	0.5	TGTACACACGACTA
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	79	92	-	6.58537	6.12e-05	0.5	TGTACACACGACTA
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	11.6545	6.12e-05	0.128	ACCGGAAGGA
ERG	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.6545	6.12e-05	0.128	CCCGGAAGTC
ERG	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.6545	6.12e-05	0.128	CCCGGAAGTC
CREB3L1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	25	38	+	8.83333	6.12e-05	0.303	CGGCCACGTGACTG
CREB3L1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	40	53	-	8.83333	6.12e-05	0.303	CGGCCACGTGACTG
CREB3L1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	62	75	+	8.83333	6.12e-05	0.303	CGGCCACGTGACTG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	77	90	-	8.83333	6.12e-05	0.303	CGGCCACGTGACTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	60	71	+	9.36066	6.12e-05	0.108	GAGCCGGAAGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	52	68	+	4.18182	6.12e-05	0.0292	CCCGCCCCCCCCCCGTG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	-	11.0345	6.12e-05	0.132	GACAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	29	38	-	11.0345	6.12e-05	0.132	CACAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	29	38	-	11.0345	6.12e-05	0.132	CACAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	-	11.0345	6.12e-05	0.132	GACAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	-	11.0345	6.12e-05	0.132	GACAGCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	79	88	+	11.0345	6.12e-05	0.132	CACAGCTGGG
NHLH1	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	79	88	+	11.0345	6.12e-05	0.132	CACAGCTGGG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	79	88	+	11.0345	6.12e-05	0.132	CACAGCTGGG
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	81	90	+	11.0345	6.12e-05	0.132	CACAGCTGGG
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	19	28	+	10.8165	6.12e-05	0.0553	CCTCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	23	32	-	10.8165	6.12e-05	0.0553	CCTCCCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	24	33	-	10.8165	6.12e-05	0.0553	CCTCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	48	57	-	10.8165	6.12e-05	0.0553	CCTCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	58	67	+	10.8165	6.12e-05	0.0553	CCTCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	58	67	+	10.8165	6.12e-05	0.0553	CCTCCCCCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	28	38	-	11.1148	6.13e-05	0.0634	CAGGAAGTAGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	28	38	-	11.1148	6.13e-05	0.0634	CAGGAAGTAGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	36	50	+	10.5455	6.13e-05	0.109	GGCCGCCCCCGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	36	50	+	10.5455	6.13e-05	0.109	GGCCGCCCCCGGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	53	67	+	10.5455	6.13e-05	0.109	GAGCGCCCGCCGCGT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	23	37	-	10.5	6.13e-05	0.109	CTCGCGCGCGCTCTC
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	23	37	-	10.5	6.13e-05	0.109	CTCGCGCGCGCTCTC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	83	97	-	10.5	6.13e-05	0.109	CCCTCGCGCCGCCGC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	18	32	+	10.5	6.13e-05	0.109	CCCTCGCGCCGCCGC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	33	47	+	10.5	6.13e-05	0.109	TTCCCGCGAGTGGGG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	4	14	-	11.4727	6.13e-05	0.0551	GGCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	4	14	-	11.4727	6.13e-05	0.0551	GGCCTCGGGCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	24	-	11.4727	6.13e-05	0.0551	GGCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	31	41	+	11.4727	6.13e-05	0.0551	CGCCCTCGGCA
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	30	50	+	9.20968	6.13e-05	0.187	TTCCCTTTTCCTTTTTCCTTT
TFE3	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	4	13	-	11.2245	6.13e-05	0.135	GCCACGAGAC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	64	73	+	11.2245	6.13e-05	0.135	GCCACGAGAC
Hic1	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	22	30	+	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	29	37	+	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	82	90	+	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	92	100	+	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	15	23	-	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	25	33	-	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	52	60	-	11.3654	6.13e-05	0.516	ATGCCACCG
Hic1	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	85	93	-	11.3654	6.13e-05	0.516	ATGCCACCG
SOX4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	34	49	+	-12	6.13e-05	1	AAACGAGTTCTGGGTT
SOX4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	66	81	-	-12	6.13e-05	1	AAACGAGTTCTGGGTT
FOXC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	2	12	+	11.6	6.13e-05	1	TATGAAAATAA
FOXC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	2	12	+	11.6	6.13e-05	1	TATGAAAATAA
FOXC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	2	12	+	11.6	6.13e-05	1	TATGAAAATAA
FOXC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	2	12	+	11.6	6.13e-05	1	TATGAAAATAA
CDX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	46	56	-	11.8983	6.13e-05	1	TTGTAATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	46	56	-	11.8983	6.13e-05	1	TTGTAATAAAA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	49	59	-	10.3273	6.13e-05	0.0196	AAGGCTGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	49	59	-	10.3273	6.13e-05	0.0196	AAGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	49	59	-	10.3273	6.13e-05	0.0196	AAGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	49	59	-	10.3273	6.13e-05	0.0196	AAGGCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	66	76	-	10.3273	6.13e-05	0.0196	AAGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	66	76	-	10.3273	6.13e-05	0.0196	AAGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	77	87	-	10.3273	6.13e-05	0.0196	GAGCTCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	77	87	-	10.3273	6.13e-05	0.0196	GAGCTCGCGCG
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	12	27	+	1.86207	6.13e-05	0.357	CTCCCAGGATTCCTGG
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	7	18	+	0.730769	6.13e-05	0.932	TGACTGCTGGCA
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	7	18	+	0.730769	6.13e-05	0.932	TGACTGCTGGCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	7	18	+	0.730769	6.13e-05	0.932	TGACTGCTGGCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	7	18	+	0.730769	6.13e-05	0.932	TGACTGCTGGCA
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	5	16	-	0.730769	6.13e-05	0.932	TGACTGCTGGCA
PROP1	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	4	14	-	10.7164	6.13e-05	1	TAATTGAATAA
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	45	56	-	11.1685	6.13e-05	1	GGACCAGATGGA
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	45	56	-	11.1685	6.13e-05	1	GGACCAGATGGA
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	39	-	11.1429	6.13e-05	0.223	ACCACCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	90	-	11.1429	6.13e-05	0.223	ACCACCTGCT
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	81	+	11.1429	6.13e-05	0.223	ACCACCTGCT
KLF13	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	1	18	+	4.98276	6.13e-05	0.293	TGACCCCGCCCCCTTTTC
KLF13	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	75	92	+	4.98276	6.13e-05	0.293	TGACCCCGCCCCCTTTTC
KLF13	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	23	40	-	4.98276	6.13e-05	0.293	TGACCCCGCCCCCTTTTC
KLF13	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	97	114	-	4.98276	6.13e-05	0.293	TGACCCCGCCCCCTTTTC
KLF14	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	3	16	-	9.05172	6.14e-05	0.0344	CGCCGCTCCCCCTT
KLF14	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	66	79	-	9.05172	6.14e-05	0.0344	GCTCCCGCCCCCAA
Npas2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	+	12.1148	6.14e-05	0.333	CGCACGTGGG
Npas2	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	-	12.1148	6.14e-05	0.333	CGCACGTGGG
Npas2	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	+	12.1148	6.14e-05	0.333	CGCACGTGGG
Npas2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	-	12.1148	6.14e-05	0.333	CGCACGTGGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	36	50	+	9.6	6.14e-05	0.122	GGGTGTCGGGGTTCG
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	35	45	+	11.7091	6.14e-05	0.721	CCCCACTCAAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	35	45	+	11.7091	6.14e-05	0.721	CCCCACTCAAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	35	45	+	11.7091	6.14e-05	0.721	CCCCACTCAAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	35	45	+	11.7091	6.14e-05	0.721	CCCCACTCAAG
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	71	81	-	11.7091	6.14e-05	0.721	TTGCACTCAAC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	3	17	-	6.68966	6.14e-05	0.0403	GCACGCCCCCTCTGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	23	37	-	6.68966	6.14e-05	0.0403	CCCCACCCACGTCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	23	37	-	6.68966	6.14e-05	0.0403	CCCCACCCACGTCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	23	37	-	6.68966	6.14e-05	0.0403	CCCCACCCACGTCCT
EGR3	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	94	108	+	6.68966	6.14e-05	0.0403	CGCCGCCGCCGCCTG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	82	93	+	11.3818	6.14e-05	0.0893	TGCCGCCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	82	93	+	11.3818	6.14e-05	0.0893	TGCCGCCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	82	93	+	11.3818	6.14e-05	0.0893	TGCCGCCGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	82	93	+	11.3818	6.14e-05	0.0893	TGCCGCCGGGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	84	95	-	10.9868	6.14e-05	0.0318	ACCACGCGCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	84	95	-	10.9868	6.14e-05	0.0318	ACCACGCGCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	84	95	-	10.9868	6.14e-05	0.0318	ACCACGCGCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	84	95	-	10.9868	6.14e-05	0.0318	ACCACGCGCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	84	95	-	10.9868	6.14e-05	0.0318	ACCACGCGCCCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	1	17	+	10	6.14e-05	0.368	GGTTGAGAAAGATGTTA
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	8.34615	6.14e-05	0.191	GCCACGTGAT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	8.34615	6.14e-05	0.191	GCCACGTGAT
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	8.34615	6.14e-05	0.191	GCCACGTGAT
Shox2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.22	6.14e-05	1	CTAATTAG
Shox2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.22	6.14e-05	1	CTAATTAG
Shox2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.22	6.14e-05	1	CTAATTAG
Shox2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.22	6.14e-05	1	CTAATTAG
RAX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.292	6.14e-05	1	CTAATTAG
RAX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.292	6.14e-05	1	CTAATTAG
RAX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.292	6.14e-05	1	CTAATTAG
RAX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.292	6.14e-05	1	CTAATTAG
LHX9	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.3559	6.14e-05	1	CTAATTAG
LHX9	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.3559	6.14e-05	1	CTAATTAG
LHX9	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.3559	6.14e-05	1	CTAATTAG
LHX9	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.3559	6.14e-05	1	CTAATTAG
ISX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	11.5932	6.14e-05	1	CTAATTAG
ISX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	11.5932	6.14e-05	1	CTAATTAG
ISX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	11.5932	6.14e-05	1	CTAATTAG
ISX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	11.5932	6.14e-05	1	CTAATTAG
SHOX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.2178	6.14e-05	1	CTAATTAG
SHOX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.2178	6.14e-05	1	CTAATTAG
SHOX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.2178	6.14e-05	1	CTAATTAG
SHOX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.2178	6.14e-05	1	CTAATTAG
FOXO3	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	38	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	80	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	81	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	81	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	81	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	81	+	11.5	6.14e-05	1	GTAAACAG
FOXO3	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	90	+	11.5	6.14e-05	1	GTAAACAG
PDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	10.717	6.14e-05	1	GCAATTAG
PDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	10.717	6.14e-05	1	GCAATTAG
PDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	10.717	6.14e-05	1	GCAATTAG
PDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	10.717	6.14e-05	1	GCAATTAG
PDX1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	10.717	6.14e-05	1	GCAATTAG
FOXD1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	38	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	80	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	81	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	81	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	81	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	81	+	12.4	6.14e-05	1	GTAAACAG
FOXD1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	90	+	12.4	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	1	8	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	1	8	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	1	8	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	1	8	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	4	11	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	4	11	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	4	11	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	4	11	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	19	26	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	19	26	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	19	26	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	19	26	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	25	32	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	35	42	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	53	60	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	64	71	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	83	90	-	11.5	6.14e-05	1	GTAAACAG
FOXO3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	83	90	-	11.5	6.14e-05	1	GTAAACAG
Nobox	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	7	14	-	11.3478	6.14e-05	1	TAATTGCT
Nobox	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	7	14	-	11.3478	6.14e-05	1	TAATTGCT
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	1	8	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	1	8	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	1	8	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	1	8	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	4	11	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	4	11	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	4	11	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	4	11	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	19	26	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	19	26	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	19	26	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	19	26	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	25	32	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	35	42	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	53	60	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	64	71	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	83	90	-	12.4	6.14e-05	1	GTAAACAG
FOXD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	83	90	-	12.4	6.14e-05	1	GTAAACAG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	57	-	10.991	6.14e-05	0.185	CTGGGTCGGAGGTTA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	57	-	10.991	6.14e-05	0.185	CTGGGTCGGAGGTTA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	57	-	10.991	6.14e-05	0.185	CTGGGTCGGAGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	57	-	10.991	6.14e-05	0.185	CTGGGTCGGAGGTTA
ELF3	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	14	26	+	8.55172	6.14e-05	0.167	AAACAGGAAATGA
ELF3	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	15	27	-	8.55172	6.14e-05	0.167	AAACAGGAAATGA
ELF3	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	68	80	-	8.55172	6.14e-05	0.167	GACCAGGAAGCGC
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	68	82	+	9.98485	6.14e-05	0.311	GAGTCTGACAAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.3621	6.14e-05	0.113	TCCGGAAGCT
ELK3	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.3621	6.14e-05	0.113	TCCGGAAGCT
MYBL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	90	104	-	9.5082	6.14e-05	1	GACGGTTGACCGGAC
MYBL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	90	104	-	9.5082	6.14e-05	1	GACGGTTGACCGGAC
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	5	15	+	11.3621	6.14e-05	0.521	CAATCAGAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	23	33	+	11.3621	6.14e-05	0.521	CAATCAGAGTA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	23	33	+	11.3621	6.14e-05	0.521	CAATCAGAGTA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	23	33	+	11.3621	6.14e-05	0.521	CAATCAGAGTA
Nr5a2	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	85	99	-	10.4138	6.14e-05	0.498	CCGCTCAGGGCCAGG
Myod1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	39	+	11.9796	6.15e-05	0.174	GCCAGCTGCGGGC
Myod1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	16	28	-	11.9796	6.15e-05	0.174	GCCAGCTGCGGGC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	39	51	-	11.9796	6.15e-05	0.174	AGCAGCTGGCACT
Myod1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	76	88	-	11.9796	6.15e-05	0.174	GCCAGCTGCGGGC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	76	88	-	11.9796	6.15e-05	0.174	GCCAGCTGCGGGC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	12	26	+	10.6207	6.15e-05	0.014	CCCCCTCCTCTGCTA
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	17	31	-	10.6207	6.15e-05	0.014	GTCCCTCTCTCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	17	31	-	10.6207	6.15e-05	0.014	GTCCCTCTCTCTCCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	27	41	-	10.6207	6.15e-05	0.014	TACCCTCCTCCTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	67	81	+	10.6207	6.15e-05	0.014	ACCCCTCCTACCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	67	81	+	10.6207	6.15e-05	0.014	ACCCCTCCTACCTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	96	110	+	10.6207	6.15e-05	0.014	TTCCCTCCCCGGCCA
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	-	11.7	6.15e-05	0.821	GTTGTGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	-	11.7	6.15e-05	0.821	GTTGTGCAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	-	11.7	6.15e-05	0.821	GTTGTGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	+	11.7	6.15e-05	0.821	GTTGTGCAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	+	11.7	6.15e-05	0.821	GTTGTGCAAC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	85	105	-	5.38776	6.15e-05	0.219	GAAAGCACTGTGAAGAGCTCA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	85	105	-	5.38776	6.15e-05	0.219	GAAAGCACTGTGAAGAGCTCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	5	14	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	5	14	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	5	14	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	13	22	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	29	38	+	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	46	55	+	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	44	53	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	54	63	+	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	52	61	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	62	71	+	11.3061	6.15e-05	0.023	CTCCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	60	69	-	11.3061	6.15e-05	0.023	CTCCCGCCCT
IRF7	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	43	56	+	8.91935	6.15e-05	0.731	AAGAAAATAAAAGC
IRF7	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	59	72	-	8.91935	6.15e-05	0.731	AAGAAAATAAAAGC
IRF7	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	99	112	-	8.91935	6.15e-05	0.731	AAGAAAACCAAAGT
DUX4	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	11	21	+	10.9574	6.15e-05	1	TAAGCCAATCT
USF1	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	47	-	11.2041	6.15e-05	0.198	GGCATGTGTCC
USF1	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	26	36	+	11.2041	6.15e-05	0.198	CTCACATGACT
USF1	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	56	66	+	11.2041	6.15e-05	0.198	GGCATGTGTCC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	84	94	+	11.2041	6.15e-05	0.198	CTCACATGACT
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	84	94	+	11.2041	6.15e-05	0.198	CTCACATGACT
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	100	110	+	11.2041	6.15e-05	0.198	CTCACATGACT
EGR1	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	30	43	-	10.4808	6.15e-05	0.0238	GGCCTGCCGCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	58	71	+	10.4808	6.15e-05	0.0238	CCCTCTCCGCCACC
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	63	76	+	10.4808	6.15e-05	0.0238	GGGACGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	59	72	-	10.4808	6.15e-05	0.0238	CGCCCGCCCTCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	59	72	-	10.4808	6.15e-05	0.0238	CGCCCGCCCTCAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	59	72	-	10.4808	6.15e-05	0.0238	CGCCCGCCCTCAGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	59	72	-	10.4808	6.15e-05	0.0238	CGCCCGCCCTCAGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	72	85	+	10.4808	6.15e-05	0.0238	GGCCTGCCGCCGCC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	12	22	+	11.4138	6.15e-05	0.275	TCCTGTGGCTG
RUNX1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	18	28	+	11.4138	6.15e-05	0.275	TCCTGTGGCTG
TBR1	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	77	86	-	11.3617	6.15e-05	0.898	AGGTGTGGAA
TBR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	1	10	+	11.3617	6.15e-05	0.898	AGGTGTGGAA
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	1	10	+	11.3617	6.15e-05	0.898	AGGTGTGGAA
TBR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	1	10	+	11.3617	6.15e-05	0.898	AGGTGTGGAA
NFE2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	-	5.97959	6.15e-05	0.328	AATGAGTCAGC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	+	10.2951	6.15e-05	0.0644	CGCCTGCCGGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	58	70	-	10.2951	6.15e-05	0.0644	TGCCACAGGGGCA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	-	10.2951	6.15e-05	0.0644	CGCCTGCCGGGCG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	13	23	-	10.7636	6.15e-05	0.372	CTGCCGGGAAG
STAT1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	41	51	-	10.7636	6.15e-05	0.372	CTGCCGGGAAG
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	87	97	-	10.7636	6.15e-05	0.372	TTTCTGAGAAT
STAT1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	17	27	+	10.7636	6.15e-05	0.372	TTTCTGAGAAT
STAT1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	64	74	+	10.7636	6.15e-05	0.372	CTGCCGGGAAG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	37	56	-	4.02752	6.15e-05	0.0622	CGCCCACCCTCCAGCCGCCG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	53	72	+	4.02752	6.15e-05	0.0622	AAACCAACAAAACACTGACC
ETS1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	49	58	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	61	70	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	61	70	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	78	87	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.0.0	78	87	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	98	107	+	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	8	17	-	11.5517	6.15e-05	0.107	GCAGGAAGTG
ETS1	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	21	-	11.5517	6.15e-05	0.107	GCAGGAAGTG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	14	26	+	10.1552	6.15e-05	0.0554	CGCCGCCAGGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	-	10.1552	6.15e-05	0.0554	GGCCCCGTGGGGT
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	+	10.1552	6.15e-05	0.0554	CGCCCGCGCGGCC
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	45	63	-	10.7903	6.15e-05	0.674	TGGCCCAGGATCACTTCTG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	20	32	+	10.5246	6.15e-05	0.0586	GCCCGCGAGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	83	95	-	10.5246	6.15e-05	0.0586	GCCCGCGAGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	83	95	-	10.5246	6.15e-05	0.0586	GCCCGCGAGGGCG
Arx	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	89	105	+	11.0952	6.15e-05	1	TGGGTCTAATTAGTTGA
Klf1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	31	41	+	11.0455	6.15e-05	0.0469	CGTCCCACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	72	82	+	11.0455	6.15e-05	0.0469	GCACCCACCCA
Klf1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	74	84	-	11.0455	6.15e-05	0.0469	CGTCCCACCCT
ID4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	70	79	-	12.377	6.15e-05	0.389	GGCACCTGGG
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	84	93	-	12.377	6.15e-05	0.389	GGCACCTGGG
ID4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	36	45	+	12.377	6.15e-05	0.389	GGCACCTGGG
Mecom	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	38	51	+	8.74157	6.15e-05	1	CAGATAAGAAAATA
Mecom	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	64	77	-	8.74157	6.15e-05	1	CAGATAAGAAAATA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	+	11.3265	6.15e-05	0.0866	CGCCCGACGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	+	11.3265	6.15e-05	0.0866	CGCCCGACGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	-	11.3265	6.15e-05	0.0866	CGCCCGACGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	100	111	+	11.3265	6.15e-05	0.0866	AACCTTGGGGCA
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	38	46	+	11.354	6.15e-05	1	CATGCTAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	38	46	+	11.354	6.15e-05	1	CATGCTAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	48	56	-	11.354	6.15e-05	1	CATGCTAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	48	56	-	11.354	6.15e-05	1	CATGCTAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	61	69	-	11.354	6.15e-05	1	CATGCTAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	61	69	-	11.354	6.15e-05	1	CATGCTAAT
MNT	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	-	12.197	6.15e-05	0.304	CCCACGTGCG
MNT	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	+	12.197	6.15e-05	0.304	CCCACGTGCG
MNT	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	-	12.197	6.15e-05	0.304	CCCACGTGCG
MNT	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	+	12.197	6.15e-05	0.304	CCCACGTGCG
TFCP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	54	63	+	11.3788	6.15e-05	1	AAACCGGTGC
TFCP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	54	63	+	11.3788	6.15e-05	1	AAACCGGTGC
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	24	37	+	8.81818	6.16e-05	0.303	CTGCCACATGCCCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	28	41	-	8.81818	6.16e-05	0.303	CTGCCACATGCCCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	50	68	+	8.91803	6.16e-05	0.122	TGGCCGCCAGGTAGAGCGT
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.0	26	38	-	10.6327	6.16e-05	0.306	AATATGAGGTAAG
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	26	38	-	10.6327	6.16e-05	0.306	AATATGAGGTAAG
SCRT1	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	85	99	-	7.59016	6.16e-05	0.827	CGGCCACAGGTAACT
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	64	+	11.9796	6.16e-05	0.182	AGCAGCTGTCC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	64	+	11.9796	6.16e-05	0.182	AGCAGCTGTCC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	35	+	8.37143	6.16e-05	0.113	TGCCCCCCGGGGCCT
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	35	+	8.37143	6.16e-05	0.113	TGCCCCCCGGGGCCT
ZIC3	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	24	38	-	8.37143	6.16e-05	0.113	TGCCCCCCGGGGCCT
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	38	52	-	8.37143	6.16e-05	0.113	CCGCCCCCGCTGCGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	63	77	+	8.37143	6.16e-05	0.113	CCGCCCCCGCTGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	91	+	8.37143	6.16e-05	0.113	TGCCCCCCGGGGCCT
ZIC3	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	80	94	-	8.37143	6.16e-05	0.113	TGCCCCCCGGGGCCT
Tcf21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	55	68	-	6.67105	6.16e-05	0.56	GTGACAGGTGTCAA
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	55	68	-	6.67105	6.16e-05	0.56	GTGACAGGTGTCAA
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	55	68	-	6.67105	6.16e-05	0.56	GTGACAGGTGTCAA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	17	27	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	17	27	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	32	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	32	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	32	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	32	+	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	11	21	-	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	11	21	-	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
SP3	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	83	93	-	11.1545	6.16e-05	0.0223	TCCCCGCCCAG
RELA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	12	21	-	10.2857	6.16e-05	0.228	GTGAATTCCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	12	21	-	10.2857	6.16e-05	0.228	GTGAATTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	12	21	-	10.2857	6.16e-05	0.228	GTGAATTCCC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	11	23	-	2.53061	6.16e-05	0.253	TGGGGGATCCGCG
HINFP	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	89	100	+	10.8939	6.16e-05	0.109	CCCCGTCCCCGT
HINFP	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	95	106	+	10.8939	6.16e-05	0.109	CCCCGTCCCCGT
Klf12	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	19	33	-	8.55738	6.16e-05	0.0655	CGCCCCGCCCCCACC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	1	12	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	17	28	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	18	29	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	24	35	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	28	39	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	28	39	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	62	73	+	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	67	78	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	67	78	-	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	80	91	+	11.3065	6.16e-05	0.281	CCGCCCCCCGCC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	+	11.7727	6.16e-05	0.281	TTCACGTGGC
Creb3l2	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	80	88	-	11.7753	6.17e-05	0.24	GACACGTCT
Creb3l2	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	27	35	+	11.7753	6.17e-05	0.24	GACACGTCT
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	42	59	-	4.96552	6.17e-05	0.293	TGGACACGCCCAGTGGCA
EGR4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	19	34	+	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	15	30	-	10.4364	6.17e-05	0.0395	GGCCGCCCGCGCTCCC
EGR4	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	31	46	+	10.4364	6.17e-05	0.0395	CTCCTCCCTCCCCTTT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	28	43	-	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	28	43	-	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	28	43	-	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	28	43	-	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	31	46	-	10.4364	6.17e-05	0.0395	CTCCGCCCCCCGGTTC
EGR4	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	56	71	+	10.4364	6.17e-05	0.0395	GGCCGCCCGCGCTCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	44	59	-	10.4364	6.17e-05	0.0395	GGCCGCCCGCGCTCCC
EGR4	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	72	87	+	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
EGR4	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	85	100	+	10.4364	6.17e-05	0.0395	GGCCGCCCGCGCTCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	81	96	-	10.4364	6.17e-05	0.0395	GCCCGCCCCCACGCCT
Bcl6	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	31	44	+	10.9677	6.17e-05	0.444	GGTCCTGGAAGACA
POU4F1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	31	44	-	11.0315	6.17e-05	1	ATGCATAATGAAAA
POU4F1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	71	84	+	11.0315	6.17e-05	1	ATGCATAATGAAAA
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	1	10	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	1	10	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	1	10	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	1	10	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	3	12	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	4	13	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	6	15	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	6	15	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	6	15	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	6	15	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	14	23	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	14	23	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	15	24	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	12	21	-	10.949	6.17e-05	0.0224	TGGGTGTGAC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	12	21	-	10.949	6.17e-05	0.0224	TGGGTGTGAC
Klf4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	23	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	24	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	26	35	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	17	26	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	17	26	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	26	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	26	35	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	19	28	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	28	37	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	29	38	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	29	38	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	29	38	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	33	42	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	33	42	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	33	42	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	33	42	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	38	47	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	41	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	41	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	41	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	34	43	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	34	43	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	34	43	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	34	43	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	47	56	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	48	57	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	50	59	+	10.949	6.17e-05	0.0224	TGGGTGTGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	50	59	+	10.949	6.17e-05	0.0224	TGGGTGTGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	51	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	51	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	51	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	54	63	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	59	68	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	60	69	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	60	69	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	60	69	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	60	69	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	61	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	63	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	63	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	63	72	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	63	72	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	63	72	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	63	72	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	64	73	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	67	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	68	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	72	81	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	75	84	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	75	84	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	75	84	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	75	84	+	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	91	100	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	92	101	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	102	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	102	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	103	112	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Klf4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	105	114	-	10.949	6.17e-05	0.0224	GGGGCGGGAC
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	12	28	-	11.3289	6.17e-05	1	AACCTGCTGTTTAGTGT
Rhox11	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	90	106	+	11.3289	6.17e-05	1	AACCTGCTGTTTAGTGT
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.2.0	37	51	-	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	37	51	-	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.1	37	51	-	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	37	51	-	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	37	51	-	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	61	75	+	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	61	75	+	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.2.0	61	75	+	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	61	75	+	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.1	61	75	+	10.5636	6.17e-05	0.315	GCCAAGTGAAAGCTG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	67	81	-	10.5636	6.17e-05	0.315	CTAAAGAGAAAGCAG
HOXD11	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	60	-	11.7465	6.17e-05	1	CTCGTAAAAG
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	31	45	+	7.60526	6.17e-05	0.251	CACATGACTCCGCCT
REST	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	33	53	-	5.37755	6.17e-05	0.219	CCCAGCGCTTTGGGGAGTGAC
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	16	36	+	5.37755	6.17e-05	0.219	GGGCGGTCCGTGGACAGGTGC
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	16	36	+	5.37755	6.17e-05	0.219	GGGCGGTCCGTGGACAGGTGC
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	16	36	+	5.37755	6.17e-05	0.219	GGGCGGTCCGTGGACAGGTGC
REST	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	16	36	+	5.37755	6.17e-05	0.219	GGGCGGTCCGTGGACAGGTGC
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	16	36	+	5.37755	6.17e-05	0.219	GGGCGGTCCGTGGACAGGTGC
REST	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	61	81	+	5.37755	6.17e-05	0.219	CCCAGCACATCAGAAAGGGAC
REST	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	62	82	+	5.37755	6.17e-05	0.219	CCCAGCGCTTTGGGGAGTGAC
REST	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	62	82	+	5.37755	6.17e-05	0.219	CCCAGCGCTTTGGGGAGTGAC
POU3F2	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	21	32	+	10.9677	6.17e-05	1	TTATGCAGATGT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	57	77	+	9.19355	6.17e-05	0.187	TTTTTTTTTTGTTTTTTTTTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	19	39	-	9.81633	6.17e-05	0.019	GGAGGGGGCGGGGCAGGTTGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	22	42	-	9.81633	6.17e-05	0.019	CGGGGATTGAATGGAGGGGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	26	46	-	9.81633	6.17e-05	0.019	GAGGGAGGGGACACATGGGAC
ZNF263	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	33	53	-	9.81633	6.17e-05	0.019	AGGTGCGGGGGCGGGGGTGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	64	84	-	9.81633	6.17e-05	0.019	GGAAGCGGGGGTGGGGTAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	68	88	-	9.81633	6.17e-05	0.019	TGAGGCTGTGGGGGAAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	68	88	-	9.81633	6.17e-05	0.019	TGAGGCTGTGGGGGAAGTAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	68	88	-	9.81633	6.17e-05	0.019	TGAGGCTGTGGGGGAAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	68	88	-	9.81633	6.17e-05	0.019	TGAGGCTGTGGGGGAAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	68	88	-	9.81633	6.17e-05	0.019	TGAGGCTGTGGGGGAAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	31	51	+	9.81633	6.17e-05	0.019	GGAAGCGGGGGTGGGGTAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	31	51	+	9.81633	6.17e-05	0.019	GGAAGCGGGGGTGGGGTAAAA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	31	51	+	9.81633	6.17e-05	0.019	GGAAGCGGGGGTGGGGTAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	31	51	+	9.81633	6.17e-05	0.019	GGAAGCGGGGGTGGGGTAAAA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	62	82	+	9.81633	6.17e-05	0.019	AGGTGCGGGGGCGGGGGTGGA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	10.5106	6.17e-05	0.0926	GCCGGATGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	10.5106	6.17e-05	0.0926	GCCGGATGTT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	46	60	-	10.8462	6.17e-05	0.175	GAAATAGCCAATCAT
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	46	60	-	10.8462	6.17e-05	0.175	GAAATAGCCAATCAT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	46	60	-	10.8462	6.17e-05	0.175	GAAATAGCCAATCAT
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	46	60	-	10.8462	6.17e-05	0.175	GAAATAGCCAATCAT
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	38	52	-	10.4848	6.17e-05	0.109	CTCTCACGCGCGCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	38	52	-	10.4848	6.17e-05	0.109	CTCTCACGCGCGCGC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	+	11.3269	6.17e-05	0.0758	TGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	+	11.3269	6.17e-05	0.0758	TGCCGGCGGCT
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	47	57	+	11.3269	6.17e-05	0.0758	AGCCACAGGCA
HSF2	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	3	15	+	9.23636	6.17e-05	1	TTCCGGAAGTTGC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	-	11.2909	6.17e-05	0.0702	AGCCCGAGGGT
Stat6	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	44	58	+	11.1379	6.17e-05	0.751	CGTTTCTATGGAAAC
Stat6	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	49	63	+	11.1379	6.17e-05	0.751	GTTTTATACAGAAAT
Stat6	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	57	71	-	11.1379	6.17e-05	0.751	CGTTTCTATGGAAAC
Arntl	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	1	10	-	11.3934	6.17e-05	0.259	AAGCACGTGC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	53	62	+	11.3934	6.17e-05	0.259	AAGCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	53	62	+	11.3934	6.17e-05	0.259	AAGCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	53	62	+	11.3934	6.17e-05	0.259	AAGCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	53	62	+	11.3934	6.17e-05	0.259	AAGCACGTGC
Arntl	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	105	114	+	11.3934	6.17e-05	0.259	AAGCACGTGC
SP1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	6	16	+	11.1538	6.17e-05	0.016	GCTCCTCCTAC
SP1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	6	16	-	11.1538	6.17e-05	0.016	TGCCCGCCCCA
SP1	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	16	26	+	11.1538	6.17e-05	0.016	CTCCCGCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	69	79	-	11.1538	6.17e-05	0.016	ACCCCACCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	69	79	-	11.1538	6.17e-05	0.016	ACCCCACCTCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	95	105	+	11.1538	6.17e-05	0.016	ACCCCACCTCT
SP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	90	100	-	11.1538	6.17e-05	0.016	CTCCCGCCTCG
SP1	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	90	100	-	11.1538	6.17e-05	0.016	CTCCCGCCTCG
EGR3	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	13	27	+	6.67241	6.17e-05	0.0403	CAACACCCACTCCCT
EGR3	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	21	35	-	6.67241	6.17e-05	0.0403	ACCCGGCCCCGCCCT
EGR3	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	37	51	-	6.67241	6.17e-05	0.0403	CGCCTCCCTCGCACC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	61	75	-	6.67241	6.17e-05	0.0403	CAACACCCACTCCCT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	61	75	-	6.67241	6.17e-05	0.0403	CAACACCCACTCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	60	72	-	10.9672	6.18e-05	0.359	ACGCCTGCCACCT
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	83	91	+	11.8727	6.18e-05	0.428	CCATACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	83	91	+	11.8727	6.18e-05	0.428	CCATACCTG
TP53	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	12	29	-	6.79592	6.18e-05	0.979	TACAAGTCTTAGCCAGTT
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	28	41	+	8.90909	6.18e-05	0.391	AGAGTTTAAGGTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	28	41	+	8.90909	6.18e-05	0.391	AGAGTTTAAGGTCA
Nr2f6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	48	61	+	8.90909	6.18e-05	0.391	AGAGTTTAAGGTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	48	61	+	8.90909	6.18e-05	0.391	AGAGTTTAAGGTCA
Mecom	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	41	54	+	8.73034	6.18e-05	1	CAGATAAGAGAATA
Mecom	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	41	54	+	8.73034	6.18e-05	1	CAGATAAGAGAATA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	25	38	+	9.03448	6.18e-05	0.0345	TCCTCCGCCCACTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	25	38	+	9.03448	6.18e-05	0.0345	TCCTCCGCCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	25	38	+	9.03448	6.18e-05	0.0345	TCCTCCGCCCACTC
KLF14	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	33	46	+	9.03448	6.18e-05	0.0345	GTCCACGCTCCCTT
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	79	88	-	11.4808	6.18e-05	0.105	CGTGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	79	88	-	11.4808	6.18e-05	0.105	CGTGGAAGTG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	39	-	9.76364	6.18e-05	0.254	ATCACGTCAC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	78	91	+	11	6.18e-05	0.0599	GGAGGAGCGGCCTG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	73	87	-	9.58571	6.18e-05	0.122	GGCGGTCTGGGGTCA
Dmbx1	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	42	58	+	11.5263	6.18e-05	1	ATGAGGGGATTACTTAA
Dmbx1	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	53	69	-	11.5263	6.18e-05	1	ATGAGGGGATTACTTAA
Foxk1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	60	76	-	10.8312	6.18e-05	1	GAGATGTAAACAGGAAC
ESR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	42	56	-	10.8846	6.18e-05	0.449	AGGTCACGTGGCCAG
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	42	56	-	10.8846	6.18e-05	0.449	AGGTCACGTGGCCAG
ESR2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	59	73	+	10.8846	6.18e-05	0.449	AGGTCACGTGGCCAG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	57	71	-	10.982	6.18e-05	0.185	GTGGGTTAGAGTCCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	57	71	-	10.982	6.18e-05	0.185	GTGGGTTAGAGTCCA
NKX3-2	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	13	21	-	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	101	109	-	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	104	112	-	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	104	112	-	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	104	112	-	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	104	112	-	11.7115	6.18e-05	1	GCCACTTAC
Nkx3-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	75	83	+	11.8182	6.18e-05	1	AGCACTTAG
Nkx3-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	75	83	+	11.8182	6.18e-05	1	AGCACTTAG
Nkx3-1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	75	83	+	11.8182	6.18e-05	1	AGCACTTAG
NKX3-2	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	3	11	+	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	6	14	+	11.7115	6.18e-05	1	GCCACTTAC
NKX3-2	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	35	43	+	11.7115	6.18e-05	1	GCCACTTAC
FOS	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	+	11.5532	6.18e-05	0.238	ACTGACTCAGC
FOS	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	-	11.5532	6.18e-05	0.238	ACTGACTCAGC
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	47	63	+	3.5082	6.18e-05	0.563	AGGTCAACTATGGGCCT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	11.7308	6.18e-05	0.28	ATCACGTGTC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	11.7308	6.18e-05	0.28	ATCACGTGTC
GLIS2	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	11	24	-	8.42623	6.18e-05	0.185	CGCCCCCCGCGCGT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	39	52	+	8.42623	6.18e-05	0.185	CGCCCCCAGCGAGT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	39	52	+	8.42623	6.18e-05	0.185	CGCCCCCAGCGAGT
GLIS2	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	43	56	-	8.42623	6.18e-05	0.185	CGCCCCCCGCGCGT
GLIS2	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	59	72	+	8.42623	6.18e-05	0.185	CGCCCCCCGCGCGT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	60	73	+	8.42623	6.18e-05	0.185	CCCCCCCCGCCGCT
GLIS2	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	91	104	+	8.42623	6.18e-05	0.185	CGCCCCCCGCGCGT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	14	26	-	10.2787	6.18e-05	0.0644	CCCCCTGGCGGCG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	37	-	11.4909	6.18e-05	0.0627	TAACTTCCGGA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	37	-	11.4909	6.18e-05	0.0627	TAACTTCCGGA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	6	16	+	11.4909	6.18e-05	0.0627	CGGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	28	38	+	11.4909	6.18e-05	0.0627	TCATTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	28	38	+	11.4909	6.18e-05	0.0627	TCATTTCCTGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	44	60	+	4.14545	6.18e-05	0.0294	AACACCCCTCCCCTGTT
SP4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	38	54	-	4.14545	6.18e-05	0.0294	GCGCCCCCGCCCCCGGA
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	38	54	-	4.14545	6.18e-05	0.0294	CTCGACCCTCCCCTTGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	38	54	-	4.14545	6.18e-05	0.0294	CTCGACCCTCCCCTTGA
SP4	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	61	77	+	4.14545	6.18e-05	0.0294	CTCGACCCTCCCCTTGA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	47	63	-	4.14545	6.18e-05	0.0294	CTGGCCCCACCCCAGCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	47	63	-	4.14545	6.18e-05	0.0294	CTGGCCCCACCCCAGCG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	47	63	-	4.14545	6.18e-05	0.0294	CTGGCCCCACCCCAGCG
ELF1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	41	52	+	9.29091	6.18e-05	0.115	GTCCAGGAAGTT
ELF1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	45	56	+	9.29091	6.18e-05	0.115	TCGCCGGAAGCG
ELF1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	70	-	9.29091	6.18e-05	0.115	TCGCCGGAAGCG
ELF1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	63	74	-	9.29091	6.18e-05	0.115	GTCCAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	94	105	-	9.29091	6.18e-05	0.115	GTCCAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	94	105	-	9.29091	6.18e-05	0.115	GTCCAGGAAGTT
DUX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.1.0	61	71	-	10.9149	6.18e-05	1	GAATTGAATCA
DUX4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.1	61	71	-	10.9149	6.18e-05	1	GAATTGAATCA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	67	79	+	8.51515	6.19e-05	0.264	CAGGGATTTCCCA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	58	70	-	8.51515	6.19e-05	0.264	AGGGGAAAGCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	68	80	-	8.51515	6.19e-05	0.264	CAGGGATTTCCCA
ZNF143	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	40	55	+	1.82759	6.19e-05	0.358	CTCCCAGGAAACAATA
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	29	39	+	11.4545	6.19e-05	0.0551	CGCCTCCGGGT
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	+	11.4545	6.19e-05	0.0551	TGCCCGAGGGA
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	76	86	-	11.4545	6.19e-05	0.0551	CGCCTCCGGGT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	97	+	11.4545	6.19e-05	0.0551	AGCCGCGGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	-	11.4545	6.19e-05	0.0551	TGCCCGAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	-	11.4545	6.19e-05	0.0551	TGCCCGAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	-	11.4545	6.19e-05	0.0551	TGCCCGAGGGA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	-	11.4545	6.19e-05	0.0551	TGCCCGAGGGA
KLF16	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	3	13	+	10.6724	6.19e-05	0.0216	GCCCCGCCCTT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	21	31	+	10.6724	6.19e-05	0.0216	GCCCCGCCCTT
KLF16	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	29	39	-	10.6724	6.19e-05	0.0216	GCCCCGCCCTT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	99	109	-	10.6724	6.19e-05	0.0216	GCCCCGCCCTT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	99	109	-	10.6724	6.19e-05	0.0216	GCCCCGCCCTT
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	81	94	+	5.81633	6.19e-05	0.365	TGGCAAAGTGCCCT
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	2	18	-	-5	6.19e-05	1	CGAGCTCAAAGCCCAGC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	2	18	-	-5	6.19e-05	1	CGAGCTCAAAGCCCAGC
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	52	68	+	5.89091	6.19e-05	0.619	GGTCACCCTCGGCCGCC
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	52	68	+	5.89091	6.19e-05	0.619	GGTCACCCTCGGCCGCC
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	7	19	-	10.8621	6.19e-05	1	TTTATTTTCATGC
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	7	19	-	10.8621	6.19e-05	1	TTTATTTTCATGC
POU2F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	7	19	-	10.8621	6.19e-05	1	TTTATTTTCATGC
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	7	19	-	10.8621	6.19e-05	1	TTTATTTTCATGC
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	7	19	-	10.8621	6.19e-05	1	TTTATTTTCATGC
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	84	97	+	6.65789	6.19e-05	0.56	CTACCAGCTGCCCT
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	84	97	+	6.65789	6.19e-05	0.56	CTACCAGCTGCCCT
HLTF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:43011170..43011284,+__530.1.0.0	74	83	+	8.7439	6.19e-05	1	GTCCTTATGC
HLTF	FLIPPED__Lincrna.flip.antisense__chr22:43011170..43011284,-__2685.1.0.0	32	41	-	8.7439	6.19e-05	1	GTCCTTATGC
LIN54	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	21	29	+	11.6667	6.19e-05	1	ATTTGAATG
LIN54	WILDTYPE__Antisense.noflip.NA__chr12:93965161..93965275,-__258.1.0.0	29	37	+	11.6667	6.19e-05	1	ATTTGAATG
LIN54	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	49	57	+	11.6667	6.19e-05	1	ATTTAAATC
LIN54	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	50	58	+	11.6667	6.19e-05	1	ATTTGAATG
LIN54	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	57	65	-	11.6667	6.19e-05	1	ATTTGAATG
LIN54	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	65	73	+	11.6667	6.19e-05	1	ATTTAAATC
LIN54	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	83	91	-	11.6667	6.19e-05	1	ATTTAAATC
LIN54	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	83	91	-	11.6667	6.19e-05	1	ATTTAAATC
LIN54	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	83	91	-	11.6667	6.19e-05	1	ATTTAAATC
LIN54	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	83	91	-	11.6667	6.19e-05	1	ATTTAAATC
Gata1	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	49	59	+	11.6122	6.19e-05	1	TGCTTATCAGC
ZIC1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	84	97	-	6.61702	6.19e-05	0.0995	GCCTCCCCACTGCT
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	18	33	+	-8.86538	6.19e-05	0.329	CGAGCCCTCACGAGGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	18	33	+	-8.86538	6.19e-05	0.329	CGAGCCCTCACGAGGC
GLIS1	WILDTYPE__Enhancer.flip.sense__chr10:94351440..94351554,-__2142.1.0.0	15	30	-	-8.86538	6.19e-05	0.329	CCACCGCCCGCTGCGC
GLIS1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	51	66	-	-8.86538	6.19e-05	0.329	CGACCCCGCACTCTGG
GLIS1	FLIPPED__Enhancer.flip.antisense__chr10:94351440..94351554,+__2564.1.0.0	85	100	+	-8.86538	6.19e-05	0.329	CCACCGCCCGCTGCGC
TBX19	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	93	112	-	9.43902	6.19e-05	1	GTGCGCACGCGCGTGCGAAC
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	3	22	+	9.43902	6.19e-05	1	GTGCGCACGCGCGTGCGAAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	11	20	+	8.32692	6.19e-05	0.192	GGCCCGTGAC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	+	10.1379	6.19e-05	0.0554	AGCCCTCTGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	+	10.1379	6.19e-05	0.0554	AGCCCTCTGGGGC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	12	22	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	12	22	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	42	52	+	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	32	42	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	32	42	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	46	56	+	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
EGR2	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	44	54	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	52	62	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	52	62	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	55	65	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	55	65	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	55	65	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	55	65	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	59	69	-	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	63	73	-	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	91	101	+	9.7069	6.19e-05	0.0825	GCGCCCCCGCC
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	85	95	-	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	85	95	-	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	85	95	-	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	85	95	-	9.7069	6.19e-05	0.0825	TCGCCCGCGCG
REST	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	76	96	-	5.36735	6.19e-05	0.219	GTCAGGGCCAGGGGCGGGGCT
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	19	39	+	5.36735	6.19e-05	0.219	GTCAGGGCCAGGGGCGGGGCT
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	19	39	+	5.36735	6.19e-05	0.219	GTCAGGGCCAGGGGCGGGGCT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	87	99	-	2.5102	6.19e-05	0.253	AGGTGAATCCCGA
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	87	99	-	2.5102	6.19e-05	0.253	AGGTGAATCCCGA
SP2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	17	31	-	10.6034	6.19e-05	0.014	CCACCGCCTTCTTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	34	48	-	10.6034	6.19e-05	0.014	CCTCCGCCCACAGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	66	80	+	10.6034	6.19e-05	0.014	GGCCCTCCCATTTCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	87	+	10.6034	6.19e-05	0.014	CCTCCGCCCACAGGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	70	84	-	10.6034	6.19e-05	0.014	TCTCCACCCACTGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	70	84	-	10.6034	6.19e-05	0.014	TCTCCACCCACTGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	70	84	-	10.6034	6.19e-05	0.014	TCTCCACCCACTGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	70	84	-	10.6034	6.19e-05	0.014	TCTCCACCCACTGCC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	84	98	+	10.6034	6.19e-05	0.014	CCACCGCCTTCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	84	98	+	10.6034	6.19e-05	0.014	CCACCGCCTTCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	70	84	-	10.6034	6.19e-05	0.014	CTTCCGCCCACTGTG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	71	85	-	8.88525	6.19e-05	0.463	ATGACTCATGAGGAC
TBP	WILDTYPE__mrna.noflip.NA__chr17:10452902..10453016,-__1036.1.0.0	10	24	+	11.2222	6.19e-05	0.567	ATATAAAAGAGCCCT
NKX2-3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	89	98	-	11.7115	6.19e-05	1	ACCACTTATG
LBX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	10.4237	6.19e-05	1	TCTAATTAGG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	79	90	-	10.5517	6.2e-05	0.33	GCGCCCACAGTC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	79	90	-	10.5517	6.2e-05	0.33	GCGCCCACAGTC
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	79	90	-	10.5517	6.2e-05	0.33	GCGCCCACAGTC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	25	35	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	27	37	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	36	46	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	44	54	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	59	69	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	59	69	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	59	69	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	59	69	+	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	60	70	-	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
E2F4	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	78	88	-	11.1552	6.2e-05	0.0483	AGGCGGGGAGG
PAX5	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	8	26	+	10.6935	6.2e-05	0.149	CCGCGCGGGGGAGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	44	62	+	10.6935	6.2e-05	0.149	GAGGCCGGCCAGTCGTGAC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	44	62	+	10.6935	6.2e-05	0.149	GAGGCCGGCCAGTCGTGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	58	76	+	10.6935	6.2e-05	0.149	GAAAGAGGCCAGGCAGGGC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	58	76	+	10.6935	6.2e-05	0.149	GAAAGAGGCCAGGCAGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	58	76	+	10.6935	6.2e-05	0.149	GAAAGAGGCCAGGCAGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	53	71	-	10.6935	6.2e-05	0.149	GAGGCCGGCCAGTCGTGAC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	50	63	+	11.0141	6.2e-05	0.263	AAGAAGAGGAAGAG
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	50	63	+	11.0141	6.2e-05	0.263	AAGAAGAGGAAGAG
KLF13	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	42	59	+	4.94828	6.2e-05	0.293	GGACCACATCCCTCTCGG
PPARG	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	39	58	+	7.31111	6.2e-05	1	CAACGTCATATGACCCCACT
PPARG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	24	43	-	7.31111	6.2e-05	1	CAACGTCATATGACCCCACT
PPARG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	24	43	-	7.31111	6.2e-05	1	CAACGTCATATGACCCCACT
Barhl1	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	33	42	-	9.60377	6.2e-05	1	CGTAATTGCC
Barhl1	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	73	82	+	9.60377	6.2e-05	1	CGTAATTGCC
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	14	25	-	3.39344	6.2e-05	0.598	TGCCATGTGTGA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	14	25	-	3.39344	6.2e-05	0.598	TGCCATGTGTGA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	38	49	+	3.39344	6.2e-05	0.598	TGCCATGTGTGA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	38	49	+	3.39344	6.2e-05	0.598	TGCCATGTGTGA
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	43	57	-	7.59211	6.2e-05	0.251	CTGGTGACTCCGCCT
RXRB	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	17	30	+	1.05455	6.2e-05	0.525	CAGGCTAGAGGTCA
RXRB	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	75	-	1.05455	6.2e-05	0.525	CAGGCTAGAGGTCA
CTCF	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	30	48	+	8.90164	6.2e-05	0.122	AGACCTGCGGGTGGCCGCG
CTCF	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	67	85	-	8.90164	6.2e-05	0.122	AGACCTGCGGGTGGCCGCG
LHX6	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	-	11.5455	6.2e-05	1	GTTAATTAAT
HES7	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	4	15	+	3.65517	6.2e-05	0.192	TGGCGCGTCCCA
HES7	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	100	111	-	3.65517	6.2e-05	0.192	TGGCGCGTCCCA
RFX5	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	94	109	+	6.93103	6.2e-05	0.323	TGTCGCCATGGCCCCG
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	87	97	+	11.0303	6.2e-05	0.0469	GATCACGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	87	97	+	11.0303	6.2e-05	0.0469	GATCACGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	87	97	+	11.0303	6.2e-05	0.0469	ACGCACACCCA
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	10.1724	6.2e-05	0.249	GGCACGTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	10.1724	6.2e-05	0.249	GGCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	11.0345	6.2e-05	0.199	GACACCTGTC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	11.0345	6.2e-05	0.199	GACACCTGTC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	11.0345	6.2e-05	0.199	GACACCTGTC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	18	32	-	8.54098	6.2e-05	0.0657	GCCCACACCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	18	32	-	8.54098	6.2e-05	0.0657	GCCCACACCCCGTCC
ETV2	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	85	95	-	10.6393	6.2e-05	0.174	TACAGGAAGCA
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	56	69	-	6.54878	6.2e-05	0.5	GCTGCGCGCGGCGC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	56	69	-	6.54878	6.2e-05	0.5	GCTGCGCGCGGCGC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	56	69	-	6.54878	6.2e-05	0.5	GCTGCGCGCGGCGC
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	56	69	-	6.54878	6.2e-05	0.5	GCTGCGCGCGGCGC
ELF4	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	25	36	+	9.31148	6.2e-05	0.108	AGACCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	46	57	+	9.31148	6.2e-05	0.108	AGACCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	46	57	+	9.31148	6.2e-05	0.108	AGACCGGAAGCG
ELF4	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	58	69	-	9.31148	6.2e-05	0.108	AGACCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	79	90	-	9.31148	6.2e-05	0.108	AGACCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	79	90	-	9.31148	6.2e-05	0.108	AGACCGGAAGCG
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	5	19	+	10.8298	6.2e-05	0.32	CCTGGTGACGTAACC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	5	19	+	10.8298	6.2e-05	0.32	CCTGGTGACGTAACC
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	5	19	+	10.8298	6.2e-05	0.32	CCTGGTGACGTAACC
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	5	19	+	10.8298	6.2e-05	0.32	CCTGGTGACGTAACC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	12	26	+	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	12	26	+	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	32	46	+	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	32	46	+	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	33	47	-	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	33	47	-	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
JUND(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	89	103	-	10.8298	6.2e-05	0.32	TTCCGTGACGTCACA
E2F4	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	20	30	+	11.1379	6.2e-05	0.0483	GCGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	37	47	-	11.1379	6.2e-05	0.0483	GCGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	59	69	-	11.1379	6.2e-05	0.0483	GCGCGGGGGGG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	+	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	+	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	-	10.5082	6.2e-05	0.0586	ACCCCCTGAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	-	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	-	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	-	10.5082	6.2e-05	0.0586	ACCCCGGGAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	-	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	-	10.5082	6.2e-05	0.0586	AGCCGCGCAGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	+	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	+	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	+	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	96	+	11.3636	6.2e-05	0.0893	CGCCCCAGGGAA
TFAP2B	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	19	30	-	11.3636	6.2e-05	0.0893	CGCCCCAGGGAA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	-	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	-	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	-	11.3636	6.2e-05	0.0893	CCCCTGCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	-	11.3636	6.2e-05	0.0893	CCCCTGCGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	-	11.3636	6.2e-05	0.0893	CGCCTCTGGGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	67	80	+	10.4615	6.2e-05	0.024	GGACCGCCCACTTC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	99	109	-	11.3077	6.21e-05	0.0758	TGCCCCAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	99	109	-	11.3077	6.21e-05	0.0758	TGCCCCAAGCT
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	83	93	+	10.4909	6.21e-05	0.266	ACCAGGAAGTG
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	65	75	-	10.4909	6.21e-05	0.266	ACCAGGAAGTG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	95	105	-	11.9592	6.21e-05	0.182	CGCAGCTGCCA
Tcf12	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	20	+	11.9592	6.21e-05	0.182	CGCAGCTGCCA
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	101	+	11.9592	6.21e-05	0.182	GGCAGGTGGTG
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	101	+	11.9592	6.21e-05	0.182	GGCAGGTGGTG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	101	+	11.9592	6.21e-05	0.182	GGCAGGTGGTG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	93	105	-	8.51724	6.21e-05	0.167	CACCCGGAAAAGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	93	105	-	8.51724	6.21e-05	0.167	CACCCGGAAAAGG
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	-	11.4	6.21e-05	0.0576	TCCCGCGGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	17	28	-	11.4	6.21e-05	0.0576	CCCCGCCGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	-	11.4	6.21e-05	0.0576	TCCCGCGGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	+	11.4	6.21e-05	0.0576	AGCCGCCGGGCG
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	+	11.4	6.21e-05	0.0576	TCCCGCGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	87	98	+	11.4	6.21e-05	0.0576	CCCCGCCGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	+	11.4	6.21e-05	0.0576	TCCCGCGGGGCG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	20	38	-	10.7742	6.21e-05	0.674	CGACCACCGATGACCTCAC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	20	38	-	10.7742	6.21e-05	0.674	CGACCACCGATGACCTCAC
Nr1h3::Rxra	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	77	95	+	10.7742	6.21e-05	0.674	CGACCACCGATGACCTCAC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	20	-	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	20	-	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	20	-	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	20	-	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	44	55	+	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	71	-	9.27273	6.21e-05	0.115	ATACAGGAAGTC
ELF1	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	95	106	+	9.27273	6.21e-05	0.115	ATACAGGAAGTC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	16	27	-	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	39	+	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	39	+	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	31	42	-	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	31	42	-	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	47	58	+	10.9737	6.21e-05	0.0319	AACCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	47	58	+	10.9737	6.21e-05	0.0319	AACCCGCCTCCC
SP8	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	38	49	-	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
SP8	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	68	+	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
SP8	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	47	58	-	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	84	+	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	93	+	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
SP8	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	76	87	-	10.9737	6.21e-05	0.0319	GCTCCGCCCCTT
SP8	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	99	+	10.9737	6.21e-05	0.0319	GCTCCTCCCCCT
GLIS1	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	2	17	+	-8.88462	6.21e-05	0.329	CCACCCGCCACGGCAG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	98	113	-	-8.88462	6.21e-05	0.329	CCACCCGCCACGGCAG
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	98	113	-	-8.88462	6.21e-05	0.329	CCACCCGCCACGGCAG
RELA	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	25	34	-	10.2347	6.21e-05	0.228	GGGGGATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	83	92	-	10.2347	6.21e-05	0.228	GGGGGATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	83	92	-	10.2347	6.21e-05	0.228	GGGGGATCCC
CDX1	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	81	89	+	11.1698	6.21e-05	1	GCCATAAAT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	20	30	-	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	20	30	-	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	20	30	-	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	20	30	-	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	47	57	-	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	58	68	+	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	58	68	+	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	58	68	+	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	85	95	+	11.4727	6.21e-05	0.0627	GGACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	99	109	+	11.4727	6.21e-05	0.0627	CTGCTTCCGCG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	99	109	+	11.4727	6.21e-05	0.0627	CTGCTTCCGCG
SP4	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	5	21	-	4.12727	6.21e-05	0.0295	CAGGACCCGGCCCCGGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	13	29	-	4.12727	6.21e-05	0.0295	GGGGACACACCCACCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	13	29	-	4.12727	6.21e-05	0.0295	GGGGACACACCCACCTC
SP4	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	94	110	+	4.12727	6.21e-05	0.0295	CAGGACCCGGCCCCGGT
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	99	112	-	5.87755	6.21e-05	0.0723	GAGTGGTTCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.1.0	80	93	+	5.87755	6.21e-05	0.0723	GAGGCTGTAGGTGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	80	93	+	5.87755	6.21e-05	0.0723	GAGGCTGTAGGTGG
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	90	110	-	5.35714	6.21e-05	0.219	GTGAGCACGCAGGAGACCACA
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	90	110	-	5.35714	6.21e-05	0.219	GTGAGCACGCAGGAGACCACA
Crem	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	33	42	-	12.0492	6.22e-05	0.281	GGTGACGTAG
Crem	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	86	95	+	12.0492	6.22e-05	0.281	GGTGACGTAG
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	36	47	-	11.2903	6.22e-05	0.281	GTGACCCCCGTC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	51	62	+	11.2903	6.22e-05	0.281	TCACCCACCGCC
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	68	79	+	11.2903	6.22e-05	0.281	GTGACCCCCGTC
HSF2	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	85	97	+	9.21818	6.22e-05	1	TTCTAGCACATGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	23	36	-	9.01724	6.22e-05	0.0347	CGTCCCGCCCACGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	14	31	+	-13.3684	6.22e-05	0.0524	GGAGGAAGGGGCGGCGAG
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	84	98	+	10.4697	6.22e-05	0.109	CGCTCGCGAAACCCG
Rarb	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	11	26	+	-3.82759	6.22e-05	1	GGAGGGGACGGGGTCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	75	85	+	11.1463	6.22e-05	0.0224	TCCCCACCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	75	85	+	11.1463	6.22e-05	0.0224	TCCCCACCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	75	85	+	11.1463	6.22e-05	0.0224	TCCCCACCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	1	11	-	11.1463	6.22e-05	0.0224	TCCCCACCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	3	13	-	11.1463	6.22e-05	0.0224	TCCCCACCCCT
Zfx	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	33	46	-	10.9848	6.22e-05	0.0599	CGGGGACCGGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	69	82	+	10.9848	6.22e-05	0.0599	CGGGGACCGGCCTC
Bcl6	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	9	22	+	10.9516	6.22e-05	0.444	TTTCCTAGAACGGC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	57	-	11.3163	6.22e-05	0.0866	CCCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	57	-	11.3163	6.22e-05	0.0866	CCCCTGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	57	-	11.3163	6.22e-05	0.0866	CCCCTGGGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	58	69	+	11.3163	6.22e-05	0.0866	CCCCTGGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	87	98	-	11.3163	6.22e-05	0.0866	GGCCCGGGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	92	103	-	11.3163	6.22e-05	0.0866	TGCCTCCAGGTA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	92	103	-	11.3163	6.22e-05	0.0866	TGCCTCCAGGTA
RREB1	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	49	68	-	3.99083	6.22e-05	0.0626	ACCCAAGCCAACCCGAGAAA
RREB1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	9	28	+	3.99083	6.22e-05	0.0626	CCACTCCCCTAACCCCACCC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	91	110	+	3.99083	6.22e-05	0.0626	TCCCCCCTCTCCCACCCCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	91	110	+	3.99083	6.22e-05	0.0626	TCCCCCCTCTCCCACCCCCT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	5	18	-	11.3846	6.22e-05	0.223	TCATGCTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	5	18	-	11.3846	6.22e-05	0.223	TCATGCTGACTCAT
TFAP2A	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	30	40	+	11.4364	6.22e-05	0.0551	CGCCGCGGGCC
TFAP2A	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	36	46	+	11.4364	6.22e-05	0.0551	AGCCGAAGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	69	79	-	11.4364	6.22e-05	0.0551	AGCCGAAGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	75	85	-	11.4364	6.22e-05	0.0551	CGCCGCGGGCC
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	10	19	-	11.303	6.22e-05	0.179	TTAGGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	55	64	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	55	64	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	62	71	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	62	71	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	68	77	-	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	68	77	-	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	72	81	-	11.303	6.22e-05	0.179	TTAGGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	101	110	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	101	110	+	11.303	6.22e-05	0.179	GAAGGGGGGA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	97	106	-	11.303	6.22e-05	0.179	CGAGGGGTGA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	43	56	-	3.32927	6.22e-05	0.484	TGGGTCGGAGGTTA
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	43	56	-	3.32927	6.22e-05	0.484	TGGGTCGGAGGTTA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	43	56	-	3.32927	6.22e-05	0.484	TGGGTCGGAGGTTA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	43	56	-	3.32927	6.22e-05	0.484	TGGGTCGGAGGTTA
Spz1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	47	57	-	11.3909	6.22e-05	0.77	GGGGTAGAAGC
E2F1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	63	74	+	11.1475	6.22e-05	0.425	GTAGGCGCCCTT
EBF1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	2	15	-	9.34426	6.22e-05	0.365	GGACCCCCGGGACT
EBF1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	40	53	+	9.34426	6.22e-05	0.365	GGACCCCCGGGACT
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	62	75	-	9.34426	6.22e-05	0.365	GGACCCCCGGGACT
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	62	75	-	9.34426	6.22e-05	0.365	GGACCCCCGGGACT
Hes2	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	7	19	-	10.8254	6.22e-05	0.544	CCTCCACACGTGA
Hes2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	25	37	-	10.8254	6.22e-05	0.544	CCTCCACACGTGA
Hes2	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	39	51	-	10.8254	6.22e-05	0.544	CCTCCACACGTGA
Hes2	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	64	76	+	10.8254	6.22e-05	0.544	CCTCCACACGTGA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	88	102	+	7.57895	6.22e-05	0.251	CCCGCGACTCAGCCA
SOX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	51	65	+	1.81633	6.22e-05	1	AACAACCCCAGTGTT
SOX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	51	65	+	1.81633	6.22e-05	1	AACAACCCCAGTGTT
E2F8	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	98	109	-	5.23171	6.22e-05	0.631	CCTCCCGCGGAA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	7	22	+	10.4182	6.23e-05	0.0396	AGCCGCTCCCGCATTA
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	7	22	+	10.4182	6.23e-05	0.0396	AGCCGCTCCCGCATTA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	5	20	-	10.4182	6.23e-05	0.0396	CCCCGGCCCCGCCCTG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	17	32	-	10.4182	6.23e-05	0.0396	CAACCCCCACCCGCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	56	71	+	10.4182	6.23e-05	0.0396	CCCCGGCCCCGCCCTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	97	112	+	10.4182	6.23e-05	0.0396	CCCCGGCCCCGCCCTG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	27	37	+	10.2909	6.23e-05	0.0199	CCACGTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	25	35	-	10.2909	6.23e-05	0.0199	CAGCCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	25	35	-	10.2909	6.23e-05	0.0199	CAGCCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	28	38	-	10.2909	6.23e-05	0.0199	CCACGTGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	57	67	+	10.2909	6.23e-05	0.0199	GCGCCGGCGAG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	-	10.2623	6.23e-05	0.0644	CGCCCACAAGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	-	10.2623	6.23e-05	0.0644	CGCCCACAAGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	+	10.2623	6.23e-05	0.0644	CGCCCACAAGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	+	10.2623	6.23e-05	0.0644	CGCCCACAAGGCT
PRDM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	11	25	-	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	11	25	-	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	38	52	+	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
PRDM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	38	52	+	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
PRDM1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	63	77	-	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
PRDM1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	90	104	+	10.5455	6.23e-05	0.315	AGATAGCGAAAGGGG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	13	30	+	4.93103	6.23e-05	0.293	CGGCCACACCCTCTTCCG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	13	30	+	4.93103	6.23e-05	0.293	CGGCCACACCCTCTTCCG
MTF1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	34	47	+	6.53659	6.23e-05	0.5	TGTGCAATCGGCCT
MTF1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	68	81	-	6.53659	6.23e-05	0.5	TGTGCAATCGGCCT
LEF1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	41	55	+	8.90323	6.23e-05	1	GCACATGAAAGGGCT
LEF1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	35	49	-	8.90323	6.23e-05	1	GCACATGAAAGGGCT
LEF1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	66	80	+	8.90323	6.23e-05	1	GCACATGAAAGGGCT
LEF1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	60	74	-	8.90323	6.23e-05	1	GCACATGAAAGGGCT
MAX::MYC	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	24	34	-	10.6633	6.23e-05	0.325	AAACATGTGGT
Myog	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	39	49	-	12	6.23e-05	0.159	GACAGGTGGGA
Myog	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	76	+	12	6.23e-05	0.159	GACAGGTGGGA
Hand1::Tcf3	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	57	66	+	11.4157	6.23e-05	0.93	GTTCTGGAAT
PLAG1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	6	19	-	5.86735	6.23e-05	0.0723	GGGGAGATCTGGGG
INSM1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	40	51	-	10.1224	6.23e-05	0.177	TTTCAGCGGGAG
HES5	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	55	66	-	3.05172	6.23e-05	0.298	CAACACATGCCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.5577	6.23e-05	0.137	GCCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.5577	6.23e-05	0.137	GCCGGAAGCT
Gabpa	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	27	37	+	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	37	47	+	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	37	47	+	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
Gabpa	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	68	78	-	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	77	87	-	11.0984	6.23e-05	0.0637	GAGGAAGTGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	77	87	-	11.0984	6.23e-05	0.0637	GAGGAAGTGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	78	88	-	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	78	88	-	11.0984	6.23e-05	0.0637	CAGGAAGTTGC
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	18	31	-	8.78788	6.23e-05	0.303	GGGACACGTGACCG
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	38	51	-	8.78788	6.23e-05	0.303	GGGACACGTGACCG
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	64	77	+	8.78788	6.23e-05	0.303	GGGACACGTGACCG
CREB3L1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	84	97	+	8.78788	6.23e-05	0.303	GGGACACGTGACCG
HNF4G	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	16	-	10.9038	6.23e-05	0.335	AGGGGTGAAGGGCCA
HNF4G	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	48	62	+	10.9038	6.23e-05	0.335	AGGGGTGAAGGGCCA
HNF4G	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	67	-	10.9038	6.23e-05	0.335	AGGGGTGAAGGGCCA
HNF4G	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	99	113	+	10.9038	6.23e-05	0.335	AGGGGTGAAGGGCCA
Znf423	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	17	31	-	6.16854	6.23e-05	0.314	CCACCCCAGTGTGCA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	13	26	-	11.4655	6.23e-05	0.317	GTGCCAAGAAGTGC
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	13	26	-	11.4655	6.23e-05	0.317	GTGCCAAGAAGTGC
Stat4	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	89	102	+	11.4655	6.23e-05	0.317	GTGCCAAGAAGTGC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	83	93	+	11.2727	6.23e-05	0.0702	CCCCTGCGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	26	36	-	11.2727	6.23e-05	0.0702	AGCCTCAGGGC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	62	-	11.2727	6.23e-05	0.0702	CCCCCCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	62	-	11.2727	6.23e-05	0.0702	CCCCCCCGGCA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	-	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	-	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	-	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	-	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	19	29	-	10.7872	6.23e-05	0.222	TCTGACTCACA
JUND	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	+	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	-	10.7872	6.23e-05	0.222	CCTGACTCATG
JUND	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	+	10.7872	6.23e-05	0.222	CCTGACTCATG
MLX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	24	33	+	10.2714	6.23e-05	0.289	ATCACGTGTA
Creb5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	24	35	+	9.01818	6.23e-05	0.226	AGTGACGTCAGG
Creb5	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	58	69	+	9.01818	6.23e-05	0.226	AGTGACGTCAGG
Creb5	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	57	-	9.01818	6.23e-05	0.226	AGTGACGTCAGG
Creb5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	91	-	9.01818	6.23e-05	0.226	AGTGACGTCAGG
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	79	96	-	-1.55172	6.23e-05	0.935	AACAAGACAGTGCAAGTG
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	79	96	-	-1.55172	6.23e-05	0.935	AACAAGACAGTGCAAGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	56	69	+	6.59574	6.23e-05	0.0995	GCCCCCGCGCGGAG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	83	96	+	6.59574	6.23e-05	0.0995	GCCCCCCCGCGACT
ESR1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	48	64	+	0.106061	6.23e-05	0.514	AAGGGCAGGGTGGGCCG
ESR1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	52	68	-	0.106061	6.23e-05	0.514	AAGGGCAGGGTGGGCCG
Rarg	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	38	53	+	-1.85714	6.23e-05	0.877	TGGGTCAACGGCTCAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	44	64	-	9.79592	6.23e-05	0.0191	GAAGGGGTGGGAAGCAGAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	80	100	-	9.79592	6.23e-05	0.0191	AGAGCCGGCAGGGAGGAAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	80	100	-	9.79592	6.23e-05	0.0191	AGAGCCGGCAGGGAGGAAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	10	30	+	9.79592	6.23e-05	0.0191	GGAGGGGAAAAGGAGGGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	10	30	+	9.79592	6.23e-05	0.0191	GGAGGGGAAAAGGAGGGGGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	36	56	+	9.79592	6.23e-05	0.0191	CAAGCTGGGAGGGAAGAAGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	44	64	+	9.79592	6.23e-05	0.0191	GGAGCAGAAAAAGCAAGTGCA
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	52	66	-	8.52459	6.24e-05	0.066	TGCCCCACCCCTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	67	86	+	3.98165	6.24e-05	0.0626	CCACTACCCAACCAGAGAGA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	67	86	+	3.98165	6.24e-05	0.0626	CCACTACCCAACCAGAGAGA
POU3F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	41	49	+	11.3673	6.24e-05	1	TATGGAAAT
POU3F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	41	49	+	11.3673	6.24e-05	1	TATGGAAAT
POU3F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	41	49	+	11.3673	6.24e-05	1	TATGGAAAT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.2.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.8.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.1.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.0.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.6.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.7.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.3.0	38	50	+	7.04918	6.24e-05	0.89	CATCCACAGGTTT
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	90	98	-	11.6512	6.24e-05	0.488	CACAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	90	98	-	11.6512	6.24e-05	0.488	CACAGGTGT
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	67	78	+	3.36066	6.24e-05	0.598	GGGCAGGTGACA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	67	78	+	3.36066	6.24e-05	0.598	GGGCAGGTGACA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	67	78	+	3.36066	6.24e-05	0.598	GGGCAGGTGACA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	67	78	+	3.36066	6.24e-05	0.598	GGGCAGGTGACA
RFX5	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	2	17	+	6.91379	6.24e-05	0.323	CGTTGCCAAGGTAGGC
RFX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	+	6.91379	6.24e-05	0.323	TGTTGTCATACCAATG
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	50	59	+	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	50	59	+	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	50	59	+	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	50	59	+	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	68	77	-	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	68	77	-	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	68	77	-	11	6.24e-05	1	TTGGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	68	77	-	11	6.24e-05	1	TTGGTGTGAA
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	4	12	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	4	12	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	9	17	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	17	25	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	31	39	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	39	47	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	39	47	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	59	67	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	59	67	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	67	75	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	92	100	+	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	26	34	-	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	90	98	-	11.2545	6.24e-05	0.348	GTGCCCAGG
HIC2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	98	106	-	11.2545	6.24e-05	0.348	GTGCCCAGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	42	56	-	10.5862	6.24e-05	0.0141	CGCCCACCCTCCAGC
SP2	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	74	88	+	10.5862	6.24e-05	0.0141	GCCCCTCTCCGCCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	51	68	+	-13.4079	6.24e-05	0.0524	GAGGAAGAGGAAGGAACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	51	68	+	-13.4079	6.24e-05	0.0524	GAGGAAGAGGAAGGAACG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	68	85	+	-13.4079	6.24e-05	0.0524	GAGGAAGAGGAAGGAACG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	30	47	-	-13.4079	6.24e-05	0.0524	GAGGAAGAGGAAGGAACG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	30	47	-	-13.4079	6.24e-05	0.0524	GAGGAAGAGGAAGGAACG
EHF	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	20	31	+	10.4098	6.24e-05	0.134	CTTCCGGAAGTC
EHF	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	35	-	10.4098	6.24e-05	0.134	CTTCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	80	91	+	10.4098	6.24e-05	0.134	CTTCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	80	91	+	10.4098	6.24e-05	0.134	CTTCCGGAAGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	86	100	-	6.63793	6.24e-05	0.0407	TACCTCCGCCGCACT
HOXC10	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	12	21	-	11.7273	6.24e-05	1	GTCGTAAACC
HOXC10	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	94	103	+	11.7273	6.24e-05	1	GTCGTAAACC
EGR2	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	63	73	+	9.68966	6.24e-05	0.0825	GCGCTCACGCA
EGR2	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	99	109	+	9.68966	6.24e-05	0.0825	GCGCTCACGCA
TFEB	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	+	11.3846	6.24e-05	0.167	CGCACGTGCC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	11.3846	6.24e-05	0.167	TCCACGTGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	11.3846	6.24e-05	0.167	TCCACGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	11.3846	6.24e-05	0.167	TCCACGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	11.3846	6.24e-05	0.167	TCCACGTGAC
TFEB	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	+	11.3846	6.24e-05	0.167	CGCACGTGCC
TFEB	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	-	11.3846	6.24e-05	0.167	CGCACGTGCC
TFEB	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	-	11.3846	6.24e-05	0.167	CGCACGTGCC
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	93	109	-	3.47541	6.24e-05	0.563	CGGTCCAGGAGGGGTCT
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	29	40	+	9.25455	6.24e-05	0.115	AAACCGGATATG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	29	40	+	9.25455	6.24e-05	0.115	AAACCGGATATG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	81	92	+	9.25455	6.24e-05	0.115	TTCCAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	81	92	+	9.25455	6.24e-05	0.115	TTCCAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	101	112	+	9.25455	6.24e-05	0.115	TTCCAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	101	112	+	9.25455	6.24e-05	0.115	TTCCAGGAAGTT
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	3	21	+	8.88525	6.24e-05	0.122	CTGGCGGCCGGGGGCAGCG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	3	21	+	8.88525	6.24e-05	0.122	CTGGCGGCCGGGGGCAGCG
CTCF	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	25	43	+	8.88525	6.24e-05	0.122	TAGCCAGCTGCGGGCGGAC
CTCF	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	12	30	-	8.88525	6.24e-05	0.122	TAGCCAGCTGCGGGCGGAC
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	72	90	-	8.88525	6.24e-05	0.122	TAGCCAGCTGCGGGCGGAC
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	72	90	-	8.88525	6.24e-05	0.122	TAGCCAGCTGCGGGCGGAC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	76	94	-	8.88525	6.24e-05	0.122	CAGACAGGAGAAGGCAGCT
T	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	50	+	8.11538	6.24e-05	1	TCGCACCTCTGTGACG
T	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	33	48	-	8.11538	6.24e-05	1	TCGCACCTCTGTGACG
T	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	82	+	8.11538	6.24e-05	1	TCGCACCTCTGTGACG
T	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	65	80	-	8.11538	6.24e-05	1	TCGCACCTCTGTGACG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	2	18	+	4.10909	6.24e-05	0.0295	CGCGCCCCTCCCCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	2	18	+	4.10909	6.24e-05	0.0295	CGCGCCCCTCCCCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	17	33	-	4.10909	6.24e-05	0.0295	GCCGCCCCACCCCCCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	17	33	-	4.10909	6.24e-05	0.0295	GCCGCCCCACCCCCCCG
SP4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	93	109	-	4.10909	6.24e-05	0.0295	CTCACCACGCCCTGCCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	53	67	+	10.5091	6.24e-05	0.109	GACCTCCTCCTGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	53	67	+	10.5091	6.24e-05	0.109	GACCTCCTCCTGGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	86	100	+	10.5091	6.24e-05	0.109	GACCTCCTCCTGGGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	86	100	+	10.5091	6.24e-05	0.109	GACCTCCTCCTGGGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	96	110	-	10.5091	6.24e-05	0.109	GCCGCCCCGCGGCCG
ETV5	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	13	22	+	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	27	36	+	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	40	49	+	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	82	91	+	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	24	33	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	34	43	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	34	43	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	61	70	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.3455	6.24e-05	0.111	CCCGGAAGTT
ETV5	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	66	75	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	79	88	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	93	102	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	93	102	-	11.3455	6.24e-05	0.111	GGCGGAAGCG
EVX1	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	4	13	+	10.3396	6.25e-05	1	AGTGATTAGC
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	19	+	3.62069	6.25e-05	0.192	GGCCACGTGGCG
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	19	+	3.62069	6.25e-05	0.192	GGCCACGTGGCG
HES7	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	107	-	3.62069	6.25e-05	0.192	GGCCACGTGGCG
RXRG	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	4	17	+	2.06383	6.25e-05	0.48	AAGTTCATTGGTCA
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	49	62	+	2.06383	6.25e-05	0.48	AAGGTCACAGGTCT
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	49	62	+	2.06383	6.25e-05	0.48	AAGGTCACAGGTCT
SCRT1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	30	44	-	7.54098	6.25e-05	0.827	ATGTCACAGGTTGTA
TBX1	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	56	63	-	11.3469	6.25e-05	0.756	AGGTGTTA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	20	37	+	-13.4211	6.25e-05	0.0524	GGGAAGGCGGAGGGATGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	47	57	+	11.1207	6.25e-05	0.0484	TCGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	58	68	-	11.1207	6.25e-05	0.0484	TCGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	58	68	-	11.1207	6.25e-05	0.0484	TCGCGCGAGGG
ELF3	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	26	38	+	8.5	6.25e-05	0.167	TGGCCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	77	89	-	8.5	6.25e-05	0.167	TGGCCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	77	89	-	8.5	6.25e-05	0.167	TGGCCGGAAGTGC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	32	45	-	7.72857	6.25e-05	0.192	TGCTGACGTCAGGC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	17	30	+	7.72857	6.25e-05	0.192	TGCTGACGTCAGGC
Mafb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	63	74	-	11.3933	6.25e-05	0.865	TCAGTGCTGACT
Mafb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	63	74	-	11.3933	6.25e-05	0.865	TCAGTGCTGACT
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	5	16	+	11.3933	6.25e-05	0.865	GATCTGCTGAGG
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	5	16	+	11.3933	6.25e-05	0.865	GATCTGCTGAGG
ESR2	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	55	69	-	10.8654	6.25e-05	0.449	AGGGCAGGGAGGTCC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	7	27	+	9.16129	6.25e-05	0.187	CTGGGCTTTTCTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	7	27	+	9.16129	6.25e-05	0.187	CTGGGCTTTTCTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	32	52	+	9.16129	6.25e-05	0.187	TTGGGTTTTCCCTTTTGCCTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	32	52	+	9.16129	6.25e-05	0.187	TTGGGTTTTCCCTTTTGCCTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	32	52	+	9.16129	6.25e-05	0.187	TTGGGTTTTCCCTTTTGCCTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	32	52	+	9.16129	6.25e-05	0.187	TTGGGTTTTCCCTTTTGCCTT
IRF1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	36	56	+	9.16129	6.25e-05	0.187	CTCCTCTTCCTCTTCCTCTCC
IRF1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	44	64	+	9.16129	6.25e-05	0.187	CTCCTCTTCCTCTTCCTCTCC
IRF1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	51	71	-	9.16129	6.25e-05	0.187	CTCCTCTTCCTCTTCCTCTCC
IRF1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	59	79	-	9.16129	6.25e-05	0.187	CTCCTCTTCCTCTTCCTCTCC
IRF1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	63	83	-	9.16129	6.25e-05	0.187	TTGGGTTTTCCCTTTTGCCTT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	26	38	+	10.4918	6.25e-05	0.0586	TGCCCTGTTGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	26	38	+	10.4918	6.25e-05	0.0586	TGCCCTGTTGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	26	38	+	10.4918	6.25e-05	0.0586	TGCCCTGTTGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	26	38	+	10.4918	6.25e-05	0.0586	TGCCCTGTTGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	74	86	+	10.4918	6.25e-05	0.0586	CGCCCCAGAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	101	113	+	10.4918	6.25e-05	0.0586	GGCCCGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	101	113	+	10.4918	6.25e-05	0.0586	GGCCCGGGCGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	101	113	+	10.4918	6.25e-05	0.0586	GGCCCGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	101	113	+	10.4918	6.25e-05	0.0586	GGCCCGGGCGGGA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	77	89	-	10.4918	6.25e-05	0.0586	TGCCCTGTTGGCG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	23	36	-	5.85714	6.25e-05	0.0723	GCGGGGAAATGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	28	41	+	5.85714	6.25e-05	0.0723	GTGGCATTAGGGGA
FOSL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	3	13	-	10.8364	6.25e-05	0.225	ATTGACTCATA
FOSL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	3	13	-	10.8364	6.25e-05	0.225	ATTGACTCATA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	22	40	+	10.6774	6.25e-05	0.149	ACGGGCACTGGACTGGAAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	22	40	+	10.6774	6.25e-05	0.149	ACGGGCACTGGACTGGAAC
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	44	58	+	10.8085	6.25e-05	0.321	GGACATGATATAATG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	33	43	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	54	64	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	54	64	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	54	64	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	93	103	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	93	103	+	9.67241	6.25e-05	0.0825	CCGCCCTCGCA
FOXF2	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	26	39	+	11.2111	6.26e-05	1	GCCTGGTAAACAGA
DBP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	+	11.4717	6.26e-05	1	GATGACGTAAGC
DBP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	+	11.4717	6.26e-05	1	GATGACGTAAGC
DBP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	+	11.4717	6.26e-05	1	GATGACGTAAGC
DBP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	+	11.4717	6.26e-05	1	GATGACGTAAGC
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	10	22	+	8.48485	6.26e-05	0.264	CGGGGAAGGCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	10	22	+	8.48485	6.26e-05	0.264	CGGGGAAGGCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	67	79	+	8.48485	6.26e-05	0.264	CGGGGAAGGCCCT
NFKB2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	36	48	-	8.48485	6.26e-05	0.264	CGGGGAAGGCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	93	105	-	8.48485	6.26e-05	0.264	CGGGGAAGGCCCT
E2F6	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	5	15	-	11.3448	6.26e-05	0.0691	GCGAGGGAGCC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	80	90	-	11.3448	6.26e-05	0.0691	AGGTGGGAGAG
E2F6	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	67	77	+	11.3448	6.26e-05	0.0691	AGGTGGGAGAG
E2F6	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	100	110	+	11.3448	6.26e-05	0.0691	GCGAGGGAGCC
FLI1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	11.2766	6.26e-05	0.12	CCCGGAAGTA
FLI1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	11.2766	6.26e-05	0.12	CCCGGAAGTA
Zfx	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	25	38	-	10.9697	6.26e-05	0.0599	GGGGGCGGGCCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	26	39	-	10.9697	6.26e-05	0.0599	CACCGTGAGGCCTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	42	55	+	10.9697	6.26e-05	0.0599	GGGCGCCTGGCCTC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	6	18	+	10.1034	6.26e-05	0.0554	GGCCGTTAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	+	10.1034	6.26e-05	0.0554	TCCCGCGAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	+	10.1034	6.26e-05	0.0554	TCCCGCGAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	+	10.1034	6.26e-05	0.0554	TCCCGCGAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	+	10.1034	6.26e-05	0.0554	TCCCGCGAGGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	97	109	-	10.1034	6.26e-05	0.0554	GGCCGTTAGGGCG
KLF14	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	11	24	-	9	6.26e-05	0.0348	CGTCCCGCCCTCTC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	46	59	+	9	6.26e-05	0.0348	CGGCCCGCCCCTCG
KLF14	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	51	64	+	9	6.26e-05	0.0348	GGCTCCGCCCTCTG
KLF14	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	51	64	-	9	6.26e-05	0.0348	GGCTCCGCCCTCTG
KLF14	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	91	104	+	9	6.26e-05	0.0348	CGTCCCGCCCTCTC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	25	33	+	10.1447	6.26e-05	0.215	CTTCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	25	33	+	10.1447	6.26e-05	0.215	CTTCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	25	33	+	10.1447	6.26e-05	0.215	CTTCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	25	33	+	10.1447	6.26e-05	0.215	CTTCCCGCA
GLIS3	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	23	36	+	4.06061	6.26e-05	0.379	CACCTCACACATTG
GLIS3	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	79	92	-	4.06061	6.26e-05	0.379	CACCTCACACATTG
NEUROG2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	25	34	-	9.9697	6.26e-05	1	ACCATCTGTC
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	37	57	-	5.33673	6.26e-05	0.219	TTTTATACCCTGGCCAGTTCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	27	38	+	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	27	38	+	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
SP8	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	24	35	-	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	80	91	+	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	80	91	+	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	80	91	+	10.9605	6.26e-05	0.032	GCCCCGCCCTCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	21	34	+	10.4423	6.26e-05	0.0243	CCCCTGCCCCCATT
EGR1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	9	22	-	10.4423	6.26e-05	0.0243	CCCTCGCCCACAGG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	100	110	+	11.1034	6.26e-05	0.0484	TGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	100	110	+	11.1034	6.26e-05	0.0484	TGGCGGGGAGA
Nfe2l2	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	13	27	+	9.93939	6.26e-05	0.311	GACGGTGACTCAGGC
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	9	23	-	9.93939	6.26e-05	0.311	GCGTGTGACCCGGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	9	23	-	9.93939	6.26e-05	0.311	GCGTGTGACCCGGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	32	46	-	9.93939	6.26e-05	0.311	GACGGTGACTCAGGC
Nfe2l2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	32	46	-	9.93939	6.26e-05	0.311	GACGGTGACTCAGGC
Nfe2l2	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	69	83	+	9.93939	6.26e-05	0.311	GACGGTGACTCAGGC
Nfe2l2	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	88	102	-	9.93939	6.26e-05	0.311	GACGGTGACTCAGGC
Hnf4a	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	15	30	-	3.38182	6.26e-05	0.489	GAGGTCAGAGCTCGGC
Hnf4a	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	85	100	+	3.38182	6.26e-05	0.489	GAGGTCAGAGCTCGGC
PHOX2A	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	21	31	+	11.24	6.26e-05	1	TAACTCAATAA
PHOX2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	84	94	-	11.24	6.26e-05	1	TAACTCAATAA
PHOX2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	84	94	-	11.24	6.26e-05	1	TAACTCAATAA
PHOX2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	84	94	-	11.24	6.26e-05	1	TAACTCAATAA
Gfi1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	59	68	-	11.0244	6.27e-05	0.548	GAAATCTCTG
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	+	7.06122	6.27e-05	0.2	TGTGACGTAAGC
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	40	51	+	7.06122	6.27e-05	0.2	GATAACGTCATT
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	+	7.06122	6.27e-05	0.2	TGTGACGTAAGC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	49	63	+	11.2083	6.27e-05	0.567	GCATAAAGAGCCGGC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	49	63	+	11.2083	6.27e-05	0.567	GCATAAAGAGCCGGC
Sox17	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	57	65	+	11.6629	6.27e-05	1	AACATTGTC
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	61	71	+	10.4727	6.27e-05	0.267	ACCCGGAAACC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	71	81	-	11.9388	6.27e-05	0.183	AGCAGGTGGTG
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	40	+	11.9388	6.27e-05	0.183	AGCAGGTGGTG
SP1	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	11	21	+	11.0962	6.27e-05	0.0162	CTCCCACCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	19	29	+	11.0962	6.27e-05	0.0162	CCCCCACCTCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	30	40	-	11.0962	6.27e-05	0.0162	CTCCCACCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	31	41	-	11.0962	6.27e-05	0.0162	CCCCCACCTCG
SP1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	33	43	-	11.0962	6.27e-05	0.0162	CTCCCACCCCG
SP1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	72	82	+	11.0962	6.27e-05	0.0162	CTCCCACCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	94	104	-	11.0962	6.27e-05	0.0162	CTCCCACCCCG
EBF1	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	11	24	+	9.32787	6.27e-05	0.365	ATTCCCCTCGGAGC
EBF1	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	91	104	-	9.32787	6.27e-05	0.365	ATTCCCCTCGGAGC
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	33	-	11.1143	6.27e-05	0.224	GCCAGCTGTC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	33	-	11.1143	6.27e-05	0.224	GCCAGCTGTC
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	38	-	11.1143	6.27e-05	0.224	GCCAGCTGTC
Ascl2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	34	+	11.1143	6.27e-05	0.224	GCCAGCTGTC
HINFP	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	34	45	+	10.8636	6.27e-05	0.109	CCCCGTCCTCGG
HINFP	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	40	51	+	10.8636	6.27e-05	0.109	CCAGCTCCGCGG
HINFP	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	70	81	-	10.8636	6.27e-05	0.109	CCCCGTCCTCGG
NFE2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	2	12	+	5.89796	6.27e-05	0.333	GCTGACTCATT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	27	40	+	5.84694	6.27e-05	0.0723	GGGGGAGAGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	38	51	+	5.84694	6.27e-05	0.0723	GGGTCGCAGCGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	92	105	+	5.84694	6.27e-05	0.0723	GGGTCGCAGCGGGG
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	61	70	-	10.1939	6.27e-05	0.228	GGGACATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	61	70	-	10.1939	6.27e-05	0.228	GGGACATCCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	61	70	-	10.1939	6.27e-05	0.228	GGGACATCCC
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	41	55	+	10.8077	6.27e-05	0.176	CGAGGCTCCAATGAG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	41	55	+	10.8077	6.27e-05	0.176	CGAGGCTCCAATGAG
NFYB	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	97	111	-	10.8077	6.27e-05	0.176	GTGGCAGCCAATGAA
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	26	39	-	11.3654	6.27e-05	0.223	AGGAAATGACACAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	26	39	-	11.3654	6.27e-05	0.223	AGGAAATGACACAG
JUN(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	26	39	-	11.3654	6.27e-05	0.223	AGGAAATGACACAG
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	26	39	-	11.3654	6.27e-05	0.223	AGGAAATGACACAG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	77	90	-	11.3654	6.27e-05	0.223	GGAGTATGACTAAG
ETS1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
ETS1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.4655	6.27e-05	0.107	CCCGGAAGTC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	37	54	+	-13.4605	6.27e-05	0.0524	GGGCGGAGGGCAGGGGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	37	54	+	-13.4605	6.27e-05	0.0524	GGGCGGAGGGCAGGGGAG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	24	41	-	-13.4605	6.27e-05	0.0524	GGGCGGAGGGCAGGGGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	77	94	-	-13.4605	6.27e-05	0.0524	GGGAGAGGCGCAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	77	94	-	-13.4605	6.27e-05	0.0524	GGGAGAGGCGCAGGCGGG
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	80	89	-	11	6.27e-05	1	GCAGTTAAAA
Klf12	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	68	82	+	8.5082	6.27e-05	0.0663	GGCCCCGCGCACAGT
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.1	11	25	-	8.85246	6.27e-05	0.463	ATGACATAGCTTTTG
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.1	87	101	+	8.85246	6.27e-05	0.463	ATGACATAGCTTTTG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	39	52	+	5.77551	6.27e-05	0.365	TGGCATCAGCCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	39	52	+	5.77551	6.27e-05	0.365	TGGCATCAGCCCAG
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	39	52	+	5.77551	6.27e-05	0.365	TGGCATCAGCCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	39	52	+	5.77551	6.27e-05	0.365	TGGCATCAGCCCAG
KLF16	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	8	18	+	10.6379	6.27e-05	0.0217	GGCCCCCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	2	12	-	10.6379	6.27e-05	0.0217	ATCCCACCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	2	12	-	10.6379	6.27e-05	0.0217	ATCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	8	18	-	10.6379	6.27e-05	0.0217	ATCCCACCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	33	43	+	10.6379	6.27e-05	0.0217	ACCCCGCCTAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	28	38	-	10.6379	6.27e-05	0.0217	AACCCCCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	28	38	-	10.6379	6.27e-05	0.0217	AACCCCCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	43	53	+	10.6379	6.27e-05	0.0217	GGCCCCCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	60	70	+	10.6379	6.27e-05	0.0217	ACCCCGCCTAC
KLF16	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	62	72	-	10.6379	6.27e-05	0.0217	GGCCCCCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	79	89	+	10.6379	6.27e-05	0.0217	CACACGCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	79	89	+	10.6379	6.27e-05	0.0217	CACACGCCCCA
KLF16	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	97	107	-	10.6379	6.27e-05	0.0217	GGCCCCCCCCC
ID4	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	101	110	-	12.2131	6.27e-05	0.389	CGCACCTGGT
ID4	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	5	14	+	12.2131	6.27e-05	0.389	CGCACCTGGT
SP4	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	19	35	-	4.09091	6.27e-05	0.0296	CCAGCCCAGCCCCTCAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	22	38	-	4.09091	6.27e-05	0.0296	GCTACCCCTCCCCCCCG
Bcl6	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	16	29	+	10.9355	6.28e-05	0.445	ATTACTAGAAAGGG
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	81	98	-	11.0222	6.28e-05	0.965	GCAAGCTCATCAGTAACT
ZIC1	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	11	24	+	6.57447	6.28e-05	0.0995	CCCCGCCCGCTGGT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	31	44	-	6.57447	6.28e-05	0.0995	AGCCCCACACTGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	31	44	-	6.57447	6.28e-05	0.0995	AGCCCCACACTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	31	44	-	6.57447	6.28e-05	0.0995	AGCCCCACACTGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	31	44	-	6.57447	6.28e-05	0.0995	AGCCCCACACTGCG
FIGLA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	1	10	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	1	10	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	13	22	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	13	22	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	51	60	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	51	60	-	11.7069	6.28e-05	0.859	CCCACCTGGC
FIGLA	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	60	69	+	11.7069	6.28e-05	0.859	CCCACCTGGC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	47	57	-	11.3793	6.28e-05	0.276	GGCTGTGGGTG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	47	57	-	11.3793	6.28e-05	0.276	GGCTGTGGGTG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	67	77	+	11.3793	6.28e-05	0.276	GGCTGTGGGTG
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	67	77	+	11.3793	6.28e-05	0.276	GGCTGTGGGTG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	18	32	+	7.55263	6.28e-05	0.252	AGGATTACTAACCAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	64	+	11.9592	6.28e-05	0.159	AGCAGCTGTCC
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	64	+	11.9592	6.28e-05	0.159	AGCAGCTGTCC
Pax6	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	19	32	+	10.7444	6.28e-05	1	TTGCCGCATGATTG
Pax6	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	83	96	-	10.7444	6.28e-05	1	TTGCCGCATGATTG
MSC	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	81	+	10.7439	6.28e-05	0.569	ACCACCTGCT
MSC	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	39	-	10.7439	6.28e-05	0.569	ACCACCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	90	-	10.7439	6.28e-05	0.569	ACCACCTGCT
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	12	22	-	11.5102	6.28e-05	0.363	GCTTCCCTGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	12	22	-	11.5102	6.28e-05	0.363	GCTTCCCTGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	12	22	-	11.5102	6.28e-05	0.363	GCTTCCCTGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	12	22	-	11.5102	6.28e-05	0.363	GCTTCCCTGAA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	+	11.2545	6.28e-05	0.0702	TGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	+	11.2545	6.28e-05	0.0702	TGCCGGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	+	11.2545	6.28e-05	0.0702	ACCCTGGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	40	50	+	11.2545	6.28e-05	0.0702	AGCCCACGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	40	50	+	11.2545	6.28e-05	0.0702	AGCCCACGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	91	101	+	11.2545	6.28e-05	0.0702	AGCCCACGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	-	11.2545	6.28e-05	0.0702	ACCCTGGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	-	11.2545	6.28e-05	0.0702	ACCCTGGGGCA
REL	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	21	30	-	11.2525	6.28e-05	0.32	GCGGCTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	54	63	-	11.2525	6.28e-05	0.32	GGGCGTTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	104	113	-	11.2525	6.28e-05	0.32	GGGCGTTTCC
BATF::JUN	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	21	31	+	11.5577	6.28e-05	0.393	GGGATGAGTGA
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	63	73	-	11.5577	6.28e-05	0.393	GGGATGAGTGA
BATF::JUN	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	84	94	-	11.5577	6.28e-05	0.393	GGGATGAGTGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	84	94	-	11.5577	6.28e-05	0.393	GGGATGAGTGA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	100	110	-	11.5577	6.28e-05	0.393	GGGATGAGTGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	100	110	-	11.5577	6.28e-05	0.393	GGGATGAGTGA
ELF5	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	15	25	+	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	26	-	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	48	58	+	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	48	58	+	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	48	58	+	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	48	58	+	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	84	-	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	84	-	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	84	-	11.4364	6.28e-05	0.139	AACAGGAAATG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	84	-	11.4364	6.28e-05	0.139	AACAGGAAATG
ERF	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	25	34	+	11.2	6.28e-05	0.11	ACAGGATGTG
ERF	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	20	29	-	11.2	6.28e-05	0.11	ACAGGATGTG
ERF	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	38	47	+	11.2	6.28e-05	0.11	ACAGGATGTG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	53	62	+	11.2	6.28e-05	0.11	TCCGGAAGTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	53	62	+	11.2	6.28e-05	0.11	TCCGGAAGTG
ERF	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	60	-	11.2	6.28e-05	0.11	TCCGGAAGTG
ERF	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	62	71	+	11.2	6.28e-05	0.11	TCCGGAAGTG
ERF	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	75	84	+	11.2	6.28e-05	0.11	TCCGGAAGTG
ERF	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	88	97	-	11.2	6.28e-05	0.11	ACAGGATGTG
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	84	100	+	10.8158	6.28e-05	0.668	TCCGTGACGTCAGAGCA
Gmeb1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	15	31	-	10.8158	6.28e-05	0.668	TCCGTGACGTCAGAGCA
ESRRB	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	1	11	-	8.68966	6.28e-05	1	ACAAGGTCAGG
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	9	19	-	8.68966	6.28e-05	1	CCAAGGTCGCG
ESRRB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	9	19	-	8.68966	6.28e-05	1	CCAAGGTCGCG
ESRRB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	21	31	-	8.68966	6.28e-05	1	CCAAGGTCGCG
ESRRB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	41	51	-	8.68966	6.28e-05	1	CCAAGGTCGCG
HES7	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	13	24	+	3.60345	6.29e-05	0.192	TGGCGCCTGCCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	70	81	-	3.60345	6.29e-05	0.192	CTGCACGAGCCA
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	70	81	-	3.60345	6.29e-05	0.192	CTGCACGAGCCA
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	70	81	-	3.60345	6.29e-05	0.192	CTGCACGAGCCA
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	70	81	-	3.60345	6.29e-05	0.192	CTGCACGAGCCA
HES7	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	91	102	-	3.60345	6.29e-05	0.192	TGGCGCCTGCCG
Nr5a2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	83	97	+	10.3621	6.29e-05	0.504	AAGCACAAGGACTGG
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	11	21	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	25	35	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	29	39	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	21	31	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	21	31	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	33	43	+	11.0152	6.29e-05	0.0469	GGGCCCGCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	30	40	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	31	41	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	42	52	+	11.0152	6.29e-05	0.0469	GGGCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	43	53	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	43	53	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	43	53	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	35	45	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	35	45	-	11.0152	6.29e-05	0.0469	GCTCACACCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	43	53	-	11.0152	6.29e-05	0.0469	GGGCCCGCCCT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	55	65	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	56	66	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	49	59	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	62	72	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	62	72	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	62	72	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	62	72	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	62	72	+	11.0152	6.29e-05	0.0469	GGGCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	64	74	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	64	74	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	64	74	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	67	77	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	62	72	-	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	75	85	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	78	88	+	11.0152	6.29e-05	0.0469	TGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	72	82	-	11.0152	6.29e-05	0.0469	GGGCCCGCCCT
RFX2	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	-	6.2	6.29e-05	0.357	GGTGGCCCTGGAAACG
RFX2	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	+	6.2	6.29e-05	0.357	GGTGGCCCTGGAAACG
SP2	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	41	55	-	10.569	6.29e-05	0.0142	GCGCCGCCCCCGCGC
SP2	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	60	74	+	10.569	6.29e-05	0.0142	GCGCCGCCCCCGCGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	6	23	-	-13.4868	6.29e-05	0.0524	GTGAAGAAGAAAGCAAGT
NFKB2	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	24	36	-	8.4697	6.29e-05	0.264	CGGTTCTTCCCCC
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	75	87	-	8.4697	6.29e-05	0.264	CTGGGAATCCCCT
ZIC3	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	23	37	+	8.31429	6.29e-05	0.113	CGCTCCCCGCAGGGG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	54	74	+	9.14516	6.29e-05	0.187	TGAAGTTTTCTTTTTCTCCTT
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	80	91	-	7.04082	6.29e-05	0.2	GATGGCGTCACT
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	11.4545	6.29e-05	0.585	GCCACGTGCC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	11.4545	6.29e-05	0.585	GCCACGTGCC
GCM2	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	42	51	-	11.2623	6.29e-05	0.718	AGTGCGGGCA
DUXA	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	39	51	-	11.3387	6.29e-05	1	GTAAGCGAATCAG
DUXA	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	64	76	+	11.3387	6.29e-05	1	GTAAGCGAATCAG
Znf423	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	40	-	6.13483	6.29e-05	0.315	CCACCCCTGCGGGGA
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	55	68	+	6.59211	6.29e-05	0.56	GAACCAGCTGCCCG
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	55	68	+	6.59211	6.29e-05	0.56	GAACCAGCTGCCCG
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	45	59	+	10.8846	6.29e-05	0.335	CAGGGCCAAAGGTTG
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	45	59	+	10.8846	6.29e-05	0.335	CAGGGCCAAAGGTTG
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	90	104	-	10.8846	6.29e-05	0.335	CAGGGCCAAAGGTTG
NFIL3	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	60	70	+	11.1313	6.29e-05	1	TTATATAACCA
NFIL3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	45	55	-	11.1313	6.29e-05	1	TTATATAACCA
NFIL3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	45	55	-	11.1313	6.29e-05	1	TTATATAACCA
NFIL3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	45	55	-	11.1313	6.29e-05	1	TTATATAACCA
NFIL3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	45	55	-	11.1313	6.29e-05	1	TTATATAACCA
NFIL3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	45	55	-	11.1313	6.29e-05	1	TTATATAACCA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	10	24	-	9.54286	6.3e-05	0.122	CAAGGGCGGAGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	10	24	-	9.54286	6.3e-05	0.122	CAAGGGCGGAGGCGG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	15	29	-	9.54286	6.3e-05	0.122	AGAGTGCGAGGGGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	52	65	+	8.37705	6.3e-05	0.185	GGCCCACCGCAGGG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	52	65	+	8.37705	6.3e-05	0.185	GGCCCACCGCAGGG
GLIS2	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	50	63	-	8.37705	6.3e-05	0.185	GGCCCACCGCAGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	95	108	+	8.37705	6.3e-05	0.185	GGCCCACCGCAGGG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	95	108	+	8.37705	6.3e-05	0.185	GGCCCACCGCAGGG
NFATC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	68	77	+	10.6098	6.3e-05	0.956	AATTTCCATC
NFATC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	68	77	+	10.6098	6.3e-05	0.956	AATTTCCATC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	35	52	+	-13.5	6.3e-05	0.0524	AGAAGAAGGGCGGGCGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	54	71	+	-13.5	6.3e-05	0.0524	GGAGGGGGGGGGGGCGTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	60	77	+	-13.5	6.3e-05	0.0524	GGAGGGGGGGGGGGCGTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	8	25	-	-13.5	6.3e-05	0.0524	GGAGGGGGGGGGGGCGTG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	38	55	-	-13.5	6.3e-05	0.0524	GGAGGGGGGGGGGGCGTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	44	61	-	-13.5	6.3e-05	0.0524	GGAGGGGGGGGGGGCGTG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	63	80	-	-13.5	6.3e-05	0.0524	AGAAGAAGGGCGGGCGGG
Hoxa9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	1	11	-	11.0658	6.3e-05	1	GCCGTCAATCT
Hoxa9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	1	11	-	11.0658	6.3e-05	1	GCCGTCAATCT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	81	91	-	11.3276	6.3e-05	0.0691	TAGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	81	91	-	11.3276	6.3e-05	0.0691	TAGAGGGAAGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	81	91	-	11.3276	6.3e-05	0.0691	TAGAGGGAAGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	81	91	-	11.3276	6.3e-05	0.0691	TAGAGGGAAGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	81	91	-	11.3276	6.3e-05	0.0691	TAGAGGGAAGG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	6	16	+	11.4182	6.3e-05	0.0551	TCCCCCCGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	16	26	-	11.4182	6.3e-05	0.0551	TCCCCCCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	16	26	-	11.4182	6.3e-05	0.0551	TCCCCCCGGCA
TFAP2A	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	22	32	-	11.4182	6.3e-05	0.0551	CGCCCCCAGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	39	49	+	11.4182	6.3e-05	0.0551	CGCCCCCAGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	39	49	+	11.4182	6.3e-05	0.0551	CGCCCCCAGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	41	51	-	11.4182	6.3e-05	0.0551	CGCCCCCAGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	83	93	+	11.4182	6.3e-05	0.0551	CGCCCCCAGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	89	99	+	11.4182	6.3e-05	0.0551	TCCCCCCGGCA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	99	109	-	11.4182	6.3e-05	0.0551	TCCCCCCGGCA
RORA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	19	32	+	6.89888	6.3e-05	1	AAAAATTAGGACAC
RORA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	19	32	+	6.89888	6.3e-05	1	AAAAATTAGGACAC
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	19	32	+	6.89888	6.3e-05	1	AAAAATTAGGACAC
RORA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	19	32	+	6.89888	6.3e-05	1	AAAAATTAGGACAC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	53	66	+	10.9545	6.3e-05	0.0599	GTGGGAGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	53	66	+	10.9545	6.3e-05	0.0599	GTGGGAGAGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	47	60	-	10.9545	6.3e-05	0.0599	CGGGGCGGGCCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	49	62	-	10.9545	6.3e-05	0.0599	GTGGGAGAGGCCTG
HES5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	22	33	+	3	6.3e-05	0.298	GAGCACGCGCCT
HES5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	22	33	+	3	6.3e-05	0.298	GAGCACGCGCCT
Hes1	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	17	26	-	10.007	6.3e-05	0.106	ACCACGCGAC
NRF1	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	9	19	-	10.2545	6.3e-05	0.0201	GCACAGGCGCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	14	24	-	10.6207	6.3e-05	0.0217	GCCACGCCAAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	14	24	-	10.6207	6.3e-05	0.0217	GCCACGCCAAC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	46	56	+	10.6207	6.3e-05	0.0217	GCCACGCCAAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	46	56	+	10.6207	6.3e-05	0.0217	GCCACGCCAAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	49	59	+	10.6207	6.3e-05	0.0217	CACACGCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	49	59	+	10.6207	6.3e-05	0.0217	CACACGCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	49	59	+	10.6207	6.3e-05	0.0217	CACACGCCCGC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	49	59	+	10.6207	6.3e-05	0.0217	CACACGCCCGC
KLF16	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	59	69	-	10.6207	6.3e-05	0.0217	GCCACGCCAAC
KLF16	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	91	101	+	10.6207	6.3e-05	0.0217	GCCACGCCAAC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	14	34	-	9.77551	6.3e-05	0.0192	GGAAGAGAGCTGGCCGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	14	34	-	9.77551	6.3e-05	0.0192	GGAAGAGAGCTGGCCGGAAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	53	73	-	9.77551	6.3e-05	0.0192	GGTGGCAGGTGGCGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	57	77	-	9.77551	6.3e-05	0.0192	GAAGGAAAAAAAAAAAAAGGC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	57	77	-	9.77551	6.3e-05	0.0192	GAAGGAAAAAAAAAAAAAGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	12	32	+	9.77551	6.3e-05	0.0192	GGAGGAGGAGGGAGGGGCGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	32	52	+	9.77551	6.3e-05	0.0192	GGGAGAGAGGAGGAGTAAAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.1	38	58	+	9.77551	6.3e-05	0.0192	CGAAGAGAACTAGGAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.0	38	58	+	9.77551	6.3e-05	0.0192	CGAAGAGAACTAGGAGGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	42	62	+	9.77551	6.3e-05	0.0192	GGTGGCAGGTGGCGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	42	62	+	9.77551	6.3e-05	0.0192	GGTGGCAGGTGGCGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	42	62	+	9.77551	6.3e-05	0.0192	GGTGGCAGGTGGCGGGAGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	42	62	+	9.77551	6.3e-05	0.0192	GGTGGCAGGTGGCGGGAGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	78	98	+	9.77551	6.3e-05	0.0192	CGAAGAGAACTAGGAGGAAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	90	110	+	9.77551	6.3e-05	0.0192	GATGGCGGCTGCGGGAGGGGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	50	62	-	8.48276	6.3e-05	0.167	AAGGAGGAAGTCG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	50	62	-	8.48276	6.3e-05	0.167	AAGGAGGAAGTCG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	50	62	-	8.48276	6.3e-05	0.167	AAGGAGGAAGTCG
ESR1	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	5	21	-	0.0606061	6.3e-05	0.514	GGGGTCAAGGAGGCCCG
ESR1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	50	66	+	0.0606061	6.3e-05	0.514	GGGGTCAAGGAGGCCCG
ESR1	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	38	54	-	0.0606061	6.3e-05	0.514	ACGGTAAAAGTGAGCTC
ESR1	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	61	77	+	0.0606061	6.3e-05	0.514	ACGGTAAAAGTGAGCTC
ESR1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	49	65	-	0.0606061	6.3e-05	0.514	GGGGTCAAGGAGGCCCG
ESR1	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	94	110	+	0.0606061	6.3e-05	0.514	GGGGTCAAGGAGGCCCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	+	10.4754	6.3e-05	0.0586	AGCCTTGTGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	+	10.4754	6.3e-05	0.0586	AGCCTTGTGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	65	77	+	10.4754	6.3e-05	0.0586	TGCCTTCACGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	65	77	+	10.4754	6.3e-05	0.0586	TGCCTTCACGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	65	77	+	10.4754	6.3e-05	0.0586	TGCCTTCACGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	-	10.4754	6.3e-05	0.0586	AGCCTTGTGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	-	10.4754	6.3e-05	0.0586	AGCCTTGTGGGCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	22	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	22	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	27	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	27	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	28	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	28	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	22	32	+	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	44	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	44	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	49	59	+	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	50	60	+	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	60	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	60	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	60	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	60	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	82	92	+	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	112	+	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	103	113	+	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	2	12	-	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	3	13	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	19	29	-	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	22	32	-	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	23	33	-	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	52	62	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	52	62	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	52	62	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	52	62	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	55	65	-	11.1301	6.3e-05	0.0224	GCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	67	77	-	11.1301	6.3e-05	0.0224	GCAACTCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	67	77	-	11.1301	6.3e-05	0.0224	GCAACTCCCAC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	71	81	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	88	98	-	11.1301	6.3e-05	0.0224	GCCCCTCCCCG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	21	31	+	10.623	6.3e-05	0.174	AACAGGAAGCT
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	23	33	+	10.623	6.3e-05	0.174	AACAGGAAGCT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	23	33	+	10.623	6.3e-05	0.174	AACAGGAAGCT
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	33	43	+	10.623	6.3e-05	0.174	AACAGGAAGCT
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	33	43	+	10.623	6.3e-05	0.174	AACAGGAAGCT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	72	82	-	10.623	6.3e-05	0.174	AACAGGAAGCT
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	-	3.32787	6.3e-05	0.598	TGGCATGTGTCC
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	+	3.32787	6.3e-05	0.598	TGGCATGTGTCC
PKNOX2	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	95	106	+	3.32787	6.3e-05	0.598	AGACAGGCGACA
ELF4	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	25	36	+	9.27869	6.3e-05	0.109	CAACAGGAAGTC
ELF4	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	90	-	9.27869	6.3e-05	0.109	CAACAGGAAGTC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	20	34	-	10.4909	6.3e-05	0.109	TCCTCCCCGCCGGGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	81	95	+	10.4909	6.3e-05	0.109	TCCTCCCCGCCGGGG
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	81	95	+	10.4909	6.3e-05	0.109	TCCTCCCCGCCGGGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	81	95	+	10.4909	6.3e-05	0.109	TCCTCCCCGCCGGGG
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	95	108	+	8.85484	6.3e-05	0.731	ATTAAAGCGAAAAG
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	95	108	+	8.85484	6.3e-05	0.731	ATTAAAGCGAAAAG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	77	94	+	-13.5132	6.3e-05	0.0524	GGAGAGAAGGTATGGAGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	21	38	-	-13.5132	6.3e-05	0.0524	GGAGAGAAGGTATGGAGG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	11.5385	6.3e-05	0.137	GCCGGATGTT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	11.5385	6.3e-05	0.137	GCCGGATGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	11.6	6.31e-05	0.129	ACCGGATGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	11.6	6.31e-05	0.129	ACCGGATGCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	14	30	+	4.07273	6.31e-05	0.0297	GCAGCCCCGCCCTGAAT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	14	30	+	4.07273	6.31e-05	0.0297	GCAGCCCCGCCCTGAAT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	41	+	4.07273	6.31e-05	0.0297	CCCACCCCCCCCCCCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	58	74	-	4.07273	6.31e-05	0.0297	CCCGCCCCACCCCCGCT
ZBTB18	WILDTYPE__mrna.noflip.NA__chr3:180707407..180707521,-__1313.1.0.0	55	67	+	9.87143	6.31e-05	0.731	CGTGCAGGTGTTG
Crem	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	18	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	2	11	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	2	11	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	4	13	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	4	13	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	4	13	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	4	13	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	26	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	26	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	18	27	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	18	27	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	16	25	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	16	25	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	20	29	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	33	42	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	39	48	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	67	76	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	73	82	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	73	82	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	73	82	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	73	82	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	99	+	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	88	97	-	12.0164	6.31e-05	0.281	TCTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	97	106	-	12.0164	6.31e-05	0.281	TCTGACGTCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	-	10.0862	6.31e-05	0.0554	TCCCGCCAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	-	10.0862	6.31e-05	0.0554	TCCCGCCAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	68	80	-	10.0862	6.31e-05	0.0554	CGCCCAGGGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	68	80	-	10.0862	6.31e-05	0.0554	CGCCCAGGGGGGC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	30	46	-	0.8	6.31e-05	0.501	CGCCCCGCCCCGCTGCG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	30	46	-	0.8	6.31e-05	0.501	CGCCCCGCCCCGCTGCG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	6	18	+	10.2295	6.31e-05	0.0644	GGCCGTTAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	51	-	10.2295	6.31e-05	0.0644	ACCCCTGGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	51	-	10.2295	6.31e-05	0.0644	ACCCCTGGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	51	-	10.2295	6.31e-05	0.0644	ACCCCTGGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	51	-	10.2295	6.31e-05	0.0644	ACCCCTGGCGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	97	109	-	10.2295	6.31e-05	0.0644	GGCCGTTAGGGCG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	8	27	-	3.94495	6.31e-05	0.0626	CCATCCCCCACCCCTTCCCT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	8	27	-	3.94495	6.31e-05	0.0626	CCATCCCCCACCCCTTCCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	21	40	-	3.94495	6.31e-05	0.0626	GCACACATCAAACGCCATGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	21	40	-	3.94495	6.31e-05	0.0626	GCACACATCAAACGCCATGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	21	40	-	3.94495	6.31e-05	0.0626	GCACACATCAAACGCCATGC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	21	40	-	3.94495	6.31e-05	0.0626	GCACACATCAAACGCCATGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	10	29	+	3.94495	6.31e-05	0.0626	CACTCCCCTAACCCCACCCC
RREB1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	75	94	+	3.94495	6.31e-05	0.0626	GCACACATCAAACGCCATGC
HLF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	-	11.678	6.31e-05	1	AATTACGTAAGG
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	32	46	+	9.92424	6.31e-05	0.311	CACAATTATACAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	36	50	+	9.92424	6.31e-05	0.311	GACCATGACTCACGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	28	42	-	9.92424	6.31e-05	0.311	GACCATGACTCACGA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	28	42	-	9.92424	6.31e-05	0.311	GACCATGACTCACGA
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	93	107	+	10.4394	6.31e-05	0.11	GTCTCGCGGCGCGGG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	93	107	+	10.4394	6.31e-05	0.11	GTCTCGCGGCGCGGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	93	107	+	10.4394	6.31e-05	0.11	GTCTCGCGGCGCGGG
SCRT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	95	107	-	7.01639	6.31e-05	0.89	AAGCCACAAGTTA
SCRT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	95	107	-	7.01639	6.31e-05	0.89	AAGCCACAAGTTA
SCRT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	95	107	-	7.01639	6.31e-05	0.89	AAGCCACAAGTTA
SCRT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	95	107	-	7.01639	6.31e-05	0.89	AAGCCACAAGTTA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	34	+	10.9592	6.31e-05	0.243	GGGCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	34	+	10.9592	6.31e-05	0.243	GGGCACGTGG
Mitf	WILDTYPE__mrna.noflip.NA__chr4:95263952..95264066,-__1087.1.0.0	27	36	-	10.9592	6.31e-05	0.243	AATCACGAGC
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	45	54	-	10.9592	6.31e-05	0.243	GGGCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	45	54	-	10.9592	6.31e-05	0.243	GGGCACGTGG
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	47	56	-	11.68	6.31e-05	0.821	ATTATGCAAT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	47	56	-	11.68	6.31e-05	0.821	ATTATGCAAT
EGR3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	7	21	+	6.60345	6.31e-05	0.041	CCCCACCCCCTCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	29	43	-	6.60345	6.31e-05	0.041	CCACCCCCCCCCGCC
EGR3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	72	86	+	6.60345	6.31e-05	0.041	CCACCCCCCCCCGCC
ATF4	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	24	36	+	9.93443	6.31e-05	0.616	GGCTGACGTCATC
ATF4	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	31	43	+	9.93443	6.31e-05	0.616	GGATGATGTCATG
JUND	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	-	10.766	6.31e-05	0.222	GATGAGTCAGA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	+	10.766	6.31e-05	0.222	CATGACTCATA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	+	10.766	6.31e-05	0.222	CATGACTCATA
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	-	10.766	6.31e-05	0.222	GATGAGTCAGA
JUND	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	-	10.766	6.31e-05	0.222	GATGAGTCAGA
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	-	10.766	6.31e-05	0.222	CATGACTCATA
POU6F2	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	14	23	-	11.7091	6.31e-05	1	CGCTAATTAT
POU6F2	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	76	85	+	11.7091	6.31e-05	1	CGCTAATTAT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	12	23	+	10.9474	6.31e-05	0.0322	CCCACTCCTACC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	12	23	+	10.9474	6.31e-05	0.0322	CCCACTCCTACC
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	14	23	+	11.2929	6.31e-05	0.181	GGATGGGAAA
MAF::NFE2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	81	95	-	8.83607	6.31e-05	0.463	GTGACTCTGCTACCA
MAF::NFE2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	20	34	+	8.83607	6.31e-05	0.463	GTGACTCTGCTACCA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	89	102	-	5.82653	6.31e-05	0.0723	GTGGCGCAGGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	89	102	-	5.82653	6.31e-05	0.0723	GTGGCGCAGGGAGG
CEBPG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	24	33	+	10.5918	6.31e-05	0.888	AGTGCGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	24	33	+	10.5918	6.31e-05	0.888	AGTGCGCAAC
CEBPG	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	39	48	+	10.5918	6.31e-05	0.888	CTGGCGCAAC
CEBPG	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	82	91	-	10.5918	6.31e-05	0.888	AGTGCGCAAC
IRF8	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	48	61	-	-2.12727	6.31e-05	0.752	CCGGAAATGAAACT
E2F1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	87	98	-	11.1311	6.31e-05	0.427	AAAGGCGCTAAA
GLIS3	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	40	-	4.0303	6.31e-05	0.379	CAGCCCCCAGGGCG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	8	24	+	9.93878	6.32e-05	0.368	GGGGCAGCGTGCGGGGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	14	30	-	9.93878	6.32e-05	0.368	GGGGCAGCGTGCGGGGA
RARA::RXRA	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	85	101	+	9.93878	6.32e-05	0.368	GGGGCAGCGTGCGGGGA
RARA::RXRA	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	91	107	-	9.93878	6.32e-05	0.368	GGGGCAGCGTGCGGGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	10	23	+	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	10	23	+	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	10	23	+	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	16	29	-	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	16	29	-	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	48	61	+	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	48	61	+	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	50	63	-	10.4231	6.32e-05	0.0243	TGCCCTCCCTCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	50	63	-	10.4231	6.32e-05	0.0243	TGCCCTCCCTCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	50	63	-	10.4231	6.32e-05	0.0243	TGCCCTCCCTCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	50	63	-	10.4231	6.32e-05	0.0243	TGCCCTCCCTCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	54	67	-	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	86	99	+	10.4231	6.32e-05	0.0243	TGGCCGCCGCCACA
EGR1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	81	94	-	10.4231	6.32e-05	0.0243	TCACCTCCTCCTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	83	96	-	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	83	96	-	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	83	96	-	10.4231	6.32e-05	0.0243	CCCCTTCCGCCGCG
USF2	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	15	25	+	11.449	6.32e-05	0.151	ACCATGTGGTT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	50	62	-	11.9184	6.32e-05	0.177	CCCACCTGCGGCT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	50	62	-	11.9184	6.32e-05	0.177	CCCACCTGCGGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.3273	6.32e-05	0.111	TCCGGAAGCT
ETV5	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.3273	6.32e-05	0.111	TCCGGAAGCT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	87	96	+	11.3933	6.32e-05	0.93	TGTCTGGCTA
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	87	96	+	11.3933	6.32e-05	0.93	TGTCTGGCTA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	46	63	+	-13.5395	6.32e-05	0.0524	GGCAGGAGGCCGGGAGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	54	71	+	-13.5395	6.32e-05	0.0524	GGCGGGAGGGCGGGAGAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	44	61	-	-13.5395	6.32e-05	0.0524	GGCGGGAGGGCGGGAGAG
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	28	40	+	10.551	6.32e-05	0.308	GGCGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	28	40	+	10.551	6.32e-05	0.308	GGCGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	28	40	+	10.551	6.32e-05	0.308	GGCGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	28	40	+	10.551	6.32e-05	0.308	GGCGTGACGTCAC
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	78	92	-	10.8462	6.32e-05	0.449	AGGGCACACAAACCA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	78	92	-	10.8462	6.32e-05	0.449	AGGGCACACAAACCA
NFYB	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	10	24	-	10.7885	6.32e-05	0.176	ATAACAGCCAATCAT
NHLH1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	-	10.9828	6.32e-05	0.134	CACAGCTGTC
NHLH1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	-	10.9828	6.32e-05	0.134	CACAGCTGTC
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	-	10.9828	6.32e-05	0.134	AGCAGCTGGT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	-	10.9828	6.32e-05	0.134	AGCAGCTGGT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	+	10.9828	6.32e-05	0.134	CACAGCTGTC
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	+	10.9828	6.32e-05	0.134	CACAGCTGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	62	75	+	6.55319	6.32e-05	0.0995	CGCCCCCTGTTCCG
GCM1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	72	82	-	10.9796	6.32e-05	0.531	GATGCTGGTGT
Hnf4a	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	53	68	+	3.34545	6.32e-05	0.489	CAGGGCAGGGTTCACA
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	84	100	-	0.0454545	6.32e-05	0.514	AGGGTCACTGTGAGCAA
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	84	100	-	0.0454545	6.32e-05	0.514	AGGGTCACTGTGAGCAA
ESR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	84	100	-	0.0454545	6.32e-05	0.514	AGGGTCACTGTGAGCAA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	84	100	-	0.0454545	6.32e-05	0.514	AGGGTCACTGTGAGCAA
ESR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	84	100	-	0.0454545	6.32e-05	0.514	AGGGTCACTGTGAGCAA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	20	29	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	20	29	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	22	31	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	15	24	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	30	39	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	32	41	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	33	42	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	33	42	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	33	42	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	35	44	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	35	44	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	35	44	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	52	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	63	72	+	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	70	79	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	70	79	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	71	80	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	71	80	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	73	82	-	10.9286	6.32e-05	0.0227	GGGGCGGTGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	82	91	-	10.9286	6.32e-05	0.0227	TGGGTGTTGC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	41	59	-	10.7419	6.32e-05	0.674	TGACTTTATATGGCCTCAA
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	41	59	-	10.7419	6.32e-05	0.674	TGACTTTATATGGCCTCAA
PPARG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	10	29	-	7.25556	6.33e-05	1	CCGGGTCACGCTGCCCCCGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	11.5	6.33e-05	0.126	CCCGGAAGCA
ETV4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.5	6.33e-05	0.126	CCCGGAAGTC
ETV4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.5	6.33e-05	0.126	CCCGGAAGTC
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	18	32	+	8.3	6.33e-05	0.113	TCCTTCCTGCCGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	18	32	+	8.3	6.33e-05	0.113	TCCTTCCTGCCGCGT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	18	32	+	8.3	6.33e-05	0.113	TCCTTCCTGCCGCGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	39	53	+	8.3	6.33e-05	0.113	GCCCTCCCTCTGCTT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	33	47	-	8.3	6.33e-05	0.113	TCCTTCCTGCCGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	33	47	-	8.3	6.33e-05	0.113	TCCTTCCTGCCGCGT
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	79	93	-	11.5306	6.33e-05	1	CATTTGTTTACTGTA
Foxd3	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	79	90	-	11.4457	6.33e-05	1	TTTTGTTGTTTT
MYBL2	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	45	59	+	9.44262	6.33e-05	1	TACGGTTTATCTGCC
MYBL2	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	56	70	-	9.44262	6.33e-05	1	TACGGTTTATCTGCC
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	6	16	-	11.5	6.33e-05	0.393	ATGCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	6	16	-	11.5	6.33e-05	0.393	ATGCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	96	106	-	11.5	6.33e-05	0.393	ATGCTGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	96	106	-	11.5	6.33e-05	0.393	ATGCTGACTCA
HINFP	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	89	100	+	10.8485	6.33e-05	0.109	CAGGTTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	96	107	+	10.8485	6.33e-05	0.109	CGGCGTCCGGTC
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	96	107	+	10.8485	6.33e-05	0.109	CGGCGTCCGGTC
ELK4	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	103	113	-	11.4545	6.33e-05	0.0636	GAGTTTCCGGC
ELK4	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	2	12	+	11.4545	6.33e-05	0.0636	GAGTTTCCGGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	53	63	+	11.4545	6.33e-05	0.0636	AAGCTTCCGGT
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	11.431	6.33e-05	1	GACATATGCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	11	20	+	11.2857	6.33e-05	0.0236	TTCCCGCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	19	28	+	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	33	42	+	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	30	39	-	11.2857	6.33e-05	0.0236	GCTACGCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	70	79	+	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	73	82	-	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	73	82	-	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	74	83	-	11.2857	6.33e-05	0.0236	GTCACTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	89	98	+	11.2857	6.33e-05	0.0236	TTCCCGCCCA
TCF3	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	35	44	+	12.3462	6.33e-05	0.404	TGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	80	-	12.3462	6.33e-05	0.404	TGCACCTGTC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	80	-	12.3462	6.33e-05	0.404	TGCACCTGTC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	+	11.2692	6.33e-05	0.0758	TGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	+	11.2692	6.33e-05	0.0758	TGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	+	11.2692	6.33e-05	0.0758	TGCCGGCGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	+	11.2692	6.33e-05	0.0758	TGCCGGCGGCG
IRF1	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	12	32	-	9.12903	6.33e-05	0.187	TTCTTGTTTCATTTTGAGCCA
IRF1	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	83	103	+	9.12903	6.33e-05	0.187	TTCTTGTTTCATTTTGAGCCA
FLI1	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	11.2128	6.33e-05	0.12	GCCGGAAACA
FLI1	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	11.2128	6.33e-05	0.12	GCCGGAAACA
FLI1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	11.2128	6.33e-05	0.12	GCCGGAAACA
FLI1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	11.2128	6.33e-05	0.12	GCCGGAAACA
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	53	71	+	8.85246	6.33e-05	0.123	CGGACGGCTGAGGGCGGGC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	53	71	+	8.85246	6.33e-05	0.123	CGGACGGCTGAGGGCGGGC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	53	71	+	8.85246	6.33e-05	0.123	CGGACGGCTGAGGGCGGGC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	53	71	+	8.85246	6.33e-05	0.123	CGGACGGCTGAGGGCGGGC
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	12	22	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	22	32	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	22	32	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	22	32	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	22	32	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	22	32	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	98	108	+	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	3	13	-	11.2364	6.33e-05	0.0702	TCCCTGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	7	17	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	7	17	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	7	17	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	7	17	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	83	93	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	93	103	-	11.2364	6.33e-05	0.0702	CGCCCCAAGCG
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	62	71	-	11.8103	6.33e-05	0.659	TCTTTGTCCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	62	71	-	11.8103	6.33e-05	0.659	TCTTTGTCCC
GBX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	+	11.2979	6.33e-05	1	GCCAATTACG
GBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	+	11.2979	6.33e-05	1	GCCAATTACG
GBX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	-	11.2979	6.33e-05	1	GCCAATTACG
GBX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	-	11.2979	6.33e-05	1	GCCAATTACG
GBX2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	+	11.2979	6.33e-05	1	GCCAATTACG
GBX2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	-	11.2979	6.33e-05	1	GCCAATTACG
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	+	11.6346	6.33e-05	0.805	GTTGTGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	+	11.6346	6.33e-05	0.805	GTTGTGCAAT
CEBPD	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	+	11.6346	6.33e-05	0.805	GTTGTGCAAT
CEBPD	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	-	11.6346	6.33e-05	0.805	GTTGTGCAAT
CEBPD	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	-	11.6346	6.33e-05	0.805	GTTGTGCAAT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	14	24	-	9.65517	6.33e-05	0.0825	CCGCCCCCGTT
EGR2	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	40	50	+	9.65517	6.33e-05	0.0825	TCTCCCACGCC
EGR2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	57	67	+	9.65517	6.33e-05	0.0825	CCGCCCCCGTT
EGR2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	48	58	-	9.65517	6.33e-05	0.0825	CCGCCCCCGTT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	61	71	+	9.65517	6.33e-05	0.0825	CCGCCCCCGTT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	61	71	+	9.65517	6.33e-05	0.0825	CCGCCCCCGTT
EGR2	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	65	75	-	9.65517	6.33e-05	0.0825	TCTCCCACGCC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	-	10.2131	6.33e-05	0.0644	AGCCCGGAAGGGC
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	32	45	+	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	100	113	+	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	2	15	-	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	2	15	-	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	2	15	-	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	2	15	-	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	70	83	-	11.3462	6.33e-05	0.223	CGGGCCTGACTCAT
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	48	59	+	10.7414	6.33e-05	0.365	GCACCCACCGCC
TFAP4	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	22	-	10.9455	6.33e-05	0.655	ACCAGCTGGC
TFAP4	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	102	+	10.9455	6.33e-05	0.655	ACCAGCTGGC
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	106	+	10.9455	6.33e-05	0.655	ACCAGCTGGC
INSM1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	91	102	+	10.0816	6.33e-05	0.177	GGCCTGCGGGTG
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	5	15	+	11.0769	6.34e-05	0.0163	CTTCCGCCCCG
SP1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	33	43	+	11.0769	6.34e-05	0.0163	GGCCCACCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	41	51	+	11.0769	6.34e-05	0.0163	CTTCCGCCCCG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	72	82	-	11.0769	6.34e-05	0.0163	GGCCCACCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	103	113	-	11.0769	6.34e-05	0.0163	CCTCCGCCTCG
NFATC3	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	47	56	+	11.0606	6.34e-05	1	AGTTTCCATC
HOXB13	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	49	58	+	11.2909	6.34e-05	1	CCCATAAATA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	28	44	-	4.05455	6.34e-05	0.0297	CAAGCCGCGCCCAGCAA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	28	44	-	4.05455	6.34e-05	0.0297	CAAGCCGCGCCCAGCAA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	49	65	-	4.05455	6.34e-05	0.0297	GCGCCCCCGCCTCCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	49	65	-	4.05455	6.34e-05	0.0297	GCGCCCCCGCCTCCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	49	65	-	4.05455	6.34e-05	0.0297	GCGCCCCCGCCTCCTTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	49	65	-	4.05455	6.34e-05	0.0297	GCGCCCCCGCCTCCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	59	75	-	4.05455	6.34e-05	0.0297	GAAGTCCCGCCCCAGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	59	75	-	4.05455	6.34e-05	0.0297	GAAGTCCCGCCCCAGCC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	15	25	+	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	15	25	+	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	15	25	+	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	15	25	+	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	58	68	-	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	58	68	-	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	58	68	-	10.7455	6.34e-05	0.209	CGGTGACTAAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	58	68	-	10.7455	6.34e-05	0.209	CGGTGACTAAG
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	45	55	+	11.0492	6.34e-05	0.0647	GAGGAAGTGAC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	66	76	-	11.0492	6.34e-05	0.0647	GAGGAAGTGAC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	60	72	+	8.46552	6.34e-05	0.167	GAGCCGGAAGCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	2	15	-	10.9394	6.34e-05	0.0599	GGGGCCCCGCCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	2	15	-	10.9394	6.34e-05	0.0599	GGGGCCCCGCCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	100	113	+	10.9394	6.34e-05	0.0599	GGGGCCCCGCCCTC
TGIF1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	10	21	+	0.634615	6.34e-05	0.932	AGGCATGTGTCA
TGIF1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	105	-	0.634615	6.34e-05	0.932	AGGCATGTGTCA
Tcf12	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	8	18	-	11.9184	6.34e-05	0.184	GGCAGGTGGGG
Twist2	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	48	57	-	11.8361	6.34e-05	1	ACCACATGTA
Twist2	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	90	99	+	11.8361	6.34e-05	1	ACCACATGTA
HOXA13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	27	36	+	11.5	6.34e-05	1	ATAATAAAAA
HOXA13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	27	36	+	11.5	6.34e-05	1	ATAATAAAAA
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	79	88	-	11.5	6.34e-05	1	GCAATAAACA
NEUROD2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	11.5172	6.34e-05	1	AGCATATGTT
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	11.5172	6.34e-05	1	AGCATATGTT
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	11.5172	6.34e-05	1	AGCATATGTT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	35	44	+	10.622	6.34e-05	0.569	ACCAGCTGCC
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	35	44	+	10.622	6.34e-05	0.569	ACCAGCTGCC
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	57	66	+	10.622	6.34e-05	0.569	ACCAGCTGCC
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	57	66	+	10.622	6.34e-05	0.569	ACCAGCTGCC
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	86	95	+	10.622	6.34e-05	0.569	ACCAGCTGCC
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	86	95	+	10.622	6.34e-05	0.569	ACCAGCTGCC
Gata4	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	63	73	-	11.7414	6.34e-05	1	TGTTATCTTCC
HOXC11	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	79	-	11.6034	6.34e-05	1	AGTCATTAAAT
TBP	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	47	61	+	11.1944	6.34e-05	0.567	GCATAAAAGTCAGGG
TBP	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	47	61	+	11.1944	6.34e-05	0.567	GCATAAAAGTCAGGG
TBP	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	48	62	+	11.1944	6.34e-05	0.567	CCATAAAAGCCCTGT
TBP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	49	63	+	11.1944	6.34e-05	0.567	CTATAAAAGCTGCTT
TBP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	49	63	+	11.1944	6.34e-05	0.567	CTATAAAAGCTGCTT
TBP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	49	63	+	11.1944	6.34e-05	0.567	CTATAAAAGCTGCTT
TBP	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	49	63	+	11.1944	6.34e-05	0.567	CTATAAAAGCTGCTT
TBP	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	52	66	-	11.1944	6.34e-05	0.567	CTATAAAAGCTGCTT
TBP	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	54	68	-	11.1944	6.34e-05	0.567	GCATAAAAGTCAGGG
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	5	18	+	6.4878	6.34e-05	0.5	TTTGCACCCAGCTT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	5	18	+	6.4878	6.34e-05	0.5	TTTGCACCCAGCTT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	25	38	+	6.4878	6.34e-05	0.5	TTTGCACCCAGCTT
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	25	38	+	6.4878	6.34e-05	0.5	TTTGCACCCAGCTT
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	2	16	-	10.5517	6.34e-05	0.0143	CCTCCTCCTCCACCT
SP2	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	14	28	-	10.5517	6.34e-05	0.0143	TGCCCACCCACCCCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	90	104	-	10.5517	6.34e-05	0.0143	GCCCCTCCTTATTGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	90	104	-	10.5517	6.34e-05	0.0143	GCCCCTCCTTATTGC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	+	10.459	6.34e-05	0.0589	TCCCCTAGCGGCG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	24	38	-	6.58621	6.34e-05	0.041	CGCCCCCCCCGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	24	38	-	6.58621	6.34e-05	0.041	CGCCCCCCCCGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	24	38	-	6.58621	6.34e-05	0.041	CGCCCCCCCCGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	24	38	-	6.58621	6.34e-05	0.041	CGCCCCCCCCGCCGG
EGR3	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	51	65	+	6.58621	6.34e-05	0.041	CCGCCCCCACGCCCT
EGR3	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	50	64	-	6.58621	6.34e-05	0.041	CCGCCCCCACGCCCT
EGR3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	63	77	-	6.58621	6.34e-05	0.041	AGCCGCCGACGCCAA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	55	69	+	10.5091	6.34e-05	0.315	GAAGAGGGAGAGTCC
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	55	69	+	10.5091	6.34e-05	0.315	GAAGAGGGAGAGTCC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	67	81	-	10.5091	6.34e-05	0.315	ATGAAATGAGAGTGA
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	4	23	+	3.92661	6.34e-05	0.0628	CCCTCCCTCCCCCACTCCCA
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	4	23	+	3.92661	6.34e-05	0.0628	CCCTCCCTCCCCCACTCCCA
NRF1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	43	53	+	10.2364	6.34e-05	0.0202	GCGTGCGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	38	48	-	10.2364	6.34e-05	0.0202	GCGTGCGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	62	72	-	10.2364	6.34e-05	0.0202	GCGTGCGCGCA
TFE3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	11.1837	6.34e-05	0.135	GTCACGTGTC
TFE3	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	11.1837	6.34e-05	0.135	GTCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	11.1837	6.34e-05	0.135	GTCACGTGTC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	11.1837	6.34e-05	0.135	GTCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.1837	6.34e-05	0.135	GGCACGTGGC
TFE3	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	11.1837	6.34e-05	0.135	GTCACGTGTC
TFE3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	11.1837	6.34e-05	0.135	GTCACGTGTC
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	31	47	+	9.92857	6.35e-05	0.368	GGGTTGGCGGGAGGAGA
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	+	11.697	6.35e-05	0.285	ATCACGTGTG
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	27	41	+	9.74242	6.35e-05	0.317	TCACTTTCTTTCTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	90	104	-	9.74242	6.35e-05	0.317	TGAGCTTCAGTTTTC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	90	104	-	9.74242	6.35e-05	0.317	TGAGCTTCAGTTTTC
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	59	72	+	6.56579	6.35e-05	0.56	CGATCAGCTGTTGC
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	59	72	+	6.56579	6.35e-05	0.56	CGATCAGCTGTTGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	13	26	-	8.96552	6.35e-05	0.0349	GCCCGCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	13	26	-	8.96552	6.35e-05	0.0349	GCCCGCGCCCCCGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	27	40	-	8.96552	6.35e-05	0.0349	GGCCACACCCTCAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	27	40	-	8.96552	6.35e-05	0.0349	GGCCACACCCTCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	27	40	-	8.96552	6.35e-05	0.0349	GGCCACACCCTCAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	27	40	-	8.96552	6.35e-05	0.0349	GGCCACACCCTCAC
KLF14	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	39	52	-	8.96552	6.35e-05	0.0349	GCCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	71	84	+	8.96552	6.35e-05	0.0349	TGCTCCGCCCTCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	71	84	+	8.96552	6.35e-05	0.0349	TGCTCCGCCCTCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	78	91	+	8.96552	6.35e-05	0.0349	GGCCACACCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	91	104	+	8.96552	6.35e-05	0.0349	GATCCCGCCCTCCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	91	104	+	8.96552	6.35e-05	0.0349	GATCCCGCCCTCCA
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	6	15	+	10.1837	6.35e-05	0.228	CGGAAATCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	6	15	+	10.1837	6.35e-05	0.228	CGGAAATCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	6	15	+	10.1837	6.35e-05	0.228	CGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	6	15	+	10.1837	6.35e-05	0.228	CGGAAATCCC
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	40	-	10.6066	6.35e-05	0.174	TGCCGGAAATG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	40	-	10.6066	6.35e-05	0.174	TGCCGGAAATG
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	+	11.6452	6.35e-05	1	GGCATATGCT
Atoh1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	+	11.6452	6.35e-05	1	GGCATATGCT
LEF1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	48	62	+	8.85484	6.35e-05	1	GAAGAAGAAAGGGAG
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	30	45	-	-1.93878	6.35e-05	0.877	AGGGTCAGTGAGTCAA
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	30	45	-	-1.93878	6.35e-05	0.877	AGGGTCAGTGAGTCAA
EGR4	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	1	16	-	10.3818	6.35e-05	0.0398	CGCCGCACACGCAGCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	9	24	-	10.3818	6.35e-05	0.0398	CCCCGCCCCAGCACCA
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	39	54	+	10.3818	6.35e-05	0.0398	GCCCACCCACCCGAGC
EGR4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	24	39	-	10.3818	6.35e-05	0.0398	CGCCGCACACGCAGCC
EGR4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	76	91	+	10.3818	6.35e-05	0.0398	CGCCGCACACGCAGCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	99	114	+	10.3818	6.35e-05	0.0398	CGCCGCACACGCAGCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	39	53	-	8.47541	6.35e-05	0.0669	CGCCCCGCCCCCTCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	62	76	+	8.47541	6.35e-05	0.0669	CGCCCCGCCCCCTCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	62	76	+	8.47541	6.35e-05	0.0669	CGCCCCGCCCCCTCC
TFAP2C	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	43	54	+	11.2857	6.35e-05	0.0866	CCCCGCCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	55	66	-	11.2857	6.35e-05	0.0866	GGGCCCAGGGCA
TFAP2C	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	72	-	11.2857	6.35e-05	0.0866	CCCCGCCGGGCA
SREBF2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	11	20	+	9.72727	6.35e-05	0.254	GACACGCGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	37	46	-	9.72727	6.35e-05	0.254	GACACGCGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	95	104	-	9.72727	6.35e-05	0.254	GACACGCGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	95	104	-	9.72727	6.35e-05	0.254	GACACGCGAC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	80	94	+	9.90909	6.35e-05	0.312	AATCATGAGTCAGAA
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	45	55	-	11.1633	6.35e-05	0.306	CTTCCTAGAAA
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	45	55	-	11.1633	6.35e-05	0.306	CTTCCTAGAAA
ATF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	21	33	-	9.91803	6.35e-05	0.616	AAATGAGGCAATG
ATF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	21	33	-	9.91803	6.35e-05	0.616	AAATGAGGCAATG
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	12	24	+	10.95	6.35e-05	1	TATAGGCTAATGA
Esrra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	59	69	-	7.70909	6.35e-05	0.939	CTCAAGGGCGT
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	59	69	-	7.70909	6.35e-05	0.939	CTCAAGGGCGT
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	19	33	-	10.766	6.35e-05	0.321	AGCGATGACCTCAGC
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	55	69	-	10.766	6.35e-05	0.321	AGCGATGACCTCAGC
REST	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	79	99	-	5.29592	6.35e-05	0.22	GTCACTACCAAGGAATGCATC
REST	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	20	40	+	5.29592	6.35e-05	0.22	GTCACTACCAAGGAATGCATC
Myb	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	24	33	-	11.7049	6.36e-05	0.905	TCAGCTGTCA
POU3F1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	18	29	+	11.2169	6.36e-05	1	GTATGTAAATCT
POU3F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	18	29	+	11.2169	6.36e-05	1	GTATGTAAATCT
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	19	33	-	10.4242	6.36e-05	0.11	TCCTCGCGCCGCCCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	19	33	-	10.4242	6.36e-05	0.11	TCCTCGCGCCGCCCC
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	39	53	+	10.4242	6.36e-05	0.11	TTCTCGTGGTGTCTT
ELF1	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	99	110	+	9.2	6.36e-05	0.117	GACGCGGAAACG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	26	37	+	11.3273	6.36e-05	0.0902	TGGCTCAGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	92	103	-	11.3273	6.36e-05	0.0902	TGGCTCAGGGCG
NR2F1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	102	114	+	11.4286	6.36e-05	0.46	GTGGGGTCAGAGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	36	47	-	10.8333	6.36e-05	0.109	GGGCGTCCCCTG
HINFP	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	36	47	-	10.8333	6.36e-05	0.109	CCCCGTCCCCGC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	68	79	+	10.8333	6.36e-05	0.109	CCCCGTCCCCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	68	79	+	10.8333	6.36e-05	0.109	CCCCGTCCCCGC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	25	35	+	10.6727	6.36e-05	0.372	GTTCCAAGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	25	35	+	10.6727	6.36e-05	0.372	GTTCCAAGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	25	35	+	10.6727	6.36e-05	0.372	GTTCCAAGAAG
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	25	35	+	10.6727	6.36e-05	0.372	GTTCCAAGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	25	35	+	10.6727	6.36e-05	0.372	GTTCCAAGAAG
NFKB1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	37	49	+	2.40816	6.36e-05	0.253	AGGGGCGGCCCCT
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	95	107	+	10.7931	6.36e-05	1	CTCATTTGTATAT
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	95	107	+	10.7931	6.36e-05	1	CTCATTTGTATAT
ETV6	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	11.4423	6.36e-05	0.107	TCCGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	11.4423	6.36e-05	0.107	TCCGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	11.4423	6.36e-05	0.107	TCCGGAAGTT
ETV6	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	71	80	+	11.4423	6.36e-05	0.107	GCAGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	30	39	-	11.4423	6.36e-05	0.107	GCAGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	30	39	-	11.4423	6.36e-05	0.107	GCAGGAAGTA
Arntl	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	12	21	-	11.377	6.36e-05	0.259	CGTCACGGGC
Arntl	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	42	51	+	11.377	6.36e-05	0.259	CGTCACGGGC
Arntl	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	64	73	-	11.377	6.36e-05	0.259	CGTCACGGGC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	30	40	+	11.4082	6.36e-05	0.214	CCATGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	38	48	+	11.4082	6.36e-05	0.214	CCATGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	30	40	-	11.4082	6.36e-05	0.214	CCATGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	30	40	-	11.4082	6.36e-05	0.214	CCATGACTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	67	77	-	11.4082	6.36e-05	0.214	CCATGACTCAC
HNF4G	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	84	98	+	10.8654	6.36e-05	0.335	TTGGGGCAGGGGCCA
TCF4	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	11	20	+	12.3878	6.36e-05	0.422	CCCACCTGGA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	34	43	+	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	37	46	+	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	75	84	+	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	104	113	+	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	14	23	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	15	24	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	66	75	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	66	75	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	68	77	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	68	77	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	68	77	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	68	77	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	68	77	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	85	94	-	11.431	6.36e-05	0.107	ACAGGAAGCA
ETS1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	94	-	11.431	6.36e-05	0.107	ACAGGAAGCA
PAX5	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	23	41	+	10.6452	6.36e-05	0.149	GCGGGCAGGCGGGCGGGGT
PAX5	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	49	67	+	10.6452	6.36e-05	0.149	CTAGTCGCCGAAGCTGGAC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	48	66	-	10.6452	6.36e-05	0.149	CTAGTCGCCGAAGCTGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	48	66	-	10.6452	6.36e-05	0.149	CTAGTCGCCGAAGCTGGAC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	48	66	-	10.6452	6.36e-05	0.149	CTAGTCGCCGAAGCTGGAC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	48	66	-	10.6452	6.36e-05	0.149	CTAGTCGCCGAAGCTGGAC
Dmbx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	93	109	+	11.4737	6.36e-05	1	AGCGGCGGATTAGCCTT
Dmbx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	93	109	+	11.4737	6.36e-05	1	AGCGGCGGATTAGCCTT
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	7	27	-	9.7551	6.36e-05	0.0193	GAAAGTGGAAGAGGAAAGAGT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	19	39	-	9.7551	6.36e-05	0.0193	GAGGCAGAGAGGCGGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	19	39	-	9.7551	6.36e-05	0.0193	GAGGCAGAGAGGCGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	23	43	-	9.7551	6.36e-05	0.0193	GGGGCGGGGGGGGCGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	45	65	-	9.7551	6.36e-05	0.0193	GGAGAAGGAGGAGGGCAAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	51	71	-	9.7551	6.36e-05	0.0193	GAGGAGGGAAGGAGGGAGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	66	86	-	9.7551	6.36e-05	0.0193	CGAGGGGAGGAGGAAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	86	106	-	9.7551	6.36e-05	0.0193	GGTGGGAGAGGGGGGAAAGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	9	29	+	9.7551	6.36e-05	0.0193	AAAGAAGAGGTGAGGTGGAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	29	49	+	9.7551	6.36e-05	0.0193	CGAGGGGAGGAGGAAGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	36	56	+	9.7551	6.36e-05	0.0193	GGGGCGGGGGGGGCGGGGAGT
ZNF263	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	44	64	+	9.7551	6.36e-05	0.0193	GAGGAGGGAAGGAGGGAGGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	58	78	+	9.7551	6.36e-05	0.0193	GAAAGTGGAAGAGGAAAGAGT
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	88	108	+	9.7551	6.36e-05	0.0193	GAAAGTGGAAGAGGAAAGAGT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	60	70	+	11.4	6.36e-05	0.0551	CGCCGGGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	60	70	+	11.4	6.36e-05	0.0551	CGCCGGGGGCG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	70	80	+	11.4	6.36e-05	0.0551	AGCCCACGGCA
TFEB	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	11.3462	6.36e-05	0.167	AGCACGTGGC
TFEB	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	+	11.3462	6.36e-05	0.167	CTCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	+	11.3462	6.36e-05	0.167	CTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	+	11.3462	6.36e-05	0.167	CTCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	11.3462	6.36e-05	0.167	AGCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	11.3462	6.36e-05	0.167	AGCACGTGGC
TFEB	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	11.3462	6.36e-05	0.167	AGCACGTGGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	18	29	-	7	6.37e-05	0.2	TCTGACATCATT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	18	29	-	7	6.37e-05	0.2	TCTGACATCATT
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	86	97	+	7	6.37e-05	0.2	TCTGACATCATT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	20	33	-	6.53191	6.37e-05	0.0995	GGCCCCCAGCAGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	20	33	-	6.53191	6.37e-05	0.0995	GGCCCCCAGCAGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	38	51	-	6.53191	6.37e-05	0.0995	TCCCCCACACTGAG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	38	51	-	6.53191	6.37e-05	0.0995	TCCCCCACACTGAG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	38	51	-	6.53191	6.37e-05	0.0995	TCCCCCACACTGAG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	38	51	-	6.53191	6.37e-05	0.0995	TCCCCCACACTGAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	55	68	-	6.53191	6.37e-05	0.0995	GGCCCCCAGCAGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	55	68	-	6.53191	6.37e-05	0.0995	GGCCCCCAGCAGGG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	59	73	-	10.4727	6.37e-05	0.109	CGCAGCCCGCGGGGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	86	100	-	10.4727	6.37e-05	0.109	TGACACCTGCTGGGG
ZIC4	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	29	+	10.4727	6.37e-05	0.109	TGACACCTGCTGGGG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	103	113	+	10.7234	6.37e-05	0.222	TCTGACTCACT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	103	113	+	10.7234	6.37e-05	0.222	TCTGACTCACT
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	27	40	-	5.64286	6.37e-05	0.365	TGGCCTGGCGCCAC
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	27	40	-	5.64286	6.37e-05	0.365	TGGCCTGGCGCCAC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	13	23	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	13	23	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	45	55	-	10.9848	6.37e-05	0.0469	GGCACCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	70	80	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	70	80	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	70	80	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	70	80	-	10.9848	6.37e-05	0.0469	GGACACGCCCC
E2F2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	61	76	-	1.36585	6.37e-05	1	AAAAGGGCGCCTACAG
SP4	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	30	46	+	4.03636	6.37e-05	0.0297	GTATCCCCGCCTCCCGG
SP4	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	33	49	+	4.03636	6.37e-05	0.0297	TCCGCCCCGGCCCCACG
SP4	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	18	34	-	4.03636	6.37e-05	0.0297	GTATCCCCGCCTCCCGG
SP4	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	48	64	+	4.03636	6.37e-05	0.0297	GTATCCCCGCCTCCCGG
SP4	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	51	67	-	4.03636	6.37e-05	0.0297	GTATCCCCGCCTCCCGG
SP4	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	81	97	+	4.03636	6.37e-05	0.0297	GTATCCCCGCCTCCCGG
SP4	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	66	82	-	4.03636	6.37e-05	0.0297	TCCGCCCCGGCCCCACG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	22	36	+	9.51429	6.37e-05	0.122	CGGGGGGGAGGGGTA
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	99	113	+	9.51429	6.37e-05	0.122	CGCGGGCGGGGGGCG
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	6	13	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	11	18	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	11	18	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	16	23	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	21	28	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	39	46	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	55	62	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	55	62	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	69	76	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	87	94	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	92	99	+	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	94	101	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	94	101	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	102	109	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	102	109	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	102	109	-	11.3158	6.37e-05	0.388	AGACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	102	109	-	11.3158	6.37e-05	0.388	AGACGTGC
GCM1	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	104	114	-	10.9592	6.37e-05	0.531	GCTGCGGGTTC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	15	27	-	10.1967	6.37e-05	0.0644	GGCCGCGGGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	99	111	-	10.1967	6.37e-05	0.0644	TGCCGGGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	99	111	-	10.1967	6.37e-05	0.0644	TGCCGGGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	99	111	-	10.1967	6.37e-05	0.0644	TGCCGGGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	99	111	-	10.1967	6.37e-05	0.0644	TGCCGGGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	99	111	-	10.1967	6.37e-05	0.0644	TGCCGGGCGGGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	16	26	-	9.63793	6.37e-05	0.0825	CTGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	16	26	-	9.63793	6.37e-05	0.0825	CTGCCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	97	107	+	9.63793	6.37e-05	0.0825	CTGCCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	97	107	+	9.63793	6.37e-05	0.0825	CTGCCCCCGCG
CREB3L1	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	49	62	+	8.72727	6.37e-05	0.305	CTGCCGCGTCGTAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	53	66	-	8.72727	6.37e-05	0.305	CTGCCGCGTCGTAA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	53	66	-	8.72727	6.37e-05	0.305	CTGCCGCGTCGTAA
SP1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	25	35	+	11.0577	6.37e-05	0.0164	GGTCCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	30	40	+	11.0577	6.37e-05	0.0164	GGTCCGCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	80	90	-	11.0577	6.37e-05	0.0164	GGTCCGCCCCG
IRF1	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	38	58	-	9.1129	6.37e-05	0.187	CCTTTCATTCACTTCCCCTCC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	8	19	+	10.9342	6.37e-05	0.0324	CACACGGCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	8	19	-	10.9342	6.37e-05	0.0324	CCCACCCCCAAC
SP8	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	14	25	-	10.9342	6.37e-05	0.0324	GCCCCACCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	37	48	-	10.9342	6.37e-05	0.0324	GCCCCACCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	78	+	10.9342	6.37e-05	0.0324	GCCCCACCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	101	+	10.9342	6.37e-05	0.0324	GCCCCACCCCGC
HEY2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	-	11.0172	6.37e-05	0.199	TGCACGTGCG
HEY2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	+	11.0172	6.37e-05	0.199	TGCACGTGCG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	13	23	+	11.0328	6.37e-05	0.0647	CCGGAAGACCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	13	23	+	11.0328	6.37e-05	0.0647	CCGGAAGACCG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	45	55	+	11.0328	6.37e-05	0.0647	CCGGAAGACCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	45	55	+	11.0328	6.37e-05	0.0647	CCGGAAGACCG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	6	20	-	10.7692	6.37e-05	0.176	AGTGAGGCCAATGGG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	6	20	-	10.7692	6.37e-05	0.176	AGTGAGGCCAATGGG
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	6	20	-	10.7692	6.37e-05	0.176	AGTGAGGCCAATGGG
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	6	20	-	10.7692	6.37e-05	0.176	AGTGAGGCCAATGGG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	+	11.2182	6.37e-05	0.0702	TGCCCGAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	55	+	11.2182	6.37e-05	0.0702	CGCCTCAGGGC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	8	18	-	11.2182	6.37e-05	0.0702	CGCCTCAGGGC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	-	11.2182	6.37e-05	0.0702	TGCCCGAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	-	11.2182	6.37e-05	0.0702	TGCCCGAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	-	11.2182	6.37e-05	0.0702	TGCCCGAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	-	11.2182	6.37e-05	0.0702	TGCCCGAGGGA
EGR1	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	5	18	+	10.4038	6.37e-05	0.0244	CTTCCGCTGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	54	67	-	10.4038	6.37e-05	0.0244	CTACCGCTCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	54	67	-	10.4038	6.37e-05	0.0244	CTACCGCTCCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	54	67	-	10.4038	6.37e-05	0.0244	CTACCGCTCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	54	67	-	10.4038	6.37e-05	0.0244	CTACCGCTCCCGGC
EGR1	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	97	110	-	10.4038	6.37e-05	0.0244	CTTCCGCTGCCGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	41	50	+	11.5818	6.37e-05	0.164	CACACGTGTA
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	41	50	+	11.5818	6.37e-05	0.164	CACACGTGTA
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	41	50	+	11.5818	6.37e-05	0.164	CACACGTGTA
SCRT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	4	18	-	7.47541	6.37e-05	0.827	TTTCTACAAGTGGAA
SCRT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	4	18	-	7.47541	6.37e-05	0.827	TTTCTACAAGTGGAA
EVX2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	10.3	6.38e-05	1	AATAATTAGC
EVX2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	10.3	6.38e-05	1	GGTAATTAAG
EVX2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	10.3	6.38e-05	1	GGTAATTAAG
CTCF	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	3	21	-	8.83607	6.38e-05	0.123	CTTCCAGGAGGAGGGGCCG
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	94	112	+	8.83607	6.38e-05	0.123	CTTCCAGGAGGAGGGGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	94	112	+	8.83607	6.38e-05	0.123	CTTCCAGGAGGAGGGGCCG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	14	23	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	14	23	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	15	24	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	15	24	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	14	23	-	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	14	23	-	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	32	41	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	32	41	+	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	50	59	-	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	50	59	-	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	102	111	-	11.0122	6.38e-05	0.548	TGAATCACTG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	102	111	-	11.0122	6.38e-05	0.548	TGAATCACTG
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	34	+	11.898	6.38e-05	0.177	GGCAGCTGCCTAG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	13	25	-	11.898	6.38e-05	0.177	GCCACCTGCTGGT
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	17	29	-	11.898	6.38e-05	0.177	TTCACCTGCTACC
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	17	29	-	11.898	6.38e-05	0.177	TTCACCTGCTACC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	64	77	-	-2.18182	6.38e-05	0.752	GCAAAACAGAAAGC
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	64	77	-	-2.18182	6.38e-05	0.752	GCAAAACAGAAAGC
IRF8	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	5	18	+	-2.18182	6.38e-05	0.752	GCAAAACAGAAAGC
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	32	43	+	10.0612	6.38e-05	0.177	GTTTTGGGGTCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	32	43	+	10.0612	6.38e-05	0.177	GTTTTGGGGTCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	32	43	+	10.0612	6.38e-05	0.177	GTTTTGGGGTCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	86	97	+	10.0612	6.38e-05	0.177	GTTTTGGGGTCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	86	97	+	10.0612	6.38e-05	0.177	GTTTTGGGGTCG
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	3	19	-	10.7662	6.38e-05	1	CTAGTGTAAACAAGTCA
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	3	19	-	10.7662	6.38e-05	1	CTAGTGTAAACAAGTCA
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	60	76	+	10.7662	6.38e-05	1	CTAGTGTAAACAAGTCA
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	60	76	+	10.7662	6.38e-05	1	CTAGTGTAAACAAGTCA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	16	35	+	3.90826	6.38e-05	0.063	CACGCCCCCACCCCACCCTC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	16	35	+	3.90826	6.38e-05	0.063	CACGCCCCCACCCCACCCTC
Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	32	+	3.2439	6.38e-05	0.484	GGGATTAAAGGTCT
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	32	+	3.2439	6.38e-05	0.484	GGGATTAAAGGTCT
Rxra	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	83	96	-	3.2439	6.38e-05	0.484	GGGATTAAAGGTCT
Zfx	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	1	14	-	10.9242	6.38e-05	0.0599	CGGGCCCCGCCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	34	47	+	10.9242	6.38e-05	0.0599	CGGGCCCCGCCCTC
Zfx	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	57	70	+	10.9242	6.38e-05	0.0599	CGGGCCCCGCCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	45	58	-	10.9242	6.38e-05	0.0599	CGGGCCCCGCCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	64	77	-	10.9242	6.38e-05	0.0599	CCTCCTCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	64	77	-	10.9242	6.38e-05	0.0599	CCTCCTCCGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	64	77	-	10.9242	6.38e-05	0.0599	CCTCCTCCGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	64	77	-	10.9242	6.38e-05	0.0599	CCTCCTCCGGCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	101	114	+	10.9242	6.38e-05	0.0599	CGGGCCCCGCCCTC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	54	66	+	8.42424	6.38e-05	0.264	AGGGGAAGCCCTC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	49	61	-	8.42424	6.38e-05	0.264	AGGGGAAGCCCTC
GCM2	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	44	53	+	11.2459	6.38e-05	0.718	GATGAGGGTA
GCM2	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	48	57	-	11.2459	6.38e-05	0.718	GATGAGGGTA
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	69	-	10.7439	6.38e-05	1	TGTGATGCTAATTATT
KLF13	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	93	110	-	4.84483	6.38e-05	0.299	GGGCCAGGCCCCGCTGCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	5	15	+	11.0385	6.38e-05	0.0164	CGCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	5	15	+	11.0385	6.38e-05	0.0164	CGCCCTCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	54	64	+	11.0385	6.38e-05	0.0164	CGCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	51	61	-	11.0385	6.38e-05	0.0164	CGCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	51	61	-	11.0385	6.38e-05	0.0164	CGCCCTCCCTC
Klf12	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	43	57	+	8.45902	6.38e-05	0.0671	GGGCCCGCCCAATCC
Klf12	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	58	72	-	8.45902	6.38e-05	0.0671	GGGCCCGCCCAATCC
KLF14	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	42	55	+	8.94828	6.39e-05	0.0349	TCCCACGCCCCGCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	60	73	+	8.94828	6.39e-05	0.0349	GTCTCCGCCCACCC
KLF14	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	60	73	-	8.94828	6.39e-05	0.0349	TCCCACGCCCCGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	22	+	10.4426	6.39e-05	0.0589	GCCCCGGGGGGGC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	+	10.4426	6.39e-05	0.0589	TGCCTTTAAGGCG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	6	20	+	6.08989	6.39e-05	0.315	GGCCCCAAGAGTGCC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	91	105	-	6.08989	6.39e-05	0.315	GGCCCCAAGAGTGCC
TBX21	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	56	65	+	10.9636	6.39e-05	1	CAGGTGTGAG
TBX21	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	107	+	10.9636	6.39e-05	1	AGGGTGTGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	9.95968	6.39e-05	0.0499	AGCACGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	9.95968	6.39e-05	0.0499	AGCACGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	9.95968	6.39e-05	0.0499	AGCACGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	9.95968	6.39e-05	0.0499	AGCACGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	9.95968	6.39e-05	0.0499	CGCACGTGCT
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	9.95968	6.39e-05	0.0499	CGCACGTGCT
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	9.95968	6.39e-05	0.0499	CGCACGTGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	9.95968	6.39e-05	0.0499	CGCACGTGCT
ZIC3	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	32	46	-	8.27143	6.39e-05	0.113	TGACCCCCGTCGCTC
ZIC3	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	69	83	+	8.27143	6.39e-05	0.113	TGACCCCCGTCGCTC
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	18	29	-	11	6.39e-05	0.217	GCCGCCCCCCGC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	21	32	-	11	6.39e-05	0.217	CGCGACGACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	49	60	-	11	6.39e-05	0.217	CGCGACCTCCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	49	60	-	11	6.39e-05	0.217	CGCGACCTCCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	49	60	-	11	6.39e-05	0.217	CGCGACCTCCCC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	49	60	-	11	6.39e-05	0.217	CGCGACCTCCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	49	60	-	11	6.39e-05	0.217	CGCGACCTCCCC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	68	79	-	11	6.39e-05	0.217	GCCGCCCCCCGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	68	79	-	11	6.39e-05	0.217	GCCGCCCCCCGC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	83	94	+	11	6.39e-05	0.217	CGCGACGACCCC
SRY	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	46	54	+	10.9111	6.39e-05	1	GGAAACAAT
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	33	47	+	10.5345	6.39e-05	0.0144	CCCCCACCCCGGAGC
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	23	37	-	10.5345	6.39e-05	0.0144	CTCCTTCCCCCTCGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	53	67	+	10.5345	6.39e-05	0.0144	CCCCTTCCCCCACCC
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	78	92	+	10.5345	6.39e-05	0.0144	CTCCTTCCCCCTCGC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	17	28	+	11.2653	6.39e-05	0.0866	GCCCCCAGGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	38	-	11.2653	6.39e-05	0.0866	GCCCCCAGGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	-	11.2653	6.39e-05	0.0866	TGCCTCCGGCCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	-	11.2653	6.39e-05	0.0866	TGCCTCCGGCCG
KLF5	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	6	15	+	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	23	32	+	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	28	37	+	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	28	37	+	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	45	54	+	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	54	63	-	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	54	63	-	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	61	70	-	11.2653	6.39e-05	0.0237	TCTCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	83	92	-	11.2653	6.39e-05	0.0237	TCTCCGCCCT
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
FLI1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.1915	6.39e-05	0.12	TCCGGAAGCC
Creb5	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	18	29	+	8.94545	6.39e-05	0.226	GCTGACGTCAGG
Creb5	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	18	29	-	8.94545	6.39e-05	0.226	TGTGACGTCAGA
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	26	37	-	8.94545	6.39e-05	0.226	GCTGACGTCAGG
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	26	37	-	8.94545	6.39e-05	0.226	GCTGACGTCAGG
Creb5	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	33	44	-	8.94545	6.39e-05	0.226	GCTGACGTCAGG
Creb5	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	71	82	-	8.94545	6.39e-05	0.226	GCTGACGTCAGG
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	93	104	-	8.94545	6.39e-05	0.226	GCTGACGTCAGG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	1	11	-	10.7273	6.39e-05	0.209	GGATGAGTAAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	1	11	-	10.7273	6.39e-05	0.209	GGATGAGTAAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	1	11	-	10.7273	6.39e-05	0.209	GGATGAGTAAT
FOSL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	1	11	-	10.7273	6.39e-05	0.209	GGATGAGTAAT
USF2	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	56	+	11.4286	6.39e-05	0.152	CTCACGTGGCA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	2	15	-	5.63265	6.39e-05	0.365	TGGCCTCGGGCAAA
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	2	15	-	5.63265	6.39e-05	0.365	TGGCCTCGGGCAAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	72	85	+	5.63265	6.39e-05	0.365	TGACAGGCAGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	72	85	+	5.63265	6.39e-05	0.365	TGACAGGCAGCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	72	85	+	5.63265	6.39e-05	0.365	TGACAGGCAGCCAG
NFKB1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	54	66	-	2.38776	6.39e-05	0.253	GAGGGCTTCCCCT
NFKB1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	49	61	+	2.38776	6.39e-05	0.253	GAGGGCTTCCCCT
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.1.0	35	44	-	11.3065	6.39e-05	1	AGCATTCCTT
TEAD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.0.0	35	44	-	11.3065	6.39e-05	1	AGCATTCCTT
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	70	79	-	11.3065	6.39e-05	1	CAAATTCCAC
TEAD1	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	15	24	+	11.3065	6.39e-05	1	CAAATTCCAC
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	80	89	+	11.3065	6.39e-05	1	CAAATTCCAC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	57	71	+	10.8269	6.39e-05	0.45	AGGGGACAGTGACTC
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	60	70	-	11.4364	6.39e-05	0.0638	CGCCTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	60	70	-	11.4364	6.39e-05	0.0638	CGCCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	60	70	-	11.4364	6.39e-05	0.0638	CGCCTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	60	70	-	11.4364	6.39e-05	0.0638	CGCCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	60	70	-	11.4364	6.39e-05	0.0638	CGCCTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	12	22	+	11.4364	6.39e-05	0.0638	TGTCTTCCGGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	12	22	+	11.4364	6.39e-05	0.0638	TGTCTTCCGGC
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	43	57	+	10.9279	6.4e-05	0.187	ATGGGGAAGAGGGAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	43	57	+	10.9279	6.4e-05	0.187	ATGGGGAAGAGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	43	57	+	10.9279	6.4e-05	0.187	ATGGGGAAGAGGGAA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	21	35	-	10.9279	6.4e-05	0.187	ATGGGGAAGAGGGAA
FEV	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	11.5	6.4e-05	0.137	ACAGGAAGTC
FEV	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	11.5	6.4e-05	0.137	ACAGGAAGTC
Ar	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	7	23	+	6.81034	6.4e-05	0.882	GGGCACAGTGTCTGCTT
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.0.0	29	45	+	6.81034	6.4e-05	0.882	TGTGACATGCTGTACCC
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627596..2627710,-__2070.1.1.0	29	45	+	6.81034	6.4e-05	0.882	TGTGACATGCTGTACCC
Ar	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	85	101	-	6.81034	6.4e-05	0.882	TGTGACATGCTGTACCC
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	85	101	-	6.81034	6.4e-05	0.882	TGTGACATGCTGTACCC
FOXC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	20	30	-	11.52	6.4e-05	1	AATGAAAATAT
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	20	30	-	11.52	6.4e-05	1	AATGAAAATAT
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	84	95	-	10.7308	6.4e-05	0.293	GGAAATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	84	95	-	10.7308	6.4e-05	0.293	GGAAATGGCTGC
Crx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	50	60	-	11.3621	6.4e-05	1	AAGGGGATTTA
FOSL1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	33	43	+	10.8	6.4e-05	0.225	ATTGAGTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	72	82	-	10.8	6.4e-05	0.225	ATTGAGTCAGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	72	82	-	10.8	6.4e-05	0.225	ATTGAGTCAGG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	14	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	14	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	26	35	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	26	35	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	55	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	55	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	55	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	66	+	10.4894	6.4e-05	0.0926	GCCGGAAGGA
ELK1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
ELK1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	10.4894	6.4e-05	0.0926	ACAGGAAGTG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	13	27	-	10.4909	6.4e-05	0.315	AGGGAGGGAGAGCGA
PRDM1	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	96	110	+	10.4909	6.4e-05	0.315	GGAGAGTGAAAGACT
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	86	102	-	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	86	102	-	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	86	102	-	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	86	102	-	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	86	102	-	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
RARA(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	13	29	+	3.39344	6.4e-05	0.563	CGGGCAGGAAAATGTCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	79	96	-	-13.6842	6.4e-05	0.0527	GGCGGGCGGGCAGGCATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	79	96	-	-13.6842	6.4e-05	0.0527	GGCGGGCGGGCAGGCATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	79	96	-	-13.6842	6.4e-05	0.0527	GGCGGGCGGGCAGGCATG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	79	96	-	-13.6842	6.4e-05	0.0527	GGCGGGCGGGCAGGCATG
INSM1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	37	48	+	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	56	67	+	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	48	59	-	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	52	63	-	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	90	101	+	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	90	101	+	10.051	6.4e-05	0.177	GGCCAGCGGCCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	93	104	-	10.051	6.4e-05	0.177	GGCCAGCGGCCG
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	17	31	-	11.1549	6.4e-05	0.341	GTTCGGTAAACAGAT
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	17	31	-	11.1549	6.4e-05	0.341	GTTCGGTAAACAGAT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	-	11.25	6.4e-05	0.0758	CCCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	-	11.25	6.4e-05	0.0758	CCCCTCGGGCA
JUND(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	18	32	+	10.7447	6.4e-05	0.321	GGAAGTGATGCCAGA
JUND(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	74	88	-	10.7447	6.4e-05	0.321	GGAAGTGATGCCAGA
ELF4	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	46	57	+	9.22951	6.4e-05	0.111	GAAGCGGAAGCA
Stat5a::Stat5b	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	50	60	+	11.4898	6.41e-05	0.363	CCTTCCCAGAG
Stat5a::Stat5b	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	55	65	-	11.4898	6.41e-05	0.363	CCTTCCCAGAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	47	57	-	11.6364	6.41e-05	0.721	ATCCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	47	57	-	11.6364	6.41e-05	0.721	ATCCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	47	57	-	11.6364	6.41e-05	0.721	ATCCACTCAGA
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	47	57	-	11.6364	6.41e-05	0.721	ATCCACTCAGA
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	94	105	-	9.3871	6.41e-05	1	AGTGTTCAAAGG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	15	28	-	6.51064	6.41e-05	0.0995	CCCCACCCGCCGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	58	71	+	6.51064	6.41e-05	0.0995	CCCCCCCCGCGCCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	73	+	6.51064	6.41e-05	0.0995	CGCCCCCTGCCACG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	97	110	-	6.51064	6.41e-05	0.0995	GCCGCCCCGCGGCC
SP8	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	20	31	-	10.9211	6.41e-05	0.0324	GCACCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	42	53	-	10.9211	6.41e-05	0.0324	GTAACGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	42	53	-	10.9211	6.41e-05	0.0324	GTAACGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	62	73	+	10.9211	6.41e-05	0.0324	GTAACGCCCCCT
SP8	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	54	65	-	10.9211	6.41e-05	0.0324	CACACCCCCAGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	70	81	+	10.9211	6.41e-05	0.0324	GCACCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	70	81	+	10.9211	6.41e-05	0.0324	GCACCGCCCCGC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
BCL6B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	88	104	+	-16.2571	6.41e-05	0.94	TTCTTTCTTGAAATGCC
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	27	40	+	10.9577	6.41e-05	0.268	GAAAAGAGGAGGAT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	27	40	+	10.9577	6.41e-05	0.268	GAAAAGAGGAGGAT
SPIC	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	74	87	-	10.9577	6.41e-05	0.268	AAAAAGAGGAGGAG
TFAP4	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	+	10.9091	6.41e-05	0.655	GACAGCTGTG
TFAP4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	+	10.9091	6.41e-05	0.655	GACAGCTGTG
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	-	10.9091	6.41e-05	0.655	GACAGCTGTG
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	-	10.9091	6.41e-05	0.655	GACAGCTGTG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	70	80	+	9.62069	6.41e-05	0.0827	CCGCCGACTCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	70	80	+	9.62069	6.41e-05	0.0827	CCGCCGACTCA
ZNF410	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	11	27	-	-2.8	6.41e-05	1	GCCAACACACAATGATC
ZNF410	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	11	27	-	-2.8	6.41e-05	1	GCCAACACACAATGATC
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	33	46	-	5.62245	6.41e-05	0.365	TGACAAGGGGCCAG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	69	82	+	5.62245	6.41e-05	0.365	TGACAAGGGGCCAG
EGR3	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	33	47	+	6.55172	6.41e-05	0.041	TTACGCCTGCGCTCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	56	70	+	6.55172	6.41e-05	0.041	CGCCGGCCCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	56	70	+	6.55172	6.41e-05	0.041	CGCCGGCCCCGCCCT
EGR3	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	45	59	-	6.55172	6.41e-05	0.041	CGCCGGCCCCGCCCT
EGR3	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	68	82	-	6.55172	6.41e-05	0.041	TTACGCCTGCGCTCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	97	111	+	6.55172	6.41e-05	0.041	CGCCGGCCCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	86	100	-	6.55172	6.41e-05	0.041	CAGCGCCCACTCGCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	94	108	-	6.55172	6.41e-05	0.041	CAGCGCCCACACGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	94	108	-	6.55172	6.41e-05	0.041	CAGCGCCCACACGCG
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	33	42	-	11.3115	6.41e-05	0.259	CGCCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	33	42	-	11.3115	6.41e-05	0.259	CGCCACGTGC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	33	42	-	11.3115	6.41e-05	0.259	CGCCACGTGC
Arntl	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	54	63	+	11.3115	6.41e-05	0.259	CGCCACGTGC
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	52	61	-	11.3115	6.41e-05	0.259	CGCCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	52	61	-	11.3115	6.41e-05	0.259	CGCCACGTGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	6	21	-	10.3636	6.41e-05	0.0398	ACCCCCCCCCCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	6	21	-	10.3636	6.41e-05	0.0398	ACCCCCCCCCCCCCTC
EGR4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	27	42	-	10.3636	6.41e-05	0.0398	CCCCGCCCCCTCCTCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	31	46	-	10.3636	6.41e-05	0.0398	CCCCACCCCCGCTTCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	31	46	-	10.3636	6.41e-05	0.0398	CCCCACCCCCGCTTCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	31	46	-	10.3636	6.41e-05	0.0398	CCCCACCCCCGCTTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	31	46	-	10.3636	6.41e-05	0.0398	CCCCACCCCCGCTTCC
EGR4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	33	48	-	10.3636	6.41e-05	0.0398	CCCCGCCCCTGCCCGA
EGR4	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	49	64	+	10.3636	6.41e-05	0.0398	CTCCCCCCGCCCCTTT
EGR4	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	36	51	-	10.3636	6.41e-05	0.0398	CCCCGCCCCCTCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	64	79	+	10.3636	6.41e-05	0.0398	CCCCGCCCCCTCCTCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	64	79	+	10.3636	6.41e-05	0.0398	CCCCGCCCCCTCCTCC
EGR4	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	51	66	-	10.3636	6.41e-05	0.0398	CTCCCCCCGCCCCTTT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	67	82	+	10.3636	6.41e-05	0.0398	CCCCGCCCCTGCCCGA
EGR4	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	69	84	+	10.3636	6.41e-05	0.0398	CCCCACCCCCGCTTCC
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	46	60	+	9.5	6.41e-05	0.122	GCGGGGGAGAGGCCT
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	46	60	+	9.5	6.41e-05	0.122	GCGGGGGAGAGGCCT
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	46	60	+	9.5	6.41e-05	0.122	GCGGGGGAGAGGCCT
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	46	60	+	9.5	6.41e-05	0.122	GCGGGGGAGAGGCCT
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	46	60	+	9.5	6.41e-05	0.122	GCGGGGGAGAGGCCT
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	62	76	+	9.5	6.41e-05	0.122	GCGGGGCGGAGTCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	62	76	+	9.5	6.41e-05	0.122	GCGGGGCGGAGTCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	62	76	+	9.5	6.41e-05	0.122	GCGGGGCGGAGTCCG
MNT	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	+	12.1515	6.41e-05	0.312	AACACGTGGA
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	-	12.1515	6.41e-05	0.312	AACACGTGGA
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	-	12.1515	6.41e-05	0.312	AACACGTGGA
MYF6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	-	10.6667	6.41e-05	1	GACAGGTGTC
MYF6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	-	10.6667	6.41e-05	1	GACAGGTGTC
MYF6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	-	10.6667	6.41e-05	1	GACAGGTGTC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	9	19	-	10.6034	6.41e-05	0.0219	GCCCCGCCCAA
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	9	19	-	10.6034	6.41e-05	0.0219	GCCCCGCCCAA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	9	19	-	10.6034	6.41e-05	0.0219	GCCCCGCCCAA
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	37	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	50	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	31	41	-	10.6034	6.41e-05	0.0219	AGCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	31	41	-	10.6034	6.41e-05	0.0219	AGCCCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	70	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	70	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	84	+	10.6034	6.41e-05	0.0219	AGCCCGCCCAC
KLF16	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	65	75	-	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	96	106	+	10.6034	6.41e-05	0.0219	GCCCCGCCCAA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	109	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	109	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	109	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	109	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	109	+	10.6034	6.41e-05	0.0219	CTCCCACCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	104	114	-	10.6034	6.41e-05	0.0219	CTCCCACCCCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	22	39	-	-13.7105	6.41e-05	0.0527	GGGAGGAAGCCCGCCGGA
Hoxb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	43	58	-	11.2078	6.41e-05	1	TCGGTAATTGGCCTAG
Hoxb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	43	58	-	11.2078	6.41e-05	1	TCGGTAATTGGCCTAG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	8	28	+	9.09677	6.41e-05	0.187	GCGGGCTTTCCCTCTCACTCT
IRF1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	76	96	+	9.09677	6.41e-05	0.187	TGGTCCTTTCGCTTTTAAGGA
ESR1	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	94	110	+	-0.0151515	6.41e-05	0.514	TAGCTCACTATGACCGA
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	18	27	-	11.3659	6.41e-05	0.472	ATCACATCAT
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	4	15	+	3.53448	6.42e-05	0.192	CGGCACGTCCTG
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	4	15	+	3.53448	6.42e-05	0.192	CGGCACGTCCTG
HES7	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	13	24	-	3.53448	6.42e-05	0.192	CGGCACGTCCTG
HES7	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	91	102	+	3.53448	6.42e-05	0.192	CGGCACGTCCTG
HES7	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	100	111	-	3.53448	6.42e-05	0.192	CGGCACGTCCTG
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	82	94	-	9.82857	6.42e-05	0.731	CAGGCAGTTGTTC
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	19	28	+	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	19	28	+	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	19	28	+	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	19	28	+	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	104	113	-	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	104	113	-	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	104	113	-	11.9672	6.42e-05	0.281	AATGACGTCT
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	104	113	-	11.9672	6.42e-05	0.281	AATGACGTCT
MLX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	+	10.2571	6.42e-05	0.289	ATCACGAGAT
MLX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	+	10.2571	6.42e-05	0.289	ATCACGAGAT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	10.2571	6.42e-05	0.289	TCCACGTGAC
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	10.2571	6.42e-05	0.289	TCCACGTGAC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	10.2571	6.42e-05	0.289	TCCACGTGAC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	10.2571	6.42e-05	0.289	TCCACGTGAC
E2F6	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	18	28	+	11.3103	6.42e-05	0.0691	AGGTGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	40	50	+	11.3103	6.42e-05	0.0691	GGGTGGGAGGT
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	40	50	+	11.3103	6.42e-05	0.0691	GGGTGGGAGGT
E2F6	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	41	51	+	11.3103	6.42e-05	0.0691	AGGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	56	66	+	11.3103	6.42e-05	0.0691	AAGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	56	66	+	11.3103	6.42e-05	0.0691	AAGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	73	83	+	11.3103	6.42e-05	0.0691	AGGTGGGAGGA
E2F6	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	73	83	+	11.3103	6.42e-05	0.0691	AAGAGGGAGAG
E2F6	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	92	102	+	11.3103	6.42e-05	0.0691	AGGTGGGAGGA
E2F6	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	92	102	+	11.3103	6.42e-05	0.0691	AGGTGGGAGGA
NFKB1	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	3	15	+	2.36735	6.42e-05	0.253	AGGGAGCTCCCCA
RUNX1	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	96	106	-	11.3621	6.42e-05	0.28	GCCTGTGGCCA
POU2F1	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	79	90	+	11.25	6.42e-05	1	CATATGCAAAGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	5	22	+	-13.7237	6.42e-05	0.0527	GGAAGGGCGGCAGCCACA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	77	94	+	-13.7237	6.42e-05	0.0527	GGAAGGGCGGCAGCCACA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	21	38	-	-13.7237	6.42e-05	0.0527	GGAAGGGCGGCAGCCACA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	21	38	-	-13.7237	6.42e-05	0.0527	GGAAGGGCGGCAGCCACA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	93	110	-	-13.7237	6.42e-05	0.0527	GGAAGGGCGGCAGCCACA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	58	72	+	8.44262	6.42e-05	0.0673	CGCGACGCCCTCCGC
Klf12	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	93	107	-	8.44262	6.42e-05	0.0673	AGCCGCGCCCTCCCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	+	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	-	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	+	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	+	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	-	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	-	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	+	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	-	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	+	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	+	10.0345	6.42e-05	0.0554	TGCCTGCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	-	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	-	10.0345	6.42e-05	0.0554	AGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	101	113	+	10.0345	6.42e-05	0.0554	GGCCCGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	101	113	+	10.0345	6.42e-05	0.0554	GGCCCGGGCGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	101	113	+	10.0345	6.42e-05	0.0554	GGCCCGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	101	113	+	10.0345	6.42e-05	0.0554	GGCCCGGGCGGGA
CEBPB	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	58	67	+	11.66	6.42e-05	0.821	CTTACACAAC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	31	40	-	11.4231	6.42e-05	0.108	TGCGGAAGCG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	31	40	-	11.4231	6.42e-05	0.108	TGCGGAAGCG
Hes1	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	9.99301	6.42e-05	0.108	ACCACGTGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	+	11.2	6.42e-05	0.0702	CCCCTGGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	+	11.2	6.42e-05	0.0702	CCCCTGGGGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	+	11.2	6.42e-05	0.0702	GGCCTCGGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	21	31	-	11.2	6.42e-05	0.0702	CGCCCACGGCT
E2F4	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	5	15	-	11.0345	6.42e-05	0.0496	CGGCGGGGAAA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	25	35	+	11.0345	6.42e-05	0.0496	CGGCGGGGAAA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	54	68	+	10.8462	6.42e-05	0.335	CGGGCGCAGAGGCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	54	68	+	10.8462	6.42e-05	0.335	CGGGCGCAGAGGCCG
ETV2	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	3	13	+	10.5902	6.42e-05	0.174	AAGAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	70	80	+	10.5902	6.42e-05	0.174	AAGAGGAAATG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	70	80	+	10.5902	6.42e-05	0.174	AAGAGGAAATG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	75	85	+	10.5902	6.42e-05	0.174	AAGAGGAAATG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	73	83	-	10.5902	6.42e-05	0.174	AAGAGGAAATG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	73	83	-	10.5902	6.42e-05	0.174	AAGAGGAAATG
HES5	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	36	47	-	2.91379	6.42e-05	0.298	CGGCAAGTGGCT
HOXD12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	20	30	+	10.9836	6.42e-05	1	AACCGTAAAAC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	11	23	-	10.1639	6.42e-05	0.0644	GGCCTTTACGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	11	23	-	10.1639	6.42e-05	0.0644	GGCCTTTACGGCA
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	53	65	+	10.1639	6.42e-05	0.0644	TGCCGCGCAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	45	57	-	10.1639	6.42e-05	0.0644	GGCCTTTACGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	45	57	-	10.1639	6.42e-05	0.0644	GGCCTTTACGGCA
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	50	62	-	10.1639	6.42e-05	0.0644	TGCCGCGCAGGCG
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	108	+	11.898	6.42e-05	0.184	AGCAGGTGGGG
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	108	+	11.898	6.42e-05	0.184	AGCAGGTGGGG
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	34	48	+	8.25714	6.43e-05	0.113	CGCCTCCTCCCGCGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	34	48	+	8.25714	6.43e-05	0.113	CGCCTCCTCCCGCGT
ZIC3	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	38	52	+	8.25714	6.43e-05	0.113	CGCCTCCCGCAGTAC
ZIC3	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	67	81	-	8.25714	6.43e-05	0.113	CGCCTCCTCCCGCGT
MAFG	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	52	72	+	9.89796	6.43e-05	1	CTACTGCTGAGTCATTTAAAT
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	49	60	-	10.3443	6.43e-05	0.135	GAGGCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	49	60	-	10.3443	6.43e-05	0.135	GAGGCGGAAGCA
EHF	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	62	-	10.3443	6.43e-05	0.135	CCTCCGGAAGTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	19	32	-	10.9091	6.43e-05	0.0599	CCGGCCCCGCCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	19	32	-	10.9091	6.43e-05	0.0599	CCGGCCCCGCCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	19	32	-	10.9091	6.43e-05	0.0599	CCGGCCCCGCCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	19	32	-	10.9091	6.43e-05	0.0599	CCGGCCCCGCCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	19	32	-	10.9091	6.43e-05	0.0599	CCGGCCCCGCCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	73	86	+	10.9091	6.43e-05	0.0599	GTTCCTGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	73	86	+	10.9091	6.43e-05	0.0599	GTTCCTGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	72	85	-	10.9091	6.43e-05	0.0599	ACAACCAAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	72	85	-	10.9091	6.43e-05	0.0599	ACAACCAAGGCCTG
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	12	25	+	10.3846	6.43e-05	0.0245	CCCCCTCCTCTGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	29	42	-	10.3846	6.43e-05	0.0245	GTCCCGCCCTCGGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	29	42	-	10.3846	6.43e-05	0.0245	GTCCCGCCCTCGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr5:63461626..63461740,+__1091.1.0.0	50	63	+	10.3846	6.43e-05	0.0245	GCATCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	57	70	+	10.3846	6.43e-05	0.0245	CAGCCACCCTCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	74	87	-	10.3846	6.43e-05	0.0245	GGTCCTCCTCCACA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	74	87	-	10.3846	6.43e-05	0.0245	GGTCCTCCTCCACA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	74	87	-	10.3846	6.43e-05	0.0245	GGTCCTCCTCCACA
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	74	87	-	10.3846	6.43e-05	0.0245	GGTCCTCCTCCACA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	84	97	-	10.3846	6.43e-05	0.0245	CGGACGCCGCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	84	97	-	10.3846	6.43e-05	0.0245	CGGACGCCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	84	97	-	10.3846	6.43e-05	0.0245	CGGACGCCGCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	97	110	-	10.3846	6.43e-05	0.0245	CTGCCGCTGCCGCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	7	20	+	8.93103	6.43e-05	0.0349	TACCACTCCCCTAA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	11	24	-	8.93103	6.43e-05	0.0349	GTCCACCCCCACCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	11	24	-	8.93103	6.43e-05	0.0349	GTCCACCCCCACCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	11	24	-	8.93103	6.43e-05	0.0349	GTCCACCCCCACCC
ZIC4	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	37	51	-	10.4545	6.43e-05	0.109	TGCGCCCTGCGGCCC
ZIC4	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	36	50	+	10.4545	6.43e-05	0.109	GGCCCCCAGCGGTTG
ZIC4	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	64	78	+	10.4545	6.43e-05	0.109	TGCGCCCTGCGGCCC
Klf1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	3	13	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	6	16	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	7	17	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	7	17	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	11	21	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	11	21	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	1	11	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	1	11	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	12	22	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	12	22	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	12	22	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	12	22	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	6	16	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	6	16	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	6	16	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	17	27	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	17	27	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	18	28	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	18	28	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	9	19	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	10	20	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	21	31	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	11	21	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	11	21	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	12	22	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	22	32	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	12	22	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	12	22	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	22	32	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	14	24	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	16	26	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	16	26	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	16	26	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	16	26	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	27	37	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	17	27	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	27	37	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	27	37	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	27	37	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	17	27	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	18	28	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	18	28	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	18	28	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	18	28	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	19	29	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	29	39	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	19	29	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	30	40	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	30	40	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	30	40	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	30	40	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	31	41	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	31	41	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	21	31	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	21	31	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	21	31	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	21	31	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	32	42	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	22	32	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	32	42	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	32	42	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	32	42	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	23	33	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	23	33	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	23	33	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	23	33	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	34	44	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	24	34	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	35	45	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	26	36	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	26	36	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	28	38	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	28	38	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	28	38	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	28	38	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	29	39	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	29	39	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	40	50	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	42	52	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	32	42	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	33	43	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	44	54	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	45	55	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	45	55	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	36	46	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	46	56	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	36	46	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	36	46	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	47	57	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	47	57	+	10.9394	6.43e-05	0.0469	AGCCTCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	48	58	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	48	58	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	38	48	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	48	58	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	50	60	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	40	50	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	43	53	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	43	53	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	43	53	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	43	53	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	43	53	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	48	58	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	48	58	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	62	72	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	62	72	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	63	73	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	55	65	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	65	75	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	56	66	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	56	66	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	56	66	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	56	66	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	58	68	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	59	69	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	59	69	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	69	79	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	59	69	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	59	69	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	69	79	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	69	79	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	61	71	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	63	73	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	65	75	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	76	86	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	70	80	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	71	81	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	73	83	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	76	86	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	87	97	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	88	98	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	78	88	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	93	103	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	95	105	+	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	87	97	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	102	112	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	102	112	-	10.9394	6.43e-05	0.0469	CGCCCCGCCCC
HOXA2	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	17	26	-	10.3585	6.43e-05	1	TCTCATTAGC
HOXA2	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	46	55	+	10.3585	6.43e-05	1	TCTCATTAGC
RUNX3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	27	36	-	11.6346	6.43e-05	0.439	TGACCGCAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	12	32	-	9.73469	6.43e-05	0.0194	AAGAGAGGGAGGGAAAGAATG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	20	40	-	9.73469	6.43e-05	0.0194	GGAAAAGGGGAGGGGGGTCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	20	40	-	9.73469	6.43e-05	0.0194	GGAAAAGGGGAGGGGGGTCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	32	52	-	9.73469	6.43e-05	0.0194	AGATGAGATTTGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	68	88	-	9.73469	6.43e-05	0.0194	AGAACAGGGAAGAGGGAAAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	68	88	-	9.73469	6.43e-05	0.0194	AGAACAGGGAAGAGGGAAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	88	108	-	9.73469	6.43e-05	0.0194	GGGGCGGGGGGTAGAGAAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	19	39	+	9.73469	6.43e-05	0.0194	GGGTGGGGGTGGGGGTGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	25	45	+	9.73469	6.43e-05	0.0194	GGGTGGGGGTGGGGGTGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	31	51	+	9.73469	6.43e-05	0.0194	GGGTGGGGGTGGGGGTGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	49	69	+	9.73469	6.43e-05	0.0194	GAAGGCGGACTTGGGATAGGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	66	86	+	9.73469	6.43e-05	0.0194	GAAGGAAGCCCGGGAATGAGA
REL	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	67	76	+	11.2323	6.43e-05	0.326	GGGGAATACC
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	74	83	+	10.6016	6.43e-05	0.956	TTTTTCCACA
TFAP2B	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	43	54	+	11.3091	6.43e-05	0.0902	TGCCCCGCGCCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	67	78	+	11.3091	6.43e-05	0.0902	CGCCCTGAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	67	78	+	11.3091	6.43e-05	0.0902	CGCCCTGAGCCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	14	-	11.3091	6.43e-05	0.0902	CCCCCTCGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	7	18	-	11.3091	6.43e-05	0.0902	TGCCTCAAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	7	18	-	11.3091	6.43e-05	0.0902	TGCCTCAAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	47	58	-	11.3091	6.43e-05	0.0902	CGCCCTGAGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	47	58	-	11.3091	6.43e-05	0.0902	CGCCCTGAGCCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	61	72	-	11.3091	6.43e-05	0.0902	TGCCCCGCGCCA
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	-	8.25	6.43e-05	0.196	TGCACGTGAT
SP4	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	10	26	-	4	6.43e-05	0.0299	CCCGCCCCACCCCCGCC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	26	42	-	4	6.43e-05	0.0299	CCAGCCCCACCTCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	26	42	-	4	6.43e-05	0.0299	CCAGCCCCACCTCCCTC
SP4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	37	53	-	4	6.43e-05	0.0299	CACGAGCCGCCCACCCT
SP4	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	37	53	-	4	6.43e-05	0.0299	CACGAGCCGCCCACCCT
SP4	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	63	79	+	4	6.43e-05	0.0299	CACGAGCCGCCCACCCT
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	58	72	+	10.9189	6.43e-05	0.187	CTGGGCGAGAGGGTT
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	91	105	+	10.9189	6.43e-05	0.187	CTGGGCGAGAGGGTT
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	10	24	-	10.9189	6.43e-05	0.187	CTGGGCGAGAGGGTT
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	43	57	-	10.9189	6.43e-05	0.187	CTGGGCGAGAGGGTT
Nr2f6	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	50	63	-	8.81818	6.43e-05	0.391	GAGGTCGAGTGTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	52	65	+	8.81818	6.43e-05	0.391	GAGGTCGAGTGTCA
Nr2f6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	52	65	+	8.81818	6.43e-05	0.391	GAGGTCGAGTGTCA
CEBPA	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	31	41	-	11.6122	6.43e-05	0.79	ATTTCACAACG
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	97	108	+	0.538462	6.43e-05	0.932	TGACAAATGACA
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	24	32	+	9.91379	6.43e-05	0.311	ATGAATCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	26	34	-	9.91379	6.43e-05	0.311	ATGAATCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	105	113	-	9.91379	6.43e-05	0.311	ATGAATCAT
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr5:87969108..87969222,-__713.1.0.0	40	53	+	3.9697	6.43e-05	0.379	GCCCCCCCAAAAAC
E2F7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	52	65	-	-4.42623	6.43e-05	1	AGCTCGCACCAAAA
E2F7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	52	65	-	-4.42623	6.43e-05	1	AGCTCGCACCAAAA
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	73	-	10.7636	6.43e-05	1	CGTGACGTAACA
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	73	89	-	-5.49091	6.44e-05	1	GGGGCCGACTGAGGACA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	73	89	-	-5.49091	6.44e-05	1	GGGGCCGACTGAGGACA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	38	54	-	9.89796	6.44e-05	0.368	GGGGCTCGGGGAGGTCA
SCRT1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	73	87	+	7.44262	6.44e-05	0.827	GATCAACAGGGTGAA
SCRT1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	93	107	+	7.44262	6.44e-05	0.827	GATCAACAGGGTGAA
SCRT1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	8	22	-	7.44262	6.44e-05	0.827	GATCAACAGGGTGAA
SCRT1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	28	42	-	7.44262	6.44e-05	0.827	GATCAACAGGGTGAA
Klf4	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	8	17	-	10.8265	6.44e-05	0.0231	GGGGAGTGGT
Klf4	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	26	35	+	10.8265	6.44e-05	0.0231	GGGGAGTGGT
Klf4	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	80	89	-	10.8265	6.44e-05	0.0231	GGGGAGTGGT
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	-	11.6212	6.44e-05	0.285	TACACGTGAC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	22	36	+	8.78689	6.44e-05	0.463	GTGAGTCTGCGCAGT
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	22	36	+	8.78689	6.44e-05	0.463	GTGAGTCTGCGCAGT
MAF::NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	22	36	+	8.78689	6.44e-05	0.463	GTGAGTCTGCGCAGT
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	22	36	+	8.78689	6.44e-05	0.463	GTGAGTCTGCGCAGT
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	19	34	+	6.12857	6.44e-05	0.361	TGATGTCATGGGAACT
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	19	34	+	6.12857	6.44e-05	0.361	TGATGTCATGGGAACT
ESX1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.2083	6.44e-05	1	CCCAATTAAA
ESX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.2083	6.44e-05	1	CCCAATTAAA
ESX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.2083	6.44e-05	1	CCCAATTAAA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	26	41	-	-3.98276	6.44e-05	1	TCAGCCTAAAAGGTCA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	67	82	+	-3.98276	6.44e-05	1	TCAGCCTAAAAGGTCA
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	108	-	11.0674	6.44e-05	1	CTGCCAGCTGGT
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	31	45	+	10.5172	6.44e-05	0.0145	CTTCCTCCCTCCCCT
SP2	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	24	38	-	10.5172	6.44e-05	0.0145	CCTCCTCCCCGCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	52	66	-	10.5172	6.44e-05	0.0145	TCTCCTCCCACTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	53	67	-	10.5172	6.44e-05	0.0145	GGGCCGCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	53	67	-	10.5172	6.44e-05	0.0145	GGGCCGCCCCCTCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	53	67	-	10.5172	6.44e-05	0.0145	GGGCCGCCCCCTCCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	86	98	+	10.4262	6.44e-05	0.0589	TCCCGGCCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	-	10.4262	6.44e-05	0.0589	TCCCCCAGCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	-	10.4262	6.44e-05	0.0589	TCCCCCAGCGGCG
NOTO	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	73	82	+	11.08	6.44e-05	1	GCTCATTAAG
NOTO	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	73	82	+	11.08	6.44e-05	1	GCTCATTAAG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	23	34	+	10.7115	6.44e-05	0.293	CAGCATGGCCCC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	23	34	+	10.7115	6.44e-05	0.293	CAGCATGGCCCC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	23	34	+	10.7115	6.44e-05	0.293	CAGCATGGCCCC
YY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	23	34	+	10.7115	6.44e-05	0.293	CAGCATGGCCCC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	18	29	+	6.97959	6.44e-05	0.201	AATGATGTCAGA
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	18	29	+	6.97959	6.44e-05	0.201	AATGATGTCAGA
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	86	97	-	6.97959	6.44e-05	0.201	AATGATGTCAGA
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	47	65	+	10.7097	6.44e-05	0.674	TGCCTTTTAATGACTTTTC
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	95	107	-	10.8852	6.44e-05	0.359	GTGTCTGTCTGTT
MAX	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	+	12.0769	6.44e-05	0.298	TCCACGTGGT
MAX	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	12.0769	6.44e-05	0.298	CGCACGTGAC
MAX	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	12.0769	6.44e-05	0.298	CGCACGTGAC
MAX	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	+	12.0769	6.44e-05	0.298	TCCACGTGGT
MAX	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	-	12.0769	6.44e-05	0.298	TCCACGTGGT
HINFP	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	31	42	+	10.803	6.44e-05	0.109	GAGCGTGCGCGA
HINFP	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	28	39	-	10.803	6.44e-05	0.109	CGGCCTCCGCCG
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	33	44	-	10.803	6.44e-05	0.109	CCACCTCCGCTT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	33	44	-	10.803	6.44e-05	0.109	CCACCTCCGCTT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	70	81	+	10.803	6.44e-05	0.109	CAGGCTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	70	81	+	10.803	6.44e-05	0.109	CAGGCTCCGCGT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	70	81	+	10.803	6.44e-05	0.109	CAGGCTCCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	70	81	+	10.803	6.44e-05	0.109	CAGGCTCCGCGT
HINFP	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	76	87	+	10.803	6.44e-05	0.109	CGGCCTCCGCCG
HINFP	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	73	84	-	10.803	6.44e-05	0.109	GAGCGTGCGCGA
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	82	92	+	11.6379	6.45e-05	0.902	TCCTGTTGTCT
Foxo1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	82	92	+	11.6379	6.45e-05	0.902	TCCTGTTGTCT
Foxo1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	23	33	-	11.6379	6.45e-05	0.902	TCCTGTTGTCT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	33	47	-	6.53448	6.45e-05	0.041	GACCGCTCACCCAAT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	33	47	-	6.53448	6.45e-05	0.041	GACCGCTCACCCAAT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	33	47	-	6.53448	6.45e-05	0.041	GACCGCTCACCCAAT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	33	47	-	6.53448	6.45e-05	0.041	GACCGCTCACCCAAT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	33	47	-	6.53448	6.45e-05	0.041	GACCGCTCACCCAAT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	62	76	+	6.53448	6.45e-05	0.041	CCCCACCCACCCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	62	76	+	6.53448	6.45e-05	0.041	CCCCACCCACCCCCC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	69	83	-	6.53448	6.45e-05	0.041	CCCCACCCACCCCCC
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
ETV1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	11.4545	6.45e-05	0.118	CCCGGAAGCA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	81	98	-	-13.7763	6.45e-05	0.0528	GGAGGGAGGCGGGGCGGA
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	64	-	10.602	6.45e-05	0.325	GCGCACGTGCT
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	64	-	10.602	6.45e-05	0.325	GCGCACGTGCT
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	64	-	10.602	6.45e-05	0.325	GCGCACGTGCT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	64	-	10.602	6.45e-05	0.325	GCGCACGTGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	12	+	11.2551	6.45e-05	0.0866	AGCCTCAGGGGG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	70	81	+	11.2551	6.45e-05	0.0866	TGCCCTGGGGTT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	70	81	+	11.2551	6.45e-05	0.0866	TGCCCTGGGGTT
SPI1	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	30	43	+	3.07273	6.45e-05	0.22	TGAAAAGGGAACTT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	20	31	+	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	20	31	+	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	17	28	-	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	17	28	-	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	30	41	-	10.9079	6.45e-05	0.0324	ACCCCCCCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	39	50	-	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	50	61	-	10.9079	6.45e-05	0.0324	GAAACGCCTCCT
SP8	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	65	76	+	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	74	85	+	10.9079	6.45e-05	0.0324	ACCCCCCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	74	85	+	10.9079	6.45e-05	0.0324	GCTCCTCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	74	85	+	10.9079	6.45e-05	0.0324	GCTCCTCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	74	85	+	10.9079	6.45e-05	0.0324	GCTCCTCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	74	85	+	10.9079	6.45e-05	0.0324	GCTCCTCCCACT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	63	74	-	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	63	74	-	10.9079	6.45e-05	0.0324	GCCGCGCCCCCA
Sox6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	95	104	-	11.9143	6.45e-05	0.813	GCATTGTCTG
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	95	104	-	11.9143	6.45e-05	0.813	GCATTGTCTG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	32	46	-	10.3939	6.45e-05	0.111	CCCTCGCGCGGGGCG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	69	83	+	10.3939	6.45e-05	0.111	CCCTCGCGCGGGGCG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	65	78	+	11.3077	6.45e-05	0.223	TCATTGTGACTCAG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	51	64	-	11.3077	6.45e-05	0.223	TCATTGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	95	108	-	11.3077	6.45e-05	0.223	GCATGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	95	108	-	11.3077	6.45e-05	0.223	GCATGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	95	108	-	11.3077	6.45e-05	0.223	GGGTTATGATTCAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	41	51	-	10.6364	6.45e-05	0.372	TCTCCGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	41	51	-	10.6364	6.45e-05	0.372	TCTCCGGGAAG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	58	71	+	6.48936	6.45e-05	0.0995	GGCCACGCGCTGAG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	58	71	+	6.48936	6.45e-05	0.0995	GGCCACGCGCTGAG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	83	96	-	6.48936	6.45e-05	0.0995	AGCCGCCTGCAGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	45	59	+	9.48571	6.45e-05	0.122	GGCGTGCAGAGGGCG
NR2C2	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	56	70	-	9.48571	6.45e-05	0.122	GGCGTGCAGAGGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	+	10.0172	6.45e-05	0.0554	AGCCGGGCGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	80	-	10.0172	6.45e-05	0.0554	CGCCCCCCCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	80	-	10.0172	6.45e-05	0.0554	CGCCCCCCCGGCC
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	45	58	-	11.3966	6.45e-05	0.322	ATTCTGAGAAGCAG
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	45	58	-	11.3966	6.45e-05	0.322	ATTCTGAGAAGCAG
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	86	99	+	11.3966	6.45e-05	0.322	ATTCTGAGAAGCAG
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	86	99	+	11.3966	6.45e-05	0.322	ATTCTGAGAAGCAG
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	35	-	11.4082	6.45e-05	0.152	CCCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	35	-	11.4082	6.45e-05	0.152	CCCACGTGCCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	54	+	11.4082	6.45e-05	0.152	CCCACGTGCCC
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	54	+	11.4082	6.45e-05	0.152	CCCACGTGCCC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	17	30	+	8.31148	6.45e-05	0.185	GGCCACCCACGAGC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	17	30	+	8.31148	6.45e-05	0.185	GGCCACCCACGAGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	17	30	+	8.31148	6.45e-05	0.185	GGCCACCCACGAGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	17	30	+	8.31148	6.45e-05	0.185	GGCCACCCACGAGC
GLIS2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	42	55	+	8.31148	6.45e-05	0.185	GACCCCTCGGGGTG
GLIS2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	60	73	-	8.31148	6.45e-05	0.185	GACCCCTCGGGGTG
ELF3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	16	28	+	8.41379	6.45e-05	0.167	CGCGCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	16	28	+	8.41379	6.45e-05	0.167	AAGCCAGAAGTGG
ELF3	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	50	62	+	8.41379	6.45e-05	0.167	CGCGCGGAAGTGA
ELF3	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	53	65	-	8.41379	6.45e-05	0.167	CGCGCGGAAGTGA
ELF3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	87	99	-	8.41379	6.45e-05	0.167	CGCGCGGAAGTGA
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	29	46	+	5.2844	6.46e-05	0.626	TGAAAATCAAACTTTGAC
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	29	46	+	5.2844	6.46e-05	0.626	TGAAAATCAAACTTTGAC
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	63	80	-	5.2844	6.46e-05	0.626	TGAAAATCAAACTTTGAC
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	63	80	-	5.2844	6.46e-05	0.626	TGAAAATCAAACTTTGAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	39	59	+	9.08065	6.46e-05	0.187	TCGCCGTTCCTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	49	69	+	9.08065	6.46e-05	0.187	TTGTTGTTTTGTTTTTTTGTT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	86	96	-	11.2931	6.46e-05	0.0691	AGGAGGGAGCT
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	86	96	-	11.2931	6.46e-05	0.0691	AGGAGGGAGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	85	95	+	11.2931	6.46e-05	0.0691	TGGAGGGAGAT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	85	95	+	11.2931	6.46e-05	0.0691	TGGAGGGAGAT
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	7	18	-	8.2844	6.46e-05	0.855	TGACAGTTCTCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	7	18	-	8.2844	6.46e-05	0.855	TGACAGTTCTCA
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
FEV	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.4808	6.46e-05	0.137	TCCGGAAGCC
NHLH1	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	66	75	-	10.9138	6.46e-05	0.136	CGCAGGTGTG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	3	12	+	10.898	6.46e-05	0.243	GGTCACATGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	3	12	+	10.898	6.46e-05	0.243	GGTCACATGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	25	34	-	10.898	6.46e-05	0.243	GGTCACATGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	25	34	-	10.898	6.46e-05	0.243	GGTCACATGG
Rarg(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	54	70	+	-5.50909	6.46e-05	1	AAGGGCACGGAAGTCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	71	87	+	-5.50909	6.46e-05	1	GCGGTCGCCAGGGTTCG
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	71	87	+	-5.50909	6.46e-05	1	GCGGTCGCCAGGGTTCG
SNAI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	34	42	-	11.5581	6.46e-05	0.488	CGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	34	42	-	11.5581	6.46e-05	0.488	CGCAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	53	61	+	11.5581	6.46e-05	0.488	CGCAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	53	61	+	11.5581	6.46e-05	0.488	CGCAGGTGG
SNAI2	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	73	81	+	11.5581	6.46e-05	0.488	CGCAGGTGG
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	77	87	+	11.1818	6.46e-05	0.0702	TGCCCACGGCA
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	28	38	-	11.1818	6.46e-05	0.0702	TGCCCACGGCA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	24	34	+	11.4694	6.46e-05	0.363	TTTCCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	24	34	+	11.4694	6.46e-05	0.363	TTTCCCCGGAA
Stat5a::Stat5b	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	55	65	+	11.4694	6.46e-05	0.363	TTTCCCCGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	50	60	-	11.4694	6.46e-05	0.363	TTTCCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	50	60	-	11.4694	6.46e-05	0.363	TTTCCCCGGAA
Stat5a::Stat5b	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	81	91	-	11.4694	6.46e-05	0.363	TTTCCCCGGAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	19	35	-	3.98182	6.46e-05	0.0299	TCCGCCCCACCCCTTCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	19	35	-	3.98182	6.46e-05	0.0299	TCCGCCCCACCCCTTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	19	35	-	3.98182	6.46e-05	0.0299	TCCGCCCCACCCCTTCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	19	35	-	3.98182	6.46e-05	0.0299	TCCGCCCCACCCCTTCG
SP4	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	40	56	+	3.98182	6.46e-05	0.0299	TGCGCCCCGCCCCGCGA
SP4	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	59	75	-	3.98182	6.46e-05	0.0299	TGCGCCCCGCCCCGCGA
ELF1	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	36	47	-	9.16364	6.46e-05	0.118	GAGACGGAAGTC
ELF1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	51	62	+	9.16364	6.46e-05	0.118	GGCCAGGAAGTA
ELF1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	53	64	-	9.16364	6.46e-05	0.118	GGCCAGGAAGTA
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	68	79	+	9.16364	6.46e-05	0.118	GAGACGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	68	79	+	9.16364	6.46e-05	0.118	GAGACGGAAGTC
OLIG3	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	22	31	+	11.4138	6.46e-05	1	ACAATATGCT
OLIG3	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	84	93	-	11.4138	6.46e-05	1	ACAATATGCT
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	62	71	+	11.2525	6.46e-05	0.182	TAAGGGGGAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	9	22	+	5.59184	6.46e-05	0.365	GGGCTCCAGGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	9	22	+	5.59184	6.46e-05	0.365	GGGCTCCAGGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	9	22	+	5.59184	6.46e-05	0.365	GGGCTCCAGGCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	9	22	+	5.59184	6.46e-05	0.365	GGGCTCCAGGCCAG
HNF1B	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	33	45	-	10.1818	6.47e-05	1	GTTAACGTTTAAT
HNF1B	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	70	82	+	10.1818	6.47e-05	1	GTTAACGTTTAAT
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	-	9.36364	6.47e-05	0.362	AGTTTCTGTGGAAACT
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	-	9.36364	6.47e-05	0.362	AGTTTCTGTGGAAACT
HOXB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	+	10.04	6.47e-05	1	CGTCATTAGC
HOXB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	+	10.04	6.47e-05	1	CGTCATTAGC
HOXB3	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	-	10.04	6.47e-05	1	CGTCATTAGC
HOXB3	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	+	10.04	6.47e-05	1	CGTCATTAGC
HOXB3	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	-	10.04	6.47e-05	1	CGTCATTAGC
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	7	17	+	10.1818	6.47e-05	0.0205	GCCCGTGCCCA
NRF1	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	14	24	+	10.1818	6.47e-05	0.0205	GCGGTCGCGCG
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	23	33	+	10.1818	6.47e-05	0.0205	GCCCGTGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	40	50	-	10.1818	6.47e-05	0.0205	CCGCGTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	40	50	-	10.1818	6.47e-05	0.0205	CCGCGTGCCCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	82	92	-	10.1818	6.47e-05	0.0205	GCCCGTGCCCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	98	108	-	10.1818	6.47e-05	0.0205	GCCCGTGCCCA
RXRG	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	34	47	+	1.93617	6.47e-05	0.48	GGGGTCAGGGGTGC
RXRG	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	68	81	-	1.93617	6.47e-05	0.48	GGGGTCAGGGGTGC
RAX	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	-	11.1017	6.47e-05	1	GTTAATTAAT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	86	100	+	9.69697	6.47e-05	0.317	TGAGTTCTTTTTTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	6	19	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	6	19	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	6	19	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	6	19	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	6	19	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	4	17	-	8.91379	6.47e-05	0.0349	CCCCCCGCCCCCAA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	15	28	-	8.91379	6.47e-05	0.0349	CCCCCCGCCCCCGT
KLF14	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	31	44	+	8.91379	6.47e-05	0.0349	CGCTGCGCCCCCAG
KLF14	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	55	68	+	8.91379	6.47e-05	0.0349	CCCCACGCCCTCCC
KLF14	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	43	56	-	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	59	72	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	59	72	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	59	72	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	59	72	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	59	72	+	8.91379	6.47e-05	0.0349	CCTCCCGCCCACCT
KLF14	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	47	60	-	8.91379	6.47e-05	0.0349	CCCCACGCCCTCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	68	81	+	8.91379	6.47e-05	0.0349	GCCCCCGCCTCCCT
KLF14	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	71	84	-	8.91379	6.47e-05	0.0349	CGCTGCGCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	98	111	+	8.91379	6.47e-05	0.0349	CCCCCCGCCCCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	98	111	+	8.91379	6.47e-05	0.0349	CCCCCCGCCCCCAA
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	20	33	+	10.9437	6.47e-05	0.269	CTAAACAGGAAGCT
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	20	33	+	10.9437	6.47e-05	0.269	CTAAACAGGAAGCT
HOXC10	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	29	38	-	11.6727	6.47e-05	1	GTCGTAAAGC
HOXC10	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	77	86	+	11.6727	6.47e-05	1	GTCGTAAAGC
INSM1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	17	28	+	10.0204	6.47e-05	0.177	CGCCAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	14	25	-	10.0204	6.47e-05	0.177	CGCCAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	14	25	-	10.0204	6.47e-05	0.177	CGCCAGGGGGCG
INSM1	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	27	38	+	10.0204	6.47e-05	0.177	CGCCAGGGGGCG
INSM1	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	77	88	-	10.0204	6.47e-05	0.177	CGCCAGGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	+	11.2308	6.47e-05	0.0758	CCCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	+	11.2308	6.47e-05	0.0758	CCCCTGGGGCA
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	96	109	+	6.5	6.47e-05	0.56	TTAACAGCTGTGGT
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	96	109	+	6.5	6.47e-05	0.56	TTAACAGCTGTGGT
IRF7	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	15	28	+	8.79032	6.47e-05	0.731	CTCAAAATGAAACA
IRF7	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	87	100	-	8.79032	6.47e-05	0.731	CTCAAAATGAAACA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	15	27	+	10.1475	6.47e-05	0.0644	GGCCGCGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	8	20	-	10.1475	6.47e-05	0.0644	GGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	8	20	-	10.1475	6.47e-05	0.0644	GGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	8	20	-	10.1475	6.47e-05	0.0644	GGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	8	20	-	10.1475	6.47e-05	0.0644	GGCCGTGGGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	32	44	+	10.1475	6.47e-05	0.0644	GCCCCTGTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	67	79	-	10.1475	6.47e-05	0.0644	GGCCGCGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	67	79	-	10.1475	6.47e-05	0.0644	GGCCGCGGGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	80	-	10.1475	6.47e-05	0.0644	CGCCCCCCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	80	-	10.1475	6.47e-05	0.0644	CGCCCCCCCGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	77	89	-	10.1475	6.47e-05	0.0644	GCCCCTGTGGGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	5	15	-	9.58621	6.47e-05	0.083	CGTCCCACGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	5	15	-	9.58621	6.47e-05	0.083	CGTCCCACGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	5	15	-	9.58621	6.47e-05	0.083	CGTCCCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	5	15	-	9.58621	6.47e-05	0.083	CGTCCCACGCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	3	18	-	10.3455	6.47e-05	0.0398	CCCCGCCCAAGCAGCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	3	18	-	10.3455	6.47e-05	0.0398	CCCCGCCCAAGCAGCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	3	18	-	10.3455	6.47e-05	0.0398	CCCCGCCCAAGCAGCG
EGR4	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	33	48	-	10.3455	6.47e-05	0.0398	CTCGGCCCGCGCGCTC
EGR4	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	97	112	+	10.3455	6.47e-05	0.0398	CCCCGCCCAAGCAGCG
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	3	22	+	3.86239	6.47e-05	0.0637	CCACCCCTCGCCCCCGCAGA
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	12	21	+	10.7523	6.47e-05	0.0553	CCCCCCCATC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	12	21	+	10.7523	6.47e-05	0.0553	CCCCCCCATC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	15	24	+	10.7523	6.47e-05	0.0553	CCCCCCCATC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	73	82	-	10.7523	6.47e-05	0.0553	CCCCCCCATC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	73	82	-	10.7523	6.47e-05	0.0553	CCCCCCCATC
HES7	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	4	15	+	3.51724	6.47e-05	0.192	TGTCACGTGTCC
HES7	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	100	111	-	3.51724	6.47e-05	0.192	TGTCACGTGTCC
Zfx	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	81	94	-	10.8939	6.47e-05	0.0603	GGGGCACGGGCCTA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	51	+	10.5918	6.47e-05	0.325	GGGCACGCGGA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	51	+	10.5918	6.47e-05	0.325	GGGCACGCGGA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	17	29	-	8.37879	6.47e-05	0.264	TGGGAAACCACCC
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	48	60	-	8.37879	6.47e-05	0.264	TGGGAAACCACCC
NFKB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	48	60	-	8.37879	6.47e-05	0.264	TGGGAAACCACCC
PLAG1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	48	61	-	5.7449	6.47e-05	0.0723	CGGGCGCTGAGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	25	38	+	5.7449	6.47e-05	0.0723	CGGGCGCTGTGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	54	67	+	5.7449	6.47e-05	0.0723	CGGGCGCTGAGGGG
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	49	59	+	11.0192	6.47e-05	0.0166	TGCCCGCCTCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	52	62	-	11.0192	6.47e-05	0.0166	TGCCCGCCTCT
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	37	46	-	11	6.47e-05	0.199	GGCACGAGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	37	46	-	11	6.47e-05	0.199	GGCACGAGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	79	88	-	11	6.47e-05	0.199	GGCACGAGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	79	88	-	11	6.47e-05	0.199	GGCACGAGCC
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	9	19	-	11.3818	6.47e-05	0.0551	CGCCCCACGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	9	19	-	11.3818	6.47e-05	0.0551	CGCCCCACGCA
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	21	31	-	11.3818	6.47e-05	0.0551	CGCCCACGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	55	65	+	11.3818	6.47e-05	0.0551	CGCCGGCGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	66	76	+	11.3818	6.47e-05	0.0551	CGCCGGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	66	76	+	11.3818	6.47e-05	0.0551	CGCCGGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	66	76	+	11.3818	6.47e-05	0.0551	CGCCGGCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	66	76	+	11.3818	6.47e-05	0.0551	CGCCGGCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	83	93	-	11.3818	6.47e-05	0.0551	CGCCGCAGGGG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	96	106	+	11.3818	6.47e-05	0.0551	CGCCCCACGCA
ELK3	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	11.2069	6.47e-05	0.119	ACCGGAAACT
ELK3	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	11.2069	6.47e-05	0.119	ACCGGAAACT
Znf423	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	9	23	-	6.04494	6.48e-05	0.315	CGCCCCTTGCGTGCC
Znf423	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	92	106	+	6.04494	6.48e-05	0.315	CGCCCCTTGCGTGCC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	96	113	+	-13.8289	6.48e-05	0.053	GGCAGCAGGGCAGCAGTG
MAF::NFE2	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	38	52	+	8.77049	6.48e-05	0.463	ATGAATAAGCAACAA
NFYB	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	8	22	-	10.7308	6.48e-05	0.178	GCGGGCTCCAATCGG
Rfx1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	25	38	+	10.2069	6.48e-05	0.287	CTTCCCCAGGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	16	29	-	10.2069	6.48e-05	0.287	GCCACCTGGGAAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	16	29	-	10.2069	6.48e-05	0.287	GCCACCTGGGAAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	77	90	-	10.2069	6.48e-05	0.287	CTTCCCCAGGAAAC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	73	89	+	-5.16854	6.48e-05	1	GAGGGTCAGAGTTCACG
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	73	89	+	-5.16854	6.48e-05	1	GAGGGTCAGAGTTCACG
Nr2f6	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	2	15	-	8.80303	6.48e-05	0.391	AAGCACATAGGTCA
Nr2f6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	2	15	-	8.80303	6.48e-05	0.391	AAGCACATAGGTCA
Nr2f6	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	50	63	-	8.80303	6.48e-05	0.391	GCGGTCAGAGGGTA
Nr2f6	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	52	65	+	8.80303	6.48e-05	0.391	GCGGTCAGAGGGTA
Nr2f6	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	101	114	+	8.80303	6.48e-05	0.391	AAGCACATAGGTCA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	19	37	+	10.6129	6.48e-05	0.149	CCAGGCTGTCAGGCGGAAC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	19	37	+	10.6129	6.48e-05	0.149	CCAGGCTGTCAGGCGGAAC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	19	37	+	10.6129	6.48e-05	0.149	CCAGGCTGTCAGGCGGAAC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	19	37	+	10.6129	6.48e-05	0.149	CCAGGCTGTCAGGCGGAAC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	11	29	-	10.6129	6.48e-05	0.149	GAGGCCAAGAGGGCAGGGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	2	12	-	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	103	113	+	11.3818	6.48e-05	0.0641	GGGTTTCCGGG
EGR1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	18	31	-	10.3654	6.48e-05	0.0247	CATCCGCCCCTACA
EGR1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	67	80	+	10.3654	6.48e-05	0.0247	TCCTCTCCTCCTCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	84	97	+	10.3654	6.48e-05	0.0247	CATCCGCCCCTACA
PKNOX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	88	99	-	3.22951	6.48e-05	0.598	ACACAGGTGTCT
PKNOX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	88	99	-	3.22951	6.48e-05	0.598	ACACAGGTGTCT
ETV2	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	31	-	10.5738	6.48e-05	0.174	AACCGGAAGAG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	38	-	10.5738	6.48e-05	0.174	AACCGGAAGAG
ETV2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	52	62	+	10.5738	6.48e-05	0.174	AAGCGGAAGCC
ETV2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	53	63	-	10.5738	6.48e-05	0.174	AAGCGGAAGCC
EOMES	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	58	70	+	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	68	80	+	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	68	80	+	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	35	47	-	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	45	57	-	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	45	57	-	11.2073	6.48e-05	1	TAAGTGTGAAGCA
EOMES	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	59	71	-	11.2073	6.48e-05	1	TGGGTGTGAAGGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	15	29	-	6.51724	6.48e-05	0.0412	CCCCACCCCCCCGCG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	85	-	10.4098	6.48e-05	0.0589	CCCCCCGCCGGCA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	65	82	+	-13.8421	6.48e-05	0.053	GGGGCGAGGGCAGCCAGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	69	86	-	-13.8421	6.48e-05	0.053	GGGAACTAGAAAGGAAGG
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	72	80	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	72	80	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	72	80	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	95	103	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	95	103	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	95	103	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	95	103	+	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	38	46	-	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	38	46	-	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	38	46	-	10.1053	6.48e-05	0.215	TCGCCCGCA
THAP1	WILDTYPE__Lincrna.noflip.NA__chrX:45710927..45711041,-__936.1.0.0	86	94	-	10.1053	6.48e-05	0.215	TCGCCCGCA
TEAD4	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	11	20	+	11.3065	6.48e-05	0.799	CAAATTCCAG
TEAD4	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	42	51	+	11.3065	6.48e-05	0.799	CAAATTCCAG
TEAD4	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	64	73	-	11.3065	6.48e-05	0.799	CAAATTCCAG
TEAD4	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	95	104	-	11.3065	6.48e-05	0.799	CAAATTCCAG
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	59	69	+	10.5816	6.48e-05	0.325	GGCCACGCGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	59	69	+	10.5816	6.48e-05	0.325	GGCCACGCGGA
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	+	9.69091	6.48e-05	0.254	ATCACATGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	+	9.69091	6.48e-05	0.254	ATCACATGAT
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	-	9.69091	6.48e-05	0.254	ATCACATGAT
TEAD1	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	46	55	+	11.2903	6.48e-05	1	CACATTCCCT
ID4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	9	18	-	12.1311	6.48e-05	0.389	CACACCTGGA
ID4	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	80	89	+	12.1311	6.48e-05	0.389	CACACCTGGA
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	97	106	+	12.1311	6.48e-05	0.389	CACACCTGGA
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	97	106	+	12.1311	6.48e-05	0.389	CACACCTGGA
ID4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	97	106	+	12.1311	6.48e-05	0.389	CACACCTGGA
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	97	106	+	12.1311	6.48e-05	0.389	CACACCTGGA
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	27	37	-	10.9184	6.49e-05	0.531	GGTGCTGGCAC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	27	37	-	10.9184	6.49e-05	0.531	GGTGCTGGCAC
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	8	21	-	3.93939	6.49e-05	0.379	GACCCCCCCCCCAG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	8	21	-	3.93939	6.49e-05	0.379	GACCCCCCCCCCAG
SP3	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	49	59	+	11.1057	6.49e-05	0.0231	GCCGCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	33	43	-	11.1057	6.49e-05	0.0231	ACACCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	33	43	-	11.1057	6.49e-05	0.0231	ACACCGCCCAC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	10	24	-	10.4364	6.49e-05	0.109	CGCCCCCCGGTGACG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	10	24	-	10.4364	6.49e-05	0.109	CGCCCCCCGGTGACG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	10	24	-	10.4364	6.49e-05	0.109	CGCCCCCCGGTGACG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	10	24	-	10.4364	6.49e-05	0.109	CGCCCCCCGGTGACG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	10	24	-	10.4364	6.49e-05	0.109	CGCCCCCCGGTGACG
ZIC4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	88	102	-	10.4364	6.49e-05	0.109	TCCGCCCCGCAGAGG
ZIC4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	13	27	+	10.4364	6.49e-05	0.109	TCCGCCCCGCAGAGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	50	64	+	10.4364	6.49e-05	0.109	TACGACCCGCCGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	50	64	+	10.4364	6.49e-05	0.109	TACGACCCGCCGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	50	64	+	10.4364	6.49e-05	0.109	TACGACCCGCCGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	50	64	+	10.4364	6.49e-05	0.109	TACGACCCGCCGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	86	100	+	10.4364	6.49e-05	0.109	TGCAACCCGCTGCCC
PAX9	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	52	68	+	0.672727	6.49e-05	0.501	TGGCACGCTCGGGCGGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	22	+	10	6.49e-05	0.0554	GCCCCGGGGGGGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	-	10	6.49e-05	0.0554	GCCCTCGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	31	-	10	6.49e-05	0.0554	ACCCCTCCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	31	-	10	6.49e-05	0.0554	ACCCCTCCAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	31	-	10	6.49e-05	0.0554	ACCCCTCCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	31	-	10	6.49e-05	0.0554	ACCCCTCCAGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	34	46	-	10	6.49e-05	0.0554	GCCCTTTGGGGCG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	69	81	+	10	6.49e-05	0.0554	GCCCTTTGGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	+	10	6.49e-05	0.0554	GCCCTCGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	+	10	6.49e-05	0.0554	GCCCTCGCGGGCT
NR2C2	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	4	18	-	9.47143	6.49e-05	0.122	TCGGGGGAGGGGGGA
NR2C2	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	97	111	+	9.47143	6.49e-05	0.122	TCGGGGGAGGGGGGA
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.5818	6.49e-05	0.129	CCCGGAAATG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.5818	6.49e-05	0.129	CCCGGAAATG
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.5818	6.49e-05	0.129	ACAGGAAGTT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	67	84	+	-13.8553	6.49e-05	0.053	GGGGAGAATCGAGGACGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	22	35	+	5.73469	6.49e-05	0.0723	GGGGGTGTCGCGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	45	58	+	5.73469	6.49e-05	0.0723	GAGGCCGGGTGGGG
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	16	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	16	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	16	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	16	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	16	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	8	17	+	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	8	17	+	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	8	17	+	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	8	17	+	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	34	43	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	34	43	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	26	35	-	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	26	35	-	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	51	60	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	51	60	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	51	60	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	51	60	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	51	60	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	51	60	+	11.2245	6.49e-05	0.0237	ATCCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	46	55	-	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	69	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	69	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	69	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	69	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	69	+	11.2245	6.49e-05	0.0237	CTCCCGCCCA
KLF5	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	55	64	-	11.2245	6.49e-05	0.0237	ATCCCGCCCC
MNX1	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	37	46	+	10.5821	6.49e-05	1	TATAATTAAA
MLX	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	10.2429	6.49e-05	0.29	CGCACGTGAT
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	10.2429	6.49e-05	0.29	CGCACGTGAT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	26	36	-	11.0172	6.49e-05	0.0497	GGGCGGGGACT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	26	36	-	11.0172	6.49e-05	0.0497	GGGCGGGGACT
E2F4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	65	75	+	11.0172	6.49e-05	0.0497	GGGCGGGGACT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	66	76	+	11.0172	6.49e-05	0.0497	CCGCGCGAACG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	66	76	+	11.0172	6.49e-05	0.0497	CCGCGCGAACG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	66	76	+	11.0172	6.49e-05	0.0497	CCGCGCGAACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	66	76	+	11.0172	6.49e-05	0.0497	CCGCGCGAACG
SP2	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	9	23	+	10.5	6.49e-05	0.0146	CTCCCTCCTCACCAC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	13	27	+	10.5	6.49e-05	0.0146	CCTCCGCTCCCCTCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	30	44	+	10.5	6.49e-05	0.0146	GCTCCGCCCTGGGCA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	43	57	+	10.5	6.49e-05	0.0146	CTCCCTCCCTATCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	43	57	+	10.5	6.49e-05	0.0146	CTCCCTCCCTATCCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	43	57	+	10.5	6.49e-05	0.0146	CTCCCTCCCTATCCG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	43	57	+	10.5	6.49e-05	0.0146	CTCCCTCCCTATCCG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	53	67	+	10.5	6.49e-05	0.0146	TCTCCTCCCCACCGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	53	67	+	10.5	6.49e-05	0.0146	TCTCCTCCCCACCGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	53	67	+	10.5	6.49e-05	0.0146	TCTCCTCCCCACCGC
SP2	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	48	62	-	10.5	6.49e-05	0.0146	TCTCCTCCCCACCGC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	51	65	-	10.5	6.49e-05	0.0146	CCTCCGCTCCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	51	65	-	10.5	6.49e-05	0.0146	CCTCCGCTCCCCTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	60	74	-	10.5	6.49e-05	0.0146	GCACCGCCCATGGCT
FOXF2	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	81	94	-	11.1111	6.49e-05	1	GAGAAATAAACAAG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	21	31	+	11.4182	6.49e-05	0.141	AACAGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	23	33	+	11.4182	6.49e-05	0.141	AACAGGAAGCT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	23	33	+	11.4182	6.49e-05	0.141	AACAGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	33	43	+	11.4182	6.49e-05	0.141	AACAGGAAGCT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	33	43	+	11.4182	6.49e-05	0.141	AACAGGAAGCT
ELF5	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	86	96	+	11.4182	6.49e-05	0.141	TCCCGGAAGGA
ELF5	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	37	47	-	11.4182	6.49e-05	0.141	ACCAGGAAGGT
ELF5	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	72	82	-	11.4182	6.49e-05	0.141	AACAGGAAGCT
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	6	22	+	3.34426	6.49e-05	0.563	AGGACAACCGGAGGCGA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	6	22	+	3.34426	6.49e-05	0.563	AGGACAACCGGAGGCGA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	54	70	+	3.34426	6.49e-05	0.563	AGGACAACCGGAGGCGA
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	54	70	+	3.34426	6.49e-05	0.563	AGGACAACCGGAGGCGA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	54	70	+	3.34426	6.49e-05	0.563	AGGACAACCGGAGGCGA
HINFP	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	10	21	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	13	24	-	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	76	87	-	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	76	87	-	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	91	102	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	91	102	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	95	106	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	95	106	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	95	106	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	95	106	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	98	109	+	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	94	105	-	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	100	111	-	10.7879	6.49e-05	0.109	CCGGCTCCGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	23	37	+	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	23	37	+	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
ZIC3	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	54	68	+	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	47	61	-	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	47	61	-	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
ZIC3	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	78	92	-	8.22857	6.49e-05	0.113	CACCCCCTCCCGCTG
EHF	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	43	-	10.3279	6.49e-05	0.135	GAGCCGGAAGGG
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	59	70	+	10.3279	6.49e-05	0.135	CGGCCGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	59	70	+	10.3279	6.49e-05	0.135	CGGCCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	59	70	+	10.3279	6.49e-05	0.135	CGGCCGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	59	70	+	10.3279	6.49e-05	0.135	CGGCCGGAAGTT
EHF	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	80	-	10.3279	6.49e-05	0.135	CGGCCGGAAGTT
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	+	11.2909	6.49e-05	0.0907	TGCCTCTGGGCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	93	+	11.2909	6.49e-05	0.0907	CGCCTCAGGCCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	4	20	-	3.96364	6.5e-05	0.0299	CTGGCCCCACCTCCCAG
SP4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	27	43	+	3.96364	6.5e-05	0.0299	CTCCCCCCGCCCTCCTC
SP4	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	45	61	+	3.96364	6.5e-05	0.0299	CAGGCCACCCGCCCACT
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	66	82	-	3.96364	6.5e-05	0.0299	GAGGCCACTCCCAGGGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	66	82	-	3.96364	6.5e-05	0.0299	GAGGCCACTCCCAGGGT
SP4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	72	88	-	3.96364	6.5e-05	0.0299	CTCCCCCCGCCCTCCTC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	89	98	+	12.3269	6.5e-05	0.404	GACACCTGTG
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	89	98	+	12.3269	6.5e-05	0.404	GACACCTGTG
Creb3l2	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	86	94	-	11.5506	6.5e-05	0.249	GAGACGTGT
Creb3l2	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	21	29	+	11.5506	6.5e-05	0.249	GAGACGTGT
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	85	93	+	11.5506	6.5e-05	0.249	GAGACGTGT
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	17	37	-	9.71429	6.5e-05	0.0195	GAGAGAAGGTATGGAGGGAGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	20	40	-	9.71429	6.5e-05	0.0195	GAGGGCGGGGGGAGGGAGCGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	33	53	-	9.71429	6.5e-05	0.0195	GAAGCCGGAAGTGTGGGTGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	33	53	-	9.71429	6.5e-05	0.0195	GAAGCCGGAAGTGTGGGTGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	73	93	-	9.71429	6.5e-05	0.0195	GATGGATGCGTTGGTGGGGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	32	52	+	9.71429	6.5e-05	0.0195	GGGGGCGGGACGCGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	32	52	+	9.71429	6.5e-05	0.0195	GGGGGCGGGACGCGGGGGCGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	32	52	+	9.71429	6.5e-05	0.0195	GGGGGCGGGACGCGGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	32	52	+	9.71429	6.5e-05	0.0195	GGGGGCGGGACGCGGGGGCGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	75	95	+	9.71429	6.5e-05	0.0195	GAGGGCGGGGGGAGGGAGCGC
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	78	98	+	9.71429	6.5e-05	0.0195	GAGAGAAGGTATGGAGGGAGG
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	57	77	+	9.06452	6.5e-05	0.187	TTTTCATTTCCTTTTTGTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	57	77	+	9.06452	6.5e-05	0.187	TTTTCATTTCCTTTTTGTTTT
Gmeb1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	84	100	+	10.7895	6.5e-05	0.668	CGGGTGACGTCAGGGGC
Gmeb1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	15	31	-	10.7895	6.5e-05	0.668	CGGGTGACGTCAGGGGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	19	29	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	37	47	+	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	37	47	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	37	47	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	39	49	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	39	49	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	39	49	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	56	66	+	10.5862	6.5e-05	0.0221	AAACCGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	53	63	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	59	69	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	59	69	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr6:72130481..72130595,-__756.1.0.0	69	79	-	10.5862	6.5e-05	0.0221	GCCCCGCGCCC
Nkx2-5(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	20	30	-	11.6182	6.5e-05	0.721	AGACTCTCAGG
Nkx2-5(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	85	95	+	11.6182	6.5e-05	0.721	AGACTCTCAGG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	16	26	+	10.7091	6.5e-05	0.211	TGGTGACTAAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	82	92	-	10.7091	6.5e-05	0.211	TGGTGACTAAT
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	7	22	+	-2.04082	6.5e-05	0.877	AGGGGTGAGAGGTCAG
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	7	22	+	-2.04082	6.5e-05	0.877	AGGGGTGAGAGGTCAG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	70	84	+	8.40984	6.5e-05	0.0674	AGCCCCACCCACTGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	70	84	+	8.40984	6.5e-05	0.0674	AGCCCCACCCACTGA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	70	84	+	8.40984	6.5e-05	0.0674	AGCCCCACCCACTGA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	70	84	+	8.40984	6.5e-05	0.0674	AGCCCCACCCACTGA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	35	47	-	10.8689	6.5e-05	0.359	TTGTCTGGCCCCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	35	47	-	10.8689	6.5e-05	0.359	TTGTCTGGCCCCA
RORA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	3	12	+	11.9326	6.5e-05	0.973	AATGAGGTCA
RORA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	3	12	+	11.9326	6.5e-05	0.973	AATGAGGTCA
RORA	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	35	44	-	11.9326	6.5e-05	0.973	AATGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	71	80	+	11.9326	6.5e-05	0.973	AATGAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	71	80	+	11.9326	6.5e-05	0.973	AATGAGGTCA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	44	58	-	10.3377	6.5e-05	1	CGTTACTTAATAACA
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	44	58	-	10.3377	6.5e-05	1	CGTTACTTAATAACA
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	44	58	-	10.3377	6.5e-05	1	CGTTACTTAATAACA
GSC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	5	14	-	11.2075	6.5e-05	1	GTTAATCCTT
GSC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	5	14	-	11.2075	6.5e-05	1	GTTAATCCTT
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	+	12.0328	6.5e-05	0.333	AACACGTGTG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	-	12.0328	6.5e-05	0.333	AACACGTGTG
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	-	12.0328	6.5e-05	0.333	AACACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	-	12.0328	6.5e-05	0.333	AACACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	-	12.0328	6.5e-05	0.333	AACACGTGTG
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	-	12.0328	6.5e-05	0.333	AACACGTGTG
FOXP1	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	97	111	+	11.1268	6.5e-05	0.341	GCAAAAAAAACAAGG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	62	76	-	11.1268	6.5e-05	0.341	GAGATGTAAACAGGA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	13	25	-	8.39655	6.5e-05	0.167	CTCCCGGAAGCTG
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	13	25	-	8.39655	6.5e-05	0.167	CTCCCGGAAGCTG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	50	62	-	8.39655	6.5e-05	0.167	AAGCAGGAAGAGG
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	50	62	-	8.39655	6.5e-05	0.167	AAGCAGGAAGAGG
ELF3	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	90	102	+	8.39655	6.5e-05	0.167	CTCCCGGAAGCTG
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	62	74	+	8.36364	6.5e-05	0.264	CGGTTAACCCCCC
TFEB	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	11.2885	6.5e-05	0.167	GTCACGTGGT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	11.2885	6.5e-05	0.167	GTCACGTGGT
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	9	20	-	10.6552	6.5e-05	0.365	GCACCCACCACA
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	9	20	-	10.6552	6.5e-05	0.365	GCACCCACCACA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	80	91	+	10.6552	6.5e-05	0.365	ACAACCACCAGC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	101	112	+	10.6552	6.5e-05	0.365	GCACCCACCACA
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	101	112	+	10.6552	6.5e-05	0.365	GCACCCACCACA
ETV5	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	56	65	+	11.3091	6.5e-05	0.114	AACGGATGTG
ETV5	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	59	-	11.3091	6.5e-05	0.114	AACGGATGTG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	31	+	11.898	6.5e-05	0.163	GGCAGCTGTGT
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	31	+	11.898	6.5e-05	0.163	GGCAGCTGTGT
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	31	+	11.898	6.5e-05	0.163	GGCAGCTGTGT
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	31	+	11.898	6.5e-05	0.163	GGCAGCTGTGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	90	108	+	10.6935	6.5e-05	0.674	TGGCCTGGGGAGAACCGCC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	90	108	+	10.6935	6.5e-05	0.674	TGGCCTGGGGAGAACCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	96	106	-	10.1636	6.5e-05	0.0206	ACGGCCGCGCG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	100	110	-	11.3182	6.5e-05	0.362	CGCCGCCATTC
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	100	110	-	11.3182	6.5e-05	0.362	CGCCGCCATTC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	20	30	-	10.9242	6.51e-05	0.0474	AGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	63	73	-	10.9242	6.51e-05	0.0474	AGCTCCGCCCA
NR3C2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	74	90	-	5.19149	6.51e-05	1	GGGGACAGAGTGGACCG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	18	35	-	-13.8816	6.51e-05	0.053	GAGGAGGAGGAGGGATGG
Creb5	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	75	86	+	8.89091	6.51e-05	0.228	AATGACGCCACA
Creb5	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	29	40	-	8.89091	6.51e-05	0.228	AATGACGCCACA
HOXC12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	20	30	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	20	30	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	20	30	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	66	76	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	66	76	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	66	76	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	66	76	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	66	76	+	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	39	49	-	10.9091	6.51e-05	1	AATCATAAAAC
HOXC12	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	85	95	-	10.9091	6.51e-05	1	AATCATAAAAC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	31	50	-	3.84404	6.51e-05	0.0637	ACTCCACCCAGCACCCCTGG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	31	50	-	3.84404	6.51e-05	0.0637	ACTCCACCCAGCACCCCTGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	64	83	-	3.84404	6.51e-05	0.0637	ACTCAACACACACTCACAGA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	84	103	-	3.84404	6.51e-05	0.0637	TAACCAGACACCACCACCGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	84	103	-	3.84404	6.51e-05	0.0637	TAACCAGACACCACCACCGC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	84	103	-	3.84404	6.51e-05	0.0637	TAACCAGACACCACCACCGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	84	103	-	3.84404	6.51e-05	0.0637	TAACCAGACACCACCACCGC
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	99	-	10.4878	6.51e-05	0.569	TGCAGCTGTT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	99	-	10.4878	6.51e-05	0.569	TGCAGCTGTT
Hoxd8	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	31	47	+	10.9524	6.51e-05	1	TTAATAATTAACTGTAG
IRF2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	48	65	+	5.25688	6.51e-05	0.626	GGAAAAAGAAGCCGATTC
IRF2	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	51	68	-	5.25688	6.51e-05	0.626	GGAAAAAGAAGCCGATTC
IRF2	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	63	80	-	5.25688	6.51e-05	0.626	TGAAAGAGAAAACAATCC
BATF3	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	38	51	+	1.07576	6.51e-05	0.215	AGGTGACGTCTGAA
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	81	98	+	10.9556	6.51e-05	0.965	TCAGAGTCAGCAGCTGGG
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	81	98	+	10.9556	6.51e-05	0.965	TCAGAGTCAGCAGCTGGG
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	14	26	-	10.7241	6.51e-05	1	CTCCTTTGCATAA
Hmx3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	46	62	-	10.8902	6.51e-05	1	CTCCGCACTTAAAACAT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	+	11.2115	6.51e-05	0.0758	ACCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	-	11.2115	6.51e-05	0.0758	ACCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	-	11.2115	6.51e-05	0.0758	ACCCTGGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	-	11.2115	6.51e-05	0.0758	TGCCTCCGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	-	11.2115	6.51e-05	0.0758	TGCCTCCGGCC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	20	28	+	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	31	39	+	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	34	42	+	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	91	99	+	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	26	34	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	37	45	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	37	45	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	73	81	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	75	83	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	104	112	-	11.1636	6.51e-05	0.348	ATGCCCAGG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	104	112	-	11.1636	6.51e-05	0.348	ATGCCCAGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	17	28	-	11.3273	6.51e-05	0.0577	CGCCCGGCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	17	28	-	11.3273	6.51e-05	0.0577	CGCCCGGCGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	17	28	-	11.3273	6.51e-05	0.0577	CGCCCGGCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	17	28	-	11.3273	6.51e-05	0.0577	CGCCCGGCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	94	105	-	11.3273	6.51e-05	0.0577	CACCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	94	105	-	11.3273	6.51e-05	0.0577	CACCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	94	105	-	11.3273	6.51e-05	0.0577	CACCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	94	105	-	11.3273	6.51e-05	0.0577	CACCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	94	105	-	11.3273	6.51e-05	0.0577	CACCTCCAGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	106	-	11.3273	6.51e-05	0.0577	CCCCCAAGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	106	-	11.3273	6.51e-05	0.0577	CCCCCAAGGGCG
Nr2e3	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	2	8	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	6	12	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	7	13	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	8	14	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	8	14	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	13	19	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	20	26	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	21	27	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	44	50	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	54	60	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	59	65	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	59	65	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	59	65	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	59	65	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	63	69	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	64	70	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	64	70	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	70	76	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	71	77	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	75	81	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	83	89	+	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	88	94	+	12.8571	6.51e-05	1	CAAGCTT
Sox2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	1	8	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	1	8	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	6	13	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	6	13	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	71	78	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	78	85	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	78	85	+	13.0984	6.51e-05	1	CCATTGTC
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	78	85	+	13.0984	6.51e-05	1	CCATTGTC
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	2	8	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	4	10	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	5	11	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	5	11	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	5	11	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	5	11	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	6	12	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	1	7	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	2	8	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	3	9	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	9	15	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	3	9	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	3	9	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	3	9	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	3	9	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	9	15	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	11	17	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	5	11	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	5	11	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	12	18	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	12	18	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	6	12	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	6	12	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	15	21	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	10	16	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	16	22	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	10	16	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	16	22	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	11	17	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	11	17	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	18	24	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	18	24	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	19	25	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	19	25	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	20	26	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	20	26	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	14	20	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	20	26	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	15	21	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	15	21	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	15	21	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	15	21	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	15	21	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	16	22	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	16	22	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	22	28	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	16	22	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	22	28	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	17	23	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	17	23	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	24	30	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	24	30	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	24	30	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	25	31	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	26	32	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	26	32	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	21	27	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	21	27	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	23	29	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	24	30	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	31	37	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	31	37	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	26	32	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	32	38	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	33	39	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	28	34	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	28	34	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	28	34	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	29	35	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	29	35	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	35	41	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	30	36	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	30	36	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	36	42	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	37	43	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	37	43	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	37	43	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	37	43	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	37	43	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	31	37	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	32	38	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	38	44	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	39	45	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	33	39	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	33	39	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	35	41	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	41	47	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	35	41	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	35	41	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	35	41	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	43	49	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	43	49	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	37	43	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	38	44	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	38	44	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	47	53	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	47	53	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	47	53	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	47	53	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	42	48	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	42	48	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	51	57	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	52	58	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	47	53	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	47	53	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	47	53	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	47	53	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	53	59	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	56	62	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	50	56	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	51	57	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	51	57	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	51	57	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	58	64	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	52	58	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	53	59	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	59	65	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	59	65	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	61	67	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	62	68	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	56	62	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	56	62	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	56	62	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	56	62	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	56	62	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	63	69	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	59	65	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	59	65	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	66	72	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	68	74	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	70	76	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	71	77	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	71	77	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	66	72	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	66	72	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	68	74	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	74	80	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	74	80	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	74	80	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	74	80	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	74	80	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	69	75	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	69	75	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	69	75	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	69	75	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	70	76	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	71	77	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	72	78	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	72	78	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	73	79	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	79	85	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	79	85	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	74	80	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	74	80	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	82	88	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	83	89	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	84	90	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	78	84	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	85	91	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	80	86	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	88	94	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	88	94	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	84	90	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	90	96	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	85	91	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	85	91	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	86	92	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	86	92	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	86	92	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	86	92	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	93	99	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	93	99	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	94	100	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	91	97	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	98	104	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	96	102	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	96	102	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	102	108	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	104	110	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	104	110	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	104	110	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	104	110	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	98	104	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	98	104	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	98	104	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	105	111	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	105	111	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	106	112	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	100	106	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	107	113	+	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	103	109	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	103	109	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	103	109	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	107	113	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	107	113	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	107	113	-	11.9703	6.51e-05	0.279	TGACTCA
FOS::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	108	114	-	11.9703	6.51e-05	0.279	TGACTCA
SPIB	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	2	8	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	4	10	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	8	14	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	8	14	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	8	14	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	8	14	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	8	14	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	9	15	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	9	15	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	5	11	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.0.0	7	13	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.1.0	7	13	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	7	13	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	7	13	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	8	14	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	14	20	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	8	14	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	8	14	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr8:58658608..58658722,+__861.1.0.0	14	20	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	14	20	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	9	15	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	10	16	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	10	16	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	11	17	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	12	18	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	12	18	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	14	20	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	15	21	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	15	21	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	22	28	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	22	28	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	22	28	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	24	30	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	25	31	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	26	32	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	26	32	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	26	32	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	26	32	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	26	32	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	23	29	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	23	29	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	23	29	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	24	30	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	30	36	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	24	30	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	30	36	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.0	30	36	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	24	30	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.0.0	30	36	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	32	38	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	33	39	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	27	33	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	27	33	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	33	39	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	35	41	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	35	41	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	35	41	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	36	42	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	33	39	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	33	39	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	40	46	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	40	46	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	35	41	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	35	41	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	35	41	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	41	47	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	35	41	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	41	47	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	36	42	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	42	48	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	37	43	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	37	43	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	37	43	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	37	43	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	46	52	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	46	52	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	46	52	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	42	48	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	48	54	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	48	54	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	42	48	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	42	48	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	43	49	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	50	56	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	50	56	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	44	50	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	45	51	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	45	51	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	45	51	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	45	51	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	45	51	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	51	57	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	52	58	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	52	58	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	52	58	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	52	58	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	53	59	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	53	59	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	53	59	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	53	59	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	48	54	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	54	60	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	54	60	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	54	60	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	54	60	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	49	55	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	55	61	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	55	61	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	55	61	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	50	56	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	56	62	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	56	62	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	52	58	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	59	65	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	53	59	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	54	60	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	54	60	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	61	67	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	56	62	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	57	63	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	58	64	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	59	65	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	59	65	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	59	65	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	66	72	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	66	72	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	67	73	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	67	73	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	61	67	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	67	73	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	67	73	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	68	74	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	63	69	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	63	69	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	70	76	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	71	77	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	71	77	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	71	77	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	73	79	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	73	79	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	68	74	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	68	74	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	69	75	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	69	75	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	76	82	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	77	83	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	71	77	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	72	78	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	72	78	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	72	78	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	79	85	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	81	87	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	76	82	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	76	82	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	77	83	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	77	83	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	77	83	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	77	83	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	85	91	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	85	91	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	80	86	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	80	86	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	84	90	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	84	90	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	84	90	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.1.0	84	90	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.0.0	84	90	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	87	93	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	94	100	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	95	101	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	97	103	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	97	103	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	91	97	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	99	105	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	100	106	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	95	101	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	101	107	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	101	107	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	102	108	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	96	102	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	96	102	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	103	109	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	103	109	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	104	110	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	104	110	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	105	111	+	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	103	109	-	11.2333	6.51e-05	0.297	AGAGGAA
SPIB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	103	109	-	11.2333	6.51e-05	0.297	AGAGGAA
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	4	11	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	4	11	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	4	11	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	4	11	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	5	12	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	5	12	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	5	12	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	5	12	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	25	32	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	33	40	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	56	63	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	57	64	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	57	64	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	82	89	+	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	93	100	+	12.3265	6.51e-05	0.775	GCATTCCT
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	1	7	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	1	7	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	5	11	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	12	18	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	13	19	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	13	19	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	24	30	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	28	34	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	32	38	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	56	62	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	58	64	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	58	64	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	78	84	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.0.0	100	106	-	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122238640..122238754,-__163.1.1.0	100	106	-	10.3111	6.51e-05	1	TTGACAG
Nr2e3	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	21	27	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	34	40	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	34	40	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	39	45	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	45	51	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	53	59	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	60	66	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	60	66	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	65	71	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	65	71	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	74	80	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	80	86	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	80	86	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	82	88	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	82	88	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	82	88	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	82	88	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	82	88	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	89	95	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	107	113	-	12.8571	6.51e-05	1	CAAGCTT
Nr2e3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	107	113	-	12.8571	6.51e-05	1	CAAGCTT
Sox2	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	37	44	-	13.0984	6.51e-05	1	CCATTGTC
Nkx3-1	WILDTYPE__mrna.noflip.NA__chr17:10452902..10453016,-__1036.1.0.0	65	73	-	11.8	6.51e-05	1	CCCACTTAC
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	9	16	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	9	16	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	9	16	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	15	22	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	15	22	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	30	37	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.1.0	36	43	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.0.0	36	43	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	52	59	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	75	82	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	77	84	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	78	85	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	78	85	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	78	85	-	12.3265	6.51e-05	0.775	GCATTCCT
TEAD3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	78	85	-	12.3265	6.51e-05	0.775	GCATTCCT
MEIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	7	13	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	7	13	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	31	37	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	52	58	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	52	58	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	63	69	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__mrna.noflip.NA__chr14:62203529..62203643,+__1020.1.0.0	71	77	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	75	81	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	83	89	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	83	89	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	84	90	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	84	90	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	92	98	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	96	102	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	96	102	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	96	102	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	96	102	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	97	103	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	101	107	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	102	108	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	102	108	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	106	112	+	10.3111	6.51e-05	1	TTGACAG
MEIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	106	112	+	10.3111	6.51e-05	1	TTGACAG
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	-	11.6061	6.51e-05	0.285	ATCACGTGGG
MLXIPL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	-	11.6061	6.51e-05	0.285	ATCACGTGGG
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	-	11.6061	6.51e-05	0.285	ATCACGTGGG
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	-	11.6061	6.51e-05	0.285	ATCACGTGGG
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	-	11.6061	6.51e-05	0.285	ATCACGTGGG
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	32	46	+	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	32	46	+	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
STAT1::STAT2	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	37	51	+	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	64	78	-	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	64	78	-	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
STAT1::STAT2	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	69	83	-	9.68182	6.51e-05	0.317	GAAGTTTCTCTACCC
TBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	67	77	-	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	67	77	-	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	67	77	-	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	67	77	-	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	50	60	+	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	50	60	+	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	50	60	+	11.2182	6.51e-05	1	TTGGTGTGAAT
TBX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	50	60	+	11.2182	6.51e-05	1	TTGGTGTGAAT
ETV6	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	61	70	-	11.4038	6.51e-05	0.109	AGGGGAAGTA
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.6731	6.51e-05	0.28	CACACGTGAT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	10	20	+	11	6.51e-05	0.0659	GAGGAAGCGGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	67	77	-	11	6.51e-05	0.0659	GAGGAAGCGGC
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	3	13	+	10.3818	6.51e-05	0.269	AGGCGGATGTA
SPDEF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	5	15	-	10.3818	6.51e-05	0.269	AGGCGGATGTA
SPDEF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	5	15	-	10.3818	6.51e-05	0.269	AGGCGGATGTA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	44	-	-4.03448	6.51e-05	1	TGAGAGGAAAAGGTCA
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	88	106	-	8.78689	6.51e-05	0.124	GAGTCTCCAGGAGGCAGGA
RELA	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	105	114	+	10.102	6.51e-05	0.233	CTGACTTTCC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	51	65	+	10.7021	6.51e-05	0.324	TGCAATGATGTCAAC
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	11	24	+	5.72449	6.51e-05	0.0723	GGGTGCACAGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	11	24	+	5.72449	6.51e-05	0.0723	GGGTGCACAGGGTG
E2F6	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	1	11	-	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	26	36	-	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	45	55	-	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	45	55	-	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	55	65	-	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	9	19	+	11.2759	6.51e-05	0.0691	GAGAGGGAGGT
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	10	20	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	10	20	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	50	60	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	50	60	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	50	60	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	50	60	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	62	72	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	79	89	+	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	89	99	+	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	89	99	+	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	89	99	+	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	89	99	+	11.2759	6.51e-05	0.0691	AAGAGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	104	114	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	104	114	+	11.2759	6.51e-05	0.0691	CGGCGGGAGCC
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	10	23	+	11.2885	6.51e-05	0.223	AGGAAATGACACAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	92	106	-	8.7541	6.51e-05	0.463	TTGACACAGCAGAGC
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	92	106	-	8.7541	6.51e-05	0.463	TTGACACAGCAGAGC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	92	106	-	8.7541	6.51e-05	0.463	TTGACACAGCAGAGC
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	92	106	-	8.7541	6.51e-05	0.463	TTGACACAGCAGAGC
MAF::NFE2	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	9	23	+	8.7541	6.51e-05	0.463	TTGACACAGCAGAGC
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	13	22	-	11.2424	6.51e-05	0.182	GGATGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	13	22	-	11.2424	6.51e-05	0.182	GGATGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	72	81	+	11.2424	6.51e-05	0.182	GGATGGGGGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	72	81	+	11.2424	6.51e-05	0.182	GGATGGGGGG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	11.1714	6.52e-05	0.111	GCCGGAAGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.1.0	17	31	+	6.5	6.52e-05	0.0412	CCCCGCCCCTGCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140027180..140027294,-__1638.1.0.0	17	31	+	6.5	6.52e-05	0.0412	CCCCGCCCCTGCCTC
Hoxd9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	27	36	+	10.9861	6.52e-05	1	ATAATAAAAA
Hoxd9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	27	36	+	10.9861	6.52e-05	1	ATAATAAAAA
ELF4	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	44	55	+	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	95	106	+	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	20	-	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	20	-	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	20	-	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	20	-	9.19672	6.52e-05	0.111	ATACAGGAAGTC
ELF4	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	71	-	9.19672	6.52e-05	0.111	ATACAGGAAGTC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	28	39	-	9.9898	6.52e-05	0.177	GGGATGGGGCCA
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	+	10.069	6.52e-05	0.249	CTCACGTGTT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	10.069	6.52e-05	0.249	CCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	10.069	6.52e-05	0.249	CCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	10.069	6.52e-05	0.249	CCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	10.069	6.52e-05	0.249	CCCACGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	10.069	6.52e-05	0.249	CCCACGTGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	-	10.069	6.52e-05	0.249	CTCACGTGTT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	-	10.069	6.52e-05	0.249	CTCACGTGTT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	-	10.069	6.52e-05	0.249	CTCACGTGTT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	-	10.069	6.52e-05	0.249	CTCACGTGTT
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	83	+	2.84483	6.52e-05	0.298	AGTCACGTGCCT
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	83	+	2.84483	6.52e-05	0.298	AGTCACGTGCCT
Spz1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	80	90	+	11.3545	6.52e-05	0.77	ACAGTAGCAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	80	90	+	11.3545	6.52e-05	0.77	ACAGTAGCAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	80	90	+	11.3545	6.52e-05	0.77	ACAGTAGCAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	80	90	+	11.3545	6.52e-05	0.77	ACAGTAGCAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	80	90	+	11.3545	6.52e-05	0.77	ACAGTAGCAGC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	57	66	+	10.8966	6.52e-05	0.136	CTCACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	57	66	+	10.8966	6.52e-05	0.136	CTCACCTGCG
NHLH1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	105	114	+	10.8966	6.52e-05	0.136	CTCACCTGCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	15	26	+	10.9714	6.52e-05	0.217	CAGGACCACCAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	60	69	+	10.4255	6.52e-05	0.094	ACCGGCAGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	60	69	+	10.4255	6.52e-05	0.094	ACCGGCAGTG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	+	11.3636	6.52e-05	0.0551	CCCCTGGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	+	11.3636	6.52e-05	0.0551	CCCCTGGGGCA
Tcf12	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	32	42	-	11.8776	6.52e-05	0.184	CACAGCTGTCG
Tcf12	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	35	45	-	11.8776	6.52e-05	0.184	CGCAGCTGCTT
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	53	63	-	11.8776	6.52e-05	0.184	CGCAGCTGCTT
Tcf12	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	63	73	-	11.8776	6.52e-05	0.184	CGCAGCTGCTT
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	83	+	11.8776	6.52e-05	0.184	CACAGCTGTCG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	83	+	11.8776	6.52e-05	0.184	CACAGCTGTCG
STAT1	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	16	26	-	10.6182	6.52e-05	0.372	TTTCTAGTAAT
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	60	70	-	10.6182	6.52e-05	0.372	CTTCCAGTAAG
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	60	70	-	10.6182	6.52e-05	0.372	CTTCCAGTAAG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	66	76	+	11.1636	6.52e-05	0.0702	AGCCCGAAGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	66	76	+	11.1636	6.52e-05	0.0702	AGCCCGAAGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	+	11.1636	6.52e-05	0.0702	ACCCTCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	24	34	-	11.1636	6.52e-05	0.0702	TCCCTCCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	24	34	-	11.1636	6.52e-05	0.0702	TCCCTCCGGCG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	10	22	-	2.30612	6.52e-05	0.253	CGGGGATGCCCTC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	10	22	-	2.30612	6.52e-05	0.253	CGGGGATGCCCTC
YY1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	95	106	-	10.6923	6.52e-05	0.295	TAAGATGGATGA
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	45	54	-	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	45	54	-	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	45	54	-	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	45	54	-	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	61	70	+	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	113	-	10.9828	6.52e-05	0.199	GCCACCTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	113	-	10.9828	6.52e-05	0.199	GCCACCTGCC
E2F1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	40	51	+	11.0656	6.52e-05	0.427	CTTGGCGCCCGG
E2F1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	64	75	-	11.0656	6.52e-05	0.427	CTTGGCGCCCGG
RARA::RXRA	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	15	31	+	9.86735	6.53e-05	0.368	AGTGGAGGGAGAGGGCG
RARA::RXRA	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	84	100	-	9.86735	6.53e-05	0.368	AGTGGAGGGAGAGGGCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	23	42	+	3.83486	6.53e-05	0.0637	CCACCGACCCCACCCCCTGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	23	42	+	3.83486	6.53e-05	0.0637	CCACCGACCCCACCCCCTGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	91	103	-	10.1311	6.53e-05	0.0644	TGCCTGGGGGGGC
EMX2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	11.3404	6.53e-05	1	AATAATTAGC
SP4	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	21	37	-	3.94545	6.53e-05	0.03	CCACACCCGCCCACATG
SP4	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	37	53	-	3.94545	6.53e-05	0.03	CCACACCCGCCCACATG
SP4	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	62	78	+	3.94545	6.53e-05	0.03	CCACACCCGCCCACATG
SP4	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	78	94	+	3.94545	6.53e-05	0.03	CCACACCCGCCCACATG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	30	44	+	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	30	44	+	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	34	48	+	9.45714	6.53e-05	0.122	ACGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	34	48	+	9.45714	6.53e-05	0.122	ACGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	31	45	-	9.45714	6.53e-05	0.122	ACGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	31	45	-	9.45714	6.53e-05	0.122	ACGGGGCGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	40	54	-	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	40	54	-	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
NR2C2	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	61	75	+	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
NR2C2	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	71	85	-	9.45714	6.53e-05	0.122	CGAGGGGGAGGGGGA
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	44	55	+	11.0449	6.53e-05	1	CATCCAGCTGGT
ZBTB7C	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	17	28	-	11.2258	6.53e-05	0.281	ACGACCCCTGAC
ZBTB7C	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	87	98	+	11.2258	6.53e-05	0.281	ACGACCCCTGAC
Rarg(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	38	54	+	-5.56364	6.53e-05	1	AACGTCATGAAGGTATA
Rarg(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	71	87	-	-5.56364	6.53e-05	1	AACGTCATGAAGGTATA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	71	87	-	-5.56364	6.53e-05	1	AACGTCATGAAGGTATA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	+	9.98276	6.53e-05	0.0554	GCCCTTCCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	-	9.98276	6.53e-05	0.0554	CGCCCACAAGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	-	9.98276	6.53e-05	0.0554	CGCCCACAAGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	+	9.98276	6.53e-05	0.0554	CGCCCCGTAGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	+	9.98276	6.53e-05	0.0554	CGCCCACAAGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	+	9.98276	6.53e-05	0.0554	CGCCCACAAGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	-	9.98276	6.53e-05	0.0554	TGCCTGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	-	9.98276	6.53e-05	0.0554	TGCCTGCGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	-	9.98276	6.53e-05	0.0554	TGCCTGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	-	9.98276	6.53e-05	0.0554	TGCCTGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	-	9.98276	6.53e-05	0.0554	TGCCTGCGCGGCG
ETV2	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	69	-	10.5574	6.53e-05	0.175	CAGCGGAAGCA
SP1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	32	42	+	11	6.53e-05	0.0168	TCTCCGCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	67	77	+	11	6.53e-05	0.0168	TCTCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	67	77	+	11	6.53e-05	0.0168	TCTCCGCCTTC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	36	45	+	11.2535	6.53e-05	0.155	ACTGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	36	45	+	11.2535	6.53e-05	0.155	ACTGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	99	108	-	11.2535	6.53e-05	0.155	ACTGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	99	108	-	11.2535	6.53e-05	0.155	ACTGGAAGTC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	69	83	+	10.7885	6.53e-05	0.45	AGGTCAGCACCACTC
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	89	103	-	10.7885	6.53e-05	0.45	ATGTCACAGAGTCAT
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	89	103	-	10.7885	6.53e-05	0.45	ATGTCACAGAGTCAT
KLF16	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	27	+	10.569	6.53e-05	0.0221	CGCCCGCCCAC
KLF16	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	21	31	-	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	34	44	-	10.569	6.53e-05	0.0221	CGCCCGCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	39	49	-	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	66	76	+	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	67	77	+	10.569	6.53e-05	0.0221	CGCCCGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	78	88	+	10.569	6.53e-05	0.0221	CGCCCGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	70	80	-	10.569	6.53e-05	0.0221	CGCCCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	71	81	-	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	71	81	-	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	84	94	+	10.569	6.53e-05	0.0221	ACCCCGCCCCG
KLF16	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	88	98	-	10.569	6.53e-05	0.0221	CGCCCGCCCAC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	68	81	-	5.71429	6.53e-05	0.0723	GGGGCGCTGGGGTT
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	68	81	-	5.71429	6.53e-05	0.0723	GGGGCGCTGGGGTT
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	67	78	+	11.2347	6.53e-05	0.0866	CGCCCCGAGCCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	67	78	+	11.2347	6.53e-05	0.0866	CGCCCCGAGCCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	+	11.2347	6.53e-05	0.0866	TGCCCGGAGCCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	47	58	-	11.2347	6.53e-05	0.0866	CGCCCCGAGCCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	47	58	-	11.2347	6.53e-05	0.0866	CGCCCCGAGCCG
JUND	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	+	10.6383	6.54e-05	0.226	ACTGAGTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	-	10.6383	6.54e-05	0.226	ACTGAGTCAGC
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	-	10.6383	6.54e-05	0.226	ACTGAGTCAGC
Rfx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	3	16	+	10.1897	6.54e-05	0.287	GTCCGCCTAGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	3	16	+	10.1897	6.54e-05	0.287	GTCCGCCTAGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	78	91	-	10.1897	6.54e-05	0.287	GTCCGCCTAGTAAC
Rfx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	78	91	-	10.1897	6.54e-05	0.287	GTCCGCCTAGTAAC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	53	68	-	10.3273	6.54e-05	0.0398	CCCCGCGCCCGCTCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	53	68	-	10.3273	6.54e-05	0.0398	CCCCGCGCCCGCTCTC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	97	112	-	10.3273	6.54e-05	0.0398	TCCCGCGCGCGCAAGC
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	16	25	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	16	25	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	16	25	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	32	41	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	32	41	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	32	41	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	32	41	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	70	79	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	104	113	-	11.2979	6.54e-05	0.898	AGGCGTGAAT
TBR1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	2	11	+	11.2979	6.54e-05	0.898	AGGCGTGAAT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	1	19	+	10.5968	6.54e-05	0.15	CTGCGCAGGCAGGTGGAGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	1	19	+	10.5968	6.54e-05	0.15	CTGCGCAGGCAGGTGGAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	17	30	-	10.3462	6.54e-05	0.0248	CTCTCTCCTCCGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	17	30	-	10.3462	6.54e-05	0.0248	CTCTCTCCTCCGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	17	30	-	10.3462	6.54e-05	0.0248	CTCTCTCCTCCGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	17	30	-	10.3462	6.54e-05	0.0248	CTCTCTCCTCCGCA
EGR1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	85	98	+	10.3462	6.54e-05	0.0248	CTCTCTCCTCCGCA
Klf12	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	14	28	-	8.39344	6.54e-05	0.0674	CGCCCCGCCCCTTGC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	50	64	+	8.39344	6.54e-05	0.0674	CGCCCCGCCCCTCGC
Klf12	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	51	65	-	8.39344	6.54e-05	0.0674	CGCCCCGCCCCTCGC
Klf12	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	87	101	+	8.39344	6.54e-05	0.0674	CGCCCCGCCCCTTGC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	16	28	+	10.3934	6.54e-05	0.0589	CGCCTGCCGGGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	56	68	-	10.3934	6.54e-05	0.0589	TGCCCTGCCGGGC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	87	99	-	10.3934	6.54e-05	0.0589	CGCCTGCCGGGCG
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	20	29	+	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	20	29	+	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	20	29	+	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	21	30	-	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	21	30	-	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	21	30	-	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	21	30	-	10.5854	6.54e-05	0.956	GTTTTCCGTT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	21	30	-	10.5854	6.54e-05	0.956	GTTTTCCGTT
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	83	-	10.551	6.54e-05	0.325	AGGCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	83	-	10.551	6.54e-05	0.325	AGGCACGTGAC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	16	27	+	6.91837	6.54e-05	0.203	ACTGATGTCACA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	5	16	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	5	16	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	5	16	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	5	16	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	15	26	-	10.8816	6.54e-05	0.0326	GCCACACCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	29	40	+	10.8816	6.54e-05	0.0326	CCCACCCCCAGA
SP8	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	31	42	+	10.8816	6.54e-05	0.0326	GCCACACCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	44	55	+	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	48	59	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	71	82	+	10.8816	6.54e-05	0.0326	CCCACCCCCAGA
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	60	71	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	68	79	-	10.8816	6.54e-05	0.0326	GCCCCTCCCGCC
SP8	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	73	84	-	10.8816	6.54e-05	0.0326	GCCACACCTCCA
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	17	30	-	3.90909	6.55e-05	0.379	GATCCCACGGGAAG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	50	63	-	3.90909	6.55e-05	0.379	GCCCCCCCGGCACG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	50	63	-	3.90909	6.55e-05	0.379	GCCCCCCCGGCACG
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	67	76	+	10.6212	6.55e-05	1	TACAACTGTT
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	67	76	+	10.6212	6.55e-05	1	TACAACTGTT
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	52	66	-	11.1127	6.55e-05	0.341	GAAATGAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	52	66	-	11.1127	6.55e-05	0.341	GAAATGAAAAAAAAA
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	25	+	6.44681	6.55e-05	0.0995	CACTTCCTGCTGGG
ZIC1	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	46	59	+	6.44681	6.55e-05	0.0995	CCAACCCTGCGGTG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	51	64	+	6.44681	6.55e-05	0.0995	ACCCGCCCACTGCG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	39	52	-	6.44681	6.55e-05	0.0995	GGCCAGCTGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	63	76	+	6.44681	6.55e-05	0.0995	GGCCAGCTGCTGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	63	76	+	6.44681	6.55e-05	0.0995	GGCCAGCTGCTGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	56	69	-	6.44681	6.55e-05	0.0995	CCAACCCTGCGGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	56	69	-	6.44681	6.55e-05	0.0995	CCAACCCTGCGGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	99	112	-	6.44681	6.55e-05	0.0995	CCAACCCTGCGGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	99	112	-	6.44681	6.55e-05	0.0995	CCAACCCTGCGGTG
SP2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	23	37	-	10.4828	6.55e-05	0.0147	GCTCCGCTCCCACCT
SP2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	41	55	+	10.4828	6.55e-05	0.0147	GCTCCGCTCCCACCT
SP2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	44	58	-	10.4828	6.55e-05	0.0147	ACCCTGCCCTTTCCC
SP2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	58	72	+	10.4828	6.55e-05	0.0147	ACCCTGCCCTTTCCC
SP2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	60	74	-	10.4828	6.55e-05	0.0147	GCTCCGCTCCCACCT
SP2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	78	92	+	10.4828	6.55e-05	0.0147	GCTCCGCTCCCACCT
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	72	88	+	11.2368	6.55e-05	1	AGGGCGCTGTTGATGGG
Rhox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	72	88	+	11.2368	6.55e-05	1	AGGGCGCTGTTGATGGG
TCF4	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	111	-	12.2653	6.55e-05	0.422	GGCACCTGTC
TCF4	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	4	13	+	12.2653	6.55e-05	0.422	GGCACCTGTC
Klf4	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	1	10	+	10.8163	6.55e-05	0.0234	AGGGCGTGAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	7	16	+	10.8163	6.55e-05	0.0234	AGGGCGTGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	12	21	+	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	37	-	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	37	46	+	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	37	46	+	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	52	-	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	52	-	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	50	59	-	10.8163	6.55e-05	0.0234	GGGGTGGGAC
Klf4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	78	-	10.8163	6.55e-05	0.0234	GGGGTGGGAC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	62	76	-	10.4182	6.55e-05	0.109	CCCCTCCCGCGGCTG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	62	76	-	10.4182	6.55e-05	0.109	CCCCTCCCGCGGCTG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	62	76	-	10.4182	6.55e-05	0.109	CCCCTCCCGCGGCTG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	62	76	-	10.4182	6.55e-05	0.109	CCCCTCCCGCGGCTG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	32	46	+	10.4182	6.55e-05	0.109	TCCGCCCCGCGGGTT
NRL	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	31	41	+	10.8462	6.55e-05	0.823	TCAGTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	64	74	-	10.8462	6.55e-05	0.823	TCAGTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	64	74	-	10.8462	6.55e-05	0.823	TCAGTGCTGAC
NRL	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	74	84	-	10.8462	6.55e-05	0.823	TCAGTGCTGAC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	+	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	+	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	-	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	-	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	+	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	+	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	+	10.6909	6.55e-05	0.225	GCTGACTCACT
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	+	10.6909	6.55e-05	0.225	GCTGACTCACT
HLF	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	16	+	11.6271	6.55e-05	1	AGTTACGCAATT
HLF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	10	21	-	11.6271	6.55e-05	1	AGTTACGCAATT
HLF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	10	21	-	11.6271	6.55e-05	1	AGTTACGCAATT
HLF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	10	21	-	11.6271	6.55e-05	1	AGTTACGCAATT
HLF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	10	21	-	11.6271	6.55e-05	1	AGTTACGCAATT
HLF	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	105	+	11.6271	6.55e-05	1	AGTTACGCAATT
Tcf7	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	15	26	+	9.32258	6.55e-05	1	AAAGAGCAGAGG
Tcf7	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	89	100	-	9.32258	6.55e-05	1	AAAGAGCAGAGG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	20	33	-	8.87931	6.55e-05	0.0352	CGCCCCACCCCTTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	20	33	-	8.87931	6.55e-05	0.0352	CGCCCCACCCCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	20	33	-	8.87931	6.55e-05	0.0352	CGCCCCACCCCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	20	33	-	8.87931	6.55e-05	0.0352	CGCCCCACCCCTTC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	95	108	-	8.87931	6.55e-05	0.0352	CCGCACGCCCACTG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	79	89	-	11.2586	6.55e-05	0.0692	AGGAGGGAGTG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	79	89	-	11.2586	6.55e-05	0.0692	AGGAGGGAGTG
E2F6	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	25	35	+	11.2586	6.55e-05	0.0692	AGGAGGGAGTG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	21	35	+	9.66667	6.55e-05	0.318	GAAGTTTTTTTTTTT
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	18	28	+	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	18	28	+	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	20	30	+	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	85	95	-	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	92	102	-	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	96	106	-	10.1455	6.55e-05	0.0206	CCGGCGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	103	113	-	10.1455	6.55e-05	0.0206	GCACATGCCCG
ESR1	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	10	26	+	-0.106061	6.55e-05	0.514	GGTGTCATGCTGACGTC
ESR1	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	36	52	-	-0.106061	6.55e-05	0.514	GGTGTCATGCTGACGTC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	75	88	+	6.40244	6.55e-05	0.5	TGCCCACACGCCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	75	88	+	6.40244	6.55e-05	0.5	TGCCCACACGCCCC
PAX1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	69	85	+	5.69091	6.55e-05	0.619	GGCCACGGAACGCTGCC
PAX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	80	96	+	5.69091	6.55e-05	0.619	AGTCACGCGAGGCTGGC
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	28	42	-	10.5081	6.55e-05	1	CTTTGTCATGGGGAA
Pou5f1::Sox2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	36	50	+	10.5081	6.55e-05	1	CTTTGTCATGGGGAA
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	36	50	+	10.5081	6.55e-05	1	CTTTGTCATGGGGAA
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	36	50	+	10.5081	6.55e-05	1	CTTTGTCATGGGGAA
Myc	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	42	51	+	11.9818	6.55e-05	0.443	ACACGTGGTG
Myc	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	64	73	-	11.9818	6.55e-05	0.443	ACACGTGGTG
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	28	38	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	28	38	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	32	42	+	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
SP3	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	42	52	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	56	+	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
SP3	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	60	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	55	65	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	55	65	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	101	111	+	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	102	112	+	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	3	13	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	4	14	-	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	34	44	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	34	44	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	50	60	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	50	60	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	55	65	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	69	79	-	11.0976	6.56e-05	0.0231	GACCCGCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	69	79	-	11.0976	6.56e-05	0.0231	GACCCGCCTCC
SP3	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	77	87	-	11.0976	6.56e-05	0.0231	GCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	104	114	-	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	104	114	-	11.0976	6.56e-05	0.0231	CCCCCTCCCCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	27	43	+	9.85714	6.56e-05	0.368	AGGTGAAGATCAGGGTA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	27	43	+	9.85714	6.56e-05	0.368	AGGTGAAGATCAGGGTA
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	13	27	+	7.42105	6.56e-05	0.253	CCCGTGACGAAGCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	79	93	+	7.42105	6.56e-05	0.253	TCTCAGAGTCAGCAG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	79	93	+	7.42105	6.56e-05	0.253	TCTCAGAGTCAGCAG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	12	29	-	-13.9737	6.56e-05	0.0532	GGGAGGGGGGGAGCTTAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	12	29	-	-13.9737	6.56e-05	0.0532	GGGAGGGGGGGAGCTTAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	12	29	-	-13.9737	6.56e-05	0.0532	GGGAGGGGGGGAGCTTAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	12	29	-	-13.9737	6.56e-05	0.0532	GGGAGGGGGGGAGCTTAA
Foxd3	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	60	71	-	11.3913	6.56e-05	1	TTATGTTAGTTT
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	24	42	+	8.77049	6.56e-05	0.124	CCACCACCAGGGGCTGGGT
HSF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	33	45	+	7.13115	6.56e-05	1	TTTGGGAATCTTC
HSF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	33	45	+	7.13115	6.56e-05	1	TTTGGGAATCTTC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr21:45132265..45132379,+__1795.1.0.0	62	74	-	2.28571	6.56e-05	0.253	GGGGGGTTAACCG
SRF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	46	61	+	5.27869	6.56e-05	1	CGTCCTTATATGTACT
SRF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	46	61	+	5.27869	6.56e-05	1	CGTCCTTATATGTACT
Hmx2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	46	62	-	10.8026	6.56e-05	1	CTCCGCACTTAAAACAT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	29	45	+	3.92727	6.56e-05	0.03	CCCCCCCCGCCCCCCGC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	29	45	+	3.92727	6.56e-05	0.03	CCCCCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	29	45	+	3.92727	6.56e-05	0.03	CCCCCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	29	45	+	3.92727	6.56e-05	0.03	CCCCCCCCGCCCCCCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	29	45	+	3.92727	6.56e-05	0.03	CCCCCCCCGCCCCCCGC
SP4	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	31	47	-	3.92727	6.56e-05	0.03	CTAGCTCCGCCTTTTTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	44	60	-	3.92727	6.56e-05	0.03	CCCTCCCCGCCCCTCTG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	44	60	-	3.92727	6.56e-05	0.03	CCCTCCCCGCCCCTCTG
SP4	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	68	84	+	3.92727	6.56e-05	0.03	CTAGCTCCGCCTTTTTG
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	97	108	-	10.6379	6.56e-05	0.365	CCGCCCACCGTT
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	97	108	-	10.6379	6.56e-05	0.365	CCGCCCACCGTT
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	97	108	-	10.6379	6.56e-05	0.365	CCGCCCACCGTT
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	14	28	+	8.2	6.56e-05	0.114	GCACACCCACTGAGA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	14	28	+	8.2	6.56e-05	0.114	GCACACCCACTGAGA
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	14	28	+	8.2	6.56e-05	0.114	GCACACCCACTGAGA
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	14	28	+	8.2	6.56e-05	0.114	GCACACCCACTGAGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	17	30	-	5.70408	6.56e-05	0.0723	AGGGGCGTCGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	17	30	-	5.70408	6.56e-05	0.0723	AGGGGCGTCGGGTG
RREB1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	5	24	-	3.81651	6.56e-05	0.0639	CCCACCATCCCCCACATCCC
RREB1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	91	110	+	3.81651	6.56e-05	0.0639	CCCACCATCCCCCACATCCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	1	21	-	9.69388	6.56e-05	0.0196	GGAGGGGAGTAGGAGGAGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	10	30	-	9.69388	6.56e-05	0.0196	GAAGGTGGGACGTTGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	19	39	-	9.69388	6.56e-05	0.0196	GAGGGAGACCCAGCCGGAGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	19	39	-	9.69388	6.56e-05	0.0196	GAGGGAGACCCAGCCGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	19	39	-	9.69388	6.56e-05	0.0196	GAGGGAGACCCAGCCGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	37	57	-	9.69388	6.56e-05	0.0196	AGGGGACCCAGAGCGGAGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	37	57	-	9.69388	6.56e-05	0.0196	AGGGGACCCAGAGCGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	55	75	-	9.69388	6.56e-05	0.0196	GAGGGGAGAGCAGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	55	75	-	9.69388	6.56e-05	0.0196	GAGGGGAGAGCAGGGAGGGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	57	77	-	9.69388	6.56e-05	0.0196	TGGTGAGAAGAGGAAGTGGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	66	86	-	9.69388	6.56e-05	0.0196	AGGGGCCCGGGAGAGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	66	86	-	9.69388	6.56e-05	0.0196	GGTGGGCGGAGGGAAGGGAAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	74	94	-	9.69388	6.56e-05	0.0196	GGAGCGTGGGGAGCCGGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	3	23	+	9.69388	6.56e-05	0.0196	GGAGGGGGCGGCGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	12	32	+	9.69388	6.56e-05	0.0196	GGTGGGCGGAGGGAAGGGAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	21	41	+	9.69388	6.56e-05	0.0196	GGAGCGTGGGGAGCCGGGGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	29	49	+	9.69388	6.56e-05	0.0196	GGTGGGCGGAGGGAAGGGAAG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	29	49	+	9.69388	6.56e-05	0.0196	AGGGGCCCGGGAGAGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	38	58	+	9.69388	6.56e-05	0.0196	TGGTGAGAAGAGGAAGTGGGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	38	58	+	9.69388	6.56e-05	0.0196	TGGTGAGAAGAGGAAGTGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	42	62	+	9.69388	6.56e-05	0.0196	CGGGGCTGAGGGGAGGGGTGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	79	99	+	9.69388	6.56e-05	0.0196	GGAGAAGCAGTGGGGAGGCGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	85	105	+	9.69388	6.56e-05	0.0196	GAAGGTGGGACGTTGGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	85	105	+	9.69388	6.56e-05	0.0196	GAAGGTGGGACGTTGGAGGGG
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	21	31	-	11.4	6.56e-05	0.141	AAGAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	30	40	-	11.4	6.56e-05	0.141	AAGAGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	30	40	-	11.4	6.56e-05	0.141	AAGAGGAAGTC
ELF5	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	66	-	11.4	6.56e-05	0.141	AAGAGGAAGTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	43	56	-	10.8636	6.56e-05	0.061	TAAAGCCAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	43	56	-	10.8636	6.56e-05	0.061	TAAAGCCAGGCCTG
MEF2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	13	27	-	10.9831	6.57e-05	1	AAGTTAAATATAGAT
MEF2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	13	27	-	10.9831	6.57e-05	1	AAGTTAAATATAGAT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	-	11.3091	6.57e-05	0.0577	GCCCCTAGGGCG
ETS1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	62	71	+	11.3966	6.57e-05	0.109	AACGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	82	-	11.3966	6.57e-05	0.109	AACGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	82	-	11.3966	6.57e-05	0.109	AACGGAAGTA
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	67	80	+	8.77273	6.57e-05	0.391	GATGTTAAAAGTCA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	21	35	-	10.6809	6.57e-05	0.324	AAGGGTGAGGCCAGG
JUND(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	21	35	-	10.6809	6.57e-05	0.324	AAGGGTGAGGCCAGG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	1	10	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	1	10	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	1	10	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	5	14	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	11	20	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	2	11	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	13	22	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	8	17	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	13	22	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	17	26	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	17	26	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	19	28	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	29	38	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	22	31	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	31	40	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	31	40	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	31	40	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	31	40	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	31	40	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	23	32	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	33	42	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	33	42	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	28	37	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	37	46	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	37	46	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	47	56	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	49	58	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	51	60	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	55	64	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	65	74	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	57	66	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	63	72	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	63	72	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	66	75	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	66	75	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	77	86	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	68	77	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	68	77	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	78	87	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	83	92	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	77	86	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	98	107	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	98	107	+	10.7339	6.57e-05	0.0553	CCCCCCGCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	102	111	-	10.7339	6.57e-05	0.0553	CCCCCCGCCC
RXRB	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	9	22	-	0.818182	6.57e-05	0.536	AGGGGCAGGGGTGA
RXRB	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	42	55	+	0.818182	6.57e-05	0.536	AGGGGCAGGGGTGA
RXRB	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	60	73	-	0.818182	6.57e-05	0.536	AGGGGCAGGGGTGA
RXRB	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	93	106	+	0.818182	6.57e-05	0.536	AGGGGCAGGGGTGA
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	100	111	-	11.3146	6.57e-05	0.865	ATTTTGCTGATT
Mafb	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	4	15	+	11.3146	6.57e-05	0.865	ATTTTGCTGATT
NR2C2	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	1	15	+	9.44286	6.57e-05	0.122	AGGGAGCAAAGTCCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	22	36	+	9.44286	6.57e-05	0.122	GCAGTTCGGGGGCCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	11	25	-	9.44286	6.57e-05	0.122	CCGGGGAAGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	90	104	+	9.44286	6.57e-05	0.122	CCGGGGAAGGGGGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	79	93	-	9.44286	6.57e-05	0.122	GCAGTTCGGGGGCCA
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	5	14	-	11.0484	6.57e-05	1	CTTTTCCAAT
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	5	14	-	11.0484	6.57e-05	1	CTTTTCCAAT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	12	29	+	-14	6.57e-05	0.0532	GGAGGGAGGCGAGGCGCA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	86	103	-	-14	6.57e-05	0.0532	GGAGGGAGGCGAGGCGCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	86	103	-	-14	6.57e-05	0.0532	GGAGGGAGGCGAGGCGCA
CUX1	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	44	53	+	11.7347	6.57e-05	1	TAATCAATGA
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	8.23077	6.57e-05	0.196	GCCACGTGCC
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	8.23077	6.57e-05	0.196	GCCACGTGCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	6	20	-	8.37705	6.57e-05	0.0674	CGCCCCGCCCAAGCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	6	20	-	8.37705	6.57e-05	0.0674	CGCCCCGCCCAAGCA
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	6	20	-	8.37705	6.57e-05	0.0674	CGCCCCGCCCAAGCA
Klf12	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	33	47	+	8.37705	6.57e-05	0.0674	AACCACGTCCTCAGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	68	82	-	8.37705	6.57e-05	0.0674	AACCACGTCCTCAGC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	68	82	-	8.37705	6.57e-05	0.0674	AACCACGTCCTCAGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	68	82	-	8.37705	6.57e-05	0.0674	AACCACGTCCTCAGC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	68	82	-	8.37705	6.57e-05	0.0674	AACCACGTCCTCAGC
Klf12	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	95	109	+	8.37705	6.57e-05	0.0674	CGCCCCGCCCAAGCA
RXRG	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	85	98	+	1.87234	6.58e-05	0.48	GAGGTCAGAGCTCG
RXRG	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	17	30	-	1.87234	6.58e-05	0.48	GAGGTCAGAGCTCG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	24	33	+	11.2121	6.58e-05	0.182	CGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	24	33	+	11.2121	6.58e-05	0.182	CGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	45	54	-	11.2121	6.58e-05	0.182	CGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	45	54	-	11.2121	6.58e-05	0.182	CGAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	89	98	-	11.2121	6.58e-05	0.182	CGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	89	98	-	11.2121	6.58e-05	0.182	CGAGGGGAAG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	8	22	+	10.4364	6.58e-05	0.32	ATAAAGAGAAGGTGA
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	8	22	+	10.4364	6.58e-05	0.32	ATAAAGAGAAGGTGA
MAX::MYC	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	11	21	+	10.5408	6.58e-05	0.325	AGCCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	61	71	+	10.5408	6.58e-05	0.325	AGCCACGTGAC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	4	14	+	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	4	14	+	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	6	16	-	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	6	16	-	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	39	49	+	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	56	66	+	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	49	59	-	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	49	59	-	10.9091	6.58e-05	0.0475	GCCCACGCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	55	65	-	10.9091	6.58e-05	0.0475	AAGCCCACCCT
Klf1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	101	111	-	10.9091	6.58e-05	0.0475	GCCCACGCCCC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	+	11.2245	6.58e-05	0.0866	CGCCCGGAGGGG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	25	36	-	11.2245	6.58e-05	0.0866	TGCCCTCAGCCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	51	-	9.96552	6.58e-05	0.0554	ACCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	51	-	9.96552	6.58e-05	0.0554	ACCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	51	-	9.96552	6.58e-05	0.0554	ACCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	51	-	9.96552	6.58e-05	0.0554	ACCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	101	113	+	9.96552	6.58e-05	0.0554	GCCCCCGGCGGCT
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	37	53	+	6.72414	6.58e-05	0.882	CGGAACGTTTCGTCCTC
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	74	88	+	9.83333	6.58e-05	0.321	CGGAGTGACAAAGCC
Hes2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	26	38	-	10.7619	6.58e-05	0.547	CCTTCACACGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	77	89	+	10.7619	6.58e-05	0.547	CCTTCACACGTGC
Hes2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	77	89	+	10.7619	6.58e-05	0.547	CCTTCACACGTGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	101	113	+	10.7619	6.58e-05	0.547	GAAGCACACGTGT
CEBPE	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	40	49	+	11.6545	6.58e-05	0.729	CTTGTGCAAC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	38	55	+	-14.0132	6.58e-05	0.0532	GGCGGGCGGGCAGGAGGC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	83	96	-	11.2692	6.58e-05	0.223	CACTTATGAGTCAT
NFYB	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	41	55	+	10.6923	6.58e-05	0.18	CACTCCTCCAATGGG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	37	51	-	10.6923	6.58e-05	0.18	CCGAAGGCCAATCAC
REL	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	63	72	+	11.2222	6.58e-05	0.33	GGGGGTTTTC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	97	106	-	11.2222	6.58e-05	0.33	GGGGGTTTTC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	40	60	+	9.03226	6.58e-05	0.187	TGCTAATTCCAGTTTCCTCTG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	40	60	+	9.03226	6.58e-05	0.187	TGCTAATTCCAGTTTCCTCTG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	34	54	-	9.03226	6.58e-05	0.187	TGCTAATTCCAGTTTCCTCTG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	34	54	-	9.03226	6.58e-05	0.187	TGCTAATTCCAGTTTCCTCTG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	42	62	-	9.03226	6.58e-05	0.187	CTCCTCTTTCAATTTCTAAAG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	76	96	-	9.03226	6.58e-05	0.187	CTCCTCTTTCAATTTCTAAAG
Myb	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	11	20	+	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	23	32	+	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	30	-	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	44	-	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	66	75	-	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	66	75	-	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	95	104	-	11.541	6.58e-05	0.905	GCAGCTGCCA
Myb	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	104	113	-	11.541	6.58e-05	0.905	GCAGCTGCCA
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	23	36	-	7.58571	6.58e-05	0.2	TGATGACGTAAAGG
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	23	36	-	7.58571	6.58e-05	0.2	TGATGACGTAAAGG
ATF7	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	79	92	+	7.58571	6.58e-05	0.2	TGATGACGTAAAGG
PITX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	70	78	-	11.1923	6.58e-05	1	AATAATCCC
PITX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	70	78	-	11.1923	6.58e-05	1	AATAATCCC
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	69	-	9.16393	6.58e-05	0.111	CGCCCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	69	-	9.16393	6.58e-05	0.111	CGCCCGGAAGCA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	69	-	9.16393	6.58e-05	0.111	CGCCCGGAAGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	10	20	+	9.56897	6.58e-05	0.0832	ACACGCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	10	20	+	9.56897	6.58e-05	0.0832	ACACGCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	10	20	+	9.56897	6.58e-05	0.0832	ACACGCACGCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	10	20	+	9.56897	6.58e-05	0.0832	ACACGCACGCA
EGR2	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	82	92	+	9.56897	6.58e-05	0.0832	ACACGCACGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	104	114	-	9.56897	6.58e-05	0.0832	ACACCTCCGCA
MLX	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	+	10.2143	6.58e-05	0.292	ACCACGTGAA
PLAG1	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	29	42	-	5.69388	6.58e-05	0.0723	GGGAGCCAGTGGGA
PLAG1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	83	96	-	5.69388	6.58e-05	0.0723	GCGGGCGAGGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	19	32	+	5.69388	6.58e-05	0.0723	GCGGGCGAGGGGGA
PLAG1	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	73	86	+	5.69388	6.58e-05	0.0723	GGGAGCCAGTGGGA
IRF7	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	15	28	-	8.74194	6.58e-05	0.731	CAGAAAAAGAAAGC
IRF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	67	80	-	8.74194	6.58e-05	0.731	CAGAAAAAGAAAGC
IRF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	67	80	-	8.74194	6.58e-05	0.731	CAGAAAAAGAAAGC
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	12	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	12	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	14	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	2	9	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	42	49	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	42	49	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	56	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	58	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	58	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	61	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	61	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	61	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	61	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	68	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	68	+	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	57	64	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	59	66	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	66	73	-	12.3607	6.59e-05	0.25	AGCACGTG
Mycn	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	106	113	+	12.3607	6.59e-05	0.25	AGCACGTG
Bach1::Mafk	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	14	28	-	7.40789	6.59e-05	0.253	GGCCTGAGTCACCGT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	31	45	+	7.40789	6.59e-05	0.253	GGCCTGAGTCACCGT
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	31	45	+	7.40789	6.59e-05	0.253	GGCCTGAGTCACCGT
Bach1::Mafk	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	70	84	-	7.40789	6.59e-05	0.253	GGCCTGAGTCACCGT
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	87	101	+	7.40789	6.59e-05	0.253	GGCCTGAGTCACCGT
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	12.0385	6.59e-05	0.298	CACACGTGAT
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	57	67	-	11.8776	6.59e-05	0.164	CGCAGCTGACG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	57	67	-	11.8776	6.59e-05	0.164	CGCAGCTGACG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	3	15	+	10.377	6.59e-05	0.0589	CGCCACGCGGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	+	10.377	6.59e-05	0.0589	ACCCCACGGGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	22	-	10.377	6.59e-05	0.0589	GCCCCCCCGGGGC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	100	112	-	10.377	6.59e-05	0.0589	CGCCACGCGGGCG
SOX4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	87	102	-	-12.4242	6.59e-05	1	TAGCGACTTCAGTGTG
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	20	36	-	9.84694	6.59e-05	0.368	GGGTGGGCGGGACGGCA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	47	63	-	9.84694	6.59e-05	0.368	GGGTGGGCGGGACGGCA
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	45	57	+	10.1364	6.59e-05	1	GTTATTAAGTAAC
HNF1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	45	57	+	10.1364	6.59e-05	1	GTTATTAAGTAAC
HNF1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	45	57	+	10.1364	6.59e-05	1	GTTATTAAGTAAC
IRF8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	76	89	-	-2.34545	6.59e-05	0.752	ATAATACTGAAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	76	89	-	-2.34545	6.59e-05	0.752	ATAATACTGAAAGT
EGR3	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	13	27	+	6.46552	6.59e-05	0.0412	CCCCGCCCCCGGTCC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	27	41	+	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	27	41	+	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	34	48	-	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	53	67	+	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	53	67	+	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	67	81	+	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	59	73	-	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	59	73	-	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	74	88	-	6.46552	6.59e-05	0.0412	TCCCGGCCCCGCCCC
MAFF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	9	26	+	10.9333	6.59e-05	0.965	GCATGCTCAGCACCTACC
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	9	26	+	10.9333	6.59e-05	0.965	GCATGCTCAGCACCTACC
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	9	26	+	10.9333	6.59e-05	0.965	GCATGCTCAGCACCTACC
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	9	26	+	10.9333	6.59e-05	0.965	GCATGCTCAGCACCTACC
POU4F2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	43	58	+	7.25455	6.59e-05	1	CGTCATAATTAATTGC
POU4F2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	43	58	+	7.25455	6.59e-05	1	CGTCATAATTAATTGC
POU4F2	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	72	-	7.25455	6.59e-05	1	CGTCATAATTAATTGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	20	29	+	9.94355	6.59e-05	0.0499	GTCACGCGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	20	29	-	9.94355	6.59e-05	0.0499	GCCGCGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	48	57	+	9.94355	6.59e-05	0.0499	GCCGCGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	48	57	+	9.94355	6.59e-05	0.0499	GCCGCGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	48	57	-	9.94355	6.59e-05	0.0499	GTCACGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	48	57	-	9.94355	6.59e-05	0.0499	GTCACGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	58	67	+	9.94355	6.59e-05	0.0499	GTCACGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	58	67	-	9.94355	6.59e-05	0.0499	GCCGCGTGAC
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	22	35	+	10.1724	6.59e-05	0.288	GTCTGCCTAGTAAC
Vdr	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	61	76	-	4.13115	6.59e-05	0.833	AGGCTTATCAGGTTCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	19	29	+	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	17	27	-	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	37	47	+	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	37	47	+	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	88	98	+	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
NRF1	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	86	96	-	10.1273	6.59e-05	0.0207	CAGCCCGCGCA
ZBTB33	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	21	35	-	10.3485	6.59e-05	0.112	TCCCCGCGCGCCCCC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	1	15	+	10.3485	6.59e-05	0.112	CTCCCGCGCCCCCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	65	79	+	10.3485	6.59e-05	0.112	GTCCCGCGGCGCTGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	65	79	+	10.3485	6.59e-05	0.112	GTCCCGCGGCGCTGC
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	66	80	+	10.3485	6.59e-05	0.112	CGCTCGCGCCCCCTC
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	21	37	-	3.29508	6.59e-05	0.563	GGGTCAGGGTGGGGCCT
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	21	37	-	3.29508	6.59e-05	0.563	GGGTCAGGGTGGGGCCT
STAT3	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	3	13	-	11.102	6.59e-05	0.306	TTTCTTAGAAA
STAT3	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	31	41	+	11.102	6.59e-05	0.306	TTTCTTAGAAA
STAT3	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	74	84	-	11.102	6.59e-05	0.306	TTTCTTAGAAA
STAT3	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	102	112	+	11.102	6.59e-05	0.306	TTTCTTAGAAA
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.2692	6.59e-05	0.167	CACACGTGAT
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	19	33	+	10.8829	6.59e-05	0.188	CGGGGTCATAGTTCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	81	97	-	3.90909	6.59e-05	0.0301	CTTAACCCGCCCAGCTT
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	81	97	-	3.90909	6.59e-05	0.0301	CTTAACCCGCCCAGCTT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	+	11.1273	6.59e-05	0.0702	TGCCCCAGGGT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	+	11.1273	6.59e-05	0.0702	TGCCCCAGGGT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	-	11.1273	6.59e-05	0.0702	TGCCCCAGGGT
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	1	10	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	1	10	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	11	20	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	11	20	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	13	22	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	13	22	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	26	35	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	26	35	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	21	30	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	29	38	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	29	38	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	29	38	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	30	39	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	30	39	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	35	44	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	47	56	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	42	51	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	43	52	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	47	56	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	59	68	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	59	68	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	64	73	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	68	77	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	68	77	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	70	79	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	62	71	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	62	71	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	62	71	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	62	71	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	83	92	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	83	92	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	83	92	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	83	92	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	83	92	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	80	89	-	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	94	103	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	94	103	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	95	104	-	11.2041	6.59e-05	0.0237	GCCCCGCCTT
KLF5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	105	114	+	11.2041	6.59e-05	0.0237	CCTCCGCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	105	114	+	11.2041	6.59e-05	0.0237	GCCCCGCCTT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	53	70	-	-14.0395	6.59e-05	0.0532	GGCAGGGGGCGGGGCAGG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	12	25	+	8.86207	6.59e-05	0.0352	AGGCACACCCACTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	12	25	+	8.86207	6.59e-05	0.0352	AGGCACACCCACTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	12	25	+	8.86207	6.59e-05	0.0352	AGGCACACCCACTG
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	12	25	+	8.86207	6.59e-05	0.0352	AGGCACACCCACTG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	15	28	+	8.86207	6.59e-05	0.0352	TGACGCGCCTCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	15	28	+	8.86207	6.59e-05	0.0352	TGACGCGCCTCCCA
KLF14	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	42	55	+	8.86207	6.59e-05	0.0352	GGGCCCGCCCTCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	97	110	-	8.86207	6.59e-05	0.0352	TGACGCGCCTCCCA
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	97	110	-	8.86207	6.59e-05	0.0352	TGACGCGCCTCCCA
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	58	75	-	10.8727	6.59e-05	1	CTTATCTCCTCACAACTC
GATA1::TAL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	58	75	-	10.8727	6.59e-05	1	CTTATCTCCTCACAACTC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	29	40	+	2.77586	6.59e-05	0.298	GGGCACGCGGCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	25	36	-	2.77586	6.59e-05	0.298	GGGCACGCGGCA
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	30	48	+	10.5806	6.59e-05	0.15	TGAGGTGGCGGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	30	48	-	10.5806	6.59e-05	0.15	TGAGGTGGCGGGGCGGGGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	95	113	-	10.5806	6.59e-05	0.15	TTGGTCAATCAGGCATAGA
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	32	48	+	0.6	6.6e-05	0.501	ATTCACGCCTGGGCGGG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	32	48	+	0.6	6.6e-05	0.501	ATTCACGCCTGGGCGGG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	32	48	+	0.6	6.6e-05	0.501	ATTCACGCCTGGGCGGG
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	32	48	+	0.6	6.6e-05	0.501	ATTCACGCCTGGGCGGG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	24	40	-	0.6	6.6e-05	0.501	AGCCCCGCCTCGCTGAG
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	24	40	-	0.6	6.6e-05	0.501	AGCCCCGCCTCGCTGAG
PAX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	66	82	-	0.6	6.6e-05	0.501	AGCCCCGCCTCGCTGAG
PAX9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	66	82	-	0.6	6.6e-05	0.501	AGCCCCGCCTCGCTGAG
EGR1	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	16	29	+	10.3269	6.6e-05	0.0249	CACCCACTCCCTCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	19	32	+	10.3269	6.6e-05	0.0249	CACCCTCTTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	19	32	+	10.3269	6.6e-05	0.0249	CACCCTCTTCCGCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	25	38	+	10.3269	6.6e-05	0.0249	GTTCCACCCCTTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	16	29	-	10.3269	6.6e-05	0.0249	CTACTGCCTCCGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	30	43	+	10.3269	6.6e-05	0.0249	GTTCCACCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	59	72	-	10.3269	6.6e-05	0.0249	CACCCACTCCCTCT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	59	72	-	10.3269	6.6e-05	0.0249	CACCCACTCCCTCT
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	72	85	-	10.3269	6.6e-05	0.0249	GTTCCACCCCTTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	86	99	+	10.3269	6.6e-05	0.0249	CTACTGCCTCCGCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	77	90	-	10.3269	6.6e-05	0.0249	GTTCCACCCCTTCC
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	37	51	-	11.0986	6.6e-05	0.341	CAGCGGAAAACAATG
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	76	90	-	11.0986	6.6e-05	0.341	CAGCGGAAAACAATG
MAF::NFE2	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	44	58	-	8.72131	6.6e-05	0.463	GTGACACGGCTACTC
MAF::NFE2	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	57	71	+	8.72131	6.6e-05	0.463	GTGACACGGCTACTC
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	4	17	+	6.42553	6.6e-05	0.0995	CGCTTCCCGCGGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	33	46	-	6.42553	6.6e-05	0.0995	GGCCGCACGCCGTG
ZIC1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	69	82	+	6.42553	6.6e-05	0.0995	GGCCGCACGCCGTG
E2F1	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	3	14	+	11.0492	6.6e-05	0.427	TTTCGCGCCGAA
E2F1	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	101	112	-	11.0492	6.6e-05	0.427	TTTCGCGCCGAA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	32	42	-	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	32	42	-	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	59	69	+	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	59	69	+	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	61	71	+	11.3455	6.6e-05	0.0551	CGCCTAAAGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	61	71	+	11.3455	6.6e-05	0.0551	CGCCTAAAGCA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	62	72	-	11.3455	6.6e-05	0.0551	CGCCCCCGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	62	72	-	11.3455	6.6e-05	0.0551	CGCCCCCGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	64	74	-	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	64	74	-	11.3455	6.6e-05	0.0551	TCCCCGAGGCC
DMRT3	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	102	112	+	11.541	6.6e-05	1	AATGTAACCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	30	44	-	10.4655	6.6e-05	0.0148	TCCGCGCCTCCGCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	30	44	-	10.4655	6.6e-05	0.0148	TCCGCGCCTCCGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	88	102	+	10.4655	6.6e-05	0.0148	GCACCGCCCAGTCGC
Sox17	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	46	54	+	11.5955	6.6e-05	1	CGCATTGTC
Sox17	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	90	98	+	11.5955	6.6e-05	1	CGCATTGTC
Sox17	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	105	113	-	11.5955	6.6e-05	1	CGCATTGTC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	4	19	+	10.3091	6.6e-05	0.0398	CCGCGCCCCCGCTCCG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	6	21	-	10.3091	6.6e-05	0.0398	CCCGCCCCACGCACCA
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	6	21	-	10.3091	6.6e-05	0.0398	CCCGCCCCACGCACCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	31	46	+	10.3091	6.6e-05	0.0398	CCCCGCCCGCTCAGTG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	31	46	+	10.3091	6.6e-05	0.0398	CCCCGCCCGCTCAGTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	25	40	-	10.3091	6.6e-05	0.0398	GGCCGCCCGCCCAGAG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	25	40	-	10.3091	6.6e-05	0.0398	GGCCGCCCGCCCAGAG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	25	40	-	10.3091	6.6e-05	0.0398	GGCCGCCCGCCCAGAG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	25	40	-	10.3091	6.6e-05	0.0398	GGCCGCCCGCCCAGAG
EGR4	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	94	109	+	10.3091	6.6e-05	0.0398	CCCGCCCCACGCACCA
Mitf	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	8	17	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	8	17	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	22	31	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	22	31	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	22	31	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	22	31	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	28	37	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	30	39	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	30	39	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	30	39	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	30	39	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	30	39	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	33	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	33	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	33	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	33	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	39	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	63	72	-	10.8878	6.6e-05	0.243	AGTCATGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	63	72	-	10.8878	6.6e-05	0.243	AGTCATGTGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	76	85	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	82	91	+	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	87	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	93	-	10.8878	6.6e-05	0.243	GGCCACGTGG
Mitf	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	107	-	10.8878	6.6e-05	0.243	GGCCACGTGG
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	5	14	+	9.43636	6.6e-05	1	TAATGAATTA
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	5	14	+	9.43636	6.6e-05	1	TAATGAATTA
PAX7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	5	14	+	9.43636	6.6e-05	1	TAATGAATTA
PAX7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	5	14	+	9.43636	6.6e-05	1	TAATGAATTA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	34	44	-	11.5714	6.6e-05	0.79	ATTTCAAAACT
EGR2	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	47	57	-	9.55172	6.6e-05	0.0832	ACGCCGCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	58	68	+	9.55172	6.6e-05	0.0832	ACGCCGCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	58	68	+	9.55172	6.6e-05	0.0832	ACGCCGCCGCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	84	94	-	9.55172	6.6e-05	0.0832	CCGCCTGCGCG
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	97	112	-	9.9697	6.6e-05	0.322	CGTCGCTATCACTACG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	97	112	-	9.9697	6.6e-05	0.322	CGTCGCTATCACTACG
ELF3	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	41	53	+	8.34483	6.6e-05	0.167	GTCCAGGAAGTTC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	60	72	+	8.34483	6.6e-05	0.167	AACCCGGAAACCG
ELF3	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	62	74	-	8.34483	6.6e-05	0.167	GTCCAGGAAGTTC
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	93	105	-	8.34483	6.6e-05	0.167	GTCCAGGAAGTTC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	93	105	-	8.34483	6.6e-05	0.167	GTCCAGGAAGTTC
GLIS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	85	100	-	-9.23077	6.6e-05	0.329	ATGCTCCCCACGTTCT
GLIS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	85	100	-	-9.23077	6.6e-05	0.329	ATGCTCCCCACGTTCT
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	85	100	-	-9.23077	6.6e-05	0.329	ATGCTCCCCACGTTCT
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	85	100	-	-9.23077	6.6e-05	0.329	ATGCTCCCCACGTTCT
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	1	19	+	8.7541	6.6e-05	0.124	GAGGCCCGAGGGGGCGCCC
CTCF	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	9	27	+	8.7541	6.6e-05	0.124	GGTCCTCCTGGGGGAGGAG
CTCF	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	13	31	+	8.7541	6.6e-05	0.124	GGGGCGGGAGGGGGAACTG
CTCF	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	17	35	+	8.7541	6.6e-05	0.124	GGTCCTCCTGGGGGAGGAG
CTCF	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	80	98	-	8.7541	6.6e-05	0.124	GGTCCTCCTGGGGGAGGAG
CTCF	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	84	102	-	8.7541	6.6e-05	0.124	GGGGCGGGAGGGGGAACTG
CTCF	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	88	106	-	8.7541	6.6e-05	0.124	GGTCCTCCTGGGGGAGGAG
ELF1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	24	35	+	9.10909	6.6e-05	0.119	TAACAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	34	45	+	9.10909	6.6e-05	0.119	TAACAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	34	45	+	9.10909	6.6e-05	0.119	TAACAGGAAGTT
ELF1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	81	-	9.10909	6.6e-05	0.119	TAACAGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	91	-	9.10909	6.6e-05	0.119	TAACAGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	91	-	9.10909	6.6e-05	0.119	TAACAGGAAGTT
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	56	+	12.2885	6.61e-05	0.404	GGCACCTGCC
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	79	94	+	6.75862	6.61e-05	0.334	TATTGTCATGGAGACG
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	79	94	+	6.75862	6.61e-05	0.334	TATTGTCATGGAGACG
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	79	94	+	6.75862	6.61e-05	0.334	TATTGTCATGGAGACG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	79	94	+	6.75862	6.61e-05	0.334	TATTGTCATGGAGACG
FIGLA	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	21	-	11.6897	6.61e-05	0.859	CACACCTGTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	32	45	+	10.8485	6.61e-05	0.0611	TGCGTTGGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	36	49	-	10.8485	6.61e-05	0.0611	TGCGTTGGGGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	66	79	+	10.8485	6.61e-05	0.0611	TGCGTTGGGGCCTC
TCF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	31	-	12.2449	6.61e-05	0.422	CCCACCTGTC
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	31	-	12.2449	6.61e-05	0.422	CCCACCTGTC
TCF4	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	75	-	12.2449	6.61e-05	0.422	CCCACCTGTC
TCF4	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	40	49	+	12.2449	6.61e-05	0.422	CCCACCTGTC
HOXC11	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	61	-	11.5345	6.61e-05	1	AGTCATTAAAA
IRF9	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	9	23	-	-2.49091	6.61e-05	0.651	AAAGAAAGCAAAAGA
IRF9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	61	75	-	-2.49091	6.61e-05	0.651	AAAGAAAGCAAAAGA
ZIC4	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	52	66	-	10.4	6.61e-05	0.109	CCCCCCCCGCGAGTC
ZIC4	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	58	72	-	10.4	6.61e-05	0.109	GGGCTCCTGCGGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	87	101	-	10.4	6.61e-05	0.109	CCCCCCCCGCGAGTC
ZIC4	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	14	28	+	10.4	6.61e-05	0.109	CCCCCCCCGCGAGTC
ZIC4	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	43	57	+	10.4	6.61e-05	0.109	GGGCTCCTGCGGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	49	63	+	10.4	6.61e-05	0.109	CCCCCCCCGCGAGTC
Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	49	62	-	3.12195	6.61e-05	0.484	CGGGCCGAAGGTCG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	49	62	-	3.12195	6.61e-05	0.484	CGGGCCGAAGGTCG
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	49	62	-	3.12195	6.61e-05	0.484	CGGGCCGAAGGTCG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	49	62	-	3.12195	6.61e-05	0.484	CGGGCCGAAGGTCG
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	11	20	+	11.2131	6.61e-05	0.718	GATGGGGGCA
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	11	20	+	11.2131	6.61e-05	0.718	GATGGGGGCA
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	71	80	+	11.2131	6.61e-05	0.718	GATGGGGGCA
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	71	80	+	11.2131	6.61e-05	0.718	GATGGGGGCA
GCM2	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	95	104	+	11.2131	6.61e-05	0.718	TATGTGGGTG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	25	38	+	9.78571	6.61e-05	0.271	GGGCCACGTCCTTC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.1724	6.61e-05	0.121	CCCGGAAATG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.1724	6.61e-05	0.121	CCCGGAAATG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	50	64	+	8.36066	6.61e-05	0.0675	AGCCCCGCCCCCGCG
Klf12	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	37	51	-	8.36066	6.61e-05	0.0675	AGCCCCGCCCCCGCG
Klf12	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	64	78	+	8.36066	6.61e-05	0.0675	AGCCCCGCCCCCGCG
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	11.5455	6.61e-05	0.166	CCCACGTGCT
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	11.5455	6.61e-05	0.166	CCCACGTGCT
HEY1	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	13	22	-	11.5455	6.61e-05	0.166	TGCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	29	38	+	11.5455	6.61e-05	0.166	GACACGCGCG
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	29	38	+	11.5455	6.61e-05	0.166	GACACGCGCG
HEY1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	11.5455	6.61e-05	0.166	CCCACGTGCT
RUNX3	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	56	65	-	11.5769	6.61e-05	0.439	AAACCACAGC
RUNX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	67	76	-	11.5769	6.61e-05	0.439	AAACCACAGC
RUNX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	67	76	-	11.5769	6.61e-05	0.439	AAACCACAGC
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	102	111	-	11.5769	6.61e-05	0.439	AAACCACAGC
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	102	111	-	11.5769	6.61e-05	0.439	AAACCACAGC
RUNX3	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	15	24	+	11.5769	6.61e-05	0.439	AAACCACAGC
ELK4	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	7	17	-	11.3455	6.61e-05	0.0653	CAACTTCCTGG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	13	24	+	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	6	17	-	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	6	17	-	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	30	+	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	34	+	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	34	+	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	14	25	-	10.8684	6.61e-05	0.0326	GCCACAGCCCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	30	41	-	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	32	43	-	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	43	54	+	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	49	60	+	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	55	66	-	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	61	72	-	10.8684	6.61e-05	0.0326	CCCCCCCCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	83	94	-	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	83	94	-	10.8684	6.61e-05	0.0326	GCCCCACCCAGC
GLIS2	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	46	59	+	8.2459	6.61e-05	0.185	CGCCCCACGCGCGG
Nr2f6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	91	104	-	8.75758	6.61e-05	0.391	AAAATCAAAGTTCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	91	104	-	8.75758	6.61e-05	0.391	AAAATCAAAGTTCA
UNCX	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.1062	6.62e-05	1	CCAATTAG
UNCX	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.1062	6.62e-05	1	CCAATTAG
UNCX	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.1062	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	2	9	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	18	25	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	29	36	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	29	36	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	29	36	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	29	36	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	23	30	-	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	23	30	-	10.54	6.62e-05	1	CCAATTAG
PRRX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	40	47	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	85	92	+	10.54	6.62e-05	1	CCAATTAG
PRRX1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	79	86	-	10.54	6.62e-05	1	CCAATTAG
GATA3	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	9	16	+	12.6727	6.62e-05	1	AGATAAAA
GATA3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	48	55	+	12.6727	6.62e-05	1	AGATAAAA
GATA3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	48	55	+	12.6727	6.62e-05	1	AGATAAAA
GATA3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.1.0	100	107	+	12.6727	6.62e-05	1	AGATAAAA
GATA3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.0.0	100	107	+	12.6727	6.62e-05	1	AGATAAAA
Foxj2	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	33	40	+	11.6452	6.62e-05	1	GTCAACAA
Foxj2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	75	82	-	11.6452	6.62e-05	1	GTCAACAA
Foxj2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	75	82	-	11.6452	6.62e-05	1	GTCAACAA
GATA3	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	51	58	-	12.6727	6.62e-05	1	AGATAAAA
GATA3	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	60	67	-	12.6727	6.62e-05	1	AGATAAAA
GATA3	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	100	107	-	12.6727	6.62e-05	1	AGATAAAA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	84	94	-	10.9828	6.62e-05	0.0504	GCGCGGGGAAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	84	94	-	10.9828	6.62e-05	0.0504	GCGCGGGGAAA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	84	94	-	10.9828	6.62e-05	0.0504	GCGCGGGGAAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	84	94	-	10.9828	6.62e-05	0.0504	GCGCGGGGAAA
RREB1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	71	90	-	3.78899	6.62e-05	0.0642	CCCCTCCCCGCCCGCCTAGC
RREB1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	25	44	+	3.78899	6.62e-05	0.0642	CCCCTCCCCGCCCGCCTAGC
IRF2	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	78	95	-	5.20183	6.62e-05	0.626	GGCAAGCGACAGCTGTAC
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	19	30	-	6.89796	6.62e-05	0.203	GATGACCTCACG
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	19	30	-	6.89796	6.62e-05	0.203	GATGACCTCACG
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	85	96	+	6.89796	6.62e-05	0.203	GATGACCTCACG
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	7	19	-	10.89	6.62e-05	1	TTTATGCAAAAAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	7	16	-	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	7	16	-	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	7	16	-	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	7	16	-	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	-	11.5366	6.62e-05	0.181	CGCACGTGAG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	-	11.5366	6.62e-05	0.181	CGCACGTGAG
TFEC	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	35	44	+	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	+	11.5366	6.62e-05	0.181	CGCACGTGAG
TFEC	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	-	11.5366	6.62e-05	0.181	CGCACGTGAG
TFEC	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	71	80	-	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	84	93	+	11.5366	6.62e-05	0.181	ATCACATGGC
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	94	103	+	11.5366	6.62e-05	0.181	GCCACATGAT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	94	103	+	11.5366	6.62e-05	0.181	GCCACATGAT
TFEC	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	99	108	+	11.5366	6.62e-05	0.181	ATCACATGCC
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	-	11.5366	6.62e-05	0.181	CGCACGTGAG
EGR3	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	12	26	+	6.44828	6.62e-05	0.0412	CTCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	27	+	6.44828	6.62e-05	0.0412	TCACACCCACACGAG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	27	+	6.44828	6.62e-05	0.0412	TCACACCCACACGAG
EGR3	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	15	29	+	6.44828	6.62e-05	0.0412	CCACGCCCCCGGCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	46	60	+	6.44828	6.62e-05	0.0412	CTCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	44	58	-	6.44828	6.62e-05	0.0412	TCACACCCACACGAG
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	44	58	-	6.44828	6.62e-05	0.0412	TCACACCCACACGAG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	84	98	+	6.44828	6.62e-05	0.0412	GCCCGCCGACGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	89	103	-	6.44828	6.62e-05	0.0412	CTCCGCCGCCGCCGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	+	9.94828	6.62e-05	0.0554	AGCCCGCGAGGGC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	56	68	+	9.94828	6.62e-05	0.0554	GCCCGGCAGGGCA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	-	9.94828	6.62e-05	0.0554	CGCCTTCTGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	-	9.94828	6.62e-05	0.0554	AGCCCGCGAGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	-	9.94828	6.62e-05	0.0554	AGCCCGCGAGGGC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	73	82	+	11.2394	6.62e-05	0.156	ACCGTATGTG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	73	89	-	5.65455	6.62e-05	0.619	GGCCACGCCTGGCCTGG
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	73	89	-	5.65455	6.62e-05	0.619	GGCCACGCCTGGCCTGG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	73	89	-	5.65455	6.62e-05	0.619	GGCCACGCCTGGCCTGG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	73	89	-	5.65455	6.62e-05	0.619	GGCCACGCCTGGCCTGG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	16	26	+	11.7727	6.62e-05	1	AAGAAAACAGG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	28	38	+	11.7727	6.62e-05	1	AAGAAAACAGG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	77	87	-	11.7727	6.62e-05	1	AAGAAAACAGG
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	90	100	-	11.7727	6.62e-05	1	AAGAAAACAGG
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	63	73	-	11.3673	6.62e-05	0.153	CTCAGGTGACA
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	63	73	-	11.3673	6.62e-05	0.153	CTCAGGTGACA
USF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	63	73	-	11.3673	6.62e-05	0.153	CTCAGGTGACA
USF2	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	70	80	-	11.3673	6.62e-05	0.153	CTCAGGTGACA
USF2	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	41	51	+	11.3673	6.62e-05	0.153	CTCAGGTGACA
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	88	98	+	11.3673	6.62e-05	0.153	ACCATGTGAGT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	11	21	-	10.5517	6.62e-05	0.0222	CCCCCACCCAT
SP4	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	33	49	+	3.89091	6.62e-05	0.0301	GAGGCCACTCCCAGGGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	66	82	-	3.89091	6.62e-05	0.0301	GAGGCCACTCCCAGGGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	66	82	-	3.89091	6.62e-05	0.0301	GAGGCCACTCCCAGGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	90	106	-	3.89091	6.62e-05	0.0301	CTCGCTCCGCCTCCGCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	90	106	-	3.89091	6.62e-05	0.0301	CTCGCTCCGCCTCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	90	106	-	3.89091	6.62e-05	0.0301	CTCGCTCCGCCTCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	90	106	-	3.89091	6.62e-05	0.0301	CTCGCTCCGCCTCCGCG
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	+	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	+	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	-	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	-	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	-	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	-	10.6727	6.62e-05	0.225	CATGAGTCATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	-	10.6727	6.62e-05	0.225	CATGAGTCATC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	29	39	+	11.0813	6.62e-05	0.0232	ACCACGCCCTG
SP3	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	34	44	+	11.0813	6.62e-05	0.0232	ACCACGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	67	77	+	11.0813	6.62e-05	0.0232	ACCACGCCCTG
SP3	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	86	96	+	11.0813	6.62e-05	0.0232	TCCACACCCAG
SP3	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	38	48	-	11.0813	6.62e-05	0.0232	ACCACGCCCTG
SP3	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	71	81	-	11.0813	6.62e-05	0.0232	ACCACGCCCTG
SP3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	96	106	-	11.0813	6.62e-05	0.0232	ACCACGCCCTG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	28	38	-	10.9344	6.63e-05	0.0669	CCGGAAATACG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	28	38	-	10.9344	6.63e-05	0.0669	CCGGAAATACG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	11	21	+	10.1091	6.63e-05	0.0207	AAGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	11	21	+	10.1091	6.63e-05	0.0207	AAGCAGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	19	29	+	10.1091	6.63e-05	0.0207	GCCCACGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	43	53	-	10.1091	6.63e-05	0.0207	AAGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	43	53	-	10.1091	6.63e-05	0.0207	AAGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	96	-	10.1091	6.63e-05	0.0207	GCCCACGCGCC
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	18	27	+	11.0857	6.63e-05	0.111	ATAGGAAGTG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	18	27	+	11.0857	6.63e-05	0.111	ATAGGAAGTG
ERF	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	39	48	-	11.0857	6.63e-05	0.111	ATAGGAAGTG
ERF	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	74	83	-	11.0857	6.63e-05	0.111	ATAGGAAGTG
CENPB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	34	48	+	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	34	48	+	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	34	48	+	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	34	48	+	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	21	35	-	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	80	94	+	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
CENPB	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	67	81	-	10.4808	6.63e-05	0.848	CCCGGAAGTGACGTA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	39	51	+	2.2449	6.63e-05	0.253	GGGGAAATCCCAG
GLIS1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	15	30	+	-9.25	6.63e-05	0.329	CCGCCCCCCACCTCGC
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	1	14	-	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	7	20	-	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	7	20	-	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	95	108	+	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	101	114	+	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	101	114	+	5.52041	6.63e-05	0.365	TGGCCGGGTGCCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	72	83	-	10.7424	6.63e-05	0.109	CGACGTCCGGAC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	72	83	-	10.7424	6.63e-05	0.109	CGACGTCCGGAC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	72	83	-	10.7424	6.63e-05	0.109	CGACGTCCGGAC
HSF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	71	83	-	7.09836	6.63e-05	1	TTGCGGAAGTTTC
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	71	83	-	7.09836	6.63e-05	1	TTGCGGAAGTTTC
HSF1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	76	88	-	7.09836	6.63e-05	1	TTGCGGAAGTTTC
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	27	39	+	7.09836	6.63e-05	1	TTGCGGAAGTTTC
HSF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	27	39	+	7.09836	6.63e-05	1	TTGCGGAAGTTTC
HSF1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	32	44	+	7.09836	6.63e-05	1	TTGCGGAAGTTTC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	14	34	-	9.67347	6.63e-05	0.0197	TGGGGAAGAGGGAAGAGTGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	28	48	-	9.67347	6.63e-05	0.0197	AAAAAAAGGAAAGGGGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	28	48	-	9.67347	6.63e-05	0.0197	AAAAAAAGGAAAGGGGGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	37	57	-	9.67347	6.63e-05	0.0197	GGGAGTTGGGGGCGGGGGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	40	60	-	9.67347	6.63e-05	0.0197	GGTGGGGTGGGGGGAGTGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	62	82	-	9.67347	6.63e-05	0.0197	GATGAAGGCAGCGGCAGGGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:91233648..91233762,-__2730.1.0.0	75	95	-	9.67347	6.63e-05	0.0197	AGGGGAGTGGGAAGTGAGATA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:91233666..91233780,+__877.1.0.0	2	22	+	9.67347	6.63e-05	0.0197	AGGGGAGTGGGAAGTGAGATA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	8	28	+	9.67347	6.63e-05	0.0197	AAGGGAACTGGGGAGGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	19	39	+	9.67347	6.63e-05	0.0197	GGGGAAGAGCCGGGCTGGGGG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr8:91233648..91233762,+__876.1.0.0	20	40	+	9.67347	6.63e-05	0.0197	AGGGGAGTGGGAAGTGAGATA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	44	64	+	9.67347	6.63e-05	0.0197	TGGGGAAGAGGGAAGAGTGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	44	64	+	9.67347	6.63e-05	0.0197	TGGGGAAGAGGGAAGAGTGAC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	44	64	+	9.67347	6.63e-05	0.0197	TGGGGAAGAGGGAAGAGTGAC
Rxra	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	3	16	-	3.10976	6.63e-05	0.484	GGGAGTAAAGGTCG
Rxra	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	99	112	+	3.10976	6.63e-05	0.484	GGGAGTAAAGGTCG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	25	42	+	-14.1053	6.63e-05	0.0532	GGGAGGAGGGCTTGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	25	42	+	-14.1053	6.63e-05	0.0532	GGGAGGAGGGCTTGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	56	73	-	-14.1053	6.63e-05	0.0532	TGAGGGAGGGCAGCCTGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	56	73	-	-14.1053	6.63e-05	0.0532	TGAGGGAGGGCAGCCTGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	56	73	-	-14.1053	6.63e-05	0.0532	TGAGGGAGGGCAGCCTGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	92	109	-	-14.1053	6.63e-05	0.0532	GGCAGGCCGGCAGGCAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	92	109	-	-14.1053	6.63e-05	0.0532	GGCAGGCCGGCAGGCAGC
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	38	50	+	9.81967	6.63e-05	0.622	GCATTATGCAACC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	38	50	+	9.81967	6.63e-05	0.622	GCATTATGCAACC
ETV1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.4364	6.63e-05	0.118	CCCGGAAGCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
ETV1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.4364	6.63e-05	0.118	CCCGGAAGTC
KLF14	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	27	40	-	8.84483	6.63e-05	0.0354	AGCCCCGCCCTTTG
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	86	102	-	-5.25843	6.63e-05	1	TGAGTTCCTAGGTAAGC
E2F6	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	9	19	-	11.2241	6.63e-05	0.0697	GGGTGGGAGCC
E2F6	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	70	80	-	11.2241	6.63e-05	0.0697	GGGTGGGAGCC
E2F6	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	35	45	+	11.2241	6.63e-05	0.0697	GGGTGGGAGCC
E2F6	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	96	106	+	11.2241	6.63e-05	0.0697	GGGTGGGAGCC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	71	84	+	5.67347	6.63e-05	0.0723	GGGGGCGAGAGGGT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	26	37	+	2.75862	6.63e-05	0.298	CGGCGCGCGCCT
HES5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	26	37	+	2.75862	6.63e-05	0.298	CGGCGCGCGCCT
HES5	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	78	89	-	2.75862	6.63e-05	0.298	CGGCGCGCGCCT
BCL6B	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	48	64	+	-16.4143	6.63e-05	0.957	TAATTTCTGGCAATTAA
LHX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	11.4444	6.63e-05	1	TCTAATTAGG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	80	94	-	9.63636	6.64e-05	0.318	CGAGTTTTCGTTTTC
Nr5a2	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	36	50	+	10.2414	6.64e-05	0.504	GATTCCCAGGTCACC
Nr5a2	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	65	79	-	10.2414	6.64e-05	0.504	GATTCCCAGGTCACC
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	12	22	+	11.1731	6.64e-05	0.0758	AGCCGCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	24	34	+	11.1731	6.64e-05	0.0758	CGCCGGAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	24	34	+	11.1731	6.64e-05	0.0758	CGCCGGAGGGA
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	93	103	-	11.1731	6.64e-05	0.0758	AGCCGCAGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	95	105	-	11.1731	6.64e-05	0.0758	AGCTCCAGGCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	16	30	+	10.7885	6.64e-05	0.341	ACAGGCTAGAGGTCA
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	62	76	-	10.7885	6.64e-05	0.341	ACAGGCTAGAGGTCA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	70	81	-	10.6207	6.64e-05	0.365	CCGCCCACCGTG
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	11	21	+	11.2879	6.64e-05	0.362	GGCCCCCATTT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	11	21	+	11.2879	6.64e-05	0.362	GGCCCCCATTT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	11	21	+	11.2879	6.64e-05	0.362	GGCCCCCATTT
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	11	21	+	11.2879	6.64e-05	0.362	GGCCCCCATTT
IRF9	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	59	73	+	-2.50909	6.64e-05	0.651	CACGGAAATGAAAGT
SP3	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	8	18	+	11.0732	6.64e-05	0.0232	ACCCCACCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	90	100	+	11.0732	6.64e-05	0.0232	ACCCCACCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	15	25	-	11.0732	6.64e-05	0.0232	ACCCCACCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	37	47	-	11.0732	6.64e-05	0.0232	ACCCCACCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	37	47	-	11.0732	6.64e-05	0.0232	ACCCCACCTCC
SP3	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	97	107	-	11.0732	6.64e-05	0.0232	ACCCCACCTCC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	11	21	+	11.5818	6.64e-05	0.721	AAACACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	11	21	+	11.5818	6.64e-05	0.721	AAACACTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	54	64	+	11.5818	6.64e-05	0.721	AAACACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	54	64	+	11.5818	6.64e-05	0.721	AAACACTCAGC
Nkx2-5(var.2)	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	94	104	-	11.5818	6.64e-05	0.721	AAACACTCAGC
DBP	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	+	11.3585	6.64e-05	1	TGTGACGTAAGC
DBP	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	+	11.3585	6.64e-05	1	TGTGACGTAAGC
MTF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	15	28	+	6.36585	6.64e-05	0.5	CCAGCACACGGCAC
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	15	28	+	6.36585	6.64e-05	0.5	CCAGCACACGGCAC
RFX3	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	60	75	+	9.30303	6.64e-05	0.368	CGTTTCCAGGGCCACC
RFX3	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	40	55	-	9.30303	6.64e-05	0.368	CGTTTCCAGGGCCACC
REST	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	23	43	+	5.17347	6.64e-05	0.224	ACCACCACCAGGGGCTGGGTC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	91	111	+	5.17347	6.64e-05	0.224	CTGGGCACCGCGGCCGGAGCT
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	91	111	+	5.17347	6.64e-05	0.224	CTGGGCACCGCGGCCGGAGCT
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	65	78	+	11.25	6.64e-05	0.223	TGTGCATGAGTCAG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	37	50	-	11.25	6.64e-05	0.223	TGTGCATGAGTCAG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	9	20	-	11.2909	6.64e-05	0.0577	CGCCCTACGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	32	+	11.2909	6.64e-05	0.0577	TGCCCCCCGGGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	32	+	11.2909	6.64e-05	0.0577	TGCCCCCCGGGG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	27	38	-	11.2909	6.64e-05	0.0577	TGCCCCCCGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	30	41	-	11.2909	6.64e-05	0.0577	CGCCCGCCGCCA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	34	45	-	11.2909	6.64e-05	0.0577	CCCCCGCAGCCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	88	+	11.2909	6.64e-05	0.0577	TGCCCCCCGGGG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	83	94	-	11.2909	6.64e-05	0.0577	AGCCCGCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	83	94	-	11.2909	6.64e-05	0.0577	AGCCCGCAGCCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	83	94	-	11.2909	6.64e-05	0.0577	TGCCCCCCGGGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	10	20	+	11.8163	6.64e-05	0.186	GGCAGCTGACA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	10	20	+	11.8163	6.64e-05	0.186	GGCAGCTGACA
POU5F1B	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	22	30	+	11.2743	6.64e-05	1	TATGCAGAT
POU5F1B	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	39	47	+	11.2743	6.64e-05	1	TATGCAGAT
POU5F1B	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	68	76	-	11.2743	6.64e-05	1	TATGCAGAT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	68	80	-	10.3607	6.64e-05	0.0589	CGCCCAGGGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	68	80	-	10.3607	6.64e-05	0.0589	CGCCCAGGGGGGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	-	10.3607	6.64e-05	0.0589	CGCCTGTGGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	-	10.3607	6.64e-05	0.0589	TGCCGCACAGGCA
NR2C2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	30	44	+	9.41429	6.64e-05	0.122	AGGGGTGGGGGGGAA
NR2C2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	71	85	-	9.41429	6.64e-05	0.122	AGGGGTGGGGGGGAA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	73	87	-	9.41429	6.64e-05	0.122	CGGTGTCTGAGGTGA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	98	112	-	9.41429	6.64e-05	0.122	GCGGGGCGGAGGCGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	4	18	-	10.4483	6.65e-05	0.0148	CCTCTGCCCCCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	41	+	10.4483	6.65e-05	0.0148	CTCCCACCCCCAGAT
SP2	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	20	34	-	10.4483	6.65e-05	0.0148	CCCCCACCCCTGAGA
SP2	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	35	49	+	10.4483	6.65e-05	0.0148	ATTCCTCCCCTCCGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	36	50	-	10.4483	6.65e-05	0.0148	ATACCGCCTCCTCCA
SP2	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	54	68	+	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	43	57	-	10.4483	6.65e-05	0.0148	ATTCCTCCCCTCCGG
SP2	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	58	72	+	10.4483	6.65e-05	0.0148	ATTCCTCCCCTCCGG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	47	61	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	47	61	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	63	77	+	10.4483	6.65e-05	0.0148	ATACCGCCTCCTCCA
SP2	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	70	84	+	10.4483	6.65e-05	0.0148	CCCCCACCCCTGAGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	60	74	-	10.4483	6.65e-05	0.0148	TCTCCTCCTCTCCTC
SP2	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	66	80	-	10.4483	6.65e-05	0.0148	ATTCCTCCCCTCCGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	67	81	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	67	81	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	67	81	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	67	81	-	10.4483	6.65e-05	0.0148	GGCCCACCTCTATGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	94	108	-	10.4483	6.65e-05	0.0148	TCTCCTCCTCTCCTC
Arid5a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	56	69	+	11.2024	6.65e-05	1	CTAATATTAGCATG
Arid5a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	56	69	+	11.2024	6.65e-05	1	CTAATATTAGCATG
ZBTB7A	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	91	102	-	10.9286	6.65e-05	0.217	TCCGACCCCCTA
SP8	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	1	12	+	10.8553	6.65e-05	0.0327	GCACCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	103	114	-	10.8553	6.65e-05	0.0327	GCACCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	103	114	-	10.8553	6.65e-05	0.0327	GCACCGCCCAGC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	+	11.2143	6.65e-05	0.0866	TGGCCCGAGGCT
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	26	42	-	9.82653	6.65e-05	0.368	GGGTGACGCAGGCCTCA
RUNX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	44	52	+	11.6538	6.65e-05	0.512	GAACCGCAA
RUNX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	44	52	+	11.6538	6.65e-05	0.512	GAACCGCAA
RUNX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	44	52	+	11.6538	6.65e-05	0.512	GAACCGCAA
ETV5	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	11.2727	6.65e-05	0.116	ACCGGAAGAG
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	11.2727	6.65e-05	0.116	ACCGGAAGAG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	30	44	+	8.34426	6.65e-05	0.0677	TGGCACACCCTCCTG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	30	44	+	8.34426	6.65e-05	0.0677	TGGCACACCCTCCTG
Klf12	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	45	59	+	8.34426	6.65e-05	0.0677	GGCCGCACCCTGCTC
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	29	39	-	11.3818	6.65e-05	0.142	AGCAGGAAATG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	29	39	-	11.3818	6.65e-05	0.142	AGCAGGAAATG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	-	11.3273	6.65e-05	0.0551	TCCCTCGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	+	11.3273	6.65e-05	0.0551	TCCCTCGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	+	11.3273	6.65e-05	0.0551	TCCCTCGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	+	11.3273	6.65e-05	0.0551	TCCCTCGGGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	+	11.3273	6.65e-05	0.0551	TCCCTCGGGCA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	81	94	-	5.66327	6.65e-05	0.0723	GCGGGCCGAGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	101	114	-	5.66327	6.65e-05	0.0723	GGGGCGGGCAGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	101	114	-	5.66327	6.65e-05	0.0723	GGGGCGGGCAGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	101	114	-	5.66327	6.65e-05	0.0723	GGGGCGGGCAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	101	114	-	5.66327	6.65e-05	0.0723	GGGGCGGGCAGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	43	56	+	5.66327	6.65e-05	0.0723	GGGGGTGAGGGGAG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr14:56263371..56263485,-__292.1.0.0	65	78	+	8.22951	6.65e-05	0.185	TCCCCCACACAAGC
Bcl6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	12	25	-	10.8226	6.65e-05	0.465	AGTCCTGGAGAGGA
Bcl6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	12	25	-	10.8226	6.65e-05	0.465	AGTCCTGGAGAGGA
PAX5	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	38	56	-	10.5645	6.65e-05	0.15	TCGAGCTGCAAAGCGGGGC
NFIX	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	7	15	+	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	97	105	+	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	97	105	+	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	97	105	+	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	97	105	+	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	17	25	-	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	100	108	-	10.5106	6.65e-05	0.758	CCTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	100	108	-	10.5106	6.65e-05	0.758	CCTGCCAAG
GLIS3	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	28	41	-	3.84848	6.65e-05	0.379	GACCCTCTTCGGAG
GLIS3	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	74	87	+	3.84848	6.65e-05	0.379	GACCCTCTTCGGAG
HOXC11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	20	30	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	20	30	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	20	30	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	39	49	-	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	66	76	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	66	76	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	66	76	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	66	76	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	66	76	+	11.5172	6.65e-05	1	AATCATAAAAC
HOXC11	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	85	95	-	11.5172	6.65e-05	1	AATCATAAAAC
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	73	83	-	11.3103	6.65e-05	0.285	GTCTGAGGTTT
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	103	113	+	11.3103	6.65e-05	0.285	GGCTGTGGCCA
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	20	39	-	3.77064	6.65e-05	0.0642	CCCCACACCCGCCCACATGG
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	36	55	-	3.77064	6.65e-05	0.0642	CCCCACACCCGCCCACATGG
RREB1	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	78	97	-	3.77064	6.65e-05	0.0642	CCACACATCAGCAGAAATGA
RREB1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	60	79	+	3.77064	6.65e-05	0.0642	CCCCACACCCGCCCACATGG
RREB1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	76	95	+	3.77064	6.65e-05	0.0642	CCCCACACCCGCCCACATGG
E2F7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	31	44	-	-4.55738	6.66e-05	1	AGCTCCCGCCAGAG
E2F7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	31	44	-	-4.55738	6.66e-05	1	AGCTCCCGCCAGAG
ERG	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	65	74	-	11.5273	6.66e-05	0.131	AGCGGAAGTA
ERG	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	11.5273	6.66e-05	0.131	TCCGGAAGCA
IRF8	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	68	81	-	-2.4	6.66e-05	0.752	CTGAAAGAGAAAAC
ETV2	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	33	43	+	10.4918	6.66e-05	0.176	GACAGGAAGTT
ETV2	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	57	67	+	10.4918	6.66e-05	0.176	GACAGGAAGTT
ETV2	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	58	-	10.4918	6.66e-05	0.176	GACAGGAAGTT
ETV2	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	82	-	10.4918	6.66e-05	0.176	GACAGGAAGTT
SRF	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	55	70	+	5.22951	6.66e-05	1	CCTCCCTATATGGGTG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	101	113	-	9.93103	6.66e-05	0.0554	TCCCGCCCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	101	113	-	9.93103	6.66e-05	0.0554	TCCCGCCCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	101	113	-	9.93103	6.66e-05	0.0554	TCCCGCCCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	101	113	-	9.93103	6.66e-05	0.0554	TCCCGCCCGGGCC
SP4	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	1	17	-	3.87273	6.66e-05	0.0301	CTTTCCCCTCCCCCCTT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	15	31	-	3.87273	6.66e-05	0.0301	CTGGCTCCGCACCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	15	31	-	3.87273	6.66e-05	0.0301	CTGGCTCCGCACCCGCC
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	15	31	+	-2.33333	6.66e-05	0.861	AGGTCACCGCAGGGGAA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	15	31	+	-2.33333	6.66e-05	0.861	AGGTCACCGCAGGGGAA
EGR4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	42	57	+	10.2909	6.66e-05	0.0398	CCCCGCCCCTGCCCGG
EGR4	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	57	72	+	10.2909	6.66e-05	0.0398	GCCCGCCCCCGGCTCC
EGR4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	57	72	+	10.2909	6.66e-05	0.0398	CCCCGCCCCCTCCCCC
EGR4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	57	72	+	10.2909	6.66e-05	0.0398	CCCCTCCCTCCCCCTT
EGR4	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	43	58	-	10.2909	6.66e-05	0.0398	GCCCGCCCCCGGCTCC
EGR4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	43	58	-	10.2909	6.66e-05	0.0398	CCCCTCCCTCCCCCTT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	64	79	+	10.2909	6.66e-05	0.0398	CCGCGCCCGCCCACCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	56	71	-	10.2909	6.66e-05	0.0398	CTCCGCCCCCCGGCAT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	56	71	-	10.2909	6.66e-05	0.0398	CTCCGCCCCCCGGCAT
EGR4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	58	73	-	10.2909	6.66e-05	0.0398	CCCCGCCCCTGCCCGG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	88	101	-	5.5	6.66e-05	0.365	TGGCCGGCCGACAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.2.1	88	101	-	5.5	6.66e-05	0.365	TGGCCGGCCGACAA
Myog	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	34	44	-	11.8571	6.66e-05	0.164	GACAGGTGCAT
Myog	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	71	81	+	11.8571	6.66e-05	0.164	GACAGGTGCAT
Myog	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	71	81	+	11.8571	6.66e-05	0.164	GACAGGTGCAT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	+	10.0656	6.66e-05	0.0644	TCCCCGAGAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	-	10.0656	6.66e-05	0.0644	TCCCCAGAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	-	10.0656	6.66e-05	0.0644	TCCCCAGAGGGGG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	-	10.0656	6.66e-05	0.0644	TCCCCGAGAGGGA
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	8.17308	6.66e-05	0.198	CACACGTGAT
TBX21	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	53	62	+	10.8182	6.66e-05	1	TGGGTGTGAT
TBX21	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	53	62	-	10.8182	6.66e-05	1	TGGGTGTGAT
ELF1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	84	95	-	9.07273	6.66e-05	0.12	CTTCCGGAAATG
NRF1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	7	17	+	10.0909	6.67e-05	0.0207	GAGGAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	34	44	+	10.0909	6.67e-05	0.0207	CCACCTGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	34	44	+	10.0909	6.67e-05	0.0207	CCACCTGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	44	54	-	10.0909	6.67e-05	0.0207	GAGGAGGCGCA
NRF1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	61	71	+	10.0909	6.67e-05	0.0207	GAGGAGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr13:33112927..33113041,-__1243.1.0.0	67	77	-	10.0909	6.67e-05	0.0207	GCGTTTGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	71	81	-	10.0909	6.67e-05	0.0207	CCACCTGCGCC
Myc	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	30	39	+	11.9455	6.67e-05	0.443	CCATGTGGGG
Myc	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	87	96	+	11.9455	6.67e-05	0.443	CCATGTGGGG
Myc	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	94	103	+	11.9455	6.67e-05	0.443	CCACGTGCGG
Myc	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	12	21	-	11.9455	6.67e-05	0.443	CCACGTGCGG
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	92	102	-	10.8788	6.67e-05	0.0481	ACCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	92	102	-	10.8788	6.67e-05	0.0481	ACCCACTCCCA
PKNOX2	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	11	22	+	3.11475	6.67e-05	0.598	GGACAGGTGTGG
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	+	3.11475	6.67e-05	0.598	TGACAAATGTGA
PKNOX2	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	-	3.11475	6.67e-05	0.598	TGACAAATGTGA
REST	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	87	107	-	5.16327	6.67e-05	0.224	CGCAGGACCCCGGCCGCAGCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	18	28	+	10.9615	6.67e-05	0.017	CTCCCTCCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	21	31	+	10.9615	6.67e-05	0.017	ATCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	18	28	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	18	28	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	20	30	-	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	33	43	+	10.9615	6.67e-05	0.017	CTCCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	33	43	+	10.9615	6.67e-05	0.017	CTCCCTCCCTT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	33	43	+	10.9615	6.67e-05	0.017	CTCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	24	34	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	24	34	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	24	34	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	24	34	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	25	35	-	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	25	35	-	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	26	36	-	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	39	49	+	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	39	49	+	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	37	47	-	10.9615	6.67e-05	0.017	ACCCCTCCTTC
SP1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	79	89	+	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	85	95	+	10.9615	6.67e-05	0.017	TCCCCTCCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	91	101	+	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	91	101	+	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	91	101	+	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	91	101	+	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	97	107	-	10.9615	6.67e-05	0.017	ATCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	97	107	-	10.9615	6.67e-05	0.017	ATCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	103	113	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	103	113	-	10.9615	6.67e-05	0.017	CCCCCTCCTTT
Hnf4a	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	25	40	+	3.14545	6.67e-05	0.49	AGGAGTAAAGTTTACC
IRF2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	60	77	-	5.17431	6.67e-05	0.626	TAAAAATGAAATCTTCAC
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	58	72	+	10.8649	6.67e-05	0.188	AGAGGGTAAAGGTCT
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	43	57	-	10.8649	6.67e-05	0.188	AGAGGGTAAAGGTCT
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	18	35	-	-1.87931	6.67e-05	0.937	GGTGTGCTGGGACATGTA
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	18	35	-	-1.87931	6.67e-05	0.937	GGTGTGCTGGGACATGTA
ZIC4	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	2	16	+	10.3818	6.67e-05	0.109	TCCACCCCGGCGCGC
CLOCK	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	+	11.3333	6.67e-05	0.585	GACACGTGGG
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	+	11.3333	6.67e-05	0.585	GACACGTGGG
CLOCK	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	-	11.3333	6.67e-05	0.585	GACACGTGGG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	16	25	-	11.3483	6.67e-05	0.93	CTTCTGGCTT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	42	59	-	-14.1711	6.67e-05	0.0533	GGAAGAAGAAGAGGAAAC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	1	12	+	10.2787	6.67e-05	0.135	AAAGCGGAAGCG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	1	12	+	10.2787	6.67e-05	0.135	AAAGCGGAAGCG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	1	12	+	10.2787	6.67e-05	0.135	AAAGCGGAAGCG
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	1	12	+	10.2787	6.67e-05	0.135	AAAGCGGAAGCG
EHF	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	114	-	10.2787	6.67e-05	0.135	AAAGCGGAAGCG
GRHL1	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	43	54	+	10.7241	6.67e-05	1	AAAACCAGATTT
GRHL1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	65	76	-	10.7241	6.67e-05	1	AAAACATGTTTC
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	71	85	-	10.6383	6.67e-05	0.324	GTAACTGACGTCATC
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	71	85	-	10.6383	6.67e-05	0.324	GTAACTGACGTCATC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	71	85	-	10.6383	6.67e-05	0.324	GTAACTGACGTCATC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	24	43	+	3.76147	6.67e-05	0.0642	CCGCCCCCGACCCGCCCCGT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	24	43	+	3.76147	6.67e-05	0.0642	CCGCCCCCGACCCGCCCCGT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	34	44	+	10.6182	6.67e-05	0.216	TGTTGACTCAG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	29	44	-	-9.28846	6.67e-05	0.329	TGGCCCTCCGCGATTG
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	29	44	-	-9.28846	6.67e-05	0.329	TGGCCCTCCGCGATTG
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	29	44	-	-9.28846	6.67e-05	0.329	TGGCCCTCCGCGATTG
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	29	44	-	-9.28846	6.67e-05	0.329	TGGCCCTCCGCGATTG
GLIS1	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	71	86	+	-9.28846	6.67e-05	0.329	TGGCCCTCCGCGATTG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	28	38	+	10.9655	6.67e-05	0.0506	TGGCGGGGGGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	21	31	-	10.9655	6.67e-05	0.0506	TGGCGGGGGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	70	80	-	10.9655	6.67e-05	0.0506	TGGCGGGGGGG
CEBPB	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	+	11.62	6.68e-05	0.821	ATTACGTAAT
CEBPB	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	-	11.62	6.68e-05	0.821	ATTACGTAAT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	22	35	+	8.82759	6.68e-05	0.0354	CACCCCACCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	22	35	+	8.82759	6.68e-05	0.0354	CACCCCACCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	22	35	+	8.82759	6.68e-05	0.0354	CACCCCACCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	22	35	+	8.82759	6.68e-05	0.0354	CACCCCACCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	22	35	+	8.82759	6.68e-05	0.0354	CACCCCACCCCCCC
ETV6	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	49	58	+	11.3846	6.68e-05	0.111	GGAGGAAGTT
ETV6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	61	70	+	11.3846	6.68e-05	0.111	GCCGGAAATG
ETV6	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	61	70	+	11.3846	6.68e-05	0.111	GCCGGAAATG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	30	39	-	11.3846	6.68e-05	0.111	GCCGGAAATG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	30	39	-	11.3846	6.68e-05	0.111	GCCGGAAATG
ETV6	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	55	-	11.3846	6.68e-05	0.111	GCCGGAAATG
ETV6	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	57	66	-	11.3846	6.68e-05	0.111	GGAGGAAGTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	70	81	-	10.8421	6.68e-05	0.0328	GCACCACCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	70	81	-	10.8421	6.68e-05	0.0328	GCACCACCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	70	81	-	10.8421	6.68e-05	0.0328	GCACCACCCACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	23	33	+	11.4681	6.68e-05	0.257	TGTGATTCACT
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	3	13	+	11.1091	6.68e-05	0.0702	ACCCTGCGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	45	55	+	11.1091	6.68e-05	0.0702	ACCCTGCGGCT
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	60	70	-	11.1091	6.68e-05	0.0702	ACCCTGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	95	105	-	11.1091	6.68e-05	0.0702	AGCTCCAGGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	102	112	-	11.1091	6.68e-05	0.0702	ACCCTGCGGCT
LIN54	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	61	69	+	11.6508	6.68e-05	1	GTTTGAATC
LIN54	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	61	69	+	11.6508	6.68e-05	1	GTTTGAATC
LIN54	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	93	101	+	11.6508	6.68e-05	1	GTTTGAATC
LIN54	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	93	101	+	11.6508	6.68e-05	1	GTTTGAATC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	2	12	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	2	12	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	2	12	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	3	13	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	3	13	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	16	26	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	23	33	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	23	33	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	23	33	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	15	25	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	25	35	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	25	35	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	25	35	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	25	35	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	26	36	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	18	28	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	20	30	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	34	44	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	34	44	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	26	36	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	30	40	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	30	40	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	45	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	45	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	41	51	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	55	65	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	64	74	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	79	89	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	87	97	+	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	82	92	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
KLF16	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	89	99	-	10.5345	6.68e-05	0.0222	CCCCCGCCCCG
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	43	59	-	9.81633	6.68e-05	0.368	GGGTGGGGAGGGGGACA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	77	94	+	-14.1842	6.68e-05	0.0533	GGAGGGGAGGCAGAGAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	21	38	-	-14.1842	6.68e-05	0.0533	GGAGGGGAGGCAGAGAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	21	38	-	-14.1842	6.68e-05	0.0533	GGAGGGGAGGCAGAGAAA
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	55	64	-	9.95804	6.68e-05	0.111	CACACGCGAC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	55	64	-	9.95804	6.68e-05	0.111	CACACGCGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	55	64	-	9.95804	6.68e-05	0.111	CACACGCGAC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	55	64	-	9.95804	6.68e-05	0.111	CACACGCGAC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	55	64	-	9.95804	6.68e-05	0.111	CACACGCGAC
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	52	69	-	9.19512	6.68e-05	0.194	GGGCCTGGGATTGGCTGG
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	52	69	-	9.19512	6.68e-05	0.194	GGGCCTGGGATTGGCTGG
NFYB	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	16	30	+	10.6538	6.68e-05	0.181	CCGCGGCCCAATCAC
NFYB	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	37	51	-	10.6538	6.68e-05	0.181	CCGCGGCCCAATCAC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	6	19	-	6.38298	6.68e-05	0.0995	TCCCTCCTACTGTT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	22	35	-	6.38298	6.68e-05	0.0995	GCCTACCTGCCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	22	35	-	6.38298	6.68e-05	0.0995	GCCTACCTGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	51	64	+	6.38298	6.68e-05	0.0995	TCCCCCGCGCGGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	51	64	+	6.38298	6.68e-05	0.0995	TCCCCCGCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	51	64	+	6.38298	6.68e-05	0.0995	TCCCCCGCGCGGCG
HINFP	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	27	38	-	10.7273	6.68e-05	0.109	CGGGGTGCGCGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	44	57	+	11.3276	6.68e-05	0.324	CTTCCCGGAAAACG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	44	57	+	11.3276	6.68e-05	0.324	CTTCCCGGAAAACG
Stat4	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	58	71	-	11.3276	6.68e-05	0.324	CTTCCCGGAAAACG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	9	23	+	9.62121	6.68e-05	0.318	TAAATTTCCATTTCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	9	23	+	9.62121	6.68e-05	0.318	TAAATTTCCATTTCT
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	61	72	-	11.1935	6.68e-05	0.281	TCGCCCACCCCC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	7	16	-	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	-	10.0517	6.68e-05	0.249	GTCATGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	41	50	-	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	56	65	+	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	56	65	+	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	58	-	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	58	-	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	64	73	+	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	64	73	+	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	64	73	+	10.0517	6.68e-05	0.249	GTCACCTGAG
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	71	80	+	10.0517	6.68e-05	0.249	GTCACCTGAG
ETV3	WILDTYPE__Antisense.noflip.NA__chr1:3663851..3663965,-__70.1.0.0	14	23	-	11.2254	6.68e-05	0.156	TCCGGAAGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	48	57	+	11.2254	6.68e-05	0.156	TCCGGAAGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	48	57	+	11.2254	6.68e-05	0.156	TCCGGAAGCG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	48	57	+	11.2254	6.68e-05	0.156	TCCGGAAGCG
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	25	34	+	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	31	40	-	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	36	45	-	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	79	+	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	79	+	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	79	+	11.2131	6.68e-05	0.262	TGCCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	79	+	11.2131	6.68e-05	0.262	TGCCACGTGC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	23	34	-	10.6034	6.69e-05	0.365	CCGCCCCCCAAG
ZBTB7B	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	82	93	-	10.6034	6.69e-05	0.365	GAAACCCCCGAG
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	22	33	+	10.6034	6.69e-05	0.365	GAAACCCCCGAG
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	65	76	+	10.6034	6.69e-05	0.365	CCGCCCCCCAAG
Creb5	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	+	8.81818	6.69e-05	0.231	GGTTACGTCAGC
Creb5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	+	8.81818	6.69e-05	0.231	GGTTACGTCAGC
Creb5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	-	8.81818	6.69e-05	0.231	GGTTACGTCAGC
Creb5	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	-	8.81818	6.69e-05	0.231	GGTTACGTCAGC
RARA(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	85	101	-	3.2459	6.69e-05	0.563	GGGGCAGGCAAGGGAGA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	85	101	-	3.2459	6.69e-05	0.563	GGGGCAGGCAAGGGAGA
IRF8	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	74	87	-	-2.41818	6.69e-05	0.752	GGGAAAGTGAAAGG
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	80	93	+	-2.41818	6.69e-05	0.752	GTGAAACTGCAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	80	93	+	-2.41818	6.69e-05	0.752	GTGAAACTGCAAGT
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	20	34	-	9.4	6.69e-05	0.122	AAGTGTCAGAGGTGT
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	64	78	+	9.4	6.69e-05	0.122	AGGGGGCGGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	64	78	+	9.4	6.69e-05	0.122	AGGGGGCGGGGGCGG
Myod1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	73	+	11.7959	6.69e-05	0.177	ACCAGCTGCTCAG
Myod1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	73	+	11.7959	6.69e-05	0.177	ACCAGCTGCTCAG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	110	+	11.7959	6.69e-05	0.177	AACAGCTGTGGTT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	110	+	11.7959	6.69e-05	0.177	AACAGCTGTGGTT
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	44	57	-	10.8873	6.69e-05	0.277	GAAAAAAGGAAGAG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	18	34	+	3.85455	6.69e-05	0.0301	GAAGCCACGTCCCCCGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	18	34	+	3.85455	6.69e-05	0.0301	GAAGCCACGTCCCCCGT
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	24	40	+	3.85455	6.69e-05	0.0301	CCAGCCCCACCCTCACA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	24	40	+	3.85455	6.69e-05	0.0301	CCAGCCCCACCCTCACA
SP4	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	75	91	-	3.85455	6.69e-05	0.0301	CCAGCCCCACCCTCACA
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	11	25	-	6.41379	6.69e-05	0.0412	CACCACCCACTCCCT
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	46	60	+	6.41379	6.69e-05	0.0412	CACCACCCACTCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	48	62	+	6.41379	6.69e-05	0.0412	ACCCGCCTCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	48	62	+	6.41379	6.69e-05	0.0412	ACCCGCCTCCCCGCC
EGR3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	56	70	+	6.41379	6.69e-05	0.0412	CCCCACCCACTCCTT
EGR3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	45	59	-	6.41379	6.69e-05	0.0412	CCCCACCCACTCCTT
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	55	69	-	6.41379	6.69e-05	0.0412	CACCACCCACTCCCT
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	90	104	+	6.41379	6.69e-05	0.0412	CACCACCCACTCCCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	27	+	10.3443	6.69e-05	0.0589	CGCCGCGGGGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	21	33	+	10.3443	6.69e-05	0.0589	TGCCGCGTGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	27	39	+	10.3443	6.69e-05	0.0589	TCCCCGAGAGGGA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	76	88	-	10.3443	6.69e-05	0.0589	TCCCCGAGAGGGA
RUNX1	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	15	25	-	11.2931	6.69e-05	0.285	GGTTGTGGTCG
RUNX1	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	90	100	+	11.2931	6.69e-05	0.285	GGTTGTGGTCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	47	61	-	8.32787	6.69e-05	0.0679	GGCCCCACCCCAGCG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	47	61	-	8.32787	6.69e-05	0.0679	GGCCCCACCCCAGCG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	47	61	-	8.32787	6.69e-05	0.0679	GGCCCCACCCCAGCG
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	16	29	-	5.4898	6.69e-05	0.365	TGGCTCACTTCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	97	110	-	5.4898	6.69e-05	0.365	TGGCAGGCCGGCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	97	110	-	5.4898	6.69e-05	0.365	TGGCAGGCCGGCAG
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	61	81	-	5.15306	6.69e-05	0.224	GTGGTGACCCTGGGCAGGGGC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	61	81	-	5.15306	6.69e-05	0.224	GTGGTGACCCTGGGCAGGGGC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	61	81	-	5.15306	6.69e-05	0.224	GTGGTGACCCTGGGCAGGGGC
RFX5	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	99	114	-	6.72414	6.69e-05	0.336	TGTTTCTAAAGCAGCC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	34	47	-	10.8182	6.69e-05	0.0612	GAGAGCGTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	34	47	-	10.8182	6.69e-05	0.0612	GAGAGCGTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	34	47	-	10.8182	6.69e-05	0.0612	GAGAGCGTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	34	47	-	10.8182	6.69e-05	0.0612	GAGAGCGTGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	49	62	-	10.8182	6.69e-05	0.0612	CGCCGTCCGGCCTT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	49	62	-	10.8182	6.69e-05	0.0612	CGCCGTCCGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	68	81	-	10.8182	6.69e-05	0.0612	GTGGCCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	68	81	-	10.8182	6.69e-05	0.0612	GTGGCCGGAGCCTC
ETV2	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	61	71	+	10.4754	6.7e-05	0.176	CAACGGAAGTA
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	35	50	+	-9.30769	6.7e-05	0.329	TGAGCGCCCGCGCTGG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	35	50	+	-9.30769	6.7e-05	0.329	TGAGCGCCCGCGCTGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	96	-	11.3273	6.7e-05	0.0659	TTGCTTCCGGA
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	56	66	+	11.3273	6.7e-05	0.0659	CCACTTCCGTG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	56	66	+	11.3273	6.7e-05	0.0659	CCACTTCCGTG
ELK4	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	68	78	+	11.3273	6.7e-05	0.0659	CCGCTTCCTCT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	-	10.6545	6.7e-05	0.225	CGTGAGTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	-	10.6545	6.7e-05	0.225	CGTGAGTCACG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	+	10.6545	6.7e-05	0.225	CGTGAGTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	+	10.6545	6.7e-05	0.225	CGTGAGTCACG
FEV	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	56	65	+	11.4423	6.7e-05	0.141	AACGGATGTG
FEV	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	59	-	11.4423	6.7e-05	0.141	AACGGATGTG
RELA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	72	81	-	9.91837	6.7e-05	0.233	GTGGATTCCC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	58	70	-	8.31034	6.7e-05	0.167	TGACCGGAAGTAG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	58	70	-	8.31034	6.7e-05	0.167	TGACCGGAAGTAG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	78	90	-	8.31034	6.7e-05	0.167	TGACCGGAAGTAG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	78	90	-	8.31034	6.7e-05	0.167	TGACCGGAAGTAG
POU3F3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	67	79	-	10.87	6.7e-05	1	AAGATGGAAATTA
POU3F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	67	79	-	10.87	6.7e-05	1	AAGATGGAAATTA
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	9	22	+	11.2308	6.7e-05	0.223	AAGCTCTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	9	22	+	11.2308	6.7e-05	0.223	GCGGGGTGACTAAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	9	22	+	11.2308	6.7e-05	0.223	GCGGGGTGACTAAC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	3	17	-	10.431	6.7e-05	0.0149	TGCCCACCCTCCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	3	17	-	10.431	6.7e-05	0.0149	TGCCCACCCTCCCTG
SP2	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	50	64	+	10.431	6.7e-05	0.0149	ACACCGCCCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	51	65	-	10.431	6.7e-05	0.0149	ACACCGCCCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	51	65	-	10.431	6.7e-05	0.0149	ACACCGCCCTCCCTC
SP2	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	52	66	-	10.431	6.7e-05	0.0149	TCCCCTCCCTTTCTT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	74	88	+	10.431	6.7e-05	0.0149	TGCCCACCCTCCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	74	88	+	10.431	6.7e-05	0.0149	TGCCCACCCTCCCTG
NFE2	WILDTYPE__mrna.noflip.NA__chr19:44285398..44285512,-__1047.1.0.0	36	46	+	5.71429	6.7e-05	0.342	TGTGAGTCACT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	78	88	+	5.71429	6.7e-05	0.342	TGTGAGTCACT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	7	27	-	9.65306	6.7e-05	0.0197	GGGGGCAGGGTGGAGGAGTGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	7	27	-	9.65306	6.7e-05	0.0197	GGGGGCAGGGTGGAGGAGTGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	48	-	9.65306	6.7e-05	0.0197	CGTGCGGGGGGGGGGGGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	29	49	-	9.65306	6.7e-05	0.0197	GGAGAGAGGGAGGGAAGGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	46	66	-	9.65306	6.7e-05	0.0197	GAGGGGGGTGGGGTGGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	50	70	-	9.65306	6.7e-05	0.0197	AGGGAGGGGAGAGGAGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	50	70	-	9.65306	6.7e-05	0.0197	AGGGAGGGGAGAGGAGGAAAA
ZNF263	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	63	83	-	9.65306	6.7e-05	0.0197	GGGGGCAGGGTGGAGGAGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	75	95	-	9.65306	6.7e-05	0.0197	TGGGCAGGGGGACAATGGTGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	75	95	-	9.65306	6.7e-05	0.0197	TGGGCAGGGGGACAATGGTGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	75	95	-	9.65306	6.7e-05	0.0197	TGGGCAGGGGGACAATGGTGG
ZNF263	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	32	52	+	9.65306	6.7e-05	0.0197	GGGGGCAGGGTGGAGGAGTGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	51	71	+	9.65306	6.7e-05	0.0197	GAAAGAGGCGAAGCGAGAGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	51	71	+	9.65306	6.7e-05	0.0197	GAAAGAGGCGAAGCGAGAGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	64	84	+	9.65306	6.7e-05	0.0197	GAGAGAGAAAGAGAGAGAAGT
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	66	86	+	9.65306	6.7e-05	0.0197	GGAGAGAGGGAGGGAAGGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	80	100	+	9.65306	6.7e-05	0.0197	GAAAGAGGCGAAGCGAGAGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	88	108	+	9.65306	6.7e-05	0.0197	GGGGGCAGGGTGGAGGAGTGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	92	112	+	9.65306	6.7e-05	0.0197	GAGAGAGAAAGAGAGAGAAGT
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	45	+	10.0492	6.7e-05	0.0644	GGCCCGCGGGGGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	40	52	-	10.0492	6.7e-05	0.0644	GGCCCGCGGGGGC
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	70	82	-	10.0492	6.7e-05	0.0644	GGCCCGCGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	-	10.0492	6.7e-05	0.0644	CGCCCTGCAGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	-	10.0492	6.7e-05	0.0644	CGCCCTGCAGGGC
NFIA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	16	25	-	12.2667	6.7e-05	1	CCTGCCAAGA
NKX2-8	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	22	30	+	11.1346	6.7e-05	1	CCACTCGAC
Nr2f6(var.2)	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	40	54	+	-5.54286	6.7e-05	0.998	GACGTGCTGAGGTCA
Nr2f6(var.2)	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	61	75	-	-5.54286	6.7e-05	0.998	GACGTGCTGAGGTCA
THAP1	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	26	34	+	10.0526	6.71e-05	0.215	CTGCCCGTC
THAP1	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	81	89	-	10.0526	6.71e-05	0.215	CTGCCCGTC
THAP1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	91	99	-	10.0526	6.71e-05	0.215	CTGCCCGTC
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	56	72	+	10.6623	6.71e-05	1	TTACTGTAAACATCGAG
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	56	72	+	10.6623	6.71e-05	1	TTACTGTAAACATCGAG
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	41	57	-	10.6623	6.71e-05	1	TTACTGTAAACATCGAG
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	41	57	-	10.6623	6.71e-05	1	TTACTGTAAACATCGAG
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	37	53	-	-2.36364	6.71e-05	0.861	AGATCAGCTAAAGCTCT
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	38	54	-	-2.36364	6.71e-05	0.861	AGGTCAGAGGAAGGGGA
Rarb(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	83	99	+	-2.36364	6.71e-05	0.861	AGATCAGCTAAAGCTCT
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	3	16	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	3	16	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	3	16	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	3	16	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	3	16	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	4	17	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	17	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	17	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	4	17	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	4	17	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	5	18	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	5	18	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	5	18	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	6	19	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	19	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	6	19	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	20	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	20	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	24	37	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	25	38	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	26	39	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	27	40	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	28	41	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	29	42	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	29	42	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	43	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	43	-	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	38	51	+	5.63265	6.71e-05	0.0723	GTGGGCTGAGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	38	51	+	5.63265	6.71e-05	0.0723	GTGGGCTGAGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	38	51	+	5.63265	6.71e-05	0.0723	GTGGGCTGAGGGTG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	95	108	+	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	96	109	+	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	97	110	+	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	111	+	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	112	+	5.63265	6.71e-05	0.0723	GGGGGGGGGGGGGG
KLF13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	26	43	+	4.67241	6.71e-05	0.311	CTGCCTCGCCCCTTCCTG
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	26	43	+	4.67241	6.71e-05	0.311	CTGCCTCGCCCCTTCCTG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	39	51	-	9.91379	6.71e-05	0.0554	GCCCCTGGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	57	69	+	9.91379	6.71e-05	0.0554	GGCCCGGGAGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	57	69	+	9.91379	6.71e-05	0.0554	GGCCCGGGAGGGG
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	64	76	+	9.91379	6.71e-05	0.0554	GCCCCTGGCGGCG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	19	32	-	3.81818	6.71e-05	0.379	CAGCCCCCGCCACG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	19	32	-	3.81818	6.71e-05	0.379	CAGCCCCCGCCACG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	19	32	-	3.81818	6.71e-05	0.379	CAGCCCCCGCCACG
Nr2f6	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	42	-	8.72727	6.71e-05	0.391	AGAGGAAAAGGTCA
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	50	63	+	8.72727	6.71e-05	0.391	GGGGTCAGAAGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	38	52	+	10.8559	6.71e-05	0.188	CCGGGGGAAGGTGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	38	52	+	10.8559	6.71e-05	0.188	CCGGGGGAAGGTGGA
Sox1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	99	113	-	3.5	6.71e-05	1	GACACTGGGATCGTC
TP73	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	58	75	-	8.57692	6.71e-05	0.667	GGCGGGGCCTGACACGTC
TP73	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	40	57	+	8.57692	6.71e-05	0.667	GGCGGGGCCTGACACGTC
TP73	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	40	57	+	8.57692	6.71e-05	0.667	GGCGGGGCCTGACACGTC
TP73	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	40	57	+	8.57692	6.71e-05	0.667	GGCGGGGCCTGACACGTC
TP73	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	40	57	+	8.57692	6.71e-05	0.667	GGCGGGGCCTGACACGTC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	63	74	+	9.11475	6.71e-05	0.113	AACCAGGAAGGC
ELF4	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	23	34	-	9.11475	6.71e-05	0.113	ACCCAGGAAGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	+	11.0909	6.71e-05	0.0702	TCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	+	11.0909	6.71e-05	0.0702	TCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	+	11.0909	6.71e-05	0.0702	TCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	+	11.0909	6.71e-05	0.0702	TCCCTCGGGCA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	-	11.0909	6.71e-05	0.0702	TCCCTCGGGCA
IRF1	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	14	34	+	8.98387	6.71e-05	0.187	CTGTTGTTTTATTTCCGGTCT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.1.0	19	30	-	10.9143	6.71e-05	0.217	CCCGCCCCCCGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	19	30	-	10.9143	6.71e-05	0.217	CCCGCCCCCCGA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.0.0	19	30	-	10.9143	6.71e-05	0.217	CCCGCCCCCCGA
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	19	30	-	10.9143	6.71e-05	0.217	CCCGCCCCCCGA
ZBTB7A	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	50	61	-	10.9143	6.71e-05	0.217	CGCGCCGACCGC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	85	96	-	10.9143	6.71e-05	0.217	CGCGCCGACCGC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	19	30	+	10.9143	6.71e-05	0.217	CGCGCCGACCGC
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	54	65	+	10.9143	6.71e-05	0.217	CGCGCCGACCGC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	93	110	+	-14.2368	6.71e-05	0.0533	GGAAGAGGAGGAGGGAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	5	22	-	-14.2368	6.71e-05	0.0533	GGAAGAGGAGGAGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	5	22	-	-14.2368	6.71e-05	0.0533	GGAAGAGGAGGAGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	59	76	-	-14.2368	6.71e-05	0.0533	GGAGGGAGGCCTGGTTAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	59	76	-	-14.2368	6.71e-05	0.0533	GGAGGGAGGCCTGGTTAG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	52	70	-	10.5484	6.71e-05	0.15	GCGGGCAGCCGTGGAAAAC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	4	17	+	2.90909	6.71e-05	0.226	CATTTGAGGAAGTG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	31	44	-	2.90909	6.71e-05	0.226	CATTTGAGGAAGTG
Rhox11	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	33	49	-	11.1974	6.71e-05	1	GTTCGGCTGTTAACCGA
Rhox11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	33	49	-	11.1974	6.71e-05	1	GTTCGGCTGTTAACCGA
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	33	49	-	11.1974	6.71e-05	1	GTTCGGCTGTTAACCGA
REL	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	31	40	+	11.1515	6.72e-05	0.334	GGGGATATCC
SREBF1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	23	32	+	11.2927	6.72e-05	0.472	GTCAGCCCAG
SREBF1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	37	46	+	11.2927	6.72e-05	0.472	GTCAGGCCAT
SREBF1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	63	72	+	11.2927	6.72e-05	0.472	GTCACCCAAC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	41	50	+	11.9672	6.72e-05	0.333	CACACGTGTA
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	41	50	+	11.9672	6.72e-05	0.333	CACACGTGTA
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	41	50	+	11.9672	6.72e-05	0.333	CACACGTGTA
NRL	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	81	91	+	10.8269	6.72e-05	0.823	TTTCTGCTGAT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	7	17	-	10.8485	6.72e-05	0.0484	TGTCACGCCCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	29	42	-	8.81034	6.72e-05	0.0356	AGCCCCGCCTCCGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	72	85	-	8.81034	6.72e-05	0.0356	AGCCCCGCCTCCGC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	32	42	+	11.0569	6.72e-05	0.0234	GACCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	32	42	+	11.0569	6.72e-05	0.0234	GACCCGCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	32	42	-	11.0569	6.72e-05	0.0234	GACCCGCCCTC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	69	79	-	11.0569	6.72e-05	0.0234	GACCCGCCCTC
STAT3	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	58	68	+	11.0816	6.72e-05	0.306	ATTCTGGAAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	68	78	-	11.0816	6.72e-05	0.306	ATTCTGGAAAA
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	68	78	-	11.0816	6.72e-05	0.306	ATTCTGGAAAA
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	97	108	+	2.57143	6.72e-05	1	TGACAAATGACA
TFE3	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	17	26	-	11.1224	6.72e-05	0.143	ACCACGCGAC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	100	111	-	9.05455	6.72e-05	0.12	AGCGCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	100	111	-	9.05455	6.72e-05	0.12	AGCGCGGAAGCA
MAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	+	12.0192	6.72e-05	0.298	GCCACGTGGA
MAX	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	12.0192	6.72e-05	0.298	CACACGTGCA
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	12.0192	6.72e-05	0.298	CACACGTGCA
MAX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	12.0192	6.72e-05	0.298	CACACGTGCA
SP4	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	18	34	+	3.83636	6.72e-05	0.0301	CTTAACCCGCCCAGCTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	23	39	-	3.83636	6.72e-05	0.0301	CGCGCCACCCCCATCCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	61	77	+	3.83636	6.72e-05	0.0301	CCGGCCGCGCCCGCTCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	81	97	-	3.83636	6.72e-05	0.0301	CTTAACCCGCCCAGCTC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	81	97	-	3.83636	6.72e-05	0.0301	CTTAACCCGCCCAGCTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	81	97	-	3.83636	6.72e-05	0.0301	CTTAACCCGCCCAGCTC
XBP1	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	35	48	+	9.80769	6.72e-05	0.529	ATAGCAACGTCATA
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	34	47	-	9.80769	6.72e-05	0.529	ATAGCAACGTCATA
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	34	47	-	9.80769	6.72e-05	0.529	ATAGCAACGTCATA
XBP1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	48	61	-	9.80769	6.72e-05	0.529	CCGCCCACGTCATG
EGR1	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	5	18	+	10.2885	6.72e-05	0.0253	GCGCCACCGCCAGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	10	23	+	10.2885	6.72e-05	0.0253	GCGCTGCTCCCGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	38	51	+	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	28	41	-	10.2885	6.72e-05	0.0253	CGCCCGCCGCCTGT
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	32	45	-	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	38	51	-	10.2885	6.72e-05	0.0253	CTGCTGCCTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	40	53	-	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	62	75	+	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	51	64	-	10.2885	6.72e-05	0.0253	GTGCCTCCCTCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	70	83	+	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	79	92	+	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	79	92	+	10.2885	6.72e-05	0.0253	CCTCTTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	96	109	+	10.2885	6.72e-05	0.0253	CGGCAGCCCCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	97	110	-	10.2885	6.72e-05	0.0253	GCGCCACCGCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	97	110	-	10.2885	6.72e-05	0.0253	GCGCCACCGCCAGC
EHF	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	25	36	+	10.2623	6.73e-05	0.135	CAACAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	54	65	+	10.2623	6.73e-05	0.135	GCACCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	54	65	+	10.2623	6.73e-05	0.135	GCACCGGAAGTG
EHF	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	50	61	-	10.2623	6.73e-05	0.135	GCACCGGAAGTG
EHF	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	90	-	10.2623	6.73e-05	0.135	CAACAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	102	113	+	10.2623	6.73e-05	0.135	GCACCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	102	113	+	10.2623	6.73e-05	0.135	GCACCGGAAGTG
PPARG	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	23	42	+	7.08889	6.73e-05	1	CTGGGGCACGGACACCGACG
EGR4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	1	16	-	10.2727	6.73e-05	0.0398	CCCCTCCCCCGCCGAG
EGR4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	44	59	+	10.2727	6.73e-05	0.0398	CCCCTCCCCCGCCGAG
EGR4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	56	71	-	10.2727	6.73e-05	0.0398	CCCCTCCCCCGCCGAG
EGR4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	99	114	+	10.2727	6.73e-05	0.0398	CCCCTCCCCCGCCGAG
JUN	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	22	34	+	10.3878	6.73e-05	0.317	GAAGTGACGTCAG
JUN	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	56	68	+	10.3878	6.73e-05	0.317	GAAGTGACGTCAG
JUN	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	47	59	-	10.3878	6.73e-05	0.317	GAAGTGACGTCAG
JUN	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	81	93	-	10.3878	6.73e-05	0.317	GAAGTGACGTCAG
EGR3	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	17	31	-	6.39655	6.73e-05	0.0412	GGATGCCCACCCACC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	36	50	-	6.39655	6.73e-05	0.0412	CCCCGGCCCCGCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	36	50	-	6.39655	6.73e-05	0.0412	CCCCGGCCCCGCGGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	36	50	-	6.39655	6.73e-05	0.0412	CCCCGGCCCCGCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	36	50	-	6.39655	6.73e-05	0.0412	CCCCGGCCCCGCGGC
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	29	43	+	7.34211	6.73e-05	0.256	CCGGTGACGCGGCTG
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	72	86	-	7.34211	6.73e-05	0.256	CCGGTGACGCGGCTG
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	17	26	-	9.6	6.73e-05	0.254	ACCACGCGAC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	15	28	-	6.3617	6.73e-05	0.0995	CCCACCCCACCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	15	28	-	6.3617	6.73e-05	0.0995	CCCACCCCACCGCG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	42	55	+	6.3617	6.73e-05	0.0995	GCCTCCCTGCGGTC
ZIC1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	44	57	-	6.3617	6.73e-05	0.0995	GCCTCCCTGCGGTC
ZIC1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	58	71	+	6.3617	6.73e-05	0.0995	GCCTCCCTGCGGTC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	54	67	-	6.3617	6.73e-05	0.0995	CCGCCCCCGCCGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	60	73	-	6.3617	6.73e-05	0.0995	GCCTCCCTGCGGTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	18	29	+	10.8289	6.73e-05	0.0328	GCCTCCCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	28	39	+	10.8289	6.73e-05	0.0328	CCCCCGCCCTCT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	28	39	+	10.8289	6.73e-05	0.0328	CCCCCGCCCTCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	42	53	+	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	42	53	+	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	42	53	+	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	62	73	-	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	73	84	-	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	73	84	-	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	73	84	-	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	73	84	-	10.8289	6.73e-05	0.0328	GTCCCGCCCCCA
SP8	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	76	87	-	10.8289	6.73e-05	0.0328	CCCCCGCCCTCT
ZIC4	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	4	18	-	10.3636	6.73e-05	0.109	GACGGCCCACGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	22	36	-	10.3636	6.73e-05	0.109	CGCCCCCTCCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	96	110	-	10.3636	6.73e-05	0.109	CACCCCCAGCTGGTC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	96	110	-	10.3636	6.73e-05	0.109	CACCCCCAGCTGGTC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	79	93	+	10.3636	6.73e-05	0.109	CGCCCCCTCCCGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	97	111	+	10.3636	6.73e-05	0.109	GACGGCCCACGGGGC
SOX9	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	25	33	-	10.9146	6.73e-05	1	CCATTGTGC
SOX9	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	82	90	+	10.9146	6.73e-05	1	CCATTGTGC
SOX9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	87	95	-	10.9146	6.73e-05	1	CCATTGTGC
SOX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	87	95	-	10.9146	6.73e-05	1	CCATTGTGC
Rfx1	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	51	64	+	10.1207	6.73e-05	0.291	TCTCCCCGGGCAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	51	64	-	10.1207	6.73e-05	0.291	TCTCCCCGGGCAAC
RREB1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	17	36	-	3.73394	6.73e-05	0.0643	CCCCCACCCACATCCTGCTG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	17	36	-	3.73394	6.73e-05	0.0643	ACACACCCCTCCTACTACCA
RREB1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	79	98	+	3.73394	6.73e-05	0.0643	CCCCCACCCACATCCTGCTG
NFE2	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	-	5.69388	6.73e-05	0.342	ACTGACTCATT
NFE2	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	+	5.69388	6.73e-05	0.342	ACTGACTCATT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	13	27	+	9.38571	6.73e-05	0.122	TTAGGGCAAGGTGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	13	27	+	9.38571	6.73e-05	0.122	TTAGGGCAAGGTGCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	13	27	+	9.38571	6.73e-05	0.122	TTAGGGCAAGGTGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	27	38	-	11.2727	6.73e-05	0.0577	CGCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	27	38	-	11.2727	6.73e-05	0.0577	CGCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	27	38	-	11.2727	6.73e-05	0.0577	CGCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	27	38	-	11.2727	6.73e-05	0.0577	CGCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	27	38	-	11.2727	6.73e-05	0.0577	CGCCCTCGGGGC
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	73	82	-	11.1967	6.73e-05	0.718	TGTGCGGGCT
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	73	82	-	11.1967	6.73e-05	0.718	TGTGCGGGCT
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	23	37	+	10.6346	6.73e-05	0.182	ACGTTAGCCAATGGA
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	23	37	+	10.6346	6.73e-05	0.182	ACGTTAGCCAATGGA
HEY1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	-	11.5273	6.73e-05	0.167	TGCACGTGCG
HEY1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	+	11.5273	6.73e-05	0.167	TGCACGTGCG
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	85	100	-	3.10909	6.73e-05	0.49	TGGGGCGAAGCCCGAG
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	35	45	+	11.2653	6.73e-05	0.222	GAATGAGTCAA
JUNB	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	48	58	+	11.2653	6.73e-05	0.222	GAATGAGTCAA
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	57	67	-	11.2653	6.73e-05	0.222	GAATGAGTCAA
JUNB	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	70	80	-	11.2653	6.73e-05	0.222	GAATGAGTCAA
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.1.0	54	66	+	8.2931	6.74e-05	0.167	GCACCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	54	66	+	8.2931	6.74e-05	0.167	GCACCGGAAGTGA
ELF3	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	49	61	-	8.2931	6.74e-05	0.167	GCACCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	102	114	+	8.2931	6.74e-05	0.167	GCACCGGAAGTGA
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	102	114	+	8.2931	6.74e-05	0.167	GCACCGGAAGTGA
KLF16	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	14	24	-	10.5172	6.74e-05	0.0224	CCCGCTCCCCC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	8	21	-	8.19672	6.74e-05	0.185	AAACCCCCGCGACC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	8	21	-	8.19672	6.74e-05	0.185	AAACCCCCGCGACC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	10.9483	6.74e-05	0.199	GCCACGTGAC
HEY2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	10.9483	6.74e-05	0.199	GCCACGTGAC
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	40	54	-	10.2069	6.74e-05	0.504	GGGCCGAAGGCCAAT
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	1	11	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	1	11	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	11	21	+	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	37	47	+	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	28	38	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	34	44	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	34	44	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	34	44	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	45	55	+	10.0727	6.74e-05	0.0207	CCACGTGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	60	70	-	10.0727	6.74e-05	0.0207	CCACGTGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	77	87	+	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	68	78	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	94	104	-	10.0727	6.74e-05	0.0207	GCCCGGGCGCC
BHLHE40	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	11.6346	6.74e-05	0.28	GTCACGTGTC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	11.6346	6.74e-05	0.28	GTCACGTGTC
BHLHE40	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	11.6346	6.74e-05	0.28	GTCACGTGTC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	11.6346	6.74e-05	0.28	GTCACGTGTC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	11.6346	6.74e-05	0.28	GACACGTGAT
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	11.6346	6.74e-05	0.28	GTCACGTGTC
BHLHE40	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	11.6346	6.74e-05	0.28	GTCACGTGTC
Sox3	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	78	87	+	11.6379	6.74e-05	0.659	CCTTTCTTCT
Sox3	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	28	37	-	11.6379	6.74e-05	0.659	CCTTTCTTCT
Sox3	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	48	57	-	11.6379	6.74e-05	0.659	CTTTTGTGCT
Sox3	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	50	59	-	11.6379	6.74e-05	0.659	CCTTTCTTCT
Sox3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	66	75	-	11.6379	6.74e-05	0.659	CCTTTCTTCT
Zfx	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	44	57	+	10.803	6.74e-05	0.0614	AGGCTCCAGGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	58	71	-	10.803	6.74e-05	0.0614	AGGCTCCAGGCCTG
POU3F3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	7	19	-	10.86	6.74e-05	1	TTTATGGTGATTT
POU3F3	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	96	108	+	10.86	6.74e-05	1	TTTATGGTGATTT
TFAP4	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	11	20	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	16	25	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	22	31	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	27	36	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	52	61	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	52	61	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	69	78	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	79	88	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.0.0	82	91	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.1.0	82	91	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	84	93	+	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	90	99	-	10.8182	6.74e-05	0.655	CACAGCTGAA
TFAP4	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	95	104	-	10.8182	6.74e-05	0.655	CACAGCTGAA
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	3	12	+	10.6972	6.74e-05	0.0553	CCCCCCCTTC
ZNF740	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	36	45	+	10.6972	6.74e-05	0.0553	CCCCCCCTTC
ZNF740	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	70	79	-	10.6972	6.74e-05	0.0553	CCCCCCCTTC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	68	77	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	68	77	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	84	93	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	104	113	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	104	113	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	104	113	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	104	113	-	10.9571	6.74e-05	0.234	GGCTGCTGCT
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	33	42	+	10.9571	6.74e-05	0.234	GGCTGCTGCT
E2F6	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	70	80	+	11.1897	6.74e-05	0.0706	GCGAGGGAGCA
LHX6	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	11.5091	6.74e-05	1	AATAATTAGC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	29	40	-	8.8	6.74e-05	0.231	CATCACGTCACT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	40	52	-	10.0328	6.74e-05	0.0644	TCCCTCAGAGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	40	52	-	10.0328	6.74e-05	0.0644	TCCCTCAGAGGCT
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	-	10.0328	6.74e-05	0.0644	TGCCGCACAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	83	95	+	10.3279	6.74e-05	0.0589	TGCCGGGAAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	83	95	+	10.3279	6.74e-05	0.0589	TGCCGGGAAGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	83	95	+	10.3279	6.74e-05	0.0589	TGCCGGGAAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	83	95	+	10.3279	6.74e-05	0.0589	TGCCGGGAAGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	32	-	10.3279	6.74e-05	0.0589	TGCCGGGAAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	59	71	-	10.3279	6.74e-05	0.0589	CGCCGGGCGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	-	10.3279	6.74e-05	0.0589	CGCCGCTCGGGCT
CLOCK	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	11.303	6.74e-05	0.585	CACACGTGCA
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	11.303	6.74e-05	0.585	CACACGTGCA
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	11.303	6.74e-05	0.585	CACACGTGCA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	9	23	+	10.8468	6.75e-05	0.188	AGGGGACAGAGGGAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	11	25	-	10.8468	6.75e-05	0.188	CTGGGGCAGGGGCGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	11	25	-	10.8468	6.75e-05	0.188	CTGGGGCAGGGGCGG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	21	35	-	10.8468	6.75e-05	0.188	CTGGGGCGGAAGGCA
Hes2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	89	101	-	10.7302	6.75e-05	0.547	TGCCGACACGGGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	89	101	-	10.7302	6.75e-05	0.547	TGCCGACACGGGC
Hes2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	89	101	-	10.7302	6.75e-05	0.547	TGCCGACACGGGC
Hes2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	89	101	-	10.7302	6.75e-05	0.547	TGCCGACACGGGC
Stat6	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	14	28	+	10.931	6.75e-05	0.763	GTCTTTCTGAGAATC
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	20	34	-	10.931	6.75e-05	0.763	GATTTCCCCAGAACG
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	81	95	+	10.931	6.75e-05	0.763	GATTTCCCCAGAACG
Stat6	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	86	100	-	10.931	6.75e-05	0.763	GTCTTTCTGAGAATC
DUXA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	2	14	-	11.2258	6.75e-05	1	TGGACTCAATCAA
DUXA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	2	14	-	11.2258	6.75e-05	1	TGGACTCAATCAA
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	29	41	+	11.7755	6.75e-05	0.177	CCCAGCTGTGGGG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	29	41	+	11.7755	6.75e-05	0.177	CCCAGCTGTGGGG
Myod1	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	59	71	+	11.7755	6.75e-05	0.177	CTCAGCTGCCGGG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	88	100	+	11.7755	6.75e-05	0.177	CTCAGCTGCCGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	88	100	+	11.7755	6.75e-05	0.177	CTCAGCTGCCGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	32	44	-	11.7755	6.75e-05	0.177	GGCAGCTGGTGCT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	32	44	-	11.7755	6.75e-05	0.177	GGCAGCTGGTGCT
Myod1	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	44	56	-	11.7755	6.75e-05	0.177	CTCAGCTGCCGGG
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	76	88	-	11.7755	6.75e-05	0.177	CCCAGCTGTGGGG
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	76	88	-	11.7755	6.75e-05	0.177	CCCAGCTGTGGGG
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	95	107	-	11.7755	6.75e-05	0.177	CCCACCTGCTCGG
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	95	107	-	11.7755	6.75e-05	0.177	CCCACCTGCTCGG
RREB1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	18	37	-	3.72477	6.75e-05	0.0643	CCCCAGCCCACAACCTGGCA
RREB1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	78	97	+	3.72477	6.75e-05	0.0643	CCCCAGCCCACAACCTGGCA
Hoxa11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	11	22	-	11.4839	6.75e-05	1	TGTCGTAAACCA
Hoxa11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	93	104	+	11.4839	6.75e-05	1	TGTCGTAAACCA
YY1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	90	101	+	10.6154	6.75e-05	0.302	GAAGATGGAGGG
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	90	101	+	10.6154	6.75e-05	0.302	GAAGATGGAGGG
Hoxb5	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	49	64	+	11.1299	6.75e-05	1	TCCTTAATTACCATAA
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	29	40	+	11.1084	6.75e-05	1	AGATGCAAATGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	15	29	+	10.4138	6.75e-05	0.015	CTCCTTCCCCTCCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	15	29	+	10.4138	6.75e-05	0.015	CTCCTTCCCCTCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	22	36	-	10.4138	6.75e-05	0.015	CCTCCTCCCCTGCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	22	36	-	10.4138	6.75e-05	0.015	CCTCCTCCCCTGCTG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	33	47	-	10.4138	6.75e-05	0.015	ACTCCTCCTCTCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	41	55	-	10.4138	6.75e-05	0.015	CGCCCACCCCGCCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	41	55	-	10.4138	6.75e-05	0.015	CGCCCACCCCGCCCA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	55	69	-	10.4138	6.75e-05	0.015	GCCCCACCTCCAATA
SP3	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	12	22	+	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	22	32	+	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	80	90	+	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	25	35	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	25	35	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	25	35	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	25	35	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	27	37	-	11.0488	6.75e-05	0.0234	AACACACCCCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	27	37	-	11.0488	6.75e-05	0.0234	AACACACCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	27	37	-	11.0488	6.75e-05	0.0234	AACACACCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	83	93	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	83	93	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	83	93	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
SP3	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	93	103	-	11.0488	6.75e-05	0.0234	CCAACGCCCCA
NR1H2::RXRA	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	40	56	-	-5.32584	6.75e-05	1	CGGGGCCGAAGGCCAAT
FOXA1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	46	60	-	11.4082	6.75e-05	1	AGACTGTTGACTCTG
PPARG	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	52	71	-	7.07778	6.75e-05	1	CTGGGCCATTCGGCCCTTAT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	59	79	-	8.96774	6.75e-05	0.187	TCTCTCTTTCTGTCTCGCTCA
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	87	107	-	8.96774	6.75e-05	0.187	TCTCTCTTTCTGTCTCGCTCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	75	92	-	-14.3026	6.75e-05	0.0536	AAAAGAAGGCAAGCAAAA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	11.4483	6.75e-05	0.126	ACCGGAAAGA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	11.4483	6.75e-05	0.126	ACCGGAAAGA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	11.4483	6.75e-05	0.126	ACCGGAAAGA
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	11.4483	6.75e-05	0.126	ACCGGAAAGA
ETV4	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	11.4483	6.75e-05	0.126	ACCGGAAAGA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	11.4483	6.75e-05	0.126	ACCGGAAACC
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	11.4483	6.75e-05	0.126	ACCGGAAACC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	5	14	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	5	14	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	14	23	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	14	23	+	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	5	14	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	5	14	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	18	27	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	18	27	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	18	27	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	18	27	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	14	23	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	14	23	-	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	25	34	+	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	18	27	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	18	27	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	18	27	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	18	27	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	25	34	-	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	35	44	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	35	44	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	48	57	+	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	48	57	-	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	58	67	+	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	58	67	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	58	67	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	58	67	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	58	67	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	58	67	-	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	58	67	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	58	67	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	58	67	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	58	67	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	71	80	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	71	80	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	71	80	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	71	80	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	81	90	+	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	81	90	+	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	81	90	-	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	81	90	-	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	92	101	+	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	94	103	+	9.93548	6.75e-05	0.0499	TGCGCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	97	106	+	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	97	106	+	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	101	110	+	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	92	101	-	9.93548	6.75e-05	0.0499	GGCGCGCGGA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	94	103	-	9.93548	6.75e-05	0.0499	GCCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	97	106	-	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	97	106	-	9.93548	6.75e-05	0.0499	TCCGCGCGCC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	101	110	-	9.93548	6.75e-05	0.0499	TGCGCGCGGC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	29	42	+	11.2115	6.75e-05	0.223	GGGGCCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	29	42	+	11.2115	6.75e-05	0.223	GGGGCCTGAGTCAC
JUN(var.2)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	85	98	+	11.2115	6.75e-05	0.223	GGGGCCTGAGTCAC
JUN(var.2)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	17	30	-	11.2115	6.75e-05	0.223	GGGGCCTGAGTCAC
JUN(var.2)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	73	86	-	11.2115	6.75e-05	0.223	GGGGCCTGAGTCAC
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	93	104	-	4.82927	6.76e-05	0.631	CTTCCCGCGGAC
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	93	104	-	4.82927	6.76e-05	0.631	CTTCCCGCGGAC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	25	35	-	10.5818	6.76e-05	0.372	CTTCTTGGAAC
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	25	35	-	10.5818	6.76e-05	0.372	CTTCTTGGAAC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	25	35	-	10.5818	6.76e-05	0.372	CTTCTTGGAAC
STAT1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	25	35	-	10.5818	6.76e-05	0.372	CTTCTTGGAAC
STAT1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	25	35	-	10.5818	6.76e-05	0.372	CTTCTTGGAAC
SP4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	15	31	+	3.81818	6.76e-05	0.0301	TCGGCCCAGCCCACAGG
SP4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	17	33	+	3.81818	6.76e-05	0.0301	TCGGCCCAGCCCACAGG
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	7	23	-	3.81818	6.76e-05	0.0301	CCTGCCCCGCCCTGTCC
SP4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	24	40	+	3.81818	6.76e-05	0.0301	GCGGCCACACCCAAACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	22	38	-	3.81818	6.76e-05	0.0301	CGAGCTCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	22	38	-	3.81818	6.76e-05	0.0301	CGAGCTCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	22	38	-	3.81818	6.76e-05	0.0301	CGAGCTCCGCCCCGCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	22	38	-	3.81818	6.76e-05	0.0301	CGAGCTCCGCCCCGCCG
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	54	70	-	3.81818	6.76e-05	0.0301	CGGGCCCCGCCCTGCTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	54	70	-	3.81818	6.76e-05	0.0301	CGGGCCCCGCCCTGCTG
SP4	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	76	92	+	3.81818	6.76e-05	0.0301	ATGTCCCCGCCCGCTGT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	75	91	-	3.81818	6.76e-05	0.0301	GCGGCCACACCCAAACC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	75	91	-	3.81818	6.76e-05	0.0301	GCGGCCACACCCAAACC
SP4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	82	98	-	3.81818	6.76e-05	0.0301	TCGGCCCAGCCCACAGG
SP4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	84	100	-	3.81818	6.76e-05	0.0301	TCGGCCCAGCCCACAGG
ONECUT3	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	26	39	+	9.48315	6.76e-05	1	GAGAAACCAATACT
ONECUT3	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	82	95	-	9.48315	6.76e-05	1	GAGAAACCAATACT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	27	-	9.89655	6.76e-05	0.0554	GCCCCCCGCGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	34	46	+	9.89655	6.76e-05	0.0554	GCCCGCGGGGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	+	9.89655	6.76e-05	0.0554	CGCCTCCTGGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	39	51	-	9.89655	6.76e-05	0.0554	GCCCGCGGGGGCG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	69	81	-	9.89655	6.76e-05	0.0554	GCCCGCGGGGGCG
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	11	25	-	9.77273	6.76e-05	0.326	CGGAGTGAGCCAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	11	25	-	9.77273	6.76e-05	0.326	CGGAGTGAGCCAGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	21	31	+	11.3091	6.76e-05	0.0551	TGCCGGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	21	31	+	11.3091	6.76e-05	0.0551	TGCCGGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	21	31	+	11.3091	6.76e-05	0.0551	TGCCGGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	21	31	+	11.3091	6.76e-05	0.0551	TGCCGGCGGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	77	86	+	10.8621	6.76e-05	0.138	AGCATCTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	104	113	+	10.8621	6.76e-05	0.138	AACACCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	104	113	+	10.8621	6.76e-05	0.138	AACACCTGCG
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	86	97	-	9.24194	6.76e-05	1	GGAGAGCAAAGA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	6	19	-	5.39796	6.76e-05	0.365	TGGCCCGACGCCTG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	6	19	-	5.39796	6.76e-05	0.365	TGGCCCGACGCCTG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	7	20	-	5.39796	6.76e-05	0.365	AGGCTCCGGGCCAG
NFIC::TLX1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	57	70	+	5.39796	6.76e-05	0.365	AGGCTCCGGGCCAG
NFIC::TLX1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	95	108	+	5.39796	6.76e-05	0.365	AGGCTCCGGGCCAG
Gfi1b	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	46	56	+	11.2069	6.76e-05	0.553	CAATCACAGGT
Gfi1b	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	59	69	-	11.2069	6.76e-05	0.553	CAATCACAGGT
Gfi1b	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	59	69	-	11.2069	6.76e-05	0.553	CAATCACAGGT
Gfi1b	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	59	69	-	11.2069	6.76e-05	0.553	CAATCACAGGT
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.0.0	51	65	+	10.3818	6.76e-05	0.322	GGAAGGTGAATGTAG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	51	65	+	10.3818	6.76e-05	0.322	GGAAGGTGAATGTAG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	51	65	+	10.3818	6.76e-05	0.322	GGAAGGTGAATGTAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	41	54	+	8.7931	6.76e-05	0.0358	GGTCCCGCCCTCGT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	41	54	+	8.7931	6.76e-05	0.0358	GGTCCCGCCCTCGT
KLF14	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	90	103	-	8.7931	6.76e-05	0.0358	GGCTGCGCCTCCCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	23	40	-	-14.3158	6.76e-05	0.0536	GAAAGGGGGGGGGAAAAG
ELK3	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	36	45	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	44	53	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	54	63	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	54	63	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	54	63	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	54	63	+	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	27	36	-	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	62	71	-	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	62	71	-	11.1552	6.76e-05	0.121	ACCGGAACCG
ELK3	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	70	79	-	11.1552	6.76e-05	0.121	ACCGGAACCG
MTF1	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	29	42	-	6.31707	6.76e-05	0.5	TTTGATGACGTCAC
MTF1	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	73	86	+	6.31707	6.76e-05	0.5	TTTGATGACGTCAC
SP1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	2	12	-	10.9423	6.76e-05	0.0171	GCCCTTCCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	15	25	+	10.9423	6.76e-05	0.0171	TCTCCACCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	15	25	+	10.9423	6.76e-05	0.0171	TCTCCACCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	15	25	+	10.9423	6.76e-05	0.0171	TCTCCACCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	31	41	+	10.9423	6.76e-05	0.0171	GCCCTTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	31	41	+	10.9423	6.76e-05	0.0171	GCCCTTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	42	52	+	10.9423	6.76e-05	0.0171	GGCCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	42	52	+	10.9423	6.76e-05	0.0171	GGCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	42	52	+	10.9423	6.76e-05	0.0171	GGCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	42	52	+	10.9423	6.76e-05	0.0171	GGCCCACCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	54	64	-	10.9423	6.76e-05	0.0171	CTTCCGCCCAC
SP1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	63	73	-	10.9423	6.76e-05	0.0171	GGCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	74	84	-	10.9423	6.76e-05	0.0171	CTTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	74	84	-	10.9423	6.76e-05	0.0171	CTTCCGCCCAC
SP1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	74	84	-	10.9423	6.76e-05	0.0171	GCCCTTCCCCC
SP1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	103	113	+	10.9423	6.76e-05	0.0171	GCCCTTCCCCC
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	22	38	-	5.58182	6.76e-05	0.619	TGTTCCGCCTGACAGCC
PAX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	22	38	-	5.58182	6.76e-05	0.619	TGTTCCGCCTGACAGCC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	11	20	-	8.15385	6.76e-05	0.2	GTCACGGGCC
DBP	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	18	29	+	11.3208	6.76e-05	1	CATGACGTAAGC
DBP	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	41	52	+	11.3208	6.76e-05	1	CATGACGTAAGC
DBP	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	74	-	11.3208	6.76e-05	1	CATGACGTAAGC
DBP	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	97	-	11.3208	6.76e-05	1	CATGACGTAAGC
GLIS3	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	7	20	+	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
GLIS3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	95	108	-	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	95	108	-	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
GLIS3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	95	108	-	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
GLIS3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	95	108	-	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
GLIS3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	95	108	-	3.78788	6.77e-05	0.379	TACCCTCCGCGGAC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	64	78	+	6.37931	6.77e-05	0.0412	CTCAGCCCCCGCCTC
EGR3	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	65	79	+	6.37931	6.77e-05	0.0412	TCTCGCCTCCGCTCC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	2	13	-	11.2889	6.77e-05	1	CAATGCAACAGC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	2	13	-	11.2889	6.77e-05	1	CAATGCAACAGC
Ddit3::Cebpa	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	64	75	-	11.2889	6.77e-05	1	CAATGCAACAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	85	104	+	3.7156	6.77e-05	0.0643	ACGCCAACCAGCAGCCTCGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	85	104	+	3.7156	6.77e-05	0.0643	ACGCCAACCAGCAGCCTCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	5	19	+	8.11429	6.77e-05	0.116	CCCCACCCACTACGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	96	110	-	8.11429	6.77e-05	0.116	CCCCACCCACTACGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	96	110	-	8.11429	6.77e-05	0.116	CCCCACCCACTACGC
Rarb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.1.0	96	111	+	-4.2069	6.77e-05	1	AAGGGTCGTGAGGGCT
Rarb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329796..58329910,-__242.1.0.0	96	111	+	-4.2069	6.77e-05	1	AAGGGTCGTGAGGGCT
ZBTB7B	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	73	84	-	10.5862	6.77e-05	0.365	CCGCCCACCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	31	42	+	10.5862	6.77e-05	0.365	CCGCCCACCGCG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	31	42	+	10.5862	6.77e-05	0.365	CCGCCCACCGCG
ETV6	FLIPPED__Lincrna.flip.antisense__chr20:37063936..37064050,+__2383.1.0.0	74	83	+	11.2885	6.77e-05	0.111	GGCGGAAATA
ETV6	WILDTYPE__Lincrna.flip.sense__chr20:37063936..37064050,-__473.1.0.0	32	41	-	11.2885	6.77e-05	0.111	GGCGGAAATA
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	34	47	+	0.909091	6.77e-05	0.221	AGGTGACATCTTCT
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	34	47	+	0.909091	6.77e-05	0.221	AGGTGACATCTTCT
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	23	43	-	9.63265	6.77e-05	0.0199	AGAGAAGGGGCCCAAGGAGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	27	47	-	9.63265	6.77e-05	0.0199	TGGGGCCGGGGCGGAGAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	56	76	-	9.63265	6.77e-05	0.0199	GGAGGGCAGGGCAGAGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	24	44	+	9.63265	6.77e-05	0.0199	TGAGGGCGGGGTGGGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	41	61	+	9.63265	6.77e-05	0.0199	GGAGGGCAGGGCAGAGGAGGA
ZNF263	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	68	88	+	9.63265	6.77e-05	0.0199	TGGGGCCGGGGCGGAGAGAGG
MAFK	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	12	26	+	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	22	36	+	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	22	36	+	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
MAFK	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	79	93	-	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	89	103	-	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
MAFK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	89	103	-	11.1111	6.77e-05	1	TAGTATCAGCAGTAA
INSM1	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	67	78	-	9.87755	6.77e-05	0.184	AGGCTGGGGCCG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	6	15	-	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	6	15	-	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	21	30	-	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	33	42	+	10.7959	6.77e-05	0.024	GGGGTGGTGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	53	62	+	10.7959	6.77e-05	0.024	GGGGTGGTGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	53	62	+	10.7959	6.77e-05	0.024	GGGGTGGTGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	82	-	10.7959	6.77e-05	0.024	GGGGTGGTGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	85	94	+	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	85	94	+	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	85	94	+	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	85	94	+	10.7959	6.77e-05	0.024	TGGGCGGGTT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	85	94	+	10.7959	6.77e-05	0.024	TGGGCGGGTT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	11.4878	6.77e-05	0.181	GTCACGCGAC
TFEC	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	11.4878	6.77e-05	0.181	GTCACGCGAC
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	1	12	+	11.1774	6.77e-05	0.281	ACGCCCACCTCC
ZBTB7C	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	19	30	+	11.1774	6.77e-05	0.281	GCCCCCCCCGAC
ZBTB7C	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	85	96	-	11.1774	6.77e-05	0.281	GCCCCCCCCGAC
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	103	114	-	11.1774	6.77e-05	0.281	ACGCCCACCTCC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	7	16	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	7	16	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	7	16	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	7	16	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	7	16	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	39	48	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	39	48	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	39	48	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	51	60	+	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	67	76	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	67	76	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	67	76	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.1702	6.77e-05	0.12	AGCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.1702	6.77e-05	0.12	GCCGGAAGCT
FLI1	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	99	108	-	11.1702	6.77e-05	0.12	ACCGGAAAAG
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	11.1702	6.77e-05	0.12	AGCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.1702	6.77e-05	0.12	AGCGGAAGCG
FEV	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	11.4231	6.77e-05	0.141	ACCGGAAAGG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	90	101	+	11.1837	6.77e-05	0.0866	CGGCTCGAGGCA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	70	81	-	10.2459	6.77e-05	0.135	TCGCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	70	81	-	10.2459	6.77e-05	0.135	TCGCCGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	70	81	-	10.2459	6.77e-05	0.135	TCGCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	70	81	-	10.2459	6.77e-05	0.135	TCGCCGGAAGTC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	31	49	+	10.5323	6.77e-05	0.15	CTGGGCGCCCGGGCTGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	31	49	+	10.5323	6.77e-05	0.15	CTGGGCGCCCGGGCTGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	31	49	+	10.5323	6.77e-05	0.15	CTGGGCGCCCGGGCTGGGC
TCF7L2	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	46	59	+	11.0909	6.77e-05	1	AGAGTTAAAAGGGG
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	39	48	-	9.88776	6.77e-05	0.233	CGGATTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	39	48	-	9.88776	6.77e-05	0.233	CGGATTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	39	48	-	9.88776	6.77e-05	0.233	CGGATTTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	39	48	-	9.88776	6.77e-05	0.233	CGGATTTCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	89	98	+	9.88776	6.77e-05	0.233	CGGATTTCCC
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	21	37	+	9.78571	6.77e-05	0.368	GGTTGACGGTGGATTCA
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	36	46	-	11.5306	6.77e-05	0.79	ATTGCCCCACC
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	36	46	-	11.5306	6.77e-05	0.79	ATTGCCCCACC
TBX21	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	19	28	+	10.8	6.77e-05	1	GATGTGTGAT
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	20	30	+	10.0545	6.77e-05	0.0207	GCGCTGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	20	30	+	10.0545	6.77e-05	0.0207	GCGCTGGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	44	54	+	10.0545	6.77e-05	0.0207	GCGCTGGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	48	58	+	10.0545	6.77e-05	0.0207	ACGTGTGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	57	67	-	10.0545	6.77e-05	0.0207	ACGTGTGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	64	74	-	10.0545	6.77e-05	0.0207	GCGCTGGCCCG
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	3	18	+	4.03279	6.78e-05	0.833	AGGTGCTCCCAGGTCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	6	21	+	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	6	21	+	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	6	21	+	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	6	21	+	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	2	17	-	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	2	17	-	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	2	17	-	4.03279	6.78e-05	0.833	GGGGTTAACCAGGGCA
Vdr	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	72	87	+	4.03279	6.78e-05	0.833	AAGTTCACGCAGTGGA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	23	32	+	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.1.0	32	41	+	11.1837	6.78e-05	0.0243	TCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	32	41	+	11.1837	6.78e-05	0.0243	TCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	27	36	-	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	27	36	-	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	27	36	-	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	44	53	-	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	61	70	+	11.1837	6.78e-05	0.0243	TCTCCGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	62	71	+	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	83	92	-	11.1837	6.78e-05	0.0243	TTCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	96	105	+	11.1837	6.78e-05	0.0243	TTCCCTCCCC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	+	11.2308	6.78e-05	0.167	ATCATGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	-	11.2308	6.78e-05	0.167	ATCATGTGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	-	11.2308	6.78e-05	0.167	ATCATGTGAT
TFEB	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.2308	6.78e-05	0.167	GGCACGTGGC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.2308	6.78e-05	0.167	GGCACGTGGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	8	21	-	8.18033	6.78e-05	0.185	GACCCCCCCCCCAG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	8	21	-	8.18033	6.78e-05	0.185	GACCCCCCCCCCAG
GLIS2	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	30	43	-	8.18033	6.78e-05	0.185	CACCCCCCATACGG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	55	68	+	8.18033	6.78e-05	0.185	GCCCCCCCCCCGTG
GLIS2	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	72	85	+	8.18033	6.78e-05	0.185	CACCCCCCATACGG
NKX3-2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	59	67	-	11.6538	6.78e-05	1	AACACTTAA
NKX3-2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	59	67	-	11.6538	6.78e-05	1	AACACTTAA
ELF3	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	7	19	-	8.27586	6.78e-05	0.167	TGCCAGGAAGTGG
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	81	93	+	8.27586	6.78e-05	0.167	ACACCGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	81	93	+	8.27586	6.78e-05	0.167	ACACCGGAAGTGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	81	93	+	8.27586	6.78e-05	0.167	ACACCGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	81	93	+	8.27586	6.78e-05	0.167	ACACCGGAAGTGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	17	27	+	10.931	6.78e-05	0.0506	GAGCGCGAAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	17	27	+	10.931	6.78e-05	0.0506	GAGCGCGAAAG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	29	39	+	10.931	6.78e-05	0.0506	GCGCGCGAGCA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	29	39	+	10.931	6.78e-05	0.0506	GCGCGCGAGCA
E2F4	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	39	49	-	10.931	6.78e-05	0.0506	AAGCGGGAGGA
E2F4	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	66	76	+	10.931	6.78e-05	0.0506	AAGCGGGAGGA
HES7	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	69	80	-	3.34483	6.78e-05	0.199	CGGCACGGGGCA
HES7	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	35	46	+	3.34483	6.78e-05	0.199	CGGCACGGGGCA
ZEB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	32	40	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	32	40	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	39	47	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	70	78	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	97	105	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	97	105	+	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	37	45	-	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	40	48	-	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	68	76	-	11.5455	6.78e-05	0.433	TCCCACCTG
ZEB1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	75	83	-	11.5455	6.78e-05	0.433	TCCCACCTG
ERG	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	36	45	+	11.4	6.78e-05	0.133	GCCGGAAACC
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	18	31	+	2.87273	6.78e-05	0.226	CGAACCCGGAAGTG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	18	31	+	2.87273	6.78e-05	0.226	CGAACCCGGAAGTG
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	18	31	+	2.87273	6.78e-05	0.226	CGAACCCGGAAGTG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	18	31	+	2.87273	6.78e-05	0.226	CGAACCCGGAAGTG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	10	20	-	11.1538	6.78e-05	0.0758	CGCCCAGGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	37	47	-	11.1538	6.78e-05	0.0758	CGCCCAGGGCT
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	95	105	+	11.1538	6.78e-05	0.0758	CGCCCAGGGCT
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	66	80	+	10.75	6.78e-05	0.341	AGAGGGCAAAGGGTC
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	66	80	+	10.75	6.78e-05	0.341	AGAGGGCAAAGGGTC
XBP1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	32	-	9.78846	6.78e-05	0.529	GGGGACACGTGACC
XBP1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	52	-	9.78846	6.78e-05	0.529	GGGGACACGTGACC
XBP1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	63	76	+	9.78846	6.78e-05	0.529	GGGGACACGTGACC
XBP1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	83	96	+	9.78846	6.78e-05	0.529	GGGGACACGTGACC
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	40	53	+	6.34211	6.78e-05	0.56	GTGCCAGCTGCTTA
JUND	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	30	40	+	10.5532	6.78e-05	0.23	GCTGAGTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	30	40	+	10.5532	6.78e-05	0.23	GCTGAGTCACA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	30	40	+	10.5532	6.78e-05	0.23	GCTGAGTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	30	40	+	10.5532	6.78e-05	0.23	GCTGAGTCACA
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	11	22	-	10.697	6.78e-05	0.109	CGGCGTCCCCCA
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	11	22	-	10.697	6.78e-05	0.109	CGGCGTCCCCCA
HINFP	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	56	67	+	10.697	6.78e-05	0.109	CGGCGTCCCCCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	31	41	+	11.0727	6.78e-05	0.0702	CGCCCTCGGCA
HIC2	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	47	55	+	11.0909	6.78e-05	0.358	GTGCCCAAC
HIC2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	84	92	-	11.0909	6.78e-05	0.358	GTGCCCAAC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	13	26	+	10.2692	6.78e-05	0.0254	CGACAGCCCCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	25	38	+	10.2692	6.78e-05	0.0254	GTTCCGCCTTCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	25	38	+	10.2692	6.78e-05	0.0254	GTTCCGCCTTCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	26	39	+	10.2692	6.78e-05	0.0254	CCTCTGCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	18	31	-	10.2692	6.78e-05	0.0254	CCTCAGCTCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	18	31	-	10.2692	6.78e-05	0.0254	CCTCAGCTCCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	23	36	-	10.2692	6.78e-05	0.0254	GGCCCGCTCCCTGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	23	36	-	10.2692	6.78e-05	0.0254	GGCCCGCTCCCTGC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	82	95	+	10.2692	6.78e-05	0.0254	CGACAGCCCCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	98	111	-	10.2692	6.78e-05	0.0254	CCCCCTCTCCTGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	98	111	-	10.2692	6.78e-05	0.0254	CCCCCTCTCCTGCC
TP53	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	95	112	+	6.53061	6.78e-05	0.979	CGCGCGCGCGGGCATGTG
ZBTB33	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	49	63	-	10.2879	6.78e-05	0.114	CCCCCGCGAGTCCGT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	84	98	-	10.2879	6.78e-05	0.114	CCCCCGCGAGTCCGT
ZBTB33	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	17	31	+	10.2879	6.78e-05	0.114	CCCCCGCGAGTCCGT
ZBTB33	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	52	66	+	10.2879	6.78e-05	0.114	CCCCCGCGAGTCCGT
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	93	107	+	10.2879	6.78e-05	0.114	GTCTCGCGCCCACGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	93	107	+	10.2879	6.78e-05	0.114	GTCTCGCGCCCACGC
SP8	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	15	26	+	10.8158	6.78e-05	0.0328	ACACCCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	6	17	-	10.8158	6.78e-05	0.0328	GAAACTCCCACA
SP8	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	31	+	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
SP8	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	31	42	-	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	60	+	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	40	51	-	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	41	52	-	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	41	52	-	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
SP8	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	75	+	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	84	+	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
SP8	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	84	+	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	68	79	-	10.8158	6.78e-05	0.0328	GACCCGCCTCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	68	79	-	10.8158	6.78e-05	0.0328	GACCCGCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	77	88	-	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	77	88	-	10.8158	6.78e-05	0.0328	GCCCCGCCTCTC
SP8	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	84	95	-	10.8158	6.78e-05	0.0328	GCCCCTCCTCCC
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.0.0	22	32	+	11.0612	6.79e-05	0.306	CTGTTGGGAAA
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	22	32	+	11.0612	6.79e-05	0.306	CTGTTGGGAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	29	39	-	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	29	39	-	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	29	39	-	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	29	39	-	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	43	53	-	11.0612	6.79e-05	0.306	CTGTTGGGAAA
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	86	96	+	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	86	96	+	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	86	96	+	11.0612	6.79e-05	0.306	TATCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	86	96	+	11.0612	6.79e-05	0.306	TATCTGGGAAG
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	24	35	+	10.8226	6.79e-05	1	AGATGCAAATTC
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	24	35	+	10.8226	6.79e-05	1	AGATGCAAATTC
POU3F2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	27	38	-	10.8226	6.79e-05	1	AGATGCAAATTC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	55	74	-	3.70642	6.79e-05	0.0643	CACCAACTGAAAACCTGCCA
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	+	11.6	6.79e-05	0.821	GTTGTGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	+	11.6	6.79e-05	0.821	GTTGTGCAAT
CEBPB	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	+	11.6	6.79e-05	0.821	GTTGTGCAAT
CEBPB	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	-	11.6	6.79e-05	0.821	GTTGTGCAAT
CEBPB	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	-	11.6	6.79e-05	0.821	GTTGTGCAAT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	69	86	+	-14.3553	6.79e-05	0.0538	GGAAGAGGAGCAGAAGGG
Creb5	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	86	97	+	8.76364	6.79e-05	0.231	TCTGACATCATT
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	18	29	-	8.76364	6.79e-05	0.231	TCTGACATCATT
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	18	29	-	8.76364	6.79e-05	0.231	TCTGACATCATT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	27	43	+	3.8	6.79e-05	0.0301	CGGGCTCCCCCCACTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	27	43	+	3.8	6.79e-05	0.0301	CGGGCTCCCCCCACTCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	27	43	+	3.8	6.79e-05	0.0301	CGGGCTCCCCCCACTCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	27	43	+	3.8	6.79e-05	0.0301	CGGGCTCCCCCCACTCA
SP4	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	50	66	+	3.8	6.79e-05	0.0301	CCCACCCCACCCCCCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	40	56	-	3.8	6.79e-05	0.0301	CTGTCCCCGCCCGCCGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	40	56	-	3.8	6.79e-05	0.0301	CTGTCCCCGCCCGCCGT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	40	56	-	3.8	6.79e-05	0.0301	CTGTCCCCGCCCGCCGT
CREB3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	-	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	-	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	-	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	-	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	+	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	+	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
CREB3	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	+	9.71429	6.79e-05	0.271	TTGTGACGTCACGG
IRF7	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	1	14	-	8.66129	6.79e-05	0.731	ACCAAACTGAATGA
ATF7	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	20	33	-	7.5	6.79e-05	0.204	GGGTGATGTCACTG
ATF7	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	64	77	-	7.5	6.79e-05	0.204	GGGTGATGTCACTG
ATF7	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	38	51	+	7.5	6.79e-05	0.204	GGGTGATGTCACTG
ATF7	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	82	95	+	7.5	6.79e-05	0.204	GGGTGATGTCACTG
SNAI2	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	38	46	+	11.5349	6.79e-05	0.498	TACAGGTGG
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	43	51	-	11.5349	6.79e-05	0.498	TACAGGTGG
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	43	51	-	11.5349	6.79e-05	0.498	TACAGGTGG
SNAI2	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	105	113	-	11.5349	6.79e-05	0.498	TACAGGTGG
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.5.0	38	50	+	6.7541	6.79e-05	0.943	TATCCACAGGTTT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	94	112	-	8.68852	6.79e-05	0.124	CGGGCAGCCGAGGGCTCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	94	112	-	8.68852	6.79e-05	0.124	CGGGCAGCCGAGGGCTCCG
Stat4	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	72	85	+	11.2931	6.79e-05	0.324	GTGCCGAGAAGAGA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	77	90	-	11.2931	6.79e-05	0.324	CTTCCTGGAATGGA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	77	90	-	11.2931	6.79e-05	0.324	CTTCCTGGAATGGA
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	97	110	-	11.2931	6.79e-05	0.324	CTTCCTGGAATGGA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	97	110	-	11.2931	6.79e-05	0.324	CTTCCTGGAATGGA
EGR4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	2	17	+	10.2545	6.79e-05	0.0398	ACCCGCCCCTGCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	28	43	+	10.2545	6.79e-05	0.0398	CCCCGCCCTCACACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	28	43	+	10.2545	6.79e-05	0.0398	CCCCGCCCTCACACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	21	36	-	10.2545	6.79e-05	0.0398	CCCCGCCCCCGGCTGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	21	36	-	10.2545	6.79e-05	0.0398	CCCCGCCCCCGGCTGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	21	36	-	10.2545	6.79e-05	0.0398	CCCCGCCCCCGGCTGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	21	36	-	10.2545	6.79e-05	0.0398	CCCCGCCCCCGGCTGG
EGR4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	98	113	-	10.2545	6.79e-05	0.0398	ACCCGCCCCTGCCCCC
DBP	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	+	11.3019	6.8e-05	1	GCTGACGTAACC
DBP	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	-	11.3019	6.8e-05	1	GCTGACGTAACC
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	46	57	-	11.3019	6.8e-05	1	CCTTATATAACC
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	46	57	-	11.3019	6.8e-05	1	CCTTATATAACC
DBP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	46	57	-	11.3019	6.8e-05	1	CCTTATATAACC
DBP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	46	57	-	11.3019	6.8e-05	1	CCTTATATAACC
DBP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	46	57	-	11.3019	6.8e-05	1	CCTTATATAACC
DBP	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	58	69	+	11.3019	6.8e-05	1	CCTTATATAACC
DBP	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	+	11.3019	6.8e-05	1	GCTGACGTAACC
DBP	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	-	11.3019	6.8e-05	1	GCTGACGTAACC
E2F6	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	37	47	-	11.1552	6.8e-05	0.0706	AAGAGGGAAAA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	69	79	-	11.1552	6.8e-05	0.0706	AAGAGGGAAAA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	69	79	-	11.1552	6.8e-05	0.0706	AAGAGGGAAAA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	-	10.3115	6.8e-05	0.0589	AGCCTGCAGGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	29	+	9.87931	6.8e-05	0.0554	GGCCTGCGGGGGG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	62	74	-	9.87931	6.8e-05	0.0554	GGCCTGCGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	-	9.87931	6.8e-05	0.0554	GCCCTGCAGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	-	9.87931	6.8e-05	0.0554	GCCCTGCAGGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	+	9.87931	6.8e-05	0.0554	TGCCTTTTGGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	-	9.87931	6.8e-05	0.0554	TCCCCAAAAGGCA
ZIC4	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	41	55	-	10.3455	6.8e-05	0.109	GGCGGCCCGCGGGGG
ZIC4	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	77	91	-	10.3455	6.8e-05	0.109	GCCCTCCTGCAGCCA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	100	114	-	10.3455	6.8e-05	0.109	TCCCGCCCACCGGGA
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	100	114	-	10.3455	6.8e-05	0.109	TCCCGCCCACCGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	100	114	-	10.3455	6.8e-05	0.109	TCCCGCCCACCGGGA
ZIC4	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	24	38	+	10.3455	6.8e-05	0.109	GCCCTCCTGCAGCCA
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	31	45	+	10.3455	6.8e-05	0.109	TCCCGCCCACCGGGA
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	43	57	+	10.3455	6.8e-05	0.109	TGCCTCCCGCTTTGC
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	40	50	+	10.2727	6.8e-05	0.269	TCCAGGATGTT
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	40	50	+	10.2727	6.8e-05	0.269	TCCAGGATGTT
Neurog1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	-	10.2967	6.8e-05	1	ACCATATGTA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	24	36	+	10.0164	6.8e-05	0.0644	GGCCGCCGGGGCT
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	86	98	-	10.0164	6.8e-05	0.0644	CGCCGCTAGGGGA
JUNB	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	29	39	+	11.2245	6.8e-05	0.222	ACATGACTCAC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	95	105	+	11.2245	6.8e-05	0.222	TGCTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	11	21	-	11.2245	6.8e-05	0.222	TGCTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	11	21	-	11.2245	6.8e-05	0.222	TGCTGAGTCAG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	9	26	+	-14.3684	6.8e-05	0.0538	AGTAGGAGGGAAGGCCAG
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	11.5758	6.8e-05	0.292	GTCACGTGCG
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	11.5758	6.8e-05	0.292	GTCACGTGCG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	85	97	+	11.2857	6.8e-05	0.486	TGGAGGTCAGAAG
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	92	101	+	11.2903	6.8e-05	0.799	AACATTCCTA
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	7	16	-	11.2903	6.8e-05	0.799	AACATTCCTA
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	39	48	-	11.2903	6.8e-05	0.799	AGCATTCCAG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	32	43	+	9.01818	6.8e-05	0.12	AAACAGGAAGCA
ELF1	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	46	57	+	9.01818	6.8e-05	0.12	CTGCCGGAAGCG
ELF1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	52	63	+	9.01818	6.8e-05	0.12	GTAGCGGAAGTC
ELF1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	63	-	9.01818	6.8e-05	0.12	GTAGCGGAAGTC
ELF1	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	69	-	9.01818	6.8e-05	0.12	CTGCCGGAAGCG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	96	-	9.01818	6.8e-05	0.12	AAACAGGAAGCA
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	21	35	+	10.3966	6.8e-05	0.015	CCCCCACCCCGCTGT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	21	35	+	10.3966	6.8e-05	0.015	CCCCCACCCCGCTGT
SP2	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	29	43	+	10.3966	6.8e-05	0.015	AGCCCTCCCCCTTTT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	36	50	-	10.3966	6.8e-05	0.015	CCCCCACCCCGCTGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	36	50	-	10.3966	6.8e-05	0.015	CCCCCACCCCGCTGT
SP2	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	48	62	-	10.3966	6.8e-05	0.015	TCCCCGCCCTACTAG
SP2	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	81	95	+	10.3966	6.8e-05	0.015	CTCCCTCCCACACAC
Pax2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	3	10	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	12	19	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	12	19	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	12	19	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	12	19	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	19	26	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Lincrna.noflip.NA__chr17:7819572..7819686,-__373.1.0.0	13	20	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	21	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	21	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	14	21	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	23	30	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	26	33	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	21	28	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	36	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	36	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	36	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	36	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	38	45	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	38	45	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	38	45	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	40	47	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	41	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	41	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	42	49	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	43	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	47	54	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	47	54	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	47	54	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	57	64	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	51	58	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	51	58	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	59	66	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	67	74	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	72	79	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	73	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	67	74	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	68	75	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	68	75	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	70	77	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	85	92	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	85	92	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	85	92	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	85	92	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	87	94	+	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	85	92	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	94	101	+	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	96	103	-	10.1889	6.8e-05	0.645	CGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	102	109	-	10.1889	6.8e-05	0.645	CGTCACGG
Pax2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	105	112	-	10.1889	6.8e-05	0.645	CGTCACGG
Rarb(var.2)	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	28	44	+	-2.42424	6.8e-05	0.861	AGGTGATGCTGGGGTGA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	21	35	-	6.36207	6.8e-05	0.0412	CCACGCTCAGGCATC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	42	56	+	6.36207	6.8e-05	0.0412	CCACGCTCAGGCATC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	68	82	+	6.36207	6.8e-05	0.0412	CGCCGCCGACTCACC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	68	82	+	6.36207	6.8e-05	0.0412	CGCCGCCGACTCACC
EGR3	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	90	104	-	6.36207	6.8e-05	0.0412	CAACCCCGACGCAGT
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	9.94406	6.8e-05	0.112	CACACGTGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	9.94406	6.8e-05	0.112	CACACGTGCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	21	31	+	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	21	31	+	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	21	31	+	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	21	31	+	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	40	50	+	10.9231	6.8e-05	0.0172	GGTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	40	50	+	10.9231	6.8e-05	0.0172	GGTCCGCCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	40	50	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	40	50	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	40	50	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	40	50	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	55	65	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	55	65	-	10.9231	6.8e-05	0.0172	ACCCCGCCCAG
RARA::RXRA	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	29	45	+	9.77551	6.81e-05	0.368	GGGGCACAGGGGGCTGA
RARA::RXRA	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	70	86	-	9.77551	6.81e-05	0.368	GGGGCACAGGGGGCTGA
RFX2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	7	22	-	5.95714	6.81e-05	0.38	CGCGACCATGGTAACC
TP73	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	58	75	-	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	58	75	-	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	58	75	-	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	58	75	-	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	2	19	+	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	2	19	+	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	2	19	+	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	2	19	+	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
TP73	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	2	19	+	8.53846	6.81e-05	0.667	TGCAAGTCAGAACTTTCA
NR3C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	-	5.02128	6.81e-05	1	GAGAACATCCAGTACAC
NR3C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	-	5.02128	6.81e-05	1	GAGAACATCCAGTACAC
NR3C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	-	5.02128	6.81e-05	1	GAGAACATCCAGTACAC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	42	56	-	9.57576	6.81e-05	0.318	CCCCTTTCAGTTCCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	42	56	-	9.57576	6.81e-05	0.318	CCCCTTTCAGTTCCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	97	111	+	9.57576	6.81e-05	0.318	CCCCTTTCAGTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	97	111	+	9.57576	6.81e-05	0.318	CCCCTTTCAGTTCCT
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	51	61	-	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	51	61	-	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	69	79	-	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	74	84	-	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	31	41	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	34	44	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	34	44	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	36	46	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	71	81	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	71	81	+	11.3091	6.81e-05	0.0662	CCCCTTCCTGC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	15	25	+	10.0364	6.81e-05	0.0207	GCGTCCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	15	25	+	10.0364	6.81e-05	0.0207	GCGTCCGCGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	18	28	+	10.0364	6.81e-05	0.0207	CCGGTTGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	17	27	-	10.0364	6.81e-05	0.0207	ACGCCGGCCCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	56	66	-	10.0364	6.81e-05	0.0207	GCGTCCGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	87	97	-	10.0364	6.81e-05	0.0207	CCGGTTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	90	100	-	10.0364	6.81e-05	0.0207	GCGTCCGCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	6	19	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	6	19	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	16	29	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	16	29	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	23	36	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	38	51	+	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	64	77	-	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
KLF14	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	79	92	-	8.77586	6.81e-05	0.0358	CTCCCCGCCCCTCC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	7	18	-	9.08197	6.81e-05	0.113	GACCCGGAAGAT
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	7	18	-	9.08197	6.81e-05	0.113	GACCCGGAAGAT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	64	75	+	11.2182	6.81e-05	0.0924	CACCCCCAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	64	75	+	11.2182	6.81e-05	0.0924	CACCCCCAGGCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	64	75	+	11.2182	6.81e-05	0.0924	CACCCCCAGGCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	64	75	+	11.2182	6.81e-05	0.0924	CACCCCCAGGCT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	39	50	-	11.2182	6.81e-05	0.0924	AGCCCCCAGCCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	50	61	-	11.2182	6.81e-05	0.0924	AGCCCCCAGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	85	96	-	11.2182	6.81e-05	0.0924	CGCCCTGGGCCT
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	49	62	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	49	62	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	49	62	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	49	62	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	77	90	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	83	96	-	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	19	32	+	5.59184	6.81e-05	0.0725	GGGGGGGCGGGGGG
POU1F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	39	52	+	10.5345	6.81e-05	1	CGTATGGAAATTAT
POU1F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	39	52	+	10.5345	6.81e-05	1	CGTATGGAAATTAT
POU1F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	39	52	+	10.5345	6.81e-05	1	CGTATGGAAATTAT
CDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	48	56	+	11.1509	6.81e-05	1	CCAATAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	48	56	+	11.1509	6.81e-05	1	CCAATAAAA
CDX1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	49	57	+	11.1509	6.81e-05	1	CCAATAAAA
Klf12	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	7	21	-	8.27869	6.81e-05	0.0689	CACCCCGCCCTGTCG
Klf12	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	94	108	+	8.27869	6.81e-05	0.0689	CACCCCGCCCTGTCG
PAX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	47	63	-	0.454545	6.81e-05	0.501	TTTTCTGCATCACTGCA
PAX9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	47	63	-	0.454545	6.81e-05	0.501	TTTTCTGCATCACTGCA
PAX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	47	63	-	0.454545	6.81e-05	0.501	TTTTCTGCATCACTGCA
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	5	14	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	97	106	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	97	106	-	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	20	29	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	20	29	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	51	60	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	51	60	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	51	60	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	51	60	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	51	60	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	75	84	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	75	84	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	75	84	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	75	84	+	11.5577	6.81e-05	0.439	AAACCACAGT
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	75	84	+	11.5577	6.81e-05	0.439	AAACCACAGT
NR2C2	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	46	60	+	9.35714	6.81e-05	0.122	AAGGAGCAAAGGGGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	54	68	-	9.35714	6.81e-05	0.122	CGAGGGGAGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	54	68	-	9.35714	6.81e-05	0.122	CGAGGGGAGGGGCGG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	55	69	-	9.35714	6.81e-05	0.122	AAGGAGCAAAGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.1.0	20	31	+	11.2545	6.81e-05	0.0577	CACCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:25291462..25291576,-__1311.1.0.0	20	31	+	11.2545	6.81e-05	0.0577	CACCCCCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	23	-	11.2545	6.81e-05	0.0577	CCCCCCGCGGCC
MEIS3	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	9	16	-	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	17	24	-	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	88	95	-	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	96	103	-	11.4231	6.81e-05	0.89	GTGACAGC
Atf3	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	3	10	+	11.5246	6.81e-05	0.504	GATGACGA
Atf3	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	33	40	+	11.5246	6.81e-05	0.504	GATGACGA
Atf3	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	50	57	+	11.5246	6.81e-05	0.504	GATGACGA
Atf3	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	53	60	+	11.5246	6.81e-05	0.504	GATGACGA
Atf3	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	89	96	+	11.5246	6.81e-05	0.504	GATGACGA
Atf3	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	55	62	-	11.5246	6.81e-05	0.504	GATGACGA
Atf3	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	58	65	-	11.5246	6.81e-05	0.504	GATGACGA
Atf3	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	75	82	-	11.5246	6.81e-05	0.504	GATGACGA
MEIS3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	11	18	+	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	19	26	+	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr10:135061353..135061467,-__114.1.0.0	20	27	+	11.4231	6.81e-05	0.89	GTGACAGC
MEIS3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	103	110	+	11.4231	6.81e-05	0.89	GTGACAGC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	21	30	-	10.9286	6.81e-05	0.235	TGCAGCTGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	21	30	-	10.9286	6.81e-05	0.235	TGCAGCTGTC
HES7	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	79	-	3.32759	6.82e-05	0.199	AGGCACGTGGTG
MEF2D	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	9	20	-	6.54545	6.82e-05	1	TCCAAAAATAAC
MEF2D	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	9	20	-	6.54545	6.82e-05	1	TCCAAAAATAAC
JUN	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	72	84	-	10.3469	6.82e-05	0.317	TATCTGACGTCAT
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	72	84	-	10.3469	6.82e-05	0.317	TATCTGACGTCAT
RARA	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	52	69	+	-9.5303	6.82e-05	1	GAGGAAGGAAGTTCAGGG
RARA	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	46	63	-	-9.5303	6.82e-05	1	GAGGAAGGAAGTTCAGGG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	8	21	-	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	8	21	-	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	8	21	-	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	8	21	-	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	41	54	+	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	61	74	-	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
GLIS2	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	94	107	+	8.16393	6.82e-05	0.185	GCCCCCACACTTGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	31	48	+	-14.3947	6.82e-05	0.0538	GGAGGAGGAGGAGGCGGG
ATF4	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	17	29	+	9.7541	6.82e-05	0.622	TCATGACGTAAGC
ATF4	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	40	52	+	9.7541	6.82e-05	0.622	TCATGACGTAAGC
ATF4	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	75	-	9.7541	6.82e-05	0.622	TCATGACGTAAGC
ATF4	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	98	-	9.7541	6.82e-05	0.622	TCATGACGTAAGC
ETV2	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	48	58	+	10.4262	6.82e-05	0.178	GGCCGGAAGTA
ETV2	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	57	67	-	10.4262	6.82e-05	0.178	GGCCGGAAGTA
Tcf12	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	39	49	-	11.7551	6.82e-05	0.189	GACAGGTGGGA
Tcf12	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	76	+	11.7551	6.82e-05	0.189	GACAGGTGGGA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	11	24	-	5.35714	6.82e-05	0.365	TGGCTCCGCCCCAT
RFX5	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	13	28	-	6.67241	6.82e-05	0.341	AGTTGCTCAAACAACC
PKNOX1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	32	43	-	2.53061	6.82e-05	1	CCACAGCTGTCG
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	72	83	+	2.53061	6.82e-05	1	CCACAGCTGTCG
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	72	83	+	2.53061	6.82e-05	1	CCACAGCTGTCG
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	12	21	-	10.7143	6.82e-05	0.0242	TGGGCGAGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	37	46	+	10.7143	6.82e-05	0.0242	TGGGCGAGGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	24	35	-	6.79592	6.82e-05	0.208	GATGACGTAAAG
JDP2(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	24	35	-	6.79592	6.82e-05	0.208	GATGACGTAAAG
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	80	91	+	6.79592	6.82e-05	0.208	GATGACGTAAAG
ETS1	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	22	31	+	11.3793	6.82e-05	0.109	TCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	82	91	+	11.3793	6.82e-05	0.109	TCCGGAAGTC
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	82	91	+	11.3793	6.82e-05	0.109	TCCGGAAGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	33	-	11.3793	6.82e-05	0.109	TCCGGAAGTC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	50	-	11.3793	6.82e-05	0.109	TCCGGAAGTC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	50	-	11.3793	6.82e-05	0.109	TCCGGAAGTC
RELA	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	43	52	-	9.82653	6.82e-05	0.233	GGGGCATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	87	96	+	9.82653	6.82e-05	0.233	GGGGCATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	87	96	+	9.82653	6.82e-05	0.233	GGGGCATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	87	96	+	9.82653	6.82e-05	0.233	GGGGCATCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	87	96	+	9.82653	6.82e-05	0.233	GGGGCATCCC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	61	+	11.7551	6.82e-05	0.178	TGCAGCTGCGGGA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	61	+	11.7551	6.82e-05	0.178	TGCAGCTGCGGGA
NFKB2	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	3	15	-	8.21212	6.82e-05	0.264	TGGGGAGCTCCCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	8	24	-	3.78182	6.82e-05	0.0302	CCAGACCCCCCCCCCAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	8	24	-	3.78182	6.82e-05	0.0302	CCAGACCCCCCCCCCAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	15	31	-	3.78182	6.82e-05	0.0302	GGTGCCGCGCCCCCAAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	15	31	-	3.78182	6.82e-05	0.0302	GGTGCCGCGCCCCCAAC
SP4	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	89	105	-	3.78182	6.82e-05	0.0302	CCAGCTCCGCCGCCATC
Gabpa	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	9	19	+	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	5	15	-	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Gabpa	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	46	56	+	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Gabpa	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	39	49	-	10.9016	6.83e-05	0.0682	ACGGAAGTAGC
Gabpa	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	66	76	+	10.9016	6.83e-05	0.0682	ACGGAAGTAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	59	69	-	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	59	69	-	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	96	106	-	10.9016	6.83e-05	0.0682	CAGGAAGCCGC
Nr2e1	FLIPPED__Antisense.flip.antisense__chr9:139622601..139622715,+__2441.1.0.0	84	92	+	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	9	17	-	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.0	23	31	-	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.1.1	23	31	-	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:139622601..139622715,-__904.1.0.0	23	31	-	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	38	46	-	11.4516	6.83e-05	1	AAGAGTCAA
Nr2e1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	78	86	-	11.4516	6.83e-05	1	AAGAGTCAA
ERF	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	14	23	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	15	24	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	34	43	+	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	37	46	+	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	75	84	+	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	66	75	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	66	75	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	68	77	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	68	77	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	68	77	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	68	77	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	68	77	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	94	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	85	94	-	11.0714	6.83e-05	0.111	ACAGGAAGCA
ERF	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	104	113	+	11.0714	6.83e-05	0.111	ACAGGAAGCA
PRDM1	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	38	52	+	10.3636	6.83e-05	0.322	AGGAAGTGAAGGGGG
PRDM1	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	63	77	-	10.3636	6.83e-05	0.322	AGGAAGTGAAGGGGG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	65	79	-	10.3636	6.83e-05	0.322	AGAAAAAGAAACTGT
CEBPD	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	4	13	+	11.5	6.83e-05	0.805	CTGACGCAAT
CEBPD	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	61	70	-	11.5	6.83e-05	0.805	CTGACGCAAT
OTX1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	18	25	+	11.3617	6.83e-05	1	TTAATCCC
OTX1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	18	25	+	11.3617	6.83e-05	1	ATAATCCG
OTX1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	19	26	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	26	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	26	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	19	26	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	19	26	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	33	40	+	11.3617	6.83e-05	1	TTAATCCC
OTX1	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	35	42	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	43	50	+	11.3617	6.83e-05	1	TTAATCCC
OTX1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	56	63	+	11.3617	6.83e-05	1	ATAATCCG
OTX1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	52	59	-	11.3617	6.83e-05	1	ATAATCCG
OTX1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	64	71	+	11.3617	6.83e-05	1	TTAATCCC
OTX1	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	89	96	+	11.3617	6.83e-05	1	TTAATCCC
OTX1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	90	97	-	11.3617	6.83e-05	1	TTAATCCC
OTX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	90	97	-	11.3617	6.83e-05	1	ATAATCCG
OTX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	90	97	-	11.3617	6.83e-05	1	ATAATCCG
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	20	33	-	9.7	6.83e-05	0.271	CTGTGACGTCAGCT
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	20	33	-	9.7	6.83e-05	0.271	CTGTGACGTCAGCT
Hnf4a	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	8	23	-	3.05455	6.83e-05	0.49	CTGGTCAAAGTACTAG
Hnf4a	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	92	107	+	3.05455	6.83e-05	0.49	CTGGTCAAAGTACTAG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	74	87	+	5.58163	6.83e-05	0.0725	GGGGGCGAGTGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	74	87	+	5.58163	6.83e-05	0.0725	GGGGGCGAGTGAGG
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	108	-	0.307692	6.83e-05	0.932	GGACAGCTGTTA
SP1	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	7	17	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	23	33	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	23	33	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	23	33	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	23	33	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	41	51	+	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	64	74	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	64	74	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	64	74	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	64	74	-	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	98	108	+	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	98	108	+	10.9038	6.83e-05	0.0172	AGCCCTCCCCT
NHLH1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	43	52	+	10.8276	6.83e-05	0.138	CTCAGCTGTG
GLIS1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	36	51	+	-9.42308	6.83e-05	0.329	AGACCGCCCCCGGCCC
GLIS1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	64	79	-	-9.42308	6.83e-05	0.329	AGACCGCCCCCGGCCC
HOXD13	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	56	65	-	11.3016	6.83e-05	1	CCCATAAACC
HOXD13	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	50	59	+	11.3016	6.83e-05	1	CCCATAAACC
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	11.3966	6.83e-05	1	ACCATATGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	68	78	+	9.5	6.83e-05	0.0853	CTGCCCACACA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	25	35	+	11.0325	6.83e-05	0.0235	ACCCCACCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	25	35	+	11.0325	6.83e-05	0.0235	ACCCCACCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	43	53	+	11.0325	6.83e-05	0.0235	ACAACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	43	53	+	11.0325	6.83e-05	0.0235	ACAACACCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	60	70	+	11.0325	6.83e-05	0.0235	ACCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	60	70	+	11.0325	6.83e-05	0.0235	ACCCCACCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	60	70	+	11.0325	6.83e-05	0.0235	ACCCCACCCCG
SP3	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	70	80	+	11.0325	6.83e-05	0.0235	GCCACCCCCCA
SP3	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	83	+	11.0325	6.83e-05	0.0235	GCACCACCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	84	94	+	11.0325	6.83e-05	0.0235	ACAACACCCAC
SP3	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	32	42	-	11.0325	6.83e-05	0.0235	GCACCACCCCC
SP3	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	35	45	-	11.0325	6.83e-05	0.0235	GCCACCCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	63	73	-	11.0325	6.83e-05	0.0235	ACCCCACCCCG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	63	73	-	11.0325	6.83e-05	0.0235	ACCCCACCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	71	81	-	11.0325	6.83e-05	0.0235	ACAACACCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	71	81	-	11.0325	6.83e-05	0.0235	ACAACACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	83	93	-	11.0325	6.83e-05	0.0235	GCCACCCCCCA
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	83	93	-	11.0325	6.83e-05	0.0235	GCCACCCCCCA
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr11:62620470..62620584,-__182.1.0.0	66	74	+	11.1224	6.83e-05	1	TATGCTAAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	67	80	-	5.34694	6.84e-05	0.365	TGGCATGGAGGCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	67	80	-	5.34694	6.84e-05	0.365	TGGCATGGAGGCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	67	80	-	5.34694	6.84e-05	0.365	TGGCATGGAGGCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	67	80	-	5.34694	6.84e-05	0.365	TGGCATGGAGGCAG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	35	48	+	5.34694	6.84e-05	0.365	TGGCATGGAGGCAG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	25	39	+	6.34483	6.84e-05	0.0412	CCCCCCCCCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	25	39	+	6.34483	6.84e-05	0.0412	GGCCGCCCACGGGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	25	39	+	6.34483	6.84e-05	0.0412	GGCCGCCCACGGGCC
EGR3	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	43	57	+	6.34483	6.84e-05	0.0412	GACCGCCCCTGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	29	43	-	6.34483	6.84e-05	0.0412	CCCCCCCCCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	56	70	+	6.34483	6.84e-05	0.0412	CCCCCCCCCCCCGCC
EGR3	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	58	72	-	6.34483	6.84e-05	0.0412	GACCGCCCCTGCGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	7	27	-	9.61224	6.84e-05	0.0199	GGAGCGAGGGAGGGAGGGAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	15	35	-	9.61224	6.84e-05	0.0199	GGAGGTGGAGCCTGGGAGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	15	35	-	9.61224	6.84e-05	0.0199	GGAGGTGGAGCCTGGGAGTGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	15	35	-	9.61224	6.84e-05	0.0199	GGGGAGGAGAGGGGAGAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	22	42	-	9.61224	6.84e-05	0.0199	GGGGGAAGTCGAAGCAAGAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	22	42	-	9.61224	6.84e-05	0.0199	GGGGGAAGTCGAAGCAAGAGA
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	23	43	-	9.61224	6.84e-05	0.0199	GGAGCGCGGAGGGGCGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	23	43	-	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	23	43	-	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	23	43	-	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	23	43	-	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	34	54	-	9.61224	6.84e-05	0.0199	GGGGGGGGCGGGCGGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	34	54	-	9.61224	6.84e-05	0.0199	GGGGGGGGCGGGCGGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	34	54	-	9.61224	6.84e-05	0.0199	GGGGGGGGCGGGCGGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	34	54	-	9.61224	6.84e-05	0.0199	GGGGGGGGCGGGCGGAGGGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	46	66	-	9.61224	6.84e-05	0.0199	AGGGCCTGAGGAGGAGGACGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	55	75	-	9.61224	6.84e-05	0.0199	GAGGGCAGGGCAGAGGAGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	75	95	-	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	88	108	-	9.61224	6.84e-05	0.0199	AGAGGAGCAGGACTTGGATGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	18	38	+	9.61224	6.84e-05	0.0199	CAGGGTGGGAGGGAGGTGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	18	38	+	9.61224	6.84e-05	0.0199	CAGGGTGGGAGGGAGGTGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	20	40	+	9.61224	6.84e-05	0.0199	GGGGGGCGGGGGGGGTGGGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	30	50	+	9.61224	6.84e-05	0.0199	CGGGGAGAGAGGAGGAGTAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	42	62	+	9.61224	6.84e-05	0.0199	GAGGGCAGGGCAGAGGAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.0.0	42	62	+	9.61224	6.84e-05	0.0199	AGAGGATGACAGGCTGTGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	51	71	+	9.61224	6.84e-05	0.0199	AGAGGAGCAGGACTTGGATGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	72	92	+	9.61224	6.84e-05	0.0199	GGAGCGCGGAGGGGCGGGGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	93	113	+	9.61224	6.84e-05	0.0199	AGGGCCTGAGGAGGAGGACGG
PAX9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	80	96	+	0.436364	6.84e-05	0.501	AGTCACGCGAGGCTGGC
CTCF	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	28	46	+	8.67213	6.84e-05	0.124	CGGACAGTGGGCGGCAGAA
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	26	44	-	8.67213	6.84e-05	0.124	AAGTCACGTGAGGGCGCTG
CTCF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	69	87	-	8.67213	6.84e-05	0.124	CGGACAGTGGGCGGCAGAA
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	69	87	-	8.67213	6.84e-05	0.124	CGGACAGTGGGCGGCAGAA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	-	10.2951	6.84e-05	0.0589	AGCCGCACGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	-	10.2951	6.84e-05	0.0589	AGCCGCACGGGCG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	30	50	-	8.93548	6.84e-05	0.187	ACATAGTCTTGCTTTTCTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	30	50	-	8.93548	6.84e-05	0.187	ACATAGTCTTGCTTTTCTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	56	76	+	8.93548	6.84e-05	0.187	ACATAGTCTTGCTTTTCTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	56	76	+	8.93548	6.84e-05	0.187	ACATAGTCTTGCTTTTCTTTT
GATA2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	33	46	-	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
GATA2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	67	80	+	11.5818	6.84e-05	1	TCTTGCTTATCTTA
FOXC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	83	93	-	11.42	6.84e-05	1	AATGTAAACAG
FOXC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	83	93	-	11.42	6.84e-05	1	AATGTAAACAG
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	1	11	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	3	13	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	3	13	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	4	14	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	9	19	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	20	30	+	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	17	27	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	28	38	+	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	18	28	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	35	45	+	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	39	49	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	57	67	+	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	48	58	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	48	58	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	48	58	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	61	71	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	64	74	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	64	74	-	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	82	92	+	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	77	87	-	10.5	6.84e-05	0.0225	TCCCCTCCCCT
KLF16	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	88	98	+	10.5	6.84e-05	0.0225	GCTCCTCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	102	112	+	10.5	6.84e-05	0.0225	TCCCCTCCCCT
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	4	13	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	6	15	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	13	22	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	13	22	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	13	22	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	13	22	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	15	24	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	15	24	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	19	28	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	19	28	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	21	30	+	10.6606	6.84e-05	0.0553	ACCCCTCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	16	25	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	27	36	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	27	36	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	29	38	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	36	45	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	36	45	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	36	45	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	36	45	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	36	45	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	29	38	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	29	38	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	30	39	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	34	43	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	41	50	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	55	64	+	10.6606	6.84e-05	0.0553	ACCCCTCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	49	58	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	49	58	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	49	58	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	49	58	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	51	60	-	10.6606	6.84e-05	0.0553	ACCCCTCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	67	76	-	10.6606	6.84e-05	0.0553	ACCCCTCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	77	86	-	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	90	99	+	10.6606	6.84e-05	0.0553	CCCCGCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	85	94	-	10.6606	6.84e-05	0.0553	ACCCCTCCAC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	25	44	-	3.6789	6.84e-05	0.0643	CCCCCTCCCACCCCGCCCTC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.1	26	45	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.1.0	26	45	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329844..58329958,-__243.1.0.0	26	45	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	71	90	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	71	90	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	71	90	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	71	90	-	3.6789	6.84e-05	0.0643	CCAGCAACCACAACCCTGCC
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	25	35	+	11.1633	6.84e-05	0.222	TGCTGAGTCAT
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	25	35	+	11.1633	6.84e-05	0.222	TGCTGAGTCAT
JUNB	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	56	66	+	11.1633	6.84e-05	0.222	TGCTGAGTCAT
ETV1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	36	45	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	44	53	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	54	63	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	54	63	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	54	63	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	54	63	+	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	27	36	-	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	62	71	-	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	62	71	-	11.4	6.84e-05	0.118	ACCGGAACCG
ETV1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	70	79	-	11.4	6.84e-05	0.118	ACCGGAACCG
Klf1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	14	24	-	10.803	6.85e-05	0.0491	TCCCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	36	46	-	10.803	6.85e-05	0.0491	TCCCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	36	46	-	10.803	6.85e-05	0.0491	TCCCCCGCCCA
Klf1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	53	63	+	10.803	6.85e-05	0.0491	CGACCCGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	49	59	-	10.803	6.85e-05	0.0491	TCCCCCGCCCA
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	11.4634	6.85e-05	0.181	CCCACGTGAT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	11.4634	6.85e-05	0.181	CCCACGTGAT
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	11.4634	6.85e-05	0.181	CCCACGTGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	11.4634	6.85e-05	0.181	CCCACGTGAT
TFEC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	11.4634	6.85e-05	0.181	CCCACGTGAT
NFYA	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	34	51	+	9.13415	6.85e-05	0.197	AGGCTGCCGATCGGCTCG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	96	113	+	9.13415	6.85e-05	0.197	AGGCTGCCGATCGGCTCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	11.1277	6.85e-05	0.12	ACCGGATGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	11.1277	6.85e-05	0.12	ACCGGATGCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	28	41	+	10.25	6.85e-05	0.0256	GCCTCGCCCCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	28	41	+	10.25	6.85e-05	0.0256	GCCTCGCCCCTTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	43	56	-	10.25	6.85e-05	0.0256	GCGCTTCCCACGCT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	7	19	+	9.86207	6.85e-05	0.0554	AGCCTTGGCGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	43	55	+	9.86207	6.85e-05	0.0554	AGCCTTGGCGGCG
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	53	65	+	9.86207	6.85e-05	0.0554	TGCCGCGCAGGCG
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	50	62	-	9.86207	6.85e-05	0.0554	TGCCGCGCAGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	-	9.86207	6.85e-05	0.0554	TGCCGCACAGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	+	9.86207	6.85e-05	0.0554	AGCCCGAGCGGCG
SREBF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	86	95	+	11.2135	6.85e-05	0.871	ATGGGCTGAG
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	86	95	+	11.2135	6.85e-05	0.871	ATGGGCTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	13	22	-	11.2135	6.85e-05	0.871	ATGGGCTGAG
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	13	22	-	11.2135	6.85e-05	0.871	ATGGGCTGAG
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	44	55	+	9.06557	6.85e-05	0.113	GAAGAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	44	55	+	9.06557	6.85e-05	0.113	GAAGAGGAAGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	51	62	+	9.06557	6.85e-05	0.113	GGCCAGGAAGTA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	35	-	9.06557	6.85e-05	0.113	GAAGAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	61	-	9.06557	6.85e-05	0.113	GAAGAGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	53	64	-	9.06557	6.85e-05	0.113	GGCCAGGAAGTA
ELF4	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	71	-	9.06557	6.85e-05	0.113	GAAGAGGAAGTG
KLF14	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	36	49	+	8.75862	6.85e-05	0.0359	ACCCCCGCCCCCGC
KLF14	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	45	58	-	8.75862	6.85e-05	0.0359	GCACACACCCACTC
KLF14	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	68	81	+	8.75862	6.85e-05	0.0359	GAACCCGCCTCCAC
KLF14	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	66	79	-	8.75862	6.85e-05	0.0359	ACCCCCGCCCCCGC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	107	-	11.1429	6.85e-05	0.0245	GTCACACCCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	+	10	6.85e-05	0.0644	AGCCTAAAGGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	-	10	6.85e-05	0.0644	CGCCCAGGAGGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	12	26	+	10.3793	6.85e-05	0.0151	ACCCCGCTCCGCCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	27	41	+	10.3793	6.85e-05	0.0151	CGCCCTCCTTCCTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	27	41	+	10.3793	6.85e-05	0.0151	CGCCCTCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	27	41	+	10.3793	6.85e-05	0.0151	CGCCCTCCTTCCTGC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	27	41	+	10.3793	6.85e-05	0.0151	CGCCCTCCTTCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.0.0	35	49	-	10.3793	6.85e-05	0.0151	GACCCGCCTTTCTCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:71383261..71383375,+__1727.1.1.0	35	49	-	10.3793	6.85e-05	0.0151	GACCCGCCTTTCTCT
SP2	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	51	65	-	10.3793	6.85e-05	0.0151	CCTCCACCCCTGGCT
SP2	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	74	88	-	10.3793	6.85e-05	0.0151	CGCCCTCCTTCCTGC
SP2	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	89	103	+	10.3793	6.85e-05	0.0151	CTCCCTCCCACCGGA
Stat6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	3	17	+	10.8966	6.85e-05	0.763	CCCTTCTGTAGAACC
Stat6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	3	17	+	10.8966	6.85e-05	0.763	CCCTTCTGTAGAACC
Stat6	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	98	112	-	10.8966	6.85e-05	0.763	CCCTTCTGTAGAACC
EHF	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	36	47	-	10.2295	6.85e-05	0.135	GAGACGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	68	79	+	10.2295	6.85e-05	0.135	GAGACGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	68	79	+	10.2295	6.85e-05	0.135	GAGACGGAAGTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	14	28	-	8.2623	6.85e-05	0.069	AGCCCCGCCCCCGGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	14	28	-	8.2623	6.85e-05	0.069	AGCCCCGCCCCCGGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	14	28	-	8.2623	6.85e-05	0.069	AGCCCCGCCCCCGGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	14	28	-	8.2623	6.85e-05	0.069	AGCCCCGCCCCCGGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	72	82	-	10.5636	6.85e-05	0.227	TTTGACTCAGG
NR2C2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	47	61	+	9.34286	6.85e-05	0.122	CGAGGGCGGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	54	68	-	9.34286	6.85e-05	0.122	CGAGGGCGGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	54	68	-	9.34286	6.85e-05	0.122	CGAGGGCGGGGGCGG
ELF3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	12	24	-	8.24138	6.85e-05	0.167	TTCCCGGAAGCCG
ELF3	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	37	49	+	8.24138	6.85e-05	0.167	AAGCCGGACGTGG
ELF3	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	42	54	-	8.24138	6.85e-05	0.167	AAGCCGGACGTGG
ELF3	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	61	73	+	8.24138	6.85e-05	0.167	AAGCCGGACGTGG
ELF3	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	66	78	-	8.24138	6.85e-05	0.167	AAGCCGGACGTGG
ELF3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	91	103	+	8.24138	6.85e-05	0.167	TTCCCGGAAGCCG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	+	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	+	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	+	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	+	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	-	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	+	5.65306	6.86e-05	0.342	CATGAGTCAGG
NFE2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	-	5.65306	6.86e-05	0.342	CATGAGTCAGG
HLF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	+	11.5593	6.86e-05	1	CGTTGCGTAATT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	67	80	+	8.14754	6.86e-05	0.185	CGCCCCCCTGGGCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	67	80	+	8.14754	6.86e-05	0.185	CGCCCCCCTGGGCG
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	47	58	-	3.31034	6.86e-05	0.199	CGGCACGCACCA
FOS	WILDTYPE__Enhancer.noflip.NA__chr1:209822697..209822811,-__2029.1.0.0	38	48	+	11.4468	6.86e-05	0.259	TGTTAGTCATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr1:209822704..209822818,+__1736.1.0.0	60	70	-	11.4468	6.86e-05	0.259	TGTTAGTCATG
SP4	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	14	30	+	3.76364	6.86e-05	0.0303	CCCGCTCCGCCCCGTCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	23	39	-	3.76364	6.86e-05	0.0303	TGCGCCACCCCCATCCT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	25	39	+	10.4274	6.86e-05	1	CCTTGATTTGCATAT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	3	18	-	10.2364	6.86e-05	0.0398	GAACGCGCACGCGCGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	3	18	-	10.2364	6.86e-05	0.0398	GAACGCGCACGCGCGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	3	18	-	10.2364	6.86e-05	0.0398	GAACGCGCACGCGCGC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	3	18	-	10.2364	6.86e-05	0.0398	GAACGCGCACGCGCGC
EGR4	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	10	25	-	10.2364	6.86e-05	0.0398	ACCCGCCCCGCCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	41	56	+	10.2364	6.86e-05	0.0398	GCCCGCCCGCCCTTCC
EGR4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	59	74	-	10.2364	6.86e-05	0.0398	GCCCGCCCGCCCTTCC
POU4F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	43	58	+	7.14545	6.86e-05	1	TCGAATATATAAGGAG
POU4F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	43	58	+	7.14545	6.86e-05	1	TCGAATATATAAGGAG
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	26	37	-	10.8026	6.86e-05	0.0331	GCCCCCCCCCAC
SP8	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	80	91	-	10.8026	6.86e-05	0.0331	CCAACGCCCGCT
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	87	99	-	9.65714	6.86e-05	0.731	TTCCCAGATGCGC
ELF5	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	97	+	11.3636	6.86e-05	0.143	TCCCGGAAGGG
ELF5	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	18	28	-	11.3636	6.86e-05	0.143	TCCCGGAAGGG
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	40	50	-	11.3636	6.86e-05	0.143	TCCCGGAAGGG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	40	50	-	11.3636	6.86e-05	0.143	TCCCGGAAGGG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	40	50	-	11.3636	6.86e-05	0.143	TCCCGGAAGGG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	40	50	-	11.3636	6.86e-05	0.143	TCCCGGAAGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	48	58	+	11.2909	6.86e-05	0.0551	CGCCTAGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	48	58	+	11.2909	6.86e-05	0.0551	CGCCTAGGGCT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	-	11.2909	6.86e-05	0.0551	AGCCCGAGGGT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	99	109	+	11.2909	6.86e-05	0.0551	CGGCTCAGGCA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	29	42	-	0.848485	6.86e-05	0.221	CAGTGACGTCACGC
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	29	42	-	0.848485	6.86e-05	0.221	CAGTGACGTCACGC
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	29	42	-	0.848485	6.86e-05	0.221	CAGTGACGTCACGC
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	29	42	-	0.848485	6.86e-05	0.221	CAGTGACGTCACGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	1	20	+	3.66972	6.86e-05	0.0643	ACGCCAATCCCCCCCCTCCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	29	48	+	3.66972	6.86e-05	0.0643	CCACCCCGCAGCCCACCCAC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	22	32	-	11.2909	6.86e-05	0.0666	TCACTTCCTGA
HOXA2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.3208	6.86e-05	1	CCTAATTAGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	49	66	-	-14.4605	6.86e-05	0.0538	CGGAGAGGGGAAGCCAGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	8	22	-	10.3273	6.86e-05	0.109	GCCCCCCCGGGGCAA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	2	16	+	10.3273	6.86e-05	0.109	CCCCGCCCGCCGCTT
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	2	16	+	10.3273	6.86e-05	0.109	CCCCGCCCGCCGCTT
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	47	66	+	7.03333	6.86e-05	1	CTGGGTCACCCGCACCCCAC
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	91	101	-	11.0408	6.86e-05	0.306	CTGCCTGGAAC
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	91	101	-	11.0408	6.86e-05	0.306	CTGCCTGGAAC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	12.1061	6.86e-05	0.321	CGCACGTGAT
MNT	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	12.1061	6.86e-05	0.321	CGCACGTGAT
Creb5	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	40	51	-	8.72727	6.86e-05	0.231	AATGACGTTATC
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	56	70	-	10.8198	6.87e-05	0.188	GTGGCGGAGAGGGGA
HSF2	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	18	30	+	8.98182	6.87e-05	1	TTCCAGATTGGTC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	2	12	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	2	12	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	12	22	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	12	22	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	15	25	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	15	25	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	15	25	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	15	25	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	16	26	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	22	32	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	32	42	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	35	45	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	35	45	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	35	45	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	35	45	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	35	45	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	38	48	+	10.0182	6.87e-05	0.0207	GCGGCGGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	38	48	+	10.0182	6.87e-05	0.0207	GCGGCGGCCCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	38	48	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	67	77	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	67	77	+	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	70	80	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	73	83	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	73	83	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	86	96	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	86	96	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	86	96	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	86	96	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	103	113	-	10.0182	6.87e-05	0.0207	GCGTGCGCGCG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	84	97	+	5.56122	6.87e-05	0.0725	CCGGCCCTAGGGGG
OLIG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	-	11.1552	6.87e-05	1	GACATATGCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	9	22	-	6.29787	6.87e-05	0.1	CGCCACCTCCTGCG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	67	79	-	2.10204	6.87e-05	0.253	TGGGAAATCCCTG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	68	80	+	2.10204	6.87e-05	0.253	TGGGAAATCCCTG
RARA::RXRA	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	55	71	+	9.7551	6.87e-05	0.368	AGGGCACAAAAAGCGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	44	60	-	9.7551	6.87e-05	0.368	AGGGCACAAAAAGCGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	44	60	-	9.7551	6.87e-05	0.368	AGGGCACAAAAAGCGCA
Hes2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	9	21	+	10.7143	6.87e-05	0.547	GAGCGGCGCGTGC
Hes2	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	31	43	-	10.7143	6.87e-05	0.547	GACCGGCGCGTGC
USF2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	40	50	-	11.3061	6.87e-05	0.154	GTCACGTGGGC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	75	+	11.3061	6.87e-05	0.154	GTCACGTGGGC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	75	+	11.3061	6.87e-05	0.154	GTCACGTGGGC
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	75	+	11.3061	6.87e-05	0.154	GTCACGTGGGC
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	75	+	11.3061	6.87e-05	0.154	GTCACGTGGGC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	11.9808	6.87e-05	0.298	CGCACGTGAT
MAX	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	11.9808	6.87e-05	0.298	CGCACGTGAT
TCF3	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	33	+	12.2692	6.87e-05	0.404	ACCACCTGTT
TCF3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	36	45	+	12.2692	6.87e-05	0.404	GGCACCTGGG
TCF3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	70	79	-	12.2692	6.87e-05	0.404	GGCACCTGGG
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	84	93	-	12.2692	6.87e-05	0.404	GGCACCTGGG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	58	76	+	10.5968	6.87e-05	0.674	TGCCCCCTGGTGGCCACAG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	58	76	+	10.5968	6.87e-05	0.674	TGCCCCCTGGTGGCCACAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	46	56	-	11.4082	6.87e-05	0.379	TCTTCTTAGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	46	56	-	11.4082	6.87e-05	0.379	TCTTCTTAGAA
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	85	95	-	11.4082	6.87e-05	0.379	TTTTCCAGGAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	19	36	+	-14.4737	6.87e-05	0.0538	GGAGGCAGGGAGGGAGAC
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	21	38	+	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
EWSR1-FLI1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	21	38	+	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	21	38	+	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
EWSR1-FLI1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	21	38	+	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	21	38	+	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
EWSR1-FLI1	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	77	94	-	-14.4737	6.87e-05	0.0538	GCAGGGAGGGCAGGAGCC
Ar	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	7	23	-	6.58621	6.88e-05	0.882	AAGCAGACACTGTGCCC
JUN	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	52	64	+	10.3265	6.88e-05	0.317	GCAATGATGTCAA
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	69	81	+	10.3265	6.88e-05	0.317	AGAGTGATGCCAG
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	69	81	+	10.3265	6.88e-05	0.317	AGAGTGATGCCAG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	30	40	+	11.0364	6.88e-05	0.0702	GGCCCAAGGCG
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	46	+	11.0364	6.88e-05	0.0702	AGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	56	66	+	11.0364	6.88e-05	0.0702	AGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	56	66	+	11.0364	6.88e-05	0.0702	AGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	51	61	-	11.0364	6.88e-05	0.0702	GGCCCAAGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	69	79	-	11.0364	6.88e-05	0.0702	AGCCCGGGGCC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	17	31	+	7.27632	6.88e-05	0.259	GGCCTTACTGAGCTG
Bach1::Mafk	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	84	98	-	7.27632	6.88e-05	0.259	GGCCTTACTGAGCTG
EGR3	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	12	26	+	6.32759	6.88e-05	0.0412	CACCTCCGACGCAAG
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	3	17	-	6.32759	6.88e-05	0.0412	CCCCCCCCACCCTTT
EGR3	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	7	21	-	6.32759	6.88e-05	0.0412	CACCTCCGACGCAAG
EGR3	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	42	56	+	6.32759	6.88e-05	0.0412	CCCCGCCCCTGCCCG
EGR3	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	44	58	+	6.32759	6.88e-05	0.0412	GCCCGCCCTCCCATC
EGR3	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	47	61	+	6.32759	6.88e-05	0.0412	TTCCGGCCCCGCCCC
EGR3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	34	48	-	6.32759	6.88e-05	0.0412	CCCCGCCCCTGCCCG
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	67	81	+	6.32759	6.88e-05	0.0412	CCCCGCCCCTGCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	54	68	-	6.32759	6.88e-05	0.0412	TTCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	54	68	-	6.32759	6.88e-05	0.0412	TTCCGGCCCCGCCCC
EGR3	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	59	73	-	6.32759	6.88e-05	0.0412	CCCCGCCCCTGCCCG
EGR3	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	66	80	-	6.32759	6.88e-05	0.0412	CTCCTCCCACCCGAC
EGR3	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	94	108	+	6.32759	6.88e-05	0.0412	CACCTCCGACGCAAG
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	98	112	+	6.32759	6.88e-05	0.0412	CCCCCCCCACCCTTT
EGR3	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	89	103	-	6.32759	6.88e-05	0.0412	CACCTCCGACGCAAG
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	41	52	+	4.7561	6.88e-05	0.631	CCTCCCGCCGAC
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	41	52	+	4.7561	6.88e-05	0.631	CCTCCCGCCGAC
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	41	52	+	4.7561	6.88e-05	0.631	CCTCCCGCCGAC
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	41	52	+	4.7561	6.88e-05	0.631	CCTCCCGCCGAC
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	74	-	9.72131	6.88e-05	0.622	CTGTGACGTAACA
TEAD1	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	46	55	-	11.2258	6.88e-05	1	CGCATTCCGA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	-	9.98361	6.88e-05	0.0644	GCCCTCGCGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	+	9.98361	6.88e-05	0.0644	GCCCTCGCGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	+	9.98361	6.88e-05	0.0644	GCCCTCGCGGGCT
FOXH1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	98	108	+	11.3846	6.88e-05	1	GCCAATAAACA
RREB1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	41	60	-	3.66055	6.88e-05	0.0643	ACAGCCACCACAAGCCGCGG
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	52	65	-	8.62903	6.88e-05	0.731	CTGAAAACAAAAGA
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	85	102	-	6.4898	6.88e-05	0.979	GTCTTGTGCATGCATGTA
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	31	45	+	10.2576	6.88e-05	0.115	CCCTCACGTGACTTC
TP63	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	+	-2.03448	6.88e-05	0.937	TGCAAGCCGCCACTTGTT
TP63	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	+	-2.03448	6.88e-05	0.937	TGCAAGCCGCCACTTGTT
TP63	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	+	-2.03448	6.88e-05	0.937	TGCAAGCCGCCACTTGTT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	23	33	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	23	33	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	24	34	-	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	28	38	-	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	40	50	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	40	50	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	44	54	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	44	54	+	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	55	65	-	9.48276	6.88e-05	0.0853	CCGCCCCCTCG
HSF1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	13	25	+	6.96721	6.88e-05	1	TTCCGGAAGATTG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	7	18	+	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	7	18	+	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	15	-	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	15	-	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	15	-	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	15	-	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	15	26	-	11.2364	6.88e-05	0.0577	TGGCCCAGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	61	72	-	11.2364	6.88e-05	0.0577	CGCCCCCGGGAA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	61	72	-	11.2364	6.88e-05	0.0577	CGCCCCCGGGAA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	97	108	+	11.2364	6.88e-05	0.0577	CGGCCGGGGGCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	69	79	-	10.4828	6.88e-05	0.0226	GACCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	69	79	-	10.4828	6.88e-05	0.0226	GACCCTCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	94	104	-	10.4828	6.88e-05	0.0226	GACCCTCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	104	114	-	10.4828	6.88e-05	0.0226	GTCCCACCCAC
IRF1	WILDTYPE__mrna.noflip.NA__chr3:51976956..51977070,+__1389.1.0.0	53	73	-	8.91935	6.88e-05	0.187	AGGCTCTCTCTCTTCCACTTC
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	76	96	+	8.91935	6.88e-05	0.187	AATCAGTTTCAGTCTCGAGGT
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	76	96	+	8.91935	6.88e-05	0.187	AATCAGTTTCAGTCTCGAGGT
HES5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	35	46	+	2.58621	6.88e-05	0.298	TGACACGAGCCT
HES5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	69	80	-	2.58621	6.88e-05	0.298	TGACACGAGCCT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	36	47	+	11.2	6.89e-05	0.0924	GACCCCGAGGCA
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	77	86	-	11.5192	6.89e-05	0.439	CCACCGCAAA
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	77	86	-	11.5192	6.89e-05	0.439	CCACCGCAAA
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	77	86	-	11.5192	6.89e-05	0.439	CCACCGCAAA
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	77	86	-	11.5192	6.89e-05	0.439	CCACCGCAAA
RUNX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	77	86	-	11.5192	6.89e-05	0.439	CCACCGCAAA
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	9	22	-	5.31633	6.89e-05	0.365	AGGCCCTCAGCCAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	27	45	+	8.65574	6.89e-05	0.124	TCTCCAGGAGGGAGCGAGA
CTCF	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	51	69	+	8.65574	6.89e-05	0.124	GAGCCTCTAGGTGTAAGGA
CTCF	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	46	64	-	8.65574	6.89e-05	0.124	GAGCCTCTAGGTGTAAGGA
CTCF	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	90	108	+	8.65574	6.89e-05	0.124	CGGCCTGTGGGGAGCGATG
INSM1	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	40	51	+	9.83673	6.89e-05	0.185	TGGCTGGGGTAT
INSM1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	40	51	+	9.83673	6.89e-05	0.185	TGGCTGGGGTAT
INSM1	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	64	75	-	9.83673	6.89e-05	0.185	TGGCTGGGGTAT
ELF3	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	31	43	-	8.22414	6.89e-05	0.168	GAGCCGGAAGGGC
E2F2	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	28	43	-	1.07317	6.89e-05	1	CTTTCGGCGCCATTTT
E2F2	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	43	58	+	1.07317	6.89e-05	1	CTTTCGGCGCCATTTT
E2F2	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	72	87	+	1.07317	6.89e-05	1	CTTTCGGCGCCATTTT
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	22	34	-	8.18182	6.89e-05	0.264	GGGGGATCCCCTC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	80	94	+	10.3455	6.89e-05	0.323	AGAAAGCAAAAGTAT
RUNX1	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	24	34	-	11.2759	6.89e-05	0.285	GTCTGGGGTTT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	56	66	+	11.2759	6.89e-05	0.285	ACCTGTGGTCA
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	81	91	+	11.2759	6.89e-05	0.285	GTCTGGGGTTT
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	81	91	+	11.2759	6.89e-05	0.285	GTCTGGGGTTT
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	20	31	+	2.98361	6.89e-05	0.598	GGACAGCTGCAA
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	20	31	+	2.98361	6.89e-05	0.598	GGACAGCTGCAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	4	20	+	3.74545	6.89e-05	0.0304	GCCTCCCCGCCCCTCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	4	20	+	3.74545	6.89e-05	0.0304	GCCTCCCCGCCCCTCCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	52	68	-	3.74545	6.89e-05	0.0304	TCTGCCCCACCCCTCCC
SP4	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	64	80	-	3.74545	6.89e-05	0.0304	CGGCCCACGCCCTCCCC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	+	11.1633	6.89e-05	0.0866	AGCCGCCGGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	14	-	11.1633	6.89e-05	0.0866	CCCCCTCGGGCC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	2	15	-	6.26829	6.89e-05	0.5	TCTGATCACGTCGC
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	2	15	-	6.26829	6.89e-05	0.5	TCTGATCACGTCGC
MTF1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	69	82	-	6.26829	6.89e-05	0.5	TCTGATCACGTCGC
E2F6	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	11	21	-	11.1207	6.89e-05	0.0706	CGGAGGGAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	21	31	-	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	37	47	-	11.1207	6.89e-05	0.0706	CGGCGGGAGCA
E2F6	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	46	56	-	11.1207	6.89e-05	0.0706	CGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	58	68	-	11.1207	6.89e-05	0.0706	TCGCGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	58	68	-	11.1207	6.89e-05	0.0706	TCGCGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	58	68	-	11.1207	6.89e-05	0.0706	TCGCGGGAGCA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	58	68	-	11.1207	6.89e-05	0.0706	TCGCGGGAGCA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	22	32	+	11.1207	6.89e-05	0.0706	CGGAGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	22	32	+	11.1207	6.89e-05	0.0706	CGGAGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	84	94	+	11.1207	6.89e-05	0.0706	CGGAGGGAAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	17	31	-	8.2459	6.89e-05	0.069	CGCCCCGCCCCGCTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	17	31	-	8.2459	6.89e-05	0.069	CGCCCCGCCCCGCTC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	69	83	+	8.2459	6.89e-05	0.069	CGCCCCGCCCCGCTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	69	83	+	8.2459	6.89e-05	0.069	CGCCCCGCCCCGCTC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	+	10.2787	6.89e-05	0.0589	TGCCTGTCGGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	+	10.2787	6.89e-05	0.0589	TGCCTGTCGGGCC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	-	10.2787	6.89e-05	0.0589	TGCCTGTCGGGCC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	-	10.2787	6.89e-05	0.0589	TCCCTGCGGGGGG
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	-	10.2787	6.89e-05	0.0589	TGCCTGTCGGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	87	99	-	10.2787	6.89e-05	0.0589	AGCCCCGCCGGCC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	59	70	+	9.04918	6.89e-05	0.113	AAGCCGGGAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	83	94	+	9.04918	6.89e-05	0.113	AAGCCGGGAGTG
ELF4	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	21	32	-	9.04918	6.89e-05	0.113	AAGCCGGGAGTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	79	90	-	9.04918	6.89e-05	0.113	AAGCCGGGAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	79	90	-	9.04918	6.89e-05	0.113	AAGCCGGGAGTG
PAX5	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	43	61	+	10.5	6.89e-05	0.15	GTTCGCACGCATGCGTGAC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	40	58	-	10.5	6.89e-05	0.15	CGGGGCTCGCGGGCGGGAC
PAX5	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	54	72	-	10.5	6.89e-05	0.15	GTTCGCACGCATGCGTGAC
NR2C2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	21	35	-	9.32857	6.89e-05	0.122	CGGGGGGAGGGAGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	25	39	-	9.32857	6.89e-05	0.122	GAGGGGCAGGAGGCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	25	39	-	9.32857	6.89e-05	0.122	GAGGGGCAGGAGGCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	25	39	-	9.32857	6.89e-05	0.122	GAGGGGCAGGAGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	25	39	-	9.32857	6.89e-05	0.122	GAGGGGCAGGAGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	76	90	+	9.32857	6.89e-05	0.122	GAGGGGCAGGAGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	80	94	+	9.32857	6.89e-05	0.122	CGGGGGGAGGGAGCG
ELK4	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	13	23	-	11.2727	6.89e-05	0.0666	CCCCTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	46	56	+	11.2727	6.89e-05	0.0666	ACGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	46	56	+	11.2727	6.89e-05	0.0666	ACGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	46	56	+	11.2727	6.89e-05	0.0666	ACGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	46	56	+	11.2727	6.89e-05	0.0666	ACGTTTCCGGG
SP1	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	15	25	+	10.8846	6.89e-05	0.0173	CCTCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	8	18	-	10.8846	6.89e-05	0.0173	CCTCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	8	18	-	10.8846	6.89e-05	0.0173	CCTCCTCCCTT
SP1	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	16	26	-	10.8846	6.89e-05	0.0173	CCTCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	39	49	+	10.8846	6.89e-05	0.0173	ACTCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	39	49	+	10.8846	6.89e-05	0.0173	ACTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	39	49	+	10.8846	6.89e-05	0.0173	ACTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	39	49	+	10.8846	6.89e-05	0.0173	ACTCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	54	64	-	10.8846	6.89e-05	0.0173	CCTCCACCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	69	79	+	10.8846	6.89e-05	0.0173	CCTCCTCCCTT
SRF	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	5	20	-	5.11475	6.89e-05	1	CAACCTTATTTGGAAA
SRF	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	91	106	+	5.11475	6.89e-05	1	CAACCTTATTTGGAAA
ETV3	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	23	32	+	11.1268	6.89e-05	0.16	ACCGGCAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	83	92	-	11.1268	6.89e-05	0.16	ACCGGCAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	83	92	-	11.1268	6.89e-05	0.16	ACCGGCAGTC
ETV3	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	95	104	-	11.1268	6.89e-05	0.16	ACCGGCAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	10.234	6.9e-05	0.0955	AGCGGAAGCG
ELK1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	10.234	6.9e-05	0.0955	AGCGGAAGCG
KLF14	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	33	46	+	8.74138	6.9e-05	0.0361	CCTCCCGCCCCCCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	81	94	+	8.74138	6.9e-05	0.0361	TGCTCCTCCCCCTT
KLF14	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	69	82	-	8.74138	6.9e-05	0.0361	CCTCCCGCCCCCCC
CEBPA	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	71	81	+	11.5102	6.9e-05	0.79	GTTGCTCAATA
CEBPA	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	34	44	-	11.5102	6.9e-05	0.79	GTTGCTCAATA
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	92	107	-	3.01818	6.9e-05	0.49	TAGTCCAAAGGCCAAG
E2F4	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	3	13	+	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	34	44	-	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	47	57	-	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	58	68	+	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	71	81	+	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	94	104	+	10.8966	6.9e-05	0.0506	GGGCGAGAAAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	94	104	+	10.8966	6.9e-05	0.0506	GGGCGAGAAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	94	104	+	10.8966	6.9e-05	0.0506	GGGCGAGAAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	94	104	+	10.8966	6.9e-05	0.0506	GGGCGAGAAAG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	90	100	-	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
E2F4	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	102	112	-	10.8966	6.9e-05	0.0506	CGGCGGGGGAG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	22	-	9.84483	6.9e-05	0.0554	GCCCCCCCGGGGC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	12	22	+	11.102	6.9e-05	0.223	GTGTGACTCAA
TBX19	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	11	30	-	9.19512	6.9e-05	1	GATGACATCCATTTGTCACA
TBX19	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	32	51	+	9.19512	6.9e-05	1	GATGACATCCATTTGTCACA
TBX19	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	32	51	+	9.19512	6.9e-05	1	GATGACATCCATTTGTCACA
GLIS2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	22	-	8.13115	6.9e-05	0.185	GCCCCCCCGGGGCA
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	30	39	-	9.56364	6.9e-05	0.254	GTCACCCGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	76	85	+	9.56364	6.9e-05	0.254	GTCACCCGAC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	89	103	+	9.54545	6.9e-05	0.318	CAGGTTCCGTTTTTC
EBF1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	2	15	+	9.08197	6.9e-05	0.365	AGTCCCGGGGGTCC
EBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	3	16	-	9.08197	6.9e-05	0.365	GTTCCCGCGGGAGA
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	3	16	-	9.08197	6.9e-05	0.365	GTTCCCGCGGGAGA
EBF1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	40	53	-	9.08197	6.9e-05	0.365	AGTCCCGGGGGTCC
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	62	75	+	9.08197	6.9e-05	0.365	AGTCCCGGGGGTCC
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	62	75	+	9.08197	6.9e-05	0.365	AGTCCCGGGGGTCC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	74	87	+	9.08197	6.9e-05	0.365	ATTCCCAACAGACT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	96	109	+	9.08197	6.9e-05	0.365	GCTCCCAGGAGAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	10	29	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	10	29	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	10	29	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	10	29	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	50	69	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	76	95	-	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	20	39	+	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
RREB1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	46	65	+	3.65138	6.9e-05	0.0643	CCCCGCCCCAGCCCCGCCCC
POU4F3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	43	58	+	10.7244	6.9e-05	1	CGTCATAATTAATTGC
POU4F3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	43	58	+	10.7244	6.9e-05	1	CGTCATAATTAATTGC
POU4F3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	72	-	10.7244	6.9e-05	1	CGTCATAATTAATTGC
ERF	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	11.0286	6.9e-05	0.111	CCCGGAAGTA
ERF	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	11.0286	6.9e-05	0.111	CCCGGAAGTA
Vdr	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	30	45	-	3.96721	6.9e-05	0.833	GACGTCACCAAGTGCA
Vdr	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	70	85	+	3.96721	6.9e-05	0.833	GACGTCACCAAGTGCA
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	57	72	+	-9.48077	6.9e-05	0.329	ACGCCGCCCTCGTCGC
MEOX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	11.2	6.9e-05	1	AGTAATTAAG
Myog	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	32	42	-	11.7959	6.9e-05	0.168	CACAGCTGTCG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	83	+	11.7959	6.9e-05	0.168	CACAGCTGTCG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	83	+	11.7959	6.9e-05	0.168	CACAGCTGTCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	16	26	+	11.0244	6.9e-05	0.0237	GACACACCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	16	26	+	11.0244	6.9e-05	0.0237	GACACACCTCC
ELF1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	60	71	+	8.96364	6.91e-05	0.122	ACAACGGAAGTA
EGR1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	44	57	-	10.2308	6.91e-05	0.0257	TCCCCACCGCCATC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	58	71	+	10.2308	6.91e-05	0.0257	TCCCCACCGCCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	58	71	+	10.2308	6.91e-05	0.0257	TCCCCACCGCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	58	71	+	10.2308	6.91e-05	0.0257	TCCCCACCGCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	84	97	-	10.2308	6.91e-05	0.0257	TGTCCGCCCACAGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	84	97	-	10.2308	6.91e-05	0.0257	TGTCCGCCCACAGA
GCM1	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	15	25	+	10.8367	6.91e-05	0.531	CATGCCGGTGC
GCM1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	9	19	-	10.8367	6.91e-05	0.531	CGTGCTGGTGG
GCM1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	23	33	+	10.8367	6.91e-05	0.531	CGTGCTGGTGG
GCM1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	82	92	-	10.8367	6.91e-05	0.531	CGTGCTGGTGG
GCM1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	96	106	+	10.8367	6.91e-05	0.531	CGTGCTGGTGG
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	90	100	-	10.8367	6.91e-05	0.531	CATGCCGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	90	100	-	10.8367	6.91e-05	0.531	CATGCCGGTGC
GCM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	90	100	-	10.8367	6.91e-05	0.531	CATGCCGGTGC
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	90	100	-	10.8367	6.91e-05	0.531	CATGCCGGTGC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	87	98	-	3.27586	6.91e-05	0.199	CGGCACGGGGCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	87	98	-	3.27586	6.91e-05	0.199	CGGCACGGGGCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	87	98	-	3.27586	6.91e-05	0.199	CGGCACGGGGCG
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	9	20	-	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	9	20	-	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	9	20	-	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	9	20	-	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	27	38	+	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	77	88	-	2.56897	6.91e-05	0.298	TGACACGGGCCT
HES5	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	95	106	+	2.56897	6.91e-05	0.298	TGACACGGGCCT
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	8	22	+	10.8108	6.91e-05	0.188	GGAGGGGAGGGGGCG
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	37	51	+	10.8108	6.91e-05	0.188	GGAGGGGAGGGGGCG
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	64	78	-	10.8108	6.91e-05	0.188	GGAGGGGAGGGGGCG
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	93	107	-	10.8108	6.91e-05	0.188	GGAGGGGAGGGGGCG
GCM2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	100	109	+	11.1639	6.91e-05	0.726	GCTGCGGGTG
ZNF263	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	9	29	-	9.59184	6.91e-05	0.02	GGAGGGAGGGAGGGTGGGGAC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	35	55	-	9.59184	6.91e-05	0.02	AGAGGAAGAGGCATTTGAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	75	95	-	9.59184	6.91e-05	0.02	GAAGAAGAGGAAAAAAAAAAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	91	111	-	9.59184	6.91e-05	0.02	AAGGGTGGGGGGGGCGTGAAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	4	24	+	9.59184	6.91e-05	0.02	AAGGGTGGGGGGGGCGTGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	8	28	+	9.59184	6.91e-05	0.02	CGTGGAGGCCGGGGCGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	8	28	+	9.59184	6.91e-05	0.02	CGTGGAGGCCGGGGCGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	8	28	+	9.59184	6.91e-05	0.02	CGTGGAGGCCGGGGCGGGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	18	38	+	9.59184	6.91e-05	0.02	CAGTGAGCAGTAGGGGGAAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	20	40	+	9.59184	6.91e-05	0.02	GAAGAAGAGGAAAAAAAAAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	30	50	+	9.59184	6.91e-05	0.02	GGAGGGGGCGGGGCCGGGGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	31	51	+	9.59184	6.91e-05	0.02	CGAGGTGGGGGGGCAGGGTTA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	39	59	+	9.59184	6.91e-05	0.02	GGGGGAGAAGGCGATTGGATG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	39	59	+	9.59184	6.91e-05	0.02	GGGGGAGAAGGCGATTGGATG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	45	65	+	9.59184	6.91e-05	0.02	GAGTAAGAGAAAGGGGAAGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	86	106	+	9.59184	6.91e-05	0.02	GGAGGGAGGGAGGGTGGGGAC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	45	59	+	10.3621	6.91e-05	0.0152	CCTCCACCTCTCCTC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	45	59	+	10.3621	6.91e-05	0.0152	CCTCCACCTCTCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	45	59	+	10.3621	6.91e-05	0.0152	CCTCCACCTCTCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	36	50	-	10.3621	6.91e-05	0.0152	ACCCCGCCCAGGCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	36	50	-	10.3621	6.91e-05	0.0152	ACCCCGCCCAGGCGT
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	36	50	-	10.3621	6.91e-05	0.0152	ACCCCGCCCAGGCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	36	50	-	10.3621	6.91e-05	0.0152	ACCCCGCCCAGGCGT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	66	80	+	10.3621	6.91e-05	0.0152	GCCCTGCCTACCACG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	66	80	+	10.3621	6.91e-05	0.0152	GCCCTGCCTACCACG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	66	80	+	10.3621	6.91e-05	0.0152	GCCCTGCCTACCACG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	66	80	+	10.3621	6.91e-05	0.0152	GCCCTGCCTACCACG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	66	80	+	10.3621	6.91e-05	0.0152	GCCCTGCCTACCACG
SP2	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	56	70	-	10.3621	6.91e-05	0.0152	CCTCCACCTCTCCTC
ZIC3	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	8	22	-	8.05714	6.91e-05	0.117	CCCACCCCACTGAGG
ZIC3	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	21	35	-	8.05714	6.91e-05	0.117	GCCCTCCCGCCTGGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	80	94	+	8.05714	6.91e-05	0.117	GCCCTCCCGCCTGGC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	5	18	+	5.54082	6.91e-05	0.0725	GGGCGTCAGGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	55	68	+	5.54082	6.91e-05	0.0725	GGGTGCTGAAGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	55	68	+	5.54082	6.91e-05	0.0725	GGGTGCTGAAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	94	107	+	5.54082	6.91e-05	0.0725	GGGTGCTGAAGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	94	107	+	5.54082	6.91e-05	0.0725	GGGTGCTGAAGGGG
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	11	23	-	10.7541	6.91e-05	0.359	TGGTCTGCCAGCT
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	92	104	+	10.7541	6.91e-05	0.359	TGGTCTGCCAGCT
EMX1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	-	10.4248	6.91e-05	1	CCTAATTGGC
HINFP	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	26	37	-	10.6667	6.91e-05	0.109	CGGCGTGCGCTT
HINFP	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	42	53	+	10.6667	6.91e-05	0.109	CCACGTCCGGCT
HINFP	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	38	49	-	10.6667	6.91e-05	0.109	CCACGTCCGGCT
HINFP	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	55	66	+	10.6667	6.91e-05	0.109	CGGCGTGCGCTT
HINFP	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	49	60	-	10.6667	6.91e-05	0.109	CGGCGTGCGCTT
HINFP	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	66	77	+	10.6667	6.91e-05	0.109	CCACGTCCGGCT
HINFP	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	62	73	-	10.6667	6.91e-05	0.109	CCACGTCCGGCT
HINFP	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	78	89	+	10.6667	6.91e-05	0.109	CGGCGTGCGCTT
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	61	73	+	9.96721	6.91e-05	0.0644	GCCCCTCCAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	68	80	+	9.96721	6.91e-05	0.0644	GCCCCCCTGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	68	80	+	9.96721	6.91e-05	0.0644	GCCCCCCTGGGCG
SPDEF	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	50	60	+	10.2364	6.91e-05	0.269	CCCCGGATGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	5	15	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	6	16	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	13	23	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	13	23	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	8	18	-	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	8	18	-	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	8	18	-	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	8	18	-	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	19	29	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	38	48	+	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	38	48	+	9.98182	6.91e-05	0.0207	CCGGCCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	38	48	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	38	48	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	38	48	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	57	67	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	57	67	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	57	67	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	57	67	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	57	67	+	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	48	58	-	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	67	77	-	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	86	96	-	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	99	109	-	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	100	110	-	9.98182	6.91e-05	0.0207	GCCCCTGCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	6	16	-	11.0163	6.91e-05	0.0237	CCGCCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	21	31	-	11.0163	6.91e-05	0.0237	CCGCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	71	81	-	11.0163	6.91e-05	0.0237	CCGCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	71	81	-	11.0163	6.91e-05	0.0237	CCGCCGCCCCC
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	5	18	+	6.2766	6.91e-05	0.1	AGCCCCACGCAGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	5	18	+	6.2766	6.91e-05	0.1	AGCCCCACGCAGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	5	18	+	6.2766	6.91e-05	0.1	AGCCCCACGCAGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	5	18	+	6.2766	6.91e-05	0.1	AGCCCCACGCAGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	5	18	+	6.2766	6.91e-05	0.1	AGCCCCACGCAGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	5	18	+	6.2766	6.91e-05	0.1	TGCCGCACGCGGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	97	110	-	6.2766	6.91e-05	0.1	TGCCGCACGCGGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	97	110	-	6.2766	6.91e-05	0.1	TGCCGCACGCGGTG
Creb5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	39	50	+	8.70909	6.91e-05	0.231	GGTGATGTCACT
Creb5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	83	94	+	8.70909	6.91e-05	0.231	GGTGATGTCACT
Creb5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	21	32	-	8.70909	6.91e-05	0.231	GGTGATGTCACT
Creb5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	65	76	-	8.70909	6.91e-05	0.231	GGTGATGTCACT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	60	70	-	10.4909	6.91e-05	0.223	GGCTGAGTCAG
MSC	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	22	+	10.3049	6.91e-05	0.569	GCCAGCTGGT
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	43	52	-	10.3049	6.91e-05	0.569	GCCAGCTGTG
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	43	52	-	10.3049	6.91e-05	0.569	GCCAGCTGTG
MSC	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	102	-	10.3049	6.91e-05	0.569	GCCAGCTGGT
MSC	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	106	-	10.3049	6.91e-05	0.569	GCCAGCTGGT
EGR3	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	33	47	-	6.31034	6.91e-05	0.0414	TGCCTCCTCCGCGCT
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	20	31	-	10.8429	6.91e-05	0.217	TGCGCCGACCGG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	35	46	+	10.8429	6.91e-05	0.217	TGCGCCGACCGG
ZBTB7A	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	84	95	+	10.8429	6.91e-05	0.217	TGCGCCGACCGG
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	23	34	+	11.11	6.91e-05	1	GAGATGCAAATT
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	23	34	+	11.11	6.91e-05	1	GAGATGCAAATT
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	28	39	-	11.11	6.91e-05	1	GAGATGCAAATT
TBX20	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	76	86	-	10.7273	6.92e-05	1	AGGGTGTGATC
ZBTB7B	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	54	65	-	10.5517	6.92e-05	0.365	AGGACCACCACC
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	67	78	-	10.5517	6.92e-05	0.365	TCGCCCCCCGGC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	50	61	+	10.5517	6.92e-05	0.365	AGGACCACCACC
MTF1	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	18	31	+	6.2561	6.92e-05	0.5	TTTGAACTCGTTCC
Gabpa	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	16	26	+	10.8689	6.92e-05	0.069	GCGGAAATGAG
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	8	22	-	11.0667	6.92e-05	1	GCGCGTCAGCAGTAA
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	8	22	-	11.0667	6.92e-05	1	GCGCGTCAGCAGTAA
MAFK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	8	22	-	11.0667	6.92e-05	1	GCGCGTCAGCAGTAA
MAFK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	8	22	-	11.0667	6.92e-05	1	GCGCGTCAGCAGTAA
CREB3L1	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	44	57	-	8.51515	6.92e-05	0.326	CTGCCACCTCGGCT
CREB3L1	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	58	71	+	8.51515	6.92e-05	0.326	CTGCCACCTCGGCT
NFIL3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	49	59	+	10.9394	6.92e-05	1	TTTCGTAACAT
NFIL3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	49	59	+	10.9394	6.92e-05	1	TTTCGTAACAT
NFIL3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	47	57	-	10.9394	6.92e-05	1	TTTCGTAACAT
NFIL3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	47	57	-	10.9394	6.92e-05	1	TTTCGTAACAT
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	19	29	+	11.3462	6.92e-05	0.401	TAAATGAATCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	27	37	-	11.3462	6.92e-05	0.401	AGTATGAATCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	90	100	-	11.3462	6.92e-05	0.401	TAAATGAATCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	100	110	+	11.3462	6.92e-05	0.401	TGGCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	100	110	+	11.3462	6.92e-05	0.401	TGGCTGACTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	100	110	+	11.3462	6.92e-05	0.401	TGGCTGACTCA
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	100	110	+	11.3462	6.92e-05	0.401	TGGCTGACTCA
SPIC	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	11	24	+	10.831	6.92e-05	0.277	CAGATGGGGAAGTG
SPIC	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	100	113	+	10.831	6.92e-05	0.277	TAAAAGCGGAAAAC
SPIC	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	2	15	-	10.831	6.92e-05	0.277	TAAAAGCGGAAAAC
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.0	3	16	-	10.831	6.92e-05	0.277	CAGATGGGGAAGTG
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.1	3	16	-	10.831	6.92e-05	0.277	CAGATGGGGAAGTG
SPIC	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	60	-	10.831	6.92e-05	0.277	AAGAACCGGAAGCC
SPIC	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	91	104	-	10.831	6.92e-05	0.277	CAGATGGGGAAGTG
EGR4	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	12	27	+	10.2182	6.92e-05	0.0398	CGCCGCCGCCGCAGTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	17	32	+	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	17	32	+	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	17	32	+	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	17	32	+	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	27	42	+	10.2182	6.92e-05	0.0398	CTCCGCCCACTCCGCA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	21	36	-	10.2182	6.92e-05	0.0398	TCCCGCCCCCTCGTCG
EGR4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	37	52	-	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	63	78	+	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	83	98	-	10.2182	6.92e-05	0.0398	GCCCGGCCACGCCACG
EGR4	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	88	103	-	10.2182	6.92e-05	0.0398	CGCCGCCGCCGCAGTC
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	37	48	-	0.269231	6.92e-05	0.932	TGGCATGTGTCC
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	55	66	+	0.269231	6.92e-05	0.932	TGGCATGTGTCC
RARA(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	3	19	-	3.13115	6.92e-05	0.563	GGGGCATGGTCGGGGCA
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	7	23	-	3.13115	6.92e-05	0.563	CGGTCCCGGTGGGGGCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	92	108	+	3.13115	6.92e-05	0.563	CGGTCCCGGTGGGGGCA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	92	108	+	3.13115	6.92e-05	0.563	CGGTCCCGGTGGGGGCA
STAT1	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	5	15	-	10.5455	6.92e-05	0.372	CCTCCAGGAAA
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	31	41	+	10.5455	6.92e-05	0.372	CCTCCAGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	31	41	+	10.5455	6.92e-05	0.372	CCTCCAGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	31	41	+	10.5455	6.92e-05	0.372	CCTCCAGGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	31	41	+	10.5455	6.92e-05	0.372	CCTCCAGGAAA
SP4	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	15	31	+	3.72727	6.92e-05	0.0305	CCGCCCCCTCCCCCTCC
SP4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	59	75	+	3.72727	6.92e-05	0.0305	CCGCCCCCTCCCCCTCC
NHLH1	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	10.7931	6.92e-05	0.138	AACAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	10.7931	6.92e-05	0.138	AACAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	10.7931	6.92e-05	0.138	AACAGCTGTG
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	91	102	-	8.11927	6.92e-05	0.855	TGACAACTGCCG
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	91	102	-	8.11927	6.92e-05	0.855	TGACAACTGCCG
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	13	24	+	8.11927	6.92e-05	0.855	TGACAACTGCCG
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	13	24	+	8.11927	6.92e-05	0.855	TGACAACTGCCG
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	47	56	-	10.449	6.92e-05	0.888	ATTATGCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	47	56	-	10.449	6.92e-05	0.888	ATTATGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	+	10.449	6.92e-05	0.888	CTTGCGTAAT
ZIC4	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	6	20	-	10.3091	6.93e-05	0.109	CCAGCCCCGCTGTGA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	49	63	-	10.3091	6.93e-05	0.109	ACCCACCTGCGGCTT
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	49	63	-	10.3091	6.93e-05	0.109	ACCCACCTGCGGCTT
ZIC4	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	55	69	-	10.3091	6.93e-05	0.109	CCCCCCCCCCCGCGA
ZIC4	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	76	90	-	10.3091	6.93e-05	0.109	TGCCCCCTTCTGCTC
ZIC4	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	79	93	-	10.3091	6.93e-05	0.109	CCAGCCCCGCTGTGA
ZIC4	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	90	104	-	10.3091	6.93e-05	0.109	CCCCCCCCCCCGCGA
ZIC4	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	25	+	10.3091	6.93e-05	0.109	CCCCCCCCCCCGCGA
ZIC4	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	22	36	+	10.3091	6.93e-05	0.109	CCAGCCCCGCTGTGA
ZIC4	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	60	+	10.3091	6.93e-05	0.109	CCCCCCCCCCCGCGA
ZIC4	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	95	109	+	10.3091	6.93e-05	0.109	CCAGCCCCGCTGTGA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	34	44	+	11.1346	6.93e-05	0.0758	CGCCCTGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	+	11.1346	6.93e-05	0.0758	TGCCCCAGGGT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	+	11.1346	6.93e-05	0.0758	TGCCCCAGGGT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	-	11.1346	6.93e-05	0.0758	TGCCCCAGGGT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	55	65	+	11.1346	6.93e-05	0.0758	AGCCCAGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	55	65	+	11.1346	6.93e-05	0.0758	AGCCCAGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	64	-	11.1346	6.93e-05	0.0758	CCCCGCAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	64	-	11.1346	6.93e-05	0.0758	CCCCGCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	64	-	11.1346	6.93e-05	0.0758	CCCCGCAGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	69	79	+	11.1346	6.93e-05	0.0758	AGCCCAGGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	65	75	-	11.1346	6.93e-05	0.0758	AGCCCAGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	79	-	11.1346	6.93e-05	0.0758	CCCCGCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	79	-	11.1346	6.93e-05	0.0758	CCCCGCAGGCT
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	32	43	-	10.7763	6.93e-05	0.0334	AACACGCCCCCG
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	56	67	+	10.7763	6.93e-05	0.0334	AACACGCCCCCG
EN2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	98	107	-	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	98	107	-	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	98	107	-	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	98	107	-	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	98	107	-	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	5	14	+	10.678	6.93e-05	1	CCCAATCAGG
EN2	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	19	28	+	10.678	6.93e-05	1	CCCAATCAGG
GLI2	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	6	17	+	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	27	38	+	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	37	48	+	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	54	65	+	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	45	56	-	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	45	56	-	10.3276	6.93e-05	0.33	CCGCCCACCCCG
GLI2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	67	78	-	10.3276	6.93e-05	0.33	CCGCCCACCCCG
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	78	88	-	11.5345	6.93e-05	0.902	TCGTGTTTTCT
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	78	88	-	11.5345	6.93e-05	0.902	TCGTGTTTTCT
ELF5	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	21	31	+	11.3455	6.93e-05	0.143	TTCCGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	81	91	+	11.3455	6.93e-05	0.143	TTCCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	81	91	+	11.3455	6.93e-05	0.143	TTCCGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	100	110	+	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	100	110	+	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	100	110	+	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	100	110	+	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	24	34	-	11.3455	6.93e-05	0.143	TTCCGGAAGTC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	51	61	-	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	51	61	-	11.3455	6.93e-05	0.143	AGGAGGAAGTC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	51	61	-	11.3455	6.93e-05	0.143	AGGAGGAAGTC
Bcl6	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	20	33	-	10.7419	6.93e-05	0.471	TTTCTTAGAGTGAC
Bcl6	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	20	33	-	10.7419	6.93e-05	0.471	TTTCTTAGAGTGAC
Bcl6	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	83	96	+	10.7419	6.93e-05	0.471	TTTCTTAGAGTGAC
TFCP2	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	25	34	-	11.1515	6.93e-05	1	GAACCGGCTT
ID4	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	91	100	-	11.9508	6.93e-05	0.389	CACACCTGGG
ID4	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	15	24	+	11.9508	6.93e-05	0.389	CACACCTGGG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	31	40	+	11.1379	6.93e-05	0.124	ACCGGATATG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	31	40	+	11.1379	6.93e-05	0.124	ACCGGATATG
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	3	18	+	-9.5	6.93e-05	0.329	TCGCCCCCCACCATGG
GLIS1	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	56	71	-	-9.5	6.93e-05	0.329	TCGCCCCCCACCATGG
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	3	12	-	11.5818	6.93e-05	0.729	CTTGTGCAAT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	3	12	-	11.5818	6.93e-05	0.729	CTTGTGCAAT
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	3	12	-	11.5818	6.93e-05	0.729	CTTGTGCAAT
E2F7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	35	48	-	-4.7377	6.93e-05	1	TCTTCCCGCCCGAT
E2F7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	35	48	-	-4.7377	6.93e-05	1	TCTTCCCGCCCGAT
E2F7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	35	48	-	-4.7377	6.93e-05	1	TCTTCCCGCCCGAT
E2F7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	35	48	-	-4.7377	6.93e-05	1	TCTTCCCGCCCGAT
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	50	61	+	2.55172	6.93e-05	0.298	CCACACGTGTTA
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	50	61	+	2.55172	6.93e-05	0.298	CCACACGTGTTA
HNF4G	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	5	19	-	10.7115	6.93e-05	0.341	CGGCGCCAAGGGCCA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	15	28	-	5.53061	6.93e-05	0.0725	GGGGCGGTGGGCGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	15	28	-	5.53061	6.93e-05	0.0725	GGGGCGGTGGGCGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	15	28	-	5.53061	6.93e-05	0.0725	GGGGCGGTGGGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	15	28	-	5.53061	6.93e-05	0.0725	GGGGCGGTGGGCGG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	29	43	+	8.22951	6.93e-05	0.0693	GCCCCCGCCCTCGCA
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	41	50	-	11.9344	6.93e-05	0.333	TACACGTGTG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	41	50	-	11.9344	6.93e-05	0.333	TACACGTGTG
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	41	50	-	11.9344	6.93e-05	0.333	TACACGTGTG
INSM1	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	11	22	-	9.81633	6.93e-05	0.186	TGTCAGGGCGCG
MAX	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	11.9615	6.93e-05	0.298	CGCACGTGCA
MAX	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	11.9615	6.93e-05	0.298	CGCACGTGCA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	5	21	+	9.73469	6.93e-05	0.368	GGAGCAGGGGCGGGGCA
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr5:63461626..63461740,+__1091.1.0.0	32	48	-	9.73469	6.93e-05	0.368	GGTTCGGCGAGACGGGA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	78	94	-	9.73469	6.93e-05	0.368	GGAGCAGGGGCGGGGCA
ELF3	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	102	114	+	8.2069	6.93e-05	0.168	AACACGGAAAAAA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	81	95	-	10.2424	6.93e-05	0.116	GTTTCGCGAGCGCCG
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	41	55	+	10.2424	6.93e-05	0.116	TCCTCGCGCTGCTCT
ESR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	52	68	+	-0.348485	6.93e-05	0.514	CAAGTCGCGGCGACCCA
TFAP2C	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	+	11.1531	6.93e-05	0.0866	CGCCGCCGGGCT
TFAP2C	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	-	11.1531	6.93e-05	0.0866	CGCCGCCGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	85	96	-	11.1531	6.93e-05	0.0866	CGCCCTGGGCCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	106	-	11.1531	6.93e-05	0.0866	CCCCCAAGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	106	-	11.1531	6.93e-05	0.0866	CCCCCAAGGGCG
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	70	88	-	10.5806	6.94e-05	0.674	GGGACTGATGTAACCTCTC
ETV4	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	8	17	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	9	18	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	9	18	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	13	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	15	24	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	18	27	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	27	36	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	28	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	29	38	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	38	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	55	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	60	69	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	61	70	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	61	70	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	65	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	77	86	+	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	86	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	88	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	97	-	11.431	6.94e-05	0.126	ACAGGAAGTG
ETV5	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	55	64	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	55	64	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	55	64	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	71	80	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	77	86	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	77	86	+	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	44	-	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	60	-	11.2545	6.94e-05	0.119	GGCGGAAGTC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	79	88	-	11.2545	6.94e-05	0.119	AGCGGATGCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	10	28	+	8.63934	6.94e-05	0.124	GGAGCGGAAGAGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	10	28	+	8.63934	6.94e-05	0.124	GGAGCGGAAGAGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	10	28	+	8.63934	6.94e-05	0.124	GGAGCGGAAGAGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	10	28	+	8.63934	6.94e-05	0.124	GGAGCGGAAGAGGGCGGGG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	10	28	+	8.63934	6.94e-05	0.124	GGAGCGGAAGAGGGCGGGG
CTCF	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	17	35	+	8.63934	6.94e-05	0.124	TGACCAGCAGAAAGCAAAC
CTCF	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	80	98	-	8.63934	6.94e-05	0.124	TGACCAGCAGAAAGCAAAC
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	33	-	11.2727	6.94e-05	0.0551	CCCCGGAGGCT
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	37	47	+	11.2727	6.94e-05	0.0551	CCCCGGAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	32	42	-	11.2727	6.94e-05	0.0551	CGCCTGCAGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	32	42	-	11.2727	6.94e-05	0.0551	CGCCTGCAGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	83	93	-	11.2727	6.94e-05	0.0551	CGCCTGCAGCG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	68	78	+	5.61224	6.94e-05	0.345	CCTGACTCACC
MNT	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	+	12.0909	6.94e-05	0.321	TCCACGTGGT
MNT	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	+	12.0909	6.94e-05	0.321	TCCACGTGGT
MNT	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	-	12.0909	6.94e-05	0.321	TCCACGTGGT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	4	17	-	0.80303	6.94e-05	0.221	CGGTGACGTAAGAT
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	4	17	-	0.80303	6.94e-05	0.221	CGGTGACGTAAGAT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	4	17	-	0.80303	6.94e-05	0.221	CGGTGACGTAAGAT
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	4	17	-	0.80303	6.94e-05	0.221	CGGTGACGTAAGAT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	4	17	-	0.80303	6.94e-05	0.221	CGGTGACGTAAGAT
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	59	76	-	10.7636	6.94e-05	1	CTTATCGATGAGGTGCAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	59	76	-	10.7636	6.94e-05	1	CTTATCGATGAGGTGCAC
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	26	39	+	8.72414	6.94e-05	0.0362	TCCTCCGCCCCCAT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	67	80	-	8.72414	6.94e-05	0.0362	TGACCCGCCTCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	67	80	-	8.72414	6.94e-05	0.0362	TGACCCGCCTCCAA
Klf1	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	26	36	-	10.7576	6.94e-05	0.0498	AACCCCTCCCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	+	10.2623	6.94e-05	0.0589	CGCCCCGTAGGCT
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	32	44	-	9.82759	6.94e-05	0.0554	CGCCCACAGGGGC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	50	62	+	9.82759	6.94e-05	0.0554	CGCCTGCGCGGCA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	53	65	-	9.82759	6.94e-05	0.0554	CGCCTGCGCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	68	80	+	9.82759	6.94e-05	0.0554	TCCCTGGCAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	68	80	+	9.82759	6.94e-05	0.0554	TCCCTGGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	68	80	+	9.82759	6.94e-05	0.0554	TCCCTGGCAGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	77	89	+	9.82759	6.94e-05	0.0554	CGCCCACAGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	+	9.82759	6.94e-05	0.0554	AGCCCTGCAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	+	9.82759	6.94e-05	0.0554	AGCCCTGCAGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	+	9.82759	6.94e-05	0.0554	GCCCTGCAGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	+	9.82759	6.94e-05	0.0554	GCCCTGCAGGGCG
KLF13	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	83	100	+	4.55172	6.94e-05	0.318	ATAACACGTCTCTTGATT
KLF13	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	15	32	-	4.55172	6.94e-05	0.318	ATAACACGTCTCTTGATT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	12	25	-	8.11475	6.94e-05	0.185	ACCCCCCCGGGGCC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	19	32	-	8.11475	6.94e-05	0.185	GCCCTCCCGCCAGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	19	32	-	8.11475	6.94e-05	0.185	GCCCTCCCGCCAGG
GLIS2	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	36	49	-	8.11475	6.94e-05	0.185	GCGCCCCCGCGGTC
GLIS2	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	66	79	+	8.11475	6.94e-05	0.185	GCGCCCCCGCGGTC
PAX1	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	10	26	+	5.49091	6.94e-05	0.619	CGTCATTCTTGAGCAAC
PAX1	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	91	107	-	5.49091	6.94e-05	0.619	CGTCATTCTTGAGCAAC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	73	87	-	10.3273	6.94e-05	0.324	AGGGAGAGAAAGCTG
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	31	45	+	9.5303	6.94e-05	0.318	AGAGTTCCACTTCCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	31	45	+	9.5303	6.94e-05	0.318	AGAGTTCCACTTCCT
STAT1::STAT2	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	70	84	-	9.5303	6.94e-05	0.318	AGAGTTCCACTTCCT
HOXB2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	9.77358	6.94e-05	1	AATAATTAGC
HOXB2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	9.77358	6.94e-05	1	ACTAATTAGA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	7	17	-	9.46552	6.95e-05	0.0855	ACTCCCATGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	7	17	-	9.46552	6.95e-05	0.0855	ACTCCCATGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	7	17	-	9.46552	6.95e-05	0.0855	ACTCCCATGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	7	17	-	9.46552	6.95e-05	0.0855	ACTCCCATGCA
ELF4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	46	57	+	9.03279	6.95e-05	0.113	CTGCCGGAAGCG
ELF4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	69	-	9.03279	6.95e-05	0.113	CTGCCGGAAGCG
JUND	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	+	10.4894	6.95e-05	0.23	GCTGAGTCACT
JUND	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	+	10.4894	6.95e-05	0.23	GCTGAGTCACT
JUND	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	-	10.4894	6.95e-05	0.23	GCTGAGTCACT
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	23	33	-	10.4894	6.95e-05	0.23	AATGATTCATT
JUND	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	-	10.4894	6.95e-05	0.23	GCTGAGTCACT
JUND	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	-	10.4894	6.95e-05	0.23	GCTGAGTCACT
JUND	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	104	114	+	10.4894	6.95e-05	0.23	AATGATTCATT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	52	66	+	6.2931	6.95e-05	0.0414	TCCCGCCCAGGCCGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	52	66	+	6.2931	6.95e-05	0.0414	TCCCGCCCAGGCCGG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	52	66	+	6.2931	6.95e-05	0.0414	TCCCGCCCAGGCCGG
EGR3	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	77	91	-	6.2931	6.95e-05	0.0414	GCACGCCCGCCCAGC
SOX21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	77	91	+	1.40816	6.95e-05	1	GATAATGCAAGTGTT
SOX21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	77	91	+	1.40816	6.95e-05	1	GATAATGCAAGTGTT
SOX21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	77	91	+	1.40816	6.95e-05	1	GATAATGCAAGTGTT
SOX21	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	77	91	+	1.40816	6.95e-05	1	GATAATGCAAGTGTT
EHF	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	21	32	+	10.1967	6.95e-05	0.135	ACACCGGAAGTC
EHF	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	24	35	+	10.1967	6.95e-05	0.135	TGGCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	25	36	+	10.1967	6.95e-05	0.135	ACACCGGAAGTC
EHF	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	35	46	+	10.1967	6.95e-05	0.135	TGGCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	56	67	+	10.1967	6.95e-05	0.135	ACACCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	56	67	+	10.1967	6.95e-05	0.135	ACACCGGAAGTC
EHF	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	69	80	-	10.1967	6.95e-05	0.135	TGGCCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	80	91	-	10.1967	6.95e-05	0.135	TGGCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	80	91	-	10.1967	6.95e-05	0.135	TGGCCGGAAGTC
Sox11	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	32	46	+	-13.6714	6.95e-05	1	AAAAATTTCAGTAGT
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	72	86	-	10.8018	6.95e-05	0.188	GTGAGACAAAGGCCG
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	27	41	-	8.04286	6.95e-05	0.117	TCCCTCCTCCAGCGC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	44	58	+	8.04286	6.95e-05	0.117	TCCCTCCTCCAGCGC
CDX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	29	39	+	11.6949	6.95e-05	1	GTGCAATAAAT
CDX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	29	39	+	11.6949	6.95e-05	1	GTGCAATAAAT
Esrra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	89	99	+	7.34545	6.95e-05	0.992	TCCAAGGGCAC
Esrra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	89	99	+	7.34545	6.95e-05	0.992	TCCAAGGGCAC
JUNB	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	48	58	+	11.0816	6.95e-05	0.224	CAATGACTCAA
NFYB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	9	23	+	10.5577	6.95e-05	0.186	TGTAGAACCAATCGG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	9	23	+	10.5577	6.95e-05	0.186	TGTAGAACCAATCGG
NFYB	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	92	106	-	10.5577	6.95e-05	0.186	TGTAGAACCAATCGG
MYF6	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	16	25	+	10.4848	6.95e-05	1	CACAACTGTC
MYF6	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	104	113	-	10.4848	6.95e-05	1	CACAACTGTC
Pou5f1::Sox2	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	68	82	+	10.4032	6.95e-05	1	CTTTTTCTTGCAGAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	35	52	-	-14.5789	6.95e-05	0.0538	TGAGGCAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	35	52	-	-14.5789	6.95e-05	0.0538	TGAGGCAGGGCAGGAGGC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	78	95	-	-14.5789	6.95e-05	0.0538	GGGAGGCGGGGCGGAGAG
RXRB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	42	55	+	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	42	55	+	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	42	55	+	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	42	55	+	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	42	55	+	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
RXRB	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	60	73	-	0.581818	6.95e-05	0.538	GCGGGCGAAGGTCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	-	9.95082	6.95e-05	0.0644	GCCCCGCCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	-	9.95082	6.95e-05	0.0644	GCCCCGCCGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	-	9.95082	6.95e-05	0.0644	GCCCCGCCGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	-	9.95082	6.95e-05	0.0644	GCCCCGCCGGGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	26	36	-	10.8525	6.95e-05	0.069	GCGGAAGAGAG
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	21	31	-	11.1034	6.95e-05	0.0711	GGGAGGGAATT
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	21	31	-	11.1034	6.95e-05	0.0711	GGGAGGGAATT
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	7	22	-	-9.51923	6.95e-05	0.329	AGGCCTCCCACGAAAC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	7	22	-	-9.51923	6.95e-05	0.329	AGGCCTCCCACGAAAC
GLIS1	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	93	108	+	-9.51923	6.95e-05	0.329	AGGCCTCCCACGAAAC
PAX5	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	24	42	+	10.4839	6.95e-05	0.15	TCGGGTAACGATGCGGGGC
PAX5	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	64	82	+	10.4839	6.95e-05	0.15	GTGCGCGGTAGAGCGCGCC
PAX5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	75	93	+	10.4839	6.95e-05	0.15	CTACGCCACAGAGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	22	40	-	10.4839	6.95e-05	0.15	CTACGCCACAGAGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	22	40	-	10.4839	6.95e-05	0.15	CTACGCCACAGAGCGGGGC
PAX5	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	73	91	-	10.4839	6.95e-05	0.15	TCGGGTAACGATGCGGGGC
MLX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	-	10.0286	6.95e-05	0.301	ATCACGTGGG
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	-	10.0286	6.95e-05	0.301	ATCACGTGGG
MLX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	-	10.0286	6.95e-05	0.301	ATCACGTGGG
MLX	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	-	10.0286	6.95e-05	0.301	ATCACGTGGG
MLX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	-	10.0286	6.95e-05	0.301	ATCACGTGGG
Pax6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.0.0	88	101	+	10.5667	6.95e-05	1	TTCAGGGATCATTT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.1.0	88	101	+	10.5667	6.95e-05	1	TTCAGGGATCATTT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.2.0	88	101	+	10.5667	6.95e-05	1	TTCAGGGATCATTT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.0	88	101	+	10.5667	6.95e-05	1	TTCAGGGATCATTT
Pax6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.1	88	101	+	10.5667	6.95e-05	1	TTCAGGGATCATTT
ELF1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	20	31	-	8.94545	6.95e-05	0.123	AACGAGGAAATG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	69	80	+	8.94545	6.95e-05	0.123	AATCAGGAAATG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	21	32	+	10.6515	6.95e-05	0.109	CCAGGTCCGTGG
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	22	-	12.1224	6.95e-05	0.422	CCCACCTGTT
TCF4	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	58	-	12.1224	6.95e-05	0.422	CCCACCTGTT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	50	59	-	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	12	21	+	11.0161	6.96e-05	1	TATTTCCATT
Hic1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	31	39	+	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	31	39	+	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	31	39	+	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	87	95	+	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	22	30	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	22	30	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	22	30	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	22	30	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	103	111	-	11.2115	6.96e-05	0.516	CTGCCAACC
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	103	111	-	11.2115	6.96e-05	0.516	CTGCCAACC
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	103	111	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	103	111	-	11.2115	6.96e-05	0.516	GTGCCACCG
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	103	111	-	11.2115	6.96e-05	0.516	CTGCCAACC
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	103	111	-	11.2115	6.96e-05	0.516	CTGCCAACC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	103	111	-	11.2115	6.96e-05	0.516	CTGCCAACC
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	37	53	+	5.12245	6.96e-05	1	CGGGACGTTTCGTCCTC
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	37	53	+	5.12245	6.96e-05	1	CGGGACGTTTCGTCCTC
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	58	72	-	10.3846	6.96e-05	0.848	CCCGCACTCGCCGCA
CENPB	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	85	99	-	10.3846	6.96e-05	0.848	CCCGCACTCGCCGCA
Klf4	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	107	+	10.6837	6.96e-05	0.0247	AGGGTGTGAC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	11	20	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	11	20	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	11	20	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	11	20	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	23	32	+	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	50	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.1064	6.96e-05	0.12	CCCGGAAGCG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	62	71	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	62	71	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	83	92	-	11.1064	6.96e-05	0.12	CCCGGAAGTC
FLI1	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	95	104	+	11.1064	6.96e-05	0.12	CCCGGAAGTC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	30	42	-	8.15152	6.96e-05	0.264	TGGGAACCCCCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	30	42	-	8.15152	6.96e-05	0.264	TGGGAACCCCCCC
GSC2	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	9	18	-	10.661	6.96e-05	1	CATAATCCCT
TFEB	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	7	16	+	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	26	35	+	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	29	38	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	30	39	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	28	37	-	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	31	40	-	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	34	43	-	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	46	55	-	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	46	55	-	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	70	79	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	70	79	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	75	84	+	11.1731	6.96e-05	0.167	CTCATGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	97	106	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	97	106	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	97	106	+	11.1731	6.96e-05	0.167	AGCATGTGAC
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	97	106	+	11.1731	6.96e-05	0.167	AGCATGTGAC
RXRG	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	42	55	+	1.65957	6.96e-05	0.48	AGGGGCAGGGGTGA
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	52	65	+	1.65957	6.96e-05	0.48	GAGGTCGAGTGTCA
RXRG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	52	65	+	1.65957	6.96e-05	0.48	GAGGTCGAGTGTCA
RXRG	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	93	106	+	1.65957	6.96e-05	0.48	AGGGGCAGGGGTGA
RXRG	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	9	22	-	1.65957	6.96e-05	0.48	AGGGGCAGGGGTGA
RXRG	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	50	63	-	1.65957	6.96e-05	0.48	GAGGTCGAGTGTCA
RXRG	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	60	73	-	1.65957	6.96e-05	0.48	AGGGGCAGGGGTGA
Nr2f6(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	32	46	-	-5.71429	6.96e-05	0.998	GAGGGCATGAGGGCG
ZBTB7B	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	52	63	-	10.5345	6.96e-05	0.365	GGGACCCCCACC
ZBTB7B	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	103	114	-	10.5345	6.96e-05	0.365	GGGACCCCCACC
ZBTB7B	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	1	12	+	10.5345	6.96e-05	0.365	GGGACCCCCACC
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	52	63	+	10.5345	6.96e-05	0.365	GGGACCCCCACC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	88	100	-	10.7377	6.96e-05	0.359	GTGACTGGCACGT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	18	30	+	10.7377	6.96e-05	0.359	CCCTCTGGCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	18	30	+	10.7377	6.96e-05	0.359	CCCTCTGGCACCT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	-	9.50909	6.96e-05	0.254	CTCGCGTGAC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	66	83	+	-14.5921	6.96e-05	0.0538	AGAGGGGGGGCGGGAGGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	32	49	-	-14.5921	6.96e-05	0.0538	AGAGGGGGGGCGGGAGGG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	35	48	-	6.25532	6.96e-05	0.101	TCCCACCTGTAGGG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	57	68	-	11.1818	6.96e-05	0.0924	CGCCCTCAGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	57	68	-	11.1818	6.96e-05	0.0924	CGCCCTCAGCCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	57	68	-	11.1818	6.96e-05	0.0924	CGCCCTCAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	57	68	-	11.1818	6.96e-05	0.0924	CGCCCTCAGCCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	3	16	+	5.52041	6.96e-05	0.0725	GGGGGCGAGTGCGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.1	3	16	+	5.52041	6.96e-05	0.0725	GGGGGCGAGTGCGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.0.0	3	16	+	5.52041	6.96e-05	0.0725	GGGGGCGAGTGCGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.2.0	3	16	+	5.52041	6.96e-05	0.0725	GGGGGCGAGTGCGG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	19	32	-	10.7273	6.96e-05	0.0634	CCAGGCCTGGCCTT
Myb	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	6	15	+	11.3115	6.97e-05	0.905	CTAGCTGTCA
Myb	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	24	33	+	11.3115	6.97e-05	0.905	CTAGCTGTCA
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	29	43	+	10.3448	6.97e-05	0.0153	CCTCCTCCTCCTCTT
SP2	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	38	52	+	10.3448	6.97e-05	0.0153	CCTCCTCCTTTCCCC
SP2	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	37	51	-	10.3448	6.97e-05	0.0153	CCCCTGCCTCCTCTT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	49	63	-	10.3448	6.97e-05	0.0153	TCTCCGCCCTCGACA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	49	63	-	10.3448	6.97e-05	0.0153	TCTCCGCCCTCGACA
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	64	78	+	10.3448	6.97e-05	0.0153	CCCCTGCCTCCTCTT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	64	78	+	10.3448	6.97e-05	0.0153	CCCCTGCCTCCTCTT
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	70	84	+	10.3448	6.97e-05	0.0153	CCTCCTCCTCCTCTT
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	70	84	+	10.3448	6.97e-05	0.0153	CCTCCTCCTCCTCTT
SP2	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	63	77	-	10.3448	6.97e-05	0.0153	CCTCCTCCTTTCCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	73	87	-	10.3448	6.97e-05	0.0153	GGTCCTCCTCCACAC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	73	87	-	10.3448	6.97e-05	0.0153	GGTCCTCCTCCACAC
TGIF2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	-	8.11009	6.97e-05	0.855	GGACACATGTCA
TGIF2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	+	8.11009	6.97e-05	0.855	GGACACATGTCA
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	66	79	+	11.1346	6.97e-05	0.223	CCCAAGTGAGTCAG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	67	80	+	11.1346	6.97e-05	0.223	CCCAAGTGAGTCAG
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	35	48	-	11.1346	6.97e-05	0.223	CCCAAGTGAGTCAG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	36	49	-	11.1346	6.97e-05	0.223	CCCAAGTGAGTCAG
PKNOX2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	26	37	+	2.93443	6.97e-05	0.598	TGTCTGATGTCA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	29	42	-	10.2115	6.97e-05	0.0258	CTCCCTCCTACAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	43	56	+	10.2115	6.97e-05	0.0258	CTCCCTCCTACAGC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:173793436..173793550,-__959.1.0.0	31	44	-	10.2115	6.97e-05	0.0258	CCGCCGCCTCTTCA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	35	48	-	10.2115	6.97e-05	0.0258	CCTCAGCCCACACT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	35	48	-	10.2115	6.97e-05	0.0258	CCTCAGCCCACACT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	35	48	-	10.2115	6.97e-05	0.0258	CCTCAGCCCACACT
EGR1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	59	72	-	10.2115	6.97e-05	0.0258	CTCCCTCCTACAGC
EGR1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	73	86	+	10.2115	6.97e-05	0.0258	CTCCCTCCTACAGC
IRF9	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	71	85	-	-2.72727	6.97e-05	0.654	CAGGAGACCGAAACC
Spz1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	93	103	+	11.2273	6.97e-05	0.77	GGAGTTGCAGC
BATF3	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	67	80	-	0.787879	6.97e-05	0.221	TGATGGCGTCACGG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	3	13	+	10.3934	6.97e-05	0.179	GACAGGAAACT
ETV2	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	38	48	+	10.3934	6.97e-05	0.179	ACCCGGAAACA
ETV2	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	67	77	-	10.3934	6.97e-05	0.179	ACCCGGAAACA
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	93	103	-	10.3934	6.97e-05	0.179	GACAGGAAACT
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	95	110	+	1.32759	6.97e-05	0.4	GTACCATCATCCAGTG
Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	38	51	+	2.93902	6.97e-05	0.493	GAGGGGAAAGGTAA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	38	51	+	2.93902	6.97e-05	0.493	GAGGGGAAAGGTAA
Rxra	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	64	77	-	2.93902	6.97e-05	0.493	GAGGGGAAAGGTAA
Sox1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	16	30	-	3.32759	6.97e-05	1	CACACTCCTATTGTG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	5	16	-	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	5	16	-	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	5	16	-	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	5	16	-	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	23	34	+	11.2182	6.97e-05	0.0577	GGCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	23	34	-	11.2182	6.97e-05	0.0577	GGCCCGCGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	28	39	-	11.2182	6.97e-05	0.0577	CCCCCCCCGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	40	51	+	11.2182	6.97e-05	0.0577	CCGCCCAGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	40	51	+	11.2182	6.97e-05	0.0577	CCGCCCAGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	41	52	+	11.2182	6.97e-05	0.0577	CCCCCGCAGGGA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	39	50	-	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	40	51	-	11.2182	6.97e-05	0.0577	ACCCCCCAGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	65	76	+	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	65	76	+	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	65	76	+	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	81	92	+	11.2182	6.97e-05	0.0577	GGCCCGCGGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	81	92	-	11.2182	6.97e-05	0.0577	GGCCCGCGGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	99	110	+	11.2182	6.97e-05	0.0577	CGCCGCCAGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	15	25	+	11.0182	6.97e-05	0.0702	AGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	32	42	+	11.0182	6.97e-05	0.0702	CGCCTCCGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	32	42	+	11.0182	6.97e-05	0.0702	CGCCTCCGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	60	70	+	11.0182	6.97e-05	0.0702	AGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	60	70	+	11.0182	6.97e-05	0.0702	AGCCGCCGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	45	55	-	11.0182	6.97e-05	0.0702	AGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	64	74	-	11.0182	6.97e-05	0.0702	CGCCGAAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	64	74	-	11.0182	6.97e-05	0.0702	CGCCGAAGGCC
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	31	44	-	3.68182	6.97e-05	0.379	GACCACCCACTTCT
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	62	75	+	3.68182	6.97e-05	0.379	GACCACCCACTTCT
SP1	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	30	40	-	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	46	56	+	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	49	59	+	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	56	66	-	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	59	69	-	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	75	85	+	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	76	86	+	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	76	86	+	10.8462	6.97e-05	0.0174	CGCCCTCCCCG
CLOCK	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	11.2576	6.97e-05	0.585	CCCACGTGTC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	11.2576	6.97e-05	0.585	CCCACGTGTC
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	11.2576	6.97e-05	0.585	AGCACGTGGA
CLOCK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	11.2576	6.97e-05	0.585	AGCACGTGGA
CLOCK	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	11.2576	6.97e-05	0.585	CCCACGTGTC
NEUROG2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	93	102	+	9.78788	6.97e-05	1	AACAGATGCT
NEUROG2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	93	102	+	9.78788	6.97e-05	1	AACAGATGCT
NEUROG2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	93	102	+	9.78788	6.97e-05	1	AACAGATGCT
NEUROG2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	93	102	+	9.78788	6.97e-05	1	AACAGATGCT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	82	99	+	-14.6053	6.97e-05	0.0538	GGCGGGAGGGGTGGAGAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	16	33	-	-14.6053	6.97e-05	0.0538	GGCGGGAGGGGTGGAGAG
TEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	73	-	10.6	6.97e-05	1	TGTGACGTAACA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	32	45	-	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	32	45	-	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	88	101	-	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	14	27	+	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	14	27	+	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	34	47	+	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	34	47	+	9.65714	6.97e-05	0.271	CCGTGACGTCACAA
NHLH1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	11	20	+	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	36	+	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	28	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	53	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	53	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	53	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	53	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	77	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	88	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	88	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
NHLH1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	104	-	10.7759	6.97e-05	0.138	GCCAGCTGCG
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	25	39	-	8.57377	6.98e-05	0.477	GTGACTCAGGCTGTT
SREBF1	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	78	87	-	11.2195	6.98e-05	0.472	GTCACACCAG
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	99	108	-	11.2195	6.98e-05	0.472	GTCACACCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	99	108	-	11.2195	6.98e-05	0.472	GTCACACCAG
SREBF1	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	7	16	+	11.2195	6.98e-05	0.472	GTCACACCAG
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	28	37	+	11.2195	6.98e-05	0.472	GTCACACCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	28	37	+	11.2195	6.98e-05	0.472	GTCACACCAG
Ascl2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	47	56	+	10.9	6.98e-05	0.239	GGCACCTGCC
PAX9	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	3	19	+	0.345455	6.98e-05	0.501	AGTCACGGCCGAGTCAT
PAX9	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	8	24	+	0.345455	6.98e-05	0.501	AGTCACGGCCGAGTCAT
PAX9	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	91	107	-	0.345455	6.98e-05	0.501	AGTCACGGCCGAGTCAT
PAX9	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	96	112	-	0.345455	6.98e-05	0.501	AGTCACGGCCGAGTCAT
ERF	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11	6.98e-05	0.111	ACCGGAAGGT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	57	71	-	9.3	6.98e-05	0.122	GTGGGTTAGAGTCCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	57	71	-	9.3	6.98e-05	0.122	GTGGGTTAGAGTCCA
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	+	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	+	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	-	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	-	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	+	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	+	9.96552	6.98e-05	0.249	ATCACATGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	-	9.96552	6.98e-05	0.249	ATCACATGAC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	21	41	-	9.57143	6.98e-05	0.0201	GGGGATTGAATGGAGGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	34	54	-	9.57143	6.98e-05	0.0201	GAAGAAGGCTGGGTGTGGGAA
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	91	111	-	9.57143	6.98e-05	0.0201	TGAGGAGAGAGGGTTGTAGAG
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	91	111	-	9.57143	6.98e-05	0.0201	TGAGGAGAGAGGGTTGTAGAG
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	91	111	-	9.57143	6.98e-05	0.0201	TGAGGAGAGAGGGTTGTAGAG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	91	111	-	9.57143	6.98e-05	0.0201	TGAGGAGAGAGGGTTGTAGAG
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	4	24	+	9.57143	6.98e-05	0.0201	TGAGGAGAGAGGGTTGTAGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	36	56	+	9.57143	6.98e-05	0.0201	GGTGGAGCCTGAGCGAGGAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	68	88	+	9.57143	6.98e-05	0.0201	AGAGGAGGCGTGAGAGAGCGT
Twist2	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	28	37	+	11.7541	6.98e-05	1	CCCATGTGTC
SPDEF	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	91	101	+	10.2182	6.98e-05	0.269	TCCCGGAAGCT
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	24	-	10.2182	6.98e-05	0.269	TCCCGGAAGCT
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	24	-	10.2182	6.98e-05	0.269	TCCCGGAAGCT
GLI2	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	4	15	-	10.3103	6.98e-05	0.33	GCGCCCCCACAG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	28	39	+	10.3103	6.98e-05	0.33	GCGACGACGCAG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	28	39	+	10.3103	6.98e-05	0.33	GCGACGACGCAG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	51	67	+	-0.378788	6.98e-05	0.514	TCGGGCACGGTGACAGA
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	51	67	+	-0.378788	6.98e-05	0.514	TCGGGCACGGTGACAGA
ESR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	51	67	+	-0.378788	6.98e-05	0.514	TCGGGCACGGTGACAGA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	51	67	+	-0.378788	6.98e-05	0.514	TCGGGCACGGTGACAGA
ESR1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	48	64	-	-0.378788	6.98e-05	0.514	TCGGGCACGGTGACAGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	72	84	+	8.18966	6.98e-05	0.169	AATCAGGAAGTCG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	72	84	+	8.18966	6.98e-05	0.169	AATCAGGAAGTCG
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	36	50	+	10.3952	6.98e-05	1	TTTTGAAATTCAGAC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	26	43	+	-14.6184	6.98e-05	0.0538	GGAGGAGAAGGAGGCGGC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	45	55	-	9.96364	6.98e-05	0.0209	ACGGAGGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	58	68	+	9.96364	6.98e-05	0.0209	ACGGAGGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	58	68	+	9.96364	6.98e-05	0.0209	GCGCTTGCGAG
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	27	41	-	10.2273	6.98e-05	0.116	ATCTCATGAGACTTG
Sox3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	7	16	-	11.5172	6.98e-05	0.659	GCTTTGTGTT
Sox3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	7	16	-	11.5172	6.98e-05	0.659	GCTTTGTGTT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	6	20	+	6.27586	6.98e-05	0.0414	GCCCGGCCCCGCCTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	6	20	+	6.27586	6.98e-05	0.0414	GCCCGGCCCCGCCTT
EGR3	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	1	15	-	6.27586	6.98e-05	0.0414	GCCCGGCCCCGCCTT
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	33	-	6.27586	6.98e-05	0.0414	CTGCGCCCACGTGTC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	62	76	+	6.27586	6.98e-05	0.0414	CTTCGCCCCGGCAAG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	62	76	+	6.27586	6.98e-05	0.0414	CTTCGCCCCGGCAAG
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	100	114	+	6.27586	6.98e-05	0.0414	GCCCGGCCCCGCCTT
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	95	109	-	6.27586	6.98e-05	0.0414	GCCCGGCCCCGCCTT
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	72	83	-	2.53448	6.98e-05	0.298	AGGCACGTGACT
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	72	83	-	2.53448	6.98e-05	0.298	AGGCACGTGACT
HOXD12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	27	37	-	10.8197	6.98e-05	1	GCTCGTAAAGA
HOXD12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	47	57	-	10.8197	6.98e-05	1	GCTCGTAAAGA
HOXD12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	75	85	-	10.8197	6.98e-05	1	GCTCGTAAAGA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	28	46	+	8.62295	6.99e-05	0.124	CCGCCCTCAGGTGGCATCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	28	46	+	8.62295	6.99e-05	0.124	CCGCCCTCAGGTGGCATCA
CTCF	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	37	55	+	8.62295	6.99e-05	0.124	GGGCCAGTAAGGGCCGCTC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	79	97	-	8.62295	6.99e-05	0.124	CGGCCGGCGGGAGGAAATA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	79	97	-	8.62295	6.99e-05	0.124	CGGCCGGCGGGAGGAAATA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	81	99	-	8.62295	6.99e-05	0.124	AGCCCAGCAGGGGAAGAAC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	81	99	-	8.62295	6.99e-05	0.124	AGCCCAGCAGGGGAAGAAC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	12	26	+	8.02857	6.99e-05	0.117	CACTTCCTGCTGGGG
KLF14	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	36	49	+	8.7069	6.99e-05	0.0364	GGCCCCGCCCTCGG
FOXP1	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	69	83	+	10.9859	6.99e-05	0.341	AAAAAAAAAACACCA
FOXP1	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	32	46	-	10.9859	6.99e-05	0.341	AAAAAAAAAACACCA
NFATC1	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	3	12	+	10.4878	6.99e-05	0.956	ACTTTCCGCT
NFATC1	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	1	10	-	10.4878	6.99e-05	0.956	ACTTTCCGCT
NFATC1	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	105	114	+	10.4878	6.99e-05	0.956	ACTTTCCGCT
NFATC1	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	103	112	-	10.4878	6.99e-05	0.956	ACTTTCCGCT
SRY	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	24	32	-	10.8889	6.99e-05	1	GTAAACAAA
SRY	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	24	32	-	10.8889	6.99e-05	1	GTAAACAAA
SRY	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	56	64	-	10.8889	6.99e-05	1	GTAAACAAA
SRY	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	86	94	-	10.8889	6.99e-05	1	GTAAACAAA
SRY	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	29	+	10.8889	6.99e-05	1	GTAAACAAA
SRY	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	91	+	10.8889	6.99e-05	1	GTAAACAAA
SRY	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	91	+	10.8889	6.99e-05	1	GTAAACAAA
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	24	36	-	9.81034	6.99e-05	0.0554	TGCCGCGGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	+	9.81034	6.99e-05	0.0554	CGCCCGTGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	+	9.81034	6.99e-05	0.0554	CGCCCGTGCGGCT
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	79	91	+	9.81034	6.99e-05	0.0554	TGCCGCGGCGGCG
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	6	15	-	11.8197	6.99e-05	0.389	AGCACCTGGG
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	6	15	-	11.8197	6.99e-05	0.389	AGCACCTGGG
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.0.0	45	54	-	11.8197	6.99e-05	0.389	AGCACCTGGG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	66	80	+	10.7928	6.99e-05	0.188	AGAGGGCAAAGGGTC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	66	80	+	10.7928	6.99e-05	0.188	AGAGGGCAAAGGGTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	27	41	-	10.2909	6.99e-05	0.109	TCCCTCCTACAGCGC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	41	55	-	10.2909	6.99e-05	0.109	TCCTCCCTGCGGGGG
ZIC4	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	57	71	-	10.2909	6.99e-05	0.109	TCCCTCCTACAGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	44	58	+	10.2909	6.99e-05	0.109	TCCCTCCTACAGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	74	88	+	10.2909	6.99e-05	0.109	TCCCTCCTACAGCGC
ONECUT3	WILDTYPE__Enhancer.flip.sense__chr17:9688051..9688165,+__1774.1.0.0	44	57	+	9.40449	6.99e-05	1	AGATAATCAAAAAC
ONECUT3	FLIPPED__Enhancer.flip.antisense__chr17:9688051..9688165,-__2831.1.0.0	58	71	-	9.40449	6.99e-05	1	AGATAATCAAAAAC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	15	30	+	10.2	6.99e-05	0.0398	CCACGCCCCCACCCCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	15	30	+	10.2	6.99e-05	0.0398	CCACGCCCCCACCCCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	27	42	+	10.2	6.99e-05	0.0398	CTCCGCCCACTCGGCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	27	42	+	10.2	6.99e-05	0.0398	CTCCGCCCACTCGGCA
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	28	43	+	10.2	6.99e-05	0.0398	GCAGGCCCGCCCACTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	28	43	+	10.2	6.99e-05	0.0398	GCAGGCCCGCCCACTC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	23	38	-	10.2	6.99e-05	0.0398	CTCCGCCCCCTCCACA
EGR4	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	32	47	-	10.2	6.99e-05	0.0398	CCCCGTCCCCGCGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	52	67	-	10.2	6.99e-05	0.0398	TGGCGCCCCCGCCTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	52	67	-	10.2	6.99e-05	0.0398	TGGCGCCCCCGCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	52	67	-	10.2	6.99e-05	0.0398	TGGCGCCCCCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	52	67	-	10.2	6.99e-05	0.0398	TGGCGCCCCCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	68	83	+	10.2	6.99e-05	0.0398	CCCCGTCCCCGCGCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	68	83	+	10.2	6.99e-05	0.0398	CCCCGTCCCCGCGCCT
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	10	20	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	10	20	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	37	47	+	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	68	78	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	68	78	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	68	78	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	68	78	-	10.8361	6.99e-05	0.069	CCGGAAGCCTG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	89	99	+	10.8361	6.99e-05	0.069	CCGGAAGCCTG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	14	25	-	10.8286	6.99e-05	0.217	CGCGCCGACCGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	53	64	-	10.8286	6.99e-05	0.217	CGCGCCGACCGG
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	51	62	+	10.8286	6.99e-05	0.217	CGCGCCGACCGG
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	19	29	+	11.3878	6.99e-05	0.381	CCTCCCAAGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	19	29	+	11.3878	6.99e-05	0.381	CCTCCCAAGAA
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	82	92	-	11.5172	6.99e-05	0.902	ATTTGTTTACT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.3636	6.99e-05	0.118	TCCGGAAGCT
ETV1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.3636	6.99e-05	0.118	TCCGGAAGCT
SP4	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	21	37	-	3.69091	6.99e-05	0.0307	CCAGATCCGCCTCCATC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	26	42	-	3.69091	6.99e-05	0.0307	CACTCCACTCCCCCACG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	52	68	+	3.69091	6.99e-05	0.0307	CCCGCCCCCCCCCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	66	82	+	3.69091	6.99e-05	0.0307	CTCTCCCCTCCCCCATC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	66	82	+	3.69091	6.99e-05	0.0307	CTCTCCCCTCCCCCATC
SP4	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	78	94	+	3.69091	6.99e-05	0.0307	CCAGATCCGCCTCCATC
IRF9	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	77	91	+	-2.74545	6.99e-05	0.654	TTGGAAAACGAAAAC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	71	88	-	-14.6316	6.99e-05	0.0538	GGGAGGAGCCCAGTCAGG
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	48	57	-	11.3333	6.99e-05	1	CTAATAAAGC
REST	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	5	25	-	5.03061	6.99e-05	0.227	CTCAGGGGCGGGGAGAGAGAC
REST	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	90	110	+	5.03061	6.99e-05	0.227	CTCAGGGGCGGGGAGAGAGAC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	25	37	-	2.04082	7e-05	0.253	TGGGATTTCCCCA
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	65	77	-	2.04082	7e-05	0.253	TGGGGGACCCCTG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	90	+	2.04082	7e-05	0.253	TGGGATTTCCCCA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr12:76653539..76653653,+__256.1.0.0	14	28	+	10.5106	7e-05	0.333	ATTGATGATGTGATA
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	68	82	+	10.5106	7e-05	0.333	GAGAGTGATGCCAGG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	68	82	+	10.5106	7e-05	0.333	GAGAGTGATGCCAGG
TFE3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	52	61	-	11.102	7e-05	0.147	CCCACGTGAA
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	52	61	-	11.102	7e-05	0.147	CCCACGTGAA
TFE3	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	-	11.102	7e-05	0.147	TACACGTGAC
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	+	11.4038	7e-05	0.141	AACGGAAATA
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	+	11.4038	7e-05	0.141	AACGGAAATA
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	-	11.4038	7e-05	0.141	AACGGAAATA
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	-	11.4038	7e-05	0.141	AACGGAAATA
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	11.4038	7e-05	0.141	ACCGGAACTA
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	11.4038	7e-05	0.141	ACCGGAACTA
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	91	108	+	10.8222	7e-05	0.965	GCTATTTCATCAGTTCTT
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	91	108	+	10.8222	7e-05	0.965	GCTATTTCATCAGTTCTT
MAFF	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	7	24	-	10.8222	7e-05	0.965	GCTATTTCATCAGTTCTT
Nr5a2	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	1	15	-	10.1207	7e-05	0.504	GGAGCCAAGGTCCGC
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	100	114	+	10.1207	7e-05	0.504	GGAGCCAAGGTCCGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	100	114	+	10.1207	7e-05	0.504	GGAGCCAAGGTCCGC
SP3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	69	79	+	11.0081	7e-05	0.0239	GTCCCACCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	92	102	+	11.0081	7e-05	0.0239	GCCAGGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	95	105	+	11.0081	7e-05	0.0239	TGCACGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	11	21	-	11.0081	7e-05	0.0239	GTCCCACCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	13	23	-	11.0081	7e-05	0.0239	GCCAGGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	36	46	-	11.0081	7e-05	0.0239	GTCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	36	46	-	11.0081	7e-05	0.0239	GTCCCACCCCC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	68	78	-	11.0862	7e-05	0.0714	AAGCGGGAACT
HOXD13	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	45	54	-	11.2698	7e-05	1	CTTATAAAAC
HOXD13	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	48	57	-	11.2698	7e-05	1	CTTATAAAAC
HOXD13	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	49	58	-	11.2698	7e-05	1	CTTATAAAAC
HOXD13	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	50	59	-	11.2698	7e-05	1	CTTATAAAAC
HOXD13	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	61	70	+	11.2698	7e-05	1	CTTATAAAAC
Znf423	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	1	15	+	5.78652	7e-05	0.339	AGCCCCCTTGGTCCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	+	10.2459	7e-05	0.0589	AGCCTCAGGGGGT
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	9	21	+	10.2459	7e-05	0.0589	GGCCCGACAGGCA
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	53	65	+	10.2459	7e-05	0.0589	GGCCCGACAGGCA
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	50	62	-	10.2459	7e-05	0.0589	GGCCCGACAGGCA
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	94	106	-	10.2459	7e-05	0.0589	GGCCCGACAGGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	-	10.2459	7e-05	0.0589	CCCCCGCGCGGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	7	21	+	10.6923	7e-05	0.341	GAAGTCCAAAGCTCT
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	7	21	+	10.6923	7e-05	0.341	GAAGTCCAAAGCTCT
EMX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	6	15	-	10.3894	7e-05	1	GCTAATGACG
EMX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	6	15	-	10.3894	7e-05	1	GCTAATGACG
EMX1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	27	36	+	10.3894	7e-05	1	GCTAATGACG
EMX1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	79	88	-	10.3894	7e-05	1	GCTAATGACG
EMX1	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	100	109	+	10.3894	7e-05	1	GCTAATGACG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	50	63	+	3.66667	7e-05	0.379	TACCCCCCCGCACG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	85	98	-	3.66667	7e-05	0.379	GCCCCCACATGGCG
MNT	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	+	12.0758	7e-05	0.321	GCCACGTGGA
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	+	12.0758	7e-05	0.321	GCCACGTGGA
ELF1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	92	103	-	8.92727	7e-05	0.123	CACCAGGAAGCC
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	37	49	-	11.2245	7e-05	0.486	TTGGGGTCACTGG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	37	49	-	11.2245	7e-05	0.486	TTGGGGTCACTGG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	46	59	-	8.48485	7e-05	0.326	CTGACACATCATGG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	46	59	-	8.48485	7e-05	0.326	CTGACACATCATGG
USF2	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	57	67	+	11.2653	7e-05	0.154	GCCAGGTGGCA
GLIS1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	53	68	+	-9.55769	7e-05	0.329	GCTCCCCCCGCGACTT
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	47	62	-	-9.55769	7e-05	0.329	GCTCCCCCCGCGACTT
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	47	62	-	-9.55769	7e-05	0.329	GCTCCCCCCGCGACTT
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	47	56	+	11.3636	7e-05	0.134	ACCGGAACTG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	47	56	+	11.3636	7e-05	0.134	ACCGGAACTG
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	101	111	+	10.3469	7e-05	0.343	TACCACGTGAA
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	60	71	+	10.1803	7e-05	0.135	GAGCCGGAAGCC
EHF	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	72	-	10.1803	7e-05	0.135	ATGCCGGAAGCG
Dmbx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	75	91	+	11.3026	7e-05	1	GGAGCAGGATTACTCAT
PAX9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	55	71	+	0.327273	7e-05	0.501	GGCCATGCAAGGCTGAA
VSX2	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	14	21	-	11.5039	7e-05	1	CTAATTAT
VSX2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	62	-	11.5039	7e-05	1	CTAATTAT
VSX1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	14	21	-	11.0315	7e-05	1	CTAATTAT
VSX1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	62	-	11.0315	7e-05	1	CTAATTAT
VAX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.1339	7e-05	1	CTAATTAG
VAX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.1339	7e-05	1	CTAATTAG
FOXG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	1	8	+	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	1	8	+	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	1	8	+	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	4	11	+	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	4	11	+	12.7753	7e-05	1	ATAAACAA
FOXG1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	94	101	+	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	102	109	+	12.7753	7e-05	1	ATAAACAA
VSX2	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	78	85	+	11.5039	7e-05	1	CTAATTAT
VSX1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	78	85	+	11.0315	7e-05	1	CTAATTAT
VAX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.1339	7e-05	1	CTAATTAG
VAX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.1339	7e-05	1	CTAATTAG
FOXG1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	14	21	-	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	70	77	-	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	70	77	-	12.7753	7e-05	1	ATAAACAA
FOXG1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	82	89	-	12.7753	7e-05	1	ATAAACAA
FOXG1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	107	114	-	12.7753	7e-05	1	ATAAACAA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	32	49	+	-14.6447	7.01e-05	0.0538	GGAGGAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	66	83	-	-14.6447	7.01e-05	0.0538	GGAGGAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	66	83	-	-14.6447	7.01e-05	0.0538	GGAGGAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	66	83	-	-14.6447	7.01e-05	0.0538	GGAGGAGGAGGAGGAGGC
MEF2A	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	45	56	+	8.96774	7.01e-05	1	AGTATAAATAGA
Npas2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	+	11.918	7.01e-05	0.333	TCCACGTGGT
Npas2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	+	11.918	7.01e-05	0.333	TCCACGTGGT
Npas2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	-	11.918	7.01e-05	0.333	TCCACGTGGT
Rarg(var.2)	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	45	61	+	-5.90909	7.01e-05	1	AAGTGAATGAAAGGACA
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	11.9423	7.01e-05	0.298	ATCACGTGGC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	11.9423	7.01e-05	0.298	ATCACGTGGC
MAX	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	11.9423	7.01e-05	0.298	ATCACGTGGC
Arntl	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	103	112	-	11.1803	7.01e-05	0.273	GGTCACGCGT
SMAD3	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	34	43	+	9.49091	7.01e-05	1	AGTCTAGCCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	8.05769	7.01e-05	0.204	CACACGTGCC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	8.05769	7.01e-05	0.204	CACACGTGCC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	-	8.05769	7.01e-05	0.204	CTCGCGTGAC
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	60	72	-	11.6939	7.01e-05	0.181	TGCAGCTGGCGCG
Myod1	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	88	100	-	11.6939	7.01e-05	0.181	TGCAGCTGGCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	50	63	-	6.23404	7.01e-05	0.101	ACCCACCTGCGGCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	50	63	-	6.23404	7.01e-05	0.101	ACCCACCTGCGGCT
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	84	97	-	5.5	7.01e-05	0.0728	GGTGCCCACGGGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	84	97	-	5.5	7.01e-05	0.0728	GGTGCCCACGGGCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	69	79	+	10.9919	7.01e-05	0.024	GCCCCTCCCAA
SP3	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	14	24	-	10.9919	7.01e-05	0.024	GCCCCTCCCAA
SP3	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	28	38	-	10.9919	7.01e-05	0.024	GCCCCTCCCAA
HOXD11	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	78	-	11.4648	7.01e-05	1	GTCATTAAAT
Klf12	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	11	25	+	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	90	104	-	8.19672	7.01e-05	0.0695	ACCCACACCCACACC
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	35	+	10.9138	7.01e-05	0.205	GCCGCGTGCG
HEY2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	35	+	10.9138	7.01e-05	0.205	GCCGCGTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	30	39	-	10.9138	7.01e-05	0.205	GCCGCGTGCG
POU3F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	6	17	+	10.7581	7.01e-05	1	GTATTCAAATGA
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	6	17	+	10.7581	7.01e-05	1	GTATTCAAATGA
POU3F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	6	17	+	10.7581	7.01e-05	1	GTATTCAAATGA
POU3F2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	6	17	+	10.7581	7.01e-05	1	GTATTCAAATGA
POU3F2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	6	17	+	10.7581	7.01e-05	1	GTATTCAAATGA
XBP1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	33	46	-	9.71154	7.01e-05	0.529	TTCTCCTCGTCATC
XBP1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	49	62	+	9.71154	7.01e-05	0.529	TTCTCCTCGTCATC
XBP1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	53	66	-	9.71154	7.01e-05	0.529	TTCTCCTCGTCATC
XBP1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	69	82	+	9.71154	7.01e-05	0.529	TTCTCCTCGTCATC
TFAP2C	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	13	24	+	11.1327	7.02e-05	0.0866	CGGCCGGGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	+	11.1327	7.02e-05	0.0866	CGCCGTCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	-	11.1327	7.02e-05	0.0866	CGCCGTCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	-	11.1327	7.02e-05	0.0866	CGCCGTCGGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	102	-	11.1327	7.02e-05	0.0866	CGGCCGGGGGCG
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	10	28	-	10.4677	7.02e-05	0.15	CGCACCACCGGAGCGAAGC
INSM1	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	17	28	+	9.79592	7.02e-05	0.186	TTGCAGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	87	98	-	9.79592	7.02e-05	0.186	TTGCAGGGGCAG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	87	98	-	9.79592	7.02e-05	0.186	TTGCAGGGGCAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	55	72	-	-14.6579	7.02e-05	0.0538	GGAGGGAGGGGAGAGGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	55	72	-	-14.6579	7.02e-05	0.0538	GGAGGGAGGGGAGAGGAG
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	70	90	+	8.87097	7.02e-05	0.187	TTCTTGTTTTGGTTTTGCCAC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	76	96	+	8.87097	7.02e-05	0.187	GGTTGCTCTCGTTTTCTCCAG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	76	96	+	8.87097	7.02e-05	0.187	GGTTGCTCTCGTTTTCTCCAG
SP2	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	24	38	+	10.3276	7.02e-05	0.0154	TCCCTTCCCCCGCGC
SP2	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	28	42	+	10.3276	7.02e-05	0.0154	GATCCGCCCCGCGCG
SP2	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	73	87	-	10.3276	7.02e-05	0.0154	GATCCGCCCCGCGCG
SP2	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	77	91	-	10.3276	7.02e-05	0.0154	TCCCTTCCCCCGCGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	50	60	-	11.2545	7.02e-05	0.0672	ACGCTTCCTGT
ELK4	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	69	79	-	11.2545	7.02e-05	0.0672	ACGCTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	34	44	+	11.2545	7.02e-05	0.0672	CCTTTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	36	46	+	11.2545	7.02e-05	0.0672	ACGCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	77	87	+	11.2545	7.02e-05	0.0672	GTTCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	77	87	+	11.2545	7.02e-05	0.0672	GTTCTTCCGGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	93	103	+	11.2545	7.02e-05	0.0672	CCTTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	93	103	+	11.2545	7.02e-05	0.0672	CCTTTTCCGGG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	93	104	-	10.5172	7.02e-05	0.365	CCAACCACCCCA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	93	104	-	10.5172	7.02e-05	0.365	CCAACCACCCCA
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	72	86	+	8.55738	7.02e-05	0.477	CTGACAAAGCAAAGT
NR2C2	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	70	84	-	9.28571	7.02e-05	0.122	GGGGTGCAGAGAGCG
REST	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	18	38	-	5.02041	7.02e-05	0.227	CTTAGGAGCCTGGAGGGCTCT
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	31	51	+	5.02041	7.02e-05	0.227	GGCGGGACCACGGCGGGCGGG
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	31	51	+	5.02041	7.02e-05	0.227	GGCGGGACCACGGCGGGCGGG
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	31	51	+	5.02041	7.02e-05	0.227	GGCGGGACCACGGCGGGCGGG
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	83	94	+	6.71429	7.02e-05	0.213	AATGATGTAATG
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	26	37	-	8.09174	7.02e-05	0.855	TGACATCAGACA
EGR3	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	19	33	+	6.25862	7.02e-05	0.0416	CGCCTCCTCCGCGCA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	58	68	-	11.069	7.02e-05	0.0715	GGGTGGGAGCA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	58	68	-	11.069	7.02e-05	0.0715	GGGTGGGAGCA
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	26	36	-	11.4255	7.02e-05	0.259	GATGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	26	36	-	11.4255	7.02e-05	0.259	GATGACTCAGC
FOS	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	31	41	-	11.4255	7.02e-05	0.259	AATGACTCACA
ZIC3	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	42	56	+	8.01429	7.02e-05	0.117	GCCTCCCTGCGGTCC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	47	61	+	8.01429	7.02e-05	0.117	CCACCCCCACGGCTC
ZIC3	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	43	57	-	8.01429	7.02e-05	0.117	GCCTCCCTGCGGTCC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	58	72	+	8.01429	7.02e-05	0.117	GCCTCCCTGCGGTCC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	57	71	-	8.01429	7.02e-05	0.117	CCACCCCCACGGCTC
ZIC3	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	59	73	-	8.01429	7.02e-05	0.117	GCCTCCCTGCGGTCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	91	103	-	9.7931	7.02e-05	0.0554	CGCCTCCAAGGCC
Phox2b	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	21	31	+	11.1277	7.02e-05	1	TAACTCAATAA
Phox2b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	84	94	-	11.1277	7.02e-05	1	TAACTCAATAA
Phox2b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	84	94	-	11.1277	7.02e-05	1	TAACTCAATAA
Phox2b	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	84	94	-	11.1277	7.02e-05	1	TAACTCAATAA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	54	67	+	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	54	67	+	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	54	67	+	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	54	67	+	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	10	23	-	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	10	23	-	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	10	23	-	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	10	23	-	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	10	23	-	1.61702	7.02e-05	0.48	TAGGTGAAAGTTCT
E2F4	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	14	24	+	10.8621	7.02e-05	0.0506	GCGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	21	31	-	10.8621	7.02e-05	0.0506	AAGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	21	31	-	10.8621	7.02e-05	0.0506	AAGCGGGAGGC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	44	54	-	10.8621	7.02e-05	0.0506	AAGCGGGAGGC
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	94	104	+	10.8621	7.02e-05	0.0506	AAGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	94	104	+	10.8621	7.02e-05	0.0506	AAGCGGGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	100	110	-	10.8621	7.02e-05	0.0506	GCGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	100	110	-	10.8621	7.02e-05	0.0506	GCGCGCGAGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	100	110	-	10.8621	7.02e-05	0.0506	GCGCGCGAGCC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	100	110	-	10.8621	7.02e-05	0.0506	GCGCGCGAGCC
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	5	21	-	3.08197	7.02e-05	0.563	GGGCCCTGGGGAGGTCG
HLTF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	72	81	+	8.69512	7.02e-05	1	GACCTTTTGT
HLTF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	72	81	+	8.69512	7.02e-05	1	GACCTTTTGT
HLTF	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	34	43	-	8.69512	7.02e-05	1	GACCTTTTGT
Myog	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	9	19	-	11.7551	7.02e-05	0.171	CGCAGGTGCGG
Klf1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	7	17	+	10.7273	7.02e-05	0.0501	AGCCACGCCTA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	23	33	+	10.7273	7.02e-05	0.0501	AGCCACGCCTA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	23	33	+	10.7273	7.02e-05	0.0501	AGCCACGCCTA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	23	33	+	10.7273	7.02e-05	0.0501	AGCCACGCCTA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	23	33	+	10.7273	7.02e-05	0.0501	AGCCACGCCTA
Klf1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	98	108	-	10.7273	7.02e-05	0.0501	AGCCACGCCTA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr8:144821486..144821600,+__846.1.0.0	51	61	-	11.2545	7.03e-05	0.0551	TGCTTCAGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	91	101	+	11.2545	7.03e-05	0.0551	CCCCCCGGGCG
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	38	50	-	10.2653	7.03e-05	0.317	GGGCTGATGCCAC
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	38	50	-	10.2653	7.03e-05	0.317	GGGCTGATGCCAC
JUN	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	38	50	-	10.2653	7.03e-05	0.317	GGGCTGATGCCAC
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	38	50	-	10.2653	7.03e-05	0.317	GGGCTGATGCCAC
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	30	43	+	11.1154	7.03e-05	0.223	AGGTCCTGACTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	31	44	+	11.1154	7.03e-05	0.223	AGGTCCTGACTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	34	47	-	11.1154	7.03e-05	0.223	TCCCAGTGACTCAT
JUN(var.2)	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	71	84	-	11.1154	7.03e-05	0.223	AGGTCCTGACTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	72	85	-	11.1154	7.03e-05	0.223	AGGTCCTGACTCAC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	85	96	-	2.5	7.03e-05	0.298	CACCACGCGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	85	96	-	2.5	7.03e-05	0.298	CACCACGCGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	85	96	-	2.5	7.03e-05	0.298	CACCACGCGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	85	96	-	2.5	7.03e-05	0.298	CACCACGCGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	85	96	-	2.5	7.03e-05	0.298	CACCACGCGCCC
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	57	-	6.51724	7.03e-05	0.882	CGGGACTCCGCGTGCCC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	57	-	6.51724	7.03e-05	0.882	CGGGACTCCGCGTGCCC
TCF4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	38	47	-	12.102	7.03e-05	0.422	CCCACCTGTA
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	104	113	+	11.5517	7.03e-05	0.859	AACACCTGCG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	104	113	+	11.5517	7.03e-05	0.859	AACACCTGCG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	65	74	+	11.2692	7.03e-05	0.111	CACGGAAGTA
ETV6	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	67	76	+	11.2692	7.03e-05	0.111	CCGGGAAGTG
ETV6	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	39	48	-	11.2692	7.03e-05	0.111	CCGGGAAGTG
ETV6	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	41	50	-	11.2692	7.03e-05	0.111	CACGGAAGTA
ETV6	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	79	88	-	11.2692	7.03e-05	0.111	CCGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	79	88	-	11.2692	7.03e-05	0.111	CCGGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.2692	7.03e-05	0.111	ACAGGAAGTT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	26	34	+	9.7931	7.03e-05	0.335	ATGATTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	24	32	-	9.7931	7.03e-05	0.335	ATGATTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	105	113	+	9.7931	7.03e-05	0.335	ATGATTCAT
MYBL1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	61	72	+	9.86207	7.03e-05	1	GCCGTTACCTGT
EGR1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	2	15	+	10.1923	7.03e-05	0.0258	CGCCCACCTCCTGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	1	14	-	10.1923	7.03e-05	0.0258	CCCTCTCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	1	14	-	10.1923	7.03e-05	0.0258	CCCTCTCCCCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	1	14	-	10.1923	7.03e-05	0.0258	CCCTCTCCCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	1	14	-	10.1923	7.03e-05	0.0258	CCCTCTCCCCCAGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	15	28	-	10.1923	7.03e-05	0.0258	GCCCCGCCCCTTGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	45	+	10.1923	7.03e-05	0.0258	GTCCCGCCCCTGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	45	+	10.1923	7.03e-05	0.0258	GTCCCGCCCCTGGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	45	+	10.1923	7.03e-05	0.0258	GTCCCGCCCCTGGG
EGR1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	21	34	-	10.1923	7.03e-05	0.0258	GCACAGCCTCCGCC
EGR1	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	21	34	-	10.1923	7.03e-05	0.0258	GCACAGCCTCCGCC
EGR1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	21	34	-	10.1923	7.03e-05	0.0258	GCACAGCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	39	52	+	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	39	52	+	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	39	52	+	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	39	52	+	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	31	44	-	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	31	44	-	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	31	44	-	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	31	44	-	10.1923	7.03e-05	0.0258	TGCCCTCCCCCATG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	61	74	-	10.1923	7.03e-05	0.0258	CCCCAGCTCACGCC
EGR1	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	82	95	+	10.1923	7.03e-05	0.0258	GCACAGCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	100	113	+	10.1923	7.03e-05	0.0258	TAGCCTCCGCCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	100	113	+	10.1923	7.03e-05	0.0258	TAGCCTCCGCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	100	113	-	10.1923	7.03e-05	0.0258	CGCCCACCTCCTGG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	-	10.5091	7.03e-05	0.227	CGTGAGTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	-	10.5091	7.03e-05	0.227	CGTGAGTCACC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	+	10.5091	7.03e-05	0.227	CGTGAGTCACC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	30	40	+	10.5091	7.03e-05	0.227	CATGACTCATA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	30	40	+	10.5091	7.03e-05	0.227	CATGACTCATA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	30	40	-	10.5091	7.03e-05	0.227	CATGACTCATA
HOXC13	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	45	55	-	10.5806	7.03e-05	1	CCTTATAAAAC
HOXC13	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	48	58	-	10.5806	7.03e-05	1	CCTTATAAAAC
HOXC13	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	49	59	-	10.5806	7.03e-05	1	CCTTATAAAAC
HOXC13	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	60	70	+	10.5806	7.03e-05	1	CCTTATAAAAC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	91	105	-	10.7838	7.03e-05	0.188	GTGGGAGAGGGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	91	105	-	10.7838	7.03e-05	0.188	GTGGGAGAGGGGGAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	91	105	-	10.7838	7.03e-05	0.188	GTGGGAGAGGGGGAA
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	-	9.91803	7.03e-05	0.0644	CCCCTGAAGGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	+	9.91803	7.03e-05	0.0644	CCCCTGAAGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	+	9.91803	7.03e-05	0.0644	CCCCTGAAGGGCA
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	-	9.91803	7.03e-05	0.0644	CCCCTGAAGGGCA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	+	9.91803	7.03e-05	0.0644	AGCCCGCGCGGCC
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	+	9.91803	7.03e-05	0.0644	CCCCTGAAGGGCA
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	75	89	+	10.2121	7.03e-05	0.117	CCCTCACGCGACCGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	+	10.4255	7.03e-05	0.23	CGTGACTCACG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	+	10.4255	7.03e-05	0.23	CGTGACTCACG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	-	10.4255	7.03e-05	0.23	CGTGACTCACG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	-	10.4255	7.03e-05	0.23	CGTGACTCACG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	38	49	+	10.2931	7.03e-05	0.33	CCGCCCACAGTG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	38	49	+	10.2931	7.03e-05	0.33	CCGCCCACAGTG
CTCF	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	45	63	+	8.60656	7.03e-05	0.124	AAGCCAGGAGAGGGCTTCC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	65	83	+	8.60656	7.03e-05	0.124	CTTCCGGCCGGAGGCAGTG
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	65	83	+	8.60656	7.03e-05	0.124	CTTCCGGCCGGAGGCAGTG
CTCF	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	52	70	-	8.60656	7.03e-05	0.124	AAGCCAGGAGAGGGCTTCC
E2F4	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	10	20	+	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	9	19	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	9	19	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	11	21	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	11	21	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	11	21	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	39	49	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	40	50	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	50	60	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	50	60	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	50	60	-	10.8448	7.03e-05	0.0506	GCGCGGGGGAG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	26	39	+	2.72727	7.03e-05	0.233	CAAAACAGGAACCC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	35	48	-	2.72727	7.03e-05	0.233	CAAAACAGGAACCC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	44	55	+	10.75	7.03e-05	0.0339	GCCAAGCCCAGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	44	55	+	10.75	7.03e-05	0.0339	GCCAAGCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	44	55	+	10.75	7.03e-05	0.0339	GCCAAGCCCAGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	46	57	-	10.6212	7.04e-05	0.109	CCAGGTCCCCAG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	46	57	-	10.6212	7.04e-05	0.109	CCAGGTCCCCAG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	46	57	-	10.6212	7.04e-05	0.109	CCAGGTCCCCAG
HINFP	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	58	69	+	10.6212	7.04e-05	0.109	CCAGGTCCCCAG
NEUROD2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	73	82	+	11.3621	7.04e-05	1	ACCGTATGTC
RREB1	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	22	41	+	3.58716	7.04e-05	0.0652	CCCCCCGCCAACAGCACCTT
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	58	71	+	6.21053	7.04e-05	0.56	GCCCCAGCTGCTGC
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	58	71	+	6.21053	7.04e-05	0.56	GCCCCAGCTGCTGC
THAP1	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	20	28	-	10.0263	7.04e-05	0.215	CTGCCAGTA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	74	91	+	-14.6842	7.04e-05	0.0538	GGAGGCGGGGCTGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	21	38	-	-14.6842	7.04e-05	0.0538	GAAAGAGGTGGAGCAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	21	38	-	-14.6842	7.04e-05	0.0538	GAAAGAGGTGGAGCAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	21	38	-	-14.6842	7.04e-05	0.0538	GAAAGAGGTGGAGCAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	21	38	-	-14.6842	7.04e-05	0.0538	GAAAGAGGTGGAGCAGGC
KLF14	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	4	17	-	8.68966	7.04e-05	0.0364	CGGCCCGCCCCCGA
KLF14	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	6	19	-	8.68966	7.04e-05	0.0364	CGCCCCCCCCACCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	7	20	-	8.68966	7.04e-05	0.0364	GGCCACGCCTCAGT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	24	37	-	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	24	37	-	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	55	68	+	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	55	68	+	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	55	68	+	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	55	68	+	8.68966	7.04e-05	0.0364	GGCCCCGCCCCGAG
KLF14	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	96	109	+	8.68966	7.04e-05	0.0364	CGCCCCCCCCACCC
KLF14	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	98	111	+	8.68966	7.04e-05	0.0364	CGGCCCGCCCCCGA
ESR2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	77	91	-	10.6538	7.04e-05	0.451	AGGTCAGCAAGGGCA
TFAP2B	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	22	+	11.1636	7.04e-05	0.0924	TGCCCCCGGCCC
TFAP2B	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	+	11.1636	7.04e-05	0.0924	AGCCCGGCGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	-	11.1636	7.04e-05	0.0924	AGCCCGGCGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	93	104	-	11.1636	7.04e-05	0.0924	TGCCCCCGGCCC
EOMES	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	64	76	+	11.0732	7.04e-05	1	TAGGTGTGAGTGA
EOMES	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	64	76	+	11.0732	7.04e-05	1	TAGGTGTGAGTGA
MYF6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	-	10.4394	7.04e-05	1	AACACCTGCT
LHX6	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.4545	7.04e-05	1	CCTAATTAGA
YY2	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	6	16	+	11.1212	7.04e-05	0.38	CTTCGCCATAA
YY2	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	99	109	-	11.1212	7.04e-05	0.38	CTTCGCCATAA
Hoxd8	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	44	60	+	10.8333	7.04e-05	1	TTGTTAATTAAATGTTT
NRL	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	4	14	+	10.75	7.04e-05	0.823	GTGCTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	86	96	+	10.75	7.04e-05	0.823	GTGCTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	86	96	+	10.75	7.04e-05	0.823	GTGCTGCTGAC
ZBTB7A	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	74	85	-	10.8143	7.04e-05	0.217	GGCGCCCACGCC
ZBTB7A	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	30	41	+	10.8143	7.04e-05	0.217	GGCGCCCACGCC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	79	89	-	11.0517	7.04e-05	0.0715	AAGCGGGAATG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	79	89	-	11.0517	7.04e-05	0.0715	AAGCGGGAATG
ETV3	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	20	29	+	11.0845	7.04e-05	0.162	CTCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	86	95	-	11.0845	7.04e-05	0.162	CTCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	86	95	-	11.0845	7.04e-05	0.162	CTCGGAAGTG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	45	57	+	10.2295	7.04e-05	0.0589	GGCCCGGTGGGGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	83	95	+	10.2295	7.04e-05	0.0589	CGCCTCGGCGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	93	105	-	10.2295	7.04e-05	0.0589	GGCCCCGGCGGGG
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	45	59	+	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
MEF2C	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	56	70	-	10.8644	7.04e-05	1	GTTTCTTAAATAGCA
Zfx	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	47	60	+	10.697	7.05e-05	0.0637	CACCTCCAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	83	96	-	10.697	7.05e-05	0.0637	CTGGCGGAGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	83	96	-	10.697	7.05e-05	0.0637	CTGGCGGAGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	83	96	-	10.697	7.05e-05	0.0637	CTGGCGGAGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	83	96	-	10.697	7.05e-05	0.0637	CTGGCGGAGGCCTG
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	27	40	-	5.23469	7.05e-05	0.371	TGGCTGCGCGCCTG
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr5:34586331..34586445,-__2205.1.0.0	19	29	+	10.9079	7.05e-05	1	GACATGAATCA
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	21	31	+	10.9079	7.05e-05	1	GTAATGAATCA
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	31	41	-	10.9079	7.05e-05	1	GACATGAATCA
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	91	104	-	2.90244	7.05e-05	0.493	AAAATCAAAGTTCA
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	91	104	-	2.90244	7.05e-05	0.493	AAAATCAAAGTTCA
SPDEF	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	57	67	+	10.1818	7.05e-05	0.269	TCCCGGATCCC
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	61	71	+	10.1818	7.05e-05	0.269	AGCCGGAAGCT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	66	76	+	10.1818	7.05e-05	0.269	AGCCGGAAGCT
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	66	76	+	10.1818	7.05e-05	0.269	AGCCGGAAGCT
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	66	76	+	10.1818	7.05e-05	0.269	AGCCGGAAGCT
CREB3L1	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	22	35	-	8.4697	7.05e-05	0.326	ACGCCACGGCGTCT
CREB3L1	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	80	93	+	8.4697	7.05e-05	0.326	ACGCCACGGCGTCT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	18	32	+	10.4894	7.05e-05	0.333	GGAAGTGACGCCAGA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	74	88	-	10.4894	7.05e-05	0.333	GGAAGTGACGCCAGA
SP1	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	43	53	+	10.8269	7.05e-05	0.0176	TTCCCACCCCG
SP1	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	62	72	-	10.8269	7.05e-05	0.0176	TTCCCACCCCG
Nr5a2	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	92	106	+	10.1034	7.05e-05	0.504	GCCCCGAAGGCCAGC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	32	42	-	11	7.05e-05	0.0702	TCCCGGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	32	42	-	11	7.05e-05	0.0702	TCCCGGAGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	22	42	-	9.55102	7.05e-05	0.0202	GAGGGAGGGCCAGAGGAGCAG
ZNF263	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	31	51	-	9.55102	7.05e-05	0.0202	GGAGAGCGGGGGCGGGGAGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	32	52	-	9.55102	7.05e-05	0.0202	GAGGGAGGAAGTCACGTGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	43	63	-	9.55102	7.05e-05	0.0202	CAAGCTGCGGAGGGAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	49	69	-	9.55102	7.05e-05	0.0202	GGAAGCAGGAGAGAAAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	49	69	-	9.55102	7.05e-05	0.0202	GGAAGCAGGAGAGAAAAAAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	56	76	-	9.55102	7.05e-05	0.0202	GAGGGCGAGGAGGAGAAGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	59	79	-	9.55102	7.05e-05	0.0202	GGGGGAGGGAGACGGGAGTCT
ZNF263	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	60	80	-	9.55102	7.05e-05	0.0202	CGAGGAGAGGAAGAGGAAAAC
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	67	87	-	9.55102	7.05e-05	0.0202	AGGGGCACAGGGGGCTGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	3	23	+	9.55102	7.05e-05	0.0202	AGAGGGGGGGCAGAGGGAAGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	11	31	+	9.55102	7.05e-05	0.0202	GGGGATGGGACGGGGTGTGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	15	35	+	9.55102	7.05e-05	0.0202	CGGGGCGGGGGGAGAGGGGTT
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	28	48	+	9.55102	7.05e-05	0.0202	AGGGGCACAGGGGGCTGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	35	55	+	9.55102	7.05e-05	0.0202	CGAGGAGAGGAAGAGGAAAAC
ZNF263	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	36	56	+	9.55102	7.05e-05	0.0202	GGGGGAGGGAGACGGGAGTCT
ZNF263	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	64	84	+	9.55102	7.05e-05	0.0202	GGAGAGCGGGGGCGGGGAGGG
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	2	18	-	10.5584	7.05e-05	1	ACAGTGAAAACAAAGAG
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	2	18	-	10.5584	7.05e-05	1	ACAGTGAAAACAAAGAG
Foxk1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	35	51	+	10.5584	7.05e-05	1	ACAGTGAAAACAAAGAG
Foxk1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	64	80	-	10.5584	7.05e-05	1	ACAGTGAAAACAAAGAG
Foxk1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	97	113	+	10.5584	7.05e-05	1	ACAGTGAAAACAAAGAG
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	6	15	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	6	15	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	9	18	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	9	18	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	9	18	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	21	+	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	4	13	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	4	13	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	6	15	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	6	15	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	7	16	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	23	32	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	14	23	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	14	23	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	35	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	35	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	35	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	28	37	+	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	23	32	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	34	43	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	35	44	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	35	44	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	29	38	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	29	38	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	30	39	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	40	49	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	31	40	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	32	41	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	37	46	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	39	48	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	50	59	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	43	52	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	46	55	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	69	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	52	61	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	63	72	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	56	65	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	66	75	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	69	78	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	63	72	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	63	72	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	82	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	64	73	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	64	73	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	64	73	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	64	73	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	74	83	+	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	75	84	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	75	84	+	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	66	75	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	71	80	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	72	81	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	72	81	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	72	81	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	72	81	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	82	91	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	83	92	+	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	78	87	-	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	83	92	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	108	+	11.1224	7.05e-05	0.0245	ACTCCGCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	97	106	-	11.1224	7.05e-05	0.0245	CTCCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	102	111	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	102	111	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	102	111	-	11.1224	7.05e-05	0.0245	CCTCCGCCCA
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	73	90	+	8.44231	7.05e-05	0.667	GGCAGGCAGGGACCCGCA
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	73	90	+	8.44231	7.05e-05	0.667	GGCAGGCAGGGACCCGCA
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	73	90	+	8.44231	7.05e-05	0.667	GGCAGGCAGGGACCCGCA
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	60	70	+	11	7.05e-05	0.306	CTTCCTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	60	70	+	11	7.05e-05	0.306	CTTCCTGAAAT
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	76	86	+	11.3673	7.05e-05	0.381	CTTTCCATGAA
Gmeb1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	1	17	+	10.7237	7.05e-05	0.668	GTGTGGGCGTCAGGGGG
MAFG	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	85	105	+	9.71429	7.05e-05	1	TGCATGCTGAGCCTGCGTGAC
MAFG	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	35	55	-	9.71429	7.05e-05	1	TGCATGCTGAGCCTGCGTGAC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	31	41	+	11.4655	7.05e-05	0.902	CGCTGTTTTCC
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	31	41	+	11.4655	7.05e-05	0.902	CGCTGTTTTCC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	31	41	+	11.4655	7.05e-05	0.902	CGCTGTTTTCC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	31	41	+	11.4655	7.05e-05	0.902	CGCTGTTTTCC
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	31	41	+	11.4655	7.05e-05	0.902	CGCTGTTTTCC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	46	59	-	9.62857	7.05e-05	0.271	CCGTCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	46	59	-	9.62857	7.05e-05	0.271	CCGTCACGTGACCC
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	61	74	+	9.62857	7.05e-05	0.271	GTGTTACGTCACGG
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	72	86	-	10.8276	7.05e-05	0.766	CACTTACAAAGAAGA
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	72	86	-	10.8276	7.05e-05	0.766	CACTTACAAAGAAGA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	6	20	+	8.18033	7.05e-05	0.0695	GGACCCGCCCCCACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	6	20	+	8.18033	7.05e-05	0.0695	GGACCCGCCCCCACC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	12	26	-	8.18033	7.05e-05	0.0695	AGCCCCGCCCCAGGA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	12	26	-	8.18033	7.05e-05	0.0695	AGCCCCGCCCCAGGA
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	12	26	-	8.18033	7.05e-05	0.0695	AGCCCCGCCCCAGGA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	12	26	-	8.18033	7.05e-05	0.0695	AGCCCCGCCCCAGGA
EGR2	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	35	45	+	9.43103	7.05e-05	0.0855	ACGCCTGCGCT
EGR2	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	70	80	-	9.43103	7.05e-05	0.0855	ACGCCTGCGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	51	62	+	11.2	7.06e-05	0.0577	CGCCCCACGCCG
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	-	11.4808	7.06e-05	0.805	GTTGTGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	-	11.4808	7.06e-05	0.805	GTTGTGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	-	11.4808	7.06e-05	0.805	GTTGTGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	+	11.4808	7.06e-05	0.805	GTTGTGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	+	11.4808	7.06e-05	0.805	GTTGTGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	+	11.4808	7.06e-05	0.805	GTTACGTAAT
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	23	33	+	10.377	7.06e-05	0.179	AACAGGAAGCC
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	23	33	+	10.377	7.06e-05	0.179	AACAGGAAGCC
RREB1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	4	23	-	3.57798	7.06e-05	0.0652	CCACCATCCCCCACATCCCT
RREB1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	48	67	-	3.57798	7.06e-05	0.0652	GCACACCCCGCACACACCCA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	78	97	-	3.57798	7.06e-05	0.0652	CCCACACAAACACACCCAGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	78	97	-	3.57798	7.06e-05	0.0652	CCCACACAAACACACCCAGA
RREB1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	92	111	+	3.57798	7.06e-05	0.0652	CCACCATCCCCCACATCCCT
TCF3	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	9	18	+	12.25	7.06e-05	0.404	CCCACCTGCC
TCF3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	44	-	12.25	7.06e-05	0.404	CCCACCTGCC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	69	78	+	12.25	7.06e-05	0.404	CCCACCTGCC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	69	78	+	12.25	7.06e-05	0.404	CCCACCTGCC
TCF3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	80	+	12.25	7.06e-05	0.404	CCCACCTGCC
ZIC1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	23	36	+	6.21277	7.06e-05	0.101	GACCCCCCACCCCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	23	36	-	6.21277	7.06e-05	0.101	CGCCCCCTCCCGCG
ZIC1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	79	92	+	6.21277	7.06e-05	0.101	CGCCCCCTCCCGCG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	21	31	+	10.7959	7.06e-05	0.531	TGTGCGGGCGG
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	21	31	+	10.7959	7.06e-05	0.531	TGTGCGGGCGG
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	56	66	-	10.7959	7.06e-05	0.531	TCTGCGGGCAG
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	56	66	-	10.7959	7.06e-05	0.531	TCTGCGGGCAG
GCM1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	88	98	+	10.7959	7.06e-05	0.531	TGTGCGGGCGG
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	19	36	+	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	19	36	+	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	27	44	-	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	27	44	-	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
GATA1::TAL1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	71	88	+	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
GATA1::TAL1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	79	96	-	10.7273	7.06e-05	1	GCTATCTCGCGACAGCTG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	43	58	-	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	43	58	-	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	96	111	+	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	96	111	+	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	96	111	+	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	96	111	+	10.1818	7.06e-05	0.0398	CCCTGCCCGCCCACAG
TFEC	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	11.4024	7.06e-05	0.185	ACCACGTGCC
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	30	40	+	11.1154	7.06e-05	0.0758	GGCCCAAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	33	-	11.1154	7.06e-05	0.0758	CCCCGGAGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	37	47	+	11.1154	7.06e-05	0.0758	CCCCGGAGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	51	61	-	11.1154	7.06e-05	0.0758	GGCCCAAGGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	103	113	+	11.1154	7.06e-05	0.0758	AGCCTCGAGCA
TCF7L2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	74	87	+	11.0182	7.06e-05	1	AAGAATCAAAGGAA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	23	39	+	3.65455	7.06e-05	0.0308	CTTTCCCCCCCCCCTTT
SP4	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	30	46	+	3.65455	7.06e-05	0.0308	GGAGCCGCGCCCCATCG
SP4	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	69	85	-	3.65455	7.06e-05	0.0308	GGAGCCGCGCCCCATCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	11	22	+	11.1224	7.06e-05	0.0866	TGCCCCCGGCCC
TFAP2C	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	41	52	+	11.1224	7.06e-05	0.0866	CGCCCCCCGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	53	64	+	11.1224	7.06e-05	0.0866	GGCCTCGGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	53	64	+	11.1224	7.06e-05	0.0866	GGCCTCGGGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	57	68	+	11.1224	7.06e-05	0.0866	CACCCGCGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	+	11.1224	7.06e-05	0.0866	TGCCTCTGGGCT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	+	11.1224	7.06e-05	0.0866	CGCCGTAGGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	-	11.1224	7.06e-05	0.0866	CGCCGTAGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	-	11.1224	7.06e-05	0.0866	CGCCGTAGGGCT
TFAP2C	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	63	74	-	11.1224	7.06e-05	0.0866	CGCCCCCCGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	63	74	-	11.1224	7.06e-05	0.0866	AACCCGAGGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	93	104	-	11.1224	7.06e-05	0.0866	TGCCCCCGGCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	46	+	6.24138	7.06e-05	0.0417	CCCCCCCCCCCCGCA
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	20	34	-	6.24138	7.06e-05	0.0417	CCCCTCCCCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	86	100	+	6.24138	7.06e-05	0.0417	TTTCGCCTCCGCCTT
PLAG1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	68	81	-	5.47959	7.06e-05	0.073	GGGGCGGGCGGGGA
PLAG1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	34	47	+	5.47959	7.06e-05	0.073	GGGGCGGGCGGGGA
MEOX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	12	21	-	10.1287	7.06e-05	1	TGTAATTATG
MEOX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	12	21	-	10.1287	7.06e-05	1	TGTAATTATG
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	54	74	+	8.85484	7.06e-05	0.187	TAAAGTTTTCTTTTTCTCCTT
EBF1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	13	26	+	9.01639	7.06e-05	0.365	AGCCCCGAGAGAGT
EBF1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	97	110	+	9.01639	7.06e-05	0.365	TGCCCCAAGAGAGT
EBF1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	89	102	-	9.01639	7.06e-05	0.365	AGCCCCGAGAGAGT
Mlxip	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	4	11	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	16	23	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	16	23	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	25	32	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	25	32	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	25	32	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	33	40	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	35	42	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	35	42	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	50	57	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	56	63	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	52	59	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	55	62	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	55	62	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	58	65	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	69	76	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	69	76	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	69	76	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	68	75	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	68	75	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	74	81	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	74	81	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	83	90	+	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	83	90	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	88	95	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	88	95	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	96	103	-	12.6885	7.06e-05	0.275	GCACGTGA
Mlxip	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	104	111	+	12.6885	7.06e-05	0.275	GCACGTGA
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	60	73	+	10.0172	7.06e-05	0.292	GGCGCCAGAGCAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	60	73	+	10.0172	7.06e-05	0.292	GGCGCCAGAGCAGC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.1.0	74	87	+	10.0172	7.06e-05	0.292	GGCGCCAGAGCAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:25228655..25228769,+__1580.1.0.0	74	87	+	10.0172	7.06e-05	0.292	GGCGCCAGAGCAGC
ERG	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	11.3273	7.06e-05	0.134	GCCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	11.3273	7.06e-05	0.134	GCCGGAAGCT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	56	68	-	9.77586	7.06e-05	0.0554	TGCCCTGCCGGGC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	102	112	+	10.8197	7.06e-05	0.0696	GCGGAAACGCC
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	19	30	-	2.90164	7.06e-05	0.598	TGACTGATGGCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	19	30	-	2.90164	7.06e-05	0.598	TGACTGATGGCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	74	85	+	2.90164	7.06e-05	0.598	TGACTGATGGCA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	74	85	+	2.90164	7.06e-05	0.598	TGACTGATGGCA
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	65	77	-	11.6735	7.07e-05	0.181	TGCACCTGCTTTA
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	65	77	-	11.6735	7.07e-05	0.181	TGCACCTGCTTTA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	10	23	+	2.70909	7.07e-05	0.233	AAATTCCGGAAGAT
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	24	34	-	11.3269	7.07e-05	0.401	TGGCTGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	55	65	+	11.3269	7.07e-05	0.401	TGGCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	74	84	-	11.3269	7.07e-05	0.401	TGGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	74	84	-	11.3269	7.07e-05	0.401	TGGCTGAGTCA
JUNB	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	14	24	+	11.0408	7.07e-05	0.225	GGCTGAGTCAC
JUNB	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	14	24	+	11.0408	7.07e-05	0.225	GGCTGAGTCAC
JUNB	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	92	102	-	11.0408	7.07e-05	0.225	GGCTGAGTCAC
RELA	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	6	15	+	9.73469	7.07e-05	0.238	CTGGCTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	49	58	+	9.73469	7.07e-05	0.238	CTGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	49	58	+	9.73469	7.07e-05	0.238	CTGGCTTTCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	49	58	+	9.73469	7.07e-05	0.238	CTGGCTTTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	11	25	+	10.3103	7.07e-05	0.0154	CTTCCGCTCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	11	25	+	10.3103	7.07e-05	0.0154	CTTCCGCTCCCGCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	21	35	+	10.3103	7.07e-05	0.0154	TCCCCTCTCCTCCCC
SP2	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	21	35	-	10.3103	7.07e-05	0.0154	GCTCCACCCCTTGAA
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	34	48	-	10.3103	7.07e-05	0.0154	CCCCTTCCCCCCCAC
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	67	81	+	10.3103	7.07e-05	0.0154	CCCCTTCCCCCCCAC
SP2	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	56	70	-	10.3103	7.07e-05	0.0154	TCCGCGCCCCCCTCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	80	94	+	10.3103	7.07e-05	0.0154	GCTCCACCCCTTGAA
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	80	94	+	10.3103	7.07e-05	0.0154	GCTCCACCCCTTGAA
SP2	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	90	104	-	10.3103	7.07e-05	0.0154	CTTCCGCTCCCGCCC
Nr2f6	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	38	51	+	8.60606	7.07e-05	0.408	GAGGTTTGAGGTCG
Arntl	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	61	70	-	11.1639	7.07e-05	0.274	AGCCACGTGC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	9	19	-	9.94545	7.07e-05	0.0211	GAGCCGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	9	19	-	9.94545	7.07e-05	0.0211	GAGCCGGCCCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	86	96	+	9.94545	7.07e-05	0.0211	ACGCCTGCGAG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	7	19	+	9.90164	7.07e-05	0.0644	AGCCTTGGCGGCG
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	22	34	+	9.90164	7.07e-05	0.0644	CCCCCCGACGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	43	55	+	9.90164	7.07e-05	0.0644	AGCCTTGGCGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	81	93	-	9.90164	7.07e-05	0.0644	CCCCCCGACGGCC
GLIS2	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	4	17	+	8.06557	7.07e-05	0.185	CCCCTCCCGCGTCC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	11	24	+	8.06557	7.07e-05	0.185	GCCCCCCCGCCCTC
GLIS2	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	9	22	-	8.06557	7.07e-05	0.185	CCCCTCCCGCGTCC
GLIS2	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	42	55	+	8.06557	7.07e-05	0.185	CCCCTCCCGCGTCC
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	47	60	+	8.06557	7.07e-05	0.185	GCCCCCCCGCCCTC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	47	60	+	8.06557	7.07e-05	0.185	GCCCCCCCGCCCTC
GLIS2	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	60	73	-	8.06557	7.07e-05	0.185	CCCCTCCCGCGTCC
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	74	-	8.06557	7.07e-05	0.185	GCCCCCCCGCCCTC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	74	-	8.06557	7.07e-05	0.185	GCCCCCCCGCCCTC
GLIS2	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	93	106	+	8.06557	7.07e-05	0.185	CCCCTCCCGCGTCC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.4848	7.07e-05	0.292	GGCACGTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.4848	7.07e-05	0.292	GGCACGTGGC
ZNF740	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	7	16	-	10.578	7.07e-05	0.0553	AACCCCCCTC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	43	52	+	10.578	7.07e-05	0.0553	AACCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	43	52	+	10.578	7.07e-05	0.0553	AACCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	43	52	+	10.578	7.07e-05	0.0553	AACCCCCCTC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	43	52	+	10.578	7.07e-05	0.0553	AACCCCCCTC
LHX2	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	-	11.3556	7.07e-05	1	GCTAATTATT
MIXL1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	10.0625	7.07e-05	1	ATTAATTAAC
Foxo1	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	10	20	+	11.4483	7.07e-05	0.902	CGCTGTTGACA
Foxo1	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	95	105	-	11.4483	7.07e-05	0.902	CGCTGTTGACA
NR3C1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	16	32	-	5.06122	7.07e-05	1	AAGTACAGGAAGTGCTG
USF1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	80	90	-	10.9388	7.08e-05	0.219	CCCACCTGACT
USF1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	25	35	+	10.9388	7.08e-05	0.219	CCCACCTGACT
Tcf12	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	60	70	-	11.6531	7.08e-05	0.189	GGCAGGTGGCG
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	45	55	+	11.6531	7.08e-05	0.189	GGCAGGTGGCG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	45	55	+	11.6531	7.08e-05	0.189	GGCAGGTGGCG
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	45	55	+	11.6531	7.08e-05	0.189	GGCAGGTGGCG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	45	55	+	11.6531	7.08e-05	0.189	GGCAGGTGGCG
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	35	54	-	3.56881	7.08e-05	0.0652	CACCCCCCACCCCCACCCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	75	94	+	3.56881	7.08e-05	0.0652	CGCCCAGACACCACACATGC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	75	94	+	3.56881	7.08e-05	0.0652	CGCCCAGACACCACACATGC
PKNOX1	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	32	43	+	2.36735	7.08e-05	1	CGACAGCTGTGG
PKNOX1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	55	66	-	2.36735	7.08e-05	1	TGACAGATAGCA
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	72	83	-	2.36735	7.08e-05	1	CGACAGCTGTGG
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	72	83	-	2.36735	7.08e-05	1	CGACAGCTGTGG
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	21	28	-	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	71	78	-	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	71	78	-	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	99	106	-	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	5	12	+	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	5	12	+	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	5	12	+	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	32	39	+	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.0.0	47	54	+	11.7869	7.08e-05	0.972	ATGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.1.0	47	54	+	11.7869	7.08e-05	0.972	ATGACAGG
TEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	-	10.5818	7.08e-05	1	AATTACGCAACG
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	69	78	+	11.0303	7.08e-05	0.334	CGGTCATTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	69	78	+	11.0303	7.08e-05	0.334	CGGTCATTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	69	78	+	11.0303	7.08e-05	0.334	CGGTCATTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	69	78	+	11.0303	7.08e-05	0.334	CGGTCATTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	69	78	+	11.0303	7.08e-05	0.334	CGGTCATTCC
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	22	39	-	4.48276	7.08e-05	0.318	CAACCACGCCCAGCTCCT
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	22	39	-	4.48276	7.08e-05	0.318	CAACCACGCCCAGCTCCT
MAFF	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	51	68	-	10.8	7.08e-05	0.965	GCGGCGTCAGCAAGAAGT
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	28	39	+	6.69388	7.08e-05	0.214	TCTGATGTCACA
E2F6	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	32	42	-	11.0345	7.08e-05	0.0717	TGGCGGGAATT
E2F6	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	73	83	+	11.0345	7.08e-05	0.0717	TGGCGGGAATT
EHF	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	65	-	10.1639	7.08e-05	0.135	GAACCGGAAGCT
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	16	33	-	6.40816	7.08e-05	0.979	AACGCGCCCAAACGTGCT
Mecom	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	41	54	+	8.33708	7.08e-05	1	CAGACAAGAGAATA
Mecom	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	41	54	+	8.33708	7.08e-05	1	CAGACAAGAGAATA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	36	49	-	11.0962	7.08e-05	0.223	GCAGCGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	36	49	-	11.0962	7.08e-05	0.223	GCAGCGTGAGTCAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	63	76	+	11.0962	7.08e-05	0.223	GCAGCGTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	63	76	+	11.0962	7.08e-05	0.223	GCAGCGTGAGTCAC
CTCF	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	22	40	+	8.59016	7.08e-05	0.124	AGGCCGCCTGAGGGAAACA
CTCF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	23	41	+	8.59016	7.08e-05	0.124	GCGCCGGAGGGAGGCGGTG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	14	32	-	8.59016	7.08e-05	0.124	TGGCCGCCGGAGTGAGCCA
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	75	93	-	8.59016	7.08e-05	0.124	AGGCCGCCTGAGGGAAACA
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	75	93	-	8.59016	7.08e-05	0.124	AGGCCGCCTGAGGGAAACA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	54	67	-	8.67241	7.08e-05	0.0365	GGCCCCGGCCACTC
NFYA	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	9	26	-	9.04878	7.08e-05	0.201	GGCTTGCTGATGGGTCCG
NFYA	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	33	50	-	9.04878	7.08e-05	0.201	GGCTTGCTGATGGGTCCG
NFYA	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	65	82	+	9.04878	7.08e-05	0.201	GGCTTGCTGATGGGTCCG
NFYA	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	89	106	+	9.04878	7.08e-05	0.201	GGCTTGCTGATGGGTCCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	114	+	11.7143	7.08e-05	0.171	GGCAGGTGGCC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	114	+	11.7143	7.08e-05	0.171	GGCAGGTGGCC
ZNF143	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	86	101	+	1.25862	7.08e-05	0.4	AGCCCACCATGCACGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	17	26	+	9.92742	7.08e-05	0.0515	CCCGCGTGCC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	20	29	+	9.92742	7.08e-05	0.0515	CCCACGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	21	30	+	9.92742	7.08e-05	0.0515	CCCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	35	+	9.92742	7.08e-05	0.0515	GCCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	35	+	9.92742	7.08e-05	0.0515	GCCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	17	26	-	9.92742	7.08e-05	0.0515	GGCACGCGGG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	20	29	-	9.92742	7.08e-05	0.0515	GGCGCGTGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	30	39	+	9.92742	7.08e-05	0.0515	CGCACGCGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	21	30	-	9.92742	7.08e-05	0.0515	GGCACGCGGG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	35	-	9.92742	7.08e-05	0.0515	CGCACGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	35	-	9.92742	7.08e-05	0.0515	CGCACGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	30	39	-	9.92742	7.08e-05	0.0515	GCCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	39	48	+	9.92742	7.08e-05	0.0515	CCCACGCGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	39	48	-	9.92742	7.08e-05	0.0515	GGCGCGTGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	95	+	9.92742	7.08e-05	0.0515	GGCGCGTGGG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	86	95	-	9.92742	7.08e-05	0.0515	CCCACGCGCC
DUX4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	60	70	-	10.617	7.09e-05	1	TAAATGAATCT
DUX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	60	70	-	10.617	7.09e-05	1	TAAATGAATCT
DUX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	60	70	-	10.617	7.09e-05	1	TAAATGAATCT
DUX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	60	70	-	10.617	7.09e-05	1	TAAATGAATCT
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	38	48	+	10.9837	7.09e-05	0.024	GCCCCGCCTCA
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	38	48	+	10.9837	7.09e-05	0.024	GCCCCGCCTCA
SP3	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	28	38	-	10.9837	7.09e-05	0.024	GCCCCGCCTCA
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	32	44	+	11.2041	7.09e-05	0.486	CGTGGGTCAAGGG
NR2F1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	32	44	+	11.2041	7.09e-05	0.486	CGTGGGTCAAGGG
NR2F1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	71	83	-	11.2041	7.09e-05	0.486	CGTGGGTCAAGGG
ZBTB7C	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	10	21	+	11.1129	7.09e-05	0.281	GCGCCCACTGCC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	8	19	-	11.1129	7.09e-05	0.281	GCCACCACCTCC
ZBTB7C	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	33	44	+	11.1129	7.09e-05	0.281	CCGCCCCCCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	35	46	+	11.1129	7.09e-05	0.281	CCGCCCCCCGCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	35	46	-	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	35	46	-	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	59	70	+	11.1129	7.09e-05	0.281	CCGCCCCCCGCA
ZBTB7C	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	69	80	+	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	67	78	-	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	67	78	-	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	67	78	-	11.1129	7.09e-05	0.281	CCACCCACCGCC
ZBTB7C	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	71	82	-	11.1129	7.09e-05	0.281	CCGCCCCCCGCA
ZBTB7C	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	94	105	-	11.1129	7.09e-05	0.281	GCGCCCACTGCC
ELF4	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	55	66	+	8.96721	7.09e-05	0.115	ACGCCGGAAGGA
BHLHE40	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	11.1154	7.09e-05	0.288	AACACGTGAG
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	11.1154	7.09e-05	0.288	AACACGTGAG
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	11.1154	7.09e-05	0.288	AACACGTGAG
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	11.1154	7.09e-05	0.288	AACACGTGAG
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	11.1154	7.09e-05	0.288	AACACGTGAG
TBX19	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	33	52	-	9.13415	7.09e-05	1	ATTGGCATAAGCATGTGACT
TBX19	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	20	39	+	9.13415	7.09e-05	1	ATTGGCATAAGCATGTGACT
CREB3L1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	70	83	+	8.45455	7.09e-05	0.326	GTACCACGTCCTTG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	-	9.91379	7.09e-05	0.249	ATCTCGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	-	9.91379	7.09e-05	0.249	ATCTCGTGAT
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	30	44	+	-2.8	7.09e-05	0.654	ACTGAAACTGGAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	30	44	+	-2.8	7.09e-05	0.654	ACTGAAACTGGAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	100	114	-	-2.8	7.09e-05	0.654	ACTGAAACTGGAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	100	114	-	-2.8	7.09e-05	0.654	ACTGAAACTGGAAGT
CEBPA	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	59	69	-	11.449	7.09e-05	0.79	ATTGCGCCATC
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.1	86	96	-	11.449	7.09e-05	0.79	ATTTCATCACA
CEBPA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:169073251..169073365,+__1716.1.1.0	86	96	-	11.449	7.09e-05	0.79	ATTTCATCACA
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	31	45	+	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	31	45	+	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	18	32	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	18	32	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	19	33	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	19	33	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	20	34	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	20	34	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	21	35	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	21	35	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	22	36	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	22	36	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	23	37	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	23	37	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	23	37	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	23	37	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	24	38	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	24	38	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	24	38	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	24	38	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	25	39	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	26	40	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	27	41	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	28	42	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	29	43	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	30	44	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	49	63	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	50	64	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	51	65	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	52	66	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	53	67	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	54	68	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	55	69	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	56	70	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	57	71	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	57	71	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	57	71	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	58	72	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	58	72	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	58	72	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	59	73	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	60	74	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	61	75	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	62	76	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	63	77	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	64	78	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	65	79	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	65	79	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	65	79	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	65	79	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	65	79	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	66	80	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	66	80	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	66	80	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	67	81	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	68	82	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	69	83	-	10.9577	7.09e-05	0.341	AAAAAAAAAAAAAAA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	29	42	+	10.1731	7.09e-05	0.026	GCCCCTCCTCTTCC
Nr2f6(var.2)	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	30	44	+	-5.8	7.09e-05	0.998	GAGGGCAGGGGGTCG
PPARG	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	32	-	6.94444	7.09e-05	1	TTGGTGGCCGGTGACTCAGA
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	13	25	+	10.7049	7.09e-05	0.359	TTGTCTGGCCGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	55	+	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	101	+	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	101	+	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	20	30	-	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	20	30	-	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	60	70	-	10.9818	7.09e-05	0.0702	CGCCCGGGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	83	93	-	10.9818	7.09e-05	0.0702	CGCCGCAGGGG
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	28	37	+	11.1011	7.09e-05	0.871	CTGGGATGAT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	-	11.0638	7.09e-05	0.122	AACGGAAATA
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	-	11.0638	7.09e-05	0.122	AACGGAAATA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	+	11.0638	7.09e-05	0.122	AACGGAAATA
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	+	11.0638	7.09e-05	0.122	AACGGAAATA
ETV2	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	14	24	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	68	78	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	68	78	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	68	78	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	68	78	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	68	78	-	10.3607	7.09e-05	0.179	CACAGGAAGCA
Foxk1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	78	94	+	10.5455	7.09e-05	1	CTACAGTAAACAAATGA
NFATC3	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	6	15	+	11	7.09e-05	1	TCTTTCCACT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	15	31	-	3.63636	7.1e-05	0.0308	GCGGCTCCTCCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	15	31	-	3.63636	7.1e-05	0.0308	GCGGCTCCTCCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	16	32	-	3.63636	7.1e-05	0.0308	GCAGCTCCGCCCAGCCG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	29	45	-	3.63636	7.1e-05	0.0308	CGCGTCCCGCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	29	45	-	3.63636	7.1e-05	0.0308	CGCGTCCCGCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	29	45	-	3.63636	7.1e-05	0.0308	CGCGTCCCGCCCCCCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	29	45	-	3.63636	7.1e-05	0.0308	CGCGTCCCGCCCCCCCC
SP4	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	34	50	-	3.63636	7.1e-05	0.0308	CCGGCTCCGCCCGCCGC
SP4	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	65	81	+	3.63636	7.1e-05	0.0308	CCGGCTCCGCCCGCCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	54	70	-	3.63636	7.1e-05	0.0308	GCGGCTCCTCCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	54	70	-	3.63636	7.1e-05	0.0308	GCGGCTCCTCCCACGTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	59	75	-	3.63636	7.1e-05	0.0308	GCAGCTCCGCCCAGCCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	63	79	-	3.63636	7.1e-05	0.0308	GCCCCCCCGCCCCCCAT
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	64	80	-	3.63636	7.1e-05	0.0308	CAGGCCCCTCCCGCGGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	64	80	-	3.63636	7.1e-05	0.0308	CAGGCCCCTCCCGCGGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	64	80	-	3.63636	7.1e-05	0.0308	CAGGCCCCTCCCGCGGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	64	80	-	3.63636	7.1e-05	0.0308	CAGGCCCCTCCCGCGGC
CENPB	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	58	72	-	10.3462	7.1e-05	0.848	CCCGCGCACTCCGAC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	80	97	+	-14.75	7.1e-05	0.0538	GGAAGGCAGGCGCGCGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	18	35	-	-14.75	7.1e-05	0.0538	GGAAGGCAGGCGCGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	18	35	-	-14.75	7.1e-05	0.0538	GGAAGGCAGGCGCGCGGG
ELK4	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	34	44	-	11.2364	7.1e-05	0.0672	CCTCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	34	44	-	11.2364	7.1e-05	0.0672	CAGCTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	34	44	-	11.2364	7.1e-05	0.0672	CAGCTTCCTGT
ELK4	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	82	92	-	11.2364	7.1e-05	0.0672	CCTCTTCCTGT
ELK4	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	23	33	+	11.2364	7.1e-05	0.0672	CCTCTTCCTGT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	35	45	+	11.2364	7.1e-05	0.0672	CCTCTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	60	70	+	11.2364	7.1e-05	0.0672	TGGCTTCCTGC
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	60	70	+	11.2364	7.1e-05	0.0672	TGGCTTCCTGC
ELK4	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	71	81	+	11.2364	7.1e-05	0.0672	CCTCTTCCTGT
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	+	10.2131	7.1e-05	0.0589	CCCCCTGCAGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	37	49	+	10.2131	7.1e-05	0.0589	CGCCGGCCGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	37	49	+	10.2131	7.1e-05	0.0589	CGCCGGCCGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	+	10.2131	7.1e-05	0.0589	CGCCTCCCGGGGT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	97	109	+	10.2131	7.1e-05	0.0589	CGCCCGGGTGGCT
REST	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	42	62	+	4.9898	7.1e-05	0.227	TACGGGACCAAGGCCGGCTGG
Hoxb5	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	47	62	-	11.0519	7.1e-05	1	ATGGTAATTAAGGAAC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	17	28	+	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	17	28	+	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	31	42	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	38	49	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	38	49	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	38	49	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	38	49	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	73	84	+	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	87	98	-	10.7368	7.1e-05	0.034	ACCCTGCCCCCC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	28	42	-	7.98571	7.1e-05	0.117	CACACCCTCCTGGGA
ZIC3	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	39	53	-	7.98571	7.1e-05	0.117	CCTCCCCTGCAGAGA
ZIC3	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	62	76	+	7.98571	7.1e-05	0.117	CCTCCCCTGCAGAGA
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	17	31	+	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	17	31	+	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	17	31	+	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	17	31	+	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	38	52	-	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	63	77	+	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
EGR3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	84	98	-	6.22414	7.1e-05	0.0417	GCCCGGCCACGCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	10	20	+	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	30	40	-	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	34	44	-	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	49	59	+	10.4138	7.1e-05	0.0233	CCAACTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	41	51	-	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	71	81	+	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	75	85	+	10.4138	7.1e-05	0.0233	GCCCCGCCCAG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	99	109	-	10.4138	7.1e-05	0.0233	CCAACTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	99	109	-	10.4138	7.1e-05	0.0233	CCAACTCCCCC
Mafb	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	54	65	-	11.2135	7.1e-05	0.865	TTGGTGCTGACT
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	54	65	-	11.2135	7.1e-05	0.865	TTGGTGCTGACT
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	54	65	-	11.2135	7.1e-05	0.865	TTGGTGCTGACT
TCF4	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	99	-	12.0408	7.1e-05	0.422	GACACCTGCT
TCF4	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	16	25	+	12.0408	7.1e-05	0.422	GACACCTGCT
SP3	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	53	63	+	10.9756	7.1e-05	0.024	TCCGCGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	59	69	+	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	96	106	+	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	9	19	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	18	28	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	18	28	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	18	28	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	46	56	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	51	61	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	51	61	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	51	61	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	51	61	-	10.9756	7.1e-05	0.024	CCCGCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	52	62	-	10.9756	7.1e-05	0.024	TCCGCGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	60	70	-	10.9756	7.1e-05	0.024	TCCGCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	81	91	-	10.9756	7.1e-05	0.024	TCCGCGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	29	39	-	10.8077	7.1e-05	0.0177	GCCCCTCCTTG
MYBL2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	25	39	+	9.18033	7.1e-05	1	GTGCGGTTAACTGCC
MYBL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	100	114	-	9.18033	7.1e-05	1	GTGCGGTTAACTGCC
MYBL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	100	114	-	9.18033	7.1e-05	1	GTGCGGTTAACTGCC
MYBL2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	100	114	-	9.18033	7.1e-05	1	GTGCGGTTAACTGCC
MYBL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	100	114	-	9.18033	7.1e-05	1	GTGCGGTTAACTGCC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	57	68	+	10.1475	7.1e-05	0.135	AGACCGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	57	68	+	10.1475	7.1e-05	0.135	AGACCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	57	68	+	10.1475	7.1e-05	0.135	AGACCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	57	68	+	10.1475	7.1e-05	0.135	AGACCGGAAGTC
EHF	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	47	58	-	10.1475	7.1e-05	0.135	AGACCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	66	-	10.1475	7.1e-05	0.135	AGGGCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	66	-	10.1475	7.1e-05	0.135	AGGGCGGAAGTG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	66	-	10.1475	7.1e-05	0.135	AGGGCGGAAGTG
EHF	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	69	-	10.1475	7.1e-05	0.135	AGGGCGGAAGTG
EHF	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	90	-	10.1475	7.1e-05	0.135	AGGGCGGAAGTG
ETV6	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	36	45	+	11.25	7.11e-05	0.112	AGAGGAAGCG
ETV6	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	69	78	-	11.25	7.11e-05	0.112	AGAGGAAGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	44	58	+	9.25714	7.11e-05	0.122	CCGGGGGAGAAGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	22	35	-	6.19149	7.11e-05	0.101	GCCGACCTGCCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	22	35	-	6.19149	7.11e-05	0.101	GCCGACCTGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	81	94	-	6.19149	7.11e-05	0.101	GGCTCCCCGCAGAT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	81	94	-	6.19149	7.11e-05	0.101	GGCTCCCCGCAGAT
HES5	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	86	97	+	2.46552	7.11e-05	0.298	CAACAAGTGCCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	50	+	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	50	+	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	74	+	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	22	-	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	22	-	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	40	-	11.1122	7.11e-05	0.0866	CGCCCCCGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	31	42	-	11.1122	7.11e-05	0.0866	CGCCCGGCGGCG
Ar	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	15	31	-	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
Ar	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	15	31	-	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
Ar	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	15	31	-	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
Ar	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	15	31	-	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
Ar	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	15	31	-	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
Ar	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	84	100	+	6.48276	7.11e-05	0.882	AAGCCCGCCGCGTTCCC
ESR1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	92	108	+	-0.454545	7.11e-05	0.514	CCTGTCGCCATGGCCCC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	32	42	-	11.3273	7.11e-05	0.145	GTCCGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	32	42	-	11.3273	7.11e-05	0.145	GTCCGGAAGTA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	32	42	-	11.3273	7.11e-05	0.145	GTCCGGAAGTA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	32	42	-	11.3273	7.11e-05	0.145	GTCCGGAAGTA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	94	104	-	11.3273	7.11e-05	0.145	ACCCGGAAAAG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	94	104	-	11.3273	7.11e-05	0.145	ACCCGGAAAAG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	21	34	+	3.60606	7.11e-05	0.379	CAGCCCACAGGAAG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	23	36	+	3.60606	7.11e-05	0.379	CAGCCCACAGGAAG
GLIS3	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	79	92	-	3.60606	7.11e-05	0.379	CAGCCCACAGGAAG
GLIS3	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	81	94	-	3.60606	7.11e-05	0.379	CAGCCCACAGGAAG
FOSL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	13	23	+	10.4909	7.11e-05	0.227	GGTGACTAACG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	13	23	+	10.4909	7.11e-05	0.227	GGTGACTAACG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	33	44	+	11.1455	7.11e-05	0.0924	CACCCCCGGGGA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	-	11.1455	7.11e-05	0.0924	TGCCTGGGGGGG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	95	106	-	11.1455	7.11e-05	0.0924	CCCCCAAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	95	106	-	11.1455	7.11e-05	0.0924	CCCCCAAGGGCG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.3654	7.11e-05	0.141	ACAGGAAGTT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	13	30	+	-14.7632	7.11e-05	0.0538	GTAAGGGGAGGAGGCAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	13	30	+	-14.7632	7.11e-05	0.0538	GTAAGGGGAGGAGGCAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	13	30	+	-14.7632	7.11e-05	0.0538	GTAAGGGGAGGAGGCAGT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	13	30	+	-14.7632	7.11e-05	0.0538	GTAAGGGGAGGAGGCAGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	28	45	+	-14.7632	7.11e-05	0.0538	GGAGGGGAGGGGGCAGAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	70	87	+	-14.7632	7.11e-05	0.0538	GGGAGGAGGCGGGGCTGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	70	87	+	-14.7632	7.11e-05	0.0538	GGGAGGAGGCGGGGCTGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	70	87	+	-14.7632	7.11e-05	0.0538	GGGAGGAGGCGGGGCTGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	70	87	+	-14.7632	7.11e-05	0.0538	GGGAGGAGGCGGGGCTGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	28	45	-	-14.7632	7.11e-05	0.0538	GGGAGGAGGCGGGGCTGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	49	66	-	-14.7632	7.11e-05	0.0538	GGCGGGCGGGGAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	49	66	-	-14.7632	7.11e-05	0.0538	GGCGGGCGGGGAGGCGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	29	-	5.45918	7.11e-05	0.073	GGGCCCCTAGGGCG
PLAG1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	65	78	-	5.45918	7.11e-05	0.073	GGGTCCCTGTGGCG
PLAG1	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	69	82	-	5.45918	7.11e-05	0.073	CGGGGTCAGGGGTG
PLAG1	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	33	46	+	5.45918	7.11e-05	0.073	CGGGGTCAGGGGTG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	37	50	+	5.45918	7.11e-05	0.073	GGGTCCCTGTGGCG
PLAG1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	41	54	+	5.45918	7.11e-05	0.073	GTGGCCTGGTGGGG
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	9.92308	7.11e-05	0.116	CGCACGTGCT
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	9.92308	7.11e-05	0.116	CGCACGTGCT
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	9.92308	7.11e-05	0.116	CGCACGTGCT
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	9.92308	7.11e-05	0.116	CGCACGTGCT
Nkx3-1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	59	67	-	11.7091	7.11e-05	1	AACACTTAA
Nkx3-1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	59	67	-	11.7091	7.11e-05	1	AACACTTAA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	32	-	9.75862	7.11e-05	0.0554	TGCCGGGAAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	83	95	+	9.75862	7.11e-05	0.0554	TGCCGGGAAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	83	95	+	9.75862	7.11e-05	0.0554	TGCCGGGAAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	83	95	+	9.75862	7.11e-05	0.0554	TGCCGGGAAGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	83	95	+	9.75862	7.11e-05	0.0554	TGCCGGGAAGGCG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	97	109	+	9.75862	7.11e-05	0.0554	CGCCTCTGCGGCA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	11	21	+	10.8103	7.11e-05	0.0506	AGGCGCGAGCG
E2F4	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	34	44	+	10.8103	7.11e-05	0.0506	GCGCGGGGACG
E2F4	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	41	51	-	10.8103	7.11e-05	0.0506	TGGCGGGGAAA
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	64	74	+	10.8103	7.11e-05	0.0506	TGGCGGGGAAA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	64	74	+	10.8103	7.11e-05	0.0506	TGGCGGGGAAA
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	64	74	+	10.8103	7.11e-05	0.0506	TGGCGGGGAAA
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	64	74	+	10.8103	7.11e-05	0.0506	TGGCGGGGAAA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	71	81	-	10.8103	7.11e-05	0.0506	GCGCGGGGACG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	71	81	-	10.8103	7.11e-05	0.0506	GCGCGGGGACG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	88	98	-	10.8103	7.11e-05	0.0506	GCGCGGGGAGT
NHLH1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	26	-	10.7241	7.11e-05	0.14	CGCAGGTGCA
NHLH1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	98	+	10.7241	7.11e-05	0.14	CGCAGGTGCA
ZBTB7A	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	89	100	-	10.7857	7.11e-05	0.217	TGGGCCCACCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	15	26	+	10.7857	7.11e-05	0.217	TGGGCCCACCCC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	15	26	+	10.7857	7.11e-05	0.217	TGGGCCCACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	15	26	+	10.7857	7.11e-05	0.217	TGGGCCCACCCC
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	89	100	+	10.7857	7.11e-05	0.217	CGCACCCACCCC
Znf423	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	62	76	+	5.73034	7.11e-05	0.342	CGCCCCCTACGTTCC
Klf1	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	14	24	+	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	30	40	+	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	30	40	+	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	30	40	+	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	30	40	+	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	45	55	+	10.7121	7.11e-05	0.0504	CCACACACCCT
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	60	70	-	10.7121	7.11e-05	0.0504	CCACACACCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	91	101	-	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	91	101	-	10.7121	7.11e-05	0.0504	AGGCCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	26	35	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	46	55	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	53	62	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	53	62	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	53	62	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	55	64	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	55	64	+	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	53	62	-	11.0816	7.11e-05	0.0246	TCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	60	69	-	11.0816	7.11e-05	0.0246	TCTCCTCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	35	45	+	10.9593	7.11e-05	0.024	AGCCCGCCCCC
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	39	53	+	10.7658	7.11e-05	0.188	GAAGGGGAAGGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	71	85	+	10.7658	7.11e-05	0.188	CTGGGGAAAGGGTGT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	71	85	+	10.7658	7.11e-05	0.188	CTGGGGAAAGGGTGT
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	62	76	-	10.7658	7.11e-05	0.188	GAAGGGGAAGGGGAA
TAL1::TCF3	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	59	70	+	10.8539	7.11e-05	1	ATTCCATCTGTT
Bach1::Mafk	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	37	51	-	7.17105	7.11e-05	0.263	GCGGAGACTCTGCGC
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	64	78	+	7.17105	7.11e-05	0.263	GCGGAGACTCTGCGC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	75	89	-	7.17105	7.11e-05	0.263	TCCCAGAGTCAGCTC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	75	89	-	7.17105	7.11e-05	0.263	TCCCAGAGTCAGCTC
ATF7	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	67	80	+	7.37143	7.11e-05	0.213	CCGTGACGCCATCA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	30	40	+	11.3265	7.11e-05	0.381	ACTCCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	30	40	+	11.3265	7.11e-05	0.381	ACTCCCAGGAA
NFYB	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	10	24	+	10.5	7.11e-05	0.189	TCCCCAGCCAATCAT
NFYB	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	33	47	+	10.5	7.11e-05	0.189	GCGTCCGCCAATTAG
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	59	69	-	11.4545	7.12e-05	0.721	TAGCTCTCAGG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	16	-	11.2364	7.12e-05	0.0551	CGCCGGAAGCA
TFAP2A	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	34	44	+	11.2364	7.12e-05	0.0551	CCCCCCCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	78	-	11.2364	7.12e-05	0.0551	CCCCCCCGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	78	-	11.2364	7.12e-05	0.0551	CCCCCCCGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	71	81	-	11.2364	7.12e-05	0.0551	CCCCCCCGGCC
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	99	109	+	11.2364	7.12e-05	0.0551	CGCCGGAAGCA
NR3C2	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	-	4.85106	7.12e-05	1	AGGAACATGGTGTTTAT
NR3C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	+	4.85106	7.12e-05	1	AGGAACATGGTGTTTAT
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	+	4.85106	7.12e-05	1	AGGAACATGGTGTTTAT
ZBTB18	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	76	88	+	9.57143	7.12e-05	0.731	CTTGCAGTTGTTT
ZBTB18	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	76	88	+	9.57143	7.12e-05	0.731	CTTGCAGTTGTTT
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	10.9857	7.12e-05	0.111	AGCGGAAATG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	10.9857	7.12e-05	0.111	AGCGGAAATG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
ERF	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	10.9857	7.12e-05	0.111	GCCGGAAGGG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	52	63	+	8.6	7.12e-05	0.236	CGTGACGTCAGG
Creb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	52	63	+	8.6	7.12e-05	0.236	CGTGACGTCAGG
Creb5	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	52	63	-	8.6	7.12e-05	0.236	CGTGACGTCAGG
ONECUT3	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	55	68	+	9.35955	7.12e-05	1	GGAAAAACAATACT
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	18	31	+	8.04918	7.12e-05	0.185	GGCACCCCGCGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	18	31	+	8.04918	7.12e-05	0.185	GGCACCCCGCGCCG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	18	31	+	8.04918	7.12e-05	0.185	GGCACCCCGCGCCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	18	31	+	8.04918	7.12e-05	0.185	GGCACCCCGCGCCG
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	35	49	+	10.6346	7.12e-05	0.451	GGGGCGCCCTGACCC
ESR2	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	58	72	+	10.6346	7.12e-05	0.451	GGGGCACCGGGGTCT
ZIC4	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	15	29	-	10.2545	7.12e-05	0.109	ACACCCCCGCGGCCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	54	68	-	10.2545	7.12e-05	0.109	CGCCCCCCGGCATGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	54	68	-	10.2545	7.12e-05	0.109	CGCCCCCCGGCATGC
HNF1B	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	45	57	+	9.9697	7.12e-05	1	GTTATTTATTTAT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	6	18	-	9.88525	7.12e-05	0.0644	CGCCCTAACGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	+	9.88525	7.12e-05	0.0644	ACCCCACGGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	+	9.88525	7.12e-05	0.0644	CGCCCGTGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	+	9.88525	7.12e-05	0.0644	CGCCCGTGCGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	-	9.88525	7.12e-05	0.0644	GCCCCAGAGGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	-	9.88525	7.12e-05	0.0644	GCCCCAGAGGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	56	68	-	9.88525	7.12e-05	0.0644	TGCCCTGCCGGGC
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	97	109	+	9.88525	7.12e-05	0.0644	CGCCCTAACGGCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	8	28	-	9.53061	7.12e-05	0.0203	GAGGGAGGGAGCTAAGGGCGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	8	28	-	9.53061	7.12e-05	0.0203	GAGGGAGGGAGCTAAGGGCGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	8	28	-	9.53061	7.12e-05	0.0203	CGAGGGGCGGAGGGAGGGGAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	11	31	-	9.53061	7.12e-05	0.0203	GGGGGAAGGAAACAAAGACGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	40	60	-	9.53061	7.12e-05	0.0203	GGAAGTGGAGAAGCGAGAAGT
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	40	60	-	9.53061	7.12e-05	0.0203	GGAAGTGGAGAAGCGAGAAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	68	88	-	9.53061	7.12e-05	0.0203	AGAACAGGGAAGAGGGAGAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	68	88	-	9.53061	7.12e-05	0.0203	AGAACAGGGAAGAGGGAGAAA
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	91	-	9.53061	7.12e-05	0.0203	GGTGGGGGTGGGGCAGGTGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	91	111	-	9.53061	7.12e-05	0.0203	TGAGGAGTTGTGGGGGAGTGA
ZNF263	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	4	24	+	9.53061	7.12e-05	0.0203	TGAGGAGTTGTGGGGGAGTGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	8	28	+	9.53061	7.12e-05	0.0203	GAGGGGAGGGGAGAAGAGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	16	36	+	9.53061	7.12e-05	0.0203	GGAGGGGAGGGGAAGGGGCGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	21	41	+	9.53061	7.12e-05	0.0203	AATGGAGAGCAGCGAAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	21	41	+	9.53061	7.12e-05	0.0203	AATGGAGAGCAGCGAAGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	24	44	+	9.53061	7.12e-05	0.0203	GGTGGGGGTGGGGCAGGTGGG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	83	93	-	10.4727	7.12e-05	0.372	CTGCCGGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	83	93	-	10.4727	7.12e-05	0.372	CTGCCGGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	83	93	-	10.4727	7.12e-05	0.372	CTGCCGGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	83	93	-	10.4727	7.12e-05	0.372	CTGCCGGGAAT
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	96	111	+	-9.65385	7.12e-05	0.329	AGACTCTCCACTGAGG
PBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	1	12	-	10.8265	7.12e-05	1	GACTCAATCAAT
PBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	1	12	-	10.8265	7.12e-05	1	GACTCAATCAAT
Arid3b	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	58	68	+	11.0159	7.13e-05	1	CAATTAATTAT
Arid3b	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	47	57	-	11.0159	7.13e-05	1	CAATTAATTAT
Arid3b	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	47	57	-	11.0159	7.13e-05	1	CAATTAATTAT
JUN	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	19	31	-	10.2245	7.13e-05	0.317	CGGGTGACGTCAG
JUN	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	84	96	+	10.2245	7.13e-05	0.317	CGGGTGACGTCAG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	14	29	+	10.1636	7.13e-05	0.0398	CCCCGCCCCCGTCAGG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	25	40	+	10.1636	7.13e-05	0.0398	TTCCCCCCCCCCTTTC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	29	44	+	10.1636	7.13e-05	0.0398	CTCCGCCCACCGCGTG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	29	44	+	10.1636	7.13e-05	0.0398	CTCCGCCCACCGCGTG
EGR4	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	36	51	-	10.1636	7.13e-05	0.0398	CGCCTCCCTCGCACCG
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	71	86	-	10.1636	7.13e-05	0.0398	CTCCGCCCACCGCGTG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	10	24	-	10.2931	7.13e-05	0.0155	TTTCCACCCCACCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	33	47	+	10.2931	7.13e-05	0.0155	GGCCCACCCCGCGTT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	38	52	+	10.2931	7.13e-05	0.0155	TTTCCACCCCACCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	38	52	+	10.2931	7.13e-05	0.0155	TTTCCACCCCACCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	29	43	-	10.2931	7.13e-05	0.0155	GTCCTGCCCCACACG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	29	43	-	10.2931	7.13e-05	0.0155	GTCCTGCCCCACACG
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	37	51	-	10.2931	7.13e-05	0.0155	ACTCCGCCTCGCCCA
SP2	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	72	86	+	10.2931	7.13e-05	0.0155	GTCCTGCCCCACACG
SP2	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	68	82	-	10.2931	7.13e-05	0.0155	GGCCCACCCCGCGTT
SP2	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	92	106	-	10.2931	7.13e-05	0.0155	GCCGCGCCCTCCCCA
MAFG	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	91	111	+	9.69388	7.13e-05	1	GAAATGCTGTCACCGCGGTTA
KLF14	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	23	36	-	8.65517	7.13e-05	0.0365	CGGCACCCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	27	40	-	8.65517	7.13e-05	0.0365	GGCCCCGCCTTCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	58	71	+	8.65517	7.13e-05	0.0365	GGCCCCGCCTTCCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	79	92	+	8.65517	7.13e-05	0.0365	CGGCACCCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	79	92	+	8.65517	7.13e-05	0.0365	CGGCACCCCCCTTT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	88	100	+	11.6531	7.13e-05	0.182	AACAGCTGCTCAC
IRF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.0.0	67	84	+	4.93578	7.13e-05	0.626	TGACAGAGAAAGCAAAAA
NFKB1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	94	106	-	1.95918	7.13e-05	0.253	GAGGGATCCACCT
NFKB1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	9	21	+	1.95918	7.13e-05	0.253	GAGGGATCCACCT
FOXB1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	46	56	-	11.0769	7.13e-05	1	TAAATAAATAA
FOXB1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	50	60	-	11.0769	7.13e-05	1	TAAATAAATAA
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	24	38	-	10.1818	7.13e-05	0.117	CGCTCGCGTTATCAC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	24	38	-	10.1818	7.13e-05	0.117	CGCTCGCGTTATCAC
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	88	102	-	10.1818	7.13e-05	0.117	TCCCCGCGCGCTCCC
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	13	27	+	10.1818	7.13e-05	0.117	TCCCCGCGCGCTCCC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr11:118436602..118436716,-__1351.1.0.0	50	64	+	10.1818	7.13e-05	0.117	CTCTCGCGAATTTTA
ELF3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	13	25	-	8.13793	7.13e-05	0.171	ATGGAGGAAGTGA
ELF3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	90	102	+	8.13793	7.13e-05	0.171	ATGGAGGAAGTGA
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	8	23	-	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	8	23	-	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	8	23	-	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	8	23	-	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	8	23	-	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	54	69	+	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	54	69	+	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	54	69	+	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
Hnf4a	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	54	69	+	2.89091	7.13e-05	0.49	TAGGTGAAAGTTCTGA
CEBPE	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	61	70	-	11.5273	7.13e-05	0.729	CTGACGCAAT
CEBPE	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	4	13	+	11.5273	7.13e-05	0.729	CTGACGCAAT
CEBPE	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	58	67	+	11.5273	7.13e-05	0.729	CTTACACAAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	71	87	-	3.61818	7.13e-05	0.0309	TCGACACCGCCCCCCCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	71	87	-	3.61818	7.13e-05	0.0309	TCGACACCGCCCCCCCG
MYF6	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	+	10.3939	7.13e-05	1	TACAGCTGTC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	23	41	+	8.57377	7.13e-05	0.125	GCGCCGGAGGGAGGCGGCG
MEF2D	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	6	17	+	6.34545	7.13e-05	1	AATAAATATAGA
Klf12	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	9	23	+	8.14754	7.13e-05	0.0696	GACCCCGCCTCCCTC
Klf12	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	9	23	+	8.14754	7.13e-05	0.0696	CGCCCCGCCCAGCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	7	21	-	8.14754	7.13e-05	0.0696	GACCCCGCCTCCCTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	7	21	-	8.14754	7.13e-05	0.0696	GACCCCGCCTCCCTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	29	43	-	8.14754	7.13e-05	0.0696	GACGCCGCCCAACGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	29	43	-	8.14754	7.13e-05	0.0696	GACGCCGCCCAATGC
Klf12	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	94	108	+	8.14754	7.13e-05	0.0696	GACCCCGCCTCCCTC
Klf12	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	92	106	-	8.14754	7.13e-05	0.0696	GACCCCGCCTCCCTC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	3	10	+	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	3	10	+	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	104	111	+	11.4141	7.13e-05	0.741	AAGGCCAC
TBX5	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	14	21	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	14	21	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	14	21	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	14	21	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	14	21	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	32	39	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	52	59	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	79	86	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	95	102	-	10.9655	7.13e-05	0.762	AGGTGTGG
TBX4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	6	13	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	6	13	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	13	20	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	13	20	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	36	43	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	51	58	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	51	58	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	54	61	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	54	61	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	63	70	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	78	85	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	83	90	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	91	98	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	91	98	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	99	106	+	11.0408	7.13e-05	0.811	GGGTGTGA
TBX4	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	102	109	-	11.0408	7.13e-05	0.811	GGGTGTGA
TBX15	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	22	-	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	44	51	-	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	44	51	-	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	63	-	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	63	-	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	63	-	10.9038	7.13e-05	0.661	AGGTGTCA
MGA	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	8	15	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	29	36	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	29	36	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	64	71	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	64	71	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	69	76	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	69	76	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	69	76	-	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	69	76	-	11.3939	7.13e-05	0.816	TGGTGTGA
Atf1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	17	24	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	20	27	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	20	27	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	24	31	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	26	33	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	45	52	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	50	57	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	52	59	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	52	59	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	52	59	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	52	59	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	61	68	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	61	68	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	67	74	-	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	99	106	-	11.4754	7.13e-05	0.377	GTGACGTG
NR4A2	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	4	11	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	35	42	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	90	97	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	96	103	-	11.4141	7.13e-05	0.741	AAGGCCAC
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	1	8	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	1	8	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	1	8	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	2	9	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	2	9	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	2	9	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	2	9	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	13	20	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	15	22	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	18	25	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	20	27	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	20	27	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	22	29	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	22	29	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	22	29	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	22	29	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	42	49	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	42	49	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	42	49	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	42	49	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	54	61	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	56	63	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	56	63	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	56	63	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	56	63	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	76	83	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	94	101	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	103	110	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	103	110	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	103	110	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	103	110	+	10.9655	7.13e-05	0.762	AGGTGTGG
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	2	9	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	2	9	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	8	15	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	8	15	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	28	35	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	28	35	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	38	45	+	10.9038	7.13e-05	0.661	AGGTGTCA
TBX15	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	93	100	+	10.9038	7.13e-05	0.661	AGGTGTCA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	51	58	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	51	58	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	51	58	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	51	58	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	79	86	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	100	107	+	11.3939	7.13e-05	0.816	TGGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	100	107	+	11.3939	7.13e-05	0.816	TGGTGTGA
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	9	16	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	9	16	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	27	34	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	37	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	47	54	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	53	60	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	54	61	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	54	61	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	56	63	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	70	77	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	72	79	+	11.4754	7.13e-05	0.377	GTGACGTG
Atf1	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	79	86	+	11.4754	7.13e-05	0.377	GTGACGTG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	1	11	-	11.0962	7.13e-05	0.0758	ACCCGGAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	69	79	+	11.0962	7.13e-05	0.0758	ACCCGGAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	99	109	+	11.0962	7.13e-05	0.0758	CGCCCAGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	99	109	+	11.0962	7.13e-05	0.0758	CGCCCAGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	99	109	+	11.0962	7.13e-05	0.0758	CGCCCAGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	99	109	+	11.0962	7.13e-05	0.0758	CGCCCAGGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	104	114	+	11.0962	7.13e-05	0.0758	ACCCGGAGGCT
Zfx	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	31	44	-	10.6667	7.13e-05	0.0642	CCGGGCCGAGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	39	52	-	10.6667	7.13e-05	0.0642	GGCGCCGCGGCCCG
Zfx	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	63	76	+	10.6667	7.13e-05	0.0642	GGCGCCGCGGCCCG
PAX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	13	+	9.96226	7.13e-05	1	CAATTAATTA
PAX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	13	+	9.96226	7.13e-05	1	CAATTAATTA
PAX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	48	57	-	9.96226	7.13e-05	1	CAATTAATTA
PAX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	48	57	-	9.96226	7.13e-05	1	CAATTAATTA
PAX3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	58	67	+	9.96226	7.13e-05	1	CAATTAATTA
POU5F1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	3	11	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	3	11	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	3	11	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	3	11	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	5	13	-	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	5	13	-	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	20	28	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	20	28	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	25	33	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	25	33	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	30	38	+	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	29	37	-	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	99	107	-	11.1858	7.14e-05	1	GATGCAAAT
POU5F1B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	99	107	-	11.1858	7.14e-05	1	GATGCAAAT
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	39	58	+	3.54128	7.14e-05	0.0657	CCCCCCACCGTACACTAACA
GLIS3	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	25	38	-	3.59091	7.14e-05	0.379	CACCCCCTCCAGAG
GLIS3	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	77	90	+	3.59091	7.14e-05	0.379	CACCCCCTCCAGAG
HSF4	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	79	91	+	10.6463	7.14e-05	1	GACTGGAACTTTC
SP8	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	14	25	-	10.7237	7.14e-05	0.0341	GACACCGCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	65	76	-	10.7237	7.14e-05	0.0341	GACACCGCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	65	76	-	10.7237	7.14e-05	0.0341	GACACCGCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	90	101	+	10.7237	7.14e-05	0.0341	GACACCGCCCCT
ZIC3	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	3	17	-	7.97143	7.14e-05	0.117	CCCCACCCCCTGAGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	47	61	-	7.97143	7.14e-05	0.117	TCCCCCCTCTGGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	47	61	-	7.97143	7.14e-05	0.117	TCCCCCCTCTGGCGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	67	81	+	7.97143	7.14e-05	0.117	CGCCCCCCTGGGCGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	67	81	+	7.97143	7.14e-05	0.117	CGCCCCCCTGGGCGA
ERG	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	11.3091	7.14e-05	0.134	ACCGGAAGGT
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	58	76	+	10.4355	7.14e-05	0.15	GGGCGCTGGCGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	58	76	+	10.4355	7.14e-05	0.15	GGGCGCTGGCGGGCGGGGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	37	51	+	6.2069	7.14e-05	0.0417	CGCCGCCGCCGCTGT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	37	51	+	6.2069	7.14e-05	0.0417	CGCCGCCGCCGCTGT
Rarb(var.2)	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	87	103	-	-2.63636	7.14e-05	0.861	GGGCGGCCGTGAGGTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	12	28	+	-2.63636	7.14e-05	0.861	GGGCGGCCGTGAGGTCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	12	28	+	-2.63636	7.14e-05	0.861	GGGCGGCCGTGAGGTCA
USF2	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	16	-	11.2449	7.14e-05	0.154	GCCACGTGCTC
USF2	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	79	+	11.2449	7.14e-05	0.154	ACCACGTGCCT
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	5	15	+	10.9512	7.14e-05	0.0241	CACACACCCCA
ZNF410	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	54	70	+	-3.29091	7.14e-05	1	ACCATCCCTTCACACCC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	28	37	+	9.47273	7.14e-05	0.254	GACACCTGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	28	37	+	9.47273	7.14e-05	0.254	GACACCTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	28	37	+	9.47273	7.14e-05	0.254	GACACCTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	28	37	+	9.47273	7.14e-05	0.254	GACACCTGAT
NRF1	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	10	20	+	9.92727	7.14e-05	0.0212	GCGGCTGCGAA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	15	25	-	9.92727	7.14e-05	0.0212	CAGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	15	25	-	9.92727	7.14e-05	0.0212	CAGCAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	15	25	-	9.92727	7.14e-05	0.0212	CAGCAGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	15	25	-	9.92727	7.14e-05	0.0212	CAGCAGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	36	46	+	9.92727	7.14e-05	0.0212	GCGGCTGCGAA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	36	46	+	9.92727	7.14e-05	0.0212	GCGGCTGCGAA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	51	61	+	9.92727	7.14e-05	0.0212	CAGGCTGCGCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	51	61	+	9.92727	7.14e-05	0.0212	CAGGCTGCGCA
NRF1	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	69	79	-	9.92727	7.14e-05	0.0212	GCGGCTGCGAA
NRF1	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	95	105	-	9.92727	7.14e-05	0.0212	GCGGCTGCGAA
FOXP1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	53	67	+	10.9437	7.14e-05	0.341	CGCGGGTAAACACCG
FOXP1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	48	62	-	10.9437	7.14e-05	0.341	CGCGGGTAAACACCG
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	76	90	-	10.9437	7.14e-05	0.341	CGCGGGTAAACACCG
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	54	65	-	11.22	7.14e-05	1	TATTTATACTGG
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	46	57	+	11.22	7.14e-05	1	TATTTATACTGG
MAFK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	18	32	-	11	7.14e-05	1	CTGGTTCAGCAGCTT
MAFK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	18	32	-	11	7.14e-05	1	CTGGTTCAGCAGCTT
Gabpa	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	45	55	+	10.8033	7.14e-05	0.07	CCGGAAGTTTA
Gabpa	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	60	70	-	10.8033	7.14e-05	0.07	CCGGAAGTTTA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	-	9.74138	7.14e-05	0.0554	CGCCCGCCCGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	101	113	-	9.74138	7.14e-05	0.0554	AGCCGCCGGGGGC
ETS1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.3276	7.15e-05	0.109	GGCGGAAGTG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	11.3276	7.15e-05	0.109	CCCGGATGTG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	11.3276	7.15e-05	0.109	CCCGGATGTG
Sox6	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	35	44	-	11.8286	7.15e-05	0.878	CTATTGTTCT
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	11.2	7.15e-05	0.119	CCCGGAAGCA
ETV5	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	11.2	7.15e-05	0.119	CCCGGAAGCA
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	54	67	-	5.17347	7.15e-05	0.371	GGGCAACCCGCCAG
NFIC::TLX1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	48	61	+	5.17347	7.15e-05	0.371	GGGCAACCCGCCAG
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	30	39	-	10.9184	7.15e-05	0.972	CCAAGGTTAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	30	39	-	10.9184	7.15e-05	0.972	CCAAGGTTAC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	74	83	+	10.9184	7.15e-05	0.972	CCAAGGTTAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	74	83	+	10.9184	7.15e-05	0.972	CCAAGGTTAC
Klf4	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	32	41	+	10.6327	7.15e-05	0.0253	CGGGCGGGGT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	84	93	-	10.6327	7.15e-05	0.0253	CGGGCGGGGT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	6	16	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	6	16	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	6	16	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	12	22	+	10.9636	7.15e-05	0.0702	CCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	41	51	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	41	51	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	82	92	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	87	97	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	89	99	+	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	99	109	+	10.9636	7.15e-05	0.0702	CGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	99	109	+	10.9636	7.15e-05	0.0702	CGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	99	109	+	10.9636	7.15e-05	0.0702	CGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	99	109	+	10.9636	7.15e-05	0.0702	CGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	18	28	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	23	33	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	23	33	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	38	48	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	87	97	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	103	-	10.9636	7.15e-05	0.0702	CCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	103	113	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.0.0	103	113	-	10.9636	7.15e-05	0.0702	CGCCGCCGGCC
HEY2	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	90	99	+	10.8621	7.15e-05	0.207	GACACGCGTG
GSX1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	46	55	+	9.5873	7.15e-05	1	CCCCATTAAA
ELF4	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	60	71	+	8.95082	7.15e-05	0.115	ACTCCGGAAATA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	41	-	8.95082	7.15e-05	0.115	ACTCCGGAAATA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	41	-	8.95082	7.15e-05	0.115	ACTCCGGAAATA
ELF4	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	55	-	8.95082	7.15e-05	0.115	ACTCCGGAAATA
ELF4	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	65	-	8.95082	7.15e-05	0.115	ATTCCGGAAGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	2	15	+	10.1538	7.15e-05	0.0262	GGTCCGCCTCCTTC
EGR1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	11	24	+	10.1538	7.15e-05	0.0262	GTTCCTCCGACTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	59	72	+	10.1538	7.15e-05	0.0262	CGGCCGCCGCCGGT
EGR1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	91	104	-	10.1538	7.15e-05	0.0262	GTTCCTCCGACTCC
KLF16	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	9	19	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	18	28	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	18	28	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	18	28	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	20	30	-	10.3966	7.15e-05	0.0233	TACCCACCCAC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	46	56	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	59	69	+	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	51	61	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	51	61	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	51	61	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	51	61	-	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	85	95	+	10.3966	7.15e-05	0.0233	TACCCACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	96	106	+	10.3966	7.15e-05	0.0233	CCCGCGCCCCT
ELF1	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	13	24	+	8.87273	7.15e-05	0.125	TAGGCGGAAATG
REST	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	17	37	+	4.96939	7.15e-05	0.227	CCCAGGGCCAGGGCCCGCCCC
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	60	74	+	8.5082	7.15e-05	0.477	TTGACTCTGCAGTCC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	74	86	+	10.1967	7.15e-05	0.0589	CGCCCCACAGGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	20	32	-	10.1967	7.15e-05	0.0589	CGCCGGCCGGGGA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	34	45	-	10.4655	7.15e-05	0.365	CCGCCCCCCCAC
ZBTB7B	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	71	82	-	10.4655	7.15e-05	0.365	CCGCCCCCCCAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	33	44	+	10.4655	7.15e-05	0.365	CCGCCCCCCCAC
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	70	81	+	10.4655	7.15e-05	0.365	CCGCCCCCCCAC
HOXA10	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	48	58	-	10.8302	7.15e-05	1	AGCAATAAAGC
HOXA10	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	48	58	-	10.8302	7.15e-05	1	AGCAATAAAGC
FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	36	45	+	11.0426	7.15e-05	0.122	GCCGGAAACC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	47	59	-	10.6885	7.15e-05	0.359	TGGGCTGCCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	18	30	+	10.6885	7.15e-05	0.359	CGGGCTGACAGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	18	30	+	10.6885	7.15e-05	0.359	CGGGCTGACAGCT
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	33	44	+	11.1818	7.15e-05	0.0577	CACCCCCGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	61	72	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	61	72	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	61	72	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	61	72	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	102	+	11.1818	7.15e-05	0.0577	CGCCCGGGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	102	+	11.1818	7.15e-05	0.0577	CGCCCGGGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	96	107	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	96	107	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	96	107	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	96	107	-	11.1818	7.15e-05	0.0577	CCGCCCCAGGCA
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	1	15	+	10.7568	7.15e-05	0.188	GTCGGGGAGGGGCCA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	100	114	-	10.7568	7.15e-05	0.188	GTCGGGGAGGGGCCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	91	110	-	3.53211	7.16e-05	0.0658	CCCCTACACACACAGAGACA
USF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	4	14	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	4	14	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	17	27	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	17	27	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	48	58	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	48	58	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	49	59	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	49	59	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	74	84	-	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	22	+	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	41	+	10.9184	7.16e-05	0.219	GTCACGTGGCG
USF1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	111	+	10.9184	7.16e-05	0.219	GTCACGTGGCG
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	46	56	-	11.2241	7.16e-05	0.285	GCCTGTGGCTC
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.1.0	98	108	-	11.1061	7.16e-05	0.382	GGCGGCCATTA
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	98	108	-	11.1061	7.16e-05	0.382	GGCGGCCATTA
Hes2	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	14	26	+	10.6667	7.16e-05	0.56	TTGTGGCAAGTGC
Hes2	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	89	101	-	10.6667	7.16e-05	0.56	TTGTGGCAAGTGC
Foxq1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	61	71	+	11.4286	7.16e-05	1	TGATGTTTAGA
FOS	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	42	52	-	11.383	7.16e-05	0.259	TGTTAGTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	63	73	+	11.383	7.16e-05	0.259	TGTTAGTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	63	73	+	11.383	7.16e-05	0.259	TGTTAGTCATT
FOS	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	80	90	-	11.383	7.16e-05	0.259	TCTGATTCACT
Bcl6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	6	19	+	10.6774	7.16e-05	0.471	ATTCCTCAAAACCC
Bcl6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	6	19	+	10.6774	7.16e-05	0.471	ATTCCTCAAAACCC
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	84	97	+	10.6774	7.16e-05	0.471	CCTCCTGGAAAACT
Nr5a2	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	37	51	+	10.069	7.16e-05	0.504	GGCCTCAGGGTCAGT
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	29	43	-	10.069	7.16e-05	0.504	AGAGCCAAGGTTACG
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	70	84	+	10.069	7.16e-05	0.504	AGAGCCAAGGTTACG
Nr5a2	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	64	78	-	10.069	7.16e-05	0.504	GGCCTCAGGGTCAGT
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	15	31	+	9.66327	7.16e-05	0.368	AGGGGAGAGGGAGGAGA
HLTF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	51	60	-	8.67073	7.16e-05	1	CACCTTATAT
HLTF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	51	60	-	8.67073	7.16e-05	1	CACCTTATAT
Dmbx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	47	63	+	11.2632	7.16e-05	1	GGGGAGGGATTAGGAGT
Dmbx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	47	63	+	11.2632	7.16e-05	1	GGGGAGGGATTAGGAGT
EBF1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	99	112	-	8.98361	7.16e-05	0.365	AGTCCCAAGCGGCT
HOXC13	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	20	30	+	10.5161	7.16e-05	1	AATCGTAAAAC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	17	32	-	-2.46939	7.16e-05	0.877	AAGGCCATGGGGCCAG
E2F4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	10	20	-	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	22	32	-	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	24	34	-	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	35	45	+	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	43	53	+	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	62	72	-	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	69	79	-	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	95	105	+	10.7759	7.16e-05	0.0506	GGGCGGGGGCA
Tcf12	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	11	21	-	11.6327	7.16e-05	0.189	CACAGGTGCGG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	94	104	+	11.6327	7.16e-05	0.189	CACAGGTGCGG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	94	104	+	11.6327	7.16e-05	0.189	CACAGGTGCGG
Tcf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	94	104	+	11.6327	7.16e-05	0.189	CACAGGTGCGG
Tcf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	94	104	+	11.6327	7.16e-05	0.189	CACAGGTGCGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	98	108	+	11.6327	7.16e-05	0.189	GACAGGTGAAG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	98	108	+	11.6327	7.16e-05	0.189	GACAGGTGAAG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	98	108	+	11.6327	7.16e-05	0.189	GACAGGTGAAG
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	98	108	+	11.6327	7.16e-05	0.189	GACAGGTGAAG
E2F1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	16	27	+	10.8852	7.16e-05	0.447	TGAGGCGCCACG
E2F1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	69	80	-	10.8852	7.16e-05	0.447	TGAGGCGCCACG
E2F1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	88	99	-	10.8852	7.16e-05	0.447	TGAGGCGCCACG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	21	34	-	8.03279	7.16e-05	0.185	TCCCTCCCGCGCCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	21	34	-	8.03279	7.16e-05	0.185	TCCCTCCCGCGCCG
GLIS2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	81	94	+	8.03279	7.16e-05	0.185	TCCCTCCCGCGCCG
Myc	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	25	34	+	11.8364	7.16e-05	0.473	ACATGTGTTC
RARA(var.2)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	32	48	-	3.01639	7.16e-05	0.563	AGGCCAGGGCGTGGTCA
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	67	83	+	3.01639	7.16e-05	0.563	AGGCCAGGGCGTGGTCA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	75	87	+	1.93878	7.16e-05	0.253	AGGGTATTCCCAG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	75	87	+	1.93878	7.16e-05	0.253	AGGGTATTCCCAG
Nr2f6	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	3	16	-	8.57576	7.16e-05	0.408	GGGAGTAAAGGTCG
Nr2f6	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	99	112	+	8.57576	7.16e-05	0.408	GGGAGTAAAGGTCG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	+	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	+	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	+	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	+	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	-	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	+	10.4727	7.16e-05	0.227	CATGAGTCAGG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	-	10.4727	7.16e-05	0.227	CATGAGTCAGG
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	41	51	-	11.2653	7.16e-05	1	TTGTTATCTGT
Gata1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	41	51	-	11.2653	7.16e-05	1	TTGTTATCTGT
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	41	51	-	11.2653	7.16e-05	1	TTGTTATCTGT
Gata1	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	88	98	+	11.2653	7.16e-05	1	TTGTTATCTGT
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	82	93	-	2.86885	7.16e-05	0.598	TGATAAGTGCCA
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.0.0	82	93	-	2.86885	7.16e-05	0.598	TGATAAGTGCCA
PAX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	36	52	+	5.38182	7.17e-05	0.619	GGTCACGCTTGCAGGGC
PAX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	36	52	+	5.38182	7.17e-05	0.619	GGTCACGCTTGCAGGGC
MAFF	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	57	+	10.7778	7.17e-05	0.965	GGTGAGTCAGCTTTTGGT
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	+	11.102	7.17e-05	0.0866	AGCCCTACGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	+	11.102	7.17e-05	0.0866	AGCCCTACGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	-	11.102	7.17e-05	0.0866	AGCCCTACGGCG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	100	111	-	11.102	7.17e-05	0.0866	TGCCCCAAGGTT
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	30	41	-	2.32653	7.17e-05	1	TGTCAGCTCTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	30	41	-	2.32653	7.17e-05	1	TGTCAGCTCTCA
IRF2	WILDTYPE__mrna.noflip.NA__chr11:118436602..118436716,-__1351.1.0.0	35	52	+	4.91743	7.17e-05	0.626	CGAGAGTGGAAGCAACTC
MLX	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	59	68	-	9.95714	7.17e-05	0.309	ATGACGTGAC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	69	83	+	10.3269	7.17e-05	0.848	CCCGGCTACTCAGAA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	69	83	+	10.3269	7.17e-05	0.848	CCCGGCTACTCAGAA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	86	100	+	10.3269	7.17e-05	0.848	CCCGGCTACTCAGAA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	86	100	+	10.3269	7.17e-05	0.848	CCCGGCTACTCAGAA
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	11.2273	7.17e-05	0.585	GGCACGTGGT
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	35	49	-	5.80734	7.17e-05	1	GGGCCATCAGGTTCT
RXRA::VDR	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	35	49	-	5.80734	7.17e-05	1	GGGCCATCAGGTTCT
Gmeb1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	37	53	-	10.7105	7.17e-05	0.668	GTCTGGACGTCCGCGAG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	37	53	-	10.7105	7.17e-05	0.668	GTCTGGACGTCCGCGAG
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	96	111	+	5.8	7.17e-05	0.39	AATAACCATGACAATG
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	96	111	+	5.8	7.17e-05	0.39	AATAACCATGACAATG
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	96	111	+	5.8	7.17e-05	0.39	AATAACCATGACAATG
RFX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	96	111	+	5.8	7.17e-05	0.39	AATAACCATGACAATG
INSM1	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	35	46	+	9.72449	7.17e-05	0.189	TGTCAGCGGCAG
INSM1	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	69	80	-	9.72449	7.17e-05	0.189	TGTCAGCGGCAG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	87	100	-	3.57576	7.17e-05	0.379	GGGCCCCCACATGG
TFEC	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	1	10	+	11.3171	7.17e-05	0.185	GACACATGAT
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	70	79	+	11.3171	7.17e-05	0.185	GACACATGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	70	79	+	11.3171	7.17e-05	0.185	GACACATGAT
NFYB	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	4	18	-	10.4808	7.17e-05	0.19	CCCAGCACCAATCGC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	57	69	-	8.06061	7.17e-05	0.264	GGGGGCCGCCCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	57	69	-	8.06061	7.17e-05	0.264	GGGGGCCGCCCCC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	57	69	-	8.06061	7.17e-05	0.264	GGGGGCCGCCCCC
NFKB2	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	66	78	-	8.06061	7.17e-05	0.264	GAGGTATTCCCCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	69	+	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	69	+	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	69	+	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	69	+	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	69	+	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	58	-	9.86885	7.17e-05	0.0644	TCCCGCCCAGGCA
Dlx1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	9.90351	7.17e-05	1	GCCAATTAGC
ZNF143	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	23	38	+	1.2069	7.17e-05	0.4	GTCCCACAACGCTCTG
ZNF143	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	77	92	-	1.2069	7.17e-05	0.4	GTCCCACAACGCTCTG
Nr2f6(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	66	80	+	-5.85714	7.17e-05	0.998	AAGCGCCCAAGGTCA
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	81	92	-	8.85455	7.17e-05	0.125	ACTCAGGAAGTG
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	81	92	-	8.85455	7.17e-05	0.125	ACTCAGGAAGTG
ELK4	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	68	-	11.2182	7.17e-05	0.0676	GAACTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	66	76	-	11.2182	7.17e-05	0.0676	GCGTTTCCGCT
ELK4	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	13	23	+	11.2182	7.17e-05	0.0676	GCGTTTCCGCT
ELK4	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	47	57	+	11.2182	7.17e-05	0.0676	GAACTTCCTGT
ETV2	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	50	60	+	10.3443	7.17e-05	0.18	AAGCGGAAAGG
ETV2	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	55	65	-	10.3443	7.17e-05	0.18	AAGCGGAAAGG
NKX2-3	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	22	31	-	11.5962	7.17e-05	1	CCCACTTGGA
NKX2-3	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	84	93	+	11.5962	7.17e-05	1	CCCACTTGGA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	19	34	-	6.53448	7.17e-05	0.354	AGTTCCCATGACATCA
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	19	34	-	6.53448	7.17e-05	0.354	AGTTCCCATGACATCA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	2	12	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	2	12	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	11	21	+	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	23	33	-	10.7885	7.17e-05	0.0178	GTACCGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	29	39	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	29	39	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	29	39	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	31	41	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	31	41	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	41	51	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	32	42	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	34	44	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	40	50	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	51	61	+	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	61	71	+	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	61	71	+	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	54	64	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	54	64	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	65	75	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	71	81	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	73	83	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	74	84	+	10.7885	7.17e-05	0.0178	GCACCGCCTCC
SP1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	68	78	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	82	92	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	82	92	+	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	92	102	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	92	102	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	92	102	-	10.7885	7.17e-05	0.0178	CTTCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	94	104	-	10.7885	7.17e-05	0.0178	GCACCGCCTCC
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	52	61	-	11.2295	7.17e-05	0.905	CAAGCTGCCA
Myb	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	52	61	-	11.2295	7.17e-05	0.905	CAAGCTGCCA
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	52	61	-	11.2295	7.17e-05	0.905	CAAGCTGCCA
Myb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	71	80	+	11.2295	7.17e-05	0.905	CAAGCTGCCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	19	32	+	8.63793	7.17e-05	0.0365	GGTCGCGCCCAATC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	19	32	+	8.63793	7.17e-05	0.0365	GGTCGCGCCCAATC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	19	32	+	8.63793	7.17e-05	0.0365	GGTCGCGCCCAATC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.1.0	27	40	+	8.63793	7.17e-05	0.0365	GTCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	27	40	+	8.63793	7.17e-05	0.0365	GTCCCCGCCCCCGG
KLF14	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	32	45	+	8.63793	7.17e-05	0.0365	TGCCCCTCCCCTCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	22	35	-	8.63793	7.17e-05	0.0365	ACACCCGCCCACAT
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	38	51	-	8.63793	7.17e-05	0.0365	ACACCCGCCCACAT
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	64	77	+	8.63793	7.17e-05	0.0365	ACACCCGCCCACAT
KLF14	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	72	85	+	8.63793	7.17e-05	0.0365	AGCCCCGCCTCTCG
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	80	93	+	8.63793	7.17e-05	0.0365	ACACCCGCCCACAT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	31	45	+	8.13115	7.17e-05	0.0698	GGGCACGCTCTTTCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	31	45	+	8.13115	7.17e-05	0.0698	GGGCACGCTCTTTCC
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	30	41	+	10.5909	7.18e-05	0.109	CCGCTTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	30	41	+	10.5909	7.18e-05	0.109	CCGCTTCCGCAG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	79	90	+	10.5909	7.18e-05	0.109	CGGCGTCCGTCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	79	90	+	10.5909	7.18e-05	0.109	CGGCGTCCGTCG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	79	90	+	10.5909	7.18e-05	0.109	CGGCGTCCGTCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	79	90	+	10.5909	7.18e-05	0.109	CGGCGTCCGTCG
NR1H2::RXRA	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	26	42	-	-5.58427	7.18e-05	1	CAGGGTCAGAGGCCGCC
NR1H2::RXRA	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	73	89	+	-5.58427	7.18e-05	1	CAGGGTCAGAGGCCGCC
NFAT5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	76	85	-	10.9516	7.18e-05	1	GTTTTCCAAG
TP63	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	96	113	-	-2.24138	7.18e-05	0.937	AACGTGCTGGATCAGGAA
TP63	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	96	113	-	-2.24138	7.18e-05	0.937	AACGTGCTGGATCAGGAA
EGR3	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	25	39	+	6.18966	7.18e-05	0.0417	TGCCGGCCACGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	47	61	+	6.18966	7.18e-05	0.0417	CCCCGCCCCCGGCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	47	61	+	6.18966	7.18e-05	0.0417	CCCCGCCCCCGGCCC
TCF4	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	84	93	+	12.0204	7.18e-05	0.422	GACACCTGCA
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	62	73	-	10.4808	7.18e-05	0.309	AAAGATGGTCTC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr19:50887484..50887598,+__1410.1.0.0	99	113	-	10.1667	7.18e-05	0.117	CTCCCGCGCGCGCAA
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	110	+	10.1667	7.18e-05	0.117	CGCCCGCGCGGCCGG
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	46	55	+	11.5172	7.18e-05	0.859	TCCAGCTGGT
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	46	55	+	11.5172	7.18e-05	0.859	TCCAGCTGGT
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	46	55	+	11.5172	7.18e-05	0.859	TCCAGCTGGT
E2F6	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	22	32	-	11	7.18e-05	0.0723	TGGTGGGAAGC
E2F6	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	47	57	-	11	7.18e-05	0.0723	CGGAGGGAAAG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	70	80	-	11	7.18e-05	0.0723	CGGAGGGAAAG
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	18	28	+	11	7.18e-05	0.0723	CGGAGGGAAAG
E2F6	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	83	93	+	11	7.18e-05	0.0723	TGGTGGGAAGC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	12	21	+	11.1923	7.18e-05	0.112	AGCGGAAGAG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	12	21	+	11.1923	7.18e-05	0.112	AGCGGAAGAG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	12	21	+	11.1923	7.18e-05	0.112	AGCGGAAGAG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	12	21	+	11.1923	7.18e-05	0.112	AGCGGAAGAG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	12	21	+	11.1923	7.18e-05	0.112	AGCGGAAGAG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	28	37	-	11.1923	7.18e-05	0.112	AGCGGAAGAG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	15	25	+	11.0769	7.18e-05	0.0758	AGCCCAGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	7	17	-	11.0769	7.18e-05	0.0758	TGCCCCAGGGG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	7	17	-	11.0769	7.18e-05	0.0758	TGCCCCAGGGG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	82	92	+	11.0769	7.18e-05	0.0758	CCCCGCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	82	92	+	11.0769	7.18e-05	0.0758	CCCCGCAGGCG
JDP2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	17	28	+	6.63265	7.18e-05	0.216	TCTGATGTCATG
JDP2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	17	28	+	6.63265	7.18e-05	0.216	TCTGATGTCATG
INSM1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	41	52	-	9.71429	7.18e-05	0.189	GGGAAGGGGGTT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	47	60	-	9.58571	7.18e-05	0.273	CGGCCACGTGAGGA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	47	60	-	9.58571	7.18e-05	0.273	CGGCCACGTGAGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	66	76	-	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	66	76	-	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	66	76	-	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	66	76	-	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	66	76	-	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	79	89	+	10.7869	7.18e-05	0.07	CAGGAAGCAGC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	41	51	+	10.697	7.18e-05	0.0508	GGTCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	41	51	+	10.697	7.18e-05	0.0508	GGTCCCGCCCT
SP2	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	29	43	-	10.2759	7.18e-05	0.0156	TCCGCGCCTCCCCGC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	33	47	-	10.2759	7.18e-05	0.0156	ACCCCTCCTTCCCGA
SP2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	33	47	-	10.2759	7.18e-05	0.0156	CTCCTTCCTCCTCCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	51	65	+	10.2759	7.18e-05	0.0156	GACCCGCCCTGGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	51	65	+	10.2759	7.18e-05	0.0156	GACCCGCCCTGGTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	67	81	+	10.2759	7.18e-05	0.0156	CTTCCTCCCCTCCAG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	67	81	+	10.2759	7.18e-05	0.0156	CTTCCTCCCCTCCAG
SP2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	68	82	+	10.2759	7.18e-05	0.0156	CTCCTTCCTCCTCCC
SP2	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	72	86	+	10.2759	7.18e-05	0.0156	TCCGCGCCTCCCCGC
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	59	71	-	10.75	7.18e-05	1	GCTATGCAAATAA
TP53	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	50	-	6.36735	7.18e-05	0.979	AGCACGCCGGGGCGTGGC
TP53	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	65	82	+	6.36735	7.18e-05	0.979	AGCACGCCGGGGCGTGGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	28	42	-	10.2364	7.18e-05	0.109	CGCCCCCCCTCGCGC
ZIC4	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	32	46	-	10.2364	7.18e-05	0.109	GGCCGCCCTTTGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	36	50	-	10.2364	7.18e-05	0.109	TCCACCCCGCCGCCC
ZIC4	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	69	83	-	10.2364	7.18e-05	0.109	CCCCGCCCGCCGGTC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	91	105	-	10.2364	7.18e-05	0.109	CCCCCCCCCCCGTGT
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	10	24	+	10.2364	7.18e-05	0.109	CCCCCCCCCCCGTGT
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	10	24	+	10.2364	7.18e-05	0.109	CCCCCCCCCCCGTGT
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	10	24	+	10.2364	7.18e-05	0.109	CCCCCCCCCCAGTGT
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	14	28	+	10.2364	7.18e-05	0.109	CGCCCCCCCTCGCGC
ZIC4	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	69	83	+	10.2364	7.18e-05	0.109	GGCCGCCCTTTGCGC
ZIC4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	95	109	+	10.2364	7.18e-05	0.109	CCCCGCCCGCCGGTC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	19	32	+	5.42857	7.19e-05	0.0736	GGGGGTGAGGGCGG
E2F8	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	20	31	-	4.53659	7.19e-05	0.631	TTTTCCGACAAA
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	84	95	+	4.53659	7.19e-05	0.631	TTTTCCGACAAA
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	84	95	+	4.53659	7.19e-05	0.631	TTTTCCGACAAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	84	95	+	4.53659	7.19e-05	0.631	TTTTCCGACAAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	84	95	+	4.53659	7.19e-05	0.631	TTTTCCGACAAA
SPI1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	32	-	2.63636	7.19e-05	0.236	AAGTACAGGAAGTG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	67	80	-	2.63636	7.19e-05	0.236	TGAAAGAAGAACTG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	-	9.72414	7.19e-05	0.0554	AGCCCGGAAGGGC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	93	105	-	9.72414	7.19e-05	0.0554	GGCCCCGGCGGGG
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	12	21	+	11.0612	7.19e-05	0.0247	GTCACACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	12	21	+	11.0612	7.19e-05	0.0247	GTCACACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	50	59	-	11.0612	7.19e-05	0.0247	GTCACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	50	59	-	11.0612	7.19e-05	0.0247	GTCACACCCA
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	47	56	+	11.4808	7.19e-05	0.455	TAACCGCAGT
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	5	14	+	10.5688	7.19e-05	0.0553	GCCCCCCACC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	17	26	+	10.5688	7.19e-05	0.0553	GCCCCCCACC
ZNF740	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	27	36	+	10.5688	7.19e-05	0.0553	GCCCCCCACC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	60	69	-	10.5688	7.19e-05	0.0553	GCCCCCCACC
ZNF740	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	79	88	-	10.5688	7.19e-05	0.0553	GCCCCCCACC
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	42	52	-	11.1379	7.19e-05	0.583	AAACCACAGAT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	11	25	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	11	25	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	11	25	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	16	30	-	9.22857	7.19e-05	0.122	GCGGGGGAGGGGGGG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	49	63	+	9.22857	7.19e-05	0.122	GCGGGGGAGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	36	50	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	36	50	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	36	50	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	36	50	-	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	55	69	+	9.22857	7.19e-05	0.122	GCGGGGGAGGGGGGG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	46	60	-	9.22857	7.19e-05	0.122	GCGGGGGAGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	52	66	-	9.22857	7.19e-05	0.122	GCGGGGGAGGGGGGG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	89	103	+	9.22857	7.19e-05	0.122	GCCGGGCAGGGGTTA
Npas2	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	-	11.8197	7.19e-05	0.333	CCCACGTGCG
Npas2	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	+	11.8197	7.19e-05	0.333	CCCACGTGCG
Npas2	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	-	11.8197	7.19e-05	0.333	CCCACGTGCG
Npas2	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	+	11.8197	7.19e-05	0.333	CCCACGTGCG
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	53	64	-	10.4483	7.19e-05	0.365	GCACCCACCGTT
SP3	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	24	34	+	10.9431	7.19e-05	0.0242	CCCACGCCGAC
NR3C1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	+	5	7.19e-05	1	ATAAACACCATGTTCCT
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	-	5	7.19e-05	1	ATAAACACCATGTTCCT
NR3C1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	-	5	7.19e-05	1	ATAAACACCATGTTCCT
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	34	43	+	11.1111	7.19e-05	0.182	GTAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	34	43	+	11.1111	7.19e-05	0.182	GTAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	34	43	+	11.1111	7.19e-05	0.182	GTAGGGGTGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	34	43	+	11.1111	7.19e-05	0.182	GTAGGGGTGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	34	43	+	11.1111	7.19e-05	0.182	GTAGGGGTGG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	61	70	-	11.1111	7.19e-05	0.182	GTAGGGGTGG
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	4	14	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	4	14	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	17	27	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	17	27	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	30	40	-	11.2245	7.19e-05	0.154	TCCACGTGGCC
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	30	40	-	11.2245	7.19e-05	0.154	TCCACGTGGCC
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	30	40	-	11.2245	7.19e-05	0.154	TCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	30	40	-	11.2245	7.19e-05	0.154	TCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	30	40	-	11.2245	7.19e-05	0.154	TCCACGTGGCC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	48	58	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	48	58	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	49	59	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	49	59	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	74	84	-	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	22	+	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	41	+	11.2245	7.19e-05	0.154	GTCACGTGGCG
USF2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	111	+	11.2245	7.19e-05	0.154	GTCACGTGGCG
EGR4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	4	19	-	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	33	48	-	10.1455	7.19e-05	0.0398	CCCTGCCCCCCCCCCT
EGR4	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	49	64	+	10.1455	7.19e-05	0.0398	CCCCGCCCCCACGCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	51	66	-	10.1455	7.19e-05	0.0398	CCCCGCCCCCACGCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	96	111	+	10.1455	7.19e-05	0.0398	TCGCGCCCACGCTGGG
ZBTB18	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	75	87	+	9.54286	7.19e-05	0.731	CAGCCAGCTGCTG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	75	87	+	9.54286	7.19e-05	0.731	CAGCCAGCTGCTG
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	102	114	-	9.54286	7.19e-05	0.731	CAGCCAGCTGCTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	12	32	-	9.5102	7.2e-05	0.0205	GGAGGGGGCGGAGAGTGGGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	15	35	-	9.5102	7.2e-05	0.0205	GGAGGCCCGCCGGAAGAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	24	44	-	9.5102	7.2e-05	0.0205	GGGGCAGGCGAAGGCGGAACT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	24	44	-	9.5102	7.2e-05	0.0205	GGGGCAGGCGAAGGCGGAACT
ZNF263	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	50	70	-	9.5102	7.2e-05	0.0205	GGAGGGAGGAGGCGGTGAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	37	57	+	9.5102	7.2e-05	0.0205	GGAGGGGCTAAGGCGGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	45	65	+	9.5102	7.2e-05	0.0205	GGAGGGAGGAGGCGGTGAAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	61	81	+	9.5102	7.2e-05	0.0205	GGGGGTGGGGCGGGGTAGCGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	80	100	+	9.5102	7.2e-05	0.0205	GGAGGCCCGCCGGAAGAAGGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	-	9.85246	7.2e-05	0.0644	CCCCCGCGCGGCA
RREB1	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	48	67	-	3.51376	7.2e-05	0.0661	ACCACACACACAACCTGAAG
EGR2	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	13	23	+	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.6.0	21	31	+	9.41379	7.2e-05	0.0855	CCTGCCACGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	14	24	-	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	14	24	-	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	14	24	-	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	14	24	-	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	21	31	-	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	21	31	-	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	31	41	+	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	26	36	-	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	38	48	-	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	64	74	+	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	64	74	+	9.41379	7.2e-05	0.0855	CCGCCCCCGGA
EGR2	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	67	77	-	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	71	81	-	9.41379	7.2e-05	0.0855	TGGCCCACGCT
EGR2	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	81	91	+	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	91	101	+	9.41379	7.2e-05	0.0855	CCGCCCACGAG
EGR2	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	98	108	+	9.41379	7.2e-05	0.0855	CCTGCCACGCA
Hoxd3	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	91	106	-	11.1299	7.2e-05	1	CTCAACTAATTAGACC
ESR2	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	6	20	+	10.6154	7.2e-05	0.451	GGGGCACAGTGTCTG
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	39	53	+	10.6154	7.2e-05	0.451	AGGGCAGGAGGCCCA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	39	53	+	10.6154	7.2e-05	0.451	AGGGCAGGAGGCCCA
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	30	44	-	10.6154	7.2e-05	0.451	AGGGCAGGAGGCCCA
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	30	44	-	10.6154	7.2e-05	0.451	AGGGCAGGAGGCCCA
NFIX	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	12	20	+	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	27	35	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	27	35	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	27	35	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	27	35	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	27	35	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	29	37	+	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	35	43	+	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	22	30	-	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	22	30	-	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	23	31	-	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	62	70	-	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	62	70	-	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	95	103	-	10.4894	7.2e-05	0.758	GCTGCCAAG
NFIX	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	100	108	-	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	100	108	-	10.4894	7.2e-05	0.758	CCTGCCAAC
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	100	108	-	10.4894	7.2e-05	0.758	CCTGCCAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	33	42	-	11.54	7.2e-05	0.821	CTTGCGAAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	33	42	-	11.54	7.2e-05	0.821	CTTGCGAAAC
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	33	42	-	11.54	7.2e-05	0.821	CTTGCGAAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	33	42	-	11.54	7.2e-05	0.821	CTTGCGAAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	33	42	-	11.54	7.2e-05	0.821	CTTGCGAAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	+	11.54	7.2e-05	0.821	GTTGCGTAAT
T	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	30	45	-	7.73077	7.2e-05	1	TAACATCTGTGTGCGC
T	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	70	85	+	7.73077	7.2e-05	1	TAACATCTGTGTGCGC
TBX21	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	105	114	+	10.7273	7.2e-05	1	CATGTGTGAA
TBX21	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	1	10	-	10.7273	7.2e-05	1	CATGTGTGAA
RARA(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	45	61	+	3	7.2e-05	0.563	GGGGTAACAATAGGTCA
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	24	35	-	10.7571	7.2e-05	0.217	ACCGCCCACAGC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	17	-	11.7705	7.2e-05	0.389	TCCACCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	17	-	11.7705	7.2e-05	0.389	TCCACCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	74	83	+	11.7705	7.2e-05	0.389	TCCACCTGTC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	74	83	+	11.7705	7.2e-05	0.389	TCCACCTGTC
ZNF410	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	66	82	-	-3.32727	7.2e-05	1	TTTACCACATAATAGGC
ZNF410	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	66	82	-	-3.32727	7.2e-05	1	TTTACCACATAATAGGC
DBP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	+	11.2075	7.2e-05	1	CGTTGCGTAATT
SP4	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	13	29	+	3.58182	7.2e-05	0.0311	GAAGCGCCGCCTCTCCT
SP4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	21	37	+	3.58182	7.2e-05	0.0311	GTGCCCCCGCCCGCCCC
Alx1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	42	58	-	10.961	7.2e-05	1	ACATTTAATTAACAAAA
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	65	82	+	-2.25862	7.2e-05	0.937	GAAGTGTTGTGACTTGCT
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	65	82	+	-2.25862	7.2e-05	0.937	GAAGTGTTGTGACTTGCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	24	35	+	10.7105	7.2e-05	0.0343	CACACTCCCAGT
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	24	35	+	10.7105	7.2e-05	0.0343	CACACTCCCAGT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	24	35	+	10.7105	7.2e-05	0.0343	CACACTCCCAGT
SP8	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	26	37	-	10.7105	7.2e-05	0.0343	ACCCCGCCGCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	36	47	-	10.7105	7.2e-05	0.0343	ACCCCGCCGCCC
SP8	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	78	89	+	10.7105	7.2e-05	0.0343	ACCCCGCCGCCC
SP8	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	80	91	-	10.7105	7.2e-05	0.0343	CACACTCCCAGT
SREBF2	FLIPPED__Enhancer.flip.antisense__chr17:25416486..25416600,-__2863.1.0.0	29	38	+	11.0787	7.2e-05	0.871	ATGACCTGAT
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.0.0	77	86	-	11.0787	7.2e-05	0.871	ATGACCTGAT
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.1.0	77	86	-	11.0787	7.2e-05	0.871	ATGACCTGAT
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.1	77	86	-	11.0787	7.2e-05	0.871	ATGACCTGAT
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416486..25416600,+__1877.1.2.0	77	86	-	11.0787	7.2e-05	0.871	ATGACCTGAT
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	16	29	-	8.01639	7.2e-05	0.185	GACACCACGCGACC
GLIS2	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	18	31	-	8.01639	7.2e-05	0.185	GTCCCCCCGCCTCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	35	48	-	8.01639	7.2e-05	0.185	GCTCCCCCGCAGCC
GLIS2	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	53	66	-	8.01639	7.2e-05	0.185	CGCCCCCCTCGTTT
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	70	83	+	8.01639	7.2e-05	0.185	GACCCCCCCCACTC
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	70	83	+	8.01639	7.2e-05	0.185	GACCCCCCCCACTC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	72	85	+	8.01639	7.2e-05	0.185	CCCCCCCCACTCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	72	85	+	8.01639	7.2e-05	0.185	CCCCCCCCACTCCG
GLIS2	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	84	97	+	8.01639	7.2e-05	0.185	GTCCCCCCGCCTCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	47	57	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	47	57	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	61	71	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	61	71	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	69	79	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	69	79	+	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	2	12	-	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	27	37	-	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	36	46	-	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	42	52	-	10.9268	7.2e-05	0.0242	CCCCCTCCTCC
Crem	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	2	11	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	2	11	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	2	11	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	2	11	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	18	27	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	18	27	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	21	30	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	21	30	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	21	30	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	21	30	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	21	30	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	25	34	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	29	38	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	23	32	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	23	32	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	23	32	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	28	37	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	28	37	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	29	38	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	35	44	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	77	86	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	73	82	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	83	92	+	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	75	84	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	75	84	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	85	94	-	11.8689	7.2e-05	0.281	GCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	95	104	-	11.8689	7.2e-05	0.281	GCTGACGTCA
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	13	25	+	10.6721	7.2e-05	0.359	CTGTCTCCCAGGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	13	25	+	10.6721	7.2e-05	0.359	CTGTCTCCCAGGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	13	25	+	10.6721	7.2e-05	0.359	CTGTCTCCCAGGC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	13	25	+	10.6721	7.2e-05	0.359	CTGTCTCCCAGGC
ETV2	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	48	58	+	10.3279	7.21e-05	0.18	GGCCGGAAACA
ETV2	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	67	-	10.3279	7.21e-05	0.18	GGCCGGAAACA
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
ETV1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.3091	7.21e-05	0.118	TCCGGAAGCC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	-	7.96154	7.21e-05	0.209	GTCGCGTGAG
ESR1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	19	35	-	-0.515152	7.21e-05	0.514	AGGGGCTAGGTGACCCA
ESR1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	47	63	+	-0.515152	7.21e-05	0.514	AGGGGCTAGGTGACCCA
ESRRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	10	20	-	8.31034	7.21e-05	1	CCAAGGCCAAC
ESRRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	39	49	+	8.31034	7.21e-05	1	CCAAGGCCAAC
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	39	49	+	8.31034	7.21e-05	1	CCAAGGCCAAC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	50	64	+	9.43939	7.21e-05	0.328	CTAGTTTTTTTTTTT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	39	51	+	8.04545	7.21e-05	0.264	AGGGGAATTCCTG
NFKB2	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	64	76	-	8.04545	7.21e-05	0.264	AGGGGAATTCCTG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	48	57	-	11.0816	7.21e-05	0.15	ACCCCGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	48	57	-	11.0816	7.21e-05	0.15	ACCCCGTGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	48	57	-	11.0816	7.21e-05	0.15	ACCCCGTGAC
TFE3	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	62	71	+	11.0816	7.21e-05	0.15	AGCACGAGAC
POU3F2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	18	29	+	10.7258	7.21e-05	1	GTATGTAAATCT
POU3F2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	18	29	+	10.7258	7.21e-05	1	GTATGTAAATCT
ZIC1	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	87	100	-	6.14894	7.21e-05	0.102	GGCAGCCCGCGGCT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	18	27	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	18	27	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	18	27	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	18	27	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	30	39	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	54	63	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	54	63	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	54	63	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	54	63	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	52	61	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	76	85	+	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Klf4	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	88	97	-	10.6224	7.21e-05	0.0253	TGGGCGGAGT
Spz1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	11	21	-	11.1182	7.21e-05	0.77	AGGGGAGCAGG
Spz1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	94	104	+	11.1182	7.21e-05	0.77	AGGGGAGCAGG
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:122407077..122407191,+__2494.1.0.0	13	23	-	11.2182	7.21e-05	0.0551	CGCCCTCGGCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	33	+	11.2182	7.21e-05	0.0551	AGCCTCCGGGG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	37	47	-	11.2182	7.21e-05	0.0551	AGCCTCCGGGG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	40	50	-	11.2182	7.21e-05	0.0551	GGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	40	50	-	11.2182	7.21e-05	0.0551	GGCCTCGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	40	50	-	11.2182	7.21e-05	0.0551	GGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	40	50	-	11.2182	7.21e-05	0.0551	GGCCTCGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	40	50	-	11.2182	7.21e-05	0.0551	GGCCTCGGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr2:122407077..122407191,-__1173.1.0.0	92	102	+	11.2182	7.21e-05	0.0551	CGCCCTCGGCG
EGR1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	30	43	-	10.1346	7.21e-05	0.0264	CAGCCTCCGCCACA
EGR1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	72	85	+	10.1346	7.21e-05	0.0264	CAGCCTCCGCCACA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	74	87	+	10.1346	7.21e-05	0.0264	TCCCCACTTCCTCC
Dmbx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	32	48	+	11.25	7.21e-05	1	ATGACAGGCTTAGGCAG
JUND	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	98	108	+	10.3191	7.21e-05	0.235	TCTGAGTCAGG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	12	+	11.1273	7.21e-05	0.0924	AGCCTCAGGGGG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	+	11.1273	7.21e-05	0.0924	CGCCCGGAGGGG
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	8	19	-	4.5122	7.21e-05	0.631	CCTCCCACGAAA
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	8	19	-	4.5122	7.21e-05	0.631	CCTCCCACGAAA
E2F8	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	96	107	+	4.5122	7.21e-05	0.631	CCTCCCACGAAA
CREB3L1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	24	37	-	8.40909	7.21e-05	0.329	CCGCCACATCCTCC
CREB3L1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	78	91	+	8.40909	7.21e-05	0.329	CCGCCACATCCTCC
ELF4	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	41	52	+	8.93443	7.21e-05	0.115	CCACCGGAAGCA
ELF4	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	64	75	+	8.93443	7.21e-05	0.115	CCACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	74	-	8.93443	7.21e-05	0.115	CCACCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	74	-	8.93443	7.21e-05	0.115	CCACCGGAAGCA
SPIC	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	32	45	+	10.7606	7.21e-05	0.281	AAACTGGGGAAGTG
SPIC	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	15	28	-	10.7606	7.21e-05	0.281	AAAAAAGGAAAGTC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	16	30	+	7.94286	7.21e-05	0.118	TGCCTCCTCCCGTGA
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	31	45	-	7.94286	7.21e-05	0.118	GCCACCCTGCGTCGT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	31	45	-	7.94286	7.21e-05	0.118	GCCACCCTGCGTCGT
Mafb	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	55	66	+	11.191	7.22e-05	0.865	TTTCCGCTGACG
Mafb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	81	92	+	11.191	7.22e-05	0.865	TTTCCGCTGACG
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	75	85	+	11.4286	7.22e-05	0.79	CTTTCACAACC
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	75	85	+	11.4286	7.22e-05	0.79	CTTTCACAACC
EGR3	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	15	29	+	6.17241	7.22e-05	0.0417	TCCCGCCCCTGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	10	24	-	6.17241	7.22e-05	0.0417	CGCCCCCCGCGCGTT
EGR3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	53	67	+	6.17241	7.22e-05	0.0417	TCCCGCCCCTGCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	42	56	-	6.17241	7.22e-05	0.0417	CGCCCCCCGCGCGTT
EGR3	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	59	73	+	6.17241	7.22e-05	0.0417	CGCCCCCCGCGCGTT
EGR3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	48	62	-	6.17241	7.22e-05	0.0417	TCCCGCCCCTGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	91	105	+	6.17241	7.22e-05	0.0417	CGCCCCCCGCGCGTT
Ascl2	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	90	99	-	10.8714	7.22e-05	0.244	GACACCTGCT
Ascl2	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	16	25	+	10.8714	7.22e-05	0.244	GACACCTGCT
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	8	18	-	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	8	18	-	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	8	18	-	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	8	18	-	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	8	18	-	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	23	33	+	9.90909	7.22e-05	0.0213	GCGCCCGCGAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	16	26	-	9.90909	7.22e-05	0.0213	AAGCGGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	16	26	-	9.90909	7.22e-05	0.0213	AAGCGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	82	92	-	9.90909	7.22e-05	0.0213	GCGCCCGCGAG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	82	92	-	9.90909	7.22e-05	0.0213	GCGCCCGCGAG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	93	103	+	9.90909	7.22e-05	0.0213	CAGCCCGCGCG
HINFP	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	88	99	-	10.5758	7.22e-05	0.109	CGGGCTCCGCGG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	28	39	+	11.0918	7.22e-05	0.0866	CGCCCACGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	28	39	+	11.0918	7.22e-05	0.0866	CGCCCACGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	73	+	11.0918	7.22e-05	0.0866	GGCCCGCGGGGA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	73	+	11.0918	7.22e-05	0.0866	GGCCCGCGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	-	11.0918	7.22e-05	0.0866	CCCCTGCGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	-	11.0918	7.22e-05	0.0866	CCCCTGCGGGCG
ELF5	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	47	57	+	11.3091	7.22e-05	0.146	TGCCGGAAGCG
ELF5	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	68	-	11.3091	7.22e-05	0.146	TGCCGGAAGCG
ELF5	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	71	-	11.3091	7.22e-05	0.146	TGCCGGAAGCG
Zfx	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	30	43	-	10.6364	7.22e-05	0.0648	GCGGCTGCAGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	72	85	+	10.6364	7.22e-05	0.0648	GCGGCTGCAGCCTC
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	45	56	+	10.2241	7.22e-05	0.33	GCGGCCACAAAA
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	45	56	+	10.2241	7.22e-05	0.33	GCGGCCACAAAA
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	64	73	-	11.1585	7.22e-05	0.472	GTCAGCCGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	64	73	-	11.1585	7.22e-05	0.472	GTCAGCCGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	64	73	-	11.1585	7.22e-05	0.472	GTCAGCCGAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	64	73	-	11.1585	7.22e-05	0.472	GTCAGCCGAC
SREBF1	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	42	51	+	11.1585	7.22e-05	0.472	GTCAGCCGAC
ISL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	8	15	+	10.7699	7.22e-05	1	GCAATTAA
ISL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	8	15	+	10.7699	7.22e-05	1	GCAATTAA
ISL2	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	64	+	10.7699	7.22e-05	1	GCAATTAA
ISL2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	64	+	10.7699	7.22e-05	1	GCAATTAA
BARX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	41	48	+	10.4528	7.22e-05	1	ACAATTAG
BARX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	86	93	+	10.4528	7.22e-05	1	ACAATTAG
BARX1	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	107	114	+	10.4528	7.22e-05	1	ACAATTAG
ISL2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	58	-	10.7699	7.22e-05	1	GCAATTAA
ISL2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	58	-	10.7699	7.22e-05	1	GCAATTAA
BARX1	WILDTYPE__Lincrna.noflip.NA__chr21:17791803..17791917,+__497.1.0.0	78	85	-	10.4528	7.22e-05	1	ACAATTAG
OTX2	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	58	65	+	11.3404	7.22e-05	1	CTAATCCG
OTX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	98	105	-	11.3404	7.22e-05	1	CTAATCCG
OTX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	98	105	-	11.3404	7.22e-05	1	CTAATCCG
SOX9	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	78	86	+	10.9024	7.22e-05	1	TCATTGTTC
KLF13	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	35	52	+	4.41379	7.22e-05	0.318	CTGAAACGCCCCGCCGGG
KLF13	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	63	80	-	4.41379	7.22e-05	0.318	CTGAAACGCCCCGCCGGG
EGR2	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	7	17	+	9.39655	7.22e-05	0.0855	GCGCCCGCGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	39	49	-	9.39655	7.22e-05	0.0855	GCGCCCGCGCG
EGR2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	66	76	+	9.39655	7.22e-05	0.0855	GCGCCCGCGCG
EGR2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	95	105	+	9.39655	7.22e-05	0.0855	GCGCCCGCGCG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	28	38	-	11.4364	7.22e-05	0.721	CAGCTCTCAAC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	28	38	-	11.4364	7.22e-05	0.721	CAGCTCTCAAC
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	63	73	-	11.4364	7.22e-05	0.721	ACCCACTCCAG
Nkx2-5(var.2)	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	102	112	-	11.4364	7.22e-05	0.721	AACCACTCATA
Nkx2-5(var.2)	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	3	13	+	11.4364	7.22e-05	0.721	AACCACTCATA
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	6	20	+	10.6346	7.22e-05	0.341	AATGTGCAAAGTGTA
HNF4G	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	6	20	+	10.6346	7.22e-05	0.341	AATGTGCAAAGTGTA
HNF4G	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	37	51	+	10.6346	7.22e-05	0.341	GGAAGACAAAGTGCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	11	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	11	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	21	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	18	28	+	10.3793	7.22e-05	0.0233	CACCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	18	28	+	10.3793	7.22e-05	0.0233	CACCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	11	21	-	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	11	21	-	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	28	38	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	28	38	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	32	42	-	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	32	42	-	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	63	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	73	83	+	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	77	87	-	10.3793	7.22e-05	0.0233	GCTCCGCCCCT
KLF16	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	87	97	-	10.3793	7.22e-05	0.0233	CACCCGCCCTC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	102	112	+	10.3793	7.22e-05	0.0233	CACCCGCCCTC
BATF::JUN	WILDTYPE__mrna.noflip.NA__chr9:113761711..113761825,-__1120.1.0.0	41	51	+	11.3077	7.22e-05	0.401	GAACTGACTAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	41	58	+	-14.8816	7.22e-05	0.0538	GGCAGGCGGGGAGGCCGG
Hoxd9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	16	25	+	10.9167	7.22e-05	1	ATAATTAAAA
Hoxd9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	16	25	+	10.9167	7.22e-05	1	ATAATTAAAA
Hoxd9	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	16	25	+	10.9167	7.22e-05	1	ATAATTAAAA
Hoxd9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	16	25	+	10.9167	7.22e-05	1	ATAATTAAAA
Hoxd9	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	38	47	+	10.9167	7.22e-05	1	ATAATTAAAA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	24	37	+	8.62069	7.22e-05	0.0365	CGCCCCTCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	24	37	+	8.62069	7.22e-05	0.0365	CGCCCCTCCCCTTT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	14	27	-	8.62069	7.22e-05	0.0365	AGCCGCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	14	27	-	8.62069	7.22e-05	0.0365	AGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	29	42	+	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	29	42	+	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	29	42	+	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	29	42	+	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	23	36	-	8.62069	7.22e-05	0.0365	TACCCCTCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	26	39	-	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	26	39	-	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	55	68	-	8.62069	7.22e-05	0.0365	AGCCCCGCCCCGCG
KLF14	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	79	92	+	8.62069	7.22e-05	0.0365	TACCCCTCCCCCCA
KLF14	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	88	101	+	8.62069	7.22e-05	0.0365	AGCCGCGCCCCGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	+	11.0577	7.22e-05	0.0758	TGCCCGAGGGG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	+	11.0577	7.22e-05	0.0758	TGCCCGAGGGG
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	6	23	-	9	7.22e-05	0.203	CATGTTTTGATTGGATGA
NFYA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	6	23	-	9	7.22e-05	0.203	CATGTTTTGATTGGATGA
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	92	109	+	9	7.22e-05	0.203	CATGTTTTGATTGGATGA
IRF7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	46	59	-	8.5	7.22e-05	0.731	GTTAAAGTGAAAGC
IRF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	46	59	-	8.5	7.22e-05	0.731	GTTAAAGTGAAAGC
HES7	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	76	87	+	3.12069	7.22e-05	0.2	CGCCACGAGCCC
Hic1	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	82	90	+	11.1731	7.23e-05	0.516	GTGCCAAGC
ELF1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	16	27	+	8.83636	7.23e-05	0.126	CCAGCGGAAGTG
YY1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	3	14	-	10.4615	7.23e-05	0.309	GAGGATGGCGCC
YY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	90	101	+	10.4615	7.23e-05	0.309	GAGCATGGCTGC
YY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	90	101	+	10.4615	7.23e-05	0.309	GAGCATGGCTGC
YY1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	90	101	+	10.4615	7.23e-05	0.309	GAGCATGGCTGC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	101	112	+	10.4615	7.23e-05	0.309	GAGGATGGCGCC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	101	112	+	10.4615	7.23e-05	0.309	GAGGATGGCGCC
YY1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	101	112	+	10.4615	7.23e-05	0.309	GAGGATGGCGCC
YY1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	101	112	+	10.4615	7.23e-05	0.309	GAGGATGGCGCC
YY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	101	112	+	10.4615	7.23e-05	0.309	GAGGATGGCGCC
Nfe2l2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	1	15	+	9.62121	7.23e-05	0.345	CCCAGTGACTCAGGC
Nfe2l2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	100	114	-	9.62121	7.23e-05	0.345	CCCAGTGACTCAGGC
ZNF143	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	4	19	+	1.17241	7.23e-05	0.4	CACCCAGCAGGCCACA
ZNF143	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	96	111	-	1.17241	7.23e-05	0.4	CACCCAGCAGGCCACA
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	96	111	-	1.17241	7.23e-05	0.4	CACCCAGCAGGCCACA
ZBTB33	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	95	109	-	10.1515	7.23e-05	0.118	CCCTCGCGCCGCTGC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.0.0	84	93	-	11.0101	7.23e-05	0.334	GGGACGTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.1.0	84	93	-	11.0101	7.23e-05	0.334	GGGACGTTCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	24	+	9.7069	7.23e-05	0.0554	GGCCGCGGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	31	+	9.7069	7.23e-05	0.0554	GGCCTGGAGGGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	31	+	9.7069	7.23e-05	0.0554	GGCCTGGAGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	31	+	9.7069	7.23e-05	0.0554	GGCCTGGAGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	31	+	9.7069	7.23e-05	0.0554	GGCCTGGAGGGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	37	49	-	9.7069	7.23e-05	0.0554	CGCCCGGCCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	37	49	-	9.7069	7.23e-05	0.0554	CGCCCGGCCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	-	9.7069	7.23e-05	0.0554	AGCCGCACGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	-	9.7069	7.23e-05	0.0554	AGCCGCACGGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	+	9.7069	7.23e-05	0.0554	CGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	+	9.7069	7.23e-05	0.0554	CGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	+	9.7069	7.23e-05	0.0554	CGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	+	9.7069	7.23e-05	0.0554	CGCCGCGCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	+	9.7069	7.23e-05	0.0554	CGCCGCGCAGGCA
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	60	73	+	3.54545	7.23e-05	0.379	CGCCCCCTGCCACG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	19	33	+	9.21429	7.23e-05	0.122	GCGGGGCGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	25	39	+	9.21429	7.23e-05	0.122	GCGGGGCGGGGGGGG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	76	90	-	9.21429	7.23e-05	0.122	GCGGGGCGGGGGGGG
CREB3	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	31	44	+	9.57143	7.23e-05	0.273	CGGTCACGTGACCC
CREB3	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	57	70	+	9.57143	7.23e-05	0.273	CGGTCACGTGACCC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	+	9.43636	7.23e-05	0.254	CTCACGTGTT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	-	9.43636	7.23e-05	0.254	CTCACGTGTT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	-	9.43636	7.23e-05	0.254	CTCACGTGTT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	-	9.43636	7.23e-05	0.254	CTCACGTGTT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	-	9.43636	7.23e-05	0.254	CTCACGTGTT
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	23	-	10.1064	7.23e-05	0.0995	CCCGGAAGCT
ELK1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	23	-	10.1064	7.23e-05	0.0995	CCCGGAAGCT
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	88	97	+	10.1064	7.23e-05	0.0995	CCCGGAAGCT
ELK1	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	92	101	+	10.1064	7.23e-05	0.0995	CCCGGAAGCT
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	79	89	-	11.2692	7.23e-05	1	GGCAATAAACA
SMAD3	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	31	40	-	9.4	7.24e-05	1	CGTCCAGACC
SMAD3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	75	84	+	9.4	7.24e-05	1	CGTCCAGACC
SMAD3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	75	84	+	9.4	7.24e-05	1	CGTCCAGACC
SMAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	75	84	+	9.4	7.24e-05	1	CGTCCAGACC
SMAD3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	75	84	+	9.4	7.24e-05	1	CGTCCAGACC
SP4	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	13	29	+	3.56364	7.24e-05	0.0312	CTGCTCCCGCCCCCTCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	19	35	-	3.56364	7.24e-05	0.0312	TCAGCCACACCCAACAT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	19	35	-	3.56364	7.24e-05	0.0312	TCAGCCACACCCAACAT
E2F8	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	63	74	-	4.4878	7.24e-05	0.631	CTTCCCCCAGAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	20	37	-	-14.8947	7.24e-05	0.0538	GGAAGCGGGCGGGGAGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	20	37	-	-14.8947	7.24e-05	0.0538	GGAAGCGGGCGGGGAGGG
Hoxc9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	44	56	-	10.9365	7.24e-05	1	TCTAATAAATCAA
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.1.0	25	39	+	10.3077	7.24e-05	0.848	CCCGCTTTCTCCGCC
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	25	39	+	10.3077	7.24e-05	0.848	CCCGCTTTCTCCGCC
CENPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	82	96	-	10.3077	7.24e-05	0.848	CCCTCGCAAAGCGAA
CENPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	82	96	-	10.3077	7.24e-05	0.848	CCCTCGCAAAGCGAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	24	38	-	10.2586	7.24e-05	0.0157	AACCCTCCTCCCGCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	24	38	-	10.2586	7.24e-05	0.0157	AACCCTCCTCCCGCC
SP2	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	38	52	-	10.2586	7.24e-05	0.0157	CTTCCTCCCCTTGTC
MAFG	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	91	111	-	9.66327	7.24e-05	1	CTCACACTGACTCAGCAGCAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	17	31	+	10.7387	7.24e-05	0.188	TCAGGGCTGAGGTCA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	77	91	+	10.7387	7.24e-05	0.188	GGGAAGCAGAGGGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	54	68	-	10.7387	7.24e-05	0.188	GTTGGGGAGAGGGGT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	54	68	-	10.7387	7.24e-05	0.188	GTTGGGGAGAGGGGT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	24	38	-	8.47541	7.24e-05	0.477	ATGACTCATCCTCAT
DMRT3	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	2	12	+	11.4426	7.24e-05	1	CATGTATCTAG
DMRT3	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	7	17	+	11.4426	7.24e-05	1	CATGTATCTAG
DMRT3	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	98	108	-	11.4426	7.24e-05	1	CATGTATCTAG
DMRT3	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	103	113	-	11.4426	7.24e-05	1	CATGTATCTAG
SOX4	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	71	86	-	-12.9394	7.24e-05	1	CAAGAGTGGCATTGCT
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	+	10.4545	7.24e-05	0.228	TCTGAGTCACC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	+	10.4545	7.24e-05	0.228	TCTGAGTCACC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	3	15	-	8.0303	7.24e-05	0.264	GGGGGAATCCCGC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.0.0	3	15	-	8.0303	7.24e-05	0.264	GGGGGAATCCCGC
PLAG1	WILDTYPE__mrna.noflip.NA__chr10:26727261..26727375,+__975.1.0.0	24	37	-	5.40816	7.24e-05	0.0741	GGGGCCTAGTGATG
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	65	74	+	11.5091	7.24e-05	0.729	GTTGCGTAAT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	32	42	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	34	44	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	50	60	+	10.6818	7.24e-05	0.0509	CTCCCCACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:68310764..68310878,+__1879.1.0.0	41	51	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	62	72	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	62	72	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	62	72	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	62	72	-	10.6818	7.24e-05	0.0509	GGCTCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	93	103	+	10.6818	7.24e-05	0.0509	GGCTCCACCCC
STAT1	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	49	59	-	10.4364	7.24e-05	0.372	TCTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	85	95	-	10.4364	7.24e-05	0.372	ATTACGGGAAT
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	85	95	-	10.4364	7.24e-05	0.372	ATTACGGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	56	66	+	10.4364	7.24e-05	0.372	TCTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	56	66	+	10.4364	7.24e-05	0.372	TCTCCAGGAAG
Rfx1	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	74	87	-	9.96552	7.24e-05	0.292	TTCATCATAGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	9	22	+	9.96552	7.24e-05	0.292	GGTGTCATGGCGGC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	9	22	+	9.96552	7.24e-05	0.292	GGTGTCATGGCGGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	29	42	+	9.96552	7.24e-05	0.292	GGTGTCATGGCGGC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	29	42	+	9.96552	7.24e-05	0.292	GGTGTCATGGCGGC
SP1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	8	18	+	10.7692	7.24e-05	0.0179	ATCCCTCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	62	72	+	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	62	72	+	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	62	72	+	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	53	63	-	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	53	63	-	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	53	63	-	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	53	63	-	10.7692	7.24e-05	0.0179	TGCCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	77	87	-	10.7692	7.24e-05	0.0179	GGTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	77	87	-	10.7692	7.24e-05	0.0179	GGTCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	77	87	-	10.7692	7.24e-05	0.0179	GGTCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	77	87	-	10.7692	7.24e-05	0.0179	GGTCCTCCTCC
SP1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	97	107	-	10.7692	7.24e-05	0.0179	ATCCCTCCCCG
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	80	93	+	6.12195	7.24e-05	0.5	ATTGCAGACGCCAT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	80	93	+	6.12195	7.24e-05	0.5	ATTGCAGACGCCAT
GCM2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	63	72	+	11.1148	7.25e-05	0.726	GATGCGGGAG
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	23	43	+	8.79032	7.25e-05	0.187	TTTTTTTTTTTTTTTTCCTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	23	43	+	8.79032	7.25e-05	0.187	TTTTTTTTTTTTTTTTCCTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	23	43	+	8.79032	7.25e-05	0.187	TTTTTTTTTTTTTTTTCCTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	23	43	+	8.79032	7.25e-05	0.187	TTTTTTTTTTTTTTTTCCTTT
MSC	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	46	55	-	10.2073	7.25e-05	0.569	TAGAGCTGTT
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	55	68	-	8	7.25e-05	0.185	CGCCCCCCGGCATG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	55	68	-	8	7.25e-05	0.185	CGCCCCCCGGCATG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	77	89	+	11.6122	7.25e-05	0.183	CTCAGCTGCCTTG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	77	89	+	11.6122	7.25e-05	0.183	CTCAGCTGCCTTG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	-	11.1636	7.25e-05	0.0577	GGCCCTGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	-	11.1636	7.25e-05	0.0577	GGCCCTGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	+	11.1636	7.25e-05	0.0577	GGCCCTGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	+	11.1636	7.25e-05	0.0577	GGCCCTGGGGCC
KLF16	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	8	18	+	10.3621	7.25e-05	0.0234	ACCCCACCTCC
KLF16	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	15	25	-	10.3621	7.25e-05	0.0234	ACCCCACCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	37	47	-	10.3621	7.25e-05	0.0234	ACCCCACCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	37	47	-	10.3621	7.25e-05	0.0234	ACCCCACCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	90	100	+	10.3621	7.25e-05	0.0234	ACCCCACCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	97	107	-	10.3621	7.25e-05	0.0234	ACCCCACCTCC
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	29	39	-	11.0385	7.25e-05	0.0758	ACCCGGAGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	70	80	+	11.0385	7.25e-05	0.0758	AGCCCACGGCA
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	76	86	+	11.0385	7.25e-05	0.0758	ACCCGGAGGCG
ZBTB7B	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	67	78	-	10.431	7.25e-05	0.365	ACGCCCACCCCC
ZBTB7B	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	37	48	+	10.431	7.25e-05	0.365	ACGCCCACCCCC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	80	-	10.898	7.25e-05	0.219	GGCACGTGGCA
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	80	-	10.898	7.25e-05	0.219	GGCACGTGGCA
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	80	-	10.898	7.25e-05	0.219	GGCACGTGGCA
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	80	-	10.898	7.25e-05	0.219	GGCACGTGGCA
USF1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	45	+	10.898	7.25e-05	0.219	GGCACGTGGCA
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	3	17	-	10.2182	7.25e-05	0.109	CCCACCCCGCCGAGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	3	17	-	10.2182	7.25e-05	0.109	CCCACCCCGCCGAGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	3	17	-	10.2182	7.25e-05	0.109	CCCACCCCGCCGAGG
ZIC4	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	23	37	+	10.2182	7.25e-05	0.109	CCCCTCCTGCCGCGG
ELF3	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	19	31	-	8.08621	7.25e-05	0.174	AACGAGGAAATGC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	12	23	+	11.0806	7.25e-05	0.281	GCCCCCACCGGC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	12	23	+	11.0806	7.25e-05	0.281	GCCCCCACCGGC
MAFF	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	9	26	+	10.7556	7.25e-05	0.965	CATTGGTCAGCAGTGTGT
TEAD4	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	17	26	+	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	29	38	+	11.2419	7.25e-05	0.799	CAAATTCCTT
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	29	38	+	11.2419	7.25e-05	0.799	CAAATTCCTT
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	88	97	+	11.2419	7.25e-05	0.799	TACATTCCTA
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	88	97	+	11.2419	7.25e-05	0.799	TACATTCCTA
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	24	33	-	11.2419	7.25e-05	0.799	CAAATTCCTT
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	58	67	-	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	87	96	-	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	87	96	-	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	87	96	-	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	87	96	-	11.2419	7.25e-05	0.799	TGCATTCCAG
TEAD4	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	89	98	-	11.2419	7.25e-05	0.799	TGCATTCCAG
ZIC3	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	18	32	-	7.92857	7.25e-05	0.118	CGCCCCCAGCGGCGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	60	74	+	7.92857	7.25e-05	0.118	CCCCACCCCCGGCTC
ZIC3	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	83	97	+	7.92857	7.25e-05	0.118	CGCCCCCAGCGGCGC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	6	15	-	11.0577	7.25e-05	0.289	CACACGTGAG
BHLHE40	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	38	47	-	11.0577	7.25e-05	0.289	CACACGTGAG
BHLHE40	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	68	77	+	11.0577	7.25e-05	0.289	CACACGTGAG
HOXC11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	25	35	+	11.3793	7.25e-05	1	GGTTGTAAAAA
HOXC11	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	25	35	+	11.3793	7.25e-05	1	GGTTGTAAAAA
HOXC11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	25	35	+	11.3793	7.25e-05	1	GGTTGTAAAAA
HOXC11	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	25	35	+	11.3793	7.25e-05	1	GGTTGTAAAAA
HOXC11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	25	35	+	11.3793	7.25e-05	1	GGTTGTAAAAA
KLF13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	5	22	-	4.39655	7.26e-05	0.318	CAGCCACTCCCATGCATG
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	5	22	-	4.39655	7.26e-05	0.318	CAGCCACTCCCATGCATG
KLF13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	5	22	-	4.39655	7.26e-05	0.318	CAGCCACTCCCATGCATG
KLF13	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	5	22	-	4.39655	7.26e-05	0.318	CAGCCACTCCCATGCATG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	66	83	-	4.39655	7.26e-05	0.318	CAAGCACGCCCCTGAGCC
Stat5a::Stat5b	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	39	49	+	11.3061	7.26e-05	0.387	GATCCCCAGAA
Hes2	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	42	54	-	10.6508	7.26e-05	0.563	ATGGGAAACGTGA
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	33	47	+	8.09836	7.26e-05	0.07	GGGCCCGCCCTGCCT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	50	64	+	8.09836	7.26e-05	0.07	GGACCCGCCCTGGTC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	50	64	+	8.09836	7.26e-05	0.07	GGACCCGCCCTGGTC
Klf12	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	39	53	-	8.09836	7.26e-05	0.07	GGGCCCGCCCTGCCT
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	62	76	+	8.09836	7.26e-05	0.07	GGGCCCGCCCTGCCT
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	70	84	+	8.09836	7.26e-05	0.07	GGGCCCGCCCCTTCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	70	84	+	8.09836	7.26e-05	0.07	GGGCCCGCCCCTTCT
Klf12	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	68	82	-	8.09836	7.26e-05	0.07	GGGCCCGCCCTGCCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	5	15	-	9.36207	7.26e-05	0.0857	ACGCCCCCTCT
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	19	29	+	9.36207	7.26e-05	0.0857	CCTCCCCCGCT
ZIC1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	46	59	+	6.12766	7.26e-05	0.102	CGCAACCCGGTGCG
ZIC1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	56	69	-	6.12766	7.26e-05	0.102	CGCAACCCGGTGCG
ZIC1	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	79	92	-	6.12766	7.26e-05	0.102	TGGCTCCCGCGGTG
FOXP2	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	8	18	+	11.5152	7.26e-05	1	AAGAAAACAAG
FOXP2	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	26	36	-	11.5152	7.26e-05	1	AAGAAAACAAG
FOXP2	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	79	89	+	11.5152	7.26e-05	1	AAGAAAACAAG
FOXP2	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	97	107	-	11.5152	7.26e-05	1	AAGAAAACAAG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	57	69	+	10.1639	7.26e-05	0.0589	GGCCCGGGAGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	57	69	+	10.1639	7.26e-05	0.0589	GGCCCGGGAGGGG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	50	64	-	10.2364	7.26e-05	0.33	AGGAAGAGAAAGATT
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	50	64	-	10.2364	7.26e-05	0.33	AGGAAGAGAAAGATT
Zfx	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	82	95	+	10.6212	7.26e-05	0.065	TCGCGTCGGGCCTC
SP3	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	34	44	+	10.9106	7.26e-05	0.0244	GCGCCGCCCAC
SP3	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	71	81	-	10.9106	7.26e-05	0.0244	GCGCCGCCCAC
THAP1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	21	29	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	38	46	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.1.0	38	46	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	38	46	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.0.0	38	46	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	38	46	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	53	61	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	68	76	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	76	84	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	77	85	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	77	85	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	84	92	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	102	110	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	102	110	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	102	110	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	102	110	+	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	10	18	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	10	18	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	23	31	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	26	34	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	27	35	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	27	35	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	28	36	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	28	36	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	32	40	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	37	45	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	39	47	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	44	52	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	44	52	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	54	62	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	86	94	-	10.0132	7.26e-05	0.215	CCGCCCACA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	86	94	-	10.0132	7.26e-05	0.215	CCGCCCACA
SP8	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	4	15	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	16	27	+	10.6974	7.26e-05	0.0343	CTCCCGCCCCCT
SP8	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	7	18	-	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	28	39	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	28	39	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	28	39	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	20	31	-	10.6974	7.26e-05	0.0343	CTCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	20	31	-	10.6974	7.26e-05	0.0343	CTCCCGCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	41	52	+	10.6974	7.26e-05	0.0343	CTCCCGCCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	41	52	+	10.6974	7.26e-05	0.0343	CTCCCGCCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	36	47	-	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	68	79	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	76	87	-	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	97	108	+	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	100	111	-	10.6974	7.26e-05	0.0343	TCCCCGCCCCGC
RXRG	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	86	99	+	1.48936	7.26e-05	0.48	GAGGTGAGAGTTCC
RXRG	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	86	99	+	1.48936	7.26e-05	0.48	GAGGTGAGAGTTCC
RXRG	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	86	99	+	1.48936	7.26e-05	0.48	GAGGTGAGAGTTCC
RXRG	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	17	30	-	1.48936	7.26e-05	0.48	GAGGTGAGAGTTCC
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	19	30	+	2.81967	7.26e-05	0.598	AGCCAGGTGTCT
PKNOX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	19	30	+	2.81967	7.26e-05	0.598	AGCCAGGTGTCT
PKNOX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	19	30	+	2.81967	7.26e-05	0.598	AGCCAGGTGTCT
PKNOX2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	39	50	-	2.81967	7.26e-05	0.598	AGACAGGTGGGA
PKNOX2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	65	76	+	2.81967	7.26e-05	0.598	AGACAGGTGGGA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	91	101	-	10.2653	7.26e-05	0.343	GGACACGCGGT
MAX::MYC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	91	101	-	10.2653	7.26e-05	0.343	GGACACGCGGT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	27	44	+	-14.9211	7.26e-05	0.0538	GGAAGGGGCGGGGCAGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	29	46	+	-14.9211	7.26e-05	0.0538	GGAGGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	69	86	-	-14.9211	7.26e-05	0.0538	GGAGGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	69	86	-	-14.9211	7.26e-05	0.0538	GGAGGAGGAGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	69	86	-	-14.9211	7.26e-05	0.0538	GGAGGAGGAGGAGGAGGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	1	16	+	10.1273	7.26e-05	0.0398	ACACGCCCCTGCGCGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	1	16	+	10.1273	7.26e-05	0.0398	ACACGCCCCTGCGCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	1	16	+	10.1273	7.26e-05	0.0398	ACACGCCCCTGCGCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	1	16	+	10.1273	7.26e-05	0.0398	ACACGCCCCTGCGCGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	1	16	+	10.1273	7.26e-05	0.0398	ACACGCCCCTGCGCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	15	30	+	10.1273	7.26e-05	0.0398	CCACGCCCCCACCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	15	30	+	10.1273	7.26e-05	0.0398	CCACGCCCCCACCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	11	26	-	10.1273	7.26e-05	0.0398	CCCCGCCCCGGCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	11	26	-	10.1273	7.26e-05	0.0398	CCCCGCCCCGGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	11	26	-	10.1273	7.26e-05	0.0398	CCCCGCCCCGGCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	31	46	+	10.1273	7.26e-05	0.0398	CTCCCCCCACTCAAGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	31	46	+	10.1273	7.26e-05	0.0398	CTCCCCCCACTCAAGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	31	46	+	10.1273	7.26e-05	0.0398	CTCCCCCCACTCAAGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	31	46	+	10.1273	7.26e-05	0.0398	CTCCCCCCACTCAAGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	36	51	+	10.1273	7.26e-05	0.0398	CCCCCCCCGCGCGCAG
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	37	52	+	10.1273	7.26e-05	0.0398	CCCCGCCCCGGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	37	52	+	10.1273	7.26e-05	0.0398	CGCCGCCCGCCCGCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	37	52	+	10.1273	7.26e-05	0.0398	CGCCGCCCGCCCGCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	60	75	+	10.1273	7.26e-05	0.0398	GGCGGCCCCCGCACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	60	75	+	10.1273	7.26e-05	0.0398	GGCGGCCCCCGCACCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	60	75	+	10.1273	7.26e-05	0.0398	GGCGGCCCCCGCACCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	68	83	+	10.1273	7.26e-05	0.0398	TCAGCCCCACCCACTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	68	83	+	10.1273	7.26e-05	0.0398	TCAGCCCCACCCACTG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	68	83	+	10.1273	7.26e-05	0.0398	TCAGCCCCACCCACTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	68	83	+	10.1273	7.26e-05	0.0398	TCAGCCCCACCCACTG
EGR4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	63	78	-	10.1273	7.26e-05	0.0398	CCCCGCCCCGGCCTCC
EGR4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	63	78	-	10.1273	7.26e-05	0.0398	CGCCGCCCGCCCGCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	84	99	+	10.1273	7.26e-05	0.0398	TTCCGCCCGCTCCATG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	84	99	+	10.1273	7.26e-05	0.0398	TTCCGCCCGCTCCATG
BATF3	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	53	66	-	0.621212	7.26e-05	0.229	AGTTGACATCATTG
E2F7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	44	57	+	-4.96721	7.27e-05	1	GTTTCCCACCCATT
E2F7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	44	57	+	-4.96721	7.27e-05	1	GTTTCCCACCCATT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	85	94	-	11.2697	7.27e-05	0.93	GATCTGGCTG
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	2	20	+	10.4032	7.27e-05	0.15	TTGCCCAGCCAGCTGAAAC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	2	20	+	10.4032	7.27e-05	0.15	TTGCCCAGCCAGCTGAAAC
PAX5	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	9	27	+	10.4032	7.27e-05	0.15	GGGACAGGCGAGGCGAGGC
PAX5	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	88	106	-	10.4032	7.27e-05	0.15	GGGACAGGCGAGGCGAGGC
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	39	52	-	8.48387	7.27e-05	0.731	AGGAAAGTCAAAGT
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	39	52	-	8.48387	7.27e-05	0.731	AGGAAAGTCAAAGT
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	57	70	+	8.48387	7.27e-05	0.731	AGGAAAGTCAAAGT
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	57	70	+	8.48387	7.27e-05	0.731	AGGAAAGTCAAAGT
BHLHE41	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	47	56	+	7.90385	7.27e-05	0.209	AGCGCGTGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	5	14	-	7.90385	7.27e-05	0.209	AGCGCGTGAC
BHLHE41	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	59	68	-	7.90385	7.27e-05	0.209	AGCGCGTGAC
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	29	40	-	3.10345	7.27e-05	0.2	TGCCACATGCCC
HES7	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	93	104	-	3.10345	7.27e-05	0.2	TGGCACGTTCCT
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	25	36	+	3.10345	7.27e-05	0.2	TGCCACATGCCC
GCM1	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	36	46	+	10.7143	7.27e-05	0.531	CATGCTGGTTG
GCM1	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	101	111	-	10.7143	7.27e-05	0.531	CATGCTGGTTG
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	66	75	+	10.7347	7.27e-05	0.266	CATCACGAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	24	44	-	9.4898	7.27e-05	0.0205	CAGGAAGGAAGAAGGGAGGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	26	46	-	9.4898	7.27e-05	0.0205	GAGGAGGGAGGAGGGAGGAAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	67	87	-	9.4898	7.27e-05	0.0205	GAGGGAGTAGGAAGGAAGCAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	76	96	-	9.4898	7.27e-05	0.0205	AGAAGAAGAGGAAAAAAAAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	77	97	-	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	77	97	-	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	77	97	-	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	77	97	-	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	87	107	-	9.4898	7.27e-05	0.0205	GAGAGAGGGTTGTAGAGAGGG
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	87	107	-	9.4898	7.27e-05	0.0205	GAGAGAGGGTTGTAGAGAGGG
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	87	107	-	9.4898	7.27e-05	0.0205	GAGAGAGGGTTGTAGAGAGGG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	87	107	-	9.4898	7.27e-05	0.0205	GAGAGAGGGTTGTAGAGAGGG
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	8	28	+	9.4898	7.27e-05	0.0205	GAGAGAGGGTTGTAGAGAGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	19	39	+	9.4898	7.27e-05	0.0205	AGAAGAAGAGGAAAAAAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	28	48	+	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	28	48	+	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	28	48	+	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	28	48	+	9.4898	7.27e-05	0.0205	GAGGGGGTGGAGGGAGGGAAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	53	73	+	9.4898	7.27e-05	0.0205	GGTGGTGAAAAAGAGGAGAAA
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	+	5.75714	7.27e-05	0.393	GGTCACCGTGACAATG
Klf4	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	48	57	-	10.5816	7.27e-05	0.0255	TGGGTGAGGC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	+	11.0816	7.27e-05	0.0866	CGCCCTAGGGGC
RELA	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	9	18	+	9.63265	7.27e-05	0.24	GTGGAATTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	60	69	+	9.63265	7.27e-05	0.24	GTGGAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	60	69	+	9.63265	7.27e-05	0.24	GTGGAATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	99	108	+	9.63265	7.27e-05	0.24	GTGGAATTCC
RELA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	99	108	+	9.63265	7.27e-05	0.24	GTGGAATTCC
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	80	93	-	11.1552	7.27e-05	0.34	CTGCCGGGAATCCT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	80	93	-	11.1552	7.27e-05	0.34	CTGCCGGGAATCCT
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	80	93	-	11.1552	7.27e-05	0.34	CTGCCGGGAATCCT
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	80	93	-	11.1552	7.27e-05	0.34	CTGCCGGGAATCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	11	24	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	11	24	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	11	24	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	52	65	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	52	65	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	52	65	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	52	65	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	52	65	-	8.60345	7.27e-05	0.0366	TGCTGCGCCCTCCT
SP4	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	28	44	+	3.54545	7.27e-05	0.0312	GCAGCCACACCTCCACA
SP4	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	45	61	+	3.54545	7.27e-05	0.0312	TAAGACACGCCGCATAC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	54	70	-	3.54545	7.27e-05	0.0312	TAAGACACGCCGCATAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	54	70	-	3.54545	7.27e-05	0.0312	TAAGACACGCCGCATAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	55	71	-	3.54545	7.27e-05	0.0312	CCAGCGCCGCCTCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	55	71	-	3.54545	7.27e-05	0.0312	CCAGCGCCGCCTCCCTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	55	71	-	3.54545	7.27e-05	0.0312	CCAGCGCCGCCTCCCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	55	71	-	3.54545	7.27e-05	0.0312	CCAGCGCCGCCTCCCTC
SP4	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	71	87	-	3.54545	7.27e-05	0.0312	GCAGCCACACCTCCACA
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	15	26	+	9.67347	7.27e-05	0.189	ATGAAGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	15	26	+	9.67347	7.27e-05	0.189	ATGAAGGGGGCG
HOXD13	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	48	57	+	11.254	7.27e-05	1	CCAATAAATA
FEV	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	11.3462	7.27e-05	0.142	AGCGGAAATG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.3462	7.27e-05	0.142	TCCGGAAGCT
FEV	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	11.3462	7.27e-05	0.142	AGCGGAAATG
FEV	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.3462	7.27e-05	0.142	TCCGGAAGCT
RUNX1	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	40	50	+	11.2069	7.27e-05	0.285	CTGTGTGGTTA
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	48	58	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	48	58	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	48	58	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	48	58	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	45	55	-	11.2069	7.27e-05	0.285	CTGTGTGGTTA
RUNX1	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	60	70	+	11.2069	7.27e-05	0.285	CTGTGTGGTTA
RUNX1	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	65	75	-	11.2069	7.27e-05	0.285	CTGTGTGGTTA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	76	86	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	76	86	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	76	86	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	76	86	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	76	86	+	11.2069	7.27e-05	0.285	CTCTGTGGCTC
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	19	30	+	11.4746	7.27e-05	1	GGTGACGTAATC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	19	30	+	11.4746	7.27e-05	1	GGTGACGTAATC
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	11	22	+	11.1798	7.27e-05	0.865	GTAGTGCTGAGT
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	11	22	+	11.1798	7.27e-05	0.865	GTAGTGCTGAGT
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	25	36	+	8.81818	7.27e-05	0.126	ACACAGGAAGTC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	83	94	+	8.81818	7.27e-05	0.126	ACACAGGAAGTC
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.2909	7.27e-05	0.134	AGCGGAAGCG
ERG	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.2909	7.27e-05	0.134	AGCGGAAGCG
MTF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	38	51	-	6.10976	7.28e-05	0.5	GGCGCGCCCGGCAC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	38	51	-	6.10976	7.28e-05	0.5	GGCGCGCCCGGCAC
MTF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	38	51	-	6.10976	7.28e-05	0.5	GGCGCGCCCGGCAC
MTF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	38	51	-	6.10976	7.28e-05	0.5	GGCGCGCCCGGCAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	2	21	-	3.47706	7.28e-05	0.0667	ACCCACCTCAGCAGATCTCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	2	21	-	3.47706	7.28e-05	0.0667	ACCCACCTCAGCAGATCTCA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	11	24	+	11.0385	7.28e-05	0.223	GGACAGTGATTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	11	24	+	11.0385	7.28e-05	0.223	GGACAGTGATTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	13	26	-	11.0385	7.28e-05	0.223	GGACAGTGATTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	13	26	-	11.0385	7.28e-05	0.223	GGACAGTGATTCAG
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	20	33	-	11.0385	7.28e-05	0.223	GGCCGCTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	82	95	+	11.0385	7.28e-05	0.223	GGCCGCTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	82	95	+	11.0385	7.28e-05	0.223	GGCCGCTGACTCAG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	55	68	+	10.1154	7.28e-05	0.0266	CGGACGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	55	68	+	10.1154	7.28e-05	0.0266	CGGACGCCGCCGCG
EGR1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	47	60	-	10.1154	7.28e-05	0.0266	CGGACGCCGCCGCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	62	72	+	10.3448	7.28e-05	0.0234	CCCACCCCCAT
NRF1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	12	22	-	9.87273	7.28e-05	0.0214	GCACACGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	38	48	+	9.87273	7.28e-05	0.0214	GAGGAGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	58	68	+	9.87273	7.28e-05	0.0214	GAGGAGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	79	89	-	9.87273	7.28e-05	0.0214	ACGCCCGCCCA
Rarb	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	13	28	-	-4.53448	7.28e-05	1	TTGGGTGGAAGGGCCA
Rarb	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	13	28	-	-4.53448	7.28e-05	1	TTGGGTGGAAGGGCCA
Rarb	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	13	28	-	-4.53448	7.28e-05	1	TTGGGTGGAAGGGCCA
Rarb	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	37	52	-	-4.53448	7.28e-05	1	TTGGGTGGAAGGGCCA
NR1H2::RXRA	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	10	26	+	-5.65169	7.28e-05	1	TTAGGACAAAGCTCTAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	8	25	+	-14.9342	7.28e-05	0.0538	GAGAGGAAGCCCGGGAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	8	25	+	-14.9342	7.28e-05	0.0538	GAGAGGAAGCCCGGGAAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	40	57	+	-14.9342	7.28e-05	0.0538	GGGAGGGAGGCACCCCGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	58	75	-	-14.9342	7.28e-05	0.0538	GGGAGGGAGGCACCCCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	13	27	-	9.2	7.28e-05	0.122	GCGGGTCGGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	13	27	-	9.2	7.28e-05	0.122	GCGGGTCGGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	24	38	-	9.2	7.28e-05	0.122	GCGGGTCGGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	24	38	-	9.2	7.28e-05	0.122	GCGGGTCGGGGGCGG
Bcl6	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	83	96	+	10.6452	7.28e-05	0.471	TTTCCTAAATAGAC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	32	+	9.68966	7.28e-05	0.0554	CGCCTTCCCGGCA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	29	-	9.68966	7.28e-05	0.0554	CCCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	22	34	-	9.68966	7.28e-05	0.0554	GGCCGTCGGGGGG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	36	48	-	9.68966	7.28e-05	0.0554	GGCCGCCGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	59	71	+	9.68966	7.28e-05	0.0554	CGCCCGCCCGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	62	74	+	9.68966	7.28e-05	0.0554	CCCCCCGCAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	59	71	-	9.68966	7.28e-05	0.0554	CGCCGGGCGGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	81	93	+	9.68966	7.28e-05	0.0554	GGCCGTCGGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	83	95	-	9.68966	7.28e-05	0.0554	CGCCTTCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	83	95	-	9.68966	7.28e-05	0.0554	CGCCTTCCCGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	83	95	-	9.68966	7.28e-05	0.0554	CGCCTTCCCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	83	95	-	9.68966	7.28e-05	0.0554	CGCCTTCCCGGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	97	109	-	9.68966	7.28e-05	0.0554	TGCCGCAGAGGCG
Id2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	20	27	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	21	28	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	23	30	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	30	37	-	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	30	37	-	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	42	49	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	66	73	-	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	80	87	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	80	87	+	12.623	7.28e-05	0.318	ACACGTGG
Id2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	100	107	-	12.623	7.28e-05	0.318	ACACGTGG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	23	36	+	10.7465	7.28e-05	0.281	AGGAAAGGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	23	36	+	10.7465	7.28e-05	0.281	AGGAAAGGGAAGTC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	8	21	-	10.7465	7.28e-05	0.281	AGGAAAGGGAAGTC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	+	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	+	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	-	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	-	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	-	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	-	11.3049	7.28e-05	0.185	GTCATGTGAT
TFEC	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	+	11.3049	7.28e-05	0.185	GTCATGTGAT
HINFP	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	32	43	-	10.5606	7.28e-05	0.109	CAGCCTCCGCCA
HINFP	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	72	83	+	10.5606	7.28e-05	0.109	CAGCCTCCGCCA
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	62	71	+	10.8776	7.28e-05	0.972	CCAAGGGCAC
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	62	71	+	10.8776	7.28e-05	0.972	CCAAGGGCAC
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	62	71	+	10.8776	7.28e-05	0.972	CCAAGGGCAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	90	99	+	10.8776	7.28e-05	0.972	CCAAGGGCAC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	90	99	+	10.8776	7.28e-05	0.972	CCAAGGGCAC
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	107	-	10.6897	7.28e-05	0.14	CCCACCTGCT
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	107	-	10.6897	7.28e-05	0.14	CCCACCTGCT
FOS	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	22	32	+	11.3617	7.28e-05	0.259	TTTGAGTCATT
FOS	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	23	33	-	11.3617	7.28e-05	0.259	TTTGAGTCATT
FOS	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	82	92	+	11.3617	7.28e-05	0.259	TTTGAGTCATT
FOS	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	83	93	-	11.3617	7.28e-05	0.259	TTTGAGTCATT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	2	12	+	10.7069	7.28e-05	0.0506	CCGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	2	12	+	10.7069	7.28e-05	0.0506	CCGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	2	12	+	10.7069	7.28e-05	0.0506	CCGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	2	12	+	10.7069	7.28e-05	0.0506	CCGCGCGAGGC
E2F4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	19	29	+	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	11	21	-	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	11	21	-	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	32	42	+	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	32	42	+	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	53	63	-	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	86	96	-	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	86	96	-	10.7069	7.28e-05	0.0506	GGGCGGGGGCC
E2F4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	103	113	-	10.7069	7.28e-05	0.0506	CCGCGCGAGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	10	19	+	9.91129	7.29e-05	0.0516	GTCGCGAGCC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	10	19	-	9.91129	7.29e-05	0.0516	GGCTCGCGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	93	102	+	9.91129	7.29e-05	0.0516	GTCTCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	93	102	+	9.91129	7.29e-05	0.0516	GTCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	93	102	-	9.91129	7.29e-05	0.0516	GGCGCGAGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	93	102	-	9.91129	7.29e-05	0.0516	GGCGCGAGAC
MLXIPL	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	11.4545	7.29e-05	0.293	AACACGTGAG
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	11.4545	7.29e-05	0.293	AACACGTGAG
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	11.4545	7.29e-05	0.293	AACACGTGAG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	11.4545	7.29e-05	0.293	AACACGTGAG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	11.4545	7.29e-05	0.293	AACACGTGAG
Gata4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	65	75	+	11.4483	7.29e-05	1	TCTTATCTTGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	87	100	-	5.38776	7.29e-05	0.0744	GGGAGGCTCAGGGG
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889733..97889847,+__150.1.0.0	82	94	+	8.06897	7.29e-05	0.174	TACCCGGATGGAA
E2F6	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	7	17	-	10.9655	7.29e-05	0.0733	TAGAGGGAAGC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	20	32	-	9.81967	7.29e-05	0.0644	AGCCTGCAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	43	55	+	9.81967	7.29e-05	0.0644	AGCCCTCTGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	43	55	+	9.81967	7.29e-05	0.0644	AGCCCTCTGGGGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	71	80	+	10.5596	7.29e-05	0.0553	ACCCCCCCGA
GLIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	23	36	-	3.51515	7.29e-05	0.379	CGCCCCCCAGGCCG
GLIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	23	36	-	3.51515	7.29e-05	0.379	CGCCCCCCAGGCCG
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	55	+	3.51515	7.29e-05	0.379	CGCCCCCCAGGCCG
GLIS3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	62	75	+	3.51515	7.29e-05	0.379	CGCCCCCTACGTTC
Myog	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	45	+	11.6531	7.29e-05	0.173	GGCAGGTGGGA
Myog	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	70	80	-	11.6531	7.29e-05	0.173	GGCAGGTGGGA
EGR3	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	12	26	+	6.13793	7.29e-05	0.0417	CTACTCCCCCTCAGC
EGR3	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	33	47	+	6.13793	7.29e-05	0.0417	CCACGCCTCCTCCTT
EGR3	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	68	82	-	6.13793	7.29e-05	0.0417	CCACGCCTCCTCCTT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	89	103	+	6.13793	7.29e-05	0.0417	CTCCACCCAGGCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	89	103	+	6.13793	7.29e-05	0.0417	CTCCACCCAGGCGCA
SP2	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	11	25	-	10.2414	7.29e-05	0.0158	GCACCGCCTTCTAGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	55	69	+	10.2414	7.29e-05	0.0158	GGCCTGCCCTCCAGC
SP2	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	90	104	+	10.2414	7.29e-05	0.0158	GCACCGCCTTCTAGG
TFAP4	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	43	52	+	10.7091	7.29e-05	0.655	CTCAGCTGTG
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	+	10.7091	7.29e-05	0.655	TACAGCTGTC
BATF3	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	9	22	+	0.606061	7.29e-05	0.229	GGACGACGTCAACA
BATF3	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	93	106	-	0.606061	7.29e-05	0.229	GGACGACGTCAACA
SREBF1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	78	87	-	11.1098	7.29e-05	0.472	ATCACGCGAG
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	28	37	+	11.1098	7.29e-05	0.472	ATCACGCGAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	28	37	+	11.1098	7.29e-05	0.472	ATCACGCGAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	28	37	+	11.1098	7.29e-05	0.472	ATCACGCGAG
E2F1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	1	12	-	10.8361	7.29e-05	0.447	TTTGGCGGCCAG
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	56	68	-	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	56	68	-	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	56	68	-	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	56	68	-	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	56	68	-	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
NFKB1	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	47	59	+	1.87755	7.29e-05	0.253	AGCGGAAACCCCT
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	78	89	-	9.66327	7.29e-05	0.189	GGTATGGGGCAG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	78	89	-	9.66327	7.29e-05	0.189	GGTATGGGGCAG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	94	104	+	11.5714	7.3e-05	0.191	CGCAGCTGAAG
JUNB	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	22	32	+	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	50	60	+	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:150586045..150586159,+__2552.1.0.0	82	92	+	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	WILDTYPE__Enhancer.flip.sense__chr1:150586045..150586159,-__2123.1.0.0	23	33	-	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	55	65	-	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	55	65	-	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	55	65	-	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	55	65	-	10.898	7.3e-05	0.226	AAATGACTCAA
JUNB	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	83	93	-	10.898	7.3e-05	0.226	AAATGACTCAA
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	85	95	+	11.0758	7.3e-05	0.383	AGACGCCATTA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	85	95	+	11.0758	7.3e-05	0.383	AGACGCCATTA
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	85	95	+	11.0758	7.3e-05	0.383	AGACGCCATTA
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	21	31	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	21	31	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	34	44	+	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	71	81	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	71	81	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	71	81	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	71	81	-	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	84	94	+	9.85455	7.3e-05	0.0214	CCGCCGGCCCA
ETV3	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	31	+	11.0141	7.3e-05	0.167	ACCGGAAGGA
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	32	45	-	7.3	7.3e-05	0.215	CCGTGGCGTCACAA
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	32	45	-	7.3	7.3e-05	0.215	CCGTGGCGTCACAA
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	34	47	+	7.3	7.3e-05	0.215	CCGTGGCGTCACAA
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	34	47	+	7.3	7.3e-05	0.215	CCGTGGCGTCACAA
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	25	36	-	10.2069	7.3e-05	0.33	GCGCCCACCGGG
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	25	36	-	10.2069	7.3e-05	0.33	GCGCCCACCGGG
TCF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	20	29	-	11.9592	7.3e-05	0.422	GACACCTGGC
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	20	29	-	11.9592	7.3e-05	0.422	GACACCTGGC
TCF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	20	29	-	11.9592	7.3e-05	0.422	GACACCTGGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	89	99	-	11.2	7.3e-05	0.068	TGGCTTCCGCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	89	99	-	11.2	7.3e-05	0.068	TGGCTTCCGCT
ETV4	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	11.4138	7.3e-05	0.126	AACGGAAGCA
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	11.4138	7.3e-05	0.126	AACGGAAGCA
ETV4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	11.4138	7.3e-05	0.126	AACGGAAGCA
RFX4	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	4	19	+	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	+	9.75758	7.3e-05	0.34	AGTTTCCACAGAAACT
RFX4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	+	9.75758	7.3e-05	0.34	AGTTTCCACAGAAACT
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
RFX4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	96	111	-	9.75758	7.3e-05	0.34	TGTAGCCTAGGATACA
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	79	93	-	9.40909	7.3e-05	0.331	GAGTTTTCGTTTTCC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	10	23	-	9.94828	7.3e-05	0.292	CCTGCCACGGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	40	53	-	9.94828	7.3e-05	0.292	AGTGCCACAGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	40	53	-	9.94828	7.3e-05	0.292	AGTGCCACAGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	77	90	-	9.94828	7.3e-05	0.292	GCCTCCACAACAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	77	90	-	9.94828	7.3e-05	0.292	GCCTCCACAACAAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	24	37	+	9.94828	7.3e-05	0.292	CCTGCCACGGAAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	86	99	+	9.94828	7.3e-05	0.292	GGCGTCATGGCGGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	86	99	+	9.94828	7.3e-05	0.292	GGCGTCATGGCGGC
GATA2	WILDTYPE__mrna.noflip.NA__chr17:62084213..62084327,-__1040.1.0.0	46	59	+	11.4545	7.3e-05	1	CCCTGCTTATCAGC
RARA(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	42	58	-	2.95082	7.3e-05	0.563	GGGCCATCCGGGGTGCA
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	57	73	+	2.95082	7.3e-05	0.563	GGGCCATCCGGGGTGCA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	38	55	+	-14.9605	7.31e-05	0.0538	GGAAGAGGAGGAGGGAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	46	63	+	-14.9605	7.31e-05	0.0538	GGAAGAGGAGGAGGGAGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	52	69	-	-14.9605	7.31e-05	0.0538	GGAAGAGGAGGAGGGAGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	60	77	-	-14.9605	7.31e-05	0.0538	GGAAGAGGAGGAGGGAGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	18	29	-	11.1091	7.31e-05	0.0924	CGCCGGCAGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	18	29	-	11.1091	7.31e-05	0.0924	CGCCGGCAGGCA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	16	29	+	1.46809	7.31e-05	0.48	TGAGTTAAAGTTTA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	16	29	+	1.46809	7.31e-05	0.48	TGAGTTAAAGTTTA
RXRG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	78	91	-	1.46809	7.31e-05	0.48	GGGGTGAAAGTTGC
MSC	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	+	10.0488	7.31e-05	0.569	GACAGCTGCG
MSC	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	-	10.0488	7.31e-05	0.569	GACAGCTGCG
MSC	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	-	10.0488	7.31e-05	0.569	GACAGCTGCG
SP4	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	8	24	-	3.52727	7.31e-05	0.0314	TTCCCCCCGCCCCATAT
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	38	51	+	10.6061	7.31e-05	0.065	GGGGCCTCAGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	26	39	-	10.6061	7.31e-05	0.065	CACCGTGGGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	30	43	-	10.6061	7.31e-05	0.065	GGGGCCTCAGCCTT
Zfx	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	72	85	+	10.6061	7.31e-05	0.065	GGGGCCTCAGCCTT
Zfx	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	76	89	+	10.6061	7.31e-05	0.065	CACCGTGGGGCCTC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	7	21	-	7.09211	7.31e-05	0.263	GCAGTGACTCACCCA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	7	21	-	7.09211	7.31e-05	0.263	GCAGTGACTCACCCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	65	79	+	7.09211	7.31e-05	0.263	GCCAGGACTCAGCGC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	65	79	+	7.09211	7.31e-05	0.263	GCCAGGACTCAGCGC
Bach1::Mafk	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	94	108	+	7.09211	7.31e-05	0.263	GCAGTGACTCACCCA
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	98	112	+	7.09211	7.31e-05	0.263	CAGGTGACCCAGCAG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	+	11.3404	7.31e-05	0.259	TATGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	+	11.3404	7.31e-05	0.259	TATGACTCAGC
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	70	87	-	8.34615	7.31e-05	0.667	TCCAGGTCAGGGCACGGC
TP73	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	70	87	-	8.34615	7.31e-05	0.667	TCCAGGTCAGGGCACGGC
TP73	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	23	40	+	8.34615	7.31e-05	0.667	TGCGTGTACATTCATGCA
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	25	35	+	11.2041	7.31e-05	0.155	CTCACGTGACG
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	25	35	+	11.2041	7.31e-05	0.155	CTCACGTGACG
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	25	35	+	11.2041	7.31e-05	0.155	CTCACGTGACG
ZIC1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	40	53	+	6.10638	7.31e-05	0.102	CCCCCCCTCTTGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	62	75	-	6.10638	7.31e-05	0.102	CCCCCCCTCTTGCG
Tcf21	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	81	94	+	6.07895	7.31e-05	0.56	CCAGCAGCTGTTTT
JUND	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	14	24	+	10.2766	7.31e-05	0.237	AATGAGTCAGT
JUND	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	91	101	-	10.2766	7.31e-05	0.237	AATGAGTCAGT
NFKB2	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	15	27	-	8	7.31e-05	0.264	CGGGAAAGCACCG
NFKB2	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	88	100	+	8	7.31e-05	0.264	CGGGAAAGCACCG
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	45	54	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	45	54	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	45	54	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	45	54	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	113	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	113	-	11.5574	7.31e-05	0.389	GCCACCTGCC
ID4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	61	70	+	11.5574	7.31e-05	0.389	GCCACCTGCC
Gfi1b	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	25	35	+	11.1034	7.31e-05	0.588	AAACCTCTGTA
MAFG	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	8	28	+	9.64286	7.31e-05	1	GTGATGACGTCTCAGCGACAT
IRF7	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	68	81	-	8.46774	7.31e-05	0.731	CTGAAAGAGAAAAC
E2F7	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	32	45	-	-5	7.31e-05	1	TCCTCCCGCCAACC
RREB1	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	16	35	-	3.45872	7.32e-05	0.0667	CCTCCCCTCACCAACCAATC
RREB1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	74	93	-	3.45872	7.32e-05	0.0667	CCTCCAATCGCCACACGCCA
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	22	41	+	3.45872	7.32e-05	0.0667	CCTCCAATCGCCACACGCCA
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	22	41	+	3.45872	7.32e-05	0.0667	CCTCCAATCGCCACACGCCA
FOXC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	44	54	-	11.32	7.32e-05	1	TATGTCAACAG
RXRA::VDR	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	15	29	+	5.75229	7.32e-05	1	GCGCCAATGAGTTCA
RARA	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	55	72	+	-9.89394	7.32e-05	1	GAGCTCAAGAGGGCAGGC
RARA	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	43	60	-	-9.89394	7.32e-05	1	GAGCTCAAGAGGGCAGGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.1.0	36	46	+	11.1091	7.32e-05	0.77	GGGGTTTAAGC
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.0.0	36	46	+	11.1091	7.32e-05	0.77	GGGGTTTAAGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.2.0	36	46	+	11.1091	7.32e-05	0.77	GGGGTTTAAGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.0	36	46	+	11.1091	7.32e-05	0.77	GGGGTTTAAGC
Spz1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.1	36	46	+	11.1091	7.32e-05	0.77	GGGGTTTAAGC
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	80	92	+	10.1475	7.32e-05	0.0589	CCCCTGGCGGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	23	35	-	10.1475	7.32e-05	0.0589	CCCCTGGCGGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	92	104	-	10.1475	7.32e-05	0.0589	GCCCCGGCGGGGG
HES7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	26	37	-	3.08621	7.32e-05	0.2	AGGCGCGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	26	37	-	3.08621	7.32e-05	0.2	AGGCGCGCGCCG
HES7	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	78	89	+	3.08621	7.32e-05	0.2	AGGCGCGCGCCG
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	28	39	-	6.57143	7.32e-05	0.219	TGTGATGTCACT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	22	34	-	10.6393	7.32e-05	0.359	CTGGCTCACGCCT
FOXC2	WILDTYPE__Lincrna.noflip.NA__chr6:86387048..86387162,-__759.1.0.0	36	47	-	11.2772	7.32e-05	1	TAAGCAAACAGA
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	88	102	+	-2.94545	7.32e-05	0.668	AGCCAAACTGAATCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	23	34	+	11.1455	7.32e-05	0.0577	CGCCCGGAGGGG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	29	40	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	32	43	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	32	43	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	32	43	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	23	34	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	23	34	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	34	45	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	34	45	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	34	45	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	34	45	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	48	+	11.1455	7.32e-05	0.0577	CGCCTCCGGCCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	48	+	11.1455	7.32e-05	0.0577	CGCCTCCGGCCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	40	51	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	54	65	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	65	+	11.1455	7.32e-05	0.0577	CGCCTCCGGCCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	65	+	11.1455	7.32e-05	0.0577	CGCCTCCGGCCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	50	61	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	52	63	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	64	75	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	64	75	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	64	75	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	64	75	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	72	83	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	75	86	-	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	93	104	+	11.1455	7.32e-05	0.0577	CGCCCCGCGCCG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	36	53	+	-14.9737	7.32e-05	0.0538	GGAAGGCGGCCAGGACCG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	59	76	+	-14.9737	7.32e-05	0.0538	GGGGGGGGGCGTGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	65	82	+	-14.9737	7.32e-05	0.0538	GGGGGGGGGCGTGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	3	20	-	-14.9737	7.32e-05	0.0538	GGGGGGGGGCGTGGCAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	33	50	-	-14.9737	7.32e-05	0.0538	GGGGGGGGGCGTGGCAGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	33	50	-	-14.9737	7.32e-05	0.0538	GGGAGGAAGTCACGTGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	39	56	-	-14.9737	7.32e-05	0.0538	GGGGGGGGGCGTGGCAGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	+	9.80328	7.32e-05	0.0644	GCCCTTCCGGGCT
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	19	33	+	9.18571	7.32e-05	0.122	GCAGGGCGGAGGCCT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	39	48	-	10.5714	7.32e-05	0.0256	GGGGCGTGAC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	56	65	+	10.5714	7.32e-05	0.0256	GGGGCGTGAC
HSF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	19	31	-	8.81818	7.32e-05	1	ATCTAGCAGTTTC
HSF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	19	31	-	8.81818	7.32e-05	1	ATCTAGCAGTTTC
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	63	76	+	2.56364	7.32e-05	0.237	GGAATGAGGCAGTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	63	76	+	2.56364	7.32e-05	0.237	GGAATGAGGCAGTG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	63	76	+	2.56364	7.32e-05	0.237	GGAATGAGGCAGTG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	63	76	+	2.56364	7.32e-05	0.237	GGAATGAGGCAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	94	105	-	10.082	7.32e-05	0.136	CACCCGGAAAAG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	94	105	-	10.082	7.32e-05	0.136	CACCCGGAAAAG
Myog	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	29	+	11.6122	7.32e-05	0.173	CGCAGCTGGCT
Myog	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	26	36	-	11.6122	7.32e-05	0.173	CGCAGCTGGCT
Myog	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	89	+	11.6122	7.32e-05	0.173	CGCAGCTGGCT
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	89	+	11.6122	7.32e-05	0.173	CGCAGCTGGCT
KLF14	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	19	32	-	8.58621	7.32e-05	0.0367	GTCCCCGCCTCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	80	93	+	8.58621	7.32e-05	0.0367	ACCCCCGCCCCTCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	80	93	+	8.58621	7.32e-05	0.0367	ACCCCCGCCCCTCG
KLF14	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	83	96	+	8.58621	7.32e-05	0.0367	GTCCCCGCCTCCCT
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	47	61	-	10.0172	7.32e-05	0.504	GGGCCGAAGGTCGGC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	47	61	-	10.0172	7.32e-05	0.504	GGGCCGAAGGTCGGC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	47	61	-	10.0172	7.32e-05	0.504	GGGCCGAAGGTCGGC
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	47	61	-	10.0172	7.32e-05	0.504	GGGCCGAAGGTCGGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	3	13	+	10.7213	7.32e-05	0.0705	CCGGAAACCCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	25	35	+	10.7213	7.32e-05	0.0705	CCGGAAACCGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	25	35	+	10.7213	7.32e-05	0.0705	CCGGAAACCGG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	63	73	+	10.7213	7.32e-05	0.0705	CCGGAAACCGG
Gabpa	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	102	112	-	10.7213	7.32e-05	0.0705	CCGGAAACCCC
GLIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	57	70	-	3.5	7.32e-05	0.379	CCCCCCATACAAAG
ELF1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	41	52	+	8.8	7.32e-05	0.127	GGCCCGGAAACG
ELF1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	63	74	-	8.8	7.32e-05	0.127	GGCCCGGAAACG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	3	18	-	-9.80769	7.32e-05	0.329	CCATCCCCAACGTTGG
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	70	85	-	-9.80769	7.32e-05	0.329	AGTCTCGCCACGGTGG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	42	+	9.67241	7.32e-05	0.0554	CGCCCTTCCGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	37	49	+	9.67241	7.32e-05	0.0554	CGCCGGCCGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	37	49	+	9.67241	7.32e-05	0.0554	CGCCGGCCGGGCG
Gfi1	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	49	58	+	10.9146	7.32e-05	0.548	CAAATCCCCG
Gfi1	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	57	66	-	10.9146	7.32e-05	0.548	CAAATCCCCG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	20	34	-	10.2	7.32e-05	0.109	GGCCGCCTGCCGGCT
ZIC4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	55	69	-	10.2	7.32e-05	0.109	CCTCCCCCGCCGAGT
ZIC4	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	73	87	-	10.2	7.32e-05	0.109	GGCCCCACGGTGCCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	28	42	+	10.2	7.32e-05	0.109	GGCCCCACGGTGCCC
ZIC4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	46	60	+	10.2	7.32e-05	0.109	CCTCCCCCGCCGAGT
ZIC4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	81	95	+	10.2	7.32e-05	0.109	GGCCGCCTGCCGGCT
Hoxd8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	1	17	-	10.7738	7.32e-05	1	CTCTTAATTAATTGATC
Hoxd8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	1	17	-	10.7738	7.32e-05	1	CTCTTAATTAATTGATC
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	37	51	+	10.2182	7.32e-05	0.33	AAGAAGGGAAAATTC
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	37	51	+	10.2182	7.32e-05	0.33	AAGAAGGGAAAATTC
PRDM1	WILDTYPE__mrna.noflip.NA__chr14:62203529..62203643,+__1020.1.0.0	56	70	-	10.2182	7.32e-05	0.33	AACAAGAGAAATTGG
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	62	80	-	10.4839	7.33e-05	0.674	TGCCCAGCTGAGACCTGTG
RARA::RXRA	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	12	28	-	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	32	48	-	9.61224	7.33e-05	0.368	GGGGCAGGGGCGGGGCG
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	32	48	-	9.61224	7.33e-05	0.368	GGGGCAGGGGCGGGGCG
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	32	48	-	9.61224	7.33e-05	0.368	GGGGCAGGGGCGGGGCG
RARA::RXRA	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	67	83	+	9.61224	7.33e-05	0.368	GGGGCAGGGGCGGGGCG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	87	103	+	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	87	103	+	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	87	103	+	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	87	103	+	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	87	103	+	9.61224	7.33e-05	0.368	GGGTCGCTGGCGGGTTA
HOXB13	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	45	54	-	11.1273	7.33e-05	1	CTTATAAAAC
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	48	57	-	11.1273	7.33e-05	1	CTTATAAAAC
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	49	58	-	11.1273	7.33e-05	1	CTTATAAAAC
HOXB13	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	50	59	-	11.1273	7.33e-05	1	CTTATAAAAC
HOXB13	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	61	70	+	11.1273	7.33e-05	1	CTTATAAAAC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	11.0385	7.33e-05	0.289	CACACGTGCA
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	11.0385	7.33e-05	0.289	CACACGTGCA
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	11.0385	7.33e-05	0.289	CACACGTGCA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	53	63	-	10.6897	7.33e-05	0.0506	GCGCGGCAAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	53	63	-	10.6897	7.33e-05	0.0506	GCGCGGCAAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	66	76	+	10.6897	7.33e-05	0.0506	GCGCGGCAAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	66	76	+	10.6897	7.33e-05	0.0506	GCGCGGCAAGG
Npas2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	-	11.7869	7.33e-05	0.333	TCCACGTGCT
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	-	11.7869	7.33e-05	0.333	TCCACGTGCT
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	11.7869	7.33e-05	0.333	GGCACGTGAC
Npas2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	11.7869	7.33e-05	0.333	GGCACGTGAC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	79	93	-	8.44262	7.33e-05	0.477	GTGACTCATCCTTCT
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	79	93	-	8.44262	7.33e-05	0.477	GTGACTCATCCTTCT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	34	48	+	8.44262	7.33e-05	0.477	GTGACTCATCCTTCT
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	34	48	+	8.44262	7.33e-05	0.477	GTGACTCATCCTTCT
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	5	23	+	10.3871	7.33e-05	0.15	AAACCCGCCCAGCCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	5	23	+	10.3871	7.33e-05	0.15	AAACCCGCCCAGCCGGGGC
PAX5	FLIPPED__Lincrna.flip.antisense__chr5:44808796..44808910,+__2411.1.0.0	80	98	+	10.3871	7.33e-05	0.15	AAACGCAGGAAACCACGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:44808796..44808910,-__698.1.0.0	17	35	-	10.3871	7.33e-05	0.15	AAACGCAGGAAACCACGAC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	40	58	-	10.3871	7.33e-05	0.15	GGGGCCGCTGGGCCGTGTC
PAX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	40	58	-	10.3871	7.33e-05	0.15	GGGGCCGCTGGGCCGTGTC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	81	99	-	10.3871	7.33e-05	0.15	GGGGCCGCTGGGCCGTGTC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	81	99	-	10.3871	7.33e-05	0.15	GGGGCCGCTGGGCCGTGTC
ETS1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	11.2931	7.33e-05	0.111	TCCGGAAATA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	11.2931	7.33e-05	0.111	TCCGGAAATA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	11.2931	7.33e-05	0.111	TCCGGAAATA
ETS1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	11.2931	7.33e-05	0.111	TCCGGAAATA
SP1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	6	16	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	7	17	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	20	30	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	21	31	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	19	29	-	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	19	29	-	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.1.0	22	32	-	10.7308	7.33e-05	0.018	AGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:137113580..137113694,-__1281.1.0.0	22	32	-	10.7308	7.33e-05	0.018	AGCCCGCCCTC
SP1	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	32	42	-	10.7308	7.33e-05	0.018	GCACCACCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	33	43	-	10.7308	7.33e-05	0.018	AGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	33	43	-	10.7308	7.33e-05	0.018	AGCCCGCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	44	54	+	10.7308	7.33e-05	0.018	CGCCCGCCCTT
SP1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	40	50	-	10.7308	7.33e-05	0.018	CGCCCGCCCTT
SP1	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	47	57	-	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	58	68	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	65	75	+	10.7308	7.33e-05	0.018	CGCCCGCCCTT
SP1	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	61	71	-	10.7308	7.33e-05	0.018	CGCCCGCCCTT
SP1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	72	82	+	10.7308	7.33e-05	0.018	AGCCCGCCCTC
SP1	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	73	83	+	10.7308	7.33e-05	0.018	GCACCACCCCC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	94	104	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	94	104	+	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	98	108	-	10.7308	7.33e-05	0.018	CCCCTGCCCCC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	99	109	-	10.7308	7.33e-05	0.018	CCCCTGCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	15	29	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	15	29	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	15	29	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	29	43	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	29	43	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	29	43	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	29	43	-	6.12069	7.33e-05	0.0417	CCGCGCCTCCGCCCC
EGR3	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	44	58	+	6.12069	7.33e-05	0.0417	GCTCGCCCGCGCGCG
EGR3	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	57	71	-	6.12069	7.33e-05	0.0417	GCTCGCCCGCGCGCG
MYF6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	55	+	10.3182	7.33e-05	1	AGCAGGTGTT
ATF7	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	17	30	+	7.28571	7.33e-05	0.215	GTGTGGCGTCACAC
ATF7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	63	76	+	7.28571	7.33e-05	0.215	GCGTTACGTAATTT
ZIC3	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	32	46	+	7.9	7.33e-05	0.118	CCACCCCTTCTGCGC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	36	50	+	7.9	7.33e-05	0.118	CCCCTCCCACTTCGC
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	89	103	+	7.9	7.33e-05	0.118	CCTCCCCCGCCGGGG
RXRB	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	42	-	0.381818	7.33e-05	0.546	AGAGGAAAAGGTCA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	14	31	+	-14.9868	7.33e-05	0.0538	GGAGGAGGCGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	57	74	+	-14.9868	7.33e-05	0.0538	GGAAGGACTGAGGGCGAA
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	91	104	-	10.629	7.33e-05	0.471	ATTCCTCAAGGGCT
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	91	104	-	10.629	7.33e-05	0.471	ATTCCTCAAGGGCT
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	91	104	-	10.629	7.33e-05	0.471	ATTCCTCAAGGGCT
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	91	104	-	10.629	7.33e-05	0.471	ATTCCTCAAGGGCT
GLIS2	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	49	62	+	7.96721	7.33e-05	0.185	TAACCCCCGCAAAT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	44	57	-	7.96721	7.33e-05	0.185	GGCCTCCCTCAGCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	44	57	-	7.96721	7.33e-05	0.185	GGCCTCCCTCAGCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	44	57	-	7.96721	7.33e-05	0.185	GGCCTCCCTCAGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	44	57	-	7.96721	7.33e-05	0.185	GGCCTCCCTCAGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	53	66	-	7.96721	7.33e-05	0.185	TAACCCCCGCAAAT
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	53	66	-	7.96721	7.33e-05	0.185	TAACCCCCGCAAAT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	20	35	+	10.1091	7.33e-05	0.0398	CTCCGCCCCCTCCTGC
EGR4	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	27	42	+	10.1091	7.33e-05	0.0398	CCCCGCCCCCTCCCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	30	45	-	10.1091	7.33e-05	0.0398	CTACGCCCCGGCCACG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	30	45	-	10.1091	7.33e-05	0.0398	CTACGCCCCGGCCACG
EGR4	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	55	70	-	10.1091	7.33e-05	0.0398	CCCCACCCCCGCTCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	62	77	-	10.1091	7.33e-05	0.0398	GCGCGCCCTCGCGCCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	62	77	-	10.1091	7.33e-05	0.0398	GCGCGCCCTCGCGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	62	77	-	10.1091	7.33e-05	0.0398	GCGCGCCCTCGCGCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	62	77	-	10.1091	7.33e-05	0.0398	GCGCGCCCTCGCGCCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	62	77	-	10.1091	7.33e-05	0.0398	GCGCGCCCTCGCGCCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	68	83	-	10.1091	7.33e-05	0.0398	GTCCGCCCCCGGCCCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	68	83	-	10.1091	7.33e-05	0.0398	GTCCGCCCCCGGCCCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	68	83	-	10.1091	7.33e-05	0.0398	GTCCGCCCCCGGCCCA
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	7	15	-	11.3023	7.34e-05	0.522	GTCAGGTGC
SNAI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	7	15	-	11.3023	7.34e-05	0.522	GTCAGGTGC
SNAI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	7	15	-	11.3023	7.34e-05	0.522	GTCAGGTGC
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	7	15	-	11.3023	7.34e-05	0.522	GTCAGGTGC
MEF2A	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	50	61	+	8.83871	7.34e-05	1	GCTATAAATACT
MEF2A	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	54	65	-	8.83871	7.34e-05	1	GCTATAAATACT
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	67	79	+	1.85714	7.34e-05	0.253	TGGGGATTTCCAG
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	66	86	+	4.89796	7.34e-05	0.227	TGCGCCACCGTGGCGAGACTC
Tcf12	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	77	+	11.551	7.34e-05	0.191	AGCAGCTGTTT
Tcf12	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	93	+	11.551	7.34e-05	0.191	AGCAGCTGTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	55	75	+	8.75806	7.34e-05	0.187	TTTCTCTTTCTTTTCCGGACC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	55	75	+	8.75806	7.34e-05	0.187	TTTCTCTTTCTTTTCCGGACC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	55	75	+	8.75806	7.34e-05	0.187	TTTCTCTTTCTTTTCCGGACC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	55	75	+	8.75806	7.34e-05	0.187	TTTCTCTTTCTTTTCCGGACC
TP53	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	33	50	+	6.30612	7.34e-05	0.979	GCCACGCCCCGGCGTGCT
TP53	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	65	82	-	6.30612	7.34e-05	0.979	GCCACGCCCCGGCGTGCT
Crx	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	89	99	-	11.1207	7.34e-05	1	AGTGGGATTAA
Crx	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	16	26	+	11.1207	7.34e-05	1	AGTGGGATTAA
Crx	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	16	26	+	11.1207	7.34e-05	1	AGTGGGATTAA
Crx	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	16	26	+	11.1207	7.34e-05	1	AGTGGGATTAA
Crx	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	16	26	+	11.1207	7.34e-05	1	AGTGGGATTAA
Crx	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	16	26	+	11.1207	7.34e-05	1	AGTGGGATTAA
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	58	71	+	8.91803	7.34e-05	0.365	TTTCCCAGGCGAAT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	91	104	-	8.91803	7.34e-05	0.365	CTTCCCCGGAGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	10	20	-	10.9388	7.34e-05	0.306	GTTCCTGGAAC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	10	20	-	10.9388	7.34e-05	0.306	GTTCCTGGAAC
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	51	61	+	10.9388	7.34e-05	0.306	GTTCCTGGAAC
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	51	61	+	10.9388	7.34e-05	0.306	GTTCCTGGAAC
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	53	63	-	10.9388	7.34e-05	0.306	CTTCCTAGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	53	63	-	10.9388	7.34e-05	0.306	CTTCCTAGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	53	63	-	10.9388	7.34e-05	0.306	CTTCCTAGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	53	63	-	10.9388	7.34e-05	0.306	CTTCCTAGAAG
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	91	101	+	10.9388	7.34e-05	0.306	TTTCTTGAAAT
Klf12	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	21	35	+	8.06557	7.34e-05	0.0705	GGCCCAGCCCTCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	24	38	-	8.06557	7.34e-05	0.0705	GCCCCCGCCCCCCAA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	61	75	+	8.06557	7.34e-05	0.0705	GCCCCCGCCCCCCAA
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	47	58	-	10.7286	7.34e-05	0.217	TCCGCCCACCCT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	95	106	-	10.7286	7.34e-05	0.217	GGCGCCCCCAGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	95	106	-	10.7286	7.34e-05	0.217	GGCGCCCCCAGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	95	106	-	10.7286	7.34e-05	0.217	GGCGCCCCCAGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	95	106	-	10.7286	7.34e-05	0.217	GGCGCCCCCAGG
Rarb(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	6	22	-	-2.75758	7.34e-05	0.861	ACGTCACGGAAGGCGCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	6	22	-	-2.75758	7.34e-05	0.861	ACGTCACGGAAGGCGCA
Rarb(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	93	109	+	-2.75758	7.34e-05	0.861	ACGTCACGGAAGGCGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	22	38	-	3.50909	7.34e-05	0.0314	CGGACTCCGCCCTCCTG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	22	38	-	3.50909	7.34e-05	0.0314	CGGACTCCGCCCTCCTG
SP4	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	22	38	-	3.50909	7.34e-05	0.0314	CGCACCACTCCCCTCCC
SP4	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	77	93	+	3.50909	7.34e-05	0.0314	CGCACCACTCCCCTCCC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	80	94	-	10.5769	7.34e-05	0.451	AGGGCACTTTGCCAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	12	32	-	9.46939	7.34e-05	0.0206	GGGGGTGGTGTGGTGAGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	12	32	-	9.46939	7.34e-05	0.0206	GGGGAAGGAAGCAGGAGGGTC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	12	32	-	9.46939	7.34e-05	0.0206	GGGGAAGGAAGCAGGAGGGTC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	13	33	-	9.46939	7.34e-05	0.0206	GGGGAAGAGGGAAGAGTGACA
ZNF263	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	21	41	-	9.46939	7.34e-05	0.0206	GGAGGGAAGGAGAAAGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	24	44	-	9.46939	7.34e-05	0.0206	CGGGGGGGGGGGGGGGTGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	32	52	-	9.46939	7.34e-05	0.0206	GGGGGGCGGGCGGAGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	32	52	-	9.46939	7.34e-05	0.0206	GGGGGGCGGGCGGAGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	32	52	-	9.46939	7.34e-05	0.0206	GGGGGGCGGGCGGAGGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	32	52	-	9.46939	7.34e-05	0.0206	GGGGGGCGGGCGGAGGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	40	60	-	9.46939	7.34e-05	0.0206	CGGGGAGGGGCTCGGGGAGGT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	40	60	-	9.46939	7.34e-05	0.0206	CGGGGAGGGGCTCGGGGAGGT
ZNF263	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	52	72	-	9.46939	7.34e-05	0.0206	GAGGGTGGGGGCTGGGGGAAT
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	64	84	-	9.46939	7.34e-05	0.0206	GAGTGAGAGTGAGGTAGGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	78	98	-	9.46939	7.34e-05	0.0206	GGTGGAAGGCACGCAAAAGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	88	108	-	9.46939	7.34e-05	0.0206	GGAGGGAAGGAGAAAGGAAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	7	27	+	9.46939	7.34e-05	0.0206	GGAGGGAAGGAGAAAGGAAGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	43	63	+	9.46939	7.34e-05	0.0206	GAGGGTGGGGGCTGGGGGAAT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.0	45	65	+	9.46939	7.34e-05	0.0206	GGGGAAGAGGGAAGAGTGACA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	45	65	+	9.46939	7.34e-05	0.0206	GGGGAAGAGGGAAGAGTGACA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	45	65	+	9.46939	7.34e-05	0.0206	GGGGAAGAGGGAAGAGTGACA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	74	94	+	9.46939	7.34e-05	0.0206	GGAGGGAAGGAGAAAGGAAGG
Six3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	33	49	+	10.2105	7.34e-05	1	TCAAAGGTATCAGCTTT
Six3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	33	49	+	10.2105	7.34e-05	1	TCAAAGGTATCAGCTTT
RFX3	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	4	19	+	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	96	111	-	9.07576	7.34e-05	0.389	TGTAGCCTAGGATACA
GLI2	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	43	54	+	10.1897	7.34e-05	0.33	TCGCCCACCCCG
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	61	72	-	10.1897	7.34e-05	0.33	TCGCCCACCCCG
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	61	72	-	10.1897	7.34e-05	0.33	TCGCCCACCCCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	57	66	-	10.6724	7.34e-05	0.14	CGCAGGTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	57	66	-	10.6724	7.34e-05	0.14	CGCAGGTGAG
NHLH1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	105	114	-	10.6724	7.34e-05	0.14	CGCAGGTGAG
NFKB2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	55	67	+	7.98485	7.35e-05	0.264	GCGGAAACCCCCT
NFKB2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	48	60	-	7.98485	7.35e-05	0.264	GCGGAAACCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	33	44	+	10.6842	7.35e-05	0.0346	TCCCCACCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	33	44	+	10.6842	7.35e-05	0.0346	TCCCCACCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	48	59	-	10.6842	7.35e-05	0.0346	CAAACTCCCACT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	48	59	-	10.6842	7.35e-05	0.0346	CAAACTCCCACT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	21	34	-	11.0192	7.35e-05	0.223	CCAGCATGAGTCAT
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	35	48	+	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	34	47	-	10.0962	7.35e-05	0.0267	CCTCCTCTCCCGGG
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	35	48	-	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	40	53	-	10.0962	7.35e-05	0.0267	GTGCCGCCGCCAGC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	43	56	-	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	59	72	+	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	67	80	+	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	68	81	+	10.0962	7.35e-05	0.0267	CCTCCTCTCCCGGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	76	89	+	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	76	89	+	10.0962	7.35e-05	0.0267	CCTCCTCTTCCTCC
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	57	67	-	10.5758	7.35e-05	1	GGAGTGTGAAG
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	57	67	-	10.5758	7.35e-05	1	GGAGTGTGAAG
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	57	67	-	10.5758	7.35e-05	1	GGAGTGTGAAG
TBX20	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	57	67	-	10.5758	7.35e-05	1	GGAGTGTGAAG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	25	36	-	3.06897	7.35e-05	0.2	GCGCACGTGGCA
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	40	+	3.06897	7.35e-05	0.2	GCGCACGTGGCA
IRF2	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	6	23	+	4.82569	7.35e-05	0.626	GGAAAGGGAAAGAATGGC
IRF2	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	25	42	+	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	31	48	+	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	31	48	+	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	31	48	+	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	37	54	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	37	54	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	46	63	-	4.82569	7.35e-05	0.626	GGAATCCGAAAGGGAAAA
IRF2	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	67	84	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	73	90	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	73	90	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	73	90	-	4.82569	7.35e-05	0.626	GGAAAGCGAGTGCAGACA
IRF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	80	97	-	4.82569	7.35e-05	0.626	GGAATCCGAAAGGGAAAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	50	67	+	-15	7.35e-05	0.0538	AGAAAGAGGGAGGGAGAC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	48	65	-	-15	7.35e-05	0.0538	AGAAAGAGGGAGGGAGAC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	64	81	-	-15	7.35e-05	0.0538	AGGAGGAGGAGAGGAGAG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	94	111	-	-15	7.35e-05	0.0538	GGGAGAAGGAAAAGCAAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	5	19	+	10.2241	7.35e-05	0.0159	TGCCCGCCCAGCGCT
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	5	19	+	10.2241	7.35e-05	0.0159	TGCCCGCCCAGCGCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	5	19	+	10.2241	7.35e-05	0.0159	TGCCCGCCCAGCGCT
SP2	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	37	51	+	10.2241	7.35e-05	0.0159	GCTGCGCCCCCCGGC
SP2	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	64	78	-	10.2241	7.35e-05	0.0159	GCTGCGCCCCCCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	65	79	-	10.2241	7.35e-05	0.0159	ACCCCACCTCTGTGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	65	79	-	10.2241	7.35e-05	0.0159	ACCCCACCTCTGTGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	95	109	-	10.2241	7.35e-05	0.0159	CCTCCTCCTTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	95	109	-	10.2241	7.35e-05	0.0159	CCTCCTCCTTCCTCC
SP2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	96	110	-	10.2241	7.35e-05	0.0159	TGCCCGCCCAGCGCT
Rarg(var.2)	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	14	30	+	-6.14545	7.35e-05	1	AAGGTAACCACAGGAAA
Rarg(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	85	101	-	-6.14545	7.35e-05	1	AAGGTAACCACAGGAAA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	8	18	+	10.8909	7.35e-05	0.0714	GCCCTGAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	55	-	10.8909	7.35e-05	0.0714	GCCCTGAGGCG
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	98	107	-	11.5	7.35e-05	0.859	CCCACCTGCT
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	98	107	-	11.5	7.35e-05	0.859	CCCACCTGCT
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	30	39	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	32	41	-	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	32	41	-	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	32	41	-	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	32	41	-	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	42	51	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	42	51	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	42	51	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	42	51	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	61	70	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	61	70	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	72	81	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	72	81	+	10.5229	7.35e-05	0.0553	CCTCCCCCAT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	8	17	-	10.3265	7.35e-05	0.888	ATTATGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	8	17	-	10.3265	7.35e-05	0.888	ATTATGCAAC
CEBPG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	31	40	-	10.3265	7.35e-05	0.888	ATTATGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	31	40	-	10.3265	7.35e-05	0.888	ATTATGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	40	49	+	10.3265	7.35e-05	0.888	ATTATGCAAC
CEBPG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	40	49	+	10.3265	7.35e-05	0.888	ATTATGCAAC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	78	88	-	11	7.35e-05	0.0758	TGCCGCAAGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	4	14	+	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	4	14	+	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	+	11.2	7.35e-05	0.0551	TGCCCGAGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	+	11.2	7.35e-05	0.0551	TGCCCGAGGGG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	25	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	32	42	+	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	24	34	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	24	34	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	41	51	-	11.2	7.35e-05	0.0551	CCCCTCAAGCT
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	52	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	52	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	52	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	52	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	52	-	11.2	7.35e-05	0.0551	CCCCCGCGGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	56	66	+	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	49	59	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	49	59	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	49	59	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	49	59	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	64	74	+	11.2	7.35e-05	0.0551	CCCCTCAAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	64	74	+	11.2	7.35e-05	0.0551	CCCCTCAAGCT
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	64	74	-	11.2	7.35e-05	0.0551	CGCCGAAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	64	74	-	11.2	7.35e-05	0.0551	CGCCGAAGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	81	91	+	11.2	7.35e-05	0.0551	CGCCCCCAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	78	88	-	11.2	7.35e-05	0.0551	TGCCGCAAGCA
TFAP2A	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	101	111	-	11.2	7.35e-05	0.0551	CGCCCCCAGCT
NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	13	23	+	5.40816	7.35e-05	0.359	AATGAGTCCTG
JUN	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	43	55	+	10.1224	7.35e-05	0.317	GGGGTGAGGTAAG
JUN	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	64	76	-	10.1224	7.35e-05	0.317	GGGGTGAGGTAAG
FOXP1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	23	37	-	10.8873	7.35e-05	0.35	AAAGGGAAAAAAAAA
ELF4	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	32	-	8.88525	7.35e-05	0.115	GAACCGGAAGAG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	39	-	8.88525	7.35e-05	0.115	GAACCGGAAGAG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	27	40	-	3.48485	7.36e-05	0.379	CACCCCCCCCGCCG
RREB1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	24	43	+	3.44037	7.36e-05	0.067	CCCCCGCCCGCCCCGCCCCC
SPI1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	60	-	2.54545	7.36e-05	0.237	AAGAACCGGAAGCC
Zfx	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	28	41	+	10.5909	7.36e-05	0.0653	GGAAGTTCGGCCTA
Zfx	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	74	87	-	10.5909	7.36e-05	0.0653	GGAAGTTCGGCCTA
ERF	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	42	51	+	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	54	63	+	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	61	-	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	73	-	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	73	-	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	108	-	10.8857	7.36e-05	0.113	AGCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	108	-	10.8857	7.36e-05	0.113	AGCGGAAGTC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	3	13	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	3	13	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	45	55	+	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	54	64	+	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	102	112	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	102	112	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	102	112	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
FOS	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	102	112	-	11.3191	7.36e-05	0.259	AGTGAGTCAGC
TCF7L2	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	48	61	+	10.9455	7.36e-05	1	GAAGAAGAAAGGGA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	64	78	-	10.7117	7.36e-05	0.188	ATGGCGGAGAGGGCA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	48	59	+	11.0612	7.36e-05	0.0866	TGCCCAGAGCCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	56	67	-	11.0612	7.36e-05	0.0866	TGCCCAGAGCCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	9.90323	7.36e-05	0.0516	GTCACGTGAC
Foxo1	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	27	37	+	11.431	7.36e-05	0.902	ACCTGTTTCCC
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	54	64	+	11.431	7.36e-05	0.902	TTTTGTTTTCA
ZIC1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	52	65	+	6.08511	7.36e-05	0.102	TACCCCCTCCTGCC
ZIC1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	61	74	+	6.08511	7.36e-05	0.102	TCCCGCCCGTTGTC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	45	56	-	10.3966	7.36e-05	0.365	CCGCCCACCCTA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	45	56	-	10.3966	7.36e-05	0.365	CCGCCCACCCTA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	20	34	+	9.17143	7.36e-05	0.122	AAGGTGTAGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	20	34	+	9.17143	7.36e-05	0.122	AAGGTGTAGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	18	32	-	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	18	32	-	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	18	32	-	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	39	53	+	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	39	53	+	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	39	53	+	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
NR2C2	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	83	97	+	9.17143	7.36e-05	0.122	GCGGGGGGGGGGTTA
TEAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.1.0	35	44	-	11.2258	7.36e-05	0.799	AGCATTCCTT
TEAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.0.0	35	44	-	11.2258	7.36e-05	0.799	AGCATTCCTT
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	31	41	-	11.2885	7.36e-05	0.401	CTGATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	71	81	-	11.2885	7.36e-05	0.401	AGAATGAGTGA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	97	107	+	11.2885	7.36e-05	0.401	AGAATGAGTGA
Myod1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	53	+	11.5714	7.36e-05	0.183	GGCAGCTGCGATA
KLF13	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	62	79	+	4.34483	7.36e-05	0.318	AGGACAGGCCCCTGGGCC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	36	53	-	4.34483	7.36e-05	0.318	AGGACAGGCCCCTGGGCC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	36	53	-	4.34483	7.36e-05	0.318	AGGACAGGCCCCTGGGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	33	50	+	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	33	50	+	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	33	50	+	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	33	50	+	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	58	75	+	-15.0132	7.36e-05	0.0538	AGGAGGAGAGGAGGAGAG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	60	77	+	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	92	109	+	-15.0132	7.36e-05	0.0538	AGGAGGAGAGGAGGAGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	38	55	-	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	38	55	-	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	38	55	-	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	65	82	-	-15.0132	7.36e-05	0.0538	GAAGTGGGGGGAGGAGGA
Pax6	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	101	114	+	10.4667	7.36e-05	1	GCCACGCACGACTG
MTF1	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	31	44	+	6.07317	7.36e-05	0.5	GCTGCAAACGGCGG
MTF1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	34	47	+	6.07317	7.36e-05	0.5	TGCGCACCCTGCGC
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	35	48	+	6.07317	7.36e-05	0.5	GCCGCACACAGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	35	48	+	6.07317	7.36e-05	0.5	GCCGCACACAGCCC
MTF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	33	46	-	6.07317	7.36e-05	0.5	GCCGCACACAGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	33	46	-	6.07317	7.36e-05	0.5	GCCGCACACAGCCC
MTF1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	68	81	-	6.07317	7.36e-05	0.5	TGCGCACCCTGCGC
MTF1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	69	82	-	6.07317	7.36e-05	0.5	TTTGCACTCAACAA
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	5	15	+	10.3276	7.36e-05	0.0235	CCCCCACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	20	30	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	20	30	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	20	30	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	44	+	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	44	+	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	32	42	-	10.3276	7.36e-05	0.0235	CCCCCACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	47	57	-	10.3276	7.36e-05	0.0235	GACACGCCCAG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	50	60	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	50	60	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	50	60	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	50	60	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	50	60	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	51	61	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	51	61	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	51	61	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	51	61	-	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	72	+	10.3276	7.36e-05	0.0235	GCCCCACCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	72	+	10.3276	7.36e-05	0.0235	GCCCCACCCCA
REST	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	43	63	-	4.88776	7.36e-05	0.227	CCCCGCACTCTGGCGGGCTCC
EGR2	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	7	17	+	9.34483	7.36e-05	0.0858	CCGCCCCTGCA
EGR2	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	13	23	-	9.34483	7.36e-05	0.0858	CCGCCCCTGCA
EGR2	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	23	33	-	9.34483	7.36e-05	0.0858	GCTCCCACGCC
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	51	61	+	9.34483	7.36e-05	0.0858	CCTTCCACGCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	51	61	+	9.34483	7.36e-05	0.0858	CCTTCCACGCA
EGR2	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	92	102	+	9.34483	7.36e-05	0.0858	CCGCCCCTGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	98	108	-	9.34483	7.36e-05	0.0858	CCGCCCCTGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	98	108	-	9.34483	7.36e-05	0.0858	CCGCCCCTGCA
ETV6	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	32	-	11.1731	7.37e-05	0.114	ACCGGAAATA
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	75	84	-	11.1731	7.37e-05	0.114	CGGGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	75	84	-	11.1731	7.37e-05	0.114	CGGGGAAGTA
Sox1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	92	106	+	3.08621	7.37e-05	1	CACCATGCGATTGCC
Sox1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	92	106	+	3.08621	7.37e-05	1	CACCATGCGATTGCC
Sox1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	92	106	+	3.08621	7.37e-05	1	CACCATGCGATTGCC
Sox1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	92	106	+	3.08621	7.37e-05	1	CACCATGCGATTGCC
KLF14	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	9	22	-	8.56897	7.37e-05	0.0368	CACCCCTCCCCCCT
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	28	41	-	8.56897	7.37e-05	0.0368	GGCCCCGCCCCGGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	28	41	-	8.56897	7.37e-05	0.0368	GGCCCCGCCCCGGC
KLF14	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	93	106	+	8.56897	7.37e-05	0.0368	CACCCCTCCCCCCT
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	40	50	+	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	40	50	+	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	34	44	-	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	39	49	-	10.6724	7.37e-05	0.0506	ACGCGCGAAGC
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	39	49	-	10.6724	7.37e-05	0.0506	ACGCGCGAAGC
E2F4	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	51	61	+	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	54	64	-	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	71	81	+	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	71	81	-	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	71	81	-	10.6724	7.37e-05	0.0506	TGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	103	113	+	10.6724	7.37e-05	0.0506	ACGCGCGAAGC
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	103	113	+	10.6724	7.37e-05	0.0506	ACGCGCGAAGC
Sox6	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	47	56	+	11.8	7.37e-05	0.878	GCATTGTTTG
Sox6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	59	68	-	11.8	7.37e-05	0.878	GCATTGTTTG
Sox6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	59	68	-	11.8	7.37e-05	0.878	GCATTGTTTG
Gfi1b	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	46	56	-	11.0862	7.37e-05	0.588	TAACCACAGCT
SREBF2	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	2	11	+	11.0449	7.37e-05	0.871	ATGAGGTGAG
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	9	18	-	11.0449	7.37e-05	0.871	CTGGAGTGAC
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	9	18	-	11.0449	7.37e-05	0.871	CTGGAGTGAC
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	9	18	-	11.0449	7.37e-05	0.871	CTGGAGTGAC
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	9	18	-	11.0449	7.37e-05	0.871	CTGGAGTGAC
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	9	18	-	11.0449	7.37e-05	0.871	CTGGAGTGAC
HLF	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	-	11.4576	7.37e-05	1	GCTTACGTCACA
HLF	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	-	11.4576	7.37e-05	1	GCTTACGTCACA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	58	68	+	10.8776	7.37e-05	0.226	CACTGACTCAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	97	107	-	10.8776	7.37e-05	0.226	CACTGACTCAG
ELK4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	24	34	-	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	44	54	-	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	71	81	-	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	92	102	-	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	102	112	-	11.1818	7.37e-05	0.068	CTGCTTCCTGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	9	19	+	11.1818	7.37e-05	0.068	CTGCTTCCTGG
ELK4	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	13	23	+	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	67	77	+	11.1818	7.37e-05	0.068	TCACTTCCTCC
ELK4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	81	91	+	11.1818	7.37e-05	0.068	TCACTTCCTCC
Klf4	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	1	10	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	11	20	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	11	20	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	29	38	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	29	38	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	29	38	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	30	39	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	30	39	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	35	44	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	43	52	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	47	56	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	47	56	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	62	71	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	62	71	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	62	71	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	62	71	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	59	68	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	59	68	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	70	79	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	95	104	+	10.5612	7.37e-05	0.0256	AAGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	105	114	-	10.5612	7.37e-05	0.0256	AAGGCGGGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	52	62	-	10.9138	7.37e-05	0.074	GGGCGGCAAGG
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	4	18	+	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	4	18	+	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	4	18	+	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	4	18	+	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	43	57	-	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	58	72	+	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
HNF4G	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	97	111	-	10.5962	7.37e-05	0.341	AGGGGATAAGGGCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	24	38	-	6.10345	7.37e-05	0.0417	CCACTCCCCCACGCG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	27	41	-	6.10345	7.37e-05	0.0417	CACCGCCCCCATGCT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	27	41	-	6.10345	7.37e-05	0.0417	CACCGCCCCCATGCT
EGR3	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	55	69	+	6.10345	7.37e-05	0.0417	GGCCGCTCCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	63	77	-	6.10345	7.37e-05	0.0417	TGCCGCCGCCGCCAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.2439	7.37e-05	0.187	CACACGTGAT
RFX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	19	34	-	5.71429	7.37e-05	0.394	AGTTCCCATGACATCA
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	19	34	-	5.71429	7.37e-05	0.394	AGTTCCCATGACATCA
SCRT1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	55	69	-	6.98361	7.37e-05	0.922	CAGTCACAGGTTGTC
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	55	69	-	6.98361	7.37e-05	0.922	CAGTCACAGGTTGTC
ETV1	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	11.2727	7.37e-05	0.118	GCCGGAAACA
ETV1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	11.2727	7.37e-05	0.118	GCCGGAAACA
ETV1	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	11.2727	7.37e-05	0.118	GCCGGAAACA
ETV1	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	11.2727	7.37e-05	0.118	GCCGGAAACA
NEUROD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	34	43	-	11.3103	7.37e-05	1	AGCATATGCC
NEUROD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	34	43	-	11.3103	7.37e-05	1	AGCATATGCC
Arid3b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	45	-	11	7.37e-05	1	CTTTTAATTAC
Arid3b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	45	-	11	7.37e-05	1	CTTTTAATTAC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	20	32	+	9.65517	7.37e-05	0.0554	GCCCGCGAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	57	69	-	9.65517	7.37e-05	0.0554	CCCCTCCCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	57	69	-	9.65517	7.37e-05	0.0554	CCCCTCCCGGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	83	95	-	9.65517	7.37e-05	0.0554	GCCCGCGAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	83	95	-	9.65517	7.37e-05	0.0554	GCCCGCGAGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	-	9.65517	7.37e-05	0.0554	CGCCGCTCGGGCT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	14	28	-	7.88571	7.37e-05	0.118	CCCACCCCACCGCGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	14	28	-	7.88571	7.37e-05	0.118	CCCACCCCACCGCGG
ZIC3	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	31	45	-	7.88571	7.37e-05	0.118	TCCCTCCCCCGGCTC
ZIC3	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	70	84	+	7.88571	7.37e-05	0.118	TCCCTCCCCCGGCTC
MAX::MYC	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	45	55	+	10.2143	7.37e-05	0.343	GCTCACGTGGC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	29	40	+	2.27586	7.37e-05	0.298	GCGCACGTGGCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	25	36	-	2.27586	7.37e-05	0.298	GCGCACGTGGCA
HES5	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	98	109	-	2.27586	7.37e-05	0.298	TGACACGTGGGA
HEY1	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	11.4364	7.37e-05	0.173	GGCACGTGGT
ATF7	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	91	104	+	7.27143	7.37e-05	0.216	CAATGACCTCACAC
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	31	42	-	10.7143	7.37e-05	0.217	CCCGCCCACCCT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	46	57	-	10.7143	7.37e-05	0.217	CCCGCCCACCCT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	46	57	-	10.7143	7.37e-05	0.217	CCCGCCCACCCT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	46	57	-	10.7143	7.37e-05	0.217	CCCGCCCACCCT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	46	57	-	10.7143	7.37e-05	0.217	CCCGCCCACCCT
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr8:123440761..123440875,-__829.1.0.0	53	64	+	8.82258	7.37e-05	1	GCTAAAACTAAA
HEY2	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	11	20	-	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	21	30	+	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	80	+	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	80	+	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	80	+	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	80	+	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	71	80	-	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	85	94	-	10.8103	7.38e-05	0.207	GGCACCTGCG
HEY2	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	95	104	+	10.8103	7.38e-05	0.207	GGCACCTGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	69	+	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	69	+	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	69	+	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	69	+	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	69	+	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	14	26	-	10.1311	7.38e-05	0.0589	CCCCCTGGCGGCG
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	58	-	10.1311	7.38e-05	0.0589	TCCCGCCCAGGCA
INSM1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	54	65	-	9.62245	7.38e-05	0.189	GGGCAGGGGTTT
INSM1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	50	61	+	9.62245	7.38e-05	0.189	GGGCAGGGGTTT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	30	47	+	-15.0263	7.38e-05	0.0538	GCGAGGGGGGGGGGCAGG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	67	+	3.03448	7.38e-05	0.2	TGACACCTGTCA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	67	+	3.03448	7.38e-05	0.2	TGACACCTGTCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	67	+	3.03448	7.38e-05	0.2	TGACACCTGTCA
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	41	53	+	7.9697	7.38e-05	0.264	GGGGGAACCCCTC
NFKB2	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	49	61	+	7.9697	7.38e-05	0.264	CGGGTTAGCCCCA
NFKB2	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	54	66	-	7.9697	7.38e-05	0.264	CGGGTTAGCCCCA
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	79	89	+	10.2623	7.38e-05	0.183	GAACGGAAATC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	20	32	-	8.03448	7.38e-05	0.174	GAACCGGAAGAGG
GLI2	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	36	47	+	10.1724	7.38e-05	0.33	GGGACCACAGGG
GLI2	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	68	79	-	10.1724	7.38e-05	0.33	GGGACCACAGGG
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	7	16	+	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	41	50	+	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	58	+	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	58	+	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	56	65	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	56	65	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	64	73	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	64	73	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	64	73	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	71	80	-	9.36364	7.38e-05	0.254	CTCAGGTGAC
Klf12	FLIPPED__mrna.flip.antisense__chr6:49430931..49431045,+__2540.1.0.0	49	63	+	8.04918	7.38e-05	0.0705	GACACCGCCCTCCCT
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.1.0	52	66	-	8.04918	7.38e-05	0.0705	GACACCGCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:49430931..49431045,-__1671.1.0.0	52	66	-	8.04918	7.38e-05	0.0705	GACACCGCCCTCCCT
NFKB1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	13	25	-	1.83673	7.38e-05	0.253	TGGGGGTTCCTCC
NFKB1	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	47	59	-	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	56	68	+	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	56	68	+	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	56	68	+	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	56	68	+	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	56	68	+	1.83673	7.38e-05	0.253	AGGGGTTTCCGCT
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	90	102	+	1.83673	7.38e-05	0.253	TGGGGGTTCCTCC
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	90	102	+	1.83673	7.38e-05	0.253	TGGGGGTTCCTCC
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	90	102	+	1.83673	7.38e-05	0.253	TGGGGGTTCCTCC
PPARG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	62	81	-	6.83333	7.38e-05	1	CTGGCTCACTCACACCTAGT
PPARG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	62	81	-	6.83333	7.38e-05	1	CTGGCTCACTCACACCTAGT
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	64	72	-	11.4231	7.38e-05	0.538	AAACCGCCA
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	64	72	-	11.4231	7.38e-05	0.538	AAACCGCCA
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	105	113	-	11.4231	7.38e-05	0.538	AAACCGCCA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	105	113	-	11.4231	7.38e-05	0.538	AAACCGCCA
RUNX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	106	114	-	11.4231	7.38e-05	0.538	AAACCGCCA
RUNX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	106	114	-	11.4231	7.38e-05	0.538	AAACCGCCA
TGIF1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	99	110	+	-0.0384615	7.38e-05	0.932	TGTCAGATGTCA
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	13	26	-	3.4697	7.38e-05	0.379	GACGCCACACGTAG
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	46	66	-	8.74194	7.38e-05	0.187	GCACGCTTTCCCTTTTAACCA
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	46	66	-	8.74194	7.38e-05	0.187	GCACGCTTTCCCTTTTAACCA
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	+	11.8846	7.39e-05	0.298	AACACGTGTG
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	-	11.8846	7.39e-05	0.298	AACACGTGTG
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	-	11.8846	7.39e-05	0.298	AACACGTGTG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	-	11.8846	7.39e-05	0.298	AACACGTGTG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	-	11.8846	7.39e-05	0.298	AACACGTGTG
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	-	11.8846	7.39e-05	0.298	AACACGTGTG
EBF1	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	47	60	+	8.90164	7.39e-05	0.365	GGCCCCAGGAGACC
EBF1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	56	69	+	8.90164	7.39e-05	0.365	GGCCCCTTGAGACA
EBF1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	46	59	-	8.90164	7.39e-05	0.365	GGCCCCTTGAGACA
EBF1	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	55	68	-	8.90164	7.39e-05	0.365	GGCCCCAGGAGACC
ZBTB33	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	22	36	-	10.1061	7.39e-05	0.12	CCCCCGCGGGCCCCT
ZBTB33	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	23	37	-	10.1061	7.39e-05	0.12	GGCCCGCGACACCCC
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.0.0	20	34	+	10.2	7.39e-05	0.33	TGAAGATGAAAGAGA
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	20	34	+	10.2	7.39e-05	0.33	TGAAGATGAAAGAGA
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	32	46	+	10.2	7.39e-05	0.33	AAGCAGGGAGAGTCA
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	25	39	-	10.2	7.39e-05	0.33	AAGCAGGGAGAGTCA
MEOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	77	86	-	10.0891	7.39e-05	1	AGTAATTAGA
MEOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	77	86	-	10.0891	7.39e-05	1	AGTAATTAGA
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	53	64	+	11.0909	7.39e-05	0.0924	GGCCTCGGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	53	64	+	11.0909	7.39e-05	0.0924	GGCCTCGGGGCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	65	+	11.0909	7.39e-05	0.0924	AGCCTGCGGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	65	+	11.0909	7.39e-05	0.0924	AGCCTGCGGGGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	65	+	11.0909	7.39e-05	0.0924	AGCCTGCGGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	69	80	+	11.0909	7.39e-05	0.0924	CCCCCCTGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	69	80	+	11.0909	7.39e-05	0.0924	CCCCCCTGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	80	+	11.0909	7.39e-05	0.0924	AGCCTGCGGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	80	+	11.0909	7.39e-05	0.0924	AGCCTGCGGGGA
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	79	96	+	6.28571	7.39e-05	0.979	CACTTGCACTGTCTTGTT
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	79	96	+	6.28571	7.39e-05	0.979	CACTTGCACTGTCTTGTT
FOXC1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	7	17	+	11.3	7.39e-05	1	TAAGAAAACAA
FOXC1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	78	88	+	11.3	7.39e-05	1	TAAGAAAACAA
FOXC1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	27	37	-	11.3	7.39e-05	1	TAAGAAAACAA
FOXC1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	98	108	-	11.3	7.39e-05	1	TAAGAAAACAA
HOXD12	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	1	11	+	10.7049	7.39e-05	1	TGTCATAAAAA
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	1	10	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	1	10	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	1	10	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	1	10	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	13	22	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	27	36	+	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	27	36	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	67	76	-	10.5138	7.39e-05	0.0553	GCCCCCCTCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	93	102	+	10.5138	7.39e-05	0.0553	GCCCCCCTCC
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	24	35	+	11.012	7.39e-05	1	AGATGCAAATTC
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	24	35	+	11.012	7.39e-05	1	AGATGCAAATTC
POU3F1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	27	38	-	11.012	7.39e-05	1	AGATGCAAATTC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr5:162864260..162864374,-__670.1.0.0	23	37	-	10.1818	7.39e-05	0.109	GGCCCCCTACTGAAT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	56	70	-	10.1818	7.39e-05	0.109	GGCCCCCTACTGAAT
EHF	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	29	40	+	10.0656	7.39e-05	0.136	CTCCCGGAAGCC
GCM1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	93	103	-	10.6939	7.39e-05	0.531	CATGAGGGCGC
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	24	34	-	11.1837	7.39e-05	0.155	GTCACGTGAGA
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	24	34	-	11.1837	7.39e-05	0.155	GTCACGTGAGA
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	24	34	-	11.1837	7.39e-05	0.155	GTCACGTGAGA
USF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	97	107	+	11.1837	7.39e-05	0.155	AGCATGTGCCC
USF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	97	107	+	11.1837	7.39e-05	0.155	AGCATGTGCCC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	31	+	11.5306	7.39e-05	0.191	GGCAGCTGTGT
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	31	+	11.5306	7.39e-05	0.191	GGCAGCTGTGT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	31	+	11.5306	7.39e-05	0.191	GGCAGCTGTGT
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	31	+	11.5306	7.39e-05	0.191	GGCAGCTGTGT
Znf423	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	4	18	-	5.58427	7.4e-05	0.344	AGAATCCATGGTGCC
Znf423	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	97	111	+	5.58427	7.4e-05	0.344	AGAATCCATGGTGCC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	97	111	+	5.58427	7.4e-05	0.344	AGAATCCATGGTGCC
Znf423	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	97	111	+	5.58427	7.4e-05	0.344	AGAATCCATGGTGCC
Znf423	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	97	111	+	5.58427	7.4e-05	0.344	AGAATCCATGGTGCC
CREB1	WILDTYPE__Enhancer.noflip.NA__chr6:44026417..44026531,-__2109.1.0.0	3	10	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	5	12	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	5	12	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	8	15	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	1	8	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	8	15	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	21	28	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	21	28	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	21	28	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	23	30	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	23	30	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	24	31	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	24	31	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	20	27	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	35	42	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	47	54	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	57	64	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	50	57	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	56	63	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	67	74	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	61	68	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	62	69	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	73	80	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	73	80	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	84	91	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	84	91	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	87	94	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	94	101	-	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	102	109	+	11.3964	7.4e-05	0.196	TGAGGTCA
CREB1	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	107	114	+	11.3964	7.4e-05	0.196	TGAGGTCA
SPDEF	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	42	-	10.0545	7.4e-05	0.269	CCCCGGAAGTA
Hes1	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	8	17	+	9.9021	7.4e-05	0.12	GGCACACGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:149969767..149969881,-__1096.1.0.0	20	29	-	9.9021	7.4e-05	0.12	CGCACGCGGG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	68	77	-	9.9021	7.4e-05	0.12	CGCACGCGGG
Hes1	FLIPPED__mrna.flip.antisense__chr6:149969767..149969881,+__2465.1.0.0	86	95	+	9.9021	7.4e-05	0.12	CGCACGCGGG
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	32	45	+	11.1207	7.4e-05	0.342	CTGCCTGGAAACCT
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	58	71	+	11.1207	7.4e-05	0.342	CTGCCTGGAAACCT
NR3C1	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	63	79	+	4.89796	7.4e-05	1	TGGAACTTGAAGTTCTC
TFAP2A	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	12	22	+	11.1818	7.4e-05	0.0551	AGCCGCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	41	51	+	11.1818	7.4e-05	0.0551	CGCCCAGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	41	51	+	11.1818	7.4e-05	0.0551	CGCCCAGGGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	40	50	-	11.1818	7.4e-05	0.0551	CGCCGGGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	40	50	-	11.1818	7.4e-05	0.0551	CGCCGGGGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	64	74	+	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	64	74	+	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	64	74	+	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	85	95	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	85	95	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	85	95	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	85	95	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	91	101	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	91	101	-	11.1818	7.4e-05	0.0551	CGCTCCAGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	93	103	-	11.1818	7.4e-05	0.0551	AGCCGCAGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	100	110	-	11.1818	7.4e-05	0.0551	CGCCGGGGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	-	11.1273	7.4e-05	0.0577	AGCCTCGGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	5	16	-	11.1273	7.4e-05	0.0577	CCCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	5	16	-	11.1273	7.4e-05	0.0577	CCCCCCCAGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	47	58	+	11.1273	7.4e-05	0.0577	TCCCTGAGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	47	58	+	11.1273	7.4e-05	0.0577	TCCCTGAGGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	63	74	-	11.1273	7.4e-05	0.0577	AACCCGAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	82	93	+	11.1273	7.4e-05	0.0577	CGCCTCAAGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	71	82	-	11.1273	7.4e-05	0.0577	CCCCCCCAGCCC
TBX21	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	64	73	-	10.6909	7.4e-05	1	AAAGTGTGAG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	1	13	+	9.77049	7.4e-05	0.0644	AGCCTCAGGGGGT
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	34	46	+	9.77049	7.4e-05	0.0644	GGCCTCTGCGGCA
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	69	81	-	9.77049	7.4e-05	0.0644	GGCCTCTGCGGCA
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	+	11.051	7.4e-05	0.0866	GCCCCCGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	+	11.051	7.4e-05	0.0866	GCCCCCGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	+	11.051	7.4e-05	0.0866	GCCCCCGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	-	11.051	7.4e-05	0.0866	GCCCCCGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	-	11.051	7.4e-05	0.0866	GCCCCCGGGGCG
RFX5	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	7	22	+	6.44828	7.4e-05	0.36	TGTTGCCAGGGGCACC
MNT	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	+	12	7.4e-05	0.338	TCCACGTGAT
Nr2f6	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	9	22	-	8.5	7.4e-05	0.41	AGGGGCAGGGGTGA
Nr2f6	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	60	73	-	8.5	7.4e-05	0.41	AGGGGCAGGGGTGA
Nr2f6	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	42	55	+	8.5	7.4e-05	0.41	AGGGGCAGGGGTGA
Nr2f6	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	93	106	+	8.5	7.4e-05	0.41	AGGGGCAGGGGTGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	83	96	-	5.33673	7.4e-05	0.0744	GAGGCCATGGCGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	95	108	+	5.33673	7.4e-05	0.0744	GAGGATTAAGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	95	108	+	5.33673	7.4e-05	0.0744	GAGGATTAAGGGTG
PLAG1	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	96	109	+	5.33673	7.4e-05	0.0744	GGCGGCGAGGGGGA
Gmeb1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	6	22	-	10.6842	7.4e-05	0.668	GCGTTTGCGCAAGCGGT
Gmeb1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	48	64	-	10.6842	7.4e-05	0.668	GGGCTGACGCAAGAAGC
ZBTB18	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	42	54	-	9.47143	7.4e-05	0.731	TCGCCAGCTGTGA
ZBTB18	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	42	54	-	9.47143	7.4e-05	0.731	TCGCCAGCTGTGA
ZBTB18	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.0.0	83	95	-	9.47143	7.4e-05	0.731	TGCCCAGATGTCT
ZBTB18	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.1.0	83	95	-	9.47143	7.4e-05	0.731	TGCCCAGATGTCT
Sox17	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	81	89	+	11.5393	7.4e-05	1	TCCATTGTG
Sox17	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	26	34	-	11.5393	7.4e-05	1	TCCATTGTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	16	31	-	10.0909	7.4e-05	0.0398	TCCCTCCCACCCTGTG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	16	31	-	10.0909	7.4e-05	0.0398	TCCCTCCCACCCTGTG
EGR4	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	32	47	+	10.0909	7.4e-05	0.0398	CCCGCCCCCCGCACAT
EGR4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	22	37	-	10.0909	7.4e-05	0.0398	GCAGGCCCACCCTCTG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	38	53	+	10.0909	7.4e-05	0.0398	GCACACACACGCACAC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	38	53	+	10.0909	7.4e-05	0.0398	GCACACACACGCACAC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	38	53	+	10.0909	7.4e-05	0.0398	GCACACACACGCACAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	38	53	+	10.0909	7.4e-05	0.0398	GCACACACACGCACAC
EGR4	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	30	45	-	10.0909	7.4e-05	0.0398	GGCCGCGCACGCGCAC
EGR4	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	55	70	+	10.0909	7.4e-05	0.0398	CTCCGCCCGCCCGGCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	41	56	-	10.0909	7.4e-05	0.0398	CCCCTCCCCGGCACTC
EGR4	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	45	60	-	10.0909	7.4e-05	0.0398	CTCCGCCCGCCCGGCC
EGR4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	78	93	+	10.0909	7.4e-05	0.0398	GCAGGCCCACCCTCTG
EGR4	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	68	83	-	10.0909	7.4e-05	0.0398	CCCGCCCCCCGCACAT
HINFP	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	2	13	-	10.5303	7.4e-05	0.109	CCCCCTCCGCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	23	34	+	10.5303	7.4e-05	0.109	GCCGGTCCGCAG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	23	34	+	10.5303	7.4e-05	0.109	GCCGGTCCGCAG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	23	34	+	10.5303	7.4e-05	0.109	GCCGGTCCGCAG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	23	34	+	10.5303	7.4e-05	0.109	GCCGGTCCGCAG
Foxk1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	78	94	-	10.4545	7.41e-05	1	GAGAAATAAACAAGTGG
TBP	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	47	61	+	11.0139	7.41e-05	0.65	TTATAAAGGGCCGCC
TBP	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	54	68	-	11.0139	7.41e-05	0.65	TTATAAAGGGCCGCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	33	44	+	2.25862	7.41e-05	0.298	AGTCACGTGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	33	44	+	2.25862	7.41e-05	0.298	AGTCACGTGCCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	53	64	+	2.25862	7.41e-05	0.298	AGTCACGTGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	53	64	+	2.25862	7.41e-05	0.298	AGTCACGTGCCC
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	23	-	10.7027	7.41e-05	0.188	GGGGGGCGGGGGGCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	47	61	-	10.7027	7.41e-05	0.188	GTGGGGGAGGAGGGA
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	14	25	-	10.3621	7.41e-05	0.365	CCGCCCACCCCA
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	79	90	-	10.3621	7.41e-05	0.365	TGAACCACCGCA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	79	90	-	10.3621	7.41e-05	0.365	TGAACCACCGCA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	79	90	-	10.3621	7.41e-05	0.365	TGAACCACCGCA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	79	90	-	10.3621	7.41e-05	0.365	TGAACCACCGCA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	79	90	-	10.3621	7.41e-05	0.365	TGAACCACCGCA
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	10	21	+	10.3621	7.41e-05	0.365	TCGCCCACCTCA
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	88	99	+	10.3621	7.41e-05	0.365	CCGCCCACCCCA
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	10	23	+	10.5758	7.41e-05	0.0653	GACTCTTCGGCCTA
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	10	23	+	10.5758	7.41e-05	0.0653	GACTCTTCGGCCTA
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	62	75	-	10.5758	7.41e-05	0.0653	CCCTGCCTGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	62	75	-	10.5758	7.41e-05	0.0653	CCCTGCCTGGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	62	75	-	10.5758	7.41e-05	0.0653	CCCTGCCTGGCCTC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	71	85	+	10.2069	7.41e-05	0.016	CGCCCGCCCAGAGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	71	85	+	10.2069	7.41e-05	0.016	CGCCCGCCCAGAGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	93	107	+	10.2069	7.41e-05	0.016	GCCCTGCCCAGCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	11	25	+	6.08621	7.41e-05	0.0417	CCCCCCCCCCGTGTT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	11	25	+	6.08621	7.41e-05	0.0417	CCCCCCCCCCGTGTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	20	34	-	6.08621	7.41e-05	0.0417	CCCAGCCCCCGCCAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	20	34	-	6.08621	7.41e-05	0.0417	CCCAGCCCCCGCCAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	20	34	-	6.08621	7.41e-05	0.0417	CCCAGCCCCCGCCAC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	72	86	+	6.08621	7.41e-05	0.0417	CCCCGCCCCCGGCCA
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	90	104	-	6.08621	7.41e-05	0.0417	CCCCCCCCCCGTGTT
OLIG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	57	-	10.1346	7.41e-05	1	AACAGATGGT
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	57	-	10.1346	7.41e-05	1	AACAGATGGT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	19	32	+	10.0769	7.41e-05	0.0269	GGTCCGCCGCCGGA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	19	32	+	10.0769	7.41e-05	0.0269	GGTCCGCCGCCGGA
EGR1	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	23	36	-	10.0769	7.41e-05	0.0269	GCCCAGCCTCCGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	79	92	+	10.0769	7.41e-05	0.0269	CAGTCGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	79	92	+	10.0769	7.41e-05	0.0269	CAGTCGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	79	92	+	10.0769	7.41e-05	0.0269	CAGTCGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	79	92	+	10.0769	7.41e-05	0.0269	CAGTCGCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	83	96	-	10.0769	7.41e-05	0.0269	GGTCCGCCGCCGGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr5:141704779..141704893,+__662.1.0.0	90	103	-	10.0769	7.41e-05	0.0269	CAGTCGCCGCCGCC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	15	28	+	11	7.41e-05	0.223	ACTTTGTGAGTCAG
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	17	30	+	8.55172	7.41e-05	0.0368	GCCCCCGCCTCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	30	43	+	8.55172	7.41e-05	0.0368	GCCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	30	43	+	8.55172	7.41e-05	0.0368	GCCCCCGCCTCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	33	46	+	8.55172	7.41e-05	0.0368	GGTCCCGCCCCGTG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	33	46	+	8.55172	7.41e-05	0.0368	GGTCCCGCCCCGTG
KLF14	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	36	49	+	8.55172	7.41e-05	0.0368	GGCCCCGCCGCCTG
KLF14	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	37	50	-	8.55172	7.41e-05	0.0368	TGTGACGCCCCCAG
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	65	78	+	8.55172	7.41e-05	0.0368	TGTGACGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	66	79	-	8.55172	7.41e-05	0.0368	GGCCCCGCCGCCTG
NR1H2::RXRA	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	65	81	+	-5.73034	7.41e-05	1	TGAGGGCGAAGGCCATC
HESX1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	-	11.3273	7.41e-05	1	GTTAATTAAT
SP4	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	27	43	-	3.47273	7.41e-05	0.0317	CAAGCGCCTCCCATCTC
SP4	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	50	66	-	3.47273	7.41e-05	0.0317	CAAGCGCCTCCCATCTC
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	61	77	-	3.47273	7.41e-05	0.0317	GAGGCACCGCCCATGGC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	34	47	+	6.06383	7.41e-05	0.102	CCCCGCCCGCAGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	34	47	+	6.06383	7.41e-05	0.102	CCCCGCCCGCAGGG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr5:162864260..162864374,-__670.1.0.0	24	37	-	6.06383	7.41e-05	0.102	GGCCCCCTACTGAA
ZIC1	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	33	46	-	6.06383	7.41e-05	0.102	TGACCCCCGTCGCT
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	58	71	+	6.06383	7.41e-05	0.102	TGCCCCCTGGTGGC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	58	71	+	6.06383	7.41e-05	0.102	TGCCCCCTGGTGGC
ZIC1	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	69	82	+	6.06383	7.41e-05	0.102	TGACCCCCGTCGCT
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr5:162864293..162864407,-__671.1.0.0	57	70	-	6.06383	7.41e-05	0.102	GGCCCCCTACTGAA
ATF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	46	58	-	9.52459	7.41e-05	0.657	GCATTATGCAATG
ATF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	46	58	-	9.52459	7.41e-05	0.657	GCATTATGCAATG
HOXA2	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	83	92	+	10.3019	7.41e-05	1	CCCCATTACC
NR2F1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	49	61	+	11.102	7.42e-05	0.505	CAGGGGTCAGCAC
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	6	25	-	3.41284	7.42e-05	0.0675	CCCACCCCCACCAAGCACAC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	9	29	-	9.44898	7.42e-05	0.0207	AGGGAGGGAGGGAGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	13	33	-	9.44898	7.42e-05	0.0207	AGGGAGGGAGGGAGGGAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	17	37	-	9.44898	7.42e-05	0.0207	AGGGAGGGAGGGAGGGAGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	52	72	-	9.44898	7.42e-05	0.0207	CGGGGTGGGGAGGACGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	80	100	+	9.44898	7.42e-05	0.0207	AGAGCCAGAGCAGGATGGAGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	81	101	+	9.44898	7.42e-05	0.0207	GGAGACACAGAAGATGGAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	81	101	+	9.44898	7.42e-05	0.0207	GGAGACACAGAAGATGGAGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	100	+	11.551	7.42e-05	0.183	GGCAGCTGCGGGA
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	19	31	+	10.102	7.42e-05	0.317	GAAGTGATGCCAG
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	75	87	-	10.102	7.42e-05	0.317	GAAGTGATGCCAG
Tcf7	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	64	75	+	9.03226	7.42e-05	1	TAACATAAAAGC
ETV2	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	13	23	+	10.2459	7.42e-05	0.183	GACCGGAAGGT
ETV2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	76	-	10.2459	7.42e-05	0.183	GACAGGAAGTC
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	15	25	+	9.32759	7.42e-05	0.0858	ACACCCACACG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	15	25	+	9.32759	7.42e-05	0.0858	ACACCCACACG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	46	56	-	9.32759	7.42e-05	0.0858	ACACCCACACG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	46	56	-	9.32759	7.42e-05	0.0858	ACACCCACACG
EGR2	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	79	89	+	9.32759	7.42e-05	0.0858	ACACCCACACG
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	90	100	-	10.8485	7.42e-05	1	TTATGTAGCAA
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	90	100	-	10.8485	7.42e-05	1	TTATGTAGCAA
NFIL3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	90	100	-	10.8485	7.42e-05	1	TTATGTAGCAA
NFIL3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	90	100	-	10.8485	7.42e-05	1	TTATGTAGCAA
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	17	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	17	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	26	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	28	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	33	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	54	-	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	53	63	-	11.1636	7.42e-05	0.068	GTACTTCCTGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	15	25	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	29	39	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	52	62	+	11.1636	7.42e-05	0.068	GTACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	61	71	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	61	71	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	65	75	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	82	92	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
ELK4	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	98	108	+	11.1636	7.42e-05	0.068	TCATTTCCTGT
NFKB2	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	28	40	+	7.95455	7.42e-05	0.264	TGGGGCCACCCCT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	41	53	-	7.95455	7.42e-05	0.264	CGGGGCATCCCTC
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	86	98	+	7.95455	7.42e-05	0.264	CGGGGCATCCCTC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	86	98	+	7.95455	7.42e-05	0.264	CGGGGCATCCCTC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	86	98	+	7.95455	7.42e-05	0.264	CGGGGCATCCCTC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	86	98	+	7.95455	7.42e-05	0.264	CGGGGCATCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	24	34	+	10.3103	7.42e-05	0.0236	GCCCCACCCGC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	24	34	+	10.3103	7.42e-05	0.0236	GCCCCACCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	24	34	+	10.3103	7.42e-05	0.0236	GCCCCACCCGC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	24	34	+	10.3103	7.42e-05	0.0236	GCCCCACCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	26	36	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	26	36	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	26	36	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	26	36	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	38	48	-	10.3103	7.42e-05	0.0236	GCCCCACCCGC
KLF16	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	39	49	-	10.3103	7.42e-05	0.0236	TCCCAGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	53	63	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	53	63	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	53	63	-	10.3103	7.42e-05	0.0236	GCCCCGACCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	66	76	+	10.3103	7.42e-05	0.0236	TCCCAGCCCCC
RELA	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	100	109	+	9.52041	7.42e-05	0.241	CGGGTTTCCC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	100	111	-	10.7	7.42e-05	0.217	GGCATCCACCGC
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	100	111	-	10.7	7.42e-05	0.217	GGCATCCACCGC
TEAD4	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	34	43	-	11.2097	7.42e-05	0.799	CGCATTCCGG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	89	99	-	11.4	7.42e-05	0.721	CACCACTCATG
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	86	98	-	1.81633	7.42e-05	0.253	GAGGGATGCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	86	98	-	1.81633	7.42e-05	0.253	GAGGGATGCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	86	98	-	1.81633	7.42e-05	0.253	GAGGGATGCCCCG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	86	98	-	1.81633	7.42e-05	0.253	GAGGGATGCCCCG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	17	29	+	1.81633	7.42e-05	0.253	GGGTGGTTTCCCA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	41	53	+	1.81633	7.42e-05	0.253	GAGGGATGCCCCG
NFKB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	48	60	+	1.81633	7.42e-05	0.253	GGGTGGTTTCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	48	60	+	1.81633	7.42e-05	0.253	GGGTGGTTTCCCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	20	32	+	9.63793	7.42e-05	0.0554	TCCCCGGCCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	8	20	-	9.63793	7.42e-05	0.0554	CCCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	8	20	-	9.63793	7.42e-05	0.0554	CCCCCTGGCGGCC
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	24	36	+	9.63793	7.42e-05	0.0554	CGCCGCCGCGGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	36	48	+	9.63793	7.42e-05	0.0554	CCCCCCGGCGGCC
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	48	60	-	9.63793	7.42e-05	0.0554	AGCCTGGGAGGGA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	79	91	-	9.63793	7.42e-05	0.0554	CGCCGCCGCGGCA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	98	110	+	9.63793	7.42e-05	0.0554	AGCCTGGGAGGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	1	11	-	10.6552	7.42e-05	0.0506	GAGCGCGAAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	1	11	-	10.6552	7.42e-05	0.0506	GAGCGCGAAGA
E2F4	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	44	54	+	10.6552	7.42e-05	0.0506	GGGCGGCAGGA
E2F4	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	40	50	-	10.6552	7.42e-05	0.0506	CCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	65	75	+	10.6552	7.42e-05	0.0506	CCGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	65	75	+	10.6552	7.42e-05	0.0506	CCGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	65	75	+	10.6552	7.42e-05	0.0506	CCGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	65	75	+	10.6552	7.42e-05	0.0506	CCGCGGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	42	59	+	-15.0658	7.42e-05	0.0538	GGAGGAGGAGCAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	42	59	+	-15.0658	7.42e-05	0.0538	GGAGGAGGAGCAGGGAGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	69	86	+	-15.0658	7.42e-05	0.0538	GGAGGAGGAGCAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	17	34	-	-15.0658	7.42e-05	0.0538	GAAATGAGGCAATGAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	17	34	-	-15.0658	7.42e-05	0.0538	GAAATGAGGCAATGAGAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	29	46	-	-15.0658	7.42e-05	0.0538	GGAGGAGGAGCAGGGAGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	56	73	-	-15.0658	7.42e-05	0.0538	GGAGGAGGAGCAGGGAGG
GLIS1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	48	63	+	-9.88462	7.42e-05	0.329	TTAGCCCCCAAGTCGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	+	10.1148	7.43e-05	0.0589	CCCCCTGGCGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	+	10.1148	7.43e-05	0.0589	CCCCCTGGCGGGA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	45	57	+	10.1148	7.43e-05	0.0589	GGCCGGGCGGGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	+	10.1148	7.43e-05	0.0589	AGCCCGCGCGGCC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	58	70	-	10.1148	7.43e-05	0.0589	GGCCGGGCGGGCG
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	37	47	+	10.6212	7.43e-05	0.0521	CAGCCCACCCA
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	7	21	-	8.03279	7.43e-05	0.0705	GAACACTCCCTCCCT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	7	21	-	8.03279	7.43e-05	0.0705	GAACACTCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	7	21	-	8.03279	7.43e-05	0.0705	GAACACTCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	26	40	+	8.03279	7.43e-05	0.0705	GAACACTCCCTCCCT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	26	40	+	8.03279	7.43e-05	0.0705	GAACACTCCCTCCCT
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	26	40	+	8.03279	7.43e-05	0.0705	CGCCCCGCCCTCGGC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	91	105	+	8.03279	7.43e-05	0.0705	GATCCCGCCCTCCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	91	105	+	8.03279	7.43e-05	0.0705	GATCCCGCCCTCCAG
SP8	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	13	24	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	29	40	-	10.6711	7.43e-05	0.0347	ACCACCCCCTCC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	43	54	+	10.6711	7.43e-05	0.0347	ACAACACCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	43	54	+	10.6711	7.43e-05	0.0347	ACAACACCCACA
SP8	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	75	86	+	10.6711	7.43e-05	0.0347	ACCACCCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	64	75	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	64	75	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	70	81	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	70	81	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	70	81	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	70	81	-	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	70	81	-	10.6711	7.43e-05	0.0347	ACAACACCCACA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	70	81	-	10.6711	7.43e-05	0.0347	ACAACACCCACA
SP8	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	91	102	+	10.6711	7.43e-05	0.0347	ACACCGCCCCTC
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	90	106	+	11.0395	7.43e-05	1	ACTGAGCTGTACAAAGA
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	90	106	+	11.0395	7.43e-05	1	ACTGAGCTGTACAAAGA
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	90	106	+	11.0395	7.43e-05	1	ACTGAGCTGTACAAAGA
Rhox11	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	90	106	+	11.0395	7.43e-05	1	ACTGAGCTGTACAAAGA
Rarg	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	52	67	+	-2.63265	7.43e-05	0.877	GCGGTCAGGAGGGCGG
Rarg	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	48	63	-	-2.63265	7.43e-05	0.877	GCGGTCAGGAGGGCGG
GLIS2	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	26	39	+	7.93443	7.43e-05	0.185	CGCCCCCCACCCCG
GLIS2	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	76	89	-	7.93443	7.43e-05	0.185	CGCCCCCCACCCCG
CLOCK	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	-	11.1818	7.43e-05	0.585	ACCACGTGGA
CLOCK	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	+	11.1818	7.43e-05	0.585	ACCACGTGGA
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	-	11.1818	7.43e-05	0.585	ACCACGTGGA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	40	50	+	11.2245	7.43e-05	0.392	GCTTCCCGGAG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	40	50	+	11.2245	7.43e-05	0.392	GCTTCCCGGAG
Gabpa	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	28	38	+	10.7049	7.43e-05	0.071	GAGGAAGTGGT
Gabpa	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	47	57	-	10.7049	7.43e-05	0.071	GAGGAAGTGGT
Gabpa	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	77	87	-	10.7049	7.43e-05	0.071	GAGGAAGTGGT
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	64	75	-	9.59184	7.43e-05	0.189	TGGCTGCGGCCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	64	75	-	9.59184	7.43e-05	0.189	TGGCTGCGGCCG
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	64	75	-	9.59184	7.43e-05	0.189	TGGCTGCGGCCG
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	64	75	-	9.59184	7.43e-05	0.189	TGGCTGCGGCCG
INSM1	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	3	14	+	9.59184	7.43e-05	0.189	TGGCTGCGGCCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	29	41	+	9.7541	7.43e-05	0.0644	TCCCTCCCAGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	29	41	+	9.7541	7.43e-05	0.0644	TCCCTCCCAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	65	77	+	9.7541	7.43e-05	0.0644	CCCCCTCTGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	65	77	+	9.7541	7.43e-05	0.0644	CCCCCTCTGGGGA
GSX2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	65	+	9.56604	7.43e-05	1	GGCAATTAAA
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	14	22	+	10.898	7.43e-05	1	TATGGTAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	55	63	-	10.898	7.43e-05	1	TATGGTAAT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	93	106	-	8.88525	7.43e-05	0.365	AAACCCGTGGGAAA
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	55	68	-	9.91379	7.43e-05	0.292	GTTTCTGTGGAAAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	55	68	-	9.91379	7.43e-05	0.292	GTTTCTGTGGAAAC
Rfx1	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	101	114	-	9.91379	7.43e-05	0.292	GACGCCCCGGCGAC
HNF1A	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	81	95	+	10.0649	7.43e-05	1	CATTACTTTTTAACT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	7	18	+	8.76364	7.43e-05	0.127	AGACAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	7	18	+	8.76364	7.43e-05	0.127	AGACAGGAAGTG
ELF1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	46	57	+	8.76364	7.43e-05	0.127	GAAGCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	94	105	-	8.76364	7.43e-05	0.127	CACCCGGAAAAG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	94	105	-	8.76364	7.43e-05	0.127	CACCCGGAAAAG
Hmx3	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	53	69	+	10.6585	7.43e-05	1	TCTGGCAATTAAAGACC
HEY1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	11	20	+	11.4	7.43e-05	0.173	GACACGCGAC
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	37	46	-	11.4	7.43e-05	0.173	GACACGCGAC
HEY1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	95	104	-	11.4	7.43e-05	0.173	GACACGCGAC
HEY1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	95	104	-	11.4	7.43e-05	0.173	GACACGCGAC
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	25	41	-	-5.74157	7.43e-05	1	AGCGGTCAAAGCTTATT
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	25	41	-	-5.74157	7.43e-05	1	AGCGGTCAAAGCTTATT
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	18	31	+	6.04878	7.43e-05	0.5	TCCGCGCCCGGCGC
MTF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	18	31	+	6.04878	7.43e-05	0.5	TCCGCGCCCGGCGC
MTF1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	84	97	-	6.04878	7.43e-05	0.5	TCCGCGCCCGGCGC
NFATC1	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	6	15	+	10.4634	7.44e-05	0.956	TCTTTCCACT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	11	21	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	11	21	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	31	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	31	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	31	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	31	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	24	34	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	29	39	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	44	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	66	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	65	75	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	65	75	+	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	79	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	79	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	79	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	79	+	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	36	46	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	37	47	-	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	40	50	-	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	40	50	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	49	59	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	51	61	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	51	61	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	51	61	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	54	64	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	54	64	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	54	64	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	54	64	-	10.8862	7.44e-05	0.0247	CCCCCTCCCTC
SP3	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	81	91	-	10.8862	7.44e-05	0.0247	CCCCCTCCCCG
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	46	56	-	10.8571	7.44e-05	0.227	CGCTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	46	56	-	10.8571	7.44e-05	0.227	CGCTGACTCAC
CTCF	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	12	30	-	8.47541	7.44e-05	0.127	TGGCCCGAAGTTGGCGGCT
CTCF	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	30	48	+	8.47541	7.44e-05	0.127	CTGTCTGTAGGTGTCACTT
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	41	-	10.2041	7.44e-05	0.343	CTCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	41	-	10.2041	7.44e-05	0.343	CTCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	41	-	10.2041	7.44e-05	0.343	CTCCACGTGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	41	-	10.2041	7.44e-05	0.343	CTCCACGTGGC
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	41	-	10.2041	7.44e-05	0.343	CTCCACGTGGC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	11.1636	7.44e-05	0.123	ACCGGAACTA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	11.1636	7.44e-05	0.123	ACCGGAACTA
ELF3	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	17	29	-	8.01724	7.44e-05	0.174	TTCCCGGAAGGGC
ELF3	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	86	98	+	8.01724	7.44e-05	0.174	TTCCCGGAAGGGC
Creb5	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	80	91	+	8.47273	7.44e-05	0.244	GATGACGTAAAG
Creb5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	24	35	-	8.47273	7.44e-05	0.244	GATGACGTAAAG
Creb5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	24	35	-	8.47273	7.44e-05	0.244	GATGACGTAAAG
IRF2	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	18	35	+	4.77982	7.44e-05	0.626	GGAAAGGGAAGCTGTTAA
TEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	8	19	+	10.4545	7.44e-05	1	GGTGACGTAACC
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	8	19	+	10.4545	7.44e-05	1	GGTGACGTAACC
TEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	8	19	+	10.4545	7.44e-05	1	GGTGACGTAACC
TEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	8	19	+	10.4545	7.44e-05	1	GGTGACGTAACC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	7	16	+	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	41	50	+	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	58	+	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	58	+	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	56	65	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	56	65	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	64	73	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	64	73	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	64	73	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	71	80	-	9.82759	7.44e-05	0.249	CTCAGGTGAC
LEF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	72	86	-	8.43548	7.44e-05	1	AAAGAATAAAGGGAA
LEF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	72	86	-	8.43548	7.44e-05	1	AAAGAATAAAGGGAA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	38	52	-	9.36364	7.44e-05	0.334	GTGGTTTCTGGTCCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	38	52	-	9.36364	7.44e-05	0.334	GTGGTTTCTGGTCCC
ZBTB33	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	63	77	-	10.0909	7.44e-05	0.12	CTCCCGTGATGCCGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	98	112	-	10.0909	7.44e-05	0.12	CTCCCGTGATGCCGC
ZBTB33	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	3	17	+	10.0909	7.44e-05	0.12	CTCCCGTGATGCCGC
ZBTB33	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	38	52	+	10.0909	7.44e-05	0.12	CTCCCGTGATGCCGC
SREBF2	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	24	33	-	11.0337	7.44e-05	0.871	CTGGTCTGAC
TP53	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	72	89	+	6.26531	7.44e-05	0.979	TACAAGCTCTCGCCTGCC
TP53	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	72	89	+	6.26531	7.44e-05	0.979	TACAAGCTCTCGCCTGCC
TP53	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	67	84	-	6.26531	7.44e-05	0.979	AACTTGAAAAAACATGTT
TP53	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	67	84	-	6.26531	7.44e-05	0.979	AACTTGAAAAAACATGTT
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	59	70	-	10.3448	7.44e-05	0.365	GAAACCACCAAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	59	70	-	10.3448	7.44e-05	0.365	GAAACCACCAAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	66	77	-	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	66	77	-	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	67	78	-	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	67	78	-	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	37	48	+	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	38	49	+	10.3448	7.44e-05	0.365	AGGCCCACCGGA
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	83	94	+	10.3448	7.44e-05	0.365	GAAACCACCAAC
GLIS3	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	30	43	-	3.43939	7.44e-05	0.379	CACCCCCCATACGG
GLIS3	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	72	85	+	3.43939	7.44e-05	0.379	CACCCCCCATACGG
DUX4	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	96	106	+	10.5106	7.45e-05	1	TGATGCAATCA
Myog	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	104	+	11.5918	7.45e-05	0.173	CACAGCTGTGC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	98	108	+	11.5918	7.45e-05	0.173	GACAGGTGAAG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	98	108	+	11.5918	7.45e-05	0.173	GACAGGTGAAG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	98	108	+	11.5918	7.45e-05	0.173	GACAGGTGAAG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	98	108	+	11.5918	7.45e-05	0.173	GACAGGTGAAG
Myog	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	93	103	-	11.5918	7.45e-05	0.173	CACAGCTGTGC
Hes1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	60	69	+	9.8951	7.45e-05	0.12	GCCACGCGGA
Hes1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	60	69	+	9.8951	7.45e-05	0.12	GCCACGCGGA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	51	62	+	10.0492	7.45e-05	0.136	GCTCCGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	51	62	+	10.0492	7.45e-05	0.136	GCTCCGGAAGTG
ELK4	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	33	43	-	11.1455	7.45e-05	0.0681	GAGCTTCCGCC
ELK4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	45	55	-	11.1455	7.45e-05	0.0681	GCTCTTCCGCC
ELK4	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	72	82	+	11.1455	7.45e-05	0.0681	GAGCTTCCGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	17	27	+	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	17	27	+	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	24	34	+	10.8545	7.45e-05	0.0714	CGCCGGAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	24	34	+	10.8545	7.45e-05	0.0714	CGCCGGAGGGA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	59	69	+	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	70	80	-	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	70	80	-	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	88	98	-	10.8545	7.45e-05	0.0714	GGCCCGCGGCA
RXRG	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	50	63	+	1.38298	7.45e-05	0.48	GGGGTCAGAAGGCA
ERF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	10.8714	7.45e-05	0.113	ACCGGAAAGA
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	10.8714	7.45e-05	0.113	ACCGGAAAGA
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	10.8714	7.45e-05	0.113	ACCGGAAAGA
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	10.8714	7.45e-05	0.113	ACCGGAAAGA
ERF	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	10.8714	7.45e-05	0.113	ACCGGAAAGA
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	103	113	-	10.878	7.45e-05	0.0247	CCAACGCCTCC
GBX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.234	7.45e-05	1	ACTAATTAGA
SP4	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	21	37	+	3.45455	7.45e-05	0.0318	GCCGTCCCGCCCACCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	48	64	+	3.45455	7.45e-05	0.0318	GCCGTCCCGCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	79	89	-	10.6061	7.45e-05	0.0522	AACAACACCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	79	89	-	10.6061	7.45e-05	0.0522	AACAACACCCT
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.1	50	60	-	10.6735	7.45e-05	0.531	TCTGCGGGTTC
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:30968541..30968655,+__1506.1.2.0	50	60	-	10.6735	7.45e-05	0.531	TCTGCGGGTTC
IRF7	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	22	35	+	8.41935	7.45e-05	0.731	AGGAAACCGGAAGT
IRF7	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	80	93	-	8.41935	7.45e-05	0.731	AGGAAACCGGAAGT
Foxk1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.1	64	80	+	10.4416	7.45e-05	1	GCAAGGTATACAATGCC
Foxk1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.0.0	64	80	+	10.4416	7.45e-05	1	GCAAGGTATACAATGCC
Foxk1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.1.0	64	80	+	10.4416	7.45e-05	1	GCAAGGTATACAATGCC
Foxk1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:57753082..57753196,-__1326.1.2.0	64	80	+	10.4416	7.45e-05	1	GCAAGGTATACAATGCC
EGR3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	32	46	+	6.06897	7.45e-05	0.0417	CCACACCTCCACACT
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	48	62	+	6.06897	7.45e-05	0.0417	CCCCGCCCCCGGGGT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	48	62	+	6.06897	7.45e-05	0.0417	CCCCGCCCCCGGGGT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	48	62	+	6.06897	7.45e-05	0.0417	CCCCGCCCCCGGGGT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	48	62	+	6.06897	7.45e-05	0.0417	CCCCGCCCCCGGGGT
EGR3	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	57	71	+	6.06897	7.45e-05	0.0417	CCGCGCCCCCACGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	44	58	-	6.06897	7.45e-05	0.0417	CCGCGCCCCCACGTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	44	58	-	6.06897	7.45e-05	0.0417	CCGCGCCCCCACGTC
EGR3	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	65	79	+	6.06897	7.45e-05	0.0417	GGCCGCCGCCGCCTC
EGR3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	69	83	-	6.06897	7.45e-05	0.0417	CCACACCTCCACACT
EGR3	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	90	104	+	6.06897	7.45e-05	0.0417	GGCCGCCGCCGCCTC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	70	-	10.8143	7.45e-05	0.244	AACAGCTGAT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	70	-	10.8143	7.45e-05	0.244	AACAGCTGAT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	88	97	-	10.8143	7.45e-05	0.244	GGCAGCTGGC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	88	97	-	10.8143	7.45e-05	0.244	GGCAGCTGGC
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	26	35	+	10.8143	7.45e-05	0.244	GGCAGCTGGC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	26	35	+	10.8143	7.45e-05	0.244	GGCAGCTGGC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	-	11.4091	7.45e-05	0.297	CGCACGTGAT
MLXIPL	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	+	11.4091	7.45e-05	0.297	CGCACGTGAT
TBX1	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	12	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	34	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	34	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	34	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	34	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	34	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	41	48	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	42	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	73	80	+	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	74	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	88	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	103	110	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	113	-	11.1837	7.45e-05	0.756	AGGTGCGA
YY1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	3	14	-	10.4038	7.45e-05	0.317	CAACATGGAGAA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	66	76	-	11.2692	7.45e-05	0.401	CTGATGAGTCA
JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	15	27	+	10.0816	7.45e-05	0.317	TTTCTGACGTCAT
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	15	27	+	10.0816	7.45e-05	0.317	TTTCTGACGTCAT
JUN	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	102	114	+	10.0816	7.45e-05	0.317	GTGGTGAGGTAAG
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	7	17	+	11.1636	7.46e-05	0.0551	TCCCCCCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	19	29	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	19	29	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	19	29	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	19	29	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	19	29	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	31	41	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	35	45	+	11.1636	7.46e-05	0.0551	TCCCCCCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	38	48	+	11.1636	7.46e-05	0.0551	TCCCCCCGGCG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	40	50	-	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	60	70	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	60	70	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	60	70	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	60	70	+	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	+	11.1636	7.46e-05	0.0551	ACCCTCGGGCT
TFAP2A	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	74	84	-	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	86	96	-	11.1636	7.46e-05	0.0551	GGCCTGCGGCG
TFAP2A	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	98	108	-	11.1636	7.46e-05	0.0551	TCCCCCCGGCG
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	89	98	+	10.0244	7.46e-05	0.569	GACACCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	89	98	+	10.0244	7.46e-05	0.569	GACACCTGTG
SPDEF	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	38	48	+	10.0364	7.46e-05	0.269	AGCCGGACGTG
SPDEF	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	62	72	+	10.0364	7.46e-05	0.269	AGCCGGACGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	43	53	-	10.0364	7.46e-05	0.269	AGCCGGACGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	59	69	-	10.0364	7.46e-05	0.269	GACCGGAAGTA
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	59	69	-	10.0364	7.46e-05	0.269	GACCGGAAGTA
SPDEF	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	67	77	-	10.0364	7.46e-05	0.269	AGCCGGACGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	79	89	-	10.0364	7.46e-05	0.269	GACCGGAAGTA
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	79	89	-	10.0364	7.46e-05	0.269	GACCGGAAGTA
NR2C2	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	8	22	-	9.14286	7.46e-05	0.122	TGATGTCAGAGAGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	27	41	+	9.14286	7.46e-05	0.122	AGGGGGAAGGGGCCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	29	43	+	9.14286	7.46e-05	0.122	AGGGGGAAGGGGCCG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	26	40	-	9.14286	7.46e-05	0.122	GGAGGGAGGGGGGCA
NR2C2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	42	56	+	9.14286	7.46e-05	0.122	TGATGTCAGAGAGCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	59	73	-	9.14286	7.46e-05	0.122	TGATGTCAGAGAGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	73	87	-	9.14286	7.46e-05	0.122	GGAGTTCTGAGGCCA
NR2C2	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	93	107	+	9.14286	7.46e-05	0.122	TGATGTCAGAGAGCG
RXRA::VDR	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	70	84	-	5.69725	7.46e-05	1	GGGACACAGGGGTCA
RXRA::VDR	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	70	84	-	5.69725	7.46e-05	1	GGGACACAGGGGTCA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	12	29	-	-15.0921	7.46e-05	0.0539	GGGGGGAGGGGCGGCTAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	12	29	-	-15.0921	7.46e-05	0.0539	GGGGGGAGGGGCGGCTAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	12	29	-	-15.0921	7.46e-05	0.0539	GGGGGGAGGGGCGGCTAG
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	+	10.6364	7.46e-05	0.655	CACAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	+	10.6364	7.46e-05	0.655	CACAGCTGCT
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	-	10.6364	7.46e-05	0.655	CACAGCTGCT
RREB1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	2	21	-	3.3945	7.46e-05	0.0677	CCACCCCACTGCCCAACCGC
RREB1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	65	84	+	3.3945	7.46e-05	0.0677	CCCCCAAACCTCAGCACTGC
HES7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	9	20	+	3	7.46e-05	0.2	CGGCACCTGGCG
HES7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	9	20	+	3	7.46e-05	0.2	CGGCACCTGGCG
HES7	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	9	20	+	3	7.46e-05	0.2	CGGCACCTGGCG
HES7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	9	20	+	3	7.46e-05	0.2	CGGCACCTGGCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	61	72	+	3	7.46e-05	0.2	AGCCACGTGACT
Bcl6	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	85	98	-	10.5968	7.46e-05	0.471	CTTGCTGGAGGGCT
Stat4	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	64	77	+	11.1034	7.46e-05	0.342	ATGCTGGGAAATCC
Stat4	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	70	83	-	11.1034	7.46e-05	0.342	ATGCTGGGAAATCC
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	7	16	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	7	16	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	7	16	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	7	16	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	54	63	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	63	72	+	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	83	92	+	11.5	7.46e-05	0.659	CCTTTCTTTC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	83	92	+	11.5	7.46e-05	0.659	CCTTTCTTTC
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	83	92	+	11.5	7.46e-05	0.659	CCTTTCTTTC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	83	92	+	11.5	7.46e-05	0.659	CCTTTCTTTC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	83	92	+	11.5	7.46e-05	0.659	CCTTTCTTTC
Sox3	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	2	11	-	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	43	52	-	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	43	52	-	11.5	7.46e-05	0.659	GTTTTGTTTT
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	95	104	-	11.5	7.46e-05	0.659	CTTTTGTGTC
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.1.0	95	104	-	11.5	7.46e-05	0.659	CTTTTGTGTC
Sox3	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	99	108	-	11.5	7.46e-05	0.659	GTTTTGTTTT
Nr1h3::Rxra	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	10	28	+	10.4516	7.46e-05	0.674	TGGCTGGCGATGACCTCAT
MAX	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	11.8654	7.46e-05	0.298	GACACGTGAC
MAX	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	11.8654	7.46e-05	0.298	GACACGTGAC
MAX	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	11.8654	7.46e-05	0.298	GACACGTGAC
MAX	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	11.8654	7.46e-05	0.298	GACACGTGAC
MAX	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	11.8654	7.46e-05	0.298	GACACGTGAC
MAX	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	11.8654	7.46e-05	0.298	GACACGTGAC
ZIC4	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	4	18	-	10.1636	7.46e-05	0.109	GGCCGCCCGCGTGGC
ZIC4	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	19	33	-	10.1636	7.46e-05	0.109	GCCCACCCTCTGCGG
ZIC4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	59	73	-	10.1636	7.46e-05	0.109	GCGCCCCCGCCGATC
ZIC4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	65	79	-	10.1636	7.46e-05	0.109	CGCCCCCAGCCGAGC
ZIC4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	50	+	10.1636	7.46e-05	0.109	CGCCCCCAGCCGAGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	42	56	+	10.1636	7.46e-05	0.109	GCGCCCCCGCCGATC
ZIC4	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	82	96	+	10.1636	7.46e-05	0.109	GCCCACCCTCTGCGG
ZIC4	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	97	111	+	10.1636	7.46e-05	0.109	GGCCGCCCGCGTGGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	7	18	-	10.5152	7.46e-05	0.109	CGGCTTCCGCGA
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	66	+	10.5152	7.46e-05	0.109	GCACGTGCGCGT
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	66	+	10.5152	7.46e-05	0.109	GCACGTGCGCGT
SP2	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	12	26	-	10.1897	7.46e-05	0.0161	TCCCCTCCCCAGTTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	28	42	+	10.1897	7.46e-05	0.0161	CCACCTCCCCCGACC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	28	42	+	10.1897	7.46e-05	0.0161	CCACCTCCCCCGACC
SP2	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	47	61	+	10.1897	7.46e-05	0.0161	ACCCCTCCCCTGTTT
SP2	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	33	47	-	10.1897	7.46e-05	0.0161	GCTCCGCCTTTCGTA
SP2	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	49	63	+	10.1897	7.46e-05	0.0161	TCCCCGCTCCGCCCG
SP2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	55	69	+	10.1897	7.46e-05	0.0161	TCTCCGCCCCGCACA
SP2	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	52	66	-	10.1897	7.46e-05	0.0161	TCCCCGCTCCGCCCG
SP2	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	68	82	+	10.1897	7.46e-05	0.0161	GCTCCGCCTTTCGTA
SP2	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	63	77	-	10.1897	7.46e-05	0.0161	CCCCCACCCTTCGAG
PAX5	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	70	88	+	10.3548	7.46e-05	0.15	GAGGGCAGCCAGCTCTGCC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	106	+	11.5102	7.46e-05	0.192	AGCAGCTGTGT
ZIC1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	6	19	+	6.04255	7.46e-05	0.102	CGCACCCCGGCGCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	96	109	-	6.04255	7.46e-05	0.102	CGCACCCCGGCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	7	20	+	8.53448	7.46e-05	0.0369	GCCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	7	20	+	8.53448	7.46e-05	0.0369	GCCCCCGCCCCTGC
KLF14	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	15	28	-	8.53448	7.46e-05	0.0369	GCCCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	29	42	-	8.53448	7.46e-05	0.0369	ATACCCGCCCATTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	29	42	-	8.53448	7.46e-05	0.0369	ATACCCGCCCATTT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	87	100	+	8.53448	7.46e-05	0.0369	GCCCCCGCCCCTGC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	87	100	+	8.53448	7.46e-05	0.0369	GCCCCCGCCCCTGC
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	57	71	+	10.1818	7.46e-05	0.332	TGAAATTGAAAATAA
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	17	29	+	7.93939	7.46e-05	0.264	GGGTGGTTTCCCA
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	48	60	+	7.93939	7.46e-05	0.264	GGGTGGTTTCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	48	60	+	7.93939	7.46e-05	0.264	GGGTGGTTTCCCA
PROX1	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	35	46	+	8.49091	7.47e-05	1	CACGACGCCGCA
SP1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	2	12	+	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
SP1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	3	13	+	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
SP1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	5	15	+	10.6923	7.47e-05	0.0181	TCCCCACCTAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	2	12	-	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	2	12	-	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	14	24	+	10.6923	7.47e-05	0.0181	TTCCCTCCCTT
SP1	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	14	24	-	10.6923	7.47e-05	0.0181	ACTCCTCCCCG
SP1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	24	34	-	10.6923	7.47e-05	0.0181	TTCCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	40	50	+	10.6923	7.47e-05	0.0181	TTCCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	40	50	+	10.6923	7.47e-05	0.0181	TTCCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	32	42	-	10.6923	7.47e-05	0.0181	ACTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	32	42	-	10.6923	7.47e-05	0.0181	ACTCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	32	42	-	10.6923	7.47e-05	0.0181	ACTCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	45	55	+	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	45	55	+	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	37	47	-	10.6923	7.47e-05	0.0181	ACTCCTCCCCG
SP1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	60	70	+	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	73	83	+	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	73	83	+	10.6923	7.47e-05	0.0181	TCCCCTCCTTT
SP1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	81	91	+	10.6923	7.47e-05	0.0181	TTCCCTCCCTT
SP1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	91	101	-	10.6923	7.47e-05	0.0181	TTCCCTCCCTT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	102	112	-	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	102	112	-	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	102	112	-	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	102	112	-	10.6923	7.47e-05	0.0181	CTCCCGCCTCA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	22	31	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	22	31	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	22	31	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	22	-	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	31	40	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	76	85	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	76	85	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	93	102	+	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	99	108	-	10.0213	7.47e-05	0.101	CCCGGAAGCC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	99	108	-	10.0213	7.47e-05	0.101	CCCGGAAGCC
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	14	24	-	11.1633	7.47e-05	0.155	CCCACGTGAGC
USF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	14	24	-	11.1633	7.47e-05	0.155	CCCACGTGAGC
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	94	104	-	11.1633	7.47e-05	0.155	CCCACGTGAGC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	6	18	-	9.62069	7.47e-05	0.0554	CGCCCTAACGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	24	-	9.62069	7.47e-05	0.0554	CCCCCCCGCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	69	+	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	69	+	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	69	+	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	69	+	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	69	+	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	58	-	9.62069	7.47e-05	0.0554	TCCCGCCCAGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	68	80	-	9.62069	7.47e-05	0.0554	TGCCTGCCAGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	68	80	-	9.62069	7.47e-05	0.0554	TGCCTGCCAGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	68	80	-	9.62069	7.47e-05	0.0554	TGCCTGCCAGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	97	109	+	9.62069	7.47e-05	0.0554	CGCCCTAACGGCC
Klf12	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	24	38	-	8.01639	7.47e-05	0.0705	TGCCCCACCCCCACC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	30	44	-	8.01639	7.47e-05	0.0705	AAACACGCCCCCGCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	55	69	+	8.01639	7.47e-05	0.0705	AAACACGCCCCCGCC
Klf12	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	77	91	+	8.01639	7.47e-05	0.0705	TGCCCCACCCCCACC
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	70	80	+	11.0303	7.47e-05	0.389	GTCCCCCATCA
GLIS2	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	6	19	+	7.91803	7.47e-05	0.185	TCCCCCCGGCAACG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	13	26	-	7.91803	7.47e-05	0.185	TCCCCCCGGCAACG
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	13	26	-	7.91803	7.47e-05	0.185	TCCCCCCGGCAACG
GLIS2	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	89	102	+	7.91803	7.47e-05	0.185	TCCCCCCGGCAACG
GLIS2	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	96	109	-	7.91803	7.47e-05	0.185	TCCCCCCGGCAACG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	30	40	+	10.8793	7.47e-05	0.0747	TGGTGGGAAAG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	30	40	+	10.8793	7.47e-05	0.0747	TGGTGGGAAAG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	55	65	+	10.8793	7.47e-05	0.0747	TGGTGGGAAAG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	+	11.0727	7.47e-05	0.0924	AGCCGCCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	55	66	-	11.0727	7.47e-05	0.0924	GGGCCCAGGGCA
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	79	-	8.85246	7.47e-05	0.115	ATACCGGAAGGC
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	79	-	8.85246	7.47e-05	0.115	ATACCGGAAGGC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	79	-	8.85246	7.47e-05	0.115	ATACCGGAAGGC
MLX	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	+	9.87143	7.47e-05	0.321	GTCACGTGTA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	61	71	-	9.78182	7.47e-05	0.0219	GAGCCCGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	99	109	-	9.78182	7.47e-05	0.0219	CCGGAGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	99	109	-	9.78182	7.47e-05	0.0219	CCGGAGGCGCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	39	50	+	11.0306	7.47e-05	0.0866	GACCCTAGGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	36	47	-	11.0306	7.47e-05	0.0866	GACCCTAGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	36	47	-	11.0306	7.47e-05	0.0866	GACCCTAGGGCA
ETV3	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
ETV3	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	10.9859	7.47e-05	0.167	GCCGGAAGCA
HOXD13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	48	57	+	11.2222	7.47e-05	1	CTTATAAAAA
HOXD13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	48	57	+	11.2222	7.47e-05	1	CTTATAAAAA
HOXD13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	48	57	+	11.2222	7.47e-05	1	CTTATAAAAA
CEBPB	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	4	13	+	11.48	7.47e-05	0.822	CTGACGCAAT
CEBPB	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	61	70	-	11.48	7.47e-05	0.822	CTGACGCAAT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	77	94	-	-15.1053	7.47e-05	0.0539	GGGACGGGGCAAGGGAAG
RXRA::VDR	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	45	59	-	5.68807	7.47e-05	1	GGGTCACGGGAGTCA
FLI1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	38	47	+	11	7.47e-05	0.125	ACAGGAAATA
FLI1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	68	77	-	11	7.47e-05	0.125	ACAGGAAATA
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	12	25	+	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	12	25	+	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	12	25	+	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	12	25	+	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	24	37	+	10.9808	7.47e-05	0.223	CGCAGCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	58	71	-	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	58	71	-	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	58	71	-	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	58	71	-	10.9808	7.47e-05	0.223	GAGCGGTGACTAAG
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	+	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	+	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	-	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	-	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	45	54	+	11.1154	7.48e-05	0.175	CTCACATGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	45	54	+	11.1154	7.48e-05	0.175	CTCACATGAT
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	-	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	-	11.1154	7.48e-05	0.175	GTCATGTGAT
TFEB	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	+	11.1154	7.48e-05	0.175	GTCATGTGAT
RXRB	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	47	60	+	0.309091	7.48e-05	0.546	GAGTTAAAAGGGGA
MNT	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	-	11.9848	7.48e-05	0.338	GCCACGTGAA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	4	19	+	10.0727	7.48e-05	0.04	CCCCCCCCCCCCCCAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	4	19	+	10.0727	7.48e-05	0.04	CCCCCCCCCCCCCCAC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	24	+	10.0727	7.48e-05	0.04	CCCCCCCCCCCCGTGT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	24	+	10.0727	7.48e-05	0.04	CCCCCCCCCCCCGTGT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	91	106	-	10.0727	7.48e-05	0.04	CCCCCCCCCCCCGTGT
EOMES	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	53	65	+	10.9756	7.48e-05	1	TGGGTGTGATGAA
EOMES	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	50	62	-	10.9756	7.48e-05	1	TGGGTGTGATGAA
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr16:54962441..54962555,-__344.1.0.0	97	112	-	-9.92308	7.48e-05	0.329	AGAGCCGCGGCGACGA
Dmbx1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	80	96	-	11.1842	7.48e-05	1	AGACTGGGATTATGAAT
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	29	42	+	3.42424	7.48e-05	0.379	TCCCTCCCAGGGAG
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	29	42	+	3.42424	7.48e-05	0.379	TCCCTCCCAGGGAG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	20	30	+	10.8364	7.48e-05	0.0714	TGCCCGAGGGG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	20	30	+	10.8364	7.48e-05	0.0714	TGCCCGAGGGG
NKX6-2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	9.92	7.48e-05	1	CCAATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	9.92	7.48e-05	1	CCAATTAA
NKX6-2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	9.92	7.48e-05	1	CCAATTAA
LBX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	+	11.2381	7.48e-05	1	TTAATTGG
LBX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	+	11.2381	7.48e-05	1	TTAATTGG
LBX1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	+	11.2381	7.48e-05	1	TTAATTGG
VAX1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	14	21	-	10.1361	7.48e-05	1	CTAATTAT
VAX1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	55	62	-	10.1361	7.48e-05	1	CTAATTAT
VAX1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	78	85	+	10.1361	7.48e-05	1	CTAATTAT
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	9.92	7.48e-05	1	CCAATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	9.92	7.48e-05	1	CCAATTAA
NKX6-1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	53	60	-	10.9661	7.48e-05	1	GTCATTAA
NKX6-1	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	71	78	-	10.9661	7.48e-05	1	GTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	81	88	-	10.9661	7.48e-05	1	GTCATTAA
NKX6-1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	81	88	-	10.9661	7.48e-05	1	GTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	81	88	-	10.9661	7.48e-05	1	GTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	81	88	-	10.9661	7.48e-05	1	GTCATTAA
LBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	-	11.2381	7.48e-05	1	TTAATTGG
LBX1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	-	11.2381	7.48e-05	1	TTAATTGG
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	7	27	+	8.70968	7.48e-05	0.187	TTGGATTTCCAGTTTCTGGTC
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	7	27	+	8.70968	7.48e-05	0.187	TTGGATTTCCAGTTTCTGGTC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	24	33	+	11.0408	7.48e-05	0.152	ATCACGTGCG
TFE3	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	82	91	-	11.0408	7.48e-05	0.152	ATCACGTGCG
ETS1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	11.2069	7.48e-05	0.113	AGCGGAAGCA
ETS1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	11.2069	7.48e-05	0.113	AGCGGAAGCA
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	28	37	-	10.6552	7.48e-05	0.14	CGCACCTGTC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	28	37	-	10.6552	7.48e-05	0.14	CGCACCTGTC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	28	37	-	10.6552	7.48e-05	0.14	CGCACCTGTC
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	28	37	-	10.6552	7.48e-05	0.14	CGCACCTGTC
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	28	37	-	10.6552	7.48e-05	0.14	CGCACCTGTC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	95	104	+	10.6552	7.48e-05	0.14	CGCACCTGTC
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	17	31	-	9.54545	7.48e-05	0.348	AAAGATGAGTCAGAA
E2F7	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	62	75	-	-5.09836	7.48e-05	1	TTTTCGCGCCCCAA
E2F7	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	40	53	+	-5.09836	7.48e-05	1	TTTTCGCGCCCCAA
EGR1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	9	22	+	10.0577	7.48e-05	0.0269	CGCACGCCGACGCG
EGR1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	4	17	-	10.0577	7.48e-05	0.0269	CACACACCCACGGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	18	31	+	10.0577	7.48e-05	0.0269	GCGCTGCCCTCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	77	90	+	10.0577	7.48e-05	0.0269	CCTATGCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	77	90	+	10.0577	7.48e-05	0.0269	CCTATGCCTCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	77	90	+	10.0577	7.48e-05	0.0269	CCTATGCCTCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	77	90	+	10.0577	7.48e-05	0.0269	CCTATGCCTCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	77	90	+	10.0577	7.48e-05	0.0269	CCTATGCCTCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	68	81	-	10.0577	7.48e-05	0.0269	GTGCCTCTCCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	98	111	+	10.0577	7.48e-05	0.0269	CACACACCCACGGA
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	98	111	+	10.0577	7.48e-05	0.0269	CACACACCCACGGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	93	106	-	10.0577	7.48e-05	0.0269	CGCACGCCGACGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	93	106	-	10.0577	7.48e-05	0.0269	CGCACGCCGACGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	93	106	-	10.0577	7.48e-05	0.0269	CGCACGCCGACGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	93	106	-	10.0577	7.48e-05	0.0269	CGCACGCCGACGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	31	43	+	10.0984	7.48e-05	0.0589	GGCCGGCCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	31	43	+	10.0984	7.48e-05	0.0589	GGCCGGCCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	31	43	+	10.0984	7.48e-05	0.0589	GGCCGGCCGGGCT
ELF1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	44	55	+	8.74545	7.48e-05	0.127	GATCCGGAAGAG
E2F4	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	66	76	-	10.6379	7.48e-05	0.0509	TGGCGGGGACG
HOXC11	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	61	-	11.2759	7.48e-05	1	CCTCGTAAAAG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	41	53	-	11.5306	7.49e-05	0.183	GCCAGCTGCGCGG
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	41	53	-	11.5306	7.49e-05	0.183	GCCAGCTGCGCGG
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	41	53	-	11.5306	7.49e-05	0.183	GCCAGCTGCGCGG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	41	53	-	11.5306	7.49e-05	0.183	GCCAGCTGCGCGG
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	-	11.4727	7.49e-05	0.729	ATTACGTAAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	5	21	+	3.43636	7.49e-05	0.0318	GAAGCCCCTCCCAGGAT
SP4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	16	32	-	3.43636	7.49e-05	0.0318	CCCGCCCCTCCCTCCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	27	43	-	3.43636	7.49e-05	0.0318	AGGGCCCCGCCCTGCTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	27	43	-	3.43636	7.49e-05	0.0318	AGGGCCCCGCCCTGCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	27	43	-	3.43636	7.49e-05	0.0318	AGGGCCCCGCCCTGCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	27	43	-	3.43636	7.49e-05	0.0318	AGGGCCCCGCCCTGCTC
SP4	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	34	50	-	3.43636	7.49e-05	0.0318	CCACCCCCGCCCCACTG
HSF4	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	18	30	+	10.561	7.49e-05	1	TTCCAGATTGGTC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	26	38	+	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	26	38	+	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	57	69	+	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	46	58	-	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	46	58	-	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	77	89	-	8	7.49e-05	0.174	TCCCCGGAAGCAC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	97	109	+	8	7.49e-05	0.174	CAGCCGGAAACAG
CTCF	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	11	29	+	8.45902	7.49e-05	0.127	CGGCCGCCAGCAGACGCCG
CTCF	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	86	104	-	8.45902	7.49e-05	0.127	CGGCCGCCAGCAGACGCCG
CTCF	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	87	105	-	8.45902	7.49e-05	0.127	GGGCCAGTAGTTGGCTGGG
Gabpa	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	29	39	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	65	75	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	65	75	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	65	75	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	65	75	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	65	75	+	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	76	86	-	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	76	86	-	10.6885	7.49e-05	0.071	CCGGAAGAACA
Gabpa	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	76	86	-	10.6885	7.49e-05	0.071	CCGGAAGAACA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	6	17	+	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	6	17	+	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	6	17	+	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	6	17	+	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	24	35	+	11.1091	7.49e-05	0.0578	CCCCCTCCGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	30	41	-	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	74	85	+	11.1091	7.49e-05	0.0578	AGCCCCGGGCCC
TBP	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	49	63	-	11	7.49e-05	0.651	ATATATAAAGCCACA
NFE2	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	13	23	-	5.36735	7.49e-05	0.359	GATGAGCCATT
NFE2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.1.0	63	73	+	5.36735	7.49e-05	0.359	GATGAGCCATT
NFE2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.0.0	63	73	+	5.36735	7.49e-05	0.359	GATGAGCCATT
NFE2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.1	63	73	+	5.36735	7.49e-05	0.359	GATGAGCCATT
NFE2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.0	63	73	+	5.36735	7.49e-05	0.359	GATGAGCCATT
NFE2	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	92	102	+	5.36735	7.49e-05	0.359	GATGAGCCATT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	65	82	+	-15.1184	7.49e-05	0.0539	GGGAGGGAGGCGGTTAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	3	20	-	-15.1184	7.49e-05	0.0539	GAGGGGAGGGAGGGCGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	3	20	-	-15.1184	7.49e-05	0.0539	GAGGGGAGGGAGGGCGGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	16	26	+	11.25	7.49e-05	0.401	TGAATGAGTAA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	16	26	+	11.25	7.49e-05	0.401	TGAATGAGTAA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	65	75	-	11.25	7.49e-05	0.401	TGAATGAGTAA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	65	75	-	11.25	7.49e-05	0.401	TGAATGAGTAA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	50	60	+	10.8699	7.49e-05	0.0248	GCCACACCCTA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	50	60	+	10.8699	7.49e-05	0.0248	GCCACACCCTA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	11	21	-	10.8699	7.49e-05	0.0248	GCCACACCCTA
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	11	21	-	10.8699	7.49e-05	0.0248	GCCACACCCTA
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	11	25	+	10.5385	7.49e-05	0.451	AGGGCAGCCCCGCCC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	11	25	+	10.5385	7.49e-05	0.451	AGGGCAGCCCCGCCC
ESR2	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	3	17	-	10.5385	7.49e-05	0.451	CGGTCACGAGGCCCT
ESR2	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	24	38	+	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
ESR2	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	52	66	+	10.5385	7.49e-05	0.451	AGGGGAGCTTGACTC
ESR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	77	91	-	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
ESR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	77	91	-	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
ESR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	77	91	-	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
ESR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	77	91	-	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	77	91	-	10.5385	7.49e-05	0.451	ATGTCAGCCAGCGCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	6	20	+	6.05172	7.49e-05	0.0417	CCCCGCCCCCGACAC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	6	20	+	6.05172	7.49e-05	0.0417	CCCCGCCCCCGACAC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	6	20	+	6.05172	7.49e-05	0.0417	CCCCGCCCCCGACAC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	6	20	+	6.05172	7.49e-05	0.0417	CCCCGCCCCCGACAC
EGR3	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	2	16	-	6.05172	7.49e-05	0.0417	CTCCGCCTCCACCCC
EGR3	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	18	32	+	6.05172	7.49e-05	0.0417	GCTCTCCCCCGCAGC
EGR3	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	12	26	-	6.05172	7.49e-05	0.0417	AAACGCCTACACTCA
EGR3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	17	31	-	6.05172	7.49e-05	0.0417	CTCCGCCTCCACCCC
EGR3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	84	98	+	6.05172	7.49e-05	0.0417	CTCCGCCTCCACCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	83	97	-	6.05172	7.49e-05	0.0417	GCTCTCCCCCGCAGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	83	97	-	6.05172	7.49e-05	0.0417	GCTCTCCCCCGCAGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	83	97	-	6.05172	7.49e-05	0.0417	GCTCTCCCCCGCAGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	83	97	-	6.05172	7.49e-05	0.0417	GCTCTCCCCCGCAGC
EGR3	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	99	113	+	6.05172	7.49e-05	0.0417	CTCCGCCTCCACCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	95	109	-	6.05172	7.49e-05	0.0417	CCCCGCCCCCGACAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	1	21	-	9.42857	7.49e-05	0.0209	GAAGGAGCCCTGAGAGGAGCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	1	21	-	9.42857	7.49e-05	0.0209	GAAGGAGCCCTGAGAGGAGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	20	40	-	9.42857	7.49e-05	0.0209	GAGGGCGGGGGCTGGGGTGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	21	41	-	9.42857	7.49e-05	0.0209	GGGGAAGTCGAAGCAAGAGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	21	41	-	9.42857	7.49e-05	0.0209	GGGGAAGTCGAAGCAAGAGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	68	88	-	9.42857	7.49e-05	0.0209	GGGGCGGGGGGGGGTGGGACG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	14	34	+	9.42857	7.49e-05	0.0209	GGTGGGGGTGGGGGTGGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	14	34	+	9.42857	7.49e-05	0.0209	AGAACAGGCAGGGCCGGAAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	14	34	+	9.42857	7.49e-05	0.0209	AGAACAGGCAGGGCCGGAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	20	40	+	9.42857	7.49e-05	0.0209	GGTGGGGGTGGGGGTGGGGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	26	46	+	9.42857	7.49e-05	0.0209	GGTGGGGGTGGGGGTGGGGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	27	47	+	9.42857	7.49e-05	0.0209	GGGGCGGGGGGGGGTGGGACG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	49	69	+	9.42857	7.49e-05	0.0209	AGGGCAGGGCGGGCCGGAAAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	25	34	-	10.4954	7.49e-05	0.0553	GCCTCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	25	34	-	10.4954	7.49e-05	0.0553	GCCTCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	56	65	+	10.4954	7.49e-05	0.0553	CCACCCCCCT
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	48	57	-	10.4954	7.49e-05	0.0553	GCCTCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	68	77	+	10.4954	7.49e-05	0.0553	CCACCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	68	77	+	10.4954	7.49e-05	0.0553	CCACCCCCCT
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	68	77	-	10.4954	7.49e-05	0.0553	CCACCCCCCT
ZNF740	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	88	97	-	10.4954	7.49e-05	0.0553	GCCTCCCCAC
ZBTB18	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	75	87	+	9.44286	7.49e-05	0.731	TCGCCAGATGCTG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	61	72	-	10.7869	7.49e-05	0.447	TTTGGCGCGCTG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	61	72	-	10.7869	7.49e-05	0.447	TTTGGCGCGCTG
Foxo1	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	80	90	+	11.3966	7.49e-05	0.902	ACTTGTTTATT
SP8	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	9	20	-	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
SP8	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	27	38	+	10.6579	7.49e-05	0.0349	CACCCTCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	29	40	-	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	29	40	-	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	38	49	-	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
SP8	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	77	+	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
SP8	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	106	+	10.6579	7.49e-05	0.0349	CCCCCTCCCCTC
LBX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	+	10.3051	7.49e-05	1	GCCAATTACG
LBX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	+	10.3051	7.49e-05	1	GCCAATTACG
LBX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	-	10.3051	7.49e-05	1	GCCAATTACG
LBX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	-	10.3051	7.49e-05	1	GCCAATTACG
LBX2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	+	10.3051	7.49e-05	1	GCCAATTACG
LBX2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	-	10.3051	7.49e-05	1	GCCAATTACG
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	58	69	-	6.4898	7.49e-05	0.224	AATGACGTGACC
STAT3	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	88	98	+	10.898	7.5e-05	0.311	TTGCTGAGAAG
PLAG1	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	28	41	+	5.30612	7.5e-05	0.0744	GTAGCCGAAGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	90	103	+	5.30612	7.5e-05	0.0744	GGGGCTTATAGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	90	103	+	5.30612	7.5e-05	0.0744	GGGGCTTATAGGGA
ZBTB33	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.0.0	80	94	+	10.0758	7.5e-05	0.12	GCCCCGCGGGCTTCC
ZBTB33	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.0	80	94	+	10.0758	7.5e-05	0.12	GCCCCGCGGGCTTCC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr12:53268001..53268115,-__2235.1.1.1	80	94	+	10.0758	7.5e-05	0.12	GCCCCGCGGGCTTCC
HEY2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	36	45	+	10.7931	7.5e-05	0.209	GACACGAGCC
HEY2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	70	79	-	10.7931	7.5e-05	0.209	GACACGAGCC
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	27	41	+	10.3191	7.5e-05	0.346	CGGCGTGACGTCACT
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	27	41	+	10.3191	7.5e-05	0.346	CGGCGTGACGTCACT
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	27	41	+	10.3191	7.5e-05	0.346	CGGCGTGACGTCACT
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	27	41	+	10.3191	7.5e-05	0.346	CGGCGTGACGTCACT
XBP1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	48	61	-	9.55769	7.5e-05	0.529	CCGGCCACGTGATC
KLF5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	3	12	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	5	14	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	6	15	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	10	19	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	6	15	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.1.0	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:115047023..115047137,+__1306.1.0.0	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	10	19	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	10	19	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	20	29	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	11	20	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	25	34	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	17	26	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	17	26	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	17	26	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	17	26	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	17	26	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	19	28	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	19	28	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	19	28	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	29	38	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	24	33	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	24	33	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	35	44	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	27	36	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	27	36	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	27	36	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	27	36	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	37	46	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	29	38	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	29	38	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	29	38	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	39	48	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	39	48	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	39	48	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	30	39	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	31	40	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	32	41	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	41	50	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	41	50	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	33	42	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	42	51	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	43	52	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	43	52	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	34	43	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.0.0	34	43	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	34	43	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	35	44	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	45	54	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	40	49	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	49	58	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	49	58	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	40	49	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	40	49	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	40	49	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	40	49	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	49	58	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	49	58	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	50	59	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	41	50	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	51	60	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	43	52	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	43	52	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	65	74	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	56	65	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	66	75	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	57	66	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	57	66	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	58	67	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	69	78	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	60	69	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	61	70	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	72	81	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	72	81	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	73	82	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	74	83	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	75	84	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	75	84	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	76	85	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	67	76	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	69	78	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	69	78	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	69	78	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	69	78	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	79	88	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	79	88	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	79	88	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	79	88	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	86	95	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	86	95	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	86	95	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	86	95	+	11.0204	7.5e-05	0.0247	GCCTCTCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	87	96	+	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	89	98	+	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	81	90	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	86	95	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	96	105	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	100	109	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	101	110	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	101	110	-	11.0204	7.5e-05	0.0247	GCCCCTCCTC
KLF5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	103	112	-	11.0204	7.5e-05	0.0247	CCTCCTCCCC
NR2C2	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	27	41	+	9.12857	7.5e-05	0.122	GGAGTGGGGAGGGCG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	74	88	-	9.12857	7.5e-05	0.122	GGAGTGGGGAGGGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	95	109	+	9.12857	7.5e-05	0.122	GGAGGTAGAAGGTGG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	26	39	+	6	7.5e-05	0.56	CAACCCGCTGTTTT
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	26	39	+	6	7.5e-05	0.56	CAACCCGCTGTTTT
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	-	11.2727	7.5e-05	0.137	AACGGAAATA
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	-	11.2727	7.5e-05	0.137	AACGGAAATA
ERG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	+	11.2727	7.5e-05	0.137	AACGGAAATA
ERG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	+	11.2727	7.5e-05	0.137	AACGGAAATA
Npas2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	11.7049	7.5e-05	0.333	CGCACGTGCT
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	11.7049	7.5e-05	0.333	CGCACGTGCT
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	11.7049	7.5e-05	0.333	CGCACGTGCT
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	11.7049	7.5e-05	0.333	CGCACGTGCT
HINFP	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	1	12	+	10.5	7.5e-05	0.109	GTGGGTCCGCTC
HINFP	WILDTYPE__mrna.noflip.NA__chr3:42623748..42623862,-__1286.1.0.0	9	20	-	10.5	7.5e-05	0.109	TGCGGTCCGCGC
HINFP	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	103	114	-	10.5	7.5e-05	0.109	GTGGGTCCGCTC
RXRG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	49	62	-	1.3617	7.5e-05	0.48	CGGGCCGAAGGTCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	49	62	-	1.3617	7.5e-05	0.48	CGGGCCGAAGGTCG
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	49	62	-	1.3617	7.5e-05	0.48	CGGGCCGAAGGTCG
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	49	62	-	1.3617	7.5e-05	0.48	CGGGCCGAAGGTCG
ETV4	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	11.3793	7.5e-05	0.126	GCCGGAAACA
ETV4	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	11.3793	7.5e-05	0.126	GCCGGAAACA
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	11.3793	7.5e-05	0.126	GCCGGAAACA
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	11.3793	7.5e-05	0.126	GCCGGATGCG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	11.3793	7.5e-05	0.126	GCCGGAAACA
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	27	37	+	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	27	37	+	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	58	68	+	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	88	98	+	11.2545	7.5e-05	0.147	ACGAGGAAGAG
ELF5	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	17	27	-	11.2545	7.5e-05	0.147	ACGAGGAAGAG
ELF5	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	32	-	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	57	-	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	57	-	11.2545	7.5e-05	0.147	CCCCGGAAGCA
ELF5	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	88	-	11.2545	7.5e-05	0.147	CCCCGGAAGCA
E2F7	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	40	53	-	-5.11475	7.5e-05	1	CATAGCCGCCAAAA
E2F7	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	94	107	-	-5.11475	7.5e-05	1	CATAGCCGCCAAAA
E2F7	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	62	75	+	-5.11475	7.5e-05	1	CATAGCCGCCAAAA
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	99	108	+	11.4828	7.5e-05	0.859	GCCACCTGGA
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	99	108	+	11.4828	7.5e-05	0.859	GCCACCTGGA
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr4:95373869..95373983,-__2199.1.0.0	9	22	-	8.30303	7.5e-05	0.338	CTGCCACGGAAACG
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	25	38	+	8.30303	7.5e-05	0.338	CTGCCACGGAAACG
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	35	44	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.1	56	65	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	56	65	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.2.0	56	65	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	56	65	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	56	65	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.2.0	76	85	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	76	85	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.1	76	85	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	76	85	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	76	85	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	104	113	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	104	113	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	104	113	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	104	113	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	104	113	-	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	30	39	+	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	63	72	+	11.0976	7.5e-05	0.472	CTCAGCCCAG
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	104	113	+	11.0976	7.5e-05	0.472	CTCAGCCCAG
Zfx	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	25	38	-	10.5455	7.5e-05	0.0658	GGCGCCCCGCCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	77	90	+	10.5455	7.5e-05	0.0658	GGCGCCCCGCCCTC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	42	-	9.60345	7.5e-05	0.0554	AGCCGGAAGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	86	98	+	9.60345	7.5e-05	0.0554	TCCCGGCCGGGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	93	105	+	9.60345	7.5e-05	0.0554	CCCCGCCGGGGCC
GLIS3	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	21	34	-	3.40909	7.5e-05	0.379	CGCCCCCCGCCGCG
GLIS3	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	81	94	+	3.40909	7.5e-05	0.379	CGCCCCCCGCCGCG
ONECUT3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	45	58	-	9.22472	7.51e-05	1	AATAAATAAATAAC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	52	69	+	-15.1316	7.51e-05	0.0539	GGAGGCGGTGAAGGCGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	46	63	-	-15.1316	7.51e-05	0.0539	GGAGGCGGTGAAGGCGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	50	67	-	-15.1316	7.51e-05	0.0539	GAGGGGAGAGGAGGAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	50	67	-	-15.1316	7.51e-05	0.0539	GAGGGGAGAGGAGGAAAA
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	95	106	+	7.91743	7.51e-05	0.855	AGACAGGCGACA
BHLHE41	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	-	7.80769	7.51e-05	0.215	GTCATGTGAC
MAF::NFE2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	37	51	-	8.37705	7.51e-05	0.477	CTGAGACAGCAGTGG
MAF::NFE2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	64	78	+	8.37705	7.51e-05	0.477	CTGAGACAGCAGTGG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	46	63	-	8.90244	7.51e-05	0.208	AAACCCCTGATAGGCCCA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	84	94	+	11.2041	7.51e-05	0.392	GCTCCCCGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	84	94	+	11.2041	7.51e-05	0.392	GCTCCCCGGAA
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	18	27	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	18	27	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	24	33	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	24	33	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	39	48	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	52	61	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	68	77	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	96	105	+	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	12	21	-	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	54	63	-	11.236	7.51e-05	0.93	GGCCTGGCAT
Hand1::Tcf3	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	88	97	-	11.236	7.51e-05	0.93	GGCCTGGCAT
KLF14	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	10	23	+	8.51724	7.51e-05	0.0371	AAGCCCGCCCCTCG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	35	48	-	8.51724	7.51e-05	0.0371	TGTCCCGCCCCGCC
KLF14	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	92	105	-	8.51724	7.51e-05	0.0371	AAGCCCGCCCCTCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	10	20	+	10.6731	7.51e-05	0.0182	TTTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	11	21	-	10.6731	7.51e-05	0.0182	TTTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	11	21	-	10.6731	7.51e-05	0.0182	TTTCCGCCCAC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	74	84	+	10.6731	7.51e-05	0.0182	TTTCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	74	84	+	10.6731	7.51e-05	0.0182	TTTCCGCCCAC
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	30	45	+	10.5827	7.51e-05	1	GTTAATAATTAACTGT
ZIC1	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	42	55	+	6.02128	7.51e-05	0.102	GACCCCTCGGGGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	43	56	+	6.02128	7.51e-05	0.102	GGGCTCCTGCGGCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	59	72	-	6.02128	7.51e-05	0.102	GGGCTCCTGCGGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	60	73	-	6.02128	7.51e-05	0.102	GACCCCTCGGGGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	11.2885	7.51e-05	0.146	CCCGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	11.2885	7.51e-05	0.146	CCCGGAAATG
FOS	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	27	37	-	11.2766	7.51e-05	0.261	TATGACTCAGG
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	69	78	-	9.4898	7.51e-05	0.241	TGGAAATCCC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	24	37	-	10.5806	7.51e-05	0.471	CCTCCTGGAGAGGA
Bcl6	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	86	99	-	10.5806	7.51e-05	0.471	CTTCCTAGACCGCA
Bcl6	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	16	29	+	10.5806	7.51e-05	0.471	CTTCCTAGACCGCA
SCRT1	WILDTYPE__Lincrna.noflip.NA__chr11:62620470..62620584,-__182.1.0.0	30	44	+	6.91803	7.52e-05	0.927	AAGTTACAGGTGAGT
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	9	19	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	9	19	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	9	19	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	9	19	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	22	32	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	47	57	-	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	58	68	+	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	96	106	-	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	98	108	-	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	100	110	-	9.76364	7.52e-05	0.0219	CCGGCCGCGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	10	23	-	5.29592	7.52e-05	0.0744	GGGGTGAAGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	10	23	-	5.29592	7.52e-05	0.0744	GGGGTGAAGGGGTG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	51	64	-	5.29592	7.52e-05	0.0744	TGGGGGAAAGGGTG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	92	105	-	5.29592	7.52e-05	0.0744	TGGGGGAAAGGGTG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	10	23	+	5.29592	7.52e-05	0.0744	TGGGGGAAAGGGTG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	51	64	+	5.29592	7.52e-05	0.0744	TGGGGGAAAGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	53	66	+	5.29592	7.52e-05	0.0744	GAGGGGGGAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	53	66	+	5.29592	7.52e-05	0.0744	GAGGGGGGAGGGGG
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	5	19	-	10.1724	7.52e-05	0.0161	CGCCCACCTCCCTGA
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	5	19	-	10.1724	7.52e-05	0.0161	CGCCCACCTCCCTGA
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	34	48	+	10.1724	7.52e-05	0.0161	GCTCCTCCTCGCCGT
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	20	34	-	10.1724	7.52e-05	0.0161	GCCCCTCTCTCCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	20	34	-	10.1724	7.52e-05	0.0161	GCCCCTCTCTCCTCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	20	34	-	10.1724	7.52e-05	0.0161	GCCCCTCTCTCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	20	34	-	10.1724	7.52e-05	0.0161	GCCCCTCTCTCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	22	36	-	10.1724	7.52e-05	0.0161	TTCCCTCCCCTAGTG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	22	36	-	10.1724	7.52e-05	0.0161	TTCCCTCCCCTAGTG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	22	36	-	10.1724	7.52e-05	0.0161	TTCCCTCCCCTAGTG
SP2	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	22	36	-	10.1724	7.52e-05	0.0161	CGCCCACCTCCCTGA
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	26	40	-	10.1724	7.52e-05	0.0161	GCACCGCCCACCATG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	26	40	-	10.1724	7.52e-05	0.0161	GCACCGCCCACCATG
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	41	55	+	10.1724	7.52e-05	0.0161	CTTCCTCCTCCTTCT
SP2	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	39	53	-	10.1724	7.52e-05	0.0161	GCCCCACCCTGGGAC
SP2	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	62	76	+	10.1724	7.52e-05	0.0161	GCCCCACCCTGGGAC
SP2	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	89	+	10.1724	7.52e-05	0.0161	GCACCGCCCACCATG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	79	93	+	10.1724	7.52e-05	0.0161	CGCCCACCTCCCTGA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	79	93	+	10.1724	7.52e-05	0.0161	CGCCCACCTCCCTGA
SP2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	81	95	+	10.1724	7.52e-05	0.0161	GCCCCTCTCTCCTCC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	14	25	+	8.83607	7.52e-05	0.115	AAACAGGAAATG
ELF4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	52	63	+	8.83607	7.52e-05	0.115	GTAGCGGAAGTC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	27	-	8.83607	7.52e-05	0.115	AAACAGGAAATG
ELF4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	63	-	8.83607	7.52e-05	0.115	GTAGCGGAAGTC
JUN	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	22	34	-	10.0612	7.52e-05	0.317	CGTGTGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	81	93	+	10.0612	7.52e-05	0.317	CGTGTGACGTCAC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	70	79	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	70	79	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	70	79	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	70	79	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	70	79	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	100	109	+	11.1346	7.52e-05	0.115	GCCGGAAGCA
ETV6	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	15	-	11.1346	7.52e-05	0.115	GCCGGAAGCA
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr22:42486869..42486983,+__527.1.0.0	54	65	-	10.6714	7.52e-05	0.217	AGCACCCACCGT
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	1	11	-	11.1455	7.52e-05	0.0552	AGCCCGAAGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	3	13	-	11.1455	7.52e-05	0.0552	CCCCTCGGGCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr19:3606824..3606938,-__1266.1.0.0	8	18	-	11.1455	7.52e-05	0.0552	CCCCTCGGGCC
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	104	114	+	11.1455	7.52e-05	0.0552	AGCCCGAAGCC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	22	32	-	10.3273	7.52e-05	0.236	CATGAGTCAGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	40	50	+	10.3273	7.52e-05	0.236	CATGAGTCAGC
TFAP4	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	25	34	-	10.6	7.52e-05	0.655	CCCAGCTGAC
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	89	98	+	10.6	7.52e-05	0.655	CCCAGCTGAC
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	89	98	+	10.6	7.52e-05	0.655	CCCAGCTGAC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	44	63	-	3.36697	7.52e-05	0.0682	ACCACAGCCACCACAAGCCG
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	1	12	+	11.01	7.52e-05	1	CAGATGCAAATG
POU2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	1	12	+	11.01	7.52e-05	1	CAGATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	1	12	+	11.01	7.52e-05	1	CAGATGCAAATG
POU2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	1	12	+	11.01	7.52e-05	1	CAGATGCAAATG
RAX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	2	11	+	11.0169	7.52e-05	1	ATCAATTAAT
RAX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	2	11	+	11.0169	7.52e-05	1	ATCAATTAAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	14	22	+	9.10345	7.52e-05	0.347	ATGTGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	36	44	+	9.10345	7.52e-05	0.347	ATGTGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	36	44	+	9.10345	7.52e-05	0.347	ATGTGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	47	55	-	9.10345	7.52e-05	0.347	ATGTGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	47	55	-	9.10345	7.52e-05	0.347	ATGTGTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	93	101	-	9.10345	7.52e-05	0.347	ATGTGTCAT
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	28	38	-	8.24138	7.52e-05	1	CAAAGGTCAAA
ESRRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	28	38	-	8.24138	7.52e-05	1	CAAAGGTCAAA
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	28	38	-	8.24138	7.52e-05	1	CAAAGGTCAAA
FOSL2	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	20	30	-	10.2545	7.52e-05	0.237	CGCTGACTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	85	95	+	10.2545	7.52e-05	0.237	CGCTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	85	95	+	10.2545	7.52e-05	0.237	CGCTGACTCAG
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	18	29	+	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	18	29	+	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	18	29	+	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	18	29	+	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	26	37	+	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	26	37	+	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	31	42	+	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	45	56	+	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	68	79	+	10.0328	7.52e-05	0.136	GGGCCGGAAGTT
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	59	70	-	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	59	70	-	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	59	70	-	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	84	-	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	84	-	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	89	-	10.0328	7.52e-05	0.136	ATTGCGGAAGTT
EHF	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	86	97	-	10.0328	7.52e-05	0.136	AGCCAGGAAGTC
IRF8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	1	14	-	-3	7.52e-05	0.771	GAGAAACTGATATC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	1	14	-	-3	7.52e-05	0.771	GAGAAACTGATATC
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	1	14	-	-3	7.52e-05	0.771	GAGAAACTGATATC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	1	14	-	-3	7.52e-05	0.771	GAGAAACTGATATC
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	1	14	-	-3	7.52e-05	0.771	GAGAAACTGATATC
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	70	86	+	10.6711	7.52e-05	0.668	GAGCGGACGCACTTGGC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	93	+	11.0204	7.52e-05	0.0866	CGCCTCAGGCCG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	58	75	+	-15.1447	7.52e-05	0.0539	GGAAGGAGAGAGGAAGAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	40	57	-	-15.1447	7.52e-05	0.0539	GGGAGGAGGGAGGAAGTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	31	47	-	3.41818	7.52e-05	0.0319	GAGACCACGCTCCCTCA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	31	47	-	3.41818	7.52e-05	0.0319	GAGACCACGCTCCCTCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	63	79	+	3.41818	7.52e-05	0.0319	CCTCACCCGCCCCCTTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	63	79	+	3.41818	7.52e-05	0.0319	CCTCACCCGCCCCCTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	63	79	+	3.41818	7.52e-05	0.0319	CCTCACCCGCCCCCTTC
ZNF410	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	42	58	+	-3.52727	7.52e-05	1	TGCAGACCACAATGCAC
ZNF410	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	57	73	-	-3.52727	7.52e-05	1	TGCAGACCACAATGCAC
MAX::MYC	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	2	12	+	10.1939	7.53e-05	0.343	TACAACGTGGA
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	42	52	+	10.1939	7.53e-05	0.343	TACAACGTGGA
MAX::MYC	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	63	73	-	10.1939	7.53e-05	0.343	TACAACGTGGA
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	103	113	-	10.1939	7.53e-05	0.343	TACAACGTGGA
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	67	78	-	11.1413	7.53e-05	1	GCTTGTTTTTTC
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	67	78	-	11.1413	7.53e-05	1	GCTTGTTTTTTC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	59	77	-	10.3387	7.53e-05	0.15	GGACCCTGCGGAGCATGCC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	59	77	-	10.3387	7.53e-05	0.15	GGACCCTGCGGAGCATGCC
ZBTB18	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	19	31	+	9.42857	7.53e-05	0.731	GGGGCAGCTGTGT
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	19	31	+	9.42857	7.53e-05	0.731	GGGGCAGCTGTGT
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	19	31	+	9.42857	7.53e-05	0.731	GGGGCAGCTGTGT
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	19	31	+	9.42857	7.53e-05	0.731	GGGGCAGCTGTGT
SPIC	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	59	72	-	10.6901	7.53e-05	0.281	CAAAAGCGGAAACC
IRF1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	66	86	+	8.69355	7.53e-05	0.187	GGCCTCTTCCACTTCCCTTGC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	70	90	-	8.69355	7.53e-05	0.187	TTTTGCTTTCTGTATCGATAG
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	27	41	+	9.5303	7.53e-05	0.348	AGCAATGACTAATCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	27	41	+	9.5303	7.53e-05	0.348	AGCAATGACTAATCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	85	99	-	9.5303	7.53e-05	0.348	AGCAATGACTAATCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	85	99	-	9.5303	7.53e-05	0.348	AGCAATGACTAATCA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.0	72	92	+	4.82653	7.53e-05	0.227	GAGAGCACTTAGCACAGTTCC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.0.0	72	92	+	4.82653	7.53e-05	0.227	GAGAGCACTTAGCACAGTTCC
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833463..209833577,+__1737.1.1.1	72	92	+	4.82653	7.53e-05	0.227	GAGAGCACTTAGCACAGTTCC
REST	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	76	96	+	4.82653	7.53e-05	0.227	CTCTACTCCAAGGAGAGGTGC
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	67	85	+	10.4355	7.53e-05	0.674	TGCTCGCAGGTGCCCTTGC
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	3	13	+	10.9808	7.53e-05	0.0758	GGCCTCAGGGA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	4	14	+	10.9808	7.53e-05	0.0758	ACCCTCAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	4	14	+	10.9808	7.53e-05	0.0758	ACCCTCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	19	29	+	10.9808	7.53e-05	0.0758	AGCCACAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	19	29	+	10.9808	7.53e-05	0.0758	AGCCACAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	42	52	-	10.9808	7.53e-05	0.0758	AGCCACAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	42	52	-	10.9808	7.53e-05	0.0758	AGCCACAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	61	71	+	10.9808	7.53e-05	0.0758	AGCCGGAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	66	76	+	10.9808	7.53e-05	0.0758	AGCCGGAAGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	66	76	+	10.9808	7.53e-05	0.0758	AGCCGGAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	66	76	+	10.9808	7.53e-05	0.0758	AGCCGGAAGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	66	76	-	10.9808	7.53e-05	0.0758	CGCCAGAGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	66	76	-	10.9808	7.53e-05	0.0758	CGCCAGAGGCT
Rarg	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	19	34	+	-2.69388	7.53e-05	0.877	GAGGTCACACGGACAG
Rarg	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	81	96	-	-2.69388	7.53e-05	0.877	GAGGTCACACGGACAG
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	81	96	-	-2.69388	7.53e-05	0.877	GAGGTCACACGGACAG
Sox6	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	3	12	+	11.7857	7.53e-05	0.878	CTATTGTTTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	15	29	+	6.03448	7.53e-05	0.0417	CCCCGCCCACCTTCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	15	29	+	6.03448	7.53e-05	0.0417	CCCCGCCCACCTTCT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	95	104	-	10.5	7.53e-05	0.0261	CGGGTGGGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	96	105	-	10.5	7.53e-05	0.0261	CGGGTGGGGT
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	11	21	+	11.3265	7.53e-05	0.79	ATTGCGTAACT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	11	21	+	11.3265	7.53e-05	0.79	ATTGCGTAACT
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	11	21	+	11.3265	7.53e-05	0.79	ATTGCGTAACT
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	11	21	+	11.3265	7.53e-05	0.79	ATTGCGTAACT
CEBPA	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	15	-	11.3265	7.53e-05	0.79	ATTGCGTAACT
CEBPA	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	104	-	11.3265	7.53e-05	0.79	ATTGCGTAACT
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	38	52	-	10.5577	7.53e-05	0.341	GGGAGTCAGGGGCCA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	70	84	+	10.5577	7.53e-05	0.341	CGGGAGCGAAGTCCA
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	70	84	+	10.5577	7.53e-05	0.341	CGGGAGCGAAGTCCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	70	84	+	10.5577	7.53e-05	0.341	CGGGAGCGAAGTCCA
Gfi1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	3	12	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	3	12	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	13	22	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	19	28	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	51	60	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	56	65	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	56	65	+	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	55	64	-	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	87	96	-	10.9024	7.53e-05	0.548	CCAATCCCAG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	87	96	-	10.9024	7.53e-05	0.548	CCAATCCCAG
ZIC4	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	82	96	-	10.1455	7.53e-05	0.109	AGCCGCCTGCAGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	53	67	+	10.1455	7.53e-05	0.109	TACGCCCTGGCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	53	67	+	10.1455	7.53e-05	0.109	TACGCCCTGGCGCGC
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	4	13	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	4	13	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.0.0	4	13	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.1.0	4	13	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.0.0	56	65	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	56	65	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	81	90	+	11.1774	7.53e-05	0.799	TGCATTCCTT
TEAD4	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	29	38	-	11.1774	7.53e-05	0.799	TGCATTCCTT
REL	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	5	14	+	11	7.53e-05	0.334	GGGCCATTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	16	25	+	11	7.53e-05	0.334	GGGACCTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	16	25	+	11	7.53e-05	0.334	GGGACCTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	57	66	+	11	7.53e-05	0.334	CGGTTTTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	52	61	-	11	7.53e-05	0.334	CGGTTTTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	71	80	+	11	7.53e-05	0.334	CGGTTTTTCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	22	34	-	11.5102	7.54e-05	0.183	ATCAGCTGTCAGA
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	65	77	-	11.5102	7.54e-05	0.183	GTCACCTGCCCCA
Mafb	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	87	98	+	11.1348	7.54e-05	0.865	CTATCGCTGACT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	46	59	-	9.47143	7.54e-05	0.28	CTGACACATCATGG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	46	59	-	9.47143	7.54e-05	0.28	CTGACACATCATGG
Msx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	11.3208	7.54e-05	1	CCAATTAC
Msx3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	11.3208	7.54e-05	1	CCAATTAC
Msx3	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	11.3208	7.54e-05	1	CCAATTAC
Msx3	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	11.3208	7.54e-05	1	CCAATTAC
MSX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	10.8929	7.54e-05	1	GCAATTAG
MSX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	10.8929	7.54e-05	1	GCAATTAG
MSX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	10.8929	7.54e-05	1	GCAATTAG
MSX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	10.8929	7.54e-05	1	GCAATTAG
MSX1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	10.8929	7.54e-05	1	GCAATTAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	48	66	+	8.44262	7.54e-05	0.127	AGAGCGGGAGGGGGCGGTT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	48	66	+	8.44262	7.54e-05	0.127	AGAGCGGGAGGGGGCGGTT
CTCF	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	93	111	+	8.44262	7.54e-05	0.127	GTCCCGGCCGGGGGCAGCC
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	15	24	+	10.6939	7.54e-05	0.274	GGTCATGTGC
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	15	24	+	10.6939	7.54e-05	0.274	GGTCATGTGC
ELK1	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	38	47	-	9.95745	7.54e-05	0.101	GGCGGAAGTT
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	49	58	+	9.95745	7.54e-05	0.101	GGCGGAAGTT
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	49	58	+	9.95745	7.54e-05	0.101	GGCGGAAGTT
ELK1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	66	-	9.95745	7.54e-05	0.101	GGCGGAAGTT
ELK1	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	68	77	+	9.95745	7.54e-05	0.101	GGCGGAAGTT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	85	102	+	-15.1579	7.54e-05	0.0539	GGTATGGAGGGAGGCGGT
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	13	30	-	-15.1579	7.54e-05	0.0539	GGTATGGAGGGAGGCGGT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	46	59	-	10.9615	7.54e-05	0.223	GGCCGCTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	46	59	-	10.9615	7.54e-05	0.223	GGCCGCTGACTCAC
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	26	39	+	4.97959	7.54e-05	0.377	TGGCTCACAGCCCA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	51	70	-	3.3578	7.54e-05	0.0683	AAACAAAAAAACAAAACAAC
RFX3	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	72	87	+	9.01515	7.54e-05	0.391	GGTTGCCCGGGCAATG
RFX3	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	28	43	-	9.01515	7.54e-05	0.391	GGTTGCCCGGGCAATG
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	23	33	-	10.2364	7.54e-05	0.237	GGCTGAGTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	56	66	+	10.2364	7.54e-05	0.237	GGCTGAGTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	73	83	-	10.2364	7.54e-05	0.237	GGCTGAGTCAT
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	73	83	-	10.2364	7.54e-05	0.237	GGCTGAGTCAT
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	31	46	-	6.39655	7.54e-05	0.36	AGTTCCCACAGTGACA
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	31	46	-	6.39655	7.54e-05	0.36	AGTTCCCACAGTGACA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	31	46	-	6.39655	7.54e-05	0.36	AGTTCCCACAGTGACA
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	31	46	-	6.39655	7.54e-05	0.36	AGTTCCCACAGTGACA
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	31	46	-	6.39655	7.54e-05	0.36	AGTTCCCACAGTGACA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	6	16	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	6	16	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	5	15	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	5	15	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	23	33	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	38	48	+	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	36	46	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	45	55	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	46	56	-	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	59	69	+	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	59	69	+	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	60	70	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	65	75	+	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	66	76	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	69	79	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	61	71	-	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	63	73	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	67	77	-	10.2931	7.54e-05	0.0237	CGCCCACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	67	77	-	10.2931	7.54e-05	0.0237	GCAACTCCCAC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	67	77	-	10.2931	7.54e-05	0.0237	GCAACTCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	82	92	+	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	74	84	-	10.2931	7.54e-05	0.0237	GCCAGGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	82	92	-	10.2931	7.54e-05	0.0237	CTCCCTCCCCC
Pax6	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	8	21	-	10.4222	7.54e-05	1	GAAACGCTTGAGTT
Pax6	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	94	107	+	10.4222	7.54e-05	1	GAAACGCTTGAGTT
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	17	26	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	17	26	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	17	26	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	17	26	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	20	29	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	47	56	-	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	59	68	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	59	68	+	10.4862	7.54e-05	0.0553	CTCCCCCCCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	6	18	-	9.72131	7.54e-05	0.0644	CGCCTCGCAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	6	18	-	9.72131	7.54e-05	0.0644	CGCCTCGCAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	+	9.72131	7.54e-05	0.0644	CGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	+	9.72131	7.54e-05	0.0644	CGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	+	9.72131	7.54e-05	0.0644	CGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	+	9.72131	7.54e-05	0.0644	CGCCGCGCAGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	+	9.72131	7.54e-05	0.0644	CGCCGCGCAGGCA
ELK4	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	51	61	-	11.1273	7.54e-05	0.0688	GCTTTTCCGGT
ELK4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	87	97	-	11.1273	7.54e-05	0.0688	CTCCTTCCGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	2	15	-	5.28571	7.54e-05	0.0744	GAGGGGAACGGAGG
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	10	20	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
GCM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	10	20	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
GCM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	36	46	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	36	46	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	60	70	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	60	70	-	10.6531	7.55e-05	0.531	CCTGCGGGCGG
Ar	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	74	90	+	6.2931	7.55e-05	0.882	CGGTCCACTCTGTCCCC
NFYA	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	8	25	+	8.89024	7.55e-05	0.208	CCACCGCCGGTTGGTGGC
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	19	36	-	8.89024	7.55e-05	0.208	TCAAAGCTTATTGGTGGT
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	19	36	-	8.89024	7.55e-05	0.208	TCAAAGCTTATTGGTGGT
NFYA	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	90	107	-	8.89024	7.55e-05	0.208	CCACCGCCGGTTGGTGGC
NR2C2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	25	39	+	9.11429	7.55e-05	0.122	CGGGAGGAGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	38	52	+	9.11429	7.55e-05	0.122	GGGGTTTGGAGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	38	52	+	9.11429	7.55e-05	0.122	GGGGTTTGGAGGTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	60	74	-	9.11429	7.55e-05	0.122	GGGGTTTGGAGGTTA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	60	74	-	9.11429	7.55e-05	0.122	GGGGTTTGGAGGTTA
PAX1	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	35	51	+	5.2	7.55e-05	0.619	GGTCCCGGCTCGACTCA
EGR1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	33	46	-	10.0385	7.55e-05	0.0271	CCCCCTCCCTCGTT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	57	70	+	10.0385	7.55e-05	0.0271	GGCCCGCCCTCTGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	57	70	+	10.0385	7.55e-05	0.0271	GGCCCGCCCTCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	82	+	10.0385	7.55e-05	0.0271	CCCCCTCCCTCGTT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	82	+	10.0385	7.55e-05	0.0271	CCCCCTCCCTCGTT
EGR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	82	+	10.0385	7.55e-05	0.0271	CCCCCTCCCTCGTT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	82	+	10.0385	7.55e-05	0.0271	CCCCCTCCCTCGTT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	75	88	+	10.0385	7.55e-05	0.0271	CTCCTGCCCACAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	75	88	+	10.0385	7.55e-05	0.0271	CTCCTGCCCACAGC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	10.9577	7.55e-05	0.167	ACCGGAAACC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	10.9577	7.55e-05	0.167	ACCGGAAACC
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	23	34	+	10.7191	7.55e-05	1	AGGACAGATGGT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	21	36	+	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	21	36	+	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	21	36	+	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	32	47	+	10.0545	7.55e-05	0.0401	CCCCCCCCCCCCGCAC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	35	50	-	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	35	50	-	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	35	50	-	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
EGR4	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	79	94	-	10.0545	7.55e-05	0.0401	CCCCCCCCCCGCTGTC
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	-	5.64286	7.55e-05	0.401	CATTGTCACGGTGACC
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	68	82	+	10.8889	7.55e-05	1	CTCATTCAGCACACA
MAFK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	9	23	-	10.8889	7.55e-05	1	CTCATTCAGCACACA
Rhox11	FLIPPED__Enhancer.flip.antisense__chr11:46264917..46265031,+__2566.1.0.0	26	42	+	11.0132	7.55e-05	1	GCAACGCTGTTCTGGGA
Rhox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	27	43	+	11.0132	7.55e-05	1	AACCCGCTGTTTTCCGG
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	27	43	+	11.0132	7.55e-05	1	AACCCGCTGTTTTCCGG
Rhox11	WILDTYPE__Enhancer.flip.sense__chr11:46264917..46265031,-__2144.1.0.0	73	89	-	11.0132	7.55e-05	1	GCAACGCTGTTCTGGGA
LHX2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	-	11.2667	7.55e-05	1	GCTAATTGGC
TP53	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	9	26	+	6.22449	7.55e-05	0.979	AACGCGCCCTGACACGTG
Hoxd9	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	26	35	-	10.8611	7.55e-05	1	CCAATTAAAT
Hoxd9	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	49	58	-	10.8611	7.55e-05	1	GCAATTAATT
Hoxd9	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	49	58	-	10.8611	7.55e-05	1	GCAATTAATT
Hoxd9	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	66	+	10.8611	7.55e-05	1	GCAATTAATT
Hoxd9	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	89	+	10.8611	7.55e-05	1	CCAATTAAAT
Hoxd9	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	89	+	10.8611	7.55e-05	1	CCAATTAAAT
Tcf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	46	56	-	11.4898	7.55e-05	0.192	GGCAGGTGCCC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.1	22	33	+	8.81967	7.55e-05	0.115	AGACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	22	33	+	8.81967	7.55e-05	0.115	AGACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	22	33	+	8.81967	7.55e-05	0.115	AGACCGGAAGCA
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.2.0	22	33	+	8.81967	7.55e-05	0.115	AGACCGGAAGCA
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	22	33	+	8.81967	7.55e-05	0.115	AGACCGGAAGCA
ELF4	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	45	56	+	8.81967	7.55e-05	0.115	TCGCCGGAAGCG
ELF4	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	70	-	8.81967	7.55e-05	0.115	TCGCCGGAAGCG
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	46	56	-	11.1923	7.55e-05	0.401	GAAATGAGTCT
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	46	56	-	11.1923	7.55e-05	0.401	GAAATGAGTCT
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	46	56	-	11.1923	7.55e-05	0.401	GAAATGAGTCT
BATF::JUN	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	46	56	-	11.1923	7.55e-05	0.401	GAAATGAGTCT
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	46	56	-	11.1923	7.55e-05	0.401	GAAATGAGTCT
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	42	55	-	9.87931	7.55e-05	0.292	AGTGCCCTGGTGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	90	103	-	9.87931	7.55e-05	0.292	GTAGGCAAAGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	90	103	-	9.87931	7.55e-05	0.292	GTAGGCAAAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	22	35	+	9.87931	7.55e-05	0.292	TTCCCCCTGGTGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	22	35	+	9.87931	7.55e-05	0.292	TTCCCCCTGGTGAC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
ELK3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	11.069	7.55e-05	0.124	ACAGGAAGTT
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	58	+	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	69	-	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	69	-	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	69	-	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	69	-	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	69	-	9.58621	7.55e-05	0.0554	TGCCTGGGCGGGA
GLIS1	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	17	32	-	-9.98077	7.55e-05	0.329	CTCCCCCCCGCGCCGG
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	56	68	+	11.0612	7.55e-05	0.508	TGAAGGTCACTCG
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	33	42	-	11.3077	7.55e-05	0.805	CTTGCGAAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	33	42	-	11.3077	7.55e-05	0.805	CTTGCGAAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	33	42	-	11.3077	7.55e-05	0.805	CTTGCGAAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	33	42	-	11.3077	7.55e-05	0.805	CTTGCGAAAC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	33	42	-	11.3077	7.55e-05	0.805	CTTGCGAAAC
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	4	18	+	10.2979	7.55e-05	0.346	GGAAGTGAGGTAAGT
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	38	52	-	10.2979	7.55e-05	0.346	GGAAGTGAGGTAAGT
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	60	70	+	11.2364	7.55e-05	0.147	GGCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	60	70	+	11.2364	7.55e-05	0.147	GGCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	60	70	+	11.2364	7.55e-05	0.147	GGCCGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	60	70	+	11.2364	7.55e-05	0.147	GGCCGGAAGTT
ELF5	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	69	79	+	11.2364	7.55e-05	0.147	GGCCGGAAGTT
ELF5	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	100	110	+	11.2364	7.55e-05	0.147	ACGCGGAAACG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	79	-	11.2364	7.55e-05	0.147	GGCCGGAAGTT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.1.0	19	29	+	11.1552	7.55e-05	0.285	GTCTGTGGGCA
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	19	29	+	11.1552	7.55e-05	0.285	GTCTGTGGGCA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	87	97	+	11.1552	7.55e-05	0.285	TTCTGTGGTGT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	87	97	+	11.1552	7.55e-05	0.285	TTCTGTGGTGT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	87	97	+	11.1552	7.55e-05	0.285	TTCTGTGGTGT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	87	97	+	11.1552	7.55e-05	0.285	TTCTGTGGTGT
JUN	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	75	87	-	10.0408	7.55e-05	0.317	GGACTGATGTAAC
HOXA10	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	57	67	-	10.7736	7.55e-05	1	GACAATAAAAG
HOXA10	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	48	58	+	10.7736	7.55e-05	1	GACAATAAAAG
HOXA10	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	48	58	+	10.7736	7.55e-05	1	GACAATAAAAG
HOXA10	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	48	58	+	10.7736	7.55e-05	1	GACAATAAAAG
HOXA10	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	48	58	+	10.7736	7.55e-05	1	GACAATAAAAG
HES5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.1	57	68	-	2.2069	7.55e-05	0.298	CCGCACGCGTCT
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.1.0	57	68	-	2.2069	7.55e-05	0.298	CCGCACGCGTCT
HES5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:4534827..4534941,-__580.1.0.0	57	68	-	2.2069	7.55e-05	0.298	CCGCACGCGTCT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	27	41	+	7.98361	7.55e-05	0.0708	CGCCCCGCCCCCACG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	63	77	+	7.98361	7.55e-05	0.0708	CGCCCCGCCCCCACG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	+	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	+	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	+	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	+	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	+	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	-	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	-	11.0545	7.55e-05	0.0924	GGCCTGGGGGCG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	90	101	-	11.0545	7.55e-05	0.0924	TGCCTCGAGCCG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	11.1897	7.55e-05	0.113	GCCGGATGTT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	11.1897	7.55e-05	0.113	GCCGGATGTT
KLF14	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	4	17	-	8.5	7.55e-05	0.0373	TCCCACCCCCACCC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	20	40	-	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	20	40	-	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	20	40	-	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	20	40	-	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	32	52	+	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	32	52	+	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	32	52	+	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	32	52	+	4.81633	7.55e-05	0.227	CTCTGTACCAACCACAGCACC
MAF::NFE2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	21	35	-	8.36066	7.56e-05	0.477	ATGACTTATCACTGG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	21	35	-	8.36066	7.56e-05	0.477	ATGACTTATCACTGG
FOXH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.1.0	17	27	-	11.2115	7.56e-05	1	GCCAATACACT
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	20	34	+	-6.11429	7.56e-05	0.998	AAGGTGCAGAGGGCG
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	20	34	+	-6.11429	7.56e-05	0.998	AAGGTGCAGAGGGCG
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	20	34	+	-6.11429	7.56e-05	0.998	AAGGTGCAGAGGGCG
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	2	15	+	10.5303	7.56e-05	0.0658	GGCTCAGAGGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	37	50	-	10.5303	7.56e-05	0.0658	GCCGCCCCGCCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	44	57	-	10.5303	7.56e-05	0.0658	CGCGCCGCCGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	58	71	+	10.5303	7.56e-05	0.0658	CGCGCCGCCGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	66	79	+	10.5303	7.56e-05	0.0658	GCCGCCGCCGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	66	79	-	10.5303	7.56e-05	0.0658	GCCGCCGCCGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	91	104	+	10.5303	7.56e-05	0.0658	GCCGCCGCCGCCTC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	61	74	-	9.53846	7.56e-05	0.529	TCGGAGACGTCACT
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	61	74	-	9.53846	7.56e-05	0.529	TCGGAGACGTCACT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	2	11	-	11.0606	7.56e-05	0.182	TTAGGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	2	11	-	11.0606	7.56e-05	0.182	TTAGGGGTAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	103	112	+	11.0606	7.56e-05	0.182	TTAGGGGTAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	104	113	+	11.0606	7.56e-05	0.182	TTAGGGGTAG
BARHL2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	54	63	+	10.58	7.56e-05	1	ATTAAATGGT
T	WILDTYPE__mrna.noflip.NA__chr14:91976814..91976928,-__1333.1.0.0	47	62	-	7.59615	7.56e-05	1	ACGCACCGTCGTGCGA
Gata4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	57	67	-	11.3793	7.56e-05	1	TCCTATCTCCC
Gata4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	57	67	-	11.3793	7.56e-05	1	TCCTATCTCCC
Gata4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	57	67	-	11.3793	7.56e-05	1	TCCTATCTCCC
SP4	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	9	25	+	3.4	7.56e-05	0.032	CTCTCCCCGCCCCTGAG
SP4	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	90	106	-	3.4	7.56e-05	0.032	CTCTCCCCGCCCCTGAG
GLIS2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	22	+	7.88525	7.56e-05	0.185	TGCCCCCCGCCCCC
GLIS2	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	6	19	-	7.88525	7.56e-05	0.185	TGCCCCCCGCCCCC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	96	109	+	7.88525	7.56e-05	0.185	TGCCCCCCGCCCCC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	110	-	7.88525	7.56e-05	0.185	CACCCACCACGTGG
KLF5	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	3	12	-	10.9796	7.56e-05	0.0249	CTCCCACCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	19	28	-	10.9796	7.56e-05	0.0249	CTCCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	19	28	-	10.9796	7.56e-05	0.0249	CTCCCACCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	34	43	+	10.9796	7.56e-05	0.0249	CTCCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	103	112	+	10.9796	7.56e-05	0.0249	CTCCCACCCT
SP3	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	6	16	+	10.8618	7.56e-05	0.0249	GCCACCCCTCC
SP3	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	27	37	+	10.8618	7.56e-05	0.0249	GCCACCCCTCC
SP3	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	32	42	+	10.8618	7.56e-05	0.0249	GCCACCCCTCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	34	44	+	10.8618	7.56e-05	0.0249	GCCACTCCTCT
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	34	44	+	10.8618	7.56e-05	0.0249	GCCACTCCTCT
SP3	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	71	81	-	10.8618	7.56e-05	0.0249	GCCACTCCTCT
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	99	109	-	10.8618	7.56e-05	0.0249	GCCACCCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	99	109	-	10.8618	7.56e-05	0.0249	GCCACCCCTCC
ZNF143	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	18	33	-	0.982759	7.56e-05	0.415	TTCCCTTAGTACTCTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.3621	7.56e-05	0.126	AGCGGAAGCG
ETV4	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.3621	7.56e-05	0.126	AGCGGAAGCG
FOXC1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	47	57	+	11.28	7.56e-05	1	TATGCAAATAA
FOXC1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	58	68	-	11.28	7.56e-05	1	TATGCAAATAA
FOXC1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	59	69	-	11.28	7.56e-05	1	TATGCAAATAA
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	17	30	+	3.37879	7.56e-05	0.379	GGCCACCCACGAGC
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	17	30	+	3.37879	7.56e-05	0.379	GGCCACCCACGAGC
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	17	30	+	3.37879	7.56e-05	0.379	GGCCACCCACGAGC
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	17	30	+	3.37879	7.56e-05	0.379	GGCCACCCACGAGC
FOS	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	34	44	-	11.2553	7.56e-05	0.261	AGTGAGTCAGG
FOS	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	35	45	-	11.2553	7.56e-05	0.261	AGTGAGTCAGG
FOS	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	70	80	+	11.2553	7.56e-05	0.261	AGTGAGTCAGG
FOS	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	71	81	+	11.2553	7.56e-05	0.261	AGTGAGTCAGG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	10	22	-	7.89394	7.56e-05	0.264	CGGGGATGCCCTC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	10	22	-	7.89394	7.56e-05	0.264	CGGGGATGCCCTC
NFKB2	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	36	48	-	7.89394	7.56e-05	0.264	CGGGGAAACTCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	67	79	+	7.89394	7.56e-05	0.264	CGGGGAAACTCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	67	79	+	7.89394	7.56e-05	0.264	CGGGGAAACTCCG
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	67	79	+	7.89394	7.56e-05	0.264	CGGGGAAACTCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	67	79	+	7.89394	7.56e-05	0.264	CGGGGAAACTCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.0.0	81	93	-	7.89394	7.56e-05	0.264	AGGGGGATCCCTG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:8628425..8628539,+__1787.1.1.0	81	93	-	7.89394	7.56e-05	0.264	AGGGGGATCCCTG
ATF7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	18	31	-	7.2	7.56e-05	0.217	CGATGACCTCACGG
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	18	31	-	7.2	7.56e-05	0.217	CGATGACCTCACGG
ATF7	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	84	97	+	7.2	7.56e-05	0.217	CGATGACCTCACGG
Twist2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	11.623	7.56e-05	1	GGCATATGTT
Twist2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	11.623	7.56e-05	1	GGCATATGTT
TFAP2C	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	47	+	11.0102	7.56e-05	0.0866	CGCCCCCAGCCG
TFAP2C	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	69	80	+	11.0102	7.56e-05	0.0866	CGCCCCCAGCCG
TFAP2C	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	35	46	-	11.0102	7.56e-05	0.0866	CGCCCCCAGCCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	68	79	-	11.0102	7.56e-05	0.0866	CGCCCCCAGCCG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	102	113	-	11.0102	7.56e-05	0.0866	AGCCCCAAGCCG
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	55	68	+	6.5618	7.57e-05	1	AATATCTGGGACAA
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	55	68	+	6.5618	7.57e-05	1	AATATCTGGGACAA
RORA(var.2)	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	47	60	-	6.5618	7.57e-05	1	AATATCTGGGACAA
GCM2	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	1	10	+	11.0328	7.57e-05	0.726	CCTGCGGGTG
GCM2	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	33	42	+	11.0328	7.57e-05	0.726	CCTGCGGGTG
GCM2	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	93	102	+	11.0328	7.57e-05	0.726	CCTGCGGGTG
GCM2	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	73	82	-	11.0328	7.57e-05	0.726	CCTGCGGGTG
GCM2	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	105	114	-	11.0328	7.57e-05	0.726	CCTGCGGGTG
RUNX3	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	81	90	-	11.3462	7.57e-05	0.47	CGACCGCAAG
RUNX3	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	25	34	+	11.3462	7.57e-05	0.47	CGACCGCAAG
HES7	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	29	40	-	2.93103	7.57e-05	0.2	CGGCGCGTGCGC
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	36	47	-	2.93103	7.57e-05	0.2	CGGCGCGTGCGC
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	36	47	-	2.93103	7.57e-05	0.2	CGGCGCGTGCGC
PLAG1	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	14	27	-	5.27551	7.57e-05	0.0744	GGGGCACGGGGGGG
PLAG1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	53	66	-	5.27551	7.57e-05	0.0744	GAGGGCGTGGGGGC
PLAG1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	49	62	+	5.27551	7.57e-05	0.0744	GAGGGCGTGGGGGC
ELF1	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	23	34	-	8.70909	7.57e-05	0.127	ACCCAGGAAGCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	26	46	-	9.40816	7.57e-05	0.021	GAAAAAGGAAAAGGGAAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	34	54	-	9.40816	7.57e-05	0.021	AAGGGCTGAGGTGGGGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	47	67	-	9.40816	7.57e-05	0.021	GAGGGCGGAAGTGATGTGAGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	47	67	-	9.40816	7.57e-05	0.021	GAGGGCGGAAGTGATGTGAGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	47	67	-	9.40816	7.57e-05	0.021	GAGGGCGGAAGTGATGTGAGA
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	47	67	-	9.40816	7.57e-05	0.021	GGGGAAGGGCAGGGAAAAGCC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	48	68	-	9.40816	7.57e-05	0.021	GAAAGAGGAAGTCCAGGGAGC
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	65	85	-	9.40816	7.57e-05	0.021	GAGGCCGGGAGGAGGAGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	68	88	-	9.40816	7.57e-05	0.021	GAAGTAAGGAAAGAGGAAGGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	71	91	-	9.40816	7.57e-05	0.021	AAGGGCTGAGGTGGGGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	71	91	-	9.40816	7.57e-05	0.021	GAGGGCGGAAGTGATGTGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27053495..27053609,+__517.1.0.0	14	34	+	9.40816	7.57e-05	0.021	CGGGGAGGAGTTTGAGATGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	24	44	+	9.40816	7.57e-05	0.021	AAGGGCTGAGGTGGGGGGGCG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	30	50	+	9.40816	7.57e-05	0.021	GAGGCCGGGAGGAGGAGGCGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	37	57	+	9.40816	7.57e-05	0.021	CGGGGAGGAGTTTGAGATGGG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	48	68	+	9.40816	7.57e-05	0.021	GGGGAAGGGCAGGGAAAAGCC
ZNF263	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	61	81	+	9.40816	7.57e-05	0.021	AAGGGCTGAGGTGGGGGGGCG
EGR3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	23	37	-	6.01724	7.57e-05	0.0417	CCACCCCTCCGCCTC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	64	78	+	6.01724	7.57e-05	0.0417	CCCCGCCTCGGCAGC
EGR3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	78	92	+	6.01724	7.57e-05	0.0417	CCACCCCTCCGCCTC
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	26	36	+	10.6034	7.57e-05	0.0509	ACGCGCGAGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	20	30	-	10.6034	7.57e-05	0.0509	ACGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	89	99	-	10.6034	7.57e-05	0.0509	GGGCGCGAGTG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	89	99	-	10.6034	7.57e-05	0.0509	GGGCGCGAGTG
CUX2	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	44	53	+	11.3469	7.57e-05	1	TAATCAATGA
Vdr	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	30	45	+	3.63934	7.57e-05	0.833	CGGGACGCAGGGGTCA
Vdr	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	70	85	-	3.63934	7.57e-05	0.833	CGGGACGCAGGGGTCA
Vdr	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	70	85	-	3.63934	7.57e-05	0.833	CGGGACGCAGGGGTCA
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	14	24	+	10.8367	7.57e-05	0.227	CAGTGATTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	14	24	+	10.8367	7.57e-05	0.227	CAGTGATTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	13	23	-	10.8367	7.57e-05	0.227	CAGTGATTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	13	23	-	10.8367	7.57e-05	0.227	CAGTGATTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	95	105	-	10.8367	7.57e-05	0.227	TGCTGACTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	95	105	-	10.8367	7.57e-05	0.227	TGCTGACTCAC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	17	-	11.7755	7.57e-05	0.422	TCCACCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	17	-	11.7755	7.57e-05	0.422	TCCACCTGCC
ARNT::HIF1A	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	30	37	+	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	42	49	+	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	42	49	+	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	77	84	-	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	77	84	-	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	102	109	+	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	103	110	+	11.2237	7.58e-05	0.388	CTACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	103	110	+	11.2237	7.58e-05	0.388	CTACGTGC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	2	16	-	10.1552	7.58e-05	0.0162	CCGCCGCCCCCTCCC
SP2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	24	38	+	10.1552	7.58e-05	0.0162	CTTCCGCCCCAGTCT
SP2	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	23	37	-	10.1552	7.58e-05	0.0162	GCACCTCCCCCAAGC
SP2	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	50	64	+	10.1552	7.58e-05	0.0162	GCTCCGCCCACAGAA
SP2	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	39	53	-	10.1552	7.58e-05	0.0162	CCCCCTCCTACCAGG
SP2	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	62	76	+	10.1552	7.58e-05	0.0162	CCCCCTCCTACCAGG
SP2	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	51	65	-	10.1552	7.58e-05	0.0162	GCTCCGCCCACAGAA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	43	53	+	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	60	70	+	10.8182	7.58e-05	0.0714	AGCCGCAGGGT
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	102	112	+	10.8182	7.58e-05	0.0714	AGCCGCAGGGT
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	3	13	-	10.8182	7.58e-05	0.0714	AGCCGCAGGGT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	23	-	10.8182	7.58e-05	0.0714	CCCCCCGGGCA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	39	49	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	45	55	-	10.8182	7.58e-05	0.0714	AGCCGCAGGGT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	62	72	-	10.8182	7.58e-05	0.0714	TGCCCGCGGCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	27	38	-	10.4848	7.58e-05	0.109	CCGCCTCCGCAC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	27	38	-	10.4848	7.58e-05	0.109	CCGCCTCCGCAC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	27	38	-	10.4848	7.58e-05	0.109	CCGCCTCCGCAC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	27	38	-	10.4848	7.58e-05	0.109	CCGCCTCCGCAC
HINFP	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	77	88	+	10.4848	7.58e-05	0.109	CCGCCTCCGCAC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	+	10.0656	7.58e-05	0.0589	CCCCCCGCAGGGA
SRF	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	31	46	+	4.80328	7.58e-05	1	GGACTAAATAAGGGAG
SRF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	69	84	-	4.80328	7.58e-05	1	GGACTAAATAAGGGAG
SRF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	69	84	-	4.80328	7.58e-05	1	GGACTAAATAAGGGAG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	62	76	+	10.6667	7.58e-05	0.188	GCGGGGCAAGAGGCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	62	76	+	10.6667	7.58e-05	0.188	GCGGGGCAAGAGGCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	55	69	-	10.6667	7.58e-05	0.188	GCGGAGGATAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	55	69	-	10.6667	7.58e-05	0.188	GCGGAGGATAGGGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	55	69	-	10.6667	7.58e-05	0.188	GCGGAGGATAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	55	69	-	10.6667	7.58e-05	0.188	GCGGAGGATAGGGCA
mix-a	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	7	17	+	11.7619	7.58e-05	1	GTCTAATTAGG
SCRT2	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	57	69	+	6.39344	7.58e-05	1	AGGCTACAGGTGT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	+	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	+	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	-	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	-	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	+	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	-	11.0909	7.58e-05	0.0579	CGCCTCTGGGCG
ETV1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	88	97	+	11.2545	7.58e-05	0.118	GGCGGAAGTA
ETV1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	93	102	+	11.2545	7.58e-05	0.118	GGCGGAAGTA
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	18	27	-	11.2545	7.58e-05	0.118	GGCGGAAGTA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	18	27	-	11.2545	7.58e-05	0.118	GGCGGAAGTA
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	84	94	+	11.0517	7.58e-05	0.597	GAATCACAGTA
IRF8	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	15	28	-	-3.03636	7.58e-05	0.771	CAGAAAAAGAAAGC
IRF8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	67	80	-	-3.03636	7.58e-05	0.771	CAGAAAAAGAAAGC
IRF8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	67	80	-	-3.03636	7.58e-05	0.771	CAGAAAAAGAAAGC
Neurog1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	57	+	10.2198	7.58e-05	1	ACCATCTGTT
Neurog1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	57	+	10.2198	7.58e-05	1	ACCATCTGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	20	29	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	20	29	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	20	29	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	20	29	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	26	35	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	34	43	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	36	45	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	36	45	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	48	57	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	58	67	+	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	53	62	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	70	79	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	72	81	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	80	89	-	10.9574	7.58e-05	0.125	ACAGGAAGTT
EBF1	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	97	110	+	8.83607	7.58e-05	0.365	CTCCTCCAGGGACT
HOXB2	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	9.75472	7.59e-05	1	GCCAATTAGC
SRY	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	58	66	+	10.7333	7.59e-05	1	CTTAACAAT
SRY	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	84	92	+	10.7333	7.59e-05	1	CTTAACAAT
HSF4	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	30	42	-	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	23	35	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	23	35	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	73	85	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	73	85	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	73	85	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
HSF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	73	85	+	10.5366	7.59e-05	1	TGCCAGCAGCTTC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.3.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.6.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.7.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.5.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.4.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.0.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.1.0	13	22	-	12.1346	7.59e-05	0.404	CCCACCTGTT
TCF3	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	49	58	-	12.1346	7.59e-05	0.404	CCCACCTGTT
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	31	-	11.1639	7.59e-05	0.389	CCCACCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	31	-	11.1639	7.59e-05	0.389	CCCACCTGTC
ID4	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	44	-	11.1639	7.59e-05	0.389	CCCACCTGCC
ID4	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	75	-	11.1639	7.59e-05	0.389	CCCACCTGTC
ID4	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	9	18	+	11.1639	7.59e-05	0.389	CCCACCTGCC
ID4	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	40	49	+	11.1639	7.59e-05	0.389	CCCACCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	69	78	+	11.1639	7.59e-05	0.389	CCCACCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	69	78	+	11.1639	7.59e-05	0.389	CCCACCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	71	80	+	11.1639	7.59e-05	0.389	CCCACCTGCC
Gabpa	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	27	37	-	10.6557	7.59e-05	0.0718	CAGGAAGTGTC
Gabpa	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	78	88	+	10.6557	7.59e-05	0.0718	CAGGAAGTGTC
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	19	32	+	9.45714	7.59e-05	0.28	AAGCCACGTCCCCC
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	19	32	+	9.45714	7.59e-05	0.28	AAGCCACGTCCCCC
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	19	32	+	9.45714	7.59e-05	0.28	AAGCCACGTCCCCC
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	19	32	+	9.45714	7.59e-05	0.28	AAGCCACGTCCCCC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	32	+	9.70492	7.59e-05	0.0644	CGCCTTCCCGGCA
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	48	60	+	9.70492	7.59e-05	0.0644	CGCCTCCCGGGGT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	83	95	-	9.70492	7.59e-05	0.0644	CGCCTTCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	83	95	-	9.70492	7.59e-05	0.0644	CGCCTTCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	83	95	-	9.70492	7.59e-05	0.0644	CGCCTTCCCGGCA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	83	95	-	9.70492	7.59e-05	0.0644	CGCCTTCCCGGCA
TFE3	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	+	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	+	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	-	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	+	11.0204	7.59e-05	0.152	ATCATGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	+	11.0204	7.59e-05	0.152	ATCATGTGAC
RFX3	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	+	9	7.59e-05	0.391	CGTTGCCAGGATACCG
RFX3	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	-	9	7.59e-05	0.391	CGTTGCCAGGATACCG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	27	41	-	9.1	7.59e-05	0.122	CGAGGGCGGGGGCTG
CTCF	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	3	21	+	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	22	40	-	8.42623	7.59e-05	0.127	CTTCCAGTAGCCGGCGGCG
CTCF	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	40	58	-	8.42623	7.59e-05	0.127	CGAGCAGATGGTGGCGGGG
CTCF	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	75	93	+	8.42623	7.59e-05	0.127	CTTCCAGTAGCCGGCGGCG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	62	80	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	62	80	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	62	80	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	62	80	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	74	92	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	74	92	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	94	112	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	94	112	-	8.42623	7.59e-05	0.127	TGGCCGCCCGGGTGCGCCT
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.1.0	72	90	-	10.3226	7.59e-05	0.15	TAGAGCACAAGACCGTGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.0.0	72	90	-	10.3226	7.59e-05	0.15	TAGAGCACAAGACCGTGAC
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr6:107235351..107235465,-__727.1.0.0	76	91	-	0.965517	7.59e-05	0.415	TAACCATGTTGCACAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	8	25	+	-15.1974	7.59e-05	0.0539	GAGGGGAGGGGAGAAGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	26	43	+	-15.1974	7.59e-05	0.0539	GGAAAAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	26	43	+	-15.1974	7.59e-05	0.0539	GGAAAAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	26	43	+	-15.1974	7.59e-05	0.0539	GGAAAAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	26	43	+	-15.1974	7.59e-05	0.0539	GGAAAAGGAGGAGGAGGC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	89	106	+	-15.1974	7.59e-05	0.0539	TGAAGAAGCGGAGCCAGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	9	26	-	-15.1974	7.59e-05	0.0539	TGAAGAAGCGGAGCCAGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	72	89	-	-15.1974	7.59e-05	0.0539	GGAAAAGGAGGAGGAGGC
RXRG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	38	51	+	1.31915	7.59e-05	0.48	GAGGGGAAAGGTAA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	38	51	+	1.31915	7.59e-05	0.48	GAGGGGAAAGGTAA
RXRG	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	62	75	-	1.31915	7.59e-05	0.48	AGGTTGAAATTTCA
RXRG	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	64	77	-	1.31915	7.59e-05	0.48	GAGGGGAAAGGTAA
FIGLA	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	61	70	-	11.4655	7.59e-05	0.859	GACACCTGTA
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	80	91	+	10.2931	7.59e-05	0.365	GGGCCCACCCAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	4	20	+	3.38182	7.6e-05	0.0321	CTAGCCCCCGCCCCTGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	4	20	+	3.38182	7.6e-05	0.0321	CTAGCCCCCGCCCCTGC
SP4	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	32	48	-	3.38182	7.6e-05	0.0321	AGGGCCACCCCCCATAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	65	81	+	3.38182	7.6e-05	0.0321	CCTGCCACGCCCTGTGC
SP4	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	67	83	+	3.38182	7.6e-05	0.0321	AGGGCCACCCCCCATAC
Creb5	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	23	34	+	8.41818	7.6e-05	0.247	GATGACGTCTCC
Creb5	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	81	92	-	8.41818	7.6e-05	0.247	GATGACGTCTCC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	78	88	+	10.1837	7.6e-05	0.343	GCACACGTGGA
MAX::MYC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	78	88	+	10.1837	7.6e-05	0.343	GCACACGTGGA
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	55	65	-	11.0818	7.6e-05	0.77	AGGGGAGCGGC
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	55	65	-	11.0818	7.6e-05	0.77	AGGGGAGCGGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	55	65	-	11.0818	7.6e-05	0.77	AGGGGAGCGGC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	46	56	+	11.1273	7.6e-05	0.0552	CGCCCCACGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	70	80	+	11.1273	7.6e-05	0.0552	GGCCGGAGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	70	80	+	11.1273	7.6e-05	0.0552	GGCCGGAGGCA
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	103	113	+	11.1273	7.6e-05	0.0552	AGCCTCGAGCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	26	36	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	26	36	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	26	36	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	83	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	75	85	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	75	85	+	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	13	23	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	13	23	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	26	36	-	10.8537	7.6e-05	0.0249	CACCCGCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	28	38	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	28	38	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	30	40	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	38	48	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	71	81	-	10.8537	7.6e-05	0.0249	CTCACGCCTCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	101	111	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	101	111	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	101	111	-	10.8537	7.6e-05	0.0249	CCTCCGCCCAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	16	28	-	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	16	28	-	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	31	43	+	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	31	43	+	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	36	48	-	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	36	48	-	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
JUN	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	87	99	+	10.0204	7.6e-05	0.317	CTTGTGACGTCAC
NKX3-2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	78	86	-	11.5	7.6e-05	1	GACACTTAA
NKX3-2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	78	86	-	11.5	7.6e-05	1	GACACTTAA
Hes2	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	17	29	+	10.6032	7.6e-05	0.577	CTCGGGAACGTGA
IRF2	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	26	43	+	4.70642	7.6e-05	0.626	AGGAAGTGAAACGAGTTC
IRF2	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	72	89	-	4.70642	7.6e-05	0.626	AGGAAGTGAAACGAGTTC
Klf12	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	46	60	+	7.96721	7.6e-05	0.0708	CGCCCCGCCCCCAGA
Klf12	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	55	69	-	7.96721	7.6e-05	0.0708	CGCCCCGCCCCCAGA
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	14	25	+	8.80328	7.6e-05	0.115	TTCCCGGGAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	41	52	+	8.69091	7.6e-05	0.127	CCACCGGAAGCA
ELF1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	64	75	+	8.69091	7.6e-05	0.127	CCACCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	63	74	-	8.69091	7.6e-05	0.127	CCACCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	63	74	-	8.69091	7.6e-05	0.127	CCACCGGAAGCA
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	4	18	+	10.0455	7.6e-05	0.121	ATCTCGCGGAAGCCG
MAFF	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	40	57	+	10.6667	7.6e-05	0.965	GCAGGCTCAGCATGCATG
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	6	23	-	10.6667	7.6e-05	0.965	GGCGCGTCAGCAGTAAAC
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	6	23	-	10.6667	7.6e-05	0.965	GGCGCGTCAGCAGTAAAC
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	6	23	-	10.6667	7.6e-05	0.965	GGCGCGTCAGCAGTAAAC
MAFF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	6	23	-	10.6667	7.6e-05	0.965	GGCGCGTCAGCAGTAAAC
MAFF	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	83	100	-	10.6667	7.6e-05	0.965	GCAGGCTCAGCATGCATG
GLIS1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	24	39	+	-10.0192	7.6e-05	0.329	TGGCCGACCGCGTAGG
TFEC	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	11.2317	7.6e-05	0.192	GGCACGTGGT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	60	74	-	10.1273	7.6e-05	0.109	CGCCCCCTGCTTTGG
KLF14	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	29	42	-	8.48276	7.6e-05	0.0374	CGCCACGCCTTCCA
KLF14	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	92	105	-	8.48276	7.6e-05	0.0374	GGCCCCGCCGCTCT
RELA	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	33	42	-	9.44898	7.6e-05	0.241	TTGGGTTTCC
RELA	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	73	82	+	9.44898	7.6e-05	0.241	TTGGGTTTCC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	19	32	-	7.86885	7.6e-05	0.185	CAGCCCCCGCCACG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	19	32	-	7.86885	7.6e-05	0.185	CAGCCCCCGCCACG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	19	32	-	7.86885	7.6e-05	0.185	CAGCCCCCGCCACG
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	74	88	-	9.93103	7.6e-05	0.504	CATTTCAAGGACGTG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	26	39	+	10.9423	7.61e-05	0.223	TAGCAATGACTAAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	26	39	+	10.9423	7.61e-05	0.223	TAGCAATGACTAAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	87	100	-	10.9423	7.61e-05	0.223	TAGCAATGACTAAT
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	87	100	-	10.9423	7.61e-05	0.223	TAGCAATGACTAAT
RREB1	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	38	57	-	3.33028	7.61e-05	0.0688	CCTCTCCCCACCCCCGCCCC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	39	48	-	9.7931	7.61e-05	0.249	ATCAGCTGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	67	76	+	9.7931	7.61e-05	0.249	ATCAGCTGAC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	19	29	-	10.2909	7.61e-05	0.237	TCTGACTCACA
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	24	37	+	10.5152	7.61e-05	0.0658	CCCGCCCCGCCCTC
Zfx	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	36	49	-	10.5152	7.61e-05	0.0658	CCCGCCGCCGCCTC
Zfx	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	66	79	+	10.5152	7.61e-05	0.0658	CCCGCCGCCGCCTC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	41	50	+	10.4898	7.61e-05	0.0264	TGGGTGGAGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	41	50	+	10.4898	7.61e-05	0.0264	TGGGTGGAGT
E2F4	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	6	16	+	10.5862	7.61e-05	0.0509	GGGCGGCAGGC
E2F4	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	12	22	-	10.5862	7.61e-05	0.0509	AGGCGGGGAGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	27	37	+	10.5862	7.61e-05	0.0509	AGGCGGGGAGA
E2F4	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	52	62	+	10.5862	7.61e-05	0.0509	AGGCGGGGAGA
E2F4	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	53	63	-	10.5862	7.61e-05	0.0509	AGGCGGGGAGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	87	97	+	10.5862	7.61e-05	0.0509	GAGCGCGAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	87	97	+	10.5862	7.61e-05	0.0509	GAGCGCGAAGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	87	97	+	10.5862	7.61e-05	0.0509	GAGCGCGAAGC
E2F4	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	93	103	+	10.5862	7.61e-05	0.0509	AGGCGGGGAGA
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	99	109	-	10.5862	7.61e-05	0.0509	GGGCGGCAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	99	109	-	10.5862	7.61e-05	0.0509	GGGCGGCAGGC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	10.9437	7.61e-05	0.167	ACCGGAAGGC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	10.9437	7.61e-05	0.167	ACCGGAAGGC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	10.9437	7.61e-05	0.167	ACCGGAAGGC
ATF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	73	86	+	7.18571	7.61e-05	0.217	TGATGACGCCACGA
ATF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	73	86	+	7.18571	7.61e-05	0.217	TGATGACGCCACGA
IRF8	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	45	58	+	-3.05455	7.61e-05	0.771	AAGATACCGGAAGT
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	5	14	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	5	14	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	5	14	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	5	14	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	5	14	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	40	49	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	40	49	-	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	57	66	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	57	66	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	57	66	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	57	66	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	57	66	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
REL	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	101	110	+	10.9899	7.61e-05	0.334	GGGAAGTTCC
Myod1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	64	76	-	11.4898	7.61e-05	0.184	AACAGCTGCTTGG
SPDEF	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	74	84	+	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	31	41	-	10.0182	7.61e-05	0.269	CCCCGGATCTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	80	90	-	10.0182	7.61e-05	0.269	ATCCGGATGCC
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	80	90	-	10.0182	7.61e-05	0.269	ATCCGGATGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	14	28	+	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	14	28	+	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	14	28	+	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	14	28	+	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.0.0	4	18	-	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	4	18	-	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	15	29	-	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	25	39	-	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	46	60	-	6	7.61e-05	0.0417	CCCCGCTCCCACAAG
EGR3	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	86	100	+	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	75	89	-	6	7.61e-05	0.0417	GCCCGGCCCCGCCCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	55	68	+	10.0192	7.61e-05	0.0273	GCGACGCCCTCACC
EGR1	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	47	60	-	10.0192	7.61e-05	0.0273	GCGACGCCCTCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	68	81	-	10.0192	7.61e-05	0.0273	CTGACGCCTCCTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	68	81	-	10.0192	7.61e-05	0.0273	CTGACGCCTCCTCT
EGR1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	95	108	+	10.0192	7.61e-05	0.0273	TGCACGCCCACTGC
BCL6B	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	72	88	-	-17.1714	7.61e-05	1	TGGTTTCCTGGAGTTGA
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	16	30	+	10.2766	7.61e-05	0.346	GGCGCTGAGGTCATC
JUND(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	52	66	+	10.2766	7.61e-05	0.346	GGCGCTGAGGTCATC
XBP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	69	82	+	9.51923	7.61e-05	0.529	TCGGCGACGTCACA
XBP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	69	82	+	9.51923	7.61e-05	0.529	TCGGCGACGTCACA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	55	65	+	10.8	7.61e-05	0.0714	AGCCCAGGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	55	65	+	10.8	7.61e-05	0.0714	AGCCCAGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	69	79	+	10.8	7.61e-05	0.0714	AGCCCAGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	65	75	-	10.8	7.61e-05	0.0714	AGCCCAGGGCT
ZIC1	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	59	72	-	5.97872	7.61e-05	0.102	TGCACCCTCCTGCG
ZIC3	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	53	67	+	7.8	7.61e-05	0.119	CCCTCCCTGCTGGTT
HES7	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	78	89	-	2.89655	7.61e-05	0.2	CGGCGCGCGCCT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	26	37	+	2.89655	7.61e-05	0.2	CGGCGCGCGCCT
HES7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	26	37	+	2.89655	7.61e-05	0.2	CGGCGCGCGCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	16	27	+	10.6316	7.61e-05	0.0353	ACCCCTCCCAGC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	16	27	+	10.6316	7.61e-05	0.0353	ACCCCTCCCAGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	22	33	+	10.6316	7.61e-05	0.0353	TCCCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	22	33	+	10.6316	7.61e-05	0.0353	TCCCCGCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	22	33	+	10.6316	7.61e-05	0.0353	TCCCCGCCCAGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	22	33	+	10.6316	7.61e-05	0.0353	TCCCCGCCCAGC
SP8	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	82	93	-	10.6316	7.61e-05	0.0353	TCCCCGCCCAGC
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	95	104	-	10.6633	7.61e-05	0.274	CGTCATGTGG
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	95	104	-	10.6633	7.61e-05	0.274	CGTCATGTGG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	5	14	-	10.8	7.61e-05	0.115	ATCGGAACTG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	5	14	-	10.8	7.61e-05	0.115	ATCGGAACTG
HOXA13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	48	57	+	11.25	7.62e-05	1	CTTATAAAAA
HOXA13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	48	57	+	11.25	7.62e-05	1	CTTATAAAAA
HOXA13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	48	57	+	11.25	7.62e-05	1	CTTATAAAAA
LEF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	38	52	+	8.37097	7.62e-05	1	AAAGACCAAGGGATA
LEF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	38	52	+	8.37097	7.62e-05	1	AAAGACCAAGGGATA
LEF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	38	52	+	8.37097	7.62e-05	1	AAAGACCAAGGGATA
LEF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	38	52	+	8.37097	7.62e-05	1	AAAGACCAAGGGATA
KLF13	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	27	44	+	4.22414	7.62e-05	0.327	CGGCCACACCCCCGGGGA
HES5	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	5	16	-	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HES5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	18	29	-	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	18	29	-	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	60	71	+	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	60	71	+	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HES5	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	99	110	+	2.17241	7.62e-05	0.298	CGGCGCGCGCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	10	21	+	10.4697	7.62e-05	0.109	CTGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	10	21	+	10.4697	7.62e-05	0.109	CTGCGTGCGCGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	17	28	-	10.4697	7.62e-05	0.109	CTGCGTGCGCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	76	87	+	10.4697	7.62e-05	0.109	CCGCGTCCTCCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	92	103	+	10.4697	7.62e-05	0.109	CCGCGTCCTCCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	-	9.68852	7.62e-05	0.0644	CGCCGCTCGGGCT
OLIG3	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	33	42	+	11.2586	7.62e-05	1	AACATATTTT
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	2	19	+	8.86585	7.62e-05	0.208	GTGGCGTTCATTGGCTGT
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	2	19	+	8.86585	7.62e-05	0.208	GTGGCGTTCATTGGCTGT
NFYA	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	96	113	-	8.86585	7.62e-05	0.208	GTGGCGTTCATTGGCTGT
PLAG1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	34	47	-	5.2551	7.62e-05	0.0744	GGCGGCAACAGGGA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	68	81	+	5.2551	7.62e-05	0.0744	GGCGGCAACAGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	68	81	+	5.2551	7.62e-05	0.0744	GGCGGCAACAGGGA
ELF3	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	84	96	-	7.94828	7.62e-05	0.177	ATCAAGGAAGTTG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	7	22	+	10.0364	7.62e-05	0.0401	CCCCCCCCCCCCCAGT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	16	31	+	10.0364	7.62e-05	0.0401	TACCGCCTACGTAAAT
EGR4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	25	40	+	10.0364	7.62e-05	0.0401	CCCCGCCCGCCCCGCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	24	39	-	10.0364	7.62e-05	0.0401	CTCCGCCCCCTCCCGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	50	65	-	10.0364	7.62e-05	0.0401	TACCGCCTACGTAAAT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	50	65	-	10.0364	7.62e-05	0.0401	CCCCGGCCCCGCCCCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	50	65	-	10.0364	7.62e-05	0.0401	CCCCGGCCCCGCCCCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	50	65	-	10.0364	7.62e-05	0.0401	CCCCGGCCCCGCCCCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	50	65	-	10.0364	7.62e-05	0.0401	CCCCGGCCCCGCCCCT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	76	91	+	10.0364	7.62e-05	0.0401	CTCCGCCCCCTCCCGC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	56	76	+	8.66129	7.62e-05	0.187	AGGGGTTTCCGCTTTCGGTTC
IRF1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	42	62	-	8.66129	7.62e-05	0.187	TTCCCCTTTCTCTTACTCGCT
IRF2	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	37	54	+	4.69725	7.62e-05	0.626	GGCAAGAGAAAGCTGAAT
TFEB	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	32	41	-	11.0577	7.62e-05	0.178	GGCATGTGAC
MNT	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	11.9697	7.62e-05	0.338	GACACGTGGT
MNT	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	11.9697	7.62e-05	0.338	GACACGTGGT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	11.9697	7.62e-05	0.338	GGCACGTGTT
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	11.9697	7.62e-05	0.338	GGCACGTGTT
PAX1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	4	20	+	5.16364	7.63e-05	0.619	AGTCATGCTGGACCGGA
PAX1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	95	111	-	5.16364	7.63e-05	0.619	AGTCATGCTGGACCGGA
E2F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	1	18	-	2.50909	7.63e-05	1	CGAAGGGGCCCCTTATCC
E2F3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	1	18	-	2.50909	7.63e-05	1	CGAAGGGGCCCCTTATCC
E2F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	1	18	-	2.50909	7.63e-05	1	CGAAGGGGCCCCTTATCC
E2F3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	1	18	-	2.50909	7.63e-05	1	CGAAGGGGCCCCTTATCC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	41	53	-	1.71429	7.63e-05	0.253	CGGGGCATCCCTC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	78	90	-	1.71429	7.63e-05	0.253	TGGGGAAATCCCA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	25	37	+	1.71429	7.63e-05	0.253	TGGGGAAATCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	86	98	+	1.71429	7.63e-05	0.253	CGGGGCATCCCTC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	86	98	+	1.71429	7.63e-05	0.253	CGGGGCATCCCTC
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	86	98	+	1.71429	7.63e-05	0.253	CGGGGCATCCCTC
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	86	98	+	1.71429	7.63e-05	0.253	CGGGGCATCCCTC
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	15	23	+	11.0796	7.63e-05	1	TATGCAAAG
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	81	89	+	11.0796	7.63e-05	1	TATGCAAAG
RARA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	69	86	-	-10.1061	7.63e-05	1	AGGGACTGAAGGTCAGTG
RARA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	69	86	-	-10.1061	7.63e-05	1	AGGGACTGAAGGTCAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	59	68	+	11.1154	7.63e-05	0.115	AGCGGAAATT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	59	68	+	11.1154	7.63e-05	0.115	AGCGGAAATT
Ar	WILDTYPE__Antisense.noflip.NA__chr4:8068159..8068273,+__648.1.0.0	22	38	+	6.25862	7.63e-05	0.882	CTGTACATGATGTTCAC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	73	90	-	-15.2237	7.63e-05	0.054	GGAAGGGAGTCGGAAAGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	40	52	+	9.55172	7.63e-05	0.0556	AGCCTCTGAGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	40	52	+	9.55172	7.63e-05	0.0556	AGCCTCTGAGGGA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	48	60	+	9.55172	7.63e-05	0.0556	TCCCTCCCAGGCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	61	73	-	9.55172	7.63e-05	0.0556	GCCCCCAAAGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	98	110	-	9.55172	7.63e-05	0.0556	TCCCTCCCAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	39	51	+	10.0492	7.63e-05	0.0589	CGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	39	51	+	10.0492	7.63e-05	0.0589	CGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	52	64	-	10.0492	7.63e-05	0.0589	CGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	52	64	-	10.0492	7.63e-05	0.0589	CGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	52	64	-	10.0492	7.63e-05	0.0589	CGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	97	109	-	10.0492	7.63e-05	0.0589	TGCCGCAGAGGCG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	6	15	+	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	37	46	+	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	37	46	+	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	37	46	+	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	37	46	+	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	59	68	+	10.6379	7.63e-05	0.14	GGCAGCTGTT
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	66	75	-	10.6379	7.63e-05	0.14	GGCAGCTGTT
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	86	95	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	86	95	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	86	95	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	86	95	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	100	109	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	100	109	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	103	112	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	103	112	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	103	112	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	103	112	-	10.6379	7.63e-05	0.14	CTCAGCTGCA
Pou5f1::Sox2	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	36	50	-	10.2339	7.63e-05	1	AAGTGAAATGCAAAT
EHF	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	52	63	+	10	7.63e-05	0.137	CCCCCGGAAGCG
EHF	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	63	-	10	7.63e-05	0.137	CCCCCGGAAGCG
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	25	33	-	11.4944	7.63e-05	0.29	TACACGTGA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	55	63	-	11.4944	7.63e-05	0.29	TACACGTGA
KLF16	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	21	+	10.2759	7.63e-05	0.024	ACCCCTCCCAT
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	49	59	+	10.2759	7.63e-05	0.024	ACCACTCCCTC
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	10	26	-	3.36364	7.63e-05	0.0322	CTGGCTCCGCCCTAAAG
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	33	47	-	9.08571	7.63e-05	0.122	GCGGGGCGGAGAGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	33	47	-	9.08571	7.63e-05	0.122	GCGGGGCGGAGAGCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	52	66	-	9.08571	7.63e-05	0.122	GCGGGGCGGAGAGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	68	82	+	9.08571	7.63e-05	0.122	GCGGGGCGGAGAGCG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	79	93	-	9.08571	7.63e-05	0.122	CGGCGTCAGGAGGCA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	37	47	-	10.9615	7.63e-05	0.0758	ACCCTGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	40	50	-	10.9615	7.63e-05	0.0758	ACCCTGAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	40	50	-	10.9615	7.63e-05	0.0758	ACCCTGAGGCC
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	68	78	+	10.9615	7.63e-05	0.0758	ACCCTGAGGCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	10	20	+	10.5455	7.63e-05	0.0535	TACCCCTCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	10	20	-	9.72727	7.63e-05	0.0222	GCGTCTGTGCG
NRF1	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	95	105	+	9.72727	7.63e-05	0.0222	GCGTCTGTGCG
SP2	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	57	71	+	10.1379	7.64e-05	0.0163	CGTCCTCCCCACCCC
SP2	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	57	71	+	10.1379	7.64e-05	0.0163	CCCCTGCCCCATCCT
SP2	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	44	58	-	10.1379	7.64e-05	0.0163	CCCCTGCCCCATCCT
SP2	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	74	88	-	10.1379	7.64e-05	0.0163	CGCCCGCCCAGCGTC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	97	111	-	10.1379	7.64e-05	0.0163	CTCCTGCCTCCTCAG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	97	111	-	10.1379	7.64e-05	0.0163	CTCCTGCCTCCTCAG
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	6	17	+	8.70968	7.64e-05	1	AATAAATATAGA
TGIF1	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	63	74	-	-0.192308	7.64e-05	0.932	TGACAGGAGACA
MLX	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	-	9.85714	7.64e-05	0.326	CTCACGTGGT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	27	38	+	11.0364	7.64e-05	0.0924	GCCCCGAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	27	38	+	11.0364	7.64e-05	0.0924	GCCCCGAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	27	38	+	11.0364	7.64e-05	0.0924	GCCCCGAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	27	38	+	11.0364	7.64e-05	0.0924	GCCCCGAGGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	27	38	+	11.0364	7.64e-05	0.0924	GCCCCGAGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	63	74	+	11.0364	7.64e-05	0.0924	CGCCGTCGGGCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	67	78	+	11.0364	7.64e-05	0.0924	TCCCCCAAGCCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	37	48	-	11.0364	7.64e-05	0.0924	TCCCCCAAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	41	52	-	11.0364	7.64e-05	0.0924	CGCCGTCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	41	52	-	11.0364	7.64e-05	0.0924	CGCCGTCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	+	11	7.64e-05	0.0866	CGCCCGCAGGGG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	+	11	7.64e-05	0.0866	CGCCCGCAGGGG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	47	58	+	11	7.64e-05	0.0866	TCCCCAAGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	47	58	+	11	7.64e-05	0.0866	TCCCCAAGGGGA
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	58	69	+	11	7.64e-05	0.0866	TGGCTCAGGGCT
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	96	107	+	11	7.64e-05	0.0866	AGCCCAGAGGCT
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	16	27	-	11	7.64e-05	0.0866	TGCCGCGGGCCA
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	46	57	-	11	7.64e-05	0.0866	TGGCTCAGGGCT
USF1	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	2	12	-	10.7755	7.64e-05	0.22	ACCATGTGATG
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	43	53	-	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	43	53	-	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	56	66	-	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	56	66	-	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	66	76	-	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	19	29	+	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	19	29	+	10.7755	7.64e-05	0.22	GTCATGTGGTC
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	39	49	+	10.7755	7.64e-05	0.22	CGCAGGTGACT
USF1	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	103	113	+	10.7755	7.64e-05	0.22	ACCATGTGATG
TBX19	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	83	102	-	8.96341	7.64e-05	1	TGTCACAGAGTCATGTGAGA
TBX19	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	83	102	-	8.96341	7.64e-05	1	TGTCACAGAGTCATGTGAGA
RFX3	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	+	8.98485	7.64e-05	0.391	CGGTATCCTGGCAACG
RFX3	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	-	8.98485	7.64e-05	0.391	CGGTATCCTGGCAACG
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	3	18	+	3.60656	7.64e-05	0.833	AGGTGCTCCCGGGTCA
IRF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	5	22	+	4.68807	7.64e-05	0.626	GAGAAATGAAACTAAGGA
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	65	75	+	11.2182	7.64e-05	0.147	TGACGGAAGTG
ELF5	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	50	-	11.2182	7.64e-05	0.147	TGACGGAAGTG
Hes1	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	100	109	+	9.88811	7.64e-05	0.12	TGCACGCGTG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	9	22	-	7.17143	7.65e-05	0.217	TTGTGACGTCGCAG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	9	22	-	7.17143	7.65e-05	0.217	TTGTGACGTCGCAG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	57	70	+	7.17143	7.65e-05	0.217	TTGTGACGTCGCAG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	57	70	+	7.17143	7.65e-05	0.217	TTGTGACGTCGCAG
FOS	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	+	11.234	7.65e-05	0.261	ACTGAGTCAGC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	-	11.234	7.65e-05	0.261	ACTGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	-	11.234	7.65e-05	0.261	ACTGAGTCAGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	17	34	+	-15.2368	7.65e-05	0.054	GGTGGGAGGAGAGGAGGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	22	39	+	-15.2368	7.65e-05	0.054	AGGAGGCGGGGAGGAGGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	22	36	-	7.95082	7.65e-05	0.0708	GGTCCCGCCCCTCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	22	36	-	7.95082	7.65e-05	0.0708	GGTCCCGCCCCTCTG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	3	13	+	11.1091	7.65e-05	0.0552	ACCCTGCGGCT
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	45	55	+	11.1091	7.65e-05	0.0552	ACCCTGCGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	63	73	+	11.1091	7.65e-05	0.0552	CGCCTCGAGCT
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	60	70	-	11.1091	7.65e-05	0.0552	ACCCTGCGGCT
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	102	112	-	11.1091	7.65e-05	0.0552	ACCCTGCGGCT
Hoxa11	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	28	39	-	11.2903	7.65e-05	1	GCTCATAAACCT
Hoxa11	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	76	87	+	11.2903	7.65e-05	1	GCTCATAAACCT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	2	22	-	9.38776	7.65e-05	0.0211	GGAGCGGGAGGAGGGAGGGCT
ZNF263	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	66	86	-	9.38776	7.65e-05	0.0211	GGGGCACAGGGGGCTGAGGAG
ZNF263	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	68	88	-	9.38776	7.65e-05	0.0211	GGGGGTGGGGCAGGTGGGATT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	69	89	-	9.38776	7.65e-05	0.0211	TGAGAAGACAGGTGGAGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	69	89	-	9.38776	7.65e-05	0.0211	TGAGAAGACAGGTGGAGGGAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	73	93	-	9.38776	7.65e-05	0.0211	AGAGCAGCGGATGCAGAAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	82	102	-	9.38776	7.65e-05	0.0211	GGAGCCGGCCGGCGGGAGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	82	102	-	9.38776	7.65e-05	0.0211	GGAGCCGGCCGGCGGGAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	9	29	+	9.38776	7.65e-05	0.0211	AAGAGAACGGGGGCGGGGGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	27	47	+	9.38776	7.65e-05	0.0211	GGGGGTGGGGCAGGTGGGATT
ZNF263	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	29	49	+	9.38776	7.65e-05	0.0211	GGGGCACAGGGGGCTGAGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	92	112	+	9.38776	7.65e-05	0.0211	GGAGCTAGAGCGGGGAAGAAA
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	4	14	-	10.8182	7.65e-05	1	TGACGTAAGAT
NFIL3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	4	14	-	10.8182	7.65e-05	1	TGACGTAAGAT
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	4	14	-	10.8182	7.65e-05	1	TGACGTAAGAT
NFIL3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	4	14	-	10.8182	7.65e-05	1	TGACGTAAGAT
NFIL3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	4	14	-	10.8182	7.65e-05	1	TGACGTAAGAT
NFIL3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.1	34	44	-	10.8182	7.65e-05	1	TTTTGTAATAT
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	34	44	-	10.8182	7.65e-05	1	TTTTGTAATAT
NFIL3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.0	34	44	-	10.8182	7.65e-05	1	TTTTGTAATAT
NFIL3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	34	44	-	10.8182	7.65e-05	1	TTTTGTAATAT
SP3	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	11	21	+	10.8455	7.65e-05	0.025	ACCCCTCCCAT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	71	81	+	10.8455	7.65e-05	0.025	ACCCCCCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	71	81	+	10.8455	7.65e-05	0.025	ACCCCCCCCAC
MAF::NFE2	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	6	20	-	8.32787	7.65e-05	0.477	ATGACTCGGCCGCAG
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	89	98	+	11.6939	7.65e-05	0.422	GACACCTGTG
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	89	98	+	11.6939	7.65e-05	0.422	GACACCTGTG
JUNB	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	90	100	+	10.8163	7.65e-05	0.228	CACTGACTCAT
JUNB	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	15	25	-	10.8163	7.65e-05	0.228	CACTGACTCAT
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	1	11	-	11.1538	7.65e-05	0.401	TTTCTGACTCA
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	11	21	+	11.1538	7.65e-05	0.401	GCTCTGAGTCA
BATF::JUN	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	85	95	-	11.1538	7.65e-05	0.401	TTTCTGACTCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	46	57	-	11.0161	7.65e-05	0.281	CCGCCCACCCCC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	58	69	+	11.0161	7.65e-05	0.281	CCGCCCACCCCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	58	69	+	11.0161	7.65e-05	0.281	CCGCCCACCCCC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	64	75	+	11.0161	7.65e-05	0.281	CCGCCCACCCCC
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	24	33	+	12.0962	7.65e-05	0.404	GGCACCTGGT
TCF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	24	33	+	12.0962	7.65e-05	0.404	GGCACCTGGT
TCF3	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	67	76	-	12.0962	7.65e-05	0.404	GGCACCTGGT
ELF4	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	60	71	+	8.78689	7.65e-05	0.115	ACAACGGAAGTA
SP1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	14	24	-	10.6346	7.65e-05	0.0185	CTCCCACCCCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	22	32	-	10.6346	7.65e-05	0.0185	ACCCCTCCTAC
SP1	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	32	42	+	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	38	48	+	10.6346	7.65e-05	0.0185	CCCCCACCTCA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	30	40	-	10.6346	7.65e-05	0.0185	CCCCCACCTCA
SP1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	31	41	-	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	38	48	-	10.6346	7.65e-05	0.0185	CTCCCTCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	57	67	-	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	57	67	-	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	57	67	-	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	67	77	+	10.6346	7.65e-05	0.0185	ACCCCTCCTAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	67	77	+	10.6346	7.65e-05	0.0185	ACCCCTCCTAC
SP1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	74	84	+	10.6346	7.65e-05	0.0185	GCCCTGCCCCT
SP1	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	75	85	+	10.6346	7.65e-05	0.0185	CCCCCACCTCA
SP1	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	67	77	-	10.6346	7.65e-05	0.0185	CCCCCACCTCA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	73	83	-	10.6346	7.65e-05	0.0185	CTCCCACCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	73	83	-	10.6346	7.65e-05	0.0185	CTCCCACCCCA
GLIS2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	18	31	-	7.85246	7.65e-05	0.185	GACCCCCCCCCCCG
GLIS2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	84	97	+	7.85246	7.65e-05	0.185	GACCCCCCCCCCCG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	5	17	-	7.86364	7.65e-05	0.264	AGGGGGGGCCCCG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	67	79	-	7.86364	7.65e-05	0.264	AGGGGGGGCCCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	29	42	-	8.46552	7.65e-05	0.0376	GAGCCCGCCCCTGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	29	42	-	8.46552	7.65e-05	0.0376	GAGCCCGCCCCTGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	9	23	-	7.78571	7.65e-05	0.119	TCCAACCCCCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	23	37	-	7.78571	7.65e-05	0.119	CACTCCCCGACGCGG
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr15:91208884..91208998,-__2162.1.0.0	79	93	+	7.78571	7.65e-05	0.119	TCCAACCCCCTGCGC
ETV2	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	56	66	+	10.1475	7.65e-05	0.183	AACAGGAAAGG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	49	59	-	10.1475	7.65e-05	0.183	AACAGGAAAGG
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	49	59	-	10.1475	7.65e-05	0.183	AACAGGAAAGG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	49	59	-	10.1475	7.65e-05	0.183	AACAGGAAAGG
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	49	59	-	10.1475	7.65e-05	0.183	AACAGGAAAGG
EGR3	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	7	21	-	5.98276	7.65e-05	0.0417	CCCCCCTCCCGCAAG
EGR3	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	61	75	-	5.98276	7.65e-05	0.0417	CCCCCCTCCCGCAAG
EGR3	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	94	108	+	5.98276	7.65e-05	0.0417	CCCCCCTCCCGCAAG
CDX2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	4	14	-	11.5424	7.65e-05	1	AACCCATAAAG
Zfx	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	34	47	+	10.5	7.65e-05	0.0658	GGAGGCCAAGCCTG
Zfx	WILDTYPE__Lincrna.flip.sense__chr11:65265153..65265267,+__191.1.0.0	51	64	+	10.5	7.65e-05	0.0658	CCCTCCGCAGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr11:65265153..65265267,-__2635.1.0.0	51	64	-	10.5	7.65e-05	0.0658	CCCTCCGCAGCCTG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	26	39	+	5.93421	7.65e-05	0.56	CGACCCGCTGTTTT
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	26	39	+	5.93421	7.65e-05	0.56	CGACCCGCTGTTTT
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	26	39	+	5.93421	7.65e-05	0.56	CGACCCGCTGTTTT
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	52	65	+	5.93421	7.65e-05	0.56	TTAACAGCTTTTGT
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	52	65	+	5.93421	7.65e-05	0.56	TTAACAGCTTTTGT
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	52	65	+	2.4	7.65e-05	0.239	AGGAAGAGGAAGGA
SPI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	52	65	+	2.4	7.65e-05	0.239	AGGAAGAGGAAGGA
SPI1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	69	82	+	2.4	7.65e-05	0.239	AGGAAGAGGAAGGA
SPI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	33	46	-	2.4	7.65e-05	0.239	AGGAAGAGGAAGGA
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	33	46	-	2.4	7.65e-05	0.239	AGGAAGAGGAAGGA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	26	37	+	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	26	37	+	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	31	42	+	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	98	109	+	8.67273	7.65e-05	0.127	GCGCCGGAAGCA
ELF1	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	17	-	8.67273	7.65e-05	0.127	GCGCCGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	84	-	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	84	-	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	89	-	8.67273	7.65e-05	0.127	ATTGCGGAAGTT
ELF1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	79	90	-	8.67273	7.65e-05	0.127	AGCGCGGAAGCC
SPIC	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	49	62	+	10.662	7.65e-05	0.281	CGGAAGCGGAAGCC
SPIC	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	65	78	+	10.662	7.65e-05	0.281	GGAAACCGGAAGCG
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.2.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	15	28	-	10.662	7.65e-05	0.281	AGAATGAGGCAGCA
SPIC	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	53	66	-	10.662	7.65e-05	0.281	CGGAAGCGGAAGCC
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	+	11.0727	7.65e-05	0.0579	CGCCCCGCGGGA
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	+	11.0727	7.65e-05	0.0579	CGCCCCGCGGGA
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	-	11.0727	7.65e-05	0.0579	CGCCCCGCGGGA
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	-	11.0727	7.65e-05	0.0579	CGCCCCGCGGGA
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	92	102	+	11.0727	7.65e-05	0.0696	GGGCTTCCGCG
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	92	102	+	11.0727	7.65e-05	0.0696	GGGCTTCCGCG
Twist2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	3	12	-	11.6066	7.66e-05	1	GACATGTGTG
Twist2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	103	112	+	11.6066	7.66e-05	1	GACATGTGTG
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	12	26	-	10.0303	7.66e-05	0.121	GGCTCGCGTGGGTCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	89	103	+	10.0303	7.66e-05	0.121	GGCTCGCGTGGGTCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	89	103	+	10.0303	7.66e-05	0.121	GGCTCGCGTGGGTCG
E2F3	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	52	69	+	2.49091	7.66e-05	1	GGAAAGCGCGCGCCAGCT
E2F3	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	80	97	+	2.49091	7.66e-05	1	GGAAAGCGCGCGCCAGCT
TP53	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	96	113	-	6.18367	7.66e-05	0.979	GGCGAGCCCGGGCCAGCA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	49	+	4.91837	7.66e-05	0.377	TGGCAGATGGCAAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	49	+	4.91837	7.66e-05	0.377	TGGCAGATGGCAAG
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	49	+	4.91837	7.66e-05	0.377	TGGCAGATGGCAAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	49	+	4.91837	7.66e-05	0.377	TGGCAGATGGCAAG
Spz1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	22	32	-	11.0727	7.66e-05	0.77	ACAGTTTCAGC
Spz1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	83	93	+	11.0727	7.66e-05	0.77	ACAGTTTCAGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	17	35	+	10.3065	7.66e-05	0.15	CGGCCTAGGCAGCCGGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	17	35	+	10.3065	7.66e-05	0.15	CGGCCTAGGCAGCCGGGAC
PAX5	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	43	61	+	10.3065	7.66e-05	0.15	GGGGCCGGGCGGGCGGAGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	74	92	+	10.3065	7.66e-05	0.15	CGGGTCAGTGATGCGAAGG
PAX5	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	54	72	-	10.3065	7.66e-05	0.15	GGGGCCGGGCGGGCGGAGC
HOXC13	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	21	31	+	10.4032	7.66e-05	1	TCTCATAAAGC
HOXC13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	21	31	+	10.4032	7.66e-05	1	TCTCATAAAGC
HOXC13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	21	31	+	10.4032	7.66e-05	1	TCTCATAAAGC
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	5	15	-	10.2182	7.66e-05	0.238	TGCTGACTCAT
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	5	15	-	10.2182	7.66e-05	0.238	TGCTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	48	58	+	10.2182	7.66e-05	0.238	AGATGGCTCAC
FOXH1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	99	109	-	11.1923	7.66e-05	1	TCTAATCCACT
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	20	31	-	10.9518	7.66e-05	1	ATATGAAAATGT
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	1	10	-	11.4615	7.66e-05	1	GCCACTTGGA
NKX2-3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	1	10	-	11.4615	7.66e-05	1	GCCACTTGGA
NKX2-3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	1	10	-	11.4615	7.66e-05	1	GCCACTTGGA
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	30	40	+	10	7.66e-05	0.269	TCCCGGAAGCC
SPDEF	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	92	102	+	10	7.66e-05	0.269	TCCCGGAAGCC
SPDEF	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	23	-	10	7.66e-05	0.269	TCCCGGAAGCC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	8	17	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	8	17	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	39	48	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	39	48	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	39	48	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	39	48	-	10.7	7.66e-05	0.244	AGCAGCAGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	62	71	+	10.7	7.66e-05	0.244	AGCAGCAGCT
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	97	109	+	1.69388	7.66e-05	0.253	AGGGGATCCAGCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	97	109	+	1.69388	7.66e-05	0.253	AGGGGATCCAGCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	97	109	+	1.69388	7.66e-05	0.253	AGGGGATCCAGCG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	97	109	+	1.69388	7.66e-05	0.253	AGGGGATCCAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	11.2308	7.66e-05	0.147	GACGGAAGTG
FEV	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	11.2308	7.66e-05	0.147	GACGGAAGTG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	93	110	+	-15.25	7.66e-05	0.054	GGCGAGGGGGGAGGTAAG
CEBPG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	26	35	+	10.2245	7.66e-05	0.888	GTTGTGCAAT
CEBPG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	26	35	+	10.2245	7.66e-05	0.888	GTTGTGCAAT
CEBPG	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	32	41	+	10.2245	7.66e-05	0.888	GTTGTGCAAT
CEBPG	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	74	83	-	10.2245	7.66e-05	0.888	GTTGTGCAAT
CEBPG	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	102	111	-	10.2245	7.66e-05	0.888	GTTGTGCAAT
ATF4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	24	36	-	9.42623	7.66e-05	0.664	TGCTGATGCCATT
ATF4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	79	91	+	9.42623	7.66e-05	0.664	TGCTGATGCCATT
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	32	45	-	5.95745	7.66e-05	0.102	CCCTCCCCGCAGAG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	85	98	-	5.95745	7.66e-05	0.102	CGCCCTCCGCTGGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	23	37	+	6.94737	7.66e-05	0.274	GGCGTGAGCCAGCAT
MAX::MYC	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	38	48	-	10.1735	7.66e-05	0.343	GCGAACGTGGT
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.1.0	40	50	-	10.1735	7.66e-05	0.343	GCGCACATGGT
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:31044799..31044913,+__1507.1.0.0	40	50	-	10.1735	7.66e-05	0.343	GCGCACATGGT
MAX::MYC	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	67	77	+	10.1735	7.66e-05	0.343	GCGAACGTGGT
PAX1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	88	104	+	5.14545	7.67e-05	0.619	GGCCCCGCTCCGTCGCC
PAX1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	11	27	-	5.14545	7.67e-05	0.619	GGCCCCGCTCCGTCGCC
Myod1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	29	+	11.4694	7.67e-05	0.185	TGCACCTGCGATC
Myod1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	86	98	-	11.4694	7.67e-05	0.185	TGCACCTGCGATC
SNAI2	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	23	31	+	11.1395	7.67e-05	0.522	ATCAGGTGC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	30	39	-	9.77586	7.67e-05	0.249	GTCACCCGAC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	76	85	+	9.77586	7.67e-05	0.249	GTCACCCGAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	34	47	-	10.9231	7.67e-05	0.224	GCTCAGTGAGTCAC
HINFP	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	4	15	-	10.4545	7.67e-05	0.109	GCACGTGCGCGC
HINFP	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	27	38	-	10.4545	7.67e-05	0.109	GCACGTGCGCGC
HINFP	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	88	+	10.4545	7.67e-05	0.109	GCACGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	67	78	-	10.4545	7.67e-05	0.109	CGGCCTCCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	67	78	-	10.4545	7.67e-05	0.109	CGGCCTCCGCTC
HINFP	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	94	105	+	10.4545	7.67e-05	0.109	CCGCGTCCGTTC
HINFP	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	111	+	10.4545	7.67e-05	0.109	GCACGTGCGCGC
HINFP	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	96	107	-	10.4545	7.67e-05	0.109	CGGCCTCCGCTC
Rfx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	68	81	+	9.84483	7.67e-05	0.295	GGCGTCCCGGCGAC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	16	27	-	10.6286	7.67e-05	0.217	GCCGTCCACCGT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	16	27	-	10.6286	7.67e-05	0.217	GCCGTCCACCGT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	16	27	-	10.6286	7.67e-05	0.217	GCCGTCCACCGT
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	42	53	-	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	9	20	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	9	20	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	9	20	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	9	20	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	9	20	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	16	27	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	16	27	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	62	73	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	62	73	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	62	73	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	62	73	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	62	73	+	10.6286	7.67e-05	0.217	CCCGCCCACCTT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	51	65	+	10.6486	7.67e-05	0.188	CTTGGCCAAGGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	51	65	+	10.6486	7.67e-05	0.188	CTTGGCCAAGGGGAA
TEAD4	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	58	67	+	11.1613	7.67e-05	0.799	CAAATTCCAA
TEAD4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	48	57	-	11.1613	7.67e-05	0.799	CAAATTCCAA
TEAD4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	48	57	-	11.1613	7.67e-05	0.799	CAAATTCCAA
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	57	71	-	10.1273	7.67e-05	0.335	AGGAAGTGAATGCGT
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	57	71	-	10.1273	7.67e-05	0.335	AGGAAGTGAATGCGT
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	53	62	+	11.6742	7.67e-05	0.973	TATAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	53	62	+	11.6742	7.67e-05	0.973	TATAAGGTCA
RORA	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	84	93	-	11.6742	7.67e-05	0.973	TATAAGGTCA
NRL	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	63	73	+	10.6731	7.67e-05	0.823	TTTTTGCTGAG
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	77	97	-	8.64516	7.67e-05	0.187	CTCGACTTGCAGTTTCACCCA
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	77	97	-	8.64516	7.67e-05	0.187	CTCGACTTGCAGTTTCACCCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	17	33	-	3.34545	7.67e-05	0.0322	GCTGCCCCGCCCCGGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	17	33	-	3.34545	7.67e-05	0.0322	GCTGCCCCGCCCCGGGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	26	42	-	3.34545	7.67e-05	0.0322	CGAGCCCCGCCTCGCTG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	26	42	-	3.34545	7.67e-05	0.0322	CGAGCCCCGCCTCGCTG
SP4	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	38	54	-	3.34545	7.67e-05	0.0322	TCTGCCCCGCCCAGGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	68	84	-	3.34545	7.67e-05	0.0322	CGAGCCCCGCCTCGCTG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	68	84	-	3.34545	7.67e-05	0.0322	CGAGCCCCGCCTCGCTG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	28	41	-	5.23469	7.67e-05	0.0744	GGGGGCAACTGTGA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	28	41	-	5.23469	7.67e-05	0.0744	GGGGGCAACTGTGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.8.1	20	33	+	5.23469	7.67e-05	0.0744	GGGGGCAACAGTGA
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	73	86	+	5.23469	7.67e-05	0.0744	GGGGGCAACTGTGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	73	86	+	5.23469	7.67e-05	0.0744	GGGGGCAACTGTGA
SCRT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	57	69	+	6.34426	7.67e-05	1	CTTCCACAGGTAT
SCRT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	57	69	+	6.34426	7.67e-05	1	CTTCCACAGGTAT
ZIC4	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	25	39	-	10.1091	7.67e-05	0.109	CCCCGCCCGGCGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	30	44	-	10.1091	7.67e-05	0.109	GCCCCCCCACCTCGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	46	60	-	10.1091	7.67e-05	0.109	GGCCTCCTGGCGCGG
ZIC4	FLIPPED__Enhancer.flip.antisense__chr1:203259728..203259842,-__2838.1.0.0	90	104	-	10.1091	7.67e-05	0.109	CGCCTCCCGCCGGCC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr1:203259728..203259842,+__1832.1.0.0	11	25	+	10.1091	7.67e-05	0.109	CGCCTCCCGCCGGCC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	33	47	+	10.1091	7.67e-05	0.109	GGCCTCCTGGCGCGG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	84	98	+	10.1091	7.67e-05	0.109	TCCACCCTGCTGTCT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	55	65	-	10.6393	7.67e-05	0.0725	CCGGAACCGAG
POU4F2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	93	108	-	6.83636	7.67e-05	1	CAGCATTATAAATGGT
POU3F3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	59	71	-	10.66	7.67e-05	1	GTCATGCTAATAT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	+	10.0851	7.67e-05	0.244	TCTGAGTCACA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	+	10.0851	7.67e-05	0.244	TCTGAGTCACA
JUND	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	+	10.0851	7.67e-05	0.244	TCTGAGTCACA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	-	10.0851	7.67e-05	0.244	TCTGAGTCACA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	-	10.0851	7.67e-05	0.244	TCTGAGTCACA
JUND	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	-	10.0851	7.67e-05	0.244	TCTGAGTCACA
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	36	45	+	10.4495	7.68e-05	0.0553	GCCCTCCCAC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	28	+	9.53448	7.68e-05	0.0556	AGCCCTTCCGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	61	73	+	9.53448	7.68e-05	0.0556	CGCCTTTGGGGGC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	99	-	9.53448	7.68e-05	0.0556	AGCCCTTCCGGGA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	92	104	-	9.53448	7.68e-05	0.0556	GCCCCGGCGGGGG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	26	40	+	9.07143	7.68e-05	0.122	CCGCGTGAGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	26	40	+	9.07143	7.68e-05	0.122	CCGCGTGAGGGGGCG
TP73	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	40	57	-	8.21154	7.68e-05	0.667	GACGTGTCAGGCCCCGCC
TP73	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	40	57	-	8.21154	7.68e-05	0.667	GACGTGTCAGGCCCCGCC
TP73	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	40	57	-	8.21154	7.68e-05	0.667	GACGTGTCAGGCCCCGCC
TP73	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	40	57	-	8.21154	7.68e-05	0.667	GACGTGTCAGGCCCCGCC
TP73	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	30	47	+	8.21154	7.68e-05	0.667	TACAACCTGTGACATGCA
TP73	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	58	75	+	8.21154	7.68e-05	0.667	GACGTGTCAGGCCCCGCC
INSM1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	92	103	-	9.5	7.68e-05	0.193	TGCCAGGGGACA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	73	86	+	10	7.68e-05	0.0275	CTCCCACCTCCTTG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	73	86	+	10	7.68e-05	0.0275	CTCCCACCTCCTTG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	75	88	+	10	7.68e-05	0.0275	GATCCACTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	75	88	+	10	7.68e-05	0.0275	GATCCACTCCCTCC
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	49	58	+	11.1091	7.68e-05	0.126	GGCGGAAGTT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	49	58	+	11.1091	7.68e-05	0.126	GGCGGAAGTT
ETV5	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	68	77	+	11.1091	7.68e-05	0.126	GGCGGAAGTT
ETV5	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	38	47	-	11.1091	7.68e-05	0.126	GGCGGAAGTT
ETV5	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	66	-	11.1091	7.68e-05	0.126	GGCGGAAGTT
USF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	12	-	11.1224	7.68e-05	0.158	GGCACGTGCCT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	12	-	11.1224	7.68e-05	0.158	GGCACGTGCCT
USF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	23	33	-	11.1224	7.68e-05	0.158	CACACGTGATC
HSF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	42	54	-	8.70909	7.68e-05	1	TTCCGGAAAACTC
HSF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	42	54	-	8.70909	7.68e-05	1	TTCCGGAAAACTC
HSF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	42	54	-	8.70909	7.68e-05	1	TTCCGGAAAACTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	57	69	-	9.65574	7.68e-05	0.0644	CCCCTCCCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	57	69	-	9.65574	7.68e-05	0.0644	CCCCTCCCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	101	113	+	9.65574	7.68e-05	0.0644	GCCCCCGGCGGCT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	30	44	+	9.48485	7.68e-05	0.348	GCATGTGACTCACCA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	28	42	-	9.48485	7.68e-05	0.348	GCATGTGACTCACCA
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	44	53	+	11.4138	7.68e-05	0.659	CCTTTCTCTT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	44	53	+	11.4138	7.68e-05	0.659	CCTTTCTCTT
Sox3	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	49	58	-	11.4138	7.68e-05	0.659	CCTTTCTCTT
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	50	62	+	10.9268	7.68e-05	1	TGGGTGTGACCTC
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	9	21	-	10.9268	7.68e-05	1	TGGGTGTGACCTC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	+	10.0328	7.68e-05	0.0589	CGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	+	10.0328	7.68e-05	0.0589	CGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	+	10.0328	7.68e-05	0.0589	CGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	+	10.0328	7.68e-05	0.0589	CGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	+	10.0328	7.68e-05	0.0589	CGCCGCGCAGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	91	103	-	10.0328	7.68e-05	0.0589	TCCCGCGGAGGCT
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	33	50	+	-15.2632	7.68e-05	0.054	GGTGGGGGGGAAGGGGGA
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	54	71	+	-15.2632	7.68e-05	0.054	GGGAGGAGAGGTGGAGGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	73	90	+	-15.2632	7.68e-05	0.054	GGAGGAGGAGAAGCAGTG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	44	61	-	-15.2632	7.68e-05	0.054	GGGAGGAGAGGTGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	44	61	-	-15.2632	7.68e-05	0.054	GGGAGGAGAGGTGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	44	61	-	-15.2632	7.68e-05	0.054	GGGAGGAGAGGTGGAGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	65	82	-	-15.2632	7.68e-05	0.054	GGTGGGGGGGAAGGGGGA
CEBPA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	80	90	+	11.2857	7.68e-05	0.79	ATTTCCCAATA
CEBPA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	80	90	+	11.2857	7.68e-05	0.79	ATTTCCCAATA
GLIS1	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	10	25	+	-10.0769	7.68e-05	0.329	AGGCCCGTGACGAAGC
GLIS1	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	2	17	-	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	7	22	-	-10.0769	7.68e-05	0.329	AGACCCCCCCCCCAGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	7	22	-	-10.0769	7.68e-05	0.329	AGACCCCCCCCCCAGC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	10	25	-	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	10	25	-	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	10	25	-	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	10	25	-	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	34	49	+	-10.0769	7.68e-05	0.329	CGCCCCGCCCCGAAGC
GLIS1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	66	81	-	-10.0769	7.68e-05	0.329	CGCCCCGCCCCGAAGC
GLIS1	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	90	105	+	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	98	113	+	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	98	113	+	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	98	113	+	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	98	113	+	-10.0769	7.68e-05	0.329	CTACCCCGCGCGCAGT
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr17:72637914..72638028,-__2065.1.0.0	73	87	+	10.8028	7.68e-05	0.362	AATGGGAAAACAACA
Myog	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	16	26	-	11.5102	7.68e-05	0.177	CGCAGGTGCAG
Myog	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	99	+	11.5102	7.68e-05	0.177	CGCAGGTGCAG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	81	95	+	9.28788	7.68e-05	0.342	TCATTTTCTCTTCCT
Foxd3	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	80	91	+	11.1087	7.68e-05	1	ACTTGTTTATTT
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	53	+	10.9898	7.68e-05	0.0866	CGCCGCGGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	53	+	10.9898	7.68e-05	0.0866	CGCCGCGGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	53	+	10.9898	7.68e-05	0.0866	CGCCGCGGGGGA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	53	+	10.9898	7.68e-05	0.0866	CGCCGCGGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	53	+	10.9898	7.68e-05	0.0866	CGCCGCGGGGGA
RUNX1	WILDTYPE__Antisense.flip.sense__chr1:145507431..145507545,-__16.1.0.0	61	71	+	11.1379	7.69e-05	0.285	TTCTGTGGCCA
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.1	97	107	+	11.1379	7.69e-05	0.285	ACTTGTGGCTT
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	97	107	+	11.1379	7.69e-05	0.285	ACTTGTGGCTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	97	107	+	11.1379	7.69e-05	0.285	ACTTGTGGCTT
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.1.0	97	107	+	11.1379	7.69e-05	0.285	ACTTGTGGCTT
TEF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	64	75	+	10.3636	7.69e-05	1	CGTTGCGTAATT
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	11.0606	7.69e-05	0.585	GGCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	11.0606	7.69e-05	0.585	GGCACGTGGC
HNF4G	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	18	32	-	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
HNF4G	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	83	97	+	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	83	97	+	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	83	97	+	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
HNF4G	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	83	97	+	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
HNF4G	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	83	97	+	10.5192	7.69e-05	0.341	ACAGGCCAATGTTCA
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	18	27	-	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	18	27	-	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	64	73	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	64	73	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	64	73	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	64	73	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	64	73	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	88	97	+	9.91489	7.69e-05	0.101	GCCGGAAGAA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	101	110	+	9.91489	7.69e-05	0.101	GCCGTAAGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	101	110	+	9.91489	7.69e-05	0.101	GCCGTAAGTG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	20	34	+	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	20	34	+	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	20	34	+	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	20	34	+	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	19	33	-	7.93443	7.69e-05	0.0708	AACCACACTCCTATT
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	52	66	-	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	52	66	-	7.93443	7.69e-05	0.0708	CACCCCGCCCAGCGC
ETS1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	11.1552	7.69e-05	0.113	CCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	77	-	11.1552	7.69e-05	0.113	ACCGGAAGGC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	77	-	11.1552	7.69e-05	0.113	ACCGGAAGGC
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	77	-	11.1552	7.69e-05	0.113	ACCGGAAGGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	42	61	-	3.29358	7.69e-05	0.0693	AACCCAATCAATACATCTCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	42	61	-	3.29358	7.69e-05	0.0693	AACCCAATCAATACATCTCA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	42	61	-	3.29358	7.69e-05	0.0693	AACCCAATCAATACATCTCA
POU4F3	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	5	20	-	10.5433	7.69e-05	1	AGGCATTTTAAATGAT
MLXIPL	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	11.3333	7.69e-05	0.297	ACCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	11.3333	7.69e-05	0.297	ACCACGTGAC
ZIC3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	47	61	+	7.77143	7.69e-05	0.119	ACCCCCCCACGGTCC
ZIC3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	54	68	-	7.77143	7.69e-05	0.119	ACCCCCCCACGGTCC
MAFF	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	94	111	+	10.6444	7.69e-05	0.965	AGTACGTCAGCAAATTGG
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	34	51	-	10.6444	7.69e-05	0.965	AGTACGTCAGCAAATTGG
MAFF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	34	51	-	10.6444	7.69e-05	0.965	AGTACGTCAGCAAATTGG
MAFF	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	41	58	-	10.6444	7.69e-05	0.965	GCAGATTCAGCTTTCTCT
EGR3	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	20	34	+	5.96552	7.69e-05	0.0417	CCCCGCCCCGGCCGG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	22	+	10.0182	7.69e-05	0.0402	CCCCCCCCCCCCCCGT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	22	+	10.0182	7.69e-05	0.0402	CCCCCCCCCCCCCCGT
EGR4	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	64	79	-	10.0182	7.69e-05	0.0402	CTCCTCCCGCGCCTCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	96	111	+	10.0182	7.69e-05	0.0402	CCTCTCCCACCCCCTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	96	111	+	10.0182	7.69e-05	0.0402	CCTCTCCCACCCCCTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	96	111	+	10.0182	7.69e-05	0.0402	CCTCTCCCACCCCCTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	96	111	+	10.0182	7.69e-05	0.0402	CCTCTCCCACCCCCTT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	96	111	+	10.0182	7.69e-05	0.0402	CCTCTCCCACCCCCTT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	93	108	-	10.0182	7.69e-05	0.0402	CCCCCCCCCCCCCCGT
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	4	13	+	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	1	10	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	34	43	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	37	46	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	37	46	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	37	46	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	56	65	+	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	50	59	-	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	68	77	+	9.25455	7.69e-05	0.254	ATCATGTGAC
SREBF2(var.2)	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	105	114	+	9.25455	7.69e-05	0.254	ATCATGTGAC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	37	51	-	10.1207	7.69e-05	0.0164	AGCCCACCCCTTTAC
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	16	29	+	10.4848	7.7e-05	0.0658	GCCCGCTTGGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	29	42	+	10.4848	7.7e-05	0.0658	CCGGGGTAGGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	73	86	-	10.4848	7.7e-05	0.0658	CCGGGGTAGGCCTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	101	114	-	10.4848	7.7e-05	0.0658	GCCCGCTTGGCCTC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	19	31	+	9.97959	7.7e-05	0.317	CAGCTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	19	31	+	9.97959	7.7e-05	0.317	CAGCTGACGTCAC
JUN	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	76	88	-	9.97959	7.7e-05	0.317	GAGATGAGGAAAC
TEAD1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	29	38	+	11.1129	7.7e-05	1	CCCATTCCAC
TEAD1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	29	38	+	11.1129	7.7e-05	1	CCCATTCCAC
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	29	38	+	11.1129	7.7e-05	1	CCCATTCCAC
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	83	92	+	11.1129	7.7e-05	1	CCCATTCCAC
GRHL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.1.0	42	53	+	10.431	7.7e-05	1	GTAACTGGTTTT
GRHL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.0.0	42	53	+	10.431	7.7e-05	1	GTAACTGGTTTT
GRHL1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	102	113	+	10.431	7.7e-05	1	GTAACTGGTTTT
DUXA	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	18	30	+	11	7.7e-05	1	CTAAATGAATCAC
DUXA	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	89	101	-	11	7.7e-05	1	CTAAATGAATCAC
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	15	33	-	8.39344	7.7e-05	0.128	CAGCAAGCAGGAGTCGCGA
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	15	33	-	8.39344	7.7e-05	0.128	CAGCAAGCAGGAGTCGCGA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	28	40	+	9.40984	7.7e-05	0.664	TCATGACGAAATT
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	26	35	+	11.3455	7.7e-05	0.173	GCCGCGTGCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	30	39	-	11.3455	7.7e-05	0.173	GCCGCGTGCC
HEY1	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	+	11.3455	7.7e-05	0.173	GACACGTGGT
HEY1	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	-	11.3455	7.7e-05	0.173	GACACGTGGT
Pou5f1::Sox2	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	11	25	-	10.2177	7.7e-05	1	CATTCATAAGGAAAT
Pou2f3	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	78	93	+	10.3293	7.7e-05	1	TCATATGCAAAGCATG
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	10	23	-	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	10	23	-	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	10	23	-	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	10	23	-	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	10	23	-	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	54	67	+	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	54	67	+	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	54	67	+	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
RXRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	54	67	+	0.2	7.7e-05	0.546	TAGGTGAAAGTTCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.1.0	30	47	-	-15.2763	7.7e-05	0.054	GGGTGGAAGACAGGATAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:175612155..175612269,-__676.1.0.0	30	47	-	-15.2763	7.7e-05	0.054	GGGTGGAAGACAGGATAC
Mafb	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	23	34	+	11.1124	7.7e-05	0.865	CAACTGCTGAGG
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	81	92	-	11.1124	7.7e-05	0.865	CAACTGCTGAGG
Mafb	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	81	92	-	11.1124	7.7e-05	0.865	CAACTGCTGAGG
Mafb	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	81	92	-	11.1124	7.7e-05	0.865	CAACTGCTGAGG
Mafb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	81	92	-	11.1124	7.7e-05	0.865	CAACTGCTGAGG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	29	41	+	11.0204	7.7e-05	0.508	CCTGGGTCAAAGG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
ETV4	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	11.3276	7.7e-05	0.126	GCCGGAAGGG
YY2	WILDTYPE__mrna.noflip.NA__chr19:52391169..52391283,-__1050.1.0.0	67	77	+	11	7.7e-05	0.394	GGCCGCCATCC
EHF	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	32	43	+	9.98361	7.7e-05	0.137	AAACAGGAAGCA
EHF	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	96	-	9.98361	7.7e-05	0.137	AAACAGGAAGCA
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	68	79	+	11	7.71e-05	0.281	GGGACCCCCCCC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	68	79	+	11	7.71e-05	0.281	GGGACCCCCCCC
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	83	94	-	11	7.71e-05	0.281	GAAACCACCCAA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	+	9.63934	7.71e-05	0.0644	AGCCCGCGAGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	-	9.63934	7.71e-05	0.0644	AGCCCGCGAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	-	9.63934	7.71e-05	0.0644	AGCCCGCGAGGGC
SP4	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	16	32	+	3.32727	7.71e-05	0.0322	ATGGCCACCACCCCTCC
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	21	37	-	3.32727	7.71e-05	0.0322	CTCTCTCCGCCCCTTCA
SP4	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	50	66	+	3.32727	7.71e-05	0.0322	CGGGACACACCCACCCG
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	34	50	-	3.32727	7.71e-05	0.0322	CACCCTCCGCCCCCACA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	34	50	-	3.32727	7.71e-05	0.0322	AGAGCCCCGCGCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	34	50	-	3.32727	7.71e-05	0.0322	AGAGCCCCGCGCCCGCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	36	52	-	3.32727	7.71e-05	0.0322	CGGGCCCCGCGCCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	36	52	-	3.32727	7.71e-05	0.0322	CGGGCCCCGCGCCCGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	36	52	-	3.32727	7.71e-05	0.0322	CGGGCCCCGCGCCCGCG
SP4	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	49	65	-	3.32727	7.71e-05	0.0322	CGGGACACACCCACCCG
SP4	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	83	99	-	3.32727	7.71e-05	0.0322	ATGGCCACCACCCCTCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	24	38	-	10.0152	7.71e-05	0.121	TTCCCGTGATGCCCC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	24	38	-	10.0152	7.71e-05	0.121	TTCCCGTGATGCCCC
ZBTB33	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	77	91	+	10.0152	7.71e-05	0.121	TTCCCGTGATGCCCC
RXRG	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	98	111	+	1.25532	7.71e-05	0.48	GGGGTCAGAGGAGA
RXRG	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	4	17	-	1.25532	7.71e-05	0.48	GGGGTCAGAGGAGA
HES7	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	100	111	-	2.84483	7.71e-05	0.2	TGGCACCTGGCG
HES7	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	4	15	+	2.84483	7.71e-05	0.2	TGGCACCTGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	40	50	+	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	40	50	+	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	40	50	+	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	40	50	+	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	46	56	+	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	69	-	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	75	-	10.9423	7.71e-05	0.0758	CGCCGGAAGCG
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	100	109	-	11.082	7.71e-05	0.389	TCCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	6	15	+	11.082	7.71e-05	0.389	GGCACCTGAC
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	6	15	+	11.082	7.71e-05	0.389	GGCACCTGAC
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	6	15	+	11.082	7.71e-05	0.389	GGCACCTGAC
ID4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	6	15	+	11.082	7.71e-05	0.389	GGCACCTGAC
E2F4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	16	26	+	10.5517	7.71e-05	0.0509	CGGCGGGGGGC
E2F4	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	23	33	+	10.5517	7.71e-05	0.0509	CGGCGGGGGGC
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	76	86	+	10.5517	7.71e-05	0.0509	CGGCGGGGGGC
E2F4	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	82	92	-	10.5517	7.71e-05	0.0509	CGGCGGGGGGC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	44	55	+	11.0182	7.71e-05	0.0924	CCCCCCAGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	23	34	-	11.0182	7.71e-05	0.0924	CCCCCCAGGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	23	34	-	11.0182	7.71e-05	0.0924	CCCCCCAGGCCG
MLX	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	-	9.81429	7.71e-05	0.328	GCCACGTGAA
RREB1	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	10	29	+	3.2844	7.71e-05	0.0694	TCCCTCCTCACCACACCACC
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	26	40	-	10.6396	7.71e-05	0.188	CGGGAGGAGGGGTGA
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	5	16	+	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	5	16	+	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	5	16	+	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	5	16	+	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	28	39	-	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	28	39	-	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	28	39	-	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	28	39	-	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
HINFP	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	76	87	+	10.4394	7.71e-05	0.109	GCGCGTGCGCGT
RUNX2	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	53	61	+	11.3846	7.71e-05	0.557	AAACCGCGA
NEUROG2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	16	25	-	9.62121	7.71e-05	1	GACAGATGCT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	39	52	+	5.93617	7.71e-05	0.102	GAGCCCCCGGCGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	39	52	+	5.93617	7.71e-05	0.102	GAGCCCCCGGCGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	36	49	-	5.93617	7.71e-05	0.102	GGGCGCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	36	49	-	5.93617	7.71e-05	0.102	GGGCGCCCGCGGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	36	49	-	5.93617	7.71e-05	0.102	GGGCGCCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	36	49	-	5.93617	7.71e-05	0.102	GGGCGCCCGCGGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	59	72	+	5.93617	7.71e-05	0.102	AGCCGCCCGCTGGT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	59	72	+	5.93617	7.71e-05	0.102	AGCCGCCCGCTGGT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	11	22	+	10.6184	7.71e-05	0.0355	CCCCCCCCCCGT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	11	22	+	10.6184	7.71e-05	0.0355	CCCCCCCCCCGT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	28	39	+	10.6184	7.71e-05	0.0355	GCCTCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	28	39	+	10.6184	7.71e-05	0.0355	GCCTCGCCCCTT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	24	35	-	10.6184	7.71e-05	0.0355	GCCACGCCCCTG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	24	35	-	10.6184	7.71e-05	0.0355	GCCACGCCCCTG
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	27	38	-	10.6184	7.71e-05	0.0355	GCCTCTCCCCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	27	38	-	10.6184	7.71e-05	0.0355	GCCTCTCCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	28	39	-	10.6184	7.71e-05	0.0355	GCTACGCCCAGA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	39	50	+	10.6184	7.71e-05	0.0355	GCCACGCCCCTG
SP8	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	37	48	-	10.6184	7.71e-05	0.0355	GCCCCACCCGCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	56	67	+	10.6184	7.71e-05	0.0355	CCCCCCCCCCGT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	54	65	-	10.6184	7.71e-05	0.0355	GCCACGCCCCTG
SP8	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	91	102	-	10.6184	7.71e-05	0.0355	GCCACCGCCACA
SP8	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	93	104	-	10.6184	7.71e-05	0.0355	CCCCCCCCCCGT
RELA	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	13	22	+	9.40816	7.72e-05	0.241	TTGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	42	51	+	9.40816	7.72e-05	0.241	TTGACTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	42	51	+	9.40816	7.72e-05	0.241	TTGACTTTCC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	58	67	-	9.40816	7.72e-05	0.241	TTGACTTTCC
RELA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	58	67	-	9.40816	7.72e-05	0.241	TTGACTTTCC
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	96	107	-	10.5968	7.72e-05	1	ATATACAAATGA
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	96	107	-	10.5968	7.72e-05	1	ATATACAAATGA
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	23	36	+	10.6479	7.72e-05	0.281	CCACACAGGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	56	69	+	10.6479	7.72e-05	0.281	GGAAACCCGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	97	110	+	10.6479	7.72e-05	0.281	GGAAACCCGAAGTC
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	97	110	+	10.6479	7.72e-05	0.281	GGAAACCCGAAGTC
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	97	110	+	10.6479	7.72e-05	0.281	GGAAACCCGAAGTC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	8	21	-	10.6479	7.72e-05	0.281	AAAAAAAGGAAAAA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	22	35	-	10.6479	7.72e-05	0.281	AAAAAAAGGAAAAA
ETV1	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.2364	7.72e-05	0.118	GGCGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	25	36	+	8.77049	7.72e-05	0.115	CCACAGGAAGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	27	38	+	8.77049	7.72e-05	0.115	CCACAGGAAGTG
ELF4	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	4	15	-	8.77049	7.72e-05	0.115	CCACAGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	66	-	8.77049	7.72e-05	0.115	AGGGCGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	66	-	8.77049	7.72e-05	0.115	AGGGCGGAAGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	66	-	8.77049	7.72e-05	0.115	AGGGCGGAAGTG
ELF4	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	69	-	8.77049	7.72e-05	0.115	AGGGCGGAAGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	77	88	-	8.77049	7.72e-05	0.115	CCACAGGAAGTG
ELF4	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	90	-	8.77049	7.72e-05	0.115	AGGGCGGAAGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	79	90	-	8.77049	7.72e-05	0.115	CCACAGGAAGTG
ATF7	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	9	22	-	7.14286	7.72e-05	0.219	CTGAGACGTCATCA
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	12	21	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	5	14	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	5	14	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	18	27	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	18	27	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	27	36	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	27	36	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	18	27	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	18	27	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	28	37	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	28	37	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	34	43	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	34	43	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	34	43	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	43	52	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	68	77	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	63	72	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	78	87	+	10.8902	7.72e-05	0.548	CCAATCAGCG
Gfi1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	79	88	-	10.8902	7.72e-05	0.548	CCAATCAGCG
Klf4	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	1	10	-	10.449	7.72e-05	0.0267	AGGGCGAGGC
Klf4	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	1	10	-	10.449	7.72e-05	0.0267	AGGGCGAGGC
Klf4	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	8	17	-	10.449	7.72e-05	0.0267	TAGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	24	33	-	10.449	7.72e-05	0.0267	TAGGCGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	24	33	-	10.449	7.72e-05	0.0267	TAGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	24	33	-	10.449	7.72e-05	0.0267	TAGGCGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	24	33	-	10.449	7.72e-05	0.0267	TAGGCGTGGC
Klf4	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	98	107	+	10.449	7.72e-05	0.0267	TAGGCGTGGC
TP63	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	22	39	+	-2.60345	7.72e-05	0.952	TACGAGCGGCGGCACGTG
TP63	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	22	39	+	-2.60345	7.72e-05	0.952	TACGAGCGGCGGCACGTG
TP63	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	22	39	+	-2.60345	7.72e-05	0.952	TACGAGCGGCGGCACGTG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	93	103	-	11.449	7.72e-05	0.192	CACAGCTGTGC
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	94	104	+	11.449	7.72e-05	0.192	CACAGCTGTGC
NRF1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	2	12	+	9.70909	7.72e-05	0.0222	CAGGCTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	2	12	+	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	8	18	+	9.70909	7.72e-05	0.0222	AAGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	8	18	+	9.70909	7.72e-05	0.0222	AAGCCGGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	28	38	-	9.70909	7.72e-05	0.0222	ACGCTTGCCCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	46	56	-	9.70909	7.72e-05	0.0222	GCGGCTGCGAG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	46	56	-	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	46	56	-	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	46	56	-	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	46	56	-	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	57	67	+	9.70909	7.72e-05	0.0222	CAGGCTGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	48	58	-	9.70909	7.72e-05	0.0222	CAGGCTGCGCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	63	73	+	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	97	107	-	9.70909	7.72e-05	0.0222	AAGCCGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	103	113	-	9.70909	7.72e-05	0.0222	CAGCAGGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	103	113	-	9.70909	7.72e-05	0.0222	CAGGCTGCGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	27	40	-	5.21429	7.72e-05	0.0744	GGGTGGAATGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	27	40	-	5.21429	7.72e-05	0.0744	GGGTGGAATGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	27	40	-	5.21429	7.72e-05	0.0744	GGGTGGAATGGGGG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	72	89	+	-15.2895	7.72e-05	0.0541	GGGAGGGAGGAGGCCCGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	26	43	-	-15.2895	7.72e-05	0.0541	GGGAGGGAGGAGGCCCGC
Nr2e1	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	26	34	+	11.3065	7.72e-05	1	GGAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	61	69	+	11.3065	7.72e-05	1	GGAAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	61	69	+	11.3065	7.72e-05	1	GGAAGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.0.0	93	101	+	11.3065	7.72e-05	1	GGAAGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:89165673..89165787,-__453.1.1.0	93	101	+	11.3065	7.72e-05	1	GGAAGTCAA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	57	69	+	7.83333	7.72e-05	0.264	GGGGGCGGCCCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	57	69	+	7.83333	7.72e-05	0.264	GGGGGCGGCCCCC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	57	69	+	7.83333	7.72e-05	0.264	GGGGGCGGCCCCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	100	110	+	10.7636	7.72e-05	0.0718	GGCCCCCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	100	110	+	10.7636	7.72e-05	0.0718	GGCCCCCGGCT
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	3	22	-	8.93902	7.72e-05	1	GTTCGCACGCGCGTGCGCAC
TBX19	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	93	112	+	8.93902	7.72e-05	1	GTTCGCACGCGCGTGCGCAC
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	11.6735	7.72e-05	0.422	GACACCTGTC
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	11.6735	7.72e-05	0.422	GACACCTGTC
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	11.6735	7.72e-05	0.422	GACACCTGTC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	14	24	-	10.2364	7.72e-05	0.24	GGTGAGTCAAG
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	58	71	-	8.78689	7.72e-05	0.365	ATTCGCCGGGGAAA
EBF1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	87	100	+	8.78689	7.72e-05	0.365	GGACCCCGGGGAAA
OLIG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	97	106	+	10.0192	7.72e-05	1	GGCATATGTC
GLI2	WILDTYPE__Lincrna.noflip.NA__chr2:87754981..87755095,+__451.1.0.0	60	71	-	10.0862	7.72e-05	0.33	GCGACCATCCAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	8	28	-	9.36735	7.72e-05	0.0212	GGGAGGGGGAGGGGAGTAGGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	20	40	-	9.36735	7.72e-05	0.0212	TGAGGAAGTGGGTCTGGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	45	65	-	9.36735	7.72e-05	0.0212	GAAGCAGCAGAGTTCGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	45	65	-	9.36735	7.72e-05	0.0212	GAAGCAGCAGAGTTCGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	50	70	-	9.36735	7.72e-05	0.0212	AGGGCACGCGCGGCAGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	50	70	-	9.36735	7.72e-05	0.0212	AGGGCACGCGCGGCAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	50	70	-	9.36735	7.72e-05	0.0212	AGGGCACGCGCGGCAGGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	6	26	+	9.36735	7.72e-05	0.0212	TGATATGGGGCGGGGGGAAGA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	8	28	+	9.36735	7.72e-05	0.0212	TGAGGAAGTGGGTCTGGGAAA
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	46	66	+	9.36735	7.72e-05	0.0212	TGAGATTGGAGAGGAAGTGGG
Hoxb5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	25	40	+	10.9221	7.72e-05	1	GCGCTAATGACGTCAT
Hoxb5	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	98	113	+	10.9221	7.72e-05	1	GCGCTAATGACGTCAT
Hoxb5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	2	17	-	10.9221	7.72e-05	1	GCGCTAATGACGTCAT
Hoxb5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	2	17	-	10.9221	7.72e-05	1	GCGCTAATGACGTCAT
Hoxb5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	75	90	-	10.9221	7.72e-05	1	GCGCTAATGACGTCAT
EN2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	19	28	+	10.6102	7.72e-05	1	CACAATTACC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	5	19	-	9.05714	7.73e-05	0.122	CAGGGGCGGGGGCTA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	5	19	-	9.05714	7.73e-05	0.122	CAGGGGCGGGGGCTA
PAX5	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	65	83	+	10.2903	7.73e-05	0.15	CGGGGCGCCCGGGCCGGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	91	109	+	10.2903	7.73e-05	0.15	CGGGGCGCCCGGGCCGGGC
PAX5	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	6	24	-	10.2903	7.73e-05	0.15	CGGGGCGCCCGGGCCGGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	32	50	-	10.2903	7.73e-05	0.15	CGGGGCGCCCGGGCCGGGC
Klf1	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	4	14	+	10.5152	7.73e-05	0.0536	AGCTCCGCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	101	111	-	10.5152	7.73e-05	0.0536	AGCTCCGCCCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	74	83	+	10.4404	7.73e-05	0.0553	CCCCCCGCAT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	74	83	+	10.4404	7.73e-05	0.0553	CCCCCCGCAT
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	63	-	11.0545	7.73e-05	0.0579	CCCCCTACGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	65	76	-	11.0545	7.73e-05	0.0579	AGCCCGCCGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	99	110	-	11.0545	7.73e-05	0.0579	TGCCCGCCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	99	110	-	11.0545	7.73e-05	0.0579	TGCCCGCCGCCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	41	50	+	11.0909	7.73e-05	0.126	CCCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	41	50	+	11.0909	7.73e-05	0.126	CCCGGATGCG
ETV5	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	65	74	-	11.0909	7.73e-05	0.126	CCCGGATGCG
RUNX1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	60	70	+	11.1207	7.73e-05	0.285	GCTTGTGGCTG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	23	36	+	4.88776	7.73e-05	0.377	TGGCATGGCCCCAT
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	37	53	-	-0.818182	7.73e-05	0.514	GAGGACGAAACGACCCG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	89	105	-	-5.89888	7.73e-05	1	CAAAATCAAAGTTCAGT
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	89	105	-	-5.89888	7.73e-05	1	CAAAATCAAAGTTCAGT
USF2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	96	106	-	11.102	7.73e-05	0.158	GCCACGTGGCG
USF2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	19	+	11.102	7.73e-05	0.158	GCCACGTGGCG
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	19	+	11.102	7.73e-05	0.158	GCCACGTGGCG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	69	79	-	10.7931	7.73e-05	0.0772	AAGAGGGAGAA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	69	79	-	10.7931	7.73e-05	0.0772	AAGAGGGAGAA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	7	21	-	9.4697	7.73e-05	0.348	ATGTGTGACTCAGAA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	7	21	-	9.4697	7.73e-05	0.348	ATGTGTGACTCAGAA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	42	56	+	9.4697	7.73e-05	0.348	ATGTGTGACTCAGAA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	42	56	+	9.4697	7.73e-05	0.348	ATGTGTGACTCAGAA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	42	56	+	9.27273	7.73e-05	0.342	TTCCTTTCTCTTCCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	42	56	+	9.27273	7.73e-05	0.342	TTCCTTTCTCTTCCT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	91	103	-	9.51724	7.73e-05	0.0559	TCCCGCGGAGGCT
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	6	19	-	3.30303	7.73e-05	0.379	CGCCTCCCGCGAGG
GLIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	6	19	-	3.30303	7.73e-05	0.379	CGCCTCCCGCGAGG
GLIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	6	19	-	3.30303	7.73e-05	0.379	CGCCTCCCGCGAGG
GLIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	6	19	-	3.30303	7.73e-05	0.379	CGCCTCCCGCGAGG
GLIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	6	19	-	3.30303	7.73e-05	0.379	CGCCTCCCGCGAGG
NR3C1	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	63	79	-	4.73469	7.73e-05	1	GAGAACTTCAAGTTCCA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	61	71	+	9.96364	7.73e-05	0.269	AGCCGGAAGCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	19	38	+	3.27523	7.73e-05	0.0695	CCCCTCCCCGCCCGCTTCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	19	38	+	3.27523	7.73e-05	0.0695	CCCCTCCCCGCCCGCTTCCG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	4	15	-	10.7213	7.73e-05	0.447	AAGGGCGCCTAG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	4	15	-	10.7213	7.73e-05	0.447	AAGGGCGCCTAG
TAL1::TCF3	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	60	71	+	10.6629	7.73e-05	1	AGACCAGATGTG
TAL1::TCF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	44	55	-	10.6629	7.73e-05	1	AGACCAGATGTG
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	44	55	-	10.6629	7.73e-05	1	AGACCAGATGTG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	7	21	-	7.91803	7.73e-05	0.0708	TGCCGCGCCCAGCAT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	26	40	-	7.91803	7.73e-05	0.0708	GGCCCTGCCCATCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	27	41	-	7.91803	7.73e-05	0.0708	GGCCCCACCCCGGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	27	41	-	7.91803	7.73e-05	0.0708	GGCCCCACCCCGGCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	27	41	-	7.91803	7.73e-05	0.0708	GGCCCCACCCCGGCC
Klf12	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	45	59	+	7.91803	7.73e-05	0.0708	GGTCCCGCCCACTGA
Klf12	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	56	70	-	7.91803	7.73e-05	0.0708	GGTCCCGCCCACTGA
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	62	76	-	7.91803	7.73e-05	0.0708	GCCCCCGCCCCCTCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	62	76	-	7.91803	7.73e-05	0.0708	GCCCCCGCCCCCTCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	92	106	+	7.91803	7.73e-05	0.0708	TGCCGCGCCCAGCAT
Myog	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	106	+	11.4694	7.73e-05	0.178	AGCAGCTGTGT
GLIS1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	111	-	-10.1154	7.74e-05	0.329	CCACCCACCACGTGGA
ZNF410	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.1.0	12	28	-	-3.65455	7.74e-05	1	ACCAAACCATCATTTCC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	22	40	+	10.3871	7.74e-05	0.674	TGCCCAGTGGTGCCACCGT
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	21	39	-	10.3871	7.74e-05	0.674	TGCCCAGTGGTGCCACCGT
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	21	39	-	10.3871	7.74e-05	0.674	TGCCCAGTGGTGCCACCGT
Rxra	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	67	80	+	2.59756	7.74e-05	0.51	GATGTTAAAAGTCA
EGR3	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	22	36	+	5.94828	7.74e-05	0.0417	TGCCGCCGCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	24	38	-	5.94828	7.74e-05	0.0417	CCCCGCCCACATCCT
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	24	38	-	5.94828	7.74e-05	0.0417	CCCCGCCCACATCCT
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	29	43	-	5.94828	7.74e-05	0.0417	CCCCCCCCCCTCGCC
EGR3	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	79	93	-	5.94828	7.74e-05	0.0417	TGCCGCCGCCGCCTG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	77	89	+	10.0164	7.74e-05	0.0589	CGCCCACAGGGGC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	42	-	10.0164	7.74e-05	0.0589	AGCCGGAAGGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	32	44	-	10.0164	7.74e-05	0.0589	CGCCCACAGGGGC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	56	68	-	10.0164	7.74e-05	0.0589	GGCCGCTCGGGCG
RARA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	30	47	+	-10.1818	7.74e-05	1	AAGGTGGGTGGGGCAATG
RARA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	30	47	+	-10.1818	7.74e-05	1	AAGGTGGGTGGGGCAATG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.0	25	35	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	25	35	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.2.1	25	35	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	25	35	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	37	47	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	37	47	-	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	68	78	+	9.2069	7.74e-05	0.0862	ATGCCCACGGA
EGR2	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	80	90	+	9.2069	7.74e-05	0.0862	ATGCCCACGGA
Rarg	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	49	64	-	-2.81633	7.74e-05	0.877	CAGGGCCAAAGTTTAA
Rarg	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	78	93	-	-2.81633	7.74e-05	0.877	CAGGGCCAAAGTTTAA
Zfx	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	7	20	+	10.4697	7.74e-05	0.0658	GAGGCCGGAGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	32	45	+	10.4697	7.74e-05	0.0658	GGAGGCCCAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	32	45	+	10.4697	7.74e-05	0.0658	GGAGGCCCAGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	51	64	+	10.4697	7.74e-05	0.0658	CCGGCCCCGGCCCG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	52	65	+	10.4697	7.74e-05	0.0658	CCGGCCCCGGCCCG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	52	65	+	10.4697	7.74e-05	0.0658	CCGGCCCCGGCCCG
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	95	108	-	10.4697	7.74e-05	0.0658	GAGGCCGGAGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	95	108	-	10.4697	7.74e-05	0.0658	GAGGCCGGAGCCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	25	39	-	10.0909	7.74e-05	0.109	TCCCTCCTGCAGAGG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	26	40	-	10.0909	7.74e-05	0.109	GGCCGCCCATTGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	26	40	-	10.0909	7.74e-05	0.109	GGCCGCCCATTGGCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	5	19	+	10.0909	7.74e-05	0.109	AGCCCCACGCAGCGG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	5	19	+	10.0909	7.74e-05	0.109	AGCCCCACGCAGCGG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	5	19	+	10.0909	7.74e-05	0.109	AGCCCCACGCAGCGG
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	5	19	+	10.0909	7.74e-05	0.109	AGCCCCACGCAGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	5	19	+	10.0909	7.74e-05	0.109	AGCCCCACGCAGCGG
ZIC4	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	23	37	+	10.0909	7.74e-05	0.109	GACCCCCCACCCCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	24	38	+	10.0909	7.74e-05	0.109	CGCCGCCCGCCGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	24	38	+	10.0909	7.74e-05	0.109	CGCCGCCCGCCGGCC
ZIC4	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	75	89	+	10.0909	7.74e-05	0.109	GGCCGCCCATTGGCC
JUN	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	26	38	+	9.95918	7.74e-05	0.317	TGTCTGATGTCAC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	47	+	10.9796	7.74e-05	0.0866	TGCCCCAGGGTC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	47	+	10.9796	7.74e-05	0.0866	TGCCCCAGGGTC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	39	50	-	10.9796	7.74e-05	0.0866	TGCCCCAGGGTC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	74	88	-	10.1091	7.74e-05	0.335	ATTAAGTGAAAGGCT
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	74	88	-	10.1091	7.74e-05	0.335	ATTAAGTGAAAGGCT
ETV6	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	26	35	+	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	33	42	+	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	86	95	+	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	86	95	+	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	86	95	+	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	11	20	-	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	11	20	-	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	11	20	-	11.0769	7.74e-05	0.115	GGCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	30	39	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	30	39	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	73	82	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	80	89	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	80	89	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	80	89	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	80	89	-	11.0769	7.74e-05	0.115	GGCGGAAGCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	26	36	+	10.8374	7.74e-05	0.0252	CCAACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	26	36	+	10.8374	7.74e-05	0.0252	CCAACGCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	26	36	+	10.8374	7.74e-05	0.0252	CCAACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	26	36	+	10.8374	7.74e-05	0.0252	CCAACGCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	41	+	10.8374	7.74e-05	0.0252	GCCCTGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	41	+	10.8374	7.74e-05	0.0252	GCCCTGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	70	+	10.8374	7.74e-05	0.0252	GCCCTGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	84	94	-	10.8374	7.74e-05	0.0252	CCAACGCCCCG
SP3	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	91	101	-	10.8374	7.74e-05	0.0252	GCCCTGCCCCC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	16	25	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	16	25	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	22	31	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	14	23	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	25	34	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	45	54	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	47	56	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	59	68	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	61	70	+	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	63	72	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	63	72	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	63	72	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	63	72	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	84	93	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	84	93	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	86	95	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	90	99	-	9.88112	7.74e-05	0.12	GCCGCGCGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	47	64	+	-15.3026	7.74e-05	0.0541	GGAATAAAAGCAGGCTGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	47	64	+	-15.3026	7.74e-05	0.0541	GGAATAAAAGCAGGCTGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	47	64	+	-15.3026	7.74e-05	0.0541	GGAATAAAAGCAGGCTGC
SP1	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	3	13	-	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	23	33	+	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	24	34	+	10.6154	7.74e-05	0.0186	CTTCCGCCCCA
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	66	76	+	10.6154	7.74e-05	0.0186	GGCCCTCCCAT
SP1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	72	82	+	10.6154	7.74e-05	0.0186	TCTCCTCCCTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	74	84	-	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	74	84	-	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	74	84	-	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	74	84	-	10.6154	7.74e-05	0.0186	TCTCCACCCAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	96	106	-	10.6154	7.74e-05	0.0186	CCTCCGCCTCA
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	99	110	-	9.47959	7.74e-05	0.193	AGGCAGGGGTAG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	99	110	-	9.47959	7.74e-05	0.193	AGGCAGGGGTAG
INSM1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	18	29	+	9.47959	7.74e-05	0.193	TTCATGGGGGTT
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	68	79	+	8.66129	7.74e-05	1	GTTATTAATAAC
MEF2A	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	68	79	-	8.66129	7.74e-05	1	GTTATTAATAAC
ZBTB7A	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	16	27	+	10.6143	7.74e-05	0.217	GGCGACAACCTC
Hoxa9	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	10	20	+	10.6842	7.74e-05	1	GCCATAAAGCA
Hoxa9	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	95	105	-	10.6842	7.74e-05	1	GCCATAAAGCA
ESR2	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	9	23	-	10.4808	7.74e-05	0.454	GGGTCAGCGCCCCTT
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	36	50	+	10.4808	7.74e-05	0.454	AGGTCATCCTCTCTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	56	70	+	10.4808	7.74e-05	0.454	AGGTCATCCTCTCTC
ESR2	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	68	82	+	10.4808	7.74e-05	0.454	GGGTCAGCGCCCCTT
TBP	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	45	59	+	10.9583	7.74e-05	0.66	CTTTATAAAGGGCCG
TBP	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	56	70	-	10.9583	7.74e-05	0.66	CTTTATAAAGGGCCG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	33	46	+	5.20408	7.74e-05	0.0744	GATGGGAACGGGGG
HLTF	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	30	39	+	8.65854	7.74e-05	1	GACCTTTTCC
HLTF	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	74	83	+	8.65854	7.74e-05	1	GCCCTTATCT
HLTF	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	99	108	-	8.65854	7.74e-05	1	GACCATATGT
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	94	110	+	2.7541	7.74e-05	0.563	GGTTTAGTGAAAGGGCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	94	110	+	2.7541	7.74e-05	0.563	GGTTTAGTGAAAGGGCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	94	110	+	2.7541	7.74e-05	0.563	GGTTTAGTGAAAGGGCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	94	110	+	2.7541	7.74e-05	0.563	GGTTTAGTGAAAGGGCA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	94	110	+	2.7541	7.74e-05	0.563	GGTTTAGTGAAAGGGCA
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	47	63	-	5.10909	7.75e-05	0.619	TTTTCTGCATCACTGCA
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	47	63	-	5.10909	7.75e-05	0.619	TTTTCTGCATCACTGCA
PAX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	47	63	-	5.10909	7.75e-05	0.619	TTTTCTGCATCACTGCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	10	26	-	3.30909	7.75e-05	0.0322	TTCCCTCCGCCCACCTC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	10	26	-	3.30909	7.75e-05	0.0322	TTCCCTCCGCCCACCTC
SP4	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	27	43	-	3.30909	7.75e-05	0.0322	TTCCCTCCGCCCACCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	72	88	+	3.30909	7.75e-05	0.0322	TTCCCTCCGCCCACCTC
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	72	88	+	3.30909	7.75e-05	0.0322	TTCCCTCCGCCCACCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	71	87	-	3.30909	7.75e-05	0.0322	CCACCCCCGCCTCCCCT
Myc	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	94	103	+	11.6727	7.75e-05	0.497	CCATGTGTGC
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	94	103	+	11.6727	7.75e-05	0.497	CCATGTGTGC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	94	103	+	11.6727	7.75e-05	0.497	CCATGTGTGC
MTF1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	68	81	+	5.92683	7.75e-05	0.501	TTTCCTCCCGCCAC
TP63	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	9	26	-	-2.62069	7.75e-05	0.952	CACGTGTCAGGGCGCGTT
EGR1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	24	37	+	9.98077	7.75e-05	0.0276	GCGCCTCCTCCTGG
EGR1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	34	47	-	9.98077	7.75e-05	0.0276	CTCCTTCCTCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	44	57	-	9.98077	7.75e-05	0.0276	CGCCCGCCGACTTC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	44	57	-	9.98077	7.75e-05	0.0276	CGCCCGCCGACTTC
EGR1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	68	81	+	9.98077	7.75e-05	0.0276	CTCCTTCCTCCTCC
EGR1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	78	91	-	9.98077	7.75e-05	0.0276	GCGCCTCCTCCTGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	92	105	-	9.98077	7.75e-05	0.0276	CTCCTTCCTCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	92	105	-	9.98077	7.75e-05	0.0276	CTCCTTCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	92	105	-	9.98077	7.75e-05	0.0276	CTCCTTCCTCCTCC
Twist2	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	83	92	-	11.541	7.75e-05	1	TCCACATGTC
FIGLA	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	15	24	+	11.4483	7.75e-05	0.859	CACACCTGGG
FIGLA	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	91	100	-	11.4483	7.75e-05	0.859	CACACCTGGG
ELF5	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	53	63	+	11.2	7.75e-05	0.149	CCCCGGAAGCG
ELF5	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	62	-	11.2	7.75e-05	0.149	CCCCGGAAGCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	13	23	-	10.5345	7.75e-05	0.0509	TCGCGGGAATT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	64	74	-	10.5345	7.75e-05	0.0509	TCGCGGGAATT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	64	74	-	10.5345	7.75e-05	0.0509	TCGCGGGAATT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	103	113	-	10.5345	7.75e-05	0.0509	TCGCGGGAATT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	103	113	-	10.5345	7.75e-05	0.0509	TCGCGGGAATT
Vdr	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	35	50	+	3.55738	7.75e-05	0.833	CGGGGCCTCGAGGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	+	2	7.75e-05	1	TGGCAGATGGCA
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	+	2	7.75e-05	1	TGGCAGATGGCA
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	+	2	7.75e-05	1	TGGCAGATGGCA
PKNOX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	+	2	7.75e-05	1	TGGCAGATGGCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	32	45	+	8.43103	7.75e-05	0.038	CACCCCGCCTACCA
KLF14	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	59	72	+	8.43103	7.75e-05	0.038	CACCCCGCCTACCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	62	75	+	8.43103	7.75e-05	0.038	GACCCCTCCCACTG
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	6	18	-	9.62295	7.75e-05	0.0644	CCCCCTGAAGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	25	37	+	9.62295	7.75e-05	0.0644	CGCCGCTGGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	25	37	+	9.62295	7.75e-05	0.0644	CGCCGCTGGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	40	52	+	9.62295	7.75e-05	0.0644	CCCCCTGAAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	40	52	+	9.62295	7.75e-05	0.0644	CCCCCTGAAGGGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	61	73	+	9.62295	7.75e-05	0.0644	CGCCTTTGGGGGC
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	63	75	-	9.62295	7.75e-05	0.0644	CCCCCTGAAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	68	80	-	9.62295	7.75e-05	0.0644	TGCCTGCCAGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	68	80	-	9.62295	7.75e-05	0.0644	TGCCTGCCAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	68	80	-	9.62295	7.75e-05	0.0644	TGCCTGCCAGGGA
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	97	109	+	9.62295	7.75e-05	0.0644	CCCCCTGAAGGGC
KLF16	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	18	28	+	10.2414	7.75e-05	0.0243	CCCACTCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	60	70	-	10.2414	7.75e-05	0.0243	CCCACTCCCTC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	60	70	-	10.2414	7.75e-05	0.0243	CCCACTCCCTC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	32	46	+	10.1034	7.75e-05	0.0165	ACTCCTCCTCTTCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	20	34	-	10.1034	7.75e-05	0.0165	ACCCCTCTCCCCCCG
SP2	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	37	51	+	10.1034	7.75e-05	0.0165	TTTCCTCCCCTCCTG
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	40	54	+	10.1034	7.75e-05	0.0165	ACTCCTCCTCTTCCT
SP2	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	42	56	+	10.1034	7.75e-05	0.0165	AGACCGCCCCTGCGC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	45	59	-	10.1034	7.75e-05	0.0165	ACCCTTCCCCCCTCC
SP2	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	59	73	-	10.1034	7.75e-05	0.0165	AGACCGCCCCTGCGC
SP2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	61	75	-	10.1034	7.75e-05	0.0165	ACTCCTCCTCTTCCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	64	78	-	10.1034	7.75e-05	0.0165	TTTCCTCCCCTCCTG
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	64	78	-	10.1034	7.75e-05	0.0165	TTTCCTCCCCTCCTG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	64	78	-	10.1034	7.75e-05	0.0165	TTTCCTCCCCTCCTG
SP2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	69	83	-	10.1034	7.75e-05	0.0165	ACTCCTCCTCTTCCT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	34	44	-	11.0545	7.75e-05	0.0703	GTGCTTCCTGT
ELK4	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	13	23	+	11.0545	7.75e-05	0.0703	GTGCTTCCTGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	84	94	+	11.0545	7.75e-05	0.0703	GTGCTTCCTGT
E2F3	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	62	79	+	2.43636	7.75e-05	1	AAAACTGGCGCTTTTTTC
Stat6	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	67	81	-	10.6034	7.75e-05	0.832	TGATTCTTCTGAAGT
CTCF	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	5	23	-	8.37705	7.75e-05	0.128	CTGCCAGCTGGGGTCCCAG
CTCF	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	7	25	-	8.37705	7.75e-05	0.128	GGGCCTCTGGGAGTCAGCA
CTCF	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	90	108	+	8.37705	7.75e-05	0.128	GGGCCTCTGGGAGTCAGCA
Ar	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	90	106	-	6.2069	7.75e-05	0.882	GTAAACACCATGTTCCT
E2F6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	27	37	+	10.7586	7.76e-05	0.0772	CGGAGGGAGGC
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	27	37	+	10.7586	7.76e-05	0.0772	CGGAGGGAGGC
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	97	111	+	10.6306	7.76e-05	0.188	GCGGGGGCAGGGGCA
Pparg::Rxra	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	4	18	-	10.6306	7.76e-05	0.188	GCGGGGGCAGGGGCA
Pparg::Rxra	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	27	41	-	10.6306	7.76e-05	0.188	GCGAGGCCGAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	79	93	-	10.6306	7.76e-05	0.188	GCGAGGCCGAGGGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	79	93	-	10.6306	7.76e-05	0.188	GCGAGGCCGAGGGCA
Myb	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	12	21	+	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	34	43	+	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	89	98	+	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	89	98	+	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	94	103	-	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	94	103	-	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	94	103	-	10.9508	7.76e-05	0.905	CCAGCTGCCT
Myb	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	94	103	-	10.9508	7.76e-05	0.905	CCAGCTGCCT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	30	39	-	9.75862	7.76e-05	0.249	ATCACGTCAC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	102	113	+	2.81034	7.76e-05	0.2	CGCCACGTCCCT
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	102	113	+	2.81034	7.76e-05	0.2	CGCCACGTCCCT
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	13	22	-	11.0732	7.76e-05	0.472	ATCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	13	22	-	11.0732	7.76e-05	0.472	ATCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	25	34	-	11.0732	7.76e-05	0.472	ATCACTCCAC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	76	93	-	-15.3158	7.76e-05	0.0542	GAAAAGAAGGCAAGGAAA
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	13	23	-	10.8367	7.76e-05	0.32	CTCCCGGGAAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	38	52	-	10	7.76e-05	0.121	TTCTCACGCGCGCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	38	52	-	10	7.76e-05	0.121	TTCTCACGCGCGCGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	23	37	+	10	7.76e-05	0.121	GTCTCGCGCAAGCGC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	23	37	+	10	7.76e-05	0.121	GTCTCGCGCAAGCGC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	8	20	+	7.81818	7.76e-05	0.264	GCGGGCTTTCCCT
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	22	33	+	8.63636	7.76e-05	0.127	AAACAGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	22	33	+	8.63636	7.76e-05	0.127	AAACAGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	59	70	+	8.63636	7.76e-05	0.127	CGGCCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	59	70	+	8.63636	7.76e-05	0.127	CGGCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	59	70	+	8.63636	7.76e-05	0.127	CGGCCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	59	70	+	8.63636	7.76e-05	0.127	CGGCCGGAAGTT
ELF1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	69	80	-	8.63636	7.76e-05	0.127	CGGCCGGAAGTT
MNX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	10.4776	7.76e-05	1	ACTAATTAGA
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	66	75	+	11.1379	7.77e-05	0.114	AGCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	66	75	+	11.1379	7.77e-05	0.114	AGCGGAAACG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	14	23	-	11.1379	7.77e-05	0.114	AGCGGAAACG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	10	23	+	3.28788	7.77e-05	0.379	CCCCCCCCACCGTG
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	9	19	+	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	11	21	+	9.69091	7.77e-05	0.0222	AAGCGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	11	21	+	9.69091	7.77e-05	0.0222	AAGCGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	6	16	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	6	16	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	6	16	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	6	16	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	6	16	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	58	68	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	83	93	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	83	93	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	83	93	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	83	93	-	9.69091	7.77e-05	0.0222	GCCCGCGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	94	104	-	9.69091	7.77e-05	0.0222	AAGCGGGCGCG
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	70	85	-	10.5276	7.77e-05	1	ATGAATAAATGAGGCC
EBF1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	33	46	+	8.77049	7.77e-05	0.365	CACCCCCGGGGAGA
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	-	10.0638	7.77e-05	0.244	CATGAGTCATA
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	-	10.0638	7.77e-05	0.244	CATGAGTCATA
EGR4	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	6	21	-	10	7.77e-05	0.0403	CCCCGCCGCCGCCCCC
EGR4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	34	49	+	10	7.77e-05	0.0403	CCACGCCCCGGCGTGC
EGR4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	21	36	-	10	7.77e-05	0.0403	CCCCGCCGCCGCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	32	47	-	10	7.77e-05	0.0403	TCCCGCACACGCCGCC
EGR4	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	41	56	-	10	7.77e-05	0.0403	CGGCGCCCCCGCCCCC
EGR4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	66	81	-	10	7.77e-05	0.0403	CCACGCCCCGGCGTGC
NFIA	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	98	107	-	12.2	7.77e-05	1	CTTGCCAAGG
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	55	66	-	10.3077	7.77e-05	0.323	AAACATGGCGTT
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	55	66	-	10.3077	7.77e-05	0.323	AAACATGGCGTT
YY1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	55	66	-	10.3077	7.77e-05	0.323	AAACATGGCGTT
YY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	55	66	-	10.3077	7.77e-05	0.323	AAACATGGCGTT
YY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	55	66	-	10.3077	7.77e-05	0.323	AAACATGGCGTT
BHLHE41	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	+	7.73077	7.77e-05	0.216	CCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	-	7.73077	7.77e-05	0.216	CCCACGTGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	-	7.73077	7.77e-05	0.216	CCCACGTGAC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	-	7.73077	7.77e-05	0.216	CCCACGTGAC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	-	7.73077	7.77e-05	0.216	CCCACGTGAC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	44	64	+	8.6129	7.77e-05	0.187	CTTTTCTTTTTTTTCTTTTTT
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	65	76	-	9.45918	7.77e-05	0.193	TGCCAGGGAGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	65	76	-	9.45918	7.77e-05	0.193	TGCCAGGGAGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.0	65	76	-	9.45918	7.77e-05	0.193	TGCCAGGGAGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	38	52	+	9.04286	7.77e-05	0.122	GGCGGGGAGGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	63	77	-	9.04286	7.77e-05	0.122	GGCGGGGAGGGGGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	23	36	+	5.91489	7.77e-05	0.102	CGCCCCCTCCTGCT
ZIC1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	29	42	-	5.91489	7.77e-05	0.102	GCCGCCCCACAGCG
Crem	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	42	51	+	11.7377	7.77e-05	0.299	TTTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	64	73	-	11.7377	7.77e-05	0.299	TTTGACGTCA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	2	12	+	11.0364	7.77e-05	0.0704	GCATTTCCTGG
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	26	35	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	29	38	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	62	71	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	67	76	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	73	82	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	73	82	-	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	77	86	+	11.0806	7.77e-05	1	CACATTCCGG
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	83	92	+	11.0806	7.77e-05	1	CACATTCCGG
TFE3	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	11	7.77e-05	0.152	AACACGTGAG
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	11	7.77e-05	0.152	AACACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	11	7.77e-05	0.152	AACACGTGAG
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	11	7.77e-05	0.152	AACACGTGAG
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	11	7.77e-05	0.152	AACACGTGAG
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	19	29	+	10.1531	7.77e-05	0.346	GCCCATGTGGT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	51	64	+	2.34545	7.77e-05	0.239	TTATACGGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	51	64	+	2.34545	7.77e-05	0.239	TTATACGGGAAGTT
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	7	20	-	2.34545	7.77e-05	0.239	TTATACGGGAAGTT
SPI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	7	20	-	2.34545	7.77e-05	0.239	TTATACGGGAAGTT
HMBOX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.1	68	77	+	11.0161	7.77e-05	1	CGTAGTTACG
HMBOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.0	68	77	+	11.0161	7.77e-05	1	CGTAGTTACG
HMBOX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	104	113	+	11.0161	7.77e-05	1	CGTAGTTACG
Alx1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	13	29	-	10.8182	7.77e-05	1	CGCTCTAATTGGCCTCG
Arid5a	WILDTYPE__Enhancer.noflip.NA__chr5:71643905..71644019,+__1913.1.0.0	11	24	-	11	7.78e-05	1	CTTATATTGCAACA
BCL6B	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	92	108	-	-17.3	7.78e-05	1	TGCGTGGCAGGGATCAA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	42	56	-	-6.25714	7.78e-05	0.998	CAGGTCCCCAGGACA
Nr2f6(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	42	56	-	-6.25714	7.78e-05	0.998	CAGGTCCCCAGGACA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	42	56	-	-6.25714	7.78e-05	0.998	CAGGTCCCCAGGACA
Nr2f6(var.2)	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	59	73	+	-6.25714	7.78e-05	0.998	CAGGTCCCCAGGACA
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	51	63	-	11	7.78e-05	0.508	CTCAGGTCACCAG
NR2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	51	63	-	11	7.78e-05	0.508	CTCAGGTCACCAG
NR2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	51	63	-	11	7.78e-05	0.508	CTCAGGTCACCAG
RARA::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	97	113	+	9.47959	7.78e-05	0.384	GGTTTAGGGAGGAGTTA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	97	113	+	9.47959	7.78e-05	0.384	GGTTTAGGGAGGAGTTA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	61	80	-	3.25688	7.78e-05	0.0696	CGCCCCCCCGCCCCCCATAC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	39	58	+	3.25688	7.78e-05	0.0696	CGCACACACACACACACCGG
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	39	58	+	3.25688	7.78e-05	0.0696	CGCACACACACACACACCGG
GLI2	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	28	39	+	10.069	7.78e-05	0.33	CCGACCACGCCT
GLI2	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	76	87	-	10.069	7.78e-05	0.33	CCGACCACGCCT
MTF1	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	54	67	-	5.91463	7.78e-05	0.501	TATACACACAGCTC
FOXC2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	42	53	+	11.198	7.78e-05	1	TAAGAAAATAAA
FOXC2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	62	73	-	11.198	7.78e-05	1	TAAGAAAATAAA
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	16	30	-	5.93103	7.78e-05	0.0417	CCACCCCCACCCCCA
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	22	36	-	5.93103	7.78e-05	0.0417	CCACCCCCACCCCCA
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	28	42	-	5.93103	7.78e-05	0.0417	CCACCCCCACCCCCA
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	34	48	-	5.93103	7.78e-05	0.0417	CCACCCCCACCCCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	56	70	+	5.93103	7.78e-05	0.0417	GGACGCCGCCGCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	56	70	+	5.93103	7.78e-05	0.0417	GGACGCCGCCGCGGC
EGR3	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	45	59	-	5.93103	7.78e-05	0.0417	GGACGCCGCCGCGGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	51	65	-	5.93103	7.78e-05	0.0417	CGCCGCCGCCGCCGT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	51	65	-	5.93103	7.78e-05	0.0417	CGCCGCCGCCGCCGT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	51	65	-	5.93103	7.78e-05	0.0417	CGCCGCCGCCGCCGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	51	65	-	5.93103	7.78e-05	0.0417	CGCCGCCGCCGCCGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	72	86	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	72	86	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	72	86	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	72	86	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	100	114	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	100	114	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	100	114	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	100	114	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	100	114	+	5.93103	7.78e-05	0.0417	CAGCTCCCACGCTTT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	1	12	+	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	1	12	+	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	11	22	+	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	10	21	-	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	10	21	-	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	53	64	+	10.6053	7.78e-05	0.0356	GCTCCGCCCCTC
SP8	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	54	65	+	10.6053	7.78e-05	0.0356	GCACCGCCCGCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	63	74	-	10.6053	7.78e-05	0.0356	GCTCCTCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	63	74	-	10.6053	7.78e-05	0.0356	GCTCCTCCCCCC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	48	65	+	-15.3289	7.78e-05	0.0542	GGCGGGAGGGAGGCAGGC
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	50	67	-	-15.3289	7.78e-05	0.0542	GGCGGGAGGGAGGCAGGC
Nfe2l2	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	53	67	+	9.45455	7.78e-05	0.348	ATGCGTGACACGGCT
Nfe2l2	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	48	62	-	9.45455	7.78e-05	0.348	ATGCGTGACACGGCT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	40	53	-	10.4545	7.78e-05	0.066	GCAGGCCCAGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	96	109	+	10.4545	7.78e-05	0.066	CTCGCCGCGCCCTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	21	32	+	9.96721	7.78e-05	0.137	CAACCGGAAGGG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	21	32	+	9.96721	7.78e-05	0.137	CAACCGGAAGGG
EHF	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	69	80	+	9.96721	7.78e-05	0.137	GAGGAGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	79	90	-	9.96721	7.78e-05	0.137	GAGGAGGAAGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	79	90	-	9.96721	7.78e-05	0.137	GAGGAGGAAGTG
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	21	37	+	2.7377	7.78e-05	0.563	CGGTCATCCGGAAGTTA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	21	37	+	2.7377	7.78e-05	0.563	CGGTCATCCGGAAGTTA
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	6	22	-	3.29091	7.78e-05	0.0322	TCCACCCCACCCCCACC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	7	23	-	3.29091	7.78e-05	0.0322	GTGAACACTCCCTCCCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	7	23	-	3.29091	7.78e-05	0.0322	GTGAACACTCCCTCCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	7	23	-	3.29091	7.78e-05	0.0322	GTGAACACTCCCTCCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	24	40	+	3.29091	7.78e-05	0.0322	GTGAACACTCCCTCCCT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	24	40	+	3.29091	7.78e-05	0.0322	GTGAACACTCCCTCCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	40	56	+	3.29091	7.78e-05	0.0322	TCCACCCCACCCCCACC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	40	56	+	3.29091	7.78e-05	0.0322	TCCACCCCACCCCCACC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	46	62	+	3.29091	7.78e-05	0.0322	GGCGCCCCGCCCCGCGA
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	46	62	+	3.29091	7.78e-05	0.0322	GGCGCCCCGCCCCGCGA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	53	69	+	3.29091	7.78e-05	0.0322	CCCGCCCCTCCCCTCGG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	53	69	+	3.29091	7.78e-05	0.0322	CCCGCCCCTCCCCTCGG
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	27	38	-	3.93902	7.78e-05	0.631	CCTCTCGCCAAC
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	27	38	-	3.93902	7.78e-05	0.631	CCTCTCGCCAAC
Tcf12	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	78	+	11.4286	7.78e-05	0.192	CGCAGCTGGCA
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	39	52	+	1.21277	7.78e-05	0.48	GGGTTTGGAGGTTA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	39	52	+	1.21277	7.78e-05	0.48	GGGTTTGGAGGTTA
RXRG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	60	73	-	1.21277	7.78e-05	0.48	GGGTTTGGAGGTTA
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	60	73	-	1.21277	7.78e-05	0.48	GGGTTTGGAGGTTA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.2.0	19	28	+	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.0.0	19	28	+	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.1.0	19	28	+	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.1	19	28	+	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494633..40494747,-__577.1.3.0	19	28	+	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	23	32	-	10.9592	7.78e-05	0.0255	GCTACACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	40	49	+	10.9592	7.78e-05	0.0255	TTCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	40	49	+	10.9592	7.78e-05	0.0255	TTCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	46	55	+	10.9592	7.78e-05	0.0255	TTCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	46	55	+	10.9592	7.78e-05	0.0255	TTCCCACCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	49	58	+	10.9592	7.78e-05	0.0255	ACCACTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	44	53	-	10.9592	7.78e-05	0.0255	TTCCCACCCA
Vdr	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	26	41	+	3.54098	7.78e-05	0.833	CAGGGCGGGGAGTTCG
Vdr	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	26	41	+	3.54098	7.78e-05	0.833	CAGGGCGGGGAGTTCG
Sox1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	36	50	-	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	36	50	-	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	36	50	-	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	36	50	-	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	77	91	+	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	77	91	+	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	77	91	+	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
Sox1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	77	91	+	2.84483	7.78e-05	1	ATCCATTCCAGTGAT
ZEB1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	16	24	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	56	64	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	56	64	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	91	99	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	91	99	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	105	113	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	106	114	+	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	2	10	-	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	16	24	-	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	70	78	-	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	70	78	-	11.3273	7.78e-05	0.456	CTGCACCTG
ZEB1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	91	99	-	11.3273	7.78e-05	0.456	CTGCACCTG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	39	51	+	10	7.78e-05	0.0589	CGCCGCCAGGGGC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	100	112	+	10	7.78e-05	0.0589	CGCCCGCGTGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	3	15	-	10	7.78e-05	0.0589	CGCCCGCGTGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	-	10	7.78e-05	0.0589	CCCCCTCGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	-	10	7.78e-05	0.0589	CCCCCTCGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	-	10	7.78e-05	0.0589	CCCCCTCGCGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	-	10	7.78e-05	0.0589	CCCCCTCGCGGGA
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	64	76	-	10	7.78e-05	0.0589	CGCCGCCAGGGGC
GSC2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	40	49	+	10.6102	7.79e-05	1	CATAATCCCA
GSC2	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	66	75	-	10.6102	7.79e-05	1	CATAATCCCA
GSC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	83	92	+	10.6102	7.79e-05	1	CATAATCCCA
GSC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	83	92	+	10.6102	7.79e-05	1	CATAATCCCA
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	38	55	+	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
IRF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	38	55	+	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
IRF2	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	90	107	+	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
IRF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	8	25	-	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
IRF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	8	25	-	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
IRF2	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	60	77	-	4.62385	7.79e-05	0.626	AGATAGCGAAAGGGGCGT
FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	80	89	+	10.8936	7.79e-05	0.128	AACGGAAATC
Hoxd3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	43	58	+	11.026	7.79e-05	1	CTAGGCCAATTACCGA
Hoxd3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	43	58	+	11.026	7.79e-05	1	CTAGGCCAATTACCGA
GLIS2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	25	38	-	7.80328	7.79e-05	0.186	CTCCCCCCGCGTCC
GLIS2	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	54	-	7.80328	7.79e-05	0.186	CACCCCCCACCCCC
GLIS2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	77	90	+	7.80328	7.79e-05	0.186	CTCCCCCCGCGTCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	31	42	+	10.9694	7.79e-05	0.0866	TGGCCTCGGGGA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	31	42	+	10.9694	7.79e-05	0.0866	TGGCCTCGGGGA
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	33	44	+	10.9694	7.79e-05	0.0866	CACCCCCGGGGA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	43	54	+	10.9694	7.79e-05	0.0866	TGCCCCGCGCCA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	63	74	+	10.9694	7.79e-05	0.0866	TGGCCTCGGGGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	63	74	+	10.9694	7.79e-05	0.0866	TGGCCTCGGGGA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	61	72	-	10.9694	7.79e-05	0.0866	TGCCCCGCGCCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	51	+	9.5	7.79e-05	0.0559	GGCCGCCAGGGGT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	51	+	9.5	7.79e-05	0.0559	GGCCGCCAGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	51	+	9.5	7.79e-05	0.0559	GGCCGCCAGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	51	+	9.5	7.79e-05	0.0559	GGCCGCCAGGGGT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	-	9.5	7.79e-05	0.0559	CGCCCTGCAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	-	9.5	7.79e-05	0.0559	CGCCCTGCAGGGC
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	11	25	-	8.27869	7.79e-05	0.477	GTGAGTCACCACTCC
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	79	93	-	8.27869	7.79e-05	0.477	GTGACTCATCCTTGT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	79	93	-	8.27869	7.79e-05	0.477	GTGACTCATCCTTGT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	34	48	+	8.27869	7.79e-05	0.477	GTGACTCATCCTTGT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	34	48	+	8.27869	7.79e-05	0.477	GTGACTCATCCTTGT
MAF::NFE2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	36	50	+	8.27869	7.79e-05	0.477	GTGAGTCACCACTCC
MSC	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	96	105	+	9.96341	7.79e-05	0.569	AGCAGCTGTG
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	5	14	-	9.96341	7.79e-05	0.569	AGCAGCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	5	14	-	9.96341	7.79e-05	0.569	AGCAGCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	-	9.96341	7.79e-05	0.569	AGCAGCTGGT
MSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	-	9.96341	7.79e-05	0.569	AGCAGCTGGT
Mycn	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	3	10	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	26	33	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	32	39	-	11.6557	7.79e-05	0.281	GCCACATG
Mycn	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	42	49	-	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	62	69	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	66	73	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	94	101	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	94	101	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	94	101	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	94	101	+	11.6557	7.79e-05	0.281	GCCACATG
Mycn	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	105	112	-	11.6557	7.79e-05	0.281	GCCACATG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	29	39	+	10.5962	7.79e-05	0.0187	CTCCCGCCCTG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	95	105	+	10.7455	7.79e-05	0.0718	CGCCCAGGGCT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	10	20	-	10.7455	7.79e-05	0.0718	CGCCCAGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	37	47	-	10.7455	7.79e-05	0.0718	CGCCCAGGGCT
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	34	46	-	10.63	7.79e-05	1	GAAATGCAAATTC
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	55	67	-	1.63265	7.79e-05	0.256	CTGGGACTCCCCT
PAX5	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	17	35	-	10.2742	7.79e-05	0.15	GAAAGCTGCCAAGCAGAGA
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	93	111	-	10.2742	7.79e-05	0.15	CAGCCCGACCGAGCAGGGA
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	93	111	-	10.2742	7.79e-05	0.15	CAGCCCGACCGAGCAGGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	73	83	+	10.7414	7.79e-05	0.0774	GGGAGGGAGTT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	73	83	+	10.7414	7.79e-05	0.0774	GGGAGGGAGTT
Myod1	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	66	+	11.4286	7.79e-05	0.187	AGCAGCTGCGGAC
EVX2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	99	108	+	10.18	7.79e-05	1	CGTCATTAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	18	31	-	5.18367	7.8e-05	0.0744	GGGGGGTTGGGGGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	18	31	-	5.18367	7.8e-05	0.0744	GGGGGGTTGGGGGC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	18	31	-	5.18367	7.8e-05	0.0744	GGGGGGTTGGGGGC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	18	31	-	5.18367	7.8e-05	0.0744	GGGGGGTTGGGGGC
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	45	58	+	5.18367	7.8e-05	0.0744	CGGGCCCTAGTGGG
Ar	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:31288941..31289055,+__1858.1.1.0	94	110	-	6.18966	7.8e-05	0.882	GAGTACAGTGCGTAATA
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	47	58	+	8.7377	7.8e-05	0.115	ACGGCGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	47	58	+	8.7377	7.8e-05	0.115	ACGGCGGAAGTT
ELF4	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	68	-	8.7377	7.8e-05	0.115	ACGGCGGAAGTT
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	11	20	-	10.6429	7.8e-05	0.277	CATCACGAGA
Mitf	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	11	20	-	10.6429	7.8e-05	0.277	CATCACGAGA
Mitf	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	95	104	+	10.6429	7.8e-05	0.277	CATCACGAGA
HES5	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	31	42	-	2.08621	7.8e-05	0.298	GGACACATGTCA
HES5	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	73	84	+	2.08621	7.8e-05	0.298	GGACACATGTCA
RREB1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	1	20	-	3.24771	7.8e-05	0.0697	CCCCACCAAGCACACACCCG
Dmbx1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	14	30	-	11.1053	7.8e-05	1	GGGCCGGGATTAACCTT
Dmbx1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	85	101	+	11.1053	7.8e-05	1	GGGCCGGGATTAACCTT
LEF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	46	60	+	8.30645	7.8e-05	1	GAAGATCAAAAACCC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	30	39	-	9.89362	7.8e-05	0.102	TCCGGAAATA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	30	39	-	9.89362	7.8e-05	0.102	TCCGGAAATA
ELK1	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	44	53	-	9.89362	7.8e-05	0.102	TCCGGAAATA
ELK1	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	62	71	+	9.89362	7.8e-05	0.102	TCCGGAAATA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	25	39	-	10.6216	7.8e-05	0.188	CTGAGAGAAAAGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	25	39	-	10.6216	7.8e-05	0.188	CTGAGAGAAAAGGCA
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	97	106	-	10.4909	7.8e-05	0.655	CCCAGCTGGT
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	97	106	-	10.4909	7.8e-05	0.655	CCCAGCTGGT
PROP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	46	56	-	10.2836	7.8e-05	1	TAATATAATTT
PROP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	46	56	-	10.2836	7.8e-05	1	TAATATAATTT
PROP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	46	56	-	10.2836	7.8e-05	1	TAATATAATTT
PROP1	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	69	79	-	10.2836	7.8e-05	1	AAATTACATTA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.3.0	14	27	+	8.19697	7.8e-05	0.346	AAGCTACGTCATAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	25	38	+	8.19697	7.8e-05	0.346	GGGCCACGTCCTTC
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.3.0	85	98	-	8.19697	7.8e-05	0.346	AAGCTACGTCATAA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	48	+	11	7.8e-05	0.0924	CGCCCGCAGGGG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	48	+	11	7.8e-05	0.0924	CGCCCGCAGGGG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	+	11	7.8e-05	0.0924	GGCCCTGGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	+	11	7.8e-05	0.0924	GGCCCTGGGGCC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	49	60	+	11	7.8e-05	0.0924	TCCCCGCAGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	-	11	7.8e-05	0.0924	GGCCCTGGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	-	11	7.8e-05	0.0924	GGCCCTGGGGCC
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	55	66	-	11	7.8e-05	0.0924	TCCCCGCAGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	92	103	-	11	7.8e-05	0.0924	TGCCTCCAGGTA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	92	103	-	11	7.8e-05	0.0924	TGCCTCCAGGTA
ZNF263	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	9	29	-	9.34694	7.8e-05	0.0213	GAAGCCGGCGAGCGGTGAGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	31	51	-	9.34694	7.8e-05	0.0213	GGGGGCGCAGAGGGAGGGCCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	42	62	-	9.34694	7.8e-05	0.0213	CGAAGCGGATAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	42	62	-	9.34694	7.8e-05	0.0213	CGAAGCGGATAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	42	62	-	9.34694	7.8e-05	0.0213	CGAAGCGGATAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	42	62	-	9.34694	7.8e-05	0.0213	CGAAGCGGATAGGGAGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	42	62	-	9.34694	7.8e-05	0.0213	AGGGGTGGGAAGCAGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	48	68	-	9.34694	7.8e-05	0.0213	GGAGGGGAGAGGAGGAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	48	68	-	9.34694	7.8e-05	0.0213	GGAGGGGAGAGGAGGAAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	52	72	-	9.34694	7.8e-05	0.0213	GGAGGGGAAGGGAGAGGAATC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	52	72	-	9.34694	7.8e-05	0.0213	GGAGGGGAAGGGAGAGGAATC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	68	88	-	9.34694	7.8e-05	0.0213	GGAGGAAGGAAGCAGAGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	68	88	-	9.34694	7.8e-05	0.0213	GGAGGAAGGAAGCAGAGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	62	82	+	9.34694	7.8e-05	0.0213	GGAGGGGGCGGGGGCGGAGTC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	62	82	+	9.34694	7.8e-05	0.0213	GGAGGGGGCGGGGGCGGAGTC
ZNF263	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	86	106	+	9.34694	7.8e-05	0.0213	GAAGCCGGCGAGCGGTGAGGA
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	79	93	-	10.0909	7.8e-05	0.335	CAGGAGAGAGAGTGA
RARA	WILDTYPE__Enhancer.noflip.NA__chr20:25214220..25214334,+__1891.1.0.0	10	27	+	-10.2273	7.8e-05	1	GAGGTGAAATGGTTGGGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	17	30	+	8.41379	7.8e-05	0.0381	CGCCCCTCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	17	30	+	8.41379	7.8e-05	0.0381	CGCCCCTCCCCCCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	17	30	+	8.41379	7.8e-05	0.0381	CGCCCCTCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	29	42	+	8.41379	7.8e-05	0.0381	GGCTCCCCCCACTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	29	42	+	8.41379	7.8e-05	0.0381	GGCTCCCCCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	29	42	+	8.41379	7.8e-05	0.0381	GGCTCCCCCCACTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	29	42	+	8.41379	7.8e-05	0.0381	GGCTCCCCCCACTC
KLF14	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	52	65	-	8.41379	7.8e-05	0.0381	CGCCCCTCCCCCCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	66	79	+	8.41379	7.8e-05	0.0381	GCGCCCGCCCACCC
TBX19	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	74	93	+	8.91463	7.8e-05	1	GCTCTCATTCATGTGTCAAT
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	74	93	+	8.91463	7.8e-05	1	GCTCTCATTCATGTGTCAAT
TBX19	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	74	93	+	8.91463	7.8e-05	1	GCTCTCATTCATGTGTCAAT
Foxd3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	12	23	+	11.087	7.8e-05	1	GTTTGTTATTTC
Foxd3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	12	23	+	11.087	7.8e-05	1	GTTTGTTATTTC
HEY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	+	10.7069	7.8e-05	0.21	GCCACGTGGA
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	+	10.7069	7.8e-05	0.21	GCCACGTGGA
CTCF	WILDTYPE__Lincrna.noflip.NA__chr10:10836857..10836971,-__105.1.0.0	56	74	+	8.36066	7.81e-05	0.128	GCAACACTAGGAGGCAAGG
ETV2	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	53	63	+	10.0492	7.81e-05	0.183	TAGCGGAAGTC
ETV2	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	52	62	-	10.0492	7.81e-05	0.183	TAGCGGAAGTC
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.1.0	10	25	+	-2.85714	7.81e-05	0.877	TGGGCCAGAGGGTGAC
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2627581..2627695,+__1777.1.0.0	10	25	+	-2.85714	7.81e-05	0.877	TGGGCCAGAGGGTGAC
PITX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	98	106	-	11.0385	7.81e-05	1	GCTAATCCG
PITX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	98	106	-	11.0385	7.81e-05	1	GCTAATCCG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	1	11	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	22	32	+	11.0909	7.81e-05	0.0552	TGCCGGCGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	22	32	+	11.0909	7.81e-05	0.0552	TGCCGGCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	12	22	-	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	12	22	-	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	12	22	-	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	12	22	-	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	28	38	-	11.0909	7.81e-05	0.0552	TGCCCACGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	49	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	49	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	30	40	-	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	51	61	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	51	61	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	51	61	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	51	61	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	73	+	11.0909	7.81e-05	0.0552	CGCCCCCGGGG
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	77	87	+	11.0909	7.81e-05	0.0552	TGCCCACGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	100	110	+	11.0909	7.81e-05	0.0552	GGCCCCCGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	100	110	+	11.0909	7.81e-05	0.0552	GGCCCCCGGCT
MAFK	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	2	16	+	10.8222	7.81e-05	1	AGTTATCAGCAAATA
MAFK	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	2	16	+	10.8222	7.81e-05	1	AGTTATCAGCAAATA
BATF3	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	13	26	-	0.30303	7.81e-05	0.242	GGATGATGTCAACA
BATF3	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	89	102	+	0.30303	7.81e-05	0.242	GGATGATGTCAACA
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	44	56	-	10.5714	7.81e-05	0.577	CCCGGAAACGTGG
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	44	56	-	10.5714	7.81e-05	0.577	CCCGGAAACGTGG
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	44	56	-	10.5714	7.81e-05	0.577	CCCGGAAACGTGG
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	44	56	-	10.5714	7.81e-05	0.577	CCCGGAAACGTGG
PHOX2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	14	24	+	10.92	7.81e-05	1	TAAGGTAATTA
ZBTB18	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	97	109	-	9.34286	7.81e-05	0.749	AGGACAGCTGTTA
MTF1	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	14	27	+	5.90244	7.81e-05	0.501	GCTGCACAGGGCGC
MTF1	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	88	101	-	5.90244	7.81e-05	0.501	GCTGCACAGGGCGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	12	25	+	9.96154	7.81e-05	0.0278	CCCCCACTCCCAGG
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	12	25	+	9.96154	7.81e-05	0.0278	CCCCCACTCCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	54	67	+	9.96154	7.81e-05	0.0278	CTGCCGCCGCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	54	67	+	9.96154	7.81e-05	0.0278	CTGCCGCCGCTGCC
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	17	30	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	17	30	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	56	69	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	56	69	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	56	69	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SPI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	56	69	+	2.32727	7.81e-05	0.239	CGGAAGCGGAAGCG
SP2	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	3	17	+	10.0862	7.81e-05	0.0165	CCCGCGCCCCCGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	23	37	+	10.0862	7.81e-05	0.0165	GTCCCACCCTGTCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	23	37	+	10.0862	7.81e-05	0.0165	GTCCCACCCTGTCAG
SP2	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	25	39	+	10.0862	7.81e-05	0.0165	ACCCCTCCCAGGCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	22	36	-	10.0862	7.81e-05	0.0165	CCTCCTCCCCGCCGG
SP2	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	26	40	-	10.0862	7.81e-05	0.0165	CCCCTGCCCTCAGCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	49	63	+	10.0862	7.81e-05	0.0165	TGCCCGCCTCTTATA
SP2	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	48	62	-	10.0862	7.81e-05	0.0165	TGCCCGCCTCTTATA
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	79	93	+	10.0862	7.81e-05	0.0165	CCTCCTCCCCGCCGG
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	79	93	+	10.0862	7.81e-05	0.0165	CCTCCTCCCCGCCGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	79	93	+	10.0862	7.81e-05	0.0165	CCTCCTCCCCGCCGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	68	82	-	10.0862	7.81e-05	0.0165	TCCCTGCCCCTGCTG
SP2	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	76	90	-	10.0862	7.81e-05	0.0165	ACCCCTCCCAGGCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	88	102	-	10.0862	7.81e-05	0.0165	CGCCCTCCCCAACGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	99	113	-	10.0862	7.81e-05	0.0165	CCTCCTCCTTCTTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	99	113	-	10.0862	7.81e-05	0.0165	CCTCCTCCTTCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	99	113	-	10.0862	7.81e-05	0.0165	CCTCCTCCTTCTTCC
CDX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.1	4	12	+	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.2.0	4	12	+	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.1.0	4	12	+	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651289..21651403,-__2031.1.0.0	4	12	+	11.0943	7.81e-05	1	GCCATAAAG
CDX1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	10	18	+	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.0.0	95	103	-	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.0	95	103	-	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.1.0	95	103	-	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:21651297..21651411,+__1738.1.2.1	95	103	-	11.0943	7.81e-05	1	GCCATAAAG
CDX1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	97	105	-	11.0943	7.81e-05	1	GCCATAAAG
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	22	34	-	9.93878	7.81e-05	0.318	AGGGTGAGGCCAG
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	22	34	-	9.93878	7.81e-05	0.318	AGGGTGAGGCCAG
DBP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	10	21	+	11.0566	7.81e-05	1	AATTGCGTAACT
DBP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	10	21	+	11.0566	7.81e-05	1	AATTGCGTAACT
DBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	10	21	+	11.0566	7.81e-05	1	AATTGCGTAACT
DBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	10	21	+	11.0566	7.81e-05	1	AATTGCGTAACT
DBP	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	16	-	11.0566	7.81e-05	1	AATTGCGTAACT
DBP	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	105	-	11.0566	7.81e-05	1	AATTGCGTAACT
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	54	65	+	9.44898	7.81e-05	0.193	ATTCAGGGGTTG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	54	65	+	9.44898	7.81e-05	0.193	ATTCAGGGGTTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	54	65	+	9.44898	7.81e-05	0.193	ATTCAGGGGTTG
JUND	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	86	96	+	10.0426	7.81e-05	0.244	GCTGACTCAGT
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	86	96	+	10.0426	7.81e-05	0.244	GCTGACTCAGT
JUND	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	19	29	-	10.0426	7.81e-05	0.244	GCTGACTCAGT
ZIC4	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	58	72	-	10.0727	7.81e-05	0.109	CCACCCCCGCTGCCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	65	79	-	10.0727	7.81e-05	0.109	CCCTCCCCGCAGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	65	79	-	10.0727	7.81e-05	0.109	CCCTCCCCGCAGCTC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	4	18	+	10.0727	7.81e-05	0.109	CGCTTCCCGCGGCGT
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	14	28	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	14	28	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	26	40	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	26	40	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	26	40	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	26	40	+	10.0727	7.81e-05	0.109	CCCGCCCCGCCGCTC
ZIC4	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	43	57	+	10.0727	7.81e-05	0.109	CCACCCCCGCTGCCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	47	61	-	9.98485	7.81e-05	0.121	GTCCCGCGCCGCTGG
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	32	46	+	9.98485	7.81e-05	0.121	TTCTCATGAGCTCTG
Gabpa	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	28	38	+	10.6066	7.81e-05	0.0731	CAGGAAGTCGT
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	75	85	+	10.6066	7.81e-05	0.0731	CAGGAAGTCGT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	75	85	+	10.6066	7.81e-05	0.0731	CAGGAAGTCGT
Gabpa	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	68	78	-	10.6066	7.81e-05	0.0731	CCGGAAACAGG
Gabpa	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	77	87	-	10.6066	7.81e-05	0.0731	CAGGAAGTCGT
NR2C2	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	10	24	-	9.02857	7.82e-05	0.122	CTGTGTCAGGGTGCA
NR2C2	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	67	81	+	9.02857	7.82e-05	0.122	AGGGAGCGGAGGTCT
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	9	24	+	-10.1731	7.82e-05	0.329	TGTCCCCCAACGGTAC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	9	24	+	-10.1731	7.82e-05	0.329	TGTCCCCCAACGGTAC
Sox11	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	13	27	+	-14.5286	7.82e-05	1	ACCAATCTCAGGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	20	32	+	9.60656	7.82e-05	0.0644	TCCCCGGCCGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr5:9546152..9546266,+__2516.1.0.0	20	32	-	9.60656	7.82e-05	0.0644	TGCCGGGAAGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	34	46	+	9.60656	7.82e-05	0.0644	CGCCCCAAAGGGC
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	39	51	-	9.60656	7.82e-05	0.0644	GCCCCTGGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	59	71	+	9.60656	7.82e-05	0.0644	AGCCGCCCGGGGA
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	64	76	+	9.60656	7.82e-05	0.0644	GCCCCTGGCGGCG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	69	81	-	9.60656	7.82e-05	0.0644	CGCCCCAAAGGGC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.1	83	95	+	9.60656	7.82e-05	0.0644	TGCCGGGAAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.2.0	83	95	+	9.60656	7.82e-05	0.0644	TGCCGGGAAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.1.0	83	95	+	9.60656	7.82e-05	0.0644	TGCCGGGAAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:9546152..9546266,-__1209.1.0.0	83	95	+	9.60656	7.82e-05	0.0644	TGCCGGGAAGGCG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	22	36	+	7.72857	7.82e-05	0.119	GCCGCCCCCCAGCGT
RREB1	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	4	23	-	3.23853	7.82e-05	0.0698	ACCCCCCACCCATCCCACCC
ELF1	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	19	30	-	8.61818	7.82e-05	0.127	GTACAGGAAGTG
Vdr	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	79	94	-	3.52459	7.82e-05	0.833	GGGGTAATGGGGTACA
EBF1	WILDTYPE__Lincrna.noflip.NA__chr4:79567291..79567405,+__647.1.0.0	62	75	+	8.7541	7.82e-05	0.365	CCTCCCAAAGGAAA
EBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.1.0	93	106	+	8.7541	7.82e-05	0.365	CCTCCCAAAGGAAA
EBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:79567260..79567374,+__646.1.0.0	93	106	+	8.7541	7.82e-05	0.365	CCTCCCAAAGGAAA
EGR3	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	33	47	-	5.91379	7.82e-05	0.0417	CCCCTCCCCCTCAGA
EGR3	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	68	82	+	5.91379	7.82e-05	0.0417	CCCCTCCCCCTCAGA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	64	78	-	5.91379	7.82e-05	0.0417	CCACACCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	64	78	-	5.91379	7.82e-05	0.0417	CCACACCCCCACCCC
Hoxd9	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	79	88	-	10.8056	7.82e-05	1	GCAATAAACA
Alx4	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	74	90	+	10.8182	7.82e-05	1	CGCGCTAATTATAGACG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	48	64	+	3.27273	7.82e-05	0.0323	TAGGACCCGCCCTGGTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	48	64	+	3.27273	7.82e-05	0.0323	TAGGACCCGCCCTGGTC
SP4	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	52	68	+	3.27273	7.82e-05	0.0323	GAAGCCCCGGCCTCGCG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	31	48	-	-15.3553	7.82e-05	0.0542	GGGAGGGAGGCAGCGGCG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	35	52	-	-15.3553	7.82e-05	0.0542	GAAAGGGGGAGAGAAGGG
MAX::MYC	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	55	-	10.1327	7.82e-05	0.346	CGTCACGTGGT
HOXB3	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	9.98	7.82e-05	1	AATAATTAGC
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	29	42	-	3.25758	7.82e-05	0.379	GGCCTCCCACCCAG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	58	71	+	3.25758	7.82e-05	0.379	AACCCCCTACTCCG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	20	34	+	7.88525	7.82e-05	0.0708	AGCCACGTCCCCCAT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	20	34	+	7.88525	7.82e-05	0.0708	AGCCACGTCCCCCAT
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	30	44	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCGTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	30	44	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCGTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	30	44	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCGTC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	30	44	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCGTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	34	48	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	34	48	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	25	39	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	25	39	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	29	43	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	29	43	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	29	43	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	29	43	-	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
Klf12	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	76	90	+	7.88525	7.82e-05	0.0708	CGCCCCGCCCCCAGC
E2F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	69	84	+	0.573171	7.82e-05	1	AAAACTGCCCCATATC
Atoh1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	+	11.2903	7.82e-05	1	ACCATATGCA
E2F1	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	41	52	+	10.7049	7.83e-05	0.447	TTTGGCGGCTAT
E2F1	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	63	74	-	10.7049	7.83e-05	0.447	TTTGGCGGCTAT
E2F1	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	95	106	+	10.7049	7.83e-05	0.447	TTTGGCGGCTAT
PAX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	55	71	+	5.07273	7.83e-05	0.619	GGCCATGCAAGGCTGAA
HOXB13	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	72	81	-	11.1091	7.83e-05	1	TCAATAAAAA
HOXB13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	72	81	-	11.1091	7.83e-05	1	TCAATAAAAA
HOXB13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	72	81	-	11.1091	7.83e-05	1	TCAATAAAAA
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	18	31	+	5.89362	7.83e-05	0.102	GGCACCCCGCGCCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	18	31	+	5.89362	7.83e-05	0.102	GGCACCCCGCGCCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	18	31	+	5.89362	7.83e-05	0.102	GGCACCCCGCGCCG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	18	31	+	5.89362	7.83e-05	0.102	GGCACCCCGCGCCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	86	99	-	5.89362	7.83e-05	0.102	GCCGACCTGCTGCT
T	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	49	64	+	7.5	7.83e-05	1	TAACAGAGAGGTGACA
T	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	51	66	-	7.5	7.83e-05	1	TAACAGAGAGGTGACA
T	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	51	66	-	7.5	7.83e-05	1	TAACAGAGAGGTGACA
T	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	51	66	-	7.5	7.83e-05	1	TAACAGAGAGGTGACA
RARA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	28	45	-	-10.2424	7.83e-05	1	AGGGTCAGTGAGTCAAAT
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	28	45	-	-10.2424	7.83e-05	1	AGGGTCAGTGAGTCAAAT
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	31	42	-	11.0364	7.83e-05	0.0579	CCCCTCCCGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	38	49	-	11.0364	7.83e-05	0.0579	GGCCCCCGGCCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	73	84	+	11.0364	7.83e-05	0.0579	CCCCTCCCGGCG
Gfi1	WILDTYPE__Enhancer.noflip.NA__chr8:39797514..39797628,-__2277.1.0.0	83	92	+	10.878	7.83e-05	0.552	TGAATCACAG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	64	74	-	10.9231	7.83e-05	0.0758	AGCCTGGGGGA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	64	74	-	10.9231	7.83e-05	0.0758	AGCCTGGGGGA
ETV6	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	7	16	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	43	52	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	61	70	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	83	92	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	83	92	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	103	112	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	103	112	+	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	63	72	-	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	94	103	-	11.0385	7.83e-05	0.115	CCAGGAAGTT
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	94	103	-	11.0385	7.83e-05	0.115	CCAGGAAGTT
Mafb	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	52	63	+	11.0899	7.83e-05	0.865	GAAACGCTGAGG
ALX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	34	43	-	10.1881	7.83e-05	1	TTTAATTACA
ALX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	34	43	-	10.1881	7.83e-05	1	TTTAATTACA
NFKB2	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	3	15	+	7.78788	7.83e-05	0.264	AGGGAGCTCCCCA
TBP	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	50	64	+	10.9444	7.83e-05	0.662	CCATAAATAGGGGTC
NFATC3	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	34	43	-	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	90	99	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	90	99	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	90	99	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	90	99	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	96	105	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	96	105	+	10.8889	7.83e-05	1	TGTTTCCACT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	96	105	+	10.8889	7.83e-05	1	TGTTTCCACT
HES7	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	70	81	-	2.7931	7.83e-05	0.2	AGGCGCGAGCCG
HES7	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	-	2.7931	7.83e-05	0.2	GGGCACCTGTCA
HES7	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	+	2.7931	7.83e-05	0.2	GGGCACCTGTCA
HES7	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	34	45	+	2.7931	7.83e-05	0.2	AGGCGCGAGCCG
EHF	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	7	18	-	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	97	108	+	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	97	108	+	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	97	108	+	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	97	108	+	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	97	108	+	9.95082	7.83e-05	0.137	TGCCCGGAAGGA
SREBF1	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	40	49	-	11.061	7.83e-05	0.472	CTCAGCTCAC
SREBF1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	23	32	+	11.061	7.83e-05	0.472	CTCAGCTCAC
ELF5	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	27	37	+	11.1818	7.84e-05	0.149	AAGCGGAAGAA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	104	114	+	11.1818	7.84e-05	0.149	ACCGGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	104	114	+	11.1818	7.84e-05	0.149	ACCGGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	9	19	-	11.1818	7.84e-05	0.149	ACCGGGAAGCA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	9	19	-	11.1818	7.84e-05	0.149	ACCGGGAAGCA
ELF5	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	78	88	-	11.1818	7.84e-05	0.149	AAGCGGAAGAA
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	29	38	-	10.7551	7.84e-05	1	CAAAGGTCAA
Esrrg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	29	38	-	10.7551	7.84e-05	1	CAAAGGTCAA
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	29	38	-	10.7551	7.84e-05	1	CAAAGGTCAA
REST	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	68	88	-	4.71429	7.84e-05	0.233	TCCACAACCAAGGCCTGAGGA
REST	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	68	88	-	4.71429	7.84e-05	0.233	TCCACAACCAAGGCCTGAGGA
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	14	24	+	10.1818	7.84e-05	0.241	CAGTGATTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	14	24	+	10.1818	7.84e-05	0.241	CAGTGATTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	13	23	-	10.1818	7.84e-05	0.241	CAGTGATTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	13	23	-	10.1818	7.84e-05	0.241	CAGTGATTCAG
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	29	39	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	51	61	+	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	54	64	-	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	54	64	-	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	54	64	-	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	54	64	-	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	76	86	-	10.4848	7.84e-05	0.0536	GACTCCGCCCA
Myc	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	28	37	-	11.6364	7.84e-05	0.497	ACACGTGGAT
Myc	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	28	37	-	11.6364	7.84e-05	0.497	ACACGTGGAT
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	34	44	+	10.2241	7.84e-05	0.0245	GCCACTCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	34	44	+	10.2241	7.84e-05	0.0245	GCCACTCCTCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	43	53	-	10.2241	7.84e-05	0.0245	GTAACGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	43	53	-	10.2241	7.84e-05	0.0245	GTAACGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	62	72	+	10.2241	7.84e-05	0.0245	GTAACGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	71	81	-	10.2241	7.84e-05	0.0245	GCCACTCCTCT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	34	45	-	10.6	7.84e-05	0.217	TGCGACCCCAAA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	34	45	-	10.6	7.84e-05	0.217	TGCGACCCCAAA
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	34	45	-	10.6	7.84e-05	0.217	TGCGACCCCAAA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	88	99	-	10.6	7.84e-05	0.217	TGCGACCCCAAA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	88	99	-	10.6	7.84e-05	0.217	TGCGACCCCAAA
GLI2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	52	63	+	10.0517	7.84e-05	0.33	CGGCCCACCCTG
GLI2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	53	64	-	10.0517	7.84e-05	0.33	CGGCCCACCCTG
GLI2	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	62	73	-	10.0517	7.84e-05	0.33	CGGCCCACCCTG
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	28	39	+	10.9839	7.84e-05	0.281	GAGACCACCCCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	18	29	-	10.9839	7.84e-05	0.281	GGGACCACAGAG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	18	29	-	10.9839	7.84e-05	0.281	GGGACCACAGAG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	18	29	-	10.9839	7.84e-05	0.281	GGGACCACAGAG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	18	29	-	10.9839	7.84e-05	0.281	GGGACCACAGAG
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	18	29	-	10.9839	7.84e-05	0.281	GGGACCACAGAG
SP1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	2	12	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	14	24	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	9	19	-	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	9	19	-	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	26	36	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	26	36	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	26	36	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	26	36	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	34	44	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	26	36	-	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	44	54	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	44	54	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE__mrna.flip.sense__chr2:63277906..63278020,+__1061.1.0.0	38	48	-	10.5769	7.84e-05	0.0187	TGCCCTCCCCG
SP1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	42	52	-	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	63	73	+	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	53	63	-	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	FLIPPED__mrna.flip.antisense__chr2:63277906..63278020,-__2752.1.0.0	67	77	+	10.5769	7.84e-05	0.0187	TGCCCTCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	79	89	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	79	89	+	10.5769	7.84e-05	0.0187	CGCCCACCTCC
SP1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	71	81	-	10.5769	7.84e-05	0.0187	GGCCCGCCCTG
SP1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	103	113	-	10.5769	7.84e-05	0.0187	CGCCCACCTCC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	40	49	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	40	49	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	40	49	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	40	49	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	59	-	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	59	-	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	59	-	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	59	-	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	62	71	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	62	71	+	10.9155	7.84e-05	0.168	GCCGGAAGCC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	+	9.98361	7.84e-05	0.0589	AGCCCAGAAGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	101	113	+	9.98361	7.84e-05	0.0589	GCCCCCGGCGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	-	9.98361	7.84e-05	0.0589	CGCCTTCTGGGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	11	21	+	10.5172	7.84e-05	0.0509	GAGCGCGAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	11	21	+	10.5172	7.84e-05	0.0509	GAGCGCGAGGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	11	21	+	10.5172	7.84e-05	0.0509	GAGCGCGAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	11	21	+	10.5172	7.84e-05	0.0509	GAGCGCGAGGG
RUNX1	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	45	55	-	11.1034	7.84e-05	0.285	CATTGTGGTCT
RUNX1	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	60	70	+	11.1034	7.84e-05	0.285	CATTGTGGTCT
ELF4	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	63	74	+	8.72131	7.84e-05	0.115	GGCCCGGAAGGA
ELF4	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	3	14	-	8.72131	7.84e-05	0.115	GGCCCGGAAGGA
PBX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.0.0	2	13	+	10.602	7.84e-05	1	TAACCAATCATT
PBX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:49449566..49449680,+__1626.1.1.0	2	13	+	10.602	7.84e-05	1	TAACCAATCATT
PBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	4	15	+	10.602	7.84e-05	1	AAACCAATCATT
PBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	4	15	+	10.602	7.84e-05	1	AAACCAATCATT
PBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.0	4	15	+	10.602	7.84e-05	1	AAACCAATCATT
PBX1	FLIPPED__mrna.flip.antisense__chr3:49449566..49449680,-__2824.1.0.0	102	113	-	10.602	7.84e-05	1	TAACCAATCATT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	18	33	+	9.98182	7.84e-05	0.0407	TCCCGCCCCTCCCTCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	21	38	-	-15.3684	7.84e-05	0.0542	GGGCGGGGCGAAGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	21	38	-	-15.3684	7.84e-05	0.0542	GGGCGGGGCGAAGGAGGC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	19	28	+	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	19	28	+	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	19	28	+	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	19	28	-	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	19	28	-	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	19	28	-	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	19	28	-	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	89	98	+	9.23636	7.84e-05	0.254	GACACGCGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	89	98	+	9.23636	7.84e-05	0.254	GACACGCGAT
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	25	40	-	-10.1923	7.84e-05	0.329	GCACCGCCCACCATGC
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	25	40	-	-10.1923	7.84e-05	0.329	GCACCGCCCACCATGC
GLIS1	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	75	90	+	-10.1923	7.84e-05	0.329	GCACCGCCCACCATGC
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	4	18	+	10.6126	7.84e-05	0.188	GTGGGGCAGGAGGAA
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	47	61	+	10.6126	7.84e-05	0.188	ATGGGGCAGGGGTTT
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	87	101	+	10.6126	7.84e-05	0.188	TTGGGGCAGAGCTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	87	101	+	10.6126	7.84e-05	0.188	TTGGGGCAGAGCTGA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	14	28	-	10.6126	7.84e-05	0.188	TTGGGGCAGAGCTGA
Pparg::Rxra	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	54	68	-	10.6126	7.84e-05	0.188	ATGGGGCAGGGGTTT
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	88	101	+	8.18182	7.85e-05	0.346	CGGACACGTCATTC
ETV2	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	70	80	+	10.0328	7.85e-05	0.183	TGCCGGAAGTA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	4	17	+	10.8654	7.85e-05	0.224	TGGTTCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	4	17	+	10.8654	7.85e-05	0.224	TGGTTCTGAGTCAC
JUN(var.2)	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	38	51	+	10.8654	7.85e-05	0.224	AAACAATGACTAAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	46	59	-	10.8654	7.85e-05	0.224	TGGTTCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	46	59	-	10.8654	7.85e-05	0.224	TGGTTCTGAGTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	64	77	-	10.8654	7.85e-05	0.224	AAACAATGACTAAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	64	77	-	10.8654	7.85e-05	0.224	AAACAATGACTAAC
HNF4G	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	29	43	+	10.4808	7.85e-05	0.341	CAAGCGCAAAGGGCG
HNF4G	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	19	33	-	10.4808	7.85e-05	0.341	GGGGGGGAAAGGCCC
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	52	66	-	10.4808	7.85e-05	0.341	CGGGGCCAGGGGCCG
HNF4G	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	72	86	-	10.4808	7.85e-05	0.341	CAAGCGCAAAGGGCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	93	107	-	10.4808	7.85e-05	0.341	CGGGGCCAGGGGCCG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	64	80	+	9.45918	7.85e-05	0.384	AGTTGATGCCGAGCGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	64	80	+	9.45918	7.85e-05	0.384	AGTTGATGCCGAGCGCA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	47	60	-	5.16327	7.85e-05	0.0744	CAGGCCCTCAGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	47	60	-	5.16327	7.85e-05	0.0744	CAGGCCCTCAGGGA
SPIC	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	23	36	+	10.6197	7.85e-05	0.284	CAACTGAGGAGGTA
SPIC	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	81	94	-	10.6197	7.85e-05	0.284	CAACTGAGGAGGTA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	68	79	-	10.2414	7.85e-05	0.365	GAGACCCCCTAG
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	76	88	-	10.4918	7.85e-05	0.359	TTGGCTGCCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	27	39	+	10.4918	7.85e-05	0.359	TTGGCTGCCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	27	39	+	10.4918	7.85e-05	0.359	TTGGCTGCCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	27	39	+	10.4918	7.85e-05	0.359	TTGGCTGCCTCCC
MEF2B	WILDTYPE__Lincrna.flip.sense__chr11:65266436..65266550,+__192.1.0.0	48	59	+	6.30909	7.85e-05	1	TCTATAAATACG
MEF2B	FLIPPED__Lincrna.flip.antisense__chr11:65266436..65266550,-__2636.1.0.0	56	67	-	6.30909	7.85e-05	1	TCTATAAATACG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	7	17	+	9.17241	7.85e-05	0.0862	CTGCCTACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	8	18	-	9.17241	7.85e-05	0.0862	CTGCCTACGCC
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	8	18	-	9.17241	7.85e-05	0.0862	CTGCCTACGCC
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	8	18	-	9.17241	7.85e-05	0.0862	CTGCCTACGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	64	74	+	9.17241	7.85e-05	0.0862	GCGCACACGCG
EGR2	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	97	107	+	9.17241	7.85e-05	0.0862	CTGCCTACGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	98	108	-	9.17241	7.85e-05	0.0862	CTGCCTACGCC
NFAT5	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	8	17	+	10.871	7.85e-05	1	AGTTTCCATA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	20	33	+	8.39655	7.85e-05	0.0382	TGCCCCGCCCTTGT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	97	110	-	8.39655	7.85e-05	0.0382	TGCCCCGCCCTTGT
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	97	110	-	8.39655	7.85e-05	0.0382	TGCCCCGCCCTTGT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.0.0	18	28	+	10.813	7.85e-05	0.0255	CACCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	18	28	+	10.813	7.85e-05	0.0255	CACCCGCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	41	51	+	10.813	7.85e-05	0.0255	CTCACGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	41	51	+	10.813	7.85e-05	0.0255	CTCACGCCCCG
SP3	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	102	112	+	10.813	7.85e-05	0.0255	CACCCGCCCTC
SP3	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	16	26	-	10.813	7.85e-05	0.0255	CACCCGCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	30	40	-	10.813	7.85e-05	0.0255	CACCCGCCCCG
SP3	FLIPPED__mrna.flip.antisense__chr4:40058390..40058504,-__2755.1.0.0	87	97	-	10.813	7.85e-05	0.0255	CACCCGCCCTC
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	14	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	14	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	26	35	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	26	35	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	55	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	55	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	55	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
ETV1	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	66	+	11.1636	7.85e-05	0.118	GCCGGAAGGA
HOXC13	WILDTYPE__Lincrna.noflip.NA__chr11:62622801..62622915,-__185.1.0.0	89	99	-	10.3548	7.85e-05	1	GTTCGTAAAAT
FOXP1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	89	103	+	10.7606	7.85e-05	0.362	GTGGAATAAACAAAT
FOXP1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	12	26	-	10.7606	7.85e-05	0.362	GTGGAATAAACAAAT
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	28	42	-	10.7606	7.85e-05	0.362	GAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	59	73	-	10.7606	7.85e-05	0.362	GAAAAAAAAAAAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	59	73	-	10.7606	7.85e-05	0.362	GAAAAAAAAAAAAAG
RORA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	41	50	-	11.6067	7.85e-05	0.973	GACGAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	41	50	-	11.6067	7.85e-05	0.973	GACGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	41	50	-	11.6067	7.85e-05	0.973	GACGAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	41	50	-	11.6067	7.85e-05	0.973	GACGAGGTCA
MAFG	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	32	52	+	9.5	7.86e-05	1	ATATGGCTGCAGCAGCGAATT
MAFG	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	63	83	-	9.5	7.86e-05	1	ATATGGCTGCAGCAGCGAATT
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	62	77	+	3.5082	7.86e-05	0.833	GAGGTCGCCGCGGTCG
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	62	77	+	3.5082	7.86e-05	0.833	GAGGTCGCCGCGGTCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ETV4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	11.2931	7.86e-05	0.126	GGCGGAAGTG
ELF3	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	39	51	-	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	64	76	+	7.86207	7.86e-05	0.178	GTGACGGAAGTGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	89	101	+	7.86207	7.86e-05	0.178	GAACCGGAAGCGT
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	89	101	+	7.86207	7.86e-05	0.178	GAACCGGAAGCGT
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	89	101	+	7.86207	7.86e-05	0.178	GAACCGGAAGCGT
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	89	101	+	7.86207	7.86e-05	0.178	GAACCGGAAGCGT
EOMES	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	40	52	-	10.8902	7.86e-05	1	AAGGTGTCAAGCA
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	40	52	-	10.8902	7.86e-05	1	AAGGTGTCAAGCA
RARA(var.2)	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	50	-	2.70492	7.86e-05	0.563	GGGTCAAGGGGCGGGCG
RARA(var.2)	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	65	81	+	2.70492	7.86e-05	0.563	GGGTCAAGGGGCGGGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	16	32	-	3.25455	7.86e-05	0.0324	GCGGCTCCGCCCAGCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	59	75	-	3.25455	7.86e-05	0.0324	GCGGCTCCGCCCAGCCG
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	+	10.9592	7.86e-05	0.0866	CGCCCCGCGGGA
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	+	10.9592	7.86e-05	0.0866	CGCCCCGCGGGA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	35	46	+	10.9592	7.86e-05	0.0866	TGGCGCAGGGCA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	42	53	+	10.9592	7.86e-05	0.0866	GGCCCTGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	42	53	+	10.9592	7.86e-05	0.0866	GGCCCTGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	30	41	-	10.9592	7.86e-05	0.0866	GGCCCTGGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	30	41	-	10.9592	7.86e-05	0.0866	GGCCCTGGGGCC
TFAP2C	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	69	80	-	10.9592	7.86e-05	0.0866	TGGCGCAGGGCA
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	-	10.9592	7.86e-05	0.0866	CGCCCCGCGGGA
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	-	10.9592	7.86e-05	0.0866	CGCCCCGCGGGA
CTCF	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	38	56	-	8.34426	7.86e-05	0.128	CCACCCCGAGGGGTCAGGG
CTCF	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	59	77	+	8.34426	7.86e-05	0.128	CCACCCCGAGGGGTCAGGG
ZIC3	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	13	27	+	7.71429	7.86e-05	0.119	TCCGCCCCGCAGAGG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	18	32	-	7.71429	7.86e-05	0.119	GCCCTCCCCTTGGGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	18	32	-	7.71429	7.86e-05	0.119	GCCCTCCCCTTGGGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	18	32	-	7.71429	7.86e-05	0.119	GCCCTCCCCTTGGGT
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	18	32	-	7.71429	7.86e-05	0.119	GCCCTCCCCTTGGGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	26	40	-	7.71429	7.86e-05	0.119	CGCCTCCTGCTGGAC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	26	40	-	7.71429	7.86e-05	0.119	CGCCTCCTGCTGGAC
ZIC3	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	88	102	-	7.71429	7.86e-05	0.119	TCCGCCCCGCAGAGG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	91	101	-	11.0727	7.86e-05	0.0554	ACCCGCAGGCC
Hoxc9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	52	64	+	10.7778	7.86e-05	1	TTCTGTAAATCAT
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	14	32	+	10.2581	7.86e-05	0.15	GAGCTCATGGGGGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	14	32	+	10.2581	7.86e-05	0.15	GAGCTCATGGGGGCGGGGC
PAX5	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	37	55	+	10.2581	7.86e-05	0.15	GCGGCCAGCCAAGCGCAGG
PAX5	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	89	107	+	10.2581	7.86e-05	0.15	CGAGGCGGTAGAGCGGAGA
PAX5	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	8	26	-	10.2581	7.86e-05	0.15	CGAGGCGGTAGAGCGGAGA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	28	-	10.2581	7.86e-05	0.15	CCGAGCGGGGAGGCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	28	-	10.2581	7.86e-05	0.15	CCGAGCGGGGAGGCGGGGC
PAX5	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	60	78	-	10.2581	7.86e-05	0.15	GCGGCCAGCCAAGCGCAGG
NFKB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	7	19	+	7.77273	7.86e-05	0.264	CGGGGCCTTCCCG
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	7	19	+	7.77273	7.86e-05	0.264	CGGGGCCTTCCCG
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	5	14	-	9.05455	7.86e-05	1	TAATTCATTA
PAX7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	5	14	-	9.05455	7.86e-05	1	TAATTCATTA
PAX7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	5	14	-	9.05455	7.86e-05	1	TAATTCATTA
PAX7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	5	14	-	9.05455	7.86e-05	1	TAATTCATTA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	14	28	+	5.89655	7.86e-05	0.0417	CCCCGCCTGCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	14	28	+	5.89655	7.86e-05	0.0417	CCCCGCCTGCGCCTG
EGR3	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	2	16	-	5.89655	7.86e-05	0.0417	CCCCGCCTGCGCCTG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	63	77	-	5.89655	7.86e-05	0.0417	AGCCGCCGCCGCTAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	63	77	-	5.89655	7.86e-05	0.0417	AGCCGCCGCCGCTAC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	63	77	-	5.89655	7.86e-05	0.0417	AGCCGCCGCCGCTAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	63	77	-	5.89655	7.86e-05	0.0417	AGCCGCCGCCGCTAC
EGR3	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	99	113	+	5.89655	7.86e-05	0.0417	CCCCGCCTGCGCCTG
EGR3	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	87	101	-	5.89655	7.86e-05	0.0417	CCCCGCCTGCGCCTG
NR2C2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	13	27	+	9.01429	7.86e-05	0.122	CGGCGGCGGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	74	88	+	9.01429	7.86e-05	0.122	CGAGGTGAGGGACCG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	32	49	+	-15.3816	7.86e-05	0.0542	CGGTGGAGGCGAGGCAGG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	57	67	+	10.2	7.86e-05	0.242	ATTGACTCACC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	57	67	+	10.2	7.86e-05	0.242	ATTGACTCACC
FOSL1	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	48	58	-	10.2	7.86e-05	0.242	ATTGACTCACC
Pou2f3	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	4	19	+	10.2805	7.87e-05	1	CTTGATGCATATTCAA
Pou2f3	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	96	111	-	10.2805	7.87e-05	1	CTTGATGCATATTCAA
STAT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	89	99	-	10.1636	7.87e-05	0.396	GCTCTGGGAAA
STAT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	89	99	-	10.1636	7.87e-05	0.396	GCTCTGGGAAA
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	17	28	-	9.43878	7.87e-05	0.193	GGGCTGGGGCAG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	17	28	-	9.43878	7.87e-05	0.193	GGGCTGGGGCAG
EHF	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	35	46	+	9.93443	7.87e-05	0.137	GACCCGGATGTG
EHF	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	80	-	9.93443	7.87e-05	0.137	GACCCGGATGTG
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	23	37	+	9.9697	7.87e-05	0.122	CGCTCACGAGGTCGC
PLAG1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	49	62	-	5.15306	7.87e-05	0.0744	GCGGGTTTATGGGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	53	66	+	5.15306	7.87e-05	0.0744	GCGGGTTTATGGGG
E2F4	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	13	23	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	38	48	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	45	55	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	37	47	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	37	47	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	37	47	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	37	47	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	48	58	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	48	58	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	48	58	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	48	58	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	48	58	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	57	67	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	60	70	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	73	83	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	92	102	-	10.5	7.87e-05	0.0509	GCGCGGGGGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	104	114	+	10.5	7.87e-05	0.0509	GCGCGGGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	66	78	-	9.59016	7.87e-05	0.0644	CCCCCGCCAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	66	78	-	9.59016	7.87e-05	0.0644	CCCCCGCCAGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	81	93	-	9.59016	7.87e-05	0.0644	CGCCTTCTGGGCT
Klf12	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	38	52	+	7.86885	7.87e-05	0.0711	GGGGACGCCCACTTG
Klf12	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	52	66	-	7.86885	7.87e-05	0.0711	GAACCCGCCCCAAAC
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	11.623	7.87e-05	0.333	GCCACGTGAC
Npas2	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	11.623	7.87e-05	0.333	GCCACGTGAC
GLIS1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	42	57	-	-10.2115	7.87e-05	0.329	TTTCCGCCCGCTACGT
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	58	73	+	-10.2115	7.87e-05	0.329	TTTCCGCCCGCTACGT
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	69	83	+	10.0727	7.87e-05	0.335	AGAAAGAGAGAGAAG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	69	83	+	10.0727	7.87e-05	0.335	AGAAAGAGAGAGAAG
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	97	111	+	10.0727	7.87e-05	0.335	AGAAAGAGAGAGAAG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	97	111	+	10.0727	7.87e-05	0.335	AGAAAGAGAGAGAAG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	40	54	-	10.069	7.87e-05	0.0166	TTTCCACCTTCCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	40	54	-	10.069	7.87e-05	0.0166	TTTCCACCTTCCCCC
SP2	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	60	74	+	10.069	7.87e-05	0.0166	CTTCCGCCCTTCTCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	51	65	-	10.069	7.87e-05	0.0166	ATCCCACCCACCAGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	51	65	-	10.069	7.87e-05	0.0166	ATCCCACCCACCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	51	65	-	10.069	7.87e-05	0.0166	ATCCCACCCACCAGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	51	65	-	10.069	7.87e-05	0.0166	ATCCCACCCACCAGC
SP2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	69	83	+	10.069	7.87e-05	0.0166	AACCCGCCTCCACTC
TBX2	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	100	110	-	11.0182	7.87e-05	1	AGGGTGTGATG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	5	15	+	11.0182	7.87e-05	1	AGGGTGTGATG
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	5	15	+	11.0182	7.87e-05	1	AGGGTGTGATG
NFIX	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	104	112	+	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	37	45	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	37	45	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	104	112	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	104	112	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	104	112	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	104	112	-	10.4681	7.87e-05	0.758	GCTGCCAAC
NFIX	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	104	112	-	10.4681	7.87e-05	0.758	GCTGCCAAC
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	43	52	+	11.0172	7.87e-05	0.124	GCCGGAAGAG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	88	97	+	11.0172	7.87e-05	0.124	CCCGGAAGCT
ELK3	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	92	101	+	11.0172	7.87e-05	0.124	CCCGGAAGCT
ELK3	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	23	-	11.0172	7.87e-05	0.124	CCCGGAAGCT
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	23	-	11.0172	7.87e-05	0.124	CCCGGAAGCT
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.0172	7.87e-05	0.124	TCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	63	72	-	11.0172	7.87e-05	0.124	GCCGGAAGAG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	63	72	-	11.0172	7.87e-05	0.124	GCCGGAAGAG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	63	72	-	11.0172	7.87e-05	0.124	GCCGGAAGAG
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	63	72	-	11.0172	7.87e-05	0.124	GCCGGAAGAG
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
ELK3	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.0172	7.87e-05	0.124	AGCGGAAGCG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	5	15	-	10.7069	7.87e-05	0.0774	CCGCGGGAAGC
E2F6	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	47	57	-	10.7069	7.87e-05	0.0774	CCGCGGGAAGC
E2F6	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	58	68	+	10.7069	7.87e-05	0.0774	CCGCGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	65	75	+	10.7069	7.87e-05	0.0774	CCGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	65	75	+	10.7069	7.87e-05	0.0774	CCGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	65	75	+	10.7069	7.87e-05	0.0774	CCGCGGGAGGG
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	65	75	+	10.7069	7.87e-05	0.0774	CCGCGGGAGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	100	110	+	10.7069	7.87e-05	0.0774	CCGCGGGAGGG
MTF1	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	36	49	-	5.87805	7.87e-05	0.501	GTTGCACAAGGTCC
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	15	27	+	9.46552	7.87e-05	0.0559	CCCCCGCCCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	26	38	+	9.46552	7.87e-05	0.0559	TCCCGCGGAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	26	38	+	9.46552	7.87e-05	0.0559	TCCCGCGGAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	26	38	+	9.46552	7.87e-05	0.0559	TCCCGCGGAGGCG
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	88	100	-	9.46552	7.87e-05	0.0559	CCCCCGCCCGGCA
MLXIPL	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	+	11.2879	7.87e-05	0.297	CTCACGTGTT
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	-	11.2879	7.87e-05	0.297	CTCACGTGTT
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	-	11.2879	7.87e-05	0.297	CTCACGTGTT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	-	11.2879	7.87e-05	0.297	CTCACGTGTT
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	-	11.2879	7.87e-05	0.297	CTCACGTGTT
KLF16	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	51	61	+	10.2069	7.87e-05	0.0246	ATCCCGCCCCT
KLF16	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	54	64	-	10.2069	7.87e-05	0.0246	ATCCCGCCCCT
SP8	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	27	38	+	10.5921	7.87e-05	0.0359	GCCACACCCAAA
SP8	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	67	+	10.5921	7.87e-05	0.0359	GCCCCTCCCCAC
SP8	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	46	57	-	10.5921	7.87e-05	0.0359	GCCCCTCCCCAC
SP8	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	48	59	-	10.5921	7.87e-05	0.0359	GCCCCTCCCCAC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	77	88	-	10.5921	7.87e-05	0.0359	GCCACACCCAAA
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	77	88	-	10.5921	7.87e-05	0.0359	GCCACACCCAAA
ERG	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	8	17	+	11.2545	7.87e-05	0.142	AGCGGAAATC
ERG	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	38	47	+	11.2545	7.87e-05	0.142	ACAGGAAATA
ERG	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	32	41	-	11.2545	7.87e-05	0.142	CCCGGAAGTA
ERG	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	68	77	+	11.2545	7.87e-05	0.142	CCCGGAAGTA
ERG	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	68	77	-	11.2545	7.87e-05	0.142	ACAGGAAATA
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	98	107	-	11.2545	7.87e-05	0.142	AGCGGAAATC
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	98	107	-	11.2545	7.87e-05	0.142	AGCGGAAATC
NFKB1	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	37	49	-	1.59184	7.88e-05	0.256	AGGGGCCGCCCCT
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	55	65	-	11.3091	7.88e-05	0.721	CGCCACTCCAC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	55	65	-	11.3091	7.88e-05	0.721	CGCCACTCCAC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	55	65	-	11.3091	7.88e-05	0.721	CGCCACTCCAC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	70	80	-	11.3091	7.88e-05	0.721	CGCCACTCCAC
SOX21	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	11	25	-	0.938776	7.88e-05	1	AGCAATAGCAGAGCT
SOX21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	11	25	-	0.938776	7.88e-05	1	AGCAATAGCAGAGCT
Nr1h3::Rxra	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	73	91	-	10.3548	7.88e-05	0.674	TGGACGGAAGTCACTTCTG
ZIC1	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	11	24	+	5.87234	7.88e-05	0.102	CCCCCCCCCCCGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	33	46	+	5.87234	7.88e-05	0.102	CCCCCCCCCCCGCG
ZIC1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	46	59	+	5.87234	7.88e-05	0.102	CCCCCCCCCCCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	56	69	-	5.87234	7.88e-05	0.102	CCCCCCCCCCCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	91	104	-	5.87234	7.88e-05	0.102	CCCCCCCCCCCGCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	41	54	+	9.94231	7.88e-05	0.028	CTTCCTCCTCCTTC
BCL6B	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	48	64	-	-17.3857	7.88e-05	1	CGCATGCGCGGGATCCC
BCL6B	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	51	67	+	-17.3857	7.88e-05	1	CGCATGCGCGGGATCCC
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	44	57	+	5.82895	7.88e-05	0.56	CATCCAGCTGGTGA
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	44	57	-	5.82895	7.88e-05	0.56	TCACCAGCTGGACG
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	44	57	-	5.82895	7.88e-05	0.56	TCACCAGCTGGACG
Rarb	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	14	29	+	-4.89655	7.88e-05	1	TAGGGGAAATAGGTTA
Rarb	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	86	101	-	-4.89655	7.88e-05	1	TAGGGGAAATAGGTTA
STAT3	WILDTYPE__Antisense.noflip.NA__chr3:123304323..123304437,+__543.1.0.0	38	48	-	10.8163	7.88e-05	0.324	CTGATGGGAAG
Rarg(var.2)	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	85	101	+	-6.49091	7.88e-05	1	AAGGTCAGACACTGACA
HSF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	98	110	-	10.4756	7.88e-05	1	GTCTGGCAAGTTC
Tcf12	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	21	31	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	26	36	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	51	61	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	51	61	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	68	78	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	89	99	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	94	104	-	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	11	21	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	16	26	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	79	89	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.0.0	82	92	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.1.0	82	92	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
Tcf12	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	84	94	+	11.4082	7.88e-05	0.192	CACAGCTGAAA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	6	16	+	9.67273	7.88e-05	0.0224	GCGCTCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	6	16	+	9.67273	7.88e-05	0.0224	GCGCTCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	18	28	+	9.67273	7.88e-05	0.0224	CCGTCTGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	25	35	+	9.67273	7.88e-05	0.0224	GCGCATGTCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	22	32	-	9.67273	7.88e-05	0.0224	GCCTCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	22	32	-	9.67273	7.88e-05	0.0224	GCCTCTGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	43	53	-	9.67273	7.88e-05	0.0224	GAGGGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	43	53	-	9.67273	7.88e-05	0.0224	GAGGGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	71	81	-	9.67273	7.88e-05	0.0224	GCGCTCGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	71	81	-	9.67273	7.88e-05	0.0224	GCGCTCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	83	93	+	9.67273	7.88e-05	0.0224	GCCTCTGCGCA
NRF1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	75	85	-	9.67273	7.88e-05	0.0224	GCCTCTGCGCA
NRF1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	87	97	-	9.67273	7.88e-05	0.0224	CCGTCTGCGCC
KLF13	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	12	29	-	4.10345	7.88e-05	0.335	GCAGCACGCCTCTTCCTT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	11	31	-	9.32653	7.88e-05	0.0214	GGAGGGGGAGGGGGCGGACAC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	40	60	-	9.32653	7.88e-05	0.0214	GGAAGTGGAGAAGCGAGGAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	40	60	-	9.32653	7.88e-05	0.0214	GGAAGTGGAGAAGCGAGGAGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	59	79	-	9.32653	7.88e-05	0.0214	AAGGGAGACGGAGCTGAAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	59	79	-	9.32653	7.88e-05	0.0214	AAGGGAGACGGAGCTGAAGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	67	87	-	9.32653	7.88e-05	0.0214	GAGGCTGTGGGGGAAGTAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	67	87	-	9.32653	7.88e-05	0.0214	GAGGCTGTGGGGGAAGTAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	67	87	-	9.32653	7.88e-05	0.0214	GAGGCTGTGGGGGAAGTAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	67	87	-	9.32653	7.88e-05	0.0214	GAGGCTGTGGGGGAAGTAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	67	87	-	9.32653	7.88e-05	0.0214	GAGGCTGTGGGGGAAGTAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	9	29	+	9.32653	7.88e-05	0.0214	GGAGGAGCCTTGGCTGGGGAC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	9	29	+	9.32653	7.88e-05	0.0214	GGAGGAGCCTTGGCTGGGGAC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	34	54	+	9.32653	7.88e-05	0.0214	GGGAAAGGAGGAACTGAAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	34	54	+	9.32653	7.88e-05	0.0214	GGGAAAGGAGGAACTGAAAGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	90	110	+	9.32653	7.88e-05	0.0214	AATGGCGAGGGGGGAGGTAAG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	29	42	-	10.4242	7.88e-05	0.0662	GTACCCACGGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	29	42	-	10.4242	7.88e-05	0.0662	GTACCCACGGCCTC
T	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	12	27	-	7.48077	7.88e-05	1	CGGCACCCACGTGCGG
T	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	88	103	+	7.48077	7.88e-05	1	CGGCACCCACGTGCGG
PKNOX2	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	55	66	+	2.5082	7.88e-05	0.644	TGCTATCTGTCA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.0.0	51	70	-	3.21101	7.88e-05	0.0701	CCCCCCTTCAGCACCCCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433556..219433670,+__1564.1.1.0	51	70	-	3.21101	7.88e-05	0.0701	CCCCCCTTCAGCACCCCTGC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	90	109	-	3.21101	7.88e-05	0.0701	CCCCCCTTCAGCACCCCTGC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	90	109	-	3.21101	7.88e-05	0.0701	CCCCCCTTCAGCACCCCTGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	25	38	-	7.77049	7.88e-05	0.186	CGCCCCCCCCGCCG
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	25	38	-	7.77049	7.88e-05	0.186	CGCCCCCCCCGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	25	38	-	7.77049	7.88e-05	0.186	CGCCCCCCCCGCCG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	25	38	-	7.77049	7.88e-05	0.186	CGCCCCCCCCGCCG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	66	83	+	-15.3947	7.88e-05	0.0542	GGCAGGGAAGGAGCAGGA
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	84	94	-	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	84	94	-	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	45	55	+	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	45	55	+	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	45	55	+	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	45	55	+	10.9091	7.89e-05	0.394	CAGCGCCATTT
YY2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	45	55	+	10.9091	7.89e-05	0.394	CAGCGCCATTT
SCRT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	88	102	-	6.7541	7.89e-05	0.947	CTGACACAGGTGTCT
SCRT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	88	102	-	6.7541	7.89e-05	0.947	CTGACACAGGTGTCT
NHLH1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	77	86	-	10.6034	7.89e-05	0.143	AGCAGATGCT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	90	99	+	10.6034	7.89e-05	0.143	AACAGCTGCA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	90	99	+	10.6034	7.89e-05	0.143	AACAGCTGCA
ZIC4	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	60	74	-	10.0545	7.89e-05	0.109	GCGCGCCTGCTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	76	-	10.0545	7.89e-05	0.109	TCCTCCCCGCGGGCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	76	-	10.0545	7.89e-05	0.109	TCCTCCCCGCGGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	37	51	+	10.0545	7.89e-05	0.109	CACCCCCCACCGTAC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	37	51	+	10.0545	7.89e-05	0.109	CACCCCCCACCGTAC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	45	59	+	10.0545	7.89e-05	0.109	GCGCGCCTGCTGCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	45	59	+	10.0545	7.89e-05	0.109	GCGCGCCTGCTGCGC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	45	59	+	10.0545	7.89e-05	0.109	GCGCGCCTGCTGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	45	59	+	10.0545	7.89e-05	0.109	GCGCGCCTGCTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:44580865..44580979,-__1678.1.1.0	91	105	+	10.0545	7.89e-05	0.109	GGCTCCCCGCTGAAC
Arntl	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	6	15	+	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	6	15	-	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	24	33	+	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	29	38	+	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	21	30	-	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	41	50	-	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	55	64	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	55	64	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	55	64	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	55	64	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	65	74	+	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	85	94	+	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	77	86	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	82	91	-	11.0492	7.89e-05	0.285	GCGCACGTGC
Arntl	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	100	109	+	11.0492	7.89e-05	0.285	GGACACGTGA
Arntl	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	100	109	-	11.0492	7.89e-05	0.285	GCGCACGTGC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	39	50	+	2.01724	7.89e-05	0.298	ACACACGTGCTT
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	39	50	+	2.01724	7.89e-05	0.298	ACACACGTGCTT
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	25	35	+	11.1702	7.89e-05	0.265	GATGATTCATA
FOS	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	36	46	-	11.1702	7.89e-05	0.265	ATTGACTCATT
FOS	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	56	66	+	11.1702	7.89e-05	0.265	ATTGACTCATT
FOS	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	49	59	-	11.1702	7.89e-05	0.265	ATTGACTCATT
FOS	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	69	79	+	11.1702	7.89e-05	0.265	ATTGACTCATT
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	15	24	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	25	34	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	25	34	+	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	30	39	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	24	33	-	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	40	49	-	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	63	72	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	63	72	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	63	72	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	63	72	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	72	81	+	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	81	90	-	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	81	90	-	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	85	94	-	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	85	94	-	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	85	94	-	10.4312	7.89e-05	0.0553	ACCCCGCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	102	111	-	10.4312	7.89e-05	0.0553	CCACCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	102	111	-	10.4312	7.89e-05	0.0553	CCACCCCCAG
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	52	65	+	3.22727	7.89e-05	0.379	GGCCTCCTACAAAT
GLIS3	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	90	103	-	3.22727	7.89e-05	0.379	GGCCTCCTACAAAT
Hic1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	96	104	+	11.0577	7.89e-05	0.516	ATGCCAGCA
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	105	113	+	11.0577	7.89e-05	0.516	ATGCCAGCA
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	105	113	+	11.0577	7.89e-05	0.516	ATGCCAGCA
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	84	92	-	11.0577	7.89e-05	0.516	ATGCCAGCA
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	84	92	-	11.0577	7.89e-05	0.516	ATGCCAGCA
Hic1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	102	110	-	11.0577	7.89e-05	0.516	ATGCCAGCA
CEBPD	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	+	11.25	7.89e-05	0.805	CTTGCGTAAT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	58	68	-	10.7273	7.89e-05	0.0718	AGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	58	68	-	10.7273	7.89e-05	0.0718	AGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	63	73	-	10.7273	7.89e-05	0.0718	AGCTCCAGGCG
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	80	91	+	10.9677	7.89e-05	0.281	GGGCCCACCCAG
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	90	101	+	10.9677	7.89e-05	0.281	GCACCCACCCCA
Gabpa	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	15	25	+	10.5902	7.89e-05	0.0731	CCGGAAGGTCC
Gabpa	WILDTYPE__Antisense.noflip.NA__chr7:1609698..1609812,+__790.1.0.0	16	26	-	10.5902	7.89e-05	0.0731	CCGGAAGGTGG
Gabpa	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	29	39	+	10.5902	7.89e-05	0.0731	CCGGAAGGTGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	76	86	-	10.5902	7.89e-05	0.0731	CCGGAAGGTGG
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	76	86	-	10.5902	7.89e-05	0.0731	CCGGAAGGTGG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	59	70	+	8.58182	7.89e-05	0.127	TTACAGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	59	70	+	8.58182	7.89e-05	0.127	TTACAGGAAGTG
STAT1	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	45	55	-	10.1455	7.89e-05	0.396	TCTCCAGGAAT
STAT1	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	60	70	+	10.1455	7.89e-05	0.396	TCTCCAGGAAT
Gmeb1	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	16	32	-	10.6316	7.89e-05	0.668	GTCGTGACGCACGAGCT
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	30	46	-	10.6316	7.89e-05	0.668	ACGCGTGCGCACCACGC
Gmeb1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	30	46	-	10.6316	7.89e-05	0.668	ACGCGTGCGCACCACGC
TCF7L2	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	38	51	-	10.8182	7.89e-05	1	AAACTTGAAAAGCA
TCF7L2	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	43	56	-	10.8182	7.89e-05	1	AAACTTGAAAAGCA
TCF7L2	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	59	72	+	10.8182	7.89e-05	1	AAACTTGAAAAGCA
TCF7L2	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	64	77	+	10.8182	7.89e-05	1	AAACTTGAAAAGCA
E2F1	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	71	82	+	10.6885	7.89e-05	0.447	CTAGGCGCGAAT
CENPB	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	20	34	+	10.1346	7.89e-05	0.913	CCCGCCTCCTCCGCC
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	60	73	+	0.257576	7.89e-05	0.242	GAGTGACGTCTCCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	60	73	+	0.257576	7.89e-05	0.242	GAGTGACGTCTCCG
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	+	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	+	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	+	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	+	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	-	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	+	10.9592	7.89e-05	0.152	GTCACGCGAC
TFE3	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	-	10.9592	7.89e-05	0.152	GTCACGCGAC
Sox17	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	61	69	+	11.4831	7.9e-05	1	CTTATTGTC
Sox17	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	46	54	-	11.4831	7.9e-05	1	CTTATTGTC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	+	9.96721	7.9e-05	0.0589	AGCCCTGCAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	+	9.96721	7.9e-05	0.0589	AGCCCTGCAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	28	40	-	9.96721	7.9e-05	0.0589	GGCCGGTGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	28	40	-	9.96721	7.9e-05	0.0589	GGCCGGTGGGGCG
TP73	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	60	77	+	8.13462	7.9e-05	0.667	GTCATGCTCGCACATGTG
SP4	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	27	43	+	3.23636	7.9e-05	0.0324	GGAGTCCCGCCCACCGG
SP4	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	22	38	-	3.23636	7.9e-05	0.0324	CTCTCCCCGCCTCCACA
SP4	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	41	57	-	3.23636	7.9e-05	0.0324	GAAGTCCCGCCCAGCCT
SP4	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	58	74	+	3.23636	7.9e-05	0.0324	GAAGTCCCGCCCAGCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	63	79	-	3.23636	7.9e-05	0.0324	GCCCCCCCGCCCCCCGT
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	5	21	+	2.68852	7.9e-05	0.563	GGGCCATTCCGAGTTGA
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	-	11.8269	7.9e-05	0.298	AGCACGTGTG
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	-	11.8269	7.9e-05	0.298	AGCACGTGTG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	11.8269	7.9e-05	0.298	GGCACGTGTT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	11.8269	7.9e-05	0.298	GGCACGTGTT
HLF	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	65	76	-	11.3559	7.9e-05	1	TCTTACGTAAAC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	36	46	-	10.5577	7.9e-05	0.0189	CCTCCTCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	36	46	-	10.5577	7.9e-05	0.0189	CCTCCTCCCAT
SP1	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	82	92	-	10.5577	7.9e-05	0.0189	CCTCCACCCCA
NRL	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	21	31	-	10.6538	7.9e-05	0.823	AACGTGCTGAT
CEBPB	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	40	49	+	11.36	7.9e-05	0.822	CTTGTGCAAC
ELF4	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	58	69	+	8.70492	7.9e-05	0.115	TTCCAGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	84	95	+	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	84	95	+	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	84	95	+	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	84	95	+	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	84	95	+	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	20	31	-	8.70492	7.9e-05	0.115	GAGCAGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	46	57	-	8.70492	7.9e-05	0.115	TTCCAGGAAGCG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	46	57	-	8.70492	7.9e-05	0.115	TTCCAGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	46	57	-	8.70492	7.9e-05	0.115	TTCCAGGAAGCG
NFATC1	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	7	16	+	10.439	7.9e-05	0.956	ATTTTCCAAG
NFATC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	32	41	+	10.439	7.9e-05	0.956	ATTTTCCAAG
NFATC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	32	41	+	10.439	7.9e-05	0.956	ATTTTCCAAG
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	34	43	-	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	74	83	-	10.439	7.9e-05	0.956	ATTTTCCAAG
NFATC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	90	99	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	90	99	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	90	99	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	90	99	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	96	105	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	96	105	+	10.439	7.9e-05	0.956	TGTTTCCACT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	96	105	+	10.439	7.9e-05	0.956	TGTTTCCACT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	11	24	+	8.37931	7.9e-05	0.0384	GGCCCCGGCCCCCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	27	40	-	8.37931	7.9e-05	0.0384	GGCTACGCCCAGAG
KLF14	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	35	48	-	8.37931	7.9e-05	0.0384	GGCCCCGGCCCCCA
KLF14	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	67	80	+	8.37931	7.9e-05	0.0384	GGCCCCGGCCCCCA
EGR3	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	54	68	+	5.87931	7.9e-05	0.0418	CACCGCCTCCTCCCT
EGR3	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	47	61	-	5.87931	7.9e-05	0.0418	CACCGCCTCCTCCCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	95	109	-	5.87931	7.9e-05	0.0418	AGCCGCCGCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	95	109	-	5.87931	7.9e-05	0.0418	AGCCGCCGCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	95	109	-	5.87931	7.9e-05	0.0418	AGCCGCCGCCGCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	95	109	-	5.87931	7.9e-05	0.0418	AGCCGCCGCCGCCCG
NFYB	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	5	19	-	10.2308	7.91e-05	0.209	CCCTCAGCCAATTGG
FEV	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	11.0962	7.91e-05	0.148	AACGGAAGCA
FEV	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	11.0962	7.91e-05	0.148	AACGGAAGCA
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	11.0962	7.91e-05	0.148	AACGGAAGCA
ZIC3	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	12	26	-	7.7	7.91e-05	0.119	GCAGCCCCGCTGCTT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	14	28	-	7.7	7.91e-05	0.119	CCCCACCCGCCGTCT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	43	57	-	7.7	7.91e-05	0.119	GCCCTCCCTCGGGGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	43	57	-	7.7	7.91e-05	0.119	GCCCTCCCTCGGGGT
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	54	68	-	7.7	7.91e-05	0.119	CGCCCCCCGGCATGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	54	68	-	7.7	7.91e-05	0.119	CGCCCCCCGGCATGC
ZIC3	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	89	103	+	7.7	7.91e-05	0.119	GCAGCCCCGCTGCTT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	10	27	-	-15.4079	7.91e-05	0.0542	GAGCGGGAGGAGGGAAAC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	70	87	-	-15.4079	7.91e-05	0.0542	GAAAGAAGAGAGGCCAGG
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	100	110	+	11.0862	7.91e-05	0.285	AGCTGTGGTTC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	19	30	+	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	19	30	+	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	19	30	+	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	19	30	+	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	102	113	-	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	102	113	-	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	102	113	-	8.30909	7.91e-05	0.25	AATGACGTCTCC
Creb5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	102	113	-	8.30909	7.91e-05	0.25	AATGACGTCTCC
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	26	36	+	10.9038	7.91e-05	0.0758	GCCCTGAGGCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	39	51	-	10.4754	7.91e-05	0.359	CAGTCTCTCTCCG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	39	51	-	10.4754	7.91e-05	0.359	CAGTCTCTCTCCG
NR2C2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	28	42	+	9	7.91e-05	0.122	GGGGGGGTGGGGTCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	64	78	+	9	7.91e-05	0.122	CGAGAGCGGAGGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	64	78	+	9	7.91e-05	0.122	CGAGAGCGGAGGCCG
NR2C2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	73	87	-	9	7.91e-05	0.122	GGGGGGGTGGGGTCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	93	107	+	9	7.91e-05	0.122	CGAGAGCGGAGGCCG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	48	59	-	10.5714	7.91e-05	0.218	GACGCCCTCCGA
PROX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	13	24	-	8.34545	7.91e-05	1	CACGCCGCCTTG
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	13	24	-	8.34545	7.91e-05	1	CACGCCGCCTTG
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	13	24	-	8.34545	7.91e-05	1	CACGCCGCCTTG
PROX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	13	24	-	8.34545	7.91e-05	1	CACGCCGCCTTG
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	28	42	-	10.4423	7.91e-05	0.456	GGGGCATGCTGGCTC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	88	102	+	10.4423	7.91e-05	0.456	CGGTCACCGTGACAA
ESR2	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	81	95	-	10.4423	7.91e-05	0.456	AGGGCAGCCGGCGCT
TBX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	90	100	+	11	7.91e-05	1	AGGGTGTGAGG
TBX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	90	100	+	11	7.91e-05	1	AGGGTGTGAGG
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	73	88	-	-2.91837	7.91e-05	0.877	AAGGTCAGTGGGTGGG
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	73	88	-	-2.91837	7.91e-05	0.877	AAGGTCAGTGGGTGGG
Rarg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	73	88	-	-2.91837	7.91e-05	0.877	AAGGTCAGTGGGTGGG
Rarg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	73	88	-	-2.91837	7.91e-05	0.877	AAGGTCAGTGGGTGGG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	61	71	+	11.1636	7.91e-05	0.15	ACCCGGAAACC
CTCF	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	43	61	+	8.32787	7.91e-05	0.128	GGACCGCAGGGAGGCGGAA
CTCF	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	38	56	-	8.32787	7.91e-05	0.128	GGACCGCAGGGAGGCGGAA
CTCF	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	59	77	+	8.32787	7.91e-05	0.128	GGACCGCAGGGAGGCGGAA
CTCF	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	54	72	-	8.32787	7.91e-05	0.128	GGACCGCAGGGAGGCGGAA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	75	93	+	8.32787	7.91e-05	0.128	CGGGCAGTAGGGGCCGACT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	75	93	+	8.32787	7.91e-05	0.128	CGGGCAGTAGGGGCCGACT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	82	100	+	8.32787	7.91e-05	0.128	TGACCAATAGGAGACCGTA
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	82	100	+	8.32787	7.91e-05	0.128	TGACCAATAGGAGACCGTA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	32	46	-	7.85246	7.91e-05	0.0713	CAGCACGCCCAGCTC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	32	46	-	7.85246	7.91e-05	0.0713	CAGCACGCCCAGCTC
CLOCK	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	32	41	-	11.0303	7.91e-05	0.585	GACACATGTC
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	-	11.0303	7.91e-05	0.585	GGCACGTGTG
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	-	11.0303	7.91e-05	0.585	GGCACGTGTG
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	-	11.0303	7.91e-05	0.585	TCCACGTGCT
CLOCK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	-	11.0303	7.91e-05	0.585	TCCACGTGCT
CLOCK	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	74	83	+	11.0303	7.91e-05	0.585	GACACATGTC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	69	82	+	10.6056	7.92e-05	0.284	AGAAAGGGAAAGAC
SPIC	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	32	45	-	10.6056	7.92e-05	0.284	AGAAAGGGAAAGAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	26	39	-	10.8462	7.92e-05	0.225	TGAGTATGAATCAT
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	+	10.9818	7.92e-05	0.0924	TGGCCCGAGGCT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	14	25	-	10.9818	7.92e-05	0.0924	CCCCCGCGGCCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	42	53	-	10.9818	7.92e-05	0.0924	AGCCCCAGGGAA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	42	53	-	10.9818	7.92e-05	0.0924	AGCCCCAGGGAA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	42	53	-	10.9818	7.92e-05	0.0924	AGCCCCAGGGAA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	42	53	-	10.9818	7.92e-05	0.0924	AGCCCCAGGGAA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	61	72	-	10.9818	7.92e-05	0.0924	CGCCCCCGGGAA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	61	72	-	10.9818	7.92e-05	0.0924	CGCCCCCGGGAA
TGIF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	76	87	-	7.78899	7.92e-05	0.855	TGACATCTGAAA
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	76	87	-	7.78899	7.92e-05	0.855	TGACATCTGAAA
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	46	+	7.78899	7.92e-05	0.855	TGGCAGCTGCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	5	20	-	9.96364	7.92e-05	0.0409	CCCCGCCCCCTCCCGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	36	51	+	9.96364	7.92e-05	0.0409	CCCCGCCCCCTCCCGC
EGR4	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	51	66	+	9.96364	7.92e-05	0.0409	CTCCGCCCACAGAAAG
EGR4	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	49	64	-	9.96364	7.92e-05	0.0409	CTCCGCCCACAGAAAG
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	98	111	+	8.72131	7.92e-05	0.365	AGTCCCTGGAGGGT
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	98	111	+	8.72131	7.92e-05	0.365	AGTCCCTGGAGGGT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	98	111	+	8.72131	7.92e-05	0.365	AGTCCCTGGAGGGT
TFCP2	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	44	53	-	10.9697	7.92e-05	1	AATCTGGTTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	31	42	+	10.5789	7.92e-05	0.036	GCCCTGCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	31	42	+	10.5789	7.92e-05	0.036	GCCCTGCCCCCA
SP8	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	60	71	+	10.5789	7.92e-05	0.036	GCCCTGCCCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	5	14	+	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	3	12	-	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	15	24	+	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	15	24	+	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	15	24	+	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	28	37	-	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	52	61	+	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	54	63	-	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	54	63	-	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	68	77	-	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	68	77	-	10.9388	7.92e-05	0.0258	TCTCCACCCT
KLF5	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	78	87	+	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	70	79	-	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	103	112	+	10.9388	7.92e-05	0.0258	GCCTCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	105	114	+	10.9388	7.92e-05	0.0258	GCCTCTCCCA
CEBPE	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	-	11.4	7.92e-05	0.729	ATTACGTAAT
CEBPE	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	49	58	+	11.4	7.92e-05	0.729	ATTACGTAAT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	19	30	+	11.0182	7.92e-05	0.0579	CCGCCTCGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	22	33	+	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	22	33	+	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	45	56	-	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	45	56	-	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	59	70	+	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	92	103	+	11.0182	7.92e-05	0.0579	TACCTGGAGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	92	103	+	11.0182	7.92e-05	0.0579	TACCTGGAGGCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	82	93	-	11.0182	7.92e-05	0.0579	TCCCCTAGGCCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	96	-	11.0182	7.92e-05	0.0579	CCGCCTCGGGCA
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	12	21	-	11.6885	7.92e-05	0.299	TGTGACGTCG
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	12	21	-	11.6885	7.92e-05	0.299	TGTGACGTCG
Crem	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	58	67	+	11.6885	7.92e-05	0.299	TGTGACGTCG
Crem	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	58	67	+	11.6885	7.92e-05	0.299	TGTGACGTCG
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	73	82	-	11.6885	7.92e-05	0.299	TGTGACGTCG
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	73	82	-	11.6885	7.92e-05	0.299	TGTGACGTCG
ID4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	21	30	-	11.0492	7.92e-05	0.389	TGCAGCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	21	30	-	11.0492	7.92e-05	0.389	TGCAGCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	67	76	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	67	76	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	98	107	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	98	107	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	98	107	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ID4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	98	107	-	11.0492	7.92e-05	0.389	TGCAGCTGCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	59	73	-	9.95455	7.92e-05	0.122	TCCCCGCGGGCCCAG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	59	73	-	9.95455	7.92e-05	0.122	TCCCCGCGGGCCCAG
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	41	52	+	10.949	7.92e-05	0.0866	CCCCCGCGGGCC
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	71	82	+	10.949	7.92e-05	0.0866	CCCCCGCGGGCC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	36	-	10.949	7.92e-05	0.0866	CCCCCGCGGGCC
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	44	-	10.949	7.92e-05	0.0866	CCCCCGCGGGCC
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	31	43	-	10.9592	7.92e-05	0.513	TCGGGGTCAGAAG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	9.7069	7.92e-05	0.249	CCCACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	9.7069	7.92e-05	0.249	CCCACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	9.7069	7.92e-05	0.249	CCCACGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	9.7069	7.92e-05	0.249	CCCACGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	9.7069	7.92e-05	0.249	CCCACGTGAT
IRF2	WILDTYPE__Antisense.noflip.NA__chr2:135676141..135676255,-__397.1.0.0	10	27	-	4.55963	7.92e-05	0.626	AGAAAAAGAAAGCAAAAG
IRF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	62	79	-	4.55963	7.92e-05	0.626	AGAAAAAGAAAGCAAAAG
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr11:72449313..72449427,-__2303.1.0.0	29	37	+	10.8571	7.92e-05	1	CATGCAAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr11:72449356..72449470,+__2010.1.0.0	35	43	-	10.8571	7.92e-05	1	CATGCAAAT
POU3F4	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	50	58	+	10.8571	7.92e-05	1	CATGCAAAT
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	13	29	+	-3.09091	7.92e-05	0.861	GGGTGAGTTAAAGTTTA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	13	29	+	-3.09091	7.92e-05	0.861	GGGTGAGTTAAAGTTTA
Sox1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	71	85	+	2.75862	7.92e-05	1	TGCACTCGCATTGTG
JDP2	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	1	9	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	27	35	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	27	35	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	28	36	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	52	60	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	58	66	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	58	66	+	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	23	31	-	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	55	63	-	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	73	81	-	9	7.92e-05	0.347	CTGAGTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	73	81	-	9	7.92e-05	0.347	CTGAGTCAT
JDP2	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	106	114	-	9	7.92e-05	0.347	CTGAGTCAT
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	24	37	-	3.21212	7.92e-05	0.379	ACCCCCCCACCGAG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	24	37	-	3.21212	7.92e-05	0.379	ACCCCCCCACCGAG
HEY1	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	-	11.2909	7.93e-05	0.173	TACACGTGAC
MNX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	17	26	+	10.4627	7.93e-05	1	TGTAATTAAG
BATF3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	20	33	+	0.242424	7.93e-05	0.242	CAGTGACATCACCC
BATF3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	38	51	-	0.242424	7.93e-05	0.242	CAGTGACATCACCC
BATF3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	64	77	+	0.242424	7.93e-05	0.242	CAGTGACATCACCC
BATF3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	82	95	-	0.242424	7.93e-05	0.242	CAGTGACATCACCC
HSF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	42	54	-	6.5082	7.93e-05	1	TTCCGGAAAACTC
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	42	54	-	6.5082	7.93e-05	1	TTCCGGAAAACTC
HSF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	42	54	-	6.5082	7.93e-05	1	TTCCGGAAAACTC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	19	36	+	-15.4211	7.93e-05	0.0542	GGAACGGAGCGGGGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	49	66	+	-15.4211	7.93e-05	0.0542	GGCGAGGAGGGAGGCGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	49	66	+	-15.4211	7.93e-05	0.0542	GGCGAGGAGGGAGGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	49	66	+	-15.4211	7.93e-05	0.0542	GGCGAGGAGGGAGGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	49	66	+	-15.4211	7.93e-05	0.0542	GGCGAGGAGGGAGGCGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	13	30	-	-15.4211	7.93e-05	0.0542	CAGAGGGAGGGAGCTAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	13	30	-	-15.4211	7.93e-05	0.0542	CAGAGGGAGGGAGCTAAG
HEY2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	-	10.6897	7.93e-05	0.21	CCCACGTGTC
HEY2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	-	10.6897	7.93e-05	0.21	CCCACGTGTC
HEY2	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	-	10.6897	7.93e-05	0.21	GTCACGTGGG
HEY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	+	10.6897	7.93e-05	0.21	GTCACGTGGG
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	+	10.6897	7.93e-05	0.21	GTCACGTGGG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	+	10.6897	7.93e-05	0.21	GTCACGTGGG
HEY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	+	10.6897	7.93e-05	0.21	GTCACGTGGG
HEY2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	+	10.6897	7.93e-05	0.21	CCCACGTGTC
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	62	71	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	62	71	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	67	76	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	67	76	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	67	76	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	67	76	-	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	51	60	+	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	51	60	+	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	51	60	+	10.7234	7.93e-05	0.94	TGGTGTGAAT
TBR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	51	60	+	10.7234	7.93e-05	0.94	TGGTGTGAAT
NFATC2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	8	14	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	8	14	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	8	14	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	8	14	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	8	14	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr3:171543354..171543468,-__2092.1.0.0	10	16	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	11	17	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	33	39	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	33	39	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	37	43	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr10:9012053..9012167,+__144.1.0.0	37	43	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	37	43	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	42	48	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	42	48	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	49	55	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	53	59	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	62	68	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	68	74	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	68	74	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	72	78	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	72	78	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.0	72	78	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.0.0	72	78	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	75	81	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	82	88	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	82	88	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	90	96	+	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	94	100	+	12.2022	7.93e-05	1	TTTTCCA
DLX6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	15	-	10.4407	7.93e-05	1	CCAATTAA
DLX6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	15	-	10.4407	7.93e-05	1	CCAATTAA
DLX6	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	35	-	10.4407	7.93e-05	1	CCAATTAA
Dlx4	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	68	75	-	10.0531	7.93e-05	1	CCAATTAT
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	11.3611	7.93e-05	1	GTAAACA
FOXP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	11.3611	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	12.9808	7.93e-05	1	GTAAACA
FOXO6	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	12.9808	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	12.4364	7.93e-05	1	GTAAACA
FOXO4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	12.4364	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	11.4237	7.93e-05	1	GTAAACA
FOXD2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	11.4237	7.93e-05	1	GTAAACA
MSX2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	8	15	+	11.2364	7.93e-05	1	GCAATTAA
MSX2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	8	15	+	11.2364	7.93e-05	1	GCAATTAA
MSX2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	64	+	11.2364	7.93e-05	1	GCAATTAA
MSX2	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	64	+	11.2364	7.93e-05	1	GCAATTAA
MSX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	58	-	11.2364	7.93e-05	1	GCAATTAA
MSX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	58	-	11.2364	7.93e-05	1	GCAATTAA
FOXO3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	11	+	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	11	+	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	56	+	9.92424	7.93e-05	1	GTAAACAC
FOXO3	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	65	+	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	85	+	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	85	+	9.92424	7.93e-05	1	GTAAACAC
Nobox	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	75	82	+	11.2391	7.93e-05	1	TAATTGCC
Nobox	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	84	91	+	11.2391	7.93e-05	1	TAATTGCC
Nobox	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	84	91	+	11.2391	7.93e-05	1	TAATTGCC
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	12.9455	7.93e-05	1	GTAAACA
FOXI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	12.9455	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	10	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	10	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	2	8	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	2	8	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	2	8	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	2	8	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	3	9	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	5	11	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	5	11	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	5	11	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	5	11	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	8	14	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	8	14	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	21	27	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	20	26	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	20	26	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	20	26	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	20	26	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	31	37	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	26	32	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	26	32	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	26	32	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	45	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	45	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	36	42	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	38	44	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	55	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	46	52	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	46	52	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	51	57	-	12	7.93e-05	1	GTAAACA
FOXL1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	64	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	54	60	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	67	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	67	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	56	62	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	58	64	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	65	71	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	65	71	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	65	71	-	12	7.93e-05	1	GTAAACA
FOXL1	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	73	79	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	80	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	84	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	84	+	12	7.93e-05	1	GTAAACA
FOXL1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	83	89	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Enhancer.noflip.NA__chr4:69813853..69813967,-__2097.1.0.0	83	89	+	12	7.93e-05	1	GTAAACA
FOXL1	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	83	89	+	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	79	85	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	84	90	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	84	90	-	12	7.93e-05	1	GTAAACA
FOXL1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	88	94	-	12	7.93e-05	1	GTAAACA
FOXL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	100	106	-	12	7.93e-05	1	GTAAACA
FOXD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	11	+	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	11	+	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	56	+	11.82	7.93e-05	1	GTAAACAC
FOXD1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	65	+	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	85	+	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	85	+	11.82	7.93e-05	1	GTAAACAC
DLX6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	+	10.4407	7.93e-05	1	CTAATTAC
DLX6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	+	10.4407	7.93e-05	1	CTAATTAC
DLX6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	80	87	+	10.4407	7.93e-05	1	CCAATTAA
DLX6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	80	87	+	10.4407	7.93e-05	1	CCAATTAA
HOXA5	WILDTYPE__Lincrna.noflip.NA__chr22:27620605..27620719,-__520.1.0.0	46	53	-	10.34	7.93e-05	1	CAGTAATT
HOXA5	WILDTYPE__Lincrna.noflip.NA__chr8:37351349..37351463,-__854.1.0.0	82	89	+	10.34	7.93e-05	1	CAGTAATT
HOXA5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	101	108	+	10.34	7.93e-05	1	CAGTAATT
HOXA5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	101	108	+	10.34	7.93e-05	1	CAGTAATT
FOXO3	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	37	44	-	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	50	57	-	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	78	85	-	9.92424	7.93e-05	1	GTAAACAC
FOXO3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	99	106	-	9.92424	7.93e-05	1	GTAAACAC
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	7	13	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	7	13	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	12	18	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	15	21	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	19	25	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	47	53	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	47	53	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	47	53	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	47	53	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	47	53	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	49	55	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	49	55	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	55	61	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	55	61	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	57	63	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	59	65	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	60	66	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	62	68	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	76	82	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	78	84	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	79	85	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	83	89	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	89	95	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	98	104	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	101	107	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	105	111	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.0.0	108	114	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.1	108	114	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.1.0	108	114	-	12.2022	7.93e-05	1	TTTTCCA
NFATC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444804..38444918,-__1591.1.2.0	108	114	-	12.2022	7.93e-05	1	TTTTCCA
Nobox	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	33	40	-	11.2391	7.93e-05	1	TAATTGCC
Nobox	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	63	-	11.2391	7.93e-05	1	TAATTGCC
Prrx2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	9.80531	7.93e-05	1	CTAATTAG
Prrx2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	9.80531	7.93e-05	1	CTAATTAG
Prrx2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	9.80531	7.93e-05	1	CTAATTAG
Prrx2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	9.80531	7.93e-05	1	CTAATTAG
FOXD1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	37	44	-	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	50	57	-	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	78	85	-	11.82	7.93e-05	1	GTAAACAC
FOXD1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	99	106	-	11.82	7.93e-05	1	GTAAACAC
EN1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	-	10.8983	7.93e-05	1	GTAATTAG
EN1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	-	10.8983	7.93e-05	1	GTAATTAG
JUNB	WILDTYPE__Lincrna.noflip.NA__chr14:56263371..56263485,-__292.1.0.0	20	30	+	10.7143	7.93e-05	0.235	CAGTGACTAAG
NRF1	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	36	46	-	9.63636	7.93e-05	0.0225	CCGCCGGCCCG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	43	53	-	9.63636	7.93e-05	0.0225	CCGCCGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	62	72	+	9.63636	7.93e-05	0.0225	CCGCCGGCCCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	8	20	+	9.44828	7.93e-05	0.0559	GGCCGCCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	8	20	+	9.44828	7.93e-05	0.0559	GGCCGCCAGGGGG
PAX5	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	22	40	+	10.2419	7.93e-05	0.15	GAGCTCACCGGACCAGACC
PAX5	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	92	110	+	10.2419	7.93e-05	0.15	GAGCTCGGCGGGGTGCGGC
PAX5	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	5	23	-	10.2419	7.93e-05	0.15	GAGCTCGGCGGGGTGCGGC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	38	56	-	10.2419	7.93e-05	0.15	GAGCTCACCGGACCAGACC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	38	56	-	10.2419	7.93e-05	0.15	GAGCTCACCGGACCAGACC
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	10	23	+	5.85106	7.93e-05	0.103	CCCCCCCCCCAGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	72	85	+	5.85106	7.93e-05	0.103	CACTCCCTACAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.2414	7.93e-05	0.126	TCCGGAAGCT
XBP1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	36	49	-	9.42308	7.93e-05	0.529	AGTGTGACGTCATG
XBP1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	41	54	-	9.42308	7.93e-05	0.529	AGTGTGACGTCATG
XBP1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	61	74	+	9.42308	7.93e-05	0.529	AGTGTGACGTCATG
XBP1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	66	79	+	9.42308	7.93e-05	0.529	AGTGTGACGTCATG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	-	9.55738	7.93e-05	0.0644	AGCCTACGGGGCG
SP2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	50	64	-	10.0517	7.93e-05	0.0168	CTTCCGCCCACGTCA
Zfx	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	45	58	+	10.4091	7.93e-05	0.0662	GGGGGCGGCGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	33	46	-	10.4091	7.93e-05	0.0662	GGCACAGGGGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	34	47	-	10.4091	7.93e-05	0.0662	GGAGCCCAGCCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	68	81	+	10.4091	7.93e-05	0.0662	GGAGCCCAGCCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	57	70	-	10.4091	7.93e-05	0.0662	GGGGGCGGCGCCTG
RFX5	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	18	33	+	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	82	97	-	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
RFX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	82	97	-	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
RFX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	82	97	-	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
RFX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	82	97	-	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
RFX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	82	97	-	6.25862	7.93e-05	0.366	CGTTGCTAAGGCAGGG
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	42	55	+	2.5122	7.93e-05	0.51	TAGCACAAAGGTCA
Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	42	55	+	2.5122	7.93e-05	0.51	TAGCACAAAGGTCA
EN2	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	20	29	-	10.5763	7.93e-05	1	GCCAATCACC
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	1	11	-	10.0164	7.93e-05	0.183	AGCCGGAAGTT
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	1	11	-	10.0164	7.93e-05	0.183	AGCCGGAAGTT
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.1	21	31	+	10.0164	7.93e-05	0.183	ACCCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.2.0	21	31	+	10.0164	7.93e-05	0.183	ACCCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.1.0	21	31	+	10.0164	7.93e-05	0.183	ACCCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:58329889..58330003,-__244.1.0.0	21	31	+	10.0164	7.93e-05	0.183	ACCCGGAAGTG
ETV2	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	24	34	+	10.0164	7.93e-05	0.183	AGCCGGAAGTT
ETV2	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	35	45	+	10.0164	7.93e-05	0.183	ACCCGGAAGTG
ETV2	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	81	91	-	10.0164	7.93e-05	0.183	AGCCGGAAGTT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	30	46	+	3.21818	7.93e-05	0.0325	CTCGCTCCGCCTCCGGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	30	46	+	3.21818	7.93e-05	0.0325	CTCGCTCCGCCTCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	27	43	-	3.21818	7.93e-05	0.0325	CTGCCCCCTCCCCTCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	47	63	+	3.21818	7.93e-05	0.0325	CTCGCTCCGCCTCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	47	63	+	3.21818	7.93e-05	0.0325	CTCGCTCCGCCTCCGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	54	70	-	3.21818	7.93e-05	0.0325	CGGGAACCGCCCCCTCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	54	70	-	3.21818	7.93e-05	0.0325	CGGGAACCGCCCCCTCC
HES7	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	36	47	+	2.74138	7.93e-05	0.202	AGCCACTTGCCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	39	50	+	8.56364	7.94e-05	0.127	CCGCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	39	50	+	8.56364	7.94e-05	0.127	CCGCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	39	50	+	8.56364	7.94e-05	0.127	CCGCCGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	39	50	+	8.56364	7.94e-05	0.127	CCGCCGGAAGCG
ELF1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	76	-	8.56364	7.94e-05	0.127	CCGCCGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	110	-	8.56364	7.94e-05	0.127	GCAGCGGAAGTC
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	110	-	8.56364	7.94e-05	0.127	GCAGCGGAAGTC
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	+	11.2195	7.94e-05	0.198	ATCACGAGAT
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	+	11.2195	7.94e-05	0.198	ATCACGAGAT
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	45	54	-	11.2195	7.94e-05	0.198	ATCATGTGAG
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.1.0	45	54	-	11.2195	7.94e-05	0.198	ATCATGTGAG
SP1	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	20	30	+	10.5385	7.94e-05	0.0189	GTCCCACCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	24	34	+	10.5385	7.94e-05	0.0189	AGCCCGCCCCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	24	34	+	10.5385	7.94e-05	0.0189	AGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	24	34	+	10.5385	7.94e-05	0.0189	AGCCCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	24	34	+	10.5385	7.94e-05	0.0189	AGCCCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	85	95	-	10.5385	7.94e-05	0.0189	GTCCCACCTTC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	85	95	-	10.5385	7.94e-05	0.0189	GTCCCACCTTC
USF2	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	66	76	-	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
USF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	39	49	+	11.0612	7.94e-05	0.159	CGCAGGTGACT
TFAP4	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	-	10.4364	7.94e-05	0.655	AACAGCTGCG
TFAP4	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	+	10.4364	7.94e-05	0.655	AACAGCTGCG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	13	24	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	13	24	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	13	24	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	13	24	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	14	25	+	10.3788	7.94e-05	0.109	CGGCTTCCGCAG
HINFP	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	14	25	+	10.3788	7.94e-05	0.109	CCAGGTCCGGGC
HINFP	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	10	21	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	24	35	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	18	29	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	18	29	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	18	29	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	18	29	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	30	41	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	33	44	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	33	44	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	33	44	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	33	44	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	33	44	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	23	34	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	41	52	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	32	43	-	10.3788	7.94e-05	0.109	CGGCTTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	34	45	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	34	45	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	39	50	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	39	50	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	65	76	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	72	83	+	10.3788	7.94e-05	0.109	CGGCTTCCGCAG
HINFP	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	63	74	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	71	82	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	74	85	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	74	85	-	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	86	97	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	94	105	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	94	105	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	94	105	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	94	105	+	10.3788	7.94e-05	0.109	GCGCGTGCGCGC
HINFP	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	90	101	-	10.3788	7.94e-05	0.109	CCAGGTCCGGGC
HOXA10	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	30	40	+	10.717	7.94e-05	1	TGCAATAAATA
HOXA10	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	30	40	+	10.717	7.94e-05	1	TGCAATAAATA
SNAI2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	27	35	-	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	34	42	-	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	99	107	-	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	99	107	-	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	68	76	+	11.0698	7.94e-05	0.522	GGCAGGTGA
PPARG	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	84	103	-	6.63333	7.94e-05	1	GTGGAGCAATGTGTCTAATA
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	9.71429	7.94e-05	0.332	ATCACGTGCA
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	8	17	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	22	31	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	22	31	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	22	31	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	30	39	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	22	31	-	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	28	37	-	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	54	63	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	84	93	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	76	85	-	10.422	7.94e-05	0.0553	CTCCCCCCAG
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	101	110	+	10.422	7.94e-05	0.0553	CTCCCCCCAG
CUX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	66	75	+	11.5612	7.94e-05	1	TCATCGATAA
CUX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	66	75	+	11.5612	7.94e-05	1	TCATCGATAA
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	20	30	-	11	7.94e-05	0.0715	GCCCTTCCGGA
ELK4	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	26	36	-	11	7.94e-05	0.0715	TCTTTTCCGGC
ELK4	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	39	49	-	11	7.94e-05	0.0715	GCCCTTCCGGA
ELK4	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	66	76	+	11	7.94e-05	0.0715	GCCCTTCCGGA
ELK4	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	79	89	+	11	7.94e-05	0.0715	TCTTTTCCGGC
POU1F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	43	56	+	10.2414	7.94e-05	1	TTGATGCAGATGAG
POU1F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	43	56	+	10.2414	7.94e-05	1	TTGATGCAGATGAG
MYF6	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	33	+	10.1515	7.94e-05	1	ACCACCTGTT
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.1.0	58	69	+	11.0556	7.94e-05	1	GACTGCAATCAC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.1.0	73	84	-	11.0556	7.94e-05	1	GACTGCAATCAC
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	51	62	-	9.90164	7.94e-05	0.137	AAGGAGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	51	62	-	9.90164	7.94e-05	0.137	AAGGAGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	51	62	-	9.90164	7.94e-05	0.137	AAGGAGGAAGTC
NFE2	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	40	50	-	5.18367	7.94e-05	0.373	GCTGACTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	45	55	-	5.18367	7.94e-05	0.373	GCTGACTCACC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	94	104	-	5.18367	7.94e-05	0.373	GCTGACTCACC
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	94	104	-	5.18367	7.94e-05	0.373	GCTGACTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	26	36	+	10	7.94e-05	0.245	CGTGAGTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	+	10	7.94e-05	0.245	CATGAGTCATT
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	7	17	-	10	7.94e-05	0.245	CGTGAGTCACC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	7	17	-	10	7.94e-05	0.245	CGTGAGTCACC
E2F4	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	12	22	-	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	36	46	+	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
E2F4	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	45	55	-	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
E2F4	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	60	70	+	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	73	83	+	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	93	103	+	10.4828	7.94e-05	0.0509	GGGCGAGAGGG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	45	55	+	11.0545	7.94e-05	0.0554	CGCCTGCAGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	53	63	-	11.0545	7.94e-05	0.0554	AGCCTAGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	53	63	-	11.0545	7.94e-05	0.0554	AGCCTAGGGCG
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	33	+	9.90244	7.94e-05	0.569	GACAGCTGGC
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	33	+	9.90244	7.94e-05	0.569	GACAGCTGGC
MSC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	38	+	9.90244	7.94e-05	0.569	GACAGCTGGC
MSC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	34	-	9.90244	7.94e-05	0.569	GACAGCTGGC
Stat5a::Stat5b	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	4	14	+	11.1224	7.94e-05	0.4	ATTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	32	42	-	11.1224	7.94e-05	0.4	ATTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	32	42	-	11.1224	7.94e-05	0.4	ATTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	32	42	-	11.1224	7.94e-05	0.4	ATTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	32	42	-	11.1224	7.94e-05	0.4	ATTTCCTGGAG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	61	73	+	7.82759	7.94e-05	0.178	CTACCGGAAGTTT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	61	73	+	7.82759	7.94e-05	0.178	CTACCGGAAGTTT
NFKB1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	21	33	+	1.55102	7.94e-05	0.256	CGGGGCGTCACCG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	44	56	+	1.55102	7.94e-05	0.256	CGGGGCGTCACCG
NFKB1	WILDTYPE__Antisense.noflip.NA__chr1:36043343..36043457,-__69.1.0.0	59	71	+	1.55102	7.94e-05	0.256	CGGGGCTTCGCCT
NFKB1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	59	71	-	1.55102	7.94e-05	0.256	CGGGGCGTCACCG
NFKB1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	82	94	-	1.55102	7.94e-05	0.256	CGGGGCGTCACCG
RORA	WILDTYPE__Lincrna.flip.sense__chr8:93889830..93889944,-__881.1.0.0	14	23	+	11.5955	7.95e-05	0.973	GTGAAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	68	77	-	11.5955	7.95e-05	0.973	GTGAAGGTCA
RORA	FLIPPED__Lincrna.flip.antisense__chr8:93889830..93889944,+__2439.1.0.0	92	101	-	11.5955	7.95e-05	0.973	GTGAAGGTCA
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	74	85	+	8.29091	7.95e-05	0.25	GATGACGCCACG
Creb5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	74	85	+	8.29091	7.95e-05	0.25	GATGACGCCACG
E2F6	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	7	17	-	10.6897	7.95e-05	0.0781	GCGCGGGAATT
Foxj3	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	26	42	+	10.9481	7.95e-05	1	GCCTGGTAAACAGAAAC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.1.0	26	39	-	9.92308	7.95e-05	0.0282	GCCACACCCTCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.0.0	26	39	-	9.92308	7.95e-05	0.0282	GCCACACCCTCACC
EGR1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	51	64	+	9.92308	7.95e-05	0.0282	ATCCCGCCCCTTCG
EGR1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	51	64	-	9.92308	7.95e-05	0.0282	ATCCCGCCCCTTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	101	114	-	9.92308	7.95e-05	0.0282	CCGCCGCCGCCATT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	101	114	-	9.92308	7.95e-05	0.0282	CCGCCGCCGCCATT
Nr1h3::Rxra	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	8	26	+	10.3387	7.95e-05	0.674	TGACTCGCAGTAGACGCGG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	89	107	-	10.3387	7.95e-05	0.674	TGACTCGCAGTAGACGCGG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	89	107	-	10.3387	7.95e-05	0.674	TGACTCGCAGTAGACGCGG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	89	107	-	10.3387	7.95e-05	0.674	TGACTCGCAGTAGACGCGG
Nr1h3::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	89	107	-	10.3387	7.95e-05	0.674	TGACTCGCAGTAGACGCGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	13	25	+	9.95082	7.95e-05	0.0589	CCCCTCGAGGGCC
E2F8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	1	12	+	3.79268	7.95e-05	0.631	TTTCTCCCAGAA
E2F8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	1	12	+	3.79268	7.95e-05	0.631	TTTCTCCCAGAA
E2F8	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	103	114	-	3.79268	7.95e-05	0.631	TTTCTCCCAGAA
EGR3	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	10	24	-	5.86207	7.95e-05	0.0418	CTCCGCCGGCGCGCT
EGR3	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	24	38	-	5.86207	7.95e-05	0.0418	CTCCGCCTCCCCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	43	57	+	5.86207	7.95e-05	0.0418	CGCCGGCCCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	34	48	-	5.86207	7.95e-05	0.0418	GCCCGCCCGCCCGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	53	67	-	5.86207	7.95e-05	0.0418	CGCCGGCCCCGCCCC
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	38	53	+	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	38	53	+	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	38	53	+	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	38	53	+	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.0	25	40	-	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	25	40	-	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Rarg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.1	25	40	-	-2.93878	7.95e-05	0.877	TGGTCCAAAAGTTTGA
Sox11	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	99	113	+	-14.8	7.95e-05	1	GACGATCCCAGTGTC
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	13	27	+	7.68571	7.95e-05	0.119	CCCCCCCCGTGTTGG
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	13	27	+	7.68571	7.95e-05	0.119	CCCCCCCCGTGTTGG
ZIC3	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	47	61	+	7.68571	7.95e-05	0.119	CCCGCCCCATGGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	68	+	7.68571	7.95e-05	0.119	GGCCCCCCTGGGGGC
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	61	-	7.68571	7.95e-05	0.119	GGCCCCCCTGGGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	61	-	7.68571	7.95e-05	0.119	GGCCCCCCTGGGGGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	61	-	7.68571	7.95e-05	0.119	GGCCCCCCTGGGGGC
ZIC3	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	54	68	-	7.68571	7.95e-05	0.119	CCCGCCCCATGGCGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	88	102	-	7.68571	7.95e-05	0.119	CCCCCCCCGTGTTGG
DMRT3	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	95	105	+	11.3607	7.95e-05	1	TGTGTATCAAC
DMRT3	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	10	20	-	11.3607	7.95e-05	1	TGTGTATCAAC
Gabpa	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	17	27	+	10.5574	7.95e-05	0.0731	GCGGAACTGGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	21	31	+	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	21	31	+	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	21	31	+	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	21	31	+	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	11	21	-	10.5574	7.95e-05	0.0731	GCGGAACTGGG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	48	58	+	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	57	67	-	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	57	67	-	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	57	67	-	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	84	94	-	10.5574	7.95e-05	0.0731	CAGGAAGTCCG
Gabpa	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	94	104	+	10.5574	7.95e-05	0.0731	GCGGAACTGGG
Gabpa	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	88	98	-	10.5574	7.95e-05	0.0731	GCGGAACTGGG
ELK1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	35	44	-	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	55	64	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	55	64	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	55	64	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	51	60	-	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	71	80	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	77	86	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	77	86	+	9.87234	7.95e-05	0.103	GGCGGAAGTC
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	30	39	-	10.7571	7.95e-05	0.12	GCAGGAAGTA
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	30	39	-	10.7571	7.95e-05	0.12	GCAGGAAGTA
ERF	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	71	80	+	10.7571	7.95e-05	0.12	GCAGGAAGTA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	15	28	-	8.36207	7.95e-05	0.0385	AACTCCGCCCACGA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	15	28	-	8.36207	7.95e-05	0.0385	AACTCCGCCCACGA
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	15	28	-	8.36207	7.95e-05	0.0385	AACTCCGCCCACGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	15	28	-	8.36207	7.95e-05	0.0385	AACTCCGCCCACGA
KLF14	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	87	100	+	8.36207	7.95e-05	0.0385	AACTCCGCCCACGA
NR2C2	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	9	23	+	8.98571	7.96e-05	0.122	CTGGGGGAAAGGGTG
NR2C2	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	50	64	+	8.98571	7.96e-05	0.122	CTGGGGGAAAGGGTG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	51	65	-	8.98571	7.96e-05	0.122	CTGGGGGAAAGGGTG
NR2C2	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	92	106	-	8.98571	7.96e-05	0.122	CTGGGGGAAAGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	16	29	-	5.11224	7.96e-05	0.0744	GGGCGGGTCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	16	29	-	5.11224	7.96e-05	0.0744	GGGCGGGTCGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	27	40	-	5.11224	7.96e-05	0.0744	GGGCGGGTCGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	27	40	-	5.11224	7.96e-05	0.0744	GGGCGGGTCGGGGG
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	76	86	+	11.2879	7.96e-05	1	TGGTAAACACT
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	76	86	+	11.2879	7.96e-05	1	TGGTAAACACT
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	18	35	-	8.7561	7.96e-05	0.215	CCTGCTCTGATTGGACTT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.1	18	35	-	8.7561	7.96e-05	0.215	CCTGCTCTGATTGGACTT
NFYA	WILDTYPE__Antisense.noflip.NA__chr5:59783925..59784039,+__701.1.0.0	20	37	-	8.7561	7.96e-05	0.215	AGCTAAGTGATTGGCTGG
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	22	36	+	9.82759	7.96e-05	0.504	ACGCTCCAGGCCACG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	22	36	+	9.82759	7.96e-05	0.504	ACGCTCCAGGCCACG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	22	36	+	9.82759	7.96e-05	0.504	ACGCTCCAGGCCACG
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	22	36	+	9.82759	7.96e-05	0.504	ACGCTCCAGGCCACG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	22	36	+	9.82759	7.96e-05	0.504	ACGCTCCAGGCCACG
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	95	109	+	9.82759	7.96e-05	0.504	AGCTTCAAGGCCCTG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	95	109	+	9.82759	7.96e-05	0.504	AGCTTCAAGGCCCTG
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	21	35	-	10.1489	7.96e-05	0.358	GCGTGTGACGTCACC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	80	94	+	10.1489	7.96e-05	0.358	GCGTGTGACGTCACC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	4	18	+	10.0364	7.96e-05	0.109	TGCCCCCGGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	4	18	+	10.0364	7.96e-05	0.109	TGCCCCCGGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	4	18	+	10.0364	7.96e-05	0.109	TGCCCCCGGCCGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	4	18	+	10.0364	7.96e-05	0.109	TGCCCCCGGCCGCGC
Hnf4a	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	14	29	-	2.47273	7.96e-05	0.536	AGGGACAAAGTATTTA
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	14	29	-	2.47273	7.96e-05	0.536	AGGGACAAAGTATTTA
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	52	61	-	10.9836	7.96e-05	0.726	CATGCGGGAG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	52	61	-	10.9836	7.96e-05	0.726	CATGCGGGAG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	32	46	+	7.83607	7.96e-05	0.0714	ACCCACACCCCAATT
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	32	46	+	7.83607	7.96e-05	0.0714	ACCCACACCCCAATT
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	36	49	-	2.5	7.96e-05	0.51	AAAGTCAAAGTTTG
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	36	49	-	2.5	7.96e-05	0.51	AAAGTCAAAGTTTG
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	60	73	+	2.5	7.96e-05	0.51	AAAGTCAAAGTTTG
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	60	73	+	2.5	7.96e-05	0.51	AAAGTCAAAGTTTG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	20	40	-	9.30612	7.96e-05	0.0215	GGGGGCGGGGCCTAGGGGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	34	54	-	9.30612	7.96e-05	0.0215	AGGGCAGTGAGAAAGGAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	34	54	-	9.30612	7.96e-05	0.0215	AGGGCAGTGAGAAAGGAAAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	34	54	-	9.30612	7.96e-05	0.0215	AGGGCAGTGAGAAAGGAAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	34	54	-	9.30612	7.96e-05	0.0215	AGGGCAGTGAGAAAGGAAAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	46	66	-	9.30612	7.96e-05	0.0215	GAGGATAGGGCAGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	46	66	-	9.30612	7.96e-05	0.0215	GAGGATAGGGCAGGGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	46	66	-	9.30612	7.96e-05	0.0215	GAGGATAGGGCAGGGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	46	66	-	9.30612	7.96e-05	0.0215	GAGGATAGGGCAGGGAGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	53	73	-	9.30612	7.96e-05	0.0215	GGGGGAAGCTGGCAAGATGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	53	73	-	9.30612	7.96e-05	0.0215	GGGGGAAGCTGGCAAGATGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	53	73	-	9.30612	7.96e-05	0.0215	GGGGGAAGCTGGCAAGATGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	53	73	-	9.30612	7.96e-05	0.0215	GGGGGAAGCTGGCAAGATGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	57	77	-	9.30612	7.96e-05	0.0215	GGGGGCGGGGCCTAGGGGAAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:77287609..77287723,+__1028.1.0.0	75	95	-	9.30612	7.96e-05	0.0215	GAATCAGCAGCAAAATGAGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	76	96	-	9.30612	7.96e-05	0.0215	CGGGGAGCTGGGGGCGGGGCG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	78	98	-	9.30612	7.96e-05	0.0215	GGTGGCAGGCAAGAGAGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	14	34	+	9.30612	7.96e-05	0.0215	CGGGGCGGAGGCGCGGGAGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	14	34	+	9.30612	7.96e-05	0.0215	CGGGGCGGAGGCGCGGGAGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	14	34	+	9.30612	7.96e-05	0.0215	CGGGGCGGAGGCGCGGGAGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	19	39	+	9.30612	7.96e-05	0.0215	CGGGGAGCTGGGGGCGGGGCG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	38	58	+	9.30612	7.96e-05	0.0215	GGAGCTGAGCCGAGAGAAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	38	58	+	9.30612	7.96e-05	0.0215	GGGGGCGGGGCCTAGGGGAAG
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	42	62	+	9.30612	7.96e-05	0.0215	GGGGGAAGCTGGCAAGATGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	75	95	+	9.30612	7.96e-05	0.0215	GGGGGCGGGGCCTAGGGGAAG
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	34	44	+	10.7967	7.96e-05	0.0258	ACCCCGCCCTT
SP3	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	43	53	+	10.7967	7.96e-05	0.0258	GCACCGCCCCT
SP3	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	51	61	+	10.7967	7.96e-05	0.0258	TCCCCACCCAT
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	57	67	+	10.7967	7.96e-05	0.0258	ACCCCGCCCTT
SP3	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	31	41	-	10.7967	7.96e-05	0.0258	GCACCGCCCCT
SP3	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	48	58	-	10.7967	7.96e-05	0.0258	ACCCCGCCCTT
SP3	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	62	72	-	10.7967	7.96e-05	0.0258	GCACCGCCCCT
SP3	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	71	81	-	10.7967	7.96e-05	0.0258	ACCCCGCCCTT
RXRB	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	48	-	0.0545455	7.96e-05	0.554	GGTGACAAAGGTCA
RXRB	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	67	80	+	0.0545455	7.96e-05	0.554	GGTGACAAAGGTCA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	30	41	-	10.2241	7.96e-05	0.365	ACAACCCCCATC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	30	41	-	10.2241	7.96e-05	0.365	ACAACCCCCATC
Creb3l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	70	78	+	11.2921	7.96e-05	0.301	TCGACGTGT
Dmbx1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	37	53	-	11.0658	7.96e-05	1	CAATTGGGATTATGAAA
Dmbx1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	62	78	+	11.0658	7.96e-05	1	CAATTGGGATTATGAAA
EOMES	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	56	68	+	10.8659	7.96e-05	1	CAGGTGTGAGTTG
GCM1	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	42	52	-	10.5102	7.97e-05	0.545	CATGGGGGTGG
GCM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	63	73	+	10.5102	7.97e-05	0.545	CATGGGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	63	73	+	10.5102	7.97e-05	0.545	CATGGGGGTGG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	+	9.54098	7.97e-05	0.0644	CGCCTCCTGGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	43	55	+	9.54098	7.97e-05	0.0644	ACCCCGCCAGGCC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	60	72	-	9.54098	7.97e-05	0.0644	ACCCCGCCAGGCC
HES7	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	10	21	+	2.72414	7.97e-05	0.202	AGGCCCGTGACG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	47	56	+	10.9808	7.97e-05	0.116	GGTGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.0.0	58	67	+	10.9808	7.97e-05	0.116	GGTGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776877..3776991,+__1584.1.1.0	58	67	+	10.9808	7.97e-05	0.116	GGTGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	33	42	-	10.9808	7.97e-05	0.116	GGTGGAAGTG
USF1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	20	30	+	10.7143	7.97e-05	0.229	CCCATGTGGTC
BHLHE40	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	10.5385	7.97e-05	0.305	CCCACGTGCT
BHLHE40	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	10.5385	7.97e-05	0.305	CCCACGTGCT
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	10.5385	7.97e-05	0.305	CCCACGTGCT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	11.1034	7.97e-05	0.117	ACCGGAAGAA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	11.1034	7.97e-05	0.117	ACCGGAAGAA
TCF7L2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	16	29	-	10.8	7.97e-05	1	AGGGTTCAAAGCTC
TCF7L2	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	86	99	+	10.8	7.97e-05	1	AGGGTTCAAAGCTC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	4	14	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	16	26	+	10.4697	7.97e-05	0.0536	GGGCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	16	26	+	10.4697	7.97e-05	0.0536	GGGCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	16	26	+	10.4697	7.97e-05	0.0536	GGGCCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	17	27	+	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	20	30	+	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	20	30	+	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	10	20	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	10	20	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	10	20	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	11	21	-	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	24	34	+	10.4697	7.97e-05	0.0536	CACCCCTCCCA
Klf1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	18	28	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	22	32	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	24	34	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	29	39	-	10.4697	7.97e-05	0.0536	GCCTCCACCCA
Klf1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	30	40	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	36	46	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	36	46	-	10.4697	7.97e-05	0.0536	TGCCACTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	48	58	+	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	48	58	+	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	50	60	+	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	41	51	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	41	51	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	55	65	-	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	69	79	+	10.4697	7.97e-05	0.0536	TGCCACTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	61	71	-	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	61	71	-	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	64	74	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	64	74	-	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	70	80	-	10.4697	7.97e-05	0.0536	TGACCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	83	93	+	10.4697	7.97e-05	0.0536	ACCCCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	87	97	+	10.4697	7.97e-05	0.0536	GCCTCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	87	97	+	10.4697	7.97e-05	0.0536	GCCTCCACCCA
Klf1	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	81	91	-	10.4697	7.97e-05	0.0536	CACCCCTCCCA
Klf1	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	94	104	+	10.4697	7.97e-05	0.0536	ACCCACTCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	89	99	-	10.4697	7.97e-05	0.0536	GGGCCCACCCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	2	12	-	10.9818	7.97e-05	0.0717	CCCCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	2	12	-	10.9818	7.97e-05	0.0717	CCCCTTCCTGT
RUNX3	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	41	50	-	11.2885	7.97e-05	0.478	TAACCACACA
RUNX3	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	61	70	-	11.2885	7.97e-05	0.478	TAACCACACA
RUNX3	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	45	54	+	11.2885	7.97e-05	0.478	TAACCACACA
RUNX3	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	65	74	+	11.2885	7.97e-05	0.478	TAACCACACA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	18	29	+	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	18	29	+	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	18	29	+	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	18	29	+	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	45	56	+	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	97	108	+	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	97	108	+	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	97	108	+	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	97	108	+	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	97	108	+	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	7	18	-	8.68852	7.97e-05	0.115	TGCCCGGAAGGA
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	59	70	-	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	59	70	-	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	59	70	-	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
ELF4	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	86	97	-	8.68852	7.97e-05	0.115	AGCCAGGAAGTC
Ascl2	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	28	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	53	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	53	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	53	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	53	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	77	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	88	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	88	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	104	-	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	11	20	+	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	36	+	10.6714	7.97e-05	0.244	GCCAGCTGCG
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	63	72	+	10.6714	7.97e-05	0.244	GCCAGCTGCA
Ascl2	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	91	100	+	10.6714	7.97e-05	0.244	GCCAGCTGCA
Ascl2	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	99	108	+	10.6714	7.97e-05	0.244	GCCAGCTGCA
Twist2	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	24	33	-	11.5246	7.97e-05	1	AACACATGTT
Twist2	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	57	66	+	11.5246	7.97e-05	1	AACACATGTT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	2	18	-	3.2	7.97e-05	0.0325	TAAGTCCCGCCCCGCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	2	18	-	3.2	7.97e-05	0.0325	TAAGTCCCGCCCCGCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	2	18	-	3.2	7.97e-05	0.0325	TAAGTCCCGCCCCGCAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	2	18	-	3.2	7.97e-05	0.0325	TAAGTCCCGCCCCGCAC
SP4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	26	42	+	3.2	7.97e-05	0.0325	GAGGCCCGGCCCACCCC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	73	89	-	3.2	7.97e-05	0.0325	GAGGCCCGGCCCACCCC
TEAD1	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	47	56	+	11.0484	7.97e-05	1	AACATTCCAG
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	25	38	-	10.8269	7.97e-05	0.225	AGGGAATGAGACAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	76	89	-	10.8269	7.97e-05	0.225	AGGGAATGAGACAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	76	89	-	10.8269	7.97e-05	0.225	AGGGAATGAGACAG
RARA(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	54	70	-	2.65574	7.97e-05	0.563	GGGGTATAAATAGGTCA
RARA(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	45	61	+	2.65574	7.97e-05	0.563	GGGGTATAAATAGGTCA
NKX2-3	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	56	65	+	11.3462	7.97e-05	1	AGCACTTCAG
NKX2-3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	50	59	-	11.3462	7.97e-05	1	AGCACTTCAG
NKX2-3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	50	59	-	11.3462	7.97e-05	1	AGCACTTCAG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	27	+	9.43103	7.97e-05	0.0559	CGCCGCGGGGGGC
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	15	27	-	9.43103	7.97e-05	0.0559	TGCCGGGCGGGGG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	20	32	-	9.43103	7.97e-05	0.0559	CGCCCTCGCGGGC
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	39	51	+	9.43103	7.97e-05	0.0559	CGCCCCCGCGGGC
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	34	46	-	9.43103	7.97e-05	0.0559	CGCCCCCGCGGGC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	69	81	+	9.43103	7.97e-05	0.0559	CGCCCCCGCGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	83	95	+	9.43103	7.97e-05	0.0559	CGCCCTCGCGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	83	95	+	9.43103	7.97e-05	0.0559	CGCCCTCGCGGGC
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	88	100	+	9.43103	7.97e-05	0.0559	TGCCGGGCGGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	91	103	+	9.43103	7.97e-05	0.0559	AGCCTCCGCGGGA
Pax6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	32	45	-	10.3222	7.97e-05	1	TTCATGCGTAAGTG
Pax6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	32	45	-	10.3222	7.97e-05	1	TTCATGCGTAAGTG
Pax6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	32	45	-	10.3222	7.97e-05	1	TTCATGCGTAAGTG
Pax6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	32	45	-	10.3222	7.97e-05	1	TTCATGCGTAAGTG
Pax6	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	70	83	+	10.3222	7.97e-05	1	TTCATGCGTAAGTG
GLI2	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	17	28	+	10.0172	7.97e-05	0.33	GAGGCCACACAG
GLI2	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	28	39	+	10.0172	7.97e-05	0.33	GAGACCACCCCT
GLI2	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	87	98	-	10.0172	7.97e-05	0.33	GAGGCCACACAG
Stat4	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	6	19	-	10.9655	7.97e-05	0.357	ATGCCGGGAACGCG
Stat4	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	96	109	+	10.9655	7.97e-05	0.357	ATGCCGGGAACGCG
ELF1	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	57	68	+	8.54545	7.98e-05	0.127	GGCACGGAAGTC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	27	38	-	8.54545	7.98e-05	0.127	CTCCCGGAAACC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	27	38	-	8.54545	7.98e-05	0.127	CTCCCGGAAACC
TBX20	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	34	44	-	10.4091	7.98e-05	1	ACGGTGTGAGG
TBX20	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	34	44	-	10.4091	7.98e-05	1	ACGGTGTGAGG
TBX20	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	34	44	-	10.4091	7.98e-05	1	ACGGTGTGAGG
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	34	44	-	10.4091	7.98e-05	1	ACGGTGTGAGG
TBX20	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	71	81	+	10.4091	7.98e-05	1	ACGGTGTGAGG
Klf4	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	3	12	+	10.4184	7.98e-05	0.0275	GGGGTGTTGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	77	86	-	10.4184	7.98e-05	0.0275	TGGGCGTGTT
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	55	66	+	3.7561	7.98e-05	0.631	TTTCCGCCGGAA
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	55	66	+	3.7561	7.98e-05	0.631	TTTCCGCCGGAA
E2F8	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	49	60	-	3.7561	7.98e-05	0.631	TTTCCGCCGGAA
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	20	33	-	7.7377	7.98e-05	0.186	CGCCCCCCAAGATG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	66	79	+	7.7377	7.98e-05	0.186	CGCCCCCCAAGATG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	91	104	+	7.7377	7.98e-05	0.186	GCCCCACCACAGCG
Bhlha15	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	1	8	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	10	17	-	11.918	7.98e-05	1	CCATCTGT
Bhlha15	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	28	35	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	29	36	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	23	30	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	26	33	-	11.918	7.98e-05	1	CCATCTGT
Bhlha15	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	30	37	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	39	46	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	39	46	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	40	47	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	49	56	+	11.918	7.98e-05	1	CCATCTGT
Bhlha15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	49	56	+	11.918	7.98e-05	1	CCATCTGT
Bhlha15	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	44	51	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	45	52	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	45	52	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	62	69	+	11.918	7.98e-05	1	CCATCTGT
Bhlha15	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	63	70	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	64	71	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	78	85	+	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	84	91	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.0.0	85	92	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189376652..189376766,+__625.1.1.0	85	92	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	90	97	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	98	105	+	11.918	7.98e-05	1	CCATCTGT
Bhlha15	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	99	106	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	107	114	-	11.918	7.98e-05	1	CCAGATGT
Bhlha15	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	107	114	-	11.918	7.98e-05	1	CCAGATGT
Sox2	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	15	22	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	26	33	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	38	45	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	38	45	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	38	45	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Enhancer.noflip.NA__chr11:65265021..65265135,-__2281.1.0.0	50	57	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	57	64	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	57	64	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	75	82	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	97	104	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	98	105	+	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	98	105	+	12.8852	7.98e-05	1	CCTTTGTG
TEAD3	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	74	81	+	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE__Lincrna.flip.sense__chr1:176176721..176176835,+__37.1.0.0	78	85	+	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr14:104583312..104583426,+__2002.1.0.0	84	91	+	12.1837	7.98e-05	0.847	ACATTCCG
Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	9	16	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	9	16	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	23	30	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	33	40	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	45	52	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	45	52	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	51	58	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	71	78	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	93	100	-	12.8852	7.98e-05	1	CCTTTGTG
Sox2	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	101	108	-	12.8852	7.98e-05	1	CCTTTGTG
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr14:104583315..104583429,-__2295.1.0.0	27	34	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	FLIPPED__Lincrna.flip.antisense__chr1:176176721..176176835,-__2616.1.0.0	30	37	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	34	41	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	63	70	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	68	75	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	74	81	-	12.1837	7.98e-05	0.847	ACATTCCG
TEAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	74	81	-	12.1837	7.98e-05	0.847	ACATTCCG
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	78	89	+	10.6721	7.98e-05	0.447	CCAGGCGCCCAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	78	89	+	10.6721	7.98e-05	0.447	CCAGGCGCCCAA
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	9.18182	7.98e-05	0.254	GGCACGTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	9.18182	7.98e-05	0.254	GGCACGTGAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	45	54	-	10.4128	7.98e-05	0.0553	GCCCCCCCTG
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	45	54	-	10.4128	7.98e-05	0.0553	GCCCCCCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	15	28	+	10.3939	7.98e-05	0.0662	CCCGCCTGCGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	15	28	+	10.3939	7.98e-05	0.0662	CCCGCCTGCGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	2	15	-	10.3939	7.98e-05	0.0662	CCCGCCTGCGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	87	100	-	10.3939	7.98e-05	0.0662	CCCGCCTGCGCCTG
Zfx	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	100	113	+	10.3939	7.98e-05	0.0662	CCCGCCTGCGCCTG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	1	10	+	7.65385	7.98e-05	0.216	CTCACGGGAC
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	1	10	+	7.65385	7.98e-05	0.216	CTCACGGGAC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	1	10	+	7.65385	7.98e-05	0.216	CTCACGGGAC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	1	10	+	7.65385	7.98e-05	0.216	CTCACGGGAC
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	1	10	+	7.65385	7.98e-05	0.216	CTCACGGGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	+	7.65385	7.98e-05	0.216	CTCACGCGAC
BHLHE41	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	105	114	-	7.65385	7.98e-05	0.216	CTCACGGGAC
REL	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	12	21	+	10.9798	7.98e-05	0.34	GGGAACTTCC
REL	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	16	25	+	10.9798	7.98e-05	0.34	GGTGCTTTCC
REL	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	54	63	+	10.9798	7.98e-05	0.34	GGGAACTTCC
REL	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	52	61	-	10.9798	7.98e-05	0.34	GGGAACTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	69	78	+	10.9798	7.98e-05	0.34	GGTGCTTTCC
REL	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	64	73	-	10.9798	7.98e-05	0.34	GGGAACTTCC
REL	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	90	99	-	10.9798	7.98e-05	0.34	GGTGCTTTCC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	89	102	-	5.10204	7.98e-05	0.0744	GGGTCTCCCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	89	102	-	5.10204	7.98e-05	0.0744	GGGTCTCCCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	89	102	-	5.10204	7.98e-05	0.0744	GGGTCTCCCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	89	102	-	5.10204	7.98e-05	0.0744	GGGTCTCCCGGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	89	102	-	5.10204	7.98e-05	0.0744	GGGTCTCCCGGGGA
Tcf21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	45	58	+	5.77632	7.98e-05	0.56	CTGCCAGCTGGCTC
Tcf21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	45	58	+	5.77632	7.98e-05	0.56	CTGCCAGCTGGCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	2	13	-	10.5658	7.98e-05	0.0362	CCCCAGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	2	13	-	10.5658	7.98e-05	0.0362	CCCCAGCCCCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	11	22	-	10.5658	7.98e-05	0.0362	GACCCACCCCTT
SP8	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	95	106	-	10.5658	7.98e-05	0.0362	ACCACTGCCACC
HINFP	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	9	20	+	10.3636	7.98e-05	0.109	CGCGGTCCGCCA
HINFP	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	95	106	-	10.3636	7.98e-05	0.109	CGCGGTCCGCCA
SPDEF	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	41	51	+	9.87273	7.98e-05	0.269	AACCGGAAACT
SPDEF	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	34	44	-	9.87273	7.98e-05	0.269	CCCCGGATATC
SPDEF	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	52	62	-	9.87273	7.98e-05	0.269	ATCCGGATATT
SPDEF	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	74	-	9.87273	7.98e-05	0.269	AACCGGAAACT
E2F4	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	7	17	+	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	1	11	-	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	1	11	-	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	1	11	-	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	28	38	+	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	28	38	+	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	28	38	+	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	77	87	-	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	104	114	+	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
E2F4	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	98	108	-	10.4655	7.98e-05	0.0509	AAGCGGGAGCG
Myog	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	22	+	11.4082	7.98e-05	0.18	GACAGGTGTGG
RFX5	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	94	109	-	6.24138	7.98e-05	0.366	CGGGGCCATGGCGACA
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	25	35	+	10.5192	7.98e-05	0.019	GTTCCGCCTTC
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	25	35	+	10.5192	7.98e-05	0.019	GTTCCGCCTTC
SP1	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	20	30	-	10.5192	7.98e-05	0.019	CCTCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	68	78	+	10.5192	7.98e-05	0.019	CCTCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	68	78	+	10.5192	7.98e-05	0.019	CCTCCGCCCTG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	94	104	+	10.5192	7.98e-05	0.019	CCTCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	94	104	+	10.5192	7.98e-05	0.019	CCTCCGCCCTG
STAT1::STAT2	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	6	20	+	9.19697	7.99e-05	0.35	GGAGTTTCCCTTCGC
Pparg::Rxra	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	25	39	+	10.5856	7.99e-05	0.188	CTTGGGCAGGGGCCC
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	76	90	-	10.5856	7.99e-05	0.188	CTTGGGCAGGGGCCC
E2F6	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	44	54	+	10.6552	7.99e-05	0.0784	GCGTGGGAAGC
Sox11	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	24	38	+	-14.8857	7.99e-05	1	CACACTCCCAGTGTC
Sox11	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	24	38	+	-14.8857	7.99e-05	1	CACACTCCCAGTGTC
Sox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	24	38	+	-14.8857	7.99e-05	1	CACACTCCCAGTGTC
Sox11	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	77	91	-	-14.8857	7.99e-05	1	CACACTCCCAGTGTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	17	31	+	10.0345	7.99e-05	0.0168	GGCCCTCCTCAGCAG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	17	31	+	10.0345	7.99e-05	0.0168	GGCCCTCCTCAGCAG
SP2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	20	34	-	10.0345	7.99e-05	0.0168	GATCCGCCTCCATCG
SP2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	27	41	-	10.0345	7.99e-05	0.0168	GGCCCTCCTCAGCAG
SP2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	74	88	+	10.0345	7.99e-05	0.0168	GGCCCTCCTCAGCAG
SP2	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	77	91	+	10.0345	7.99e-05	0.0168	GGCCCGCTCCAGCCG
SP2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	81	95	+	10.0345	7.99e-05	0.0168	GATCCGCCTCCATCG
SP2	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	84	98	-	10.0345	7.99e-05	0.0168	GGCCCTCCTCAGCAG
Foxo1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	87	97	+	11.2759	7.99e-05	0.902	TTCTGTTTCCA
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	87	97	+	11.2759	7.99e-05	0.902	TTCTGTTTCCA
Foxo1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	87	97	+	11.2759	7.99e-05	0.902	TTCTGTTTCCA
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	87	97	+	11.2759	7.99e-05	0.902	TTCTGTTTCCA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	25	42	-	-15.4605	7.99e-05	0.0545	GGGGGGGGGGGGGGTGGG
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	51	65	+	7.67143	7.99e-05	0.119	CCCGCCCCGCGACGC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	64	78	+	7.67143	7.99e-05	0.119	CCCCTCCCACTGCCC
ZIC3	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	90	104	+	7.67143	7.99e-05	0.119	GGCCTCCCGAGGGGG
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	11.541	7.99e-05	0.333	CCCACGTGCT
Npas2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	11.541	7.99e-05	0.333	CCCACGTGCT
Npas2	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	11.541	7.99e-05	0.333	CCCACGTGCT
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	43	59	+	-6.56364	7.99e-05	1	GAGGCCATATAAAGTCA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	43	59	+	-6.56364	7.99e-05	1	GAGGCCATATAAAGTCA
ZIC1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	21	34	+	5.82979	7.99e-05	0.103	AACTCCCTACTGAG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	26	39	+	5.82979	7.99e-05	0.103	AACTCCCTACTGAG
ZIC1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	58	71	-	5.82979	7.99e-05	0.103	TGCGCCCTGCGGTC
ZIC1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	76	89	-	5.82979	7.99e-05	0.103	AACTCCCTACTGAG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	81	94	-	5.82979	7.99e-05	0.103	AACTCCCTACTGAG
MIXL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	79	88	+	10.0417	7.99e-05	1	CCCAATTAAA
MIXL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	79	88	+	10.0417	7.99e-05	1	CCCAATTAAA
MIXL1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	27	36	-	10.0417	7.99e-05	1	CCCAATTAAA
Hand1::Tcf3	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	31	40	+	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.0.0	37	46	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	37	46	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	75	84	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	75	84	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	103	112	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	103	112	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	103	112	-	11.2135	7.99e-05	0.93	AGTCTGGCAG
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	19	33	-	5.84483	7.99e-05	0.0418	TCCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	20	34	-	5.84483	7.99e-05	0.0418	TCCCGCCGCCGCCGC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	50	64	+	5.84483	7.99e-05	0.0418	CCGCACCCACGCGGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	81	95	+	5.84483	7.99e-05	0.0418	TCCCGCCGCCGCCGC
POU2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	5	16	+	10.89	7.99e-05	1	CGTATTCAAATG
POU2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	5	16	+	10.89	7.99e-05	1	CGTATTCAAATG
POU2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	5	16	+	10.89	7.99e-05	1	CGTATTCAAATG
POU2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	5	16	+	10.89	7.99e-05	1	CGTATTCAAATG
POU2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	5	16	+	10.89	7.99e-05	1	CGTATTCAAATG
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	100	-	11.6327	7.99e-05	0.422	ACCACCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	100	-	11.6327	7.99e-05	0.422	ACCACCTGCC
TCF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	100	-	11.6327	7.99e-05	0.422	ACCACCTGCC
EGR4	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	32	47	+	9.94545	7.99e-05	0.0411	CTCCGCCCCGGCCCCA
EGR4	FLIPPED__Enhancer.flip.antisense__chr18:45688066..45688180,-__2832.1.0.0	19	34	-	9.94545	7.99e-05	0.0411	CCCCGCCCTCTCCCTC
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	35	50	+	9.94545	7.99e-05	0.0411	CGCAGCCCACCCACCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	26	41	-	9.94545	7.99e-05	0.0411	CCCCCCCCTCGCCAAG
EGR4	WILDTYPE__Enhancer.flip.sense__chr18:45688066..45688180,+__1775.1.0.0	81	96	+	9.94545	7.99e-05	0.0411	CCCCGCCCTCTCCCTC
EGR4	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	68	83	-	9.94545	7.99e-05	0.0411	CTCCGCCCCGGCCCCA
ALX3	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	10.1782	7.99e-05	1	TCTAATTAGT
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	-	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	+	11.3818	7.99e-05	0.729	ATTGCGCCAC
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	20	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	20	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	20	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	20	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	20	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	70	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	70	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	70	+	11.2041	7.99e-05	0.79	ATTGCGCCACA
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	47	58	+	8.54839	7.99e-05	1	AGTATAAATAGC
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	47	58	+	8.54839	7.99e-05	1	AGTATAAATAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	47	58	+	8.54839	7.99e-05	1	AGTATAAATAGC
MEF2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	47	58	+	8.54839	7.99e-05	1	AGTATAAATAGC
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.0	47	58	+	8.54839	7.99e-05	1	AGTATAAATAGC
XBP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	32	45	+	9.40385	8e-05	0.529	GTGGCCACGTGACC
XBP1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	48	61	-	9.40385	8e-05	0.529	GTGGCCACGTGACC
Hnf4a	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	85	100	-	2.45455	8e-05	0.536	TGGGGCGAAGCCCGGG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	2	12	-	10.8846	8e-05	0.0758	GGCCCCAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	14	24	-	10.8846	8e-05	0.0758	GGCCCCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	14	24	-	10.8846	8e-05	0.0758	GGCCCCAGGCC
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	36	46	-	10.8846	8e-05	0.0758	TCCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	55	65	+	10.8846	8e-05	0.0758	GGCCCCAGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	55	65	+	10.8846	8e-05	0.0758	GGCCCCAGGCC
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	80	90	+	10.8846	8e-05	0.0758	ACCCTCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	82	92	+	10.8846	8e-05	0.0758	CGCCTCAAGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	93	103	+	10.8846	8e-05	0.0758	TCCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	93	103	+	10.8846	8e-05	0.0758	TCCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	93	103	+	10.8846	8e-05	0.0758	TCCCTCGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	93	103	+	10.8846	8e-05	0.0758	TCCCTCGGGCA
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	21	31	+	11.069	8e-05	0.285	TCCTGTGGGCT
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	21	31	+	11.069	8e-05	0.285	TCCTGTGGGCT
RUNX1	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	22	32	-	11.069	8e-05	0.285	TCCTGTGGGCT
RUNX1	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	24	34	-	11.069	8e-05	0.285	TCCTGTGGGCT
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	36	46	+	11.069	8e-05	0.285	GGTTGTGGCTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	36	46	+	11.069	8e-05	0.285	GGTTGTGGCTG
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr10:9012053..9012167,+__144.1.0.0	62	72	+	11.069	8e-05	0.285	GGTTGTGGCTG
RUNX1	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	81	91	+	11.069	8e-05	0.285	TCCTGTGGGCT
RUNX1	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	83	93	+	11.069	8e-05	0.285	TCCTGTGGGCT
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	59	71	+	7.81034	8e-05	0.178	TTACAGGAAGTGG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	59	71	+	7.81034	8e-05	0.178	TTACAGGAAGTGG
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	24	36	+	9.93443	8e-05	0.0589	CGCCGCCGCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	26	38	+	9.93443	8e-05	0.0589	TCCCGCGGAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	26	38	+	9.93443	8e-05	0.0589	TCCCGCGGAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	26	38	+	9.93443	8e-05	0.0589	TCCCGCGGAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	91	103	+	9.93443	8e-05	0.0589	TGCCGGCATGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	91	103	+	9.93443	8e-05	0.0589	TGCCGGCATGGCA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	12	24	-	9.93443	8e-05	0.0589	TGCCGGCATGGCA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	79	91	-	9.93443	8e-05	0.0589	CGCCGCCGCGGCA
NFIL3	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	37	47	-	10.7475	8e-05	1	TTTTGTAACTT
NFIL3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	101	111	-	10.7475	8e-05	1	ATATGTAACTT
NFIL3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	101	111	-	10.7475	8e-05	1	ATATGTAACTT
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	48	57	+	10.9878	8e-05	0.472	CTCACATCAC
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	48	57	+	10.9878	8e-05	0.472	CTCACATCAC
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	48	57	+	10.9878	8e-05	0.472	CTCACATCAC
SREBF1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	72	81	+	10.9878	8e-05	0.472	CTCACATCAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	88	106	-	10.2258	8e-05	0.15	GTACCCACCGAGCCAAAGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	88	106	-	10.2258	8e-05	0.15	GTACCCACCGAGCCAAAGC
KLF14	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	3	16	-	8.34483	8e-05	0.0386	GGCTCCGCCCCGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	6	15	+	10.6379	8e-05	0.21	GGTACGTGTC
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	6	15	+	10.6379	8e-05	0.21	GGTACGTGTC
Vdr	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	49	64	+	3.44262	8e-05	0.833	GAGGCCAGGAAGTACA
Vdr	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	51	66	-	3.44262	8e-05	0.833	GAGGCCAGGAAGTACA
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.0.0	55	66	-	9.38776	8e-05	0.194	TTCCTGGGGTTT
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:23720421..23720535,-__796.1.1.0	55	66	-	9.38776	8e-05	0.194	TTCCTGGGGTTT
NR2C2	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	19	33	-	8.97143	8e-05	0.122	GGAGGGGGAGGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	69	83	-	8.97143	8e-05	0.122	AAGCGGCGGAGGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	69	83	-	8.97143	8e-05	0.122	AAGCGGCGGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	69	83	-	8.97143	8e-05	0.122	AAGCGGCGGAGGGCG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	5	19	-	6.81579	8e-05	0.277	AGCGTGAGTCACCCA
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	5	19	-	6.81579	8e-05	0.277	AGCGTGAGTCACCCA
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	24	38	+	6.81579	8e-05	0.277	AGCGTGAGTCACCCA
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	48	62	+	7.81967	8e-05	0.0714	CGCCCCGCCCCTCGG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.0.0	35	49	-	7.81967	8e-05	0.0714	GGCCCCGCGCTGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.1.0	35	49	-	7.81967	8e-05	0.0714	GGCCCCGCGCTGCCC
Spz1	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	75	85	+	10.9727	8e-05	0.77	AGGGGAAAAGC
JUNB	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	20	30	+	10.6939	8.01e-05	0.236	TAGTGACTAAG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	40	51	-	11	8.01e-05	0.0579	CACCCTAAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	40	51	-	11	8.01e-05	0.0579	CACCCTAAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	69	80	+	11	8.01e-05	0.0579	CGCCCTCCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	69	80	+	11	8.01e-05	0.0579	CGCCCTCCGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	69	80	+	11	8.01e-05	0.0579	CGCCCTCCGCCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	-	11	8.01e-05	0.0579	TGGCCGGGGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	91	102	-	11	8.01e-05	0.0579	CACCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	33	+	10.6909	8.01e-05	0.0718	AGCCTCCGGGG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr2:122407077..122407191,-__1173.1.0.0	92	102	+	10.6909	8.01e-05	0.0718	CGCCCTCGGCG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr2:122407077..122407191,+__2494.1.0.0	13	23	-	10.6909	8.01e-05	0.0718	CGCCCTCGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	37	47	-	10.6909	8.01e-05	0.0718	AGCCTCCGGGG
Atoh1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	25	34	+	11.2097	8.01e-05	1	GACAGATGGT
NEUROG2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	57	-	9.57576	8.01e-05	1	AACAGATGGT
NEUROG2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	57	-	9.57576	8.01e-05	1	AACAGATGGT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	25	36	+	10.9636	8.01e-05	0.0924	CGGCTGAGGGCA
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	43	54	+	10.9636	8.01e-05	0.0924	CCCCGCCGGGCA
TFAP2B	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	61	72	-	10.9636	8.01e-05	0.0924	CCCCGCCGGGCA
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	41	55	-	5.25843	8.01e-05	0.368	AGCACTTTGGGGTCA
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	41	55	-	5.25843	8.01e-05	0.368	AGCACTTTGGGGTCA
Gata4	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	48	58	+	11.2931	8.01e-05	1	CCTTATCTGGA
NFIA	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	66	75	+	12.1778	8.01e-05	1	TCTGCCAAGT
REST	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	27	47	-	4.65306	8.01e-05	0.235	TCAGGGGCCAGGGAAAGCTGC
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	-	-0.403846	8.01e-05	0.932	TGCCATCTGCCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	-	-0.403846	8.01e-05	0.932	TGCCATCTGCCA
TGIF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	-	-0.403846	8.01e-05	0.932	TGCCATCTGCCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	-	-0.403846	8.01e-05	0.932	TGCCATCTGCCA
GLIS1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	18	33	-	-10.3077	8.01e-05	0.329	GTACCGCCCCCGACCC
CEBPB	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	50	59	+	11.32	8.01e-05	0.822	GTTATGCAAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	56	65	-	11.32	8.01e-05	0.822	GTTATGCAAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	56	65	-	11.32	8.01e-05	0.822	GTTATGCAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	56	65	-	11.32	8.01e-05	0.822	GTTATGCAAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	56	65	-	11.32	8.01e-05	0.822	GTTATGCAAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	22	38	-	3.18182	8.01e-05	0.0326	CCCGCCCCGGCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	22	38	-	3.18182	8.01e-05	0.0326	CCCGCCCCGGCCCCGCC
E2F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	4	21	-	2.29091	8.01e-05	1	GGAAAGCCCGCCCCTTCC
E2F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	4	21	-	2.29091	8.01e-05	1	GGAAAGCCCGCCCCTTCC
E2F3	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	35	52	+	2.29091	8.01e-05	1	GGAAAGCCCGCCCCTTCC
E2F3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	63	80	-	2.29091	8.01e-05	1	GGAAAGCCCGCCCCTTCC
E2F3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	63	80	-	2.29091	8.01e-05	1	GGAAAGCCCGCCCCTTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	69	82	+	9.90385	8.01e-05	0.0284	CTACTTCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	69	82	+	9.90385	8.01e-05	0.0284	CTACTTCCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.1.0	83	96	+	9.90385	8.01e-05	0.0284	CGCCTGCCGACGCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	67	84	+	-15.4737	8.01e-05	0.0545	GGAAGGAAACTTGGAAAC
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	31	48	-	-15.4737	8.01e-05	0.0545	GGAAGGAAACTTGGAAAC
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.1	44	57	+	5.76316	8.01e-05	0.56	CGTCCAGCTGGTGA
Tcf21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.1.0	44	57	+	5.76316	8.01e-05	0.56	CGTCCAGCTGGTGA
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	60	71	+	8.52727	8.01e-05	0.127	GTTCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	60	71	+	8.52727	8.01e-05	0.127	GTTCCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	60	71	+	8.52727	8.01e-05	0.127	GTTCCGGAAGCC
BCL6B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	6	22	-	-17.4857	8.01e-05	1	TCATTTCCAGGCATCAA
BCL6B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	6	22	-	-17.4857	8.01e-05	1	TCATTTCCAGGCATCAA
BCL6B	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	93	109	+	-17.4857	8.01e-05	1	TCATTTCCAGGCATCAA
SOX8	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	21	36	-	-13.6515	8.02e-05	1	AAAACTCAACATTGTT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	34	53	-	3.15596	8.02e-05	0.0712	CCACCCTCCAGCCGCCGAGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	3	12	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	3	12	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	3	12	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	3	12	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	3	12	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	3	12	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	3	12	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	3	12	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	3	12	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	3	12	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	12	21	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	15	24	+	9.89516	8.02e-05	0.0516	CGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	17	26	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	17	26	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	17	26	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	17	26	+	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	12	21	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	15	24	-	9.89516	8.02e-05	0.0516	GGCTCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	17	26	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	17	26	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	17	26	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	17	26	-	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	34	43	+	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	34	43	+	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	34	43	+	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	34	43	-	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	34	43	-	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	34	43	-	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	66	75	+	9.89516	8.02e-05	0.0516	CGCTCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	66	75	-	9.89516	8.02e-05	0.0516	GGCGCGAGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	100	109	+	9.89516	8.02e-05	0.0516	GGCTCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	100	109	+	9.89516	8.02e-05	0.0516	GGCTCGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	100	109	+	9.89516	8.02e-05	0.0516	GGCTCGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	100	109	+	9.89516	8.02e-05	0.0516	GGCTCGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	100	109	-	9.89516	8.02e-05	0.0516	CGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	100	109	-	9.89516	8.02e-05	0.0516	CGCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	100	109	-	9.89516	8.02e-05	0.0516	CGCGCGAGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	100	109	-	9.89516	8.02e-05	0.0516	CGCGCGAGCC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.0.0	46	66	+	8.53226	8.02e-05	0.187	TCCCTTTTTTTTTTTCATTTC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	53	73	-	8.53226	8.02e-05	0.187	GCTCGCTCCCAGTTCCTTTTT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	25	34	+	9.82927	8.02e-05	0.569	TCCAGCTGTC
MSC	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	77	86	+	9.82927	8.02e-05	0.569	TCCAGCTGTC
MSC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	29	38	-	9.82927	8.02e-05	0.569	TCCAGCTGTC
MSC	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	81	90	-	9.82927	8.02e-05	0.569	TCCAGCTGTC
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	9	23	-	9.81034	8.02e-05	0.504	CGCTCCAAGGTCGCG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	9	23	-	9.81034	8.02e-05	0.504	CGCTCCAAGGTCGCG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	21	35	-	9.81034	8.02e-05	0.504	CGCTCCAAGGTCGCG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	41	55	-	9.81034	8.02e-05	0.504	CGCTCCAAGGTCGCG
ETV2	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	37	47	+	10	8.02e-05	0.183	TACAGGAAACT
ETV2	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	41	51	+	10	8.02e-05	0.183	GAACGGAAGCA
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	74	-	10	8.02e-05	0.183	GAACGGAAGCA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	74	-	10	8.02e-05	0.183	GAACGGAAGCA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	36	47	+	9.37755	8.02e-05	0.194	AGGCAGCGGGCG
HNF4G	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	99	113	-	10.4423	8.02e-05	0.343	TGAGTCCAGGGTTCC
E2F8	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	34	45	-	3.71951	8.02e-05	0.631	CTTCCCCCCCAC
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	50	61	+	3.71951	8.02e-05	0.631	CTTCCCCCCCAC
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	50	61	+	3.71951	8.02e-05	0.631	CTTCCCCCCCAC
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	50	61	+	3.71951	8.02e-05	0.631	CTTCCCCCCCAC
E2F8	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	70	81	+	3.71951	8.02e-05	0.631	CTTCCCCCCCAC
Sox11	WILDTYPE__Lincrna.noflip.NA__chr6:58287638..58287752,-__753.1.0.0	74	88	-	-14.9429	8.02e-05	1	AACAACTGCAGGGGA
BATF3	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	31	44	+	0.19697	8.02e-05	0.243	GGATGATGTCATGG
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	7	20	+	8.22581	8.02e-05	0.77	AATAAAGAGAAAGT
IRF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	7	20	+	8.22581	8.02e-05	0.77	AATAAAGAGAAAGT
HOXB3	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	39	48	+	9.96	8.02e-05	1	GCCAATTAGG
Creb5	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	83	94	+	8.25455	8.02e-05	0.251	AATGATGTAATG
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	88	102	+	-3.36364	8.02e-05	0.725	AGTGAAACCTCAACT
POU4F3	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	29	44	-	10.4724	8.03e-05	1	ATGCATAATGAAAACG
POU4F3	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	71	86	+	10.4724	8.03e-05	1	ATGCATAATGAAAACG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	38	48	-	10.9455	8.03e-05	0.0718	GCGCTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	38	48	-	10.9455	8.03e-05	0.0718	GCGCTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	38	48	-	10.9455	8.03e-05	0.0718	GCGCTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	41	51	-	10.9455	8.03e-05	0.0718	GCGCTTCCTCC
ELK4	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	64	74	+	10.9455	8.03e-05	0.0718	GCGCTTCCTCC
HNF1B	WILDTYPE__mrna.noflip.NA__chr10:14574678..14574792,-__974.1.0.0	41	53	-	9.71212	8.03e-05	1	GTTAATCATAGAC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	8	20	-	9.5082	8.03e-05	0.0644	CCCCCTGGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	8	20	-	9.5082	8.03e-05	0.0644	CCCCCTGGCGGCC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	22	34	+	9.5082	8.03e-05	0.0644	TCCCCAGCAGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	36	48	+	9.5082	8.03e-05	0.0644	CCCCCCGGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	81	93	-	9.5082	8.03e-05	0.0644	TCCCCAGCAGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	100	112	+	9.5082	8.03e-05	0.0644	TGCCGCGCGGGGG
ELF4	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	5	16	+	8.67213	8.03e-05	0.115	TAGCAGGAAGTC
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.0.0	80	91	-	8.67213	8.03e-05	0.115	TAGCAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:37670602..37670716,+__1794.1.1.0	80	91	-	8.67213	8.03e-05	0.115	TAGCAGGAAGTC
ETS1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	36	45	+	11.0862	8.03e-05	0.117	GCCGGAAACC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	69	82	+	10.3788	8.03e-05	0.0662	CCTGCAGGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	74	87	-	10.3788	8.03e-05	0.0662	CCACGCCTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	74	87	-	10.3788	8.03e-05	0.0662	CCACGCCTGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	74	87	-	10.3788	8.03e-05	0.0662	CCACGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	74	87	-	10.3788	8.03e-05	0.0662	CCACGCCTGGCCTG
GATA2	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	7	20	-	11.2727	8.03e-05	1	GCCTTTTTATCTCA
Gata1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	27	37	+	11.1633	8.03e-05	1	TCTTTATCTGA
Gata1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	78	88	-	11.1633	8.03e-05	1	TCTTTATCTGA
Gata1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	78	88	-	11.1633	8.03e-05	1	TCTTTATCTGA
Gata1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	78	88	-	11.1633	8.03e-05	1	TCTTTATCTGA
TFCP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	51	60	+	10.9545	8.03e-05	1	GAACTGGTTA
TFCP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	51	60	+	10.9545	8.03e-05	1	GAACTGGTTA
GLIS2	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	14	27	+	7.72131	8.03e-05	0.186	AAGCCCCCGCGGCC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	15	28	+	7.72131	8.03e-05	0.186	GCCCCCCCTCGCGC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	28	41	-	7.72131	8.03e-05	0.186	GCCCCCCCTCGCGC
PAX1	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	14	30	-	4.98182	8.03e-05	0.619	CGTGACGCACGAGCTGC
Gfi1b	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	74	84	+	10.8966	8.03e-05	0.597	CAATCACAGTG
Gfi1b	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	31	41	-	10.8966	8.03e-05	0.597	CAATCACAGTG
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	31	41	-	10.8966	8.03e-05	0.597	CAATCACAGTG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	30	44	+	7.65714	8.03e-05	0.119	TACTTCCTGCCGGGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	30	44	+	7.65714	8.03e-05	0.119	TACTTCCTGCCGGGA
ZIC4	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	95	109	-	10.0182	8.03e-05	0.11	TCCCTCCCGCCGCTG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	6	20	+	10.0182	8.03e-05	0.11	TCCCTCCCGCCGCTG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	6	20	+	10.0182	8.03e-05	0.11	TCCCTCCCGCCGCTG
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	19	28	+	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	19	28	+	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	11	20	-	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	11	20	-	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	44	53	-	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	44	53	-	9.68966	8.03e-05	0.249	GTCATGTGAT
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	95	104	+	9.68966	8.03e-05	0.249	GTCATGTGAT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	82	96	+	9.92424	8.03e-05	0.122	TTCTCGCGTCCGCAG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	82	96	+	9.92424	8.03e-05	0.122	TTCTCGCGTCCGCAG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	82	96	+	9.92424	8.03e-05	0.122	TTCTCGCGTCCGCAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	82	96	+	9.92424	8.03e-05	0.122	TTCTCGCGTCCGCAG
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	100	114	+	9.92424	8.03e-05	0.122	GGCTCGCGCGCGTGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	100	114	+	9.92424	8.03e-05	0.122	GGCTCGCGCGCGTGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	100	114	+	9.92424	8.03e-05	0.122	GGCTCGCGCGCGTGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	100	114	+	9.92424	8.03e-05	0.122	GGCTCGCGCGCGTGC
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	73	92	+	6.6	8.03e-05	1	GAGCGGCAGCGGGACCCCAG
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	73	92	+	6.6	8.03e-05	1	GAGCGGCAGCGGGACCCCAG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	61	78	+	4.03448	8.03e-05	0.335	CTGCCCCGCCCCCCTGGG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	61	78	+	4.03448	8.03e-05	0.335	CTGCCCCGCCCCCCTGGG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	64	78	+	5.82759	8.03e-05	0.0418	TTCCGCCCACCTGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	64	78	+	5.82759	8.03e-05	0.0418	TTCCGCCCACCTGCC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	36	53	+	-15.4868	8.04e-05	0.0545	GAAGAGGAGGCAGGGGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	62	79	-	-15.4868	8.04e-05	0.0545	GAAGAGGAGGCAGGGGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	62	79	-	-15.4868	8.04e-05	0.0545	GAAGAGGAGGCAGGGGGC
RFX5	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	45	60	+	6.22414	8.04e-05	0.366	TGGCGCCCTAGCAACC
RFX5	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	55	70	-	6.22414	8.04e-05	0.366	TGGCGCCCTAGCAACC
Six3	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	6	22	-	10.0263	8.04e-05	1	ATTGGTGGATCACCATT
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	17	30	-	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	29	42	-	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	47	60	-	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	49	62	-	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	53	66	-	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	49	62	+	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	53	66	+	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	55	68	+	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	73	86	+	5.08163	8.04e-05	0.0744	GCGGGGGAGGGGGG
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	80	90	+	10.1273	8.04e-05	0.246	AGTGAATCAGA
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	16	33	-	-10.3788	8.04e-05	1	AACTCCAAAGGTTCAGTG
RARA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	16	33	-	-10.3788	8.04e-05	1	AACTCCAAAGGTTCAGTG
RARA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	61	78	-	-10.3788	8.04e-05	1	AACTCCAAAGGTTCAGTG
RARA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	61	78	-	-10.3788	8.04e-05	1	AACTCCAAAGGTTCAGTG
Hoxa11	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	68	79	-	11.1774	8.04e-05	1	AGTCATTAAATA
STAT1::STAT2	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	41	55	+	9.18182	8.04e-05	0.35	TGGGTTGCACTTCCT
STAT1::STAT2	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	60	74	-	9.18182	8.04e-05	0.35	TGGGTTGCACTTCCT
Nfe2l2	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	97	111	+	9.37879	8.04e-05	0.358	CTCCATGAGGCAGCG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	3	23	-	9.28571	8.04e-05	0.0216	AAGGGCGGAGGCGGTGGTGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	3	23	-	9.28571	8.04e-05	0.0216	AAGGGCGGAGGCGGTGGTGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	7	27	-	9.28571	8.04e-05	0.0216	GAAGGATGCAGGGGGAATATA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	29	49	-	9.28571	8.04e-05	0.0216	TGTGGAGGGGGAGGGCGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	35	55	-	9.28571	8.04e-05	0.0216	GAAGGGGAGGAGGGCAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	35	55	-	9.28571	8.04e-05	0.0216	GAAGGGGAGGAGGGCAGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	44	64	-	9.28571	8.04e-05	0.0216	GGGGGGTGGGGTGGGGGGAGT
ZNF263	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	54	74	-	9.28571	8.04e-05	0.0216	AGGGGAGGGTCGAGTTAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	54	74	-	9.28571	8.04e-05	0.0216	GGGGAGGGGAAGGGAGAGGAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	54	74	-	9.28571	8.04e-05	0.0216	GGGGAGGGGAAGGGAGAGGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	80	100	-	9.28571	8.04e-05	0.0216	TGGGGAGCGGGGGCGGAGGTT
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	14	34	+	9.28571	8.04e-05	0.0216	TGGGGAGCGGGGGCGGAGGTT
ZNF263	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	16	36	+	9.28571	8.04e-05	0.0216	AGGTGAGGTGGAGAGAAAAAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	21	41	+	9.28571	8.04e-05	0.0216	AGGGGAAGTGGGTGAAAGGGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	39	59	+	9.28571	8.04e-05	0.0216	CGGGGAGAGGCCGGGTGGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	41	61	+	9.28571	8.04e-05	0.0216	AGGGGAGGGTCGAGTTAGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	41	61	+	9.28571	8.04e-05	0.0216	AGGGGAGGGTCGAGTTAGGAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	66	86	+	9.28571	8.04e-05	0.0216	TGTGGAGGGGGAGGGCGAGGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	65	79	-	6.80263	8.04e-05	0.277	ATCATGTGTCAGCCT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	65	79	-	6.80263	8.04e-05	0.277	ATCATGTGTCAGCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	3	12	-	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	3	12	-	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	16	25	+	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	9	18	-	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	36	45	+	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	30	39	-	10.898	8.04e-05	0.0261	CTCCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	39	48	-	10.898	8.04e-05	0.0261	CTCCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	39	48	-	10.898	8.04e-05	0.0261	CTCCCACCCA
KLF5	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	70	79	-	10.898	8.04e-05	0.0261	ATCCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	90	99	-	10.898	8.04e-05	0.0261	ATCCCACCCC
RUNX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	1	10	+	11.1923	8.04e-05	0.479	AAACCGCACG
TBX20	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	7	17	-	10.3939	8.05e-05	1	TGTGTGTGAAG
TBX20	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	98	108	+	10.3939	8.05e-05	1	TGTGTGTGAAG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	35	45	+	10.7886	8.05e-05	0.0259	CCCACCCCCCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	35	45	+	10.7886	8.05e-05	0.0259	CCCACCCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	34	44	-	10.7886	8.05e-05	0.0259	CCCACCCCCCA
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	44	54	-	10.7886	8.05e-05	0.0259	CCCACCCCCCA
SP3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	46	56	-	10.7886	8.05e-05	0.0259	CCCACCCCCCA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	54	66	-	7.7931	8.05e-05	0.178	AGGGCGGAAGTGA
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	54	66	-	7.7931	8.05e-05	0.178	AGGGCGGAAGTGA
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	54	66	-	7.7931	8.05e-05	0.178	AGGGCGGAAGTGA
ELF3	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	78	90	-	7.7931	8.05e-05	0.178	AGGGCGGAAGTGA
PKNOX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	88	99	-	1.87755	8.05e-05	1	ACACAGGTGTCT
PKNOX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	88	99	-	1.87755	8.05e-05	1	ACACAGGTGTCT
T	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	28	43	+	7.42308	8.05e-05	1	TCCCAGGAGGGTGTGA
ZIC1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	2	15	-	5.80851	8.05e-05	0.103	CCCCACCCGGCGCG
ZIC1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	35	48	+	5.80851	8.05e-05	0.103	CACGCCCCGGCGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	67	80	-	5.80851	8.05e-05	0.103	CACGCCCCGGCGTG
KLF16	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	12	22	-	10.1724	8.05e-05	0.025	CTCCCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	35	45	+	10.1724	8.05e-05	0.025	GCGCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	42	52	+	10.1724	8.05e-05	0.025	GGCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	42	52	+	10.1724	8.05e-05	0.025	GGCCCACCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	42	52	+	10.1724	8.05e-05	0.025	GGCCCACCCAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	42	52	+	10.1724	8.05e-05	0.025	GGCCCACCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	45	55	-	10.1724	8.05e-05	0.025	GCGCCGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	60	70	+	10.1724	8.05e-05	0.025	GCGCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	63	73	-	10.1724	8.05e-05	0.025	GGCCCACCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	103	+	10.1724	8.05e-05	0.025	CTCCCGCCCCT
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	29	39	-	11.0364	8.05e-05	0.0554	ACCCGGAGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	76	86	+	11.0364	8.05e-05	0.0554	ACCCGGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	75	85	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	75	85	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	75	85	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	75	85	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	75	85	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	96	106	+	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	96	106	+	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	96	106	+	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	99	109	+	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	99	109	+	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	98	108	-	11.0364	8.05e-05	0.0554	CGGCTCAGGCG
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	17	30	-	10.8077	8.05e-05	0.226	GACCTGTGAGTCAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	31	44	+	10.8077	8.05e-05	0.226	GACCTGTGAGTCAC
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	55	68	-	5.75	8.05e-05	0.56	AGAACATGTGTTGC
STAT1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	68	78	-	10.0727	8.05e-05	0.398	CTTCTGAGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	74	84	-	10.0727	8.05e-05	0.398	CTGCTGGGAAG
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	74	84	-	10.0727	8.05e-05	0.398	CTGCTGGGAAG
Klf12	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	2	16	-	7.80328	8.05e-05	0.0714	CGCCCCGCCCCCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	12	26	-	7.80328	8.05e-05	0.0714	CGCCCCGCCCCCCGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	28	42	+	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	28	42	+	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	31	45	+	7.80328	8.05e-05	0.0714	CGCCCCGCCCCCCGC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	28	42	-	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	28	42	-	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
Klf12	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	55	69	+	7.80328	8.05e-05	0.0714	GGGCCCGCCCCTCCA
Klf12	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	73	87	+	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
Klf12	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	73	87	-	7.80328	8.05e-05	0.0714	GGACACGCCTTCCGC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	21	35	+	10.0172	8.05e-05	0.017	CCCCTGCCCCCATTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	22	36	-	10.0172	8.05e-05	0.017	CACCCGCCTCCCTTT
SP2	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	55	69	+	10.0172	8.05e-05	0.017	CCACCGCCCTGCCCC
SP2	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	70	84	+	10.0172	8.05e-05	0.017	TCTCCTCCTCCTCTT
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	28	38	-	11.1273	8.05e-05	0.151	AAGCGGAAGAG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	31	41	-	11.1273	8.05e-05	0.151	AGGCGGAAGAA
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	31	41	-	11.1273	8.05e-05	0.151	AGGCGGAAGAA
ELF5	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	67	77	-	11.1273	8.05e-05	0.151	ACCGGGAAGCG
RARA(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	79	95	-	2.62295	8.05e-05	0.563	AGGGCAGCCGGCGCTCA
Klf4	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	8	17	+	10.398	8.05e-05	0.0277	AGGGTGGGTT
DUXA	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	2	14	-	10.9194	8.05e-05	1	CTGATCCAATCTC
DUXA	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	101	113	+	10.9194	8.05e-05	1	CTGATCCAATCTC
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	11	22	+	10.5526	8.05e-05	0.0364	CCCCCCCCCAGT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	18	29	+	10.5526	8.05e-05	0.0364	CCCACCGCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	18	29	+	10.5526	8.05e-05	0.0364	CCCACCGCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	18	29	+	10.5526	8.05e-05	0.0364	CCCACCGCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	18	29	+	10.5526	8.05e-05	0.0364	CCCACCGCCCCT
SP8	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	52	63	+	10.5526	8.05e-05	0.0364	GCCTCTCCCACT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	52	63	-	10.5526	8.05e-05	0.0364	GCCTCTCCCACT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	52	63	-	10.5526	8.05e-05	0.0364	GCCTCTCCCACT
E2F4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	15	25	+	10.4483	8.05e-05	0.0511	AGGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	7	17	-	10.4483	8.05e-05	0.0511	AGGCGGGGGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	7	17	-	10.4483	8.05e-05	0.0511	AGGCGGGGGGG
E2F4	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	98	108	+	10.4483	8.05e-05	0.0511	AGGCGGGGGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	90	100	-	10.4483	8.05e-05	0.0511	AGGCGGGGGGG
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	70	81	+	11.0333	8.05e-05	1	TGCTGCAATCCT
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	70	81	+	11.0333	8.05e-05	1	TGCTGCAATCCT
Ddit3::Cebpa	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	34	45	-	11.0333	8.05e-05	1	TGCTGCAATCCT
GSC2	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	34	43	-	10.5763	8.05e-05	1	ATTAATCCCA
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	14	23	-	10.3486	8.05e-05	0.0553	ACACCCCCAA
KLF14	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	2	15	+	8.32759	8.06e-05	0.0386	GCGCCCGCCCCTCT
KLF14	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	48	61	+	8.32759	8.06e-05	0.0386	GACCGCACCCACTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	49	62	+	8.32759	8.06e-05	0.0386	GAACTCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	49	62	+	8.32759	8.06e-05	0.0386	GAACTCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	59	72	+	8.32759	8.06e-05	0.0386	CACCCCACCCCCAT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	54	67	-	8.32759	8.06e-05	0.0386	GACCGCACCCACTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	54	67	-	8.32759	8.06e-05	0.0386	GACCGCACCCACTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	100	113	-	8.32759	8.06e-05	0.0386	GCGCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	100	113	-	8.32759	8.06e-05	0.0386	GCGCCCGCCCCTCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	100	113	-	8.32759	8.06e-05	0.0386	GCGCCCGCCCCTCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	100	113	-	8.32759	8.06e-05	0.0386	GCGCCCGCCCCTCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	20	32	+	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	20	32	+	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	15	27	-	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	15	27	-	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	88	100	+	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	83	95	-	7.69697	8.06e-05	0.264	TGGGATCTCCCCT
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	64	76	+	9.91803	8.06e-05	0.0589	GCCCCTGGCGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	39	51	-	9.91803	8.06e-05	0.0589	GCCCCTGGCGGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	20	33	+	0.181818	8.06e-05	0.243	CGCTGACGTCGGCA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	20	33	+	0.181818	8.06e-05	0.243	CGCTGACGTCGGCA
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	33	45	-	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	54	66	-	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.1.0	54	66	-	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	49	61	+	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	68	80	+	10.4426	8.06e-05	0.359	CCGTCTGCCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	68	80	+	10.4426	8.06e-05	0.359	CCGTCTGCCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.1.0	70	82	+	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	70	82	+	10.4426	8.06e-05	0.359	CTGACTGTCCCCT
HES5	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	82	93	+	1.94828	8.06e-05	0.298	AGGCCCGTGCCC
POU6F1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	+	11.1361	8.06e-05	1	AATAATTAGC
POU6F1	WILDTYPE__Enhancer.noflip.NA__chr17:72638000..72638114,+__1772.1.0.0	54	63	-	11.1361	8.06e-05	1	GCTAATTATT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	60	77	-	-15.5	8.06e-05	0.0545	GGAGGGCGAGGAGGAGGA
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	28	38	+	10.5	8.06e-05	0.0191	CCACCTCCCCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	28	38	+	10.5	8.06e-05	0.0191	CCACCTCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	30	40	+	10.5	8.06e-05	0.0191	CCACCTCCCCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	36	46	+	10.5	8.06e-05	0.0191	TCCCCTCCCAA
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	59	69	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	71	81	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	75	85	-	10.5	8.06e-05	0.0191	CCACCTCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	103	113	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	103	113	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	103	113	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	103	113	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	103	113	-	10.5	8.06e-05	0.0191	CTCCCACCTCT
ETV5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	11.0545	8.06e-05	0.13	ACCGGAAACC
ETV5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	11.0545	8.06e-05	0.13	ACCGGAAACC
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	19	32	-	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	19	32	-	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	19	32	-	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	19	32	-	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	100	113	+	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	100	113	+	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	100	113	+	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
XBP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	100	113	+	9.38462	8.06e-05	0.529	GCGGAGACGTCATT
Klf1	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	28	38	-	10.4091	8.06e-05	0.054	CTCCACGCCCA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	21	31	+	10.1091	8.06e-05	0.246	AGTGAGTAAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	55	66	-	10.5286	8.06e-05	0.218	GGCGACCCCGGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	55	66	-	10.5286	8.06e-05	0.218	GGCGACCCCGGG
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	55	66	-	10.5286	8.06e-05	0.218	GGCGACCCCGGG
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	55	66	-	10.5286	8.06e-05	0.218	GGCGACCCCGGG
ZBTB7A	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	56	67	-	10.5286	8.06e-05	0.218	GGCGACCCCGGG
ZBTB7A	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	48	59	+	10.5286	8.06e-05	0.218	GGCGACCCCGGG
HEY2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	11	20	-	10.6207	8.06e-05	0.21	GTCGCGTGTC
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	37	46	+	10.6207	8.06e-05	0.21	GTCGCGTGTC
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	95	104	+	10.6207	8.06e-05	0.21	GTCGCGTGTC
HEY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	95	104	+	10.6207	8.06e-05	0.21	GTCGCGTGTC
CDX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	46	56	+	11.4068	8.06e-05	1	GTGCTATAAAA
CDX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	46	56	+	11.4068	8.06e-05	1	GTGCTATAAAA
CDX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	46	56	+	11.4068	8.06e-05	1	GTGCTATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	46	56	+	11.4068	8.06e-05	1	GTGCTATAAAA
CDX2	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	59	69	-	11.4068	8.06e-05	1	GTGCTATAAAA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	26	36	+	10.6727	8.07e-05	0.0718	GCCCTGAGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	64	74	+	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	64	74	+	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	64	74	+	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	85	95	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	85	95	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	85	95	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	85	95	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	91	101	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	91	101	-	10.6727	8.07e-05	0.0718	CGCTCCAGGCG
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	48	57	+	11.1897	8.07e-05	1	ACCATCTGTT
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	48	57	+	11.1897	8.07e-05	1	ACCATCTGTT
REST	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	6	26	-	4.63265	8.07e-05	0.235	GTCAGCCCGCATGACAGTTCC
REST	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	6	26	-	4.63265	8.07e-05	0.235	GTCAGCCCGCATGACAGTTCC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	37	47	-	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	37	47	-	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	37	47	-	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	37	47	-	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	55	65	-	10.6346	8.07e-05	0.823	TTGGTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	55	65	-	10.6346	8.07e-05	0.823	TTGGTGCTGAC
NRL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	55	65	-	10.6346	8.07e-05	0.823	TTGGTGCTGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	77	87	+	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	77	87	+	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	77	87	+	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NRL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	77	87	+	10.6346	8.07e-05	0.823	GTTGTGCTGAT
NFE2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	17	27	-	5.12245	8.07e-05	0.377	CGTGACTCCTC
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	52	65	+	2.45122	8.07e-05	0.51	GAGGTCGAGTGTCA
Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	52	65	+	2.45122	8.07e-05	0.51	GAGGTCGAGTGTCA
Rxra	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	50	63	-	2.45122	8.07e-05	0.51	GAGGTCGAGTGTCA
Rxra	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	66	79	+	2.45122	8.07e-05	0.51	GAGGGCGAAGGCCA
Gata4	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	6	16	-	11.2586	8.07e-05	1	TTTTATCTCAG
Gata4	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	51	61	+	11.2586	8.07e-05	1	TTTTATCTCAG
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	42	60	+	10.2097	8.07e-05	0.15	GAGGGCAGGGGAGGGGAGC
PAX5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	42	60	+	10.2097	8.07e-05	0.15	GAGGGCAGGGGAGGGGAGC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	18	36	-	10.2097	8.07e-05	0.15	GAGGGCAGGGGAGGGGAGC
EGR4	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	2	17	+	9.92727	8.07e-05	0.0411	CACCGCCCAGCCGACT
EGR4	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	9	24	-	9.92727	8.07e-05	0.0411	TCACTCCCCCACAACT
EGR4	WILDTYPE__Antisense.noflip.NA__chr9:131314654..131314768,-__892.1.0.0	9	24	-	9.92727	8.07e-05	0.0411	CTCCGCCGGCGCGCTC
EGR4	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	31	46	+	9.92727	8.07e-05	0.0411	CCCCTCCCACCCTCGG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	21	36	-	9.92727	8.07e-05	0.0411	GTCCGCCCACCTGTCG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	21	36	-	9.92727	8.07e-05	0.0411	GTCCGCCCACCTGTCG
EGR4	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	52	67	+	9.92727	8.07e-05	0.0411	CTCCGCGCCCCCACGC
EGR4	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	48	63	-	9.92727	8.07e-05	0.0411	CTCCGCGCCCCCACGC
EGR4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	62	77	-	9.92727	8.07e-05	0.0411	AGCCGCCGACGCCAAA
EGR4	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	91	106	+	9.92727	8.07e-05	0.0411	TCACTCCCCCACAACT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	98	113	-	9.92727	8.07e-05	0.0411	CACCGCCCAGCCGACT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	98	113	-	9.92727	8.07e-05	0.0411	CACCGCCCAGCCGACT
TGIF2	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	72	83	-	7.76147	8.07e-05	0.855	TGACATGTCCCA
TGIF2	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	32	43	+	7.76147	8.07e-05	0.855	TGACATGTCCCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	55	65	-	9.10345	8.07e-05	0.0862	TCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	55	65	-	9.10345	8.07e-05	0.0862	TCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	94	104	-	9.10345	8.07e-05	0.0862	GCGCCCATGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	94	104	-	9.10345	8.07e-05	0.0862	GCGCCCATGCG
Hoxa11	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	58	69	+	11.1613	8.07e-05	1	GCTCATAAACGT
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	22	34	+	9.39655	8.07e-05	0.0563	CCCCCCGACGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	40	52	-	9.39655	8.07e-05	0.0563	TCCCTCAGAGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	40	52	-	9.39655	8.07e-05	0.0563	TCCCTCAGAGGCT
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	81	93	-	9.39655	8.07e-05	0.0563	CCCCCCGACGGCC
EBF1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	3	16	-	8.67213	8.07e-05	0.365	ATTCCCGTGAGATG
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	58	71	+	8.67213	8.07e-05	0.365	TTTCCCCGGCGAAT
EBF1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	99	112	+	8.67213	8.07e-05	0.365	ATTCCCGTGAGATG
KLF13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	8	25	+	4.01724	8.07e-05	0.335	CGACCACGCCCCGCCCGC
Gfi1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	69	78	+	10.8659	8.07e-05	0.561	TAAATCCCTG
Gfi1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	69	78	+	10.8659	8.07e-05	0.561	TAAATCCCTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	7	18	+	8.65574	8.07e-05	0.115	AGACAGGAAGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	7	18	+	8.65574	8.07e-05	0.115	AGACAGGAAGTG
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	17	28	+	8.65574	8.07e-05	0.115	TTCCCGGAACTT
ELF4	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	65	76	-	8.65574	8.07e-05	0.115	TTCCCGGAACTT
CREB3	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	6	19	-	9.31429	8.08e-05	0.297	CGGCCACTTCATAG
CLOCK	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	46	55	-	10.9848	8.08e-05	0.585	AACACATGCT
CLOCK	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	60	69	+	10.9848	8.08e-05	0.585	AACACATGCT
CLOCK	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	10.9848	8.08e-05	0.585	GCCACGTGGC
CLOCK	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	10.9848	8.08e-05	0.585	GCCACGTGGC
GRHL1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	65	76	+	10.3448	8.08e-05	1	AAAACACGTTTT
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	11.1455	8.08e-05	0.118	CCCGGATGTG
ETV1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	11.1455	8.08e-05	0.118	GCCGGAAGGG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	14	27	+	10.3636	8.08e-05	0.0662	GCAGCCCCGCCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	14	27	+	10.3636	8.08e-05	0.0662	GCAGCCCCGCCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	6	19	-	10.3636	8.08e-05	0.0662	GTGTGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	6	19	-	10.3636	8.08e-05	0.0662	GTGTGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	6	19	-	10.3636	8.08e-05	0.0662	GTGTGCCTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	6	19	-	10.3636	8.08e-05	0.0662	GTGTGCCTGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	26	39	+	10.3636	8.08e-05	0.0662	GCAGCCCCGCCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	41	54	+	10.3636	8.08e-05	0.0662	CCGGCTGAGCCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	69	82	+	10.3636	8.08e-05	0.0662	CAGAGCAGGGCCTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	56	70	+	5.81034	8.08e-05	0.0418	CCCCCCCCCCGTGCC
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.1.0	14	28	-	9.7931	8.08e-05	0.504	TGTTTCAAGGTTACT
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:22566058..22566172,-__1578.1.0.0	14	28	-	9.7931	8.08e-05	0.504	TGTTTCAAGGTTACT
HEY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	+	11.1455	8.08e-05	0.173	GCCACGTGGA
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	+	11.1455	8.08e-05	0.173	GCCACGTGGA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	26	42	+	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	26	42	+	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
Rarg(var.2)	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	93	109	+	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	6	22	-	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
Rarg(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	6	22	-	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
Rarg(var.2)	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	73	89	-	-6.61818	8.08e-05	1	GGGGTCGCGCGGGGACC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	36	53	+	-15.5132	8.08e-05	0.0545	GGCTGGAGGTAAGGAGGC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	59	76	+	-15.5132	8.08e-05	0.0545	GGGGGGAGCGCAGGAACC
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	65	82	+	-15.5132	8.08e-05	0.0545	GGTGGGAAGCAAGGCCTA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	4	21	-	-15.5132	8.08e-05	0.0545	GGAAGCGACGCAGAAAGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	5	22	-	-15.5132	8.08e-05	0.0545	GGGAGGGGAGTAGGAGGA
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	33	50	-	-15.5132	8.08e-05	0.0545	GGTGGGAAGCAAGGCCTA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	39	56	-	-15.5132	8.08e-05	0.0545	GGGGGGAGCGCAGGAACC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	62	79	-	-15.5132	8.08e-05	0.0545	GGCTGGAGGTAAGGAGGC
HOXC12	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	51	61	-	10.3455	8.08e-05	1	CCTCGTAAAAG
TBX21	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	35	44	+	10.4909	8.08e-05	1	AGGGTGTGAG
TBX21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	90	99	+	10.4909	8.08e-05	1	AGGGTGTGAG
TBX21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	90	99	+	10.4909	8.08e-05	1	AGGGTGTGAG
FOXP1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	24	38	+	10.7042	8.08e-05	0.369	AAGAGGAAAAAAAAA
FOXP1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	77	91	-	10.7042	8.08e-05	0.369	AAGAGGAAAAAAAAA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	92	111	+	3.12844	8.08e-05	0.0717	CCCCACCACAGCGCCTGAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	91	104	-	9.88462	8.08e-05	0.0286	CCACCGCCTACTGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	91	104	-	9.88462	8.08e-05	0.0286	CCACCGCCTACTGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	46	59	-	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	46	59	-	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
PLAG1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	62	75	-	5.06122	8.08e-05	0.0744	GGGGCTGGGAGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	71	84	-	5.06122	8.08e-05	0.0744	GTGGGCCTCTGCGG
PLAG1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	77	90	-	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	21	34	+	5.06122	8.08e-05	0.0744	GGGGCTGGGAGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	21	34	+	5.06122	8.08e-05	0.0744	GGGGCTGGGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	25	38	+	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	25	38	+	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
PLAG1	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	31	44	+	5.06122	8.08e-05	0.0744	GTGGGCCTCTGCGG
PLAG1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	40	53	+	5.06122	8.08e-05	0.0744	GGGGCTGGGAGGGG
PLAG1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	56	69	+	5.06122	8.08e-05	0.0744	GAGGACGAGGGGGA
NFYB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	12	26	-	10.1731	8.08e-05	0.211	CGGCCGACCAATGGA
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	12	26	-	10.1731	8.08e-05	0.211	CGGCCGACCAATGGA
NFYB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	12	26	-	10.1731	8.08e-05	0.211	CGGCCGACCAATGGA
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	12	26	-	10.1731	8.08e-05	0.211	CGGCCGACCAATGGA
SP8	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	2	13	-	10.5395	8.09e-05	0.0364	GCCCCTCCCCGA
SP8	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	51	62	+	10.5395	8.09e-05	0.0364	GCACCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	61	72	+	10.5395	8.09e-05	0.0364	GCACCGCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	61	72	+	10.5395	8.09e-05	0.0364	GCACCGCCTCCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	53	64	-	10.5395	8.09e-05	0.0364	GCACCGCCTCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	53	64	-	10.5395	8.09e-05	0.0364	GCACCGCCTCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	57	68	-	10.5395	8.09e-05	0.0364	GCTCCTCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	113	+	10.5395	8.09e-05	0.0364	GCCCCTCCCCGA
ESR1	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	38	54	-	-1.01515	8.09e-05	0.514	GGGTTCGCAGCGACCCC
ID4	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	+	11.0164	8.09e-05	0.389	TACAGCTGTC
ID4	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	87	96	+	11.0164	8.09e-05	0.389	TACAGCTGCC
Tcf21	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	54	67	-	5.73684	8.09e-05	0.56	GAAACAGCTTTTCC
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	54	67	-	4.77551	8.09e-05	0.377	TGGCTCGGAGCCTT
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	25	36	-	-0.442308	8.09e-05	0.932	TGGCAGCCGACA
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	25	36	-	-0.442308	8.09e-05	0.932	TGGCAGCCGACA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	21	32	+	10.9818	8.09e-05	0.0579	CCCCTGCAGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	23	34	+	10.9818	8.09e-05	0.0579	CGCCCCGAGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	23	34	+	10.9818	8.09e-05	0.0579	CGCCCCGAGGGC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	26	37	+	10.9818	8.09e-05	0.0579	TCCCCGCAGGGG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	35	46	-	10.9818	8.09e-05	0.0579	CCCCTTCGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	35	46	-	10.9818	8.09e-05	0.0579	CCCCTTCGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	44	55	-	10.9818	8.09e-05	0.0579	CGCCCCGAGGGC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	44	55	-	10.9818	8.09e-05	0.0579	TCCCCTCAGCCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	69	80	+	10.9818	8.09e-05	0.0579	CCCCTTCGGCCA
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	42	51	+	11.3276	8.09e-05	0.659	CCTTTCTTCC
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	42	51	+	11.3276	8.09e-05	0.659	CCTTTCTTCC
Sox3	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	48	57	-	11.3276	8.09e-05	0.659	CCTTTCTTCC
Sox3	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	68	77	-	11.3276	8.09e-05	0.659	CCTTTCTTCC
SP4	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	3	19	+	3.14545	8.09e-05	0.0328	GCGGCCACCCCTCCAAC
SP4	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	6	22	+	3.14545	8.09e-05	0.0328	CCAGGCCCGCCCCCTCT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	2	18	-	3.14545	8.09e-05	0.0328	CCAGGCCCGCCCCCTCT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	2	18	-	3.14545	8.09e-05	0.0328	CCAGGCCCGCCCCCTCT
SP4	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	32	48	+	3.14545	8.09e-05	0.0328	GCACCCCCTCCCACTTC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	27	43	-	3.14545	8.09e-05	0.0328	TTGCCCCCTCCCCTCCC
SP4	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	97	113	+	3.14545	8.09e-05	0.0328	CCAGGCCCGCCCCCTCT
SP4	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	93	109	-	3.14545	8.09e-05	0.0328	CCAGGCCCGCCCCCTCT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	96	112	-	3.14545	8.09e-05	0.0328	GCGGCCACCCCTCCAAC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	96	112	-	3.14545	8.09e-05	0.0328	GCGGCCACCCCTCCAAC
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	98	114	-	3.14545	8.09e-05	0.0328	ATGGCCACAGCCACTCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	83	96	+	5.79268	8.09e-05	0.501	TGTGCAGACTTCTC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	31	40	-	9.16364	8.09e-05	0.255	ATCTCGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	31	40	-	9.16364	8.09e-05	0.255	ATCTCGTGAT
E2F1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	6	17	-	10.6393	8.09e-05	0.447	GTGGGCGCCATC
E2F1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	98	109	+	10.6393	8.09e-05	0.447	GTGGGCGCCATC
Stat5a::Stat5b	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	73	83	+	11.102	8.09e-05	0.4	GTTTCTCAGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	76	86	+	11.102	8.09e-05	0.4	GTTTCTCAGAG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	76	86	+	11.102	8.09e-05	0.4	GTTTCTCAGAG
Stat5a::Stat5b	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	99	109	-	11.102	8.09e-05	0.4	AGTTCCCGGAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	15	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	15	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	8	18	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	26	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	26	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	32	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	32	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	61	71	+	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	3	13	-	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
SP3	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	44	54	-	10.7805	8.09e-05	0.0259	GCCCCTCCCAG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	48	59	+	8.50909	8.09e-05	0.127	GGAGCGGAAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	48	59	+	8.50909	8.09e-05	0.127	GGAGCGGAAGTG
ELF1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	59	70	+	8.50909	8.09e-05	0.127	GGGCCGGAAATG
ELF1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	59	70	+	8.50909	8.09e-05	0.127	GGGCCGGAAATG
ELF1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	46	57	-	8.50909	8.09e-05	0.127	GGGCCGGAAATG
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	21	32	-	2.40984	8.09e-05	0.644	TCACAAGTGCCA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	21	32	-	2.40984	8.09e-05	0.644	TCACAAGTGCCA
PKNOX2	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	83	94	+	2.40984	8.09e-05	0.644	TCACAAGTGCCA
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	95	113	-	10.3065	8.09e-05	0.674	TGTCCTCCTGTCACTCTCG
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	95	113	-	10.3065	8.09e-05	0.674	TGTCCTCCTGTCACTCTCG
HOXC11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	27	37	-	11.1034	8.09e-05	1	GCTCGTAAAGA
HOXC11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	47	57	-	11.1034	8.09e-05	1	GCTCGTAAAGA
HOXC11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	75	85	-	11.1034	8.09e-05	1	GCTCGTAAAGA
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	5	15	-	11.2576	8.09e-05	1	GTGAAAACAAA
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	5	15	-	11.2576	8.09e-05	1	GTGAAAACAAA
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	25	35	+	11.2576	8.09e-05	1	GAGAAAACAGG
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	25	35	+	11.2576	8.09e-05	1	GAGAAAACAGG
FOXP2	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	38	48	+	11.2576	8.09e-05	1	GTGAAAACAAA
FOXP2	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	67	77	-	11.2576	8.09e-05	1	GTGAAAACAAA
FOXP2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	100	110	+	11.2576	8.09e-05	1	GTGAAAACAAA
Rarg	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	74	89	+	-3.02041	8.09e-05	0.877	ACGGCCAGAAGTCCAG
Rarg	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	74	89	+	-3.02041	8.09e-05	0.877	ACGGCCAGAAGTCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	84	97	-	4.76531	8.09e-05	0.377	TGGCTCCGGGTCAT
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	84	97	-	4.76531	8.09e-05	0.377	TGGCTCCGGGTCAT
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	84	97	-	4.76531	8.09e-05	0.377	TGGCTCCGGGTCAT
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	84	97	-	4.76531	8.09e-05	0.377	TGGCTCCGGGTCAT
HOXA10	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	79	-	10.6792	8.1e-05	1	AGTCATTAAAT
MYBL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	33	44	+	9.48276	8.1e-05	1	TCGGTTAACAGC
MYBL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	33	44	+	9.48276	8.1e-05	1	TCGGTTAACAGC
MYBL1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	33	44	+	9.48276	8.1e-05	1	TCGGTTAACAGC
HOXB13	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	80	89	+	11.0364	8.1e-05	1	CCTATAAACA
Nfe2l2	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	34	48	+	9.36364	8.1e-05	0.359	CCTTATGAATAAGCA
ELK3	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	11	8.1e-05	0.125	AGCGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	64	73	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	64	73	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	64	73	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	64	73	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	64	73	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	88	97	+	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	18	27	-	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	18	27	-	11	8.1e-05	0.125	GCCGGAAGAA
ELK3	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	11	8.1e-05	0.125	AGCGGAAGCA
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	18	27	+	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	18	27	+	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	11	20	-	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	11	20	-	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	11	20	-	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	11	20	-	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	45	54	-	10.602	8.1e-05	0.277	GGTCATGTGA
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	45	54	-	10.602	8.1e-05	0.277	GGTCATGTGA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	39	50	+	10.9455	8.1e-05	0.0924	CGCCCCGAGCCT
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	39	50	+	10.9455	8.1e-05	0.0924	CGCCCCGAGCCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	39	50	+	10.9455	8.1e-05	0.0924	CGCCCCGAGCCT
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	39	50	+	10.9455	8.1e-05	0.0924	CGCCCCGAGCCT
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	30	44	-	7.78689	8.1e-05	0.0714	AGACACACCCACCAG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	30	44	-	7.78689	8.1e-05	0.0714	AGACACACCCACCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	30	44	-	7.78689	8.1e-05	0.0714	AGACACACCCACCAG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	48	62	-	7.78689	8.1e-05	0.0714	AGACACACCCACCAG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	48	62	-	7.78689	8.1e-05	0.0714	AGACACACCCACCAG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	57	67	-	11.1091	8.1e-05	0.151	CCACGGAAGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	57	67	-	11.1091	8.1e-05	0.151	CCACGGAAGTG
PPARG	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	30	49	+	6.57778	8.1e-05	1	GAAGGGCCTGCTGACTACAT
PPARG	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	66	85	-	6.57778	8.1e-05	1	GAAGGGCCTGCTGACTACAT
Tcf12	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	12	22	+	11.3265	8.1e-05	0.196	GACAGGTGTGG
TCF3	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	61	70	-	12.0192	8.1e-05	0.404	GACACCTGTA
MAFG	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	56	76	-	9.43878	8.1e-05	1	GAAGGGATGAGTGAGCAAAGC
MAFG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	93	113	-	9.43878	8.1e-05	1	GAAGGGATGAGTGAGCAAAGC
MAFG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	93	113	-	9.43878	8.1e-05	1	GAAGGGATGAGTGAGCAAAGC
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	24	34	-	10.1455	8.1e-05	0.247	TAATGATTCAT
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	103	113	+	10.1455	8.1e-05	0.247	TAATGATTCAT
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	32	42	-	10.6379	8.1e-05	0.0787	CGGAGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	32	42	-	10.6379	8.1e-05	0.0787	CGGAGGGAGAG
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	32	42	-	10.6379	8.1e-05	0.0787	CGGAGGGAGAG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	32	42	-	10.6379	8.1e-05	0.0787	CGGAGGGAGAG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	39	52	-	10.931	8.1e-05	0.357	GTTCCCGGAAGGGG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	39	52	-	10.931	8.1e-05	0.357	GTTCCCGGAAGGGG
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	39	52	-	10.931	8.1e-05	0.357	GTTCCCGGAAGGGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	39	52	-	10.931	8.1e-05	0.357	GTTCCCGGAAGGGG
Stat4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	88	101	-	10.931	8.1e-05	0.357	CTGCCTGGAACGGG
Stat4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	88	101	-	10.931	8.1e-05	0.357	CTGCCTGGAACGGG
Nr2f6	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	4	17	-	8.28788	8.1e-05	0.443	GGGGTCAGAGGAGA
Nr2f6	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	98	111	+	8.28788	8.1e-05	0.443	GGGGTCAGAGGAGA
Stat6	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	59	73	+	10.5	8.1e-05	0.834	GGATTCCGCTGAAGT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	34	44	-	10.5246	8.1e-05	0.0743	CAGGAAGAGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	34	44	-	10.5246	8.1e-05	0.0743	CAGGAAGAGGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	81	92	-	10.3333	8.1e-05	0.109	AAAGGTCCGCAC
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	10.5	8.1e-05	0.305	GCCACGTGCT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	10.5	8.1e-05	0.305	TCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	10.5	8.1e-05	0.305	TCCACGTGAC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	10.5	8.1e-05	0.305	TCCACGTGAC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	10.5	8.1e-05	0.305	TCCACGTGAC
BHLHE40	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	10.5	8.1e-05	0.305	GCCACGTGCT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	10.5	8.1e-05	0.305	GCCACGTGCT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	10.5	8.1e-05	0.305	GCCACGTGCT
HNF4G	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	26	40	-	10.4231	8.1e-05	0.343	GGAATCCAAGGGCCT
HNF4G	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	38	52	-	10.4231	8.1e-05	0.343	GGGGGTCAAGGGGCG
HNF4G	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	63	77	+	10.4231	8.1e-05	0.343	GGGGGTCAAGGGGCG
HNF4G	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	75	89	+	10.4231	8.1e-05	0.343	GGAATCCAAGGGCCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	44	53	-	10.3273	8.1e-05	0.655	ATCAGCTGCC
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	44	53	-	10.3273	8.1e-05	0.655	ATCAGCTGCC
SPIC	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	29	-	10.5634	8.1e-05	0.289	CCAAACCGGAAGCT
E2F8	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	56	67	+	3.67073	8.1e-05	0.631	TCTCCCGCGTAT
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	9	22	-	11.2545	8.1e-05	1	TTTGTGTTATCTCT
GATA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	9	22	-	11.2545	8.1e-05	1	TTTGTGTTATCTCT
TFAP2A(var.3)	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	32	44	+	9.90164	8.1e-05	0.0589	GGCCGCGAGGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	36	48	-	9.90164	8.1e-05	0.0589	AGCCTACGGGGCG
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	71	83	-	9.90164	8.1e-05	0.0589	GGCCGCGAGGGGC
RREB1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	39	58	-	3.11927	8.1e-05	0.0717	CACCCACCCGCCCGCCCTTC
RREB1	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	64	83	-	3.11927	8.1e-05	0.0717	CCTCAACCCCCACCCTTCGA
RREB1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	57	76	+	3.11927	8.1e-05	0.0717	CACCCACCCGCCCGCCCTTC
POU2F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	10	22	-	10.1207	8.1e-05	1	CCTATTTTCATTT
POU2F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	10	22	-	10.1207	8.1e-05	1	CCTATTTTCATTT
POU2F2	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	44	56	+	10.1207	8.1e-05	1	CCTATTTTCATTT
CEBPE	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	56	65	-	11.3636	8.11e-05	0.729	GTTATGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	56	65	-	11.3636	8.11e-05	0.729	GTTATGCAAC
CEBPE	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	56	65	-	11.3636	8.11e-05	0.729	GTTATGCAAC
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	56	65	-	11.3636	8.11e-05	0.729	GTTATGCAAC
CEBPE	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	50	59	+	11.3636	8.11e-05	0.729	GTTATGCAAC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	7	16	-	11.5918	8.11e-05	0.422	TCCACCTGGG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	7	16	-	11.5918	8.11e-05	0.422	TCCACCTGGG
TCF4	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	-	11.5918	8.11e-05	0.422	CGCAGCTGCG
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	-	11.5918	8.11e-05	0.422	CGCAGCTGCG
TCF4	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	+	11.5918	8.11e-05	0.422	CGCAGCTGCG
TCF4	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	41	50	+	11.5918	8.11e-05	0.422	TCCACCTGGG
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	+	11.5918	8.11e-05	0.422	CGCAGCTGCG
FEV	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	11.0577	8.11e-05	0.148	ACCGGAAAGA
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	11.0577	8.11e-05	0.148	ACCGGAAAGA
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	11.0577	8.11e-05	0.148	ACCGGAAAGA
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	11.0577	8.11e-05	0.148	ACCGGAAAGA
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	11.0577	8.11e-05	0.148	ACCGGAAAGA
NRF1	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	2	12	+	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	30	40	+	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.0.0	57	67	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.1	57	67	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.1.0	57	67	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	68	78	-	9.56364	8.11e-05	0.0229	GCACATGTGCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	75	85	-	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	75	85	-	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	75	85	-	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	75	85	-	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	75	85	-	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	98	108	+	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	98	108	+	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	98	108	+	9.56364	8.11e-05	0.0229	GAGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	97	107	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	97	107	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	103	113	-	9.56364	8.11e-05	0.0229	ACGGCGGCGCC
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	48	59	-	8.51613	8.11e-05	1	GCTTTAAATAGT
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	69	80	+	8.51613	8.11e-05	1	GCTTTAAATAGT
TAL1::TCF3	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	11	22	+	10.5506	8.11e-05	1	CGGCCAGCTGGC
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	93	104	-	10.5506	8.11e-05	1	CGGCCAGCTGGC
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	93	104	-	10.5506	8.11e-05	1	CGGCCAGCTGGC
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	93	104	-	10.5506	8.11e-05	1	CGGCCAGCTGGC
THAP1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	6	14	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	20	28	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	20	28	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	23	31	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__Enhancer.noflip.NA__chr1:12493563..12493677,+__1731.1.0.0	24	32	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	24	32	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	29	37	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	29	37	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	34	42	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	34	42	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	38	46	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	38	46	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	38	46	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	38	46	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.1.0	39	47	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180257947..180258061,+__678.1.0.0	39	47	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	58	66	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	61	69	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	61	69	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	61	69	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	63	71	+	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	FLIPPED__mrna.flip.antisense__chr2:63277906..63278020,-__2752.1.0.0	66	74	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	68	76	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	75	83	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	82	90	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	106	114	+	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	13	21	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.0.0	13	21	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2018415..2018529,-__171.1.1.0	13	21	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	25	33	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	25	33	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	25	33	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	25	33	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	25	33	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	32	40	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	37	45	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	37	45	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	37	45	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	37	45	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	41	49	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	41	49	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__mrna.flip.sense__chr2:63277906..63278020,+__1061.1.0.0	41	49	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	41	49	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	45	53	-	9.96053	8.11e-05	0.215	CTGCCCTCC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	73	81	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	73	81	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	101	109	-	9.96053	8.11e-05	0.215	CTGCCCCCA
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	101	109	-	9.96053	8.11e-05	0.215	CTGCCCCCA
MAX	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	15	24	-	11.8077	8.11e-05	0.298	CCCACGTGAG
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	15	24	-	11.8077	8.11e-05	0.298	CCCACGTGAG
MAX	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	+	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	45	54	+	11.8077	8.11e-05	0.298	CCCACGTGAG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	+	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	+	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	-	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	+	11.8077	8.11e-05	0.298	GGCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	95	104	-	11.8077	8.11e-05	0.298	CCCACGTGAG
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	28	38	+	11	8.11e-05	0.418	GTCATGACTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	28	38	+	11	8.11e-05	0.418	GTCATGACTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	32	42	-	11	8.11e-05	0.418	GTCATGACTCA
GLI2	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	51	62	-	9.98276	8.11e-05	0.33	CCGACCTCCCTG
KLF13	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	28	45	+	4	8.11e-05	0.335	AAGCCCCGCCCCTCTACG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	49	66	+	4	8.11e-05	0.335	TTAAAAGGCCTCCTTGTG
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	49	66	+	4	8.11e-05	0.335	TTAAAAGGCCTCCTTGTG
KLF13	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	70	87	-	4	8.11e-05	0.335	AAGCCCCGCCCCTCTACG
Hic1	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	33	41	+	11.0385	8.11e-05	0.516	ATGCCCGCC
Hic1	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	48	56	+	11.0385	8.11e-05	0.516	ATGCCCGCC
Hic1	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	55	63	-	11.0385	8.11e-05	0.516	ATGCCCGCC
Hic1	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	74	82	-	11.0385	8.11e-05	0.516	ATGCCCGCC
NHLH1	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	17	26	+	10.5517	8.11e-05	0.146	TGCACCTGCG
NHLH1	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	14	23	-	10.5517	8.11e-05	0.146	AACAGCTGAG
NHLH1	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	101	+	10.5517	8.11e-05	0.146	AACAGCTGAG
NHLH1	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	98	-	10.5517	8.11e-05	0.146	TGCACCTGCG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	26	35	+	10.3571	8.11e-05	0.0277	AGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	26	35	+	10.3571	8.11e-05	0.0277	AGGGCGGAGT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	6	20	-	10	8.11e-05	0.017	GCTCCACCCCAGGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	6	20	-	10	8.11e-05	0.017	GCTCCACCCCAGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	23	37	+	10	8.11e-05	0.017	GCTCCACCCCAGGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	23	37	+	10	8.11e-05	0.017	GCTCCACCCCAGGGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	26	40	+	10	8.11e-05	0.017	TCCCCGCTCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	26	40	+	10	8.11e-05	0.017	TCCCCGCTCTCCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	26	40	+	10	8.11e-05	0.017	TCCCCGCTCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	26	40	+	10	8.11e-05	0.017	TCCCCGCTCTCCCTC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	46	60	-	10	8.11e-05	0.017	CCTCCTCCTACTCGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	46	60	-	10	8.11e-05	0.017	CCTCCTCCTACTCGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	68	82	-	10	8.11e-05	0.017	GTTCCACCCCGGCTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	68	82	-	10	8.11e-05	0.017	GTTCCACCCCGGCTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	93	107	+	10	8.11e-05	0.017	CCCCCTCTCCCACCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	93	107	+	10	8.11e-05	0.017	CCCCCTCTCCCACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	93	107	+	10	8.11e-05	0.017	CCCCCTCTCCCACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	93	107	+	10	8.11e-05	0.017	CCCCCTCTCCCACCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	93	107	+	10	8.11e-05	0.017	CCCCCTCTCCCACCC
IRF7	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	43	56	-	8.19355	8.12e-05	0.771	AAGAAAGCAAATCT
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	7.63462	8.12e-05	0.216	ATCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	7.63462	8.12e-05	0.216	ATCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	7.63462	8.12e-05	0.216	ATCACGTGGC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	7.63462	8.12e-05	0.216	GCCACGTGAG
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	7.63462	8.12e-05	0.216	GCCACGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	7.63462	8.12e-05	0.216	GCCACGTGAG
STAT3	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	64	74	-	10.7755	8.12e-05	0.329	TTCCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	65	75	-	10.7755	8.12e-05	0.329	TTCCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	65	75	-	10.7755	8.12e-05	0.329	TTCCTGGGAAG
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	5	25	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	5	25	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	5	25	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	5	25	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	5	25	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	37	57	-	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	58	78	+	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	58	78	+	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	58	78	+	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
IRF1	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	90	110	+	8.5	8.12e-05	0.187	CTTTGCTTCCTTTTCCGGTGT
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	7	16	-	11.0101	8.12e-05	0.182	GGAGGGGAAC
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	34	43	-	11.0101	8.12e-05	0.182	GGAGGGGAAC
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	73	82	+	11.0101	8.12e-05	0.182	GGAGGGGAAC
HES5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	+	1.93103	8.12e-05	0.298	TGGCACTTGTCA
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	+	1.93103	8.12e-05	0.298	TGGCACTTGTCA
HOXC13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	76	86	+	10.3065	8.12e-05	1	GGTCATAAAAA
HOXC13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	76	86	+	10.3065	8.12e-05	1	GGTCATAAAAA
EBF1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	99	112	+	8.65574	8.12e-05	0.365	AGCCGCTTGGGACT
ELK4	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	97	107	-	10.9273	8.12e-05	0.0725	TTGCTTCCTGC
ELK4	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	8	18	+	10.9273	8.12e-05	0.0725	TTGCTTCCTGC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	40	53	-	5.78049	8.12e-05	0.501	TCTGCTCCCGGCCG
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	40	53	-	5.78049	8.12e-05	0.501	TCTGCTCCCGGCCG
MTF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	58	71	+	5.78049	8.12e-05	0.501	TGTGCGCACTGCCT
MTF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	58	71	+	5.78049	8.12e-05	0.501	TGTGCGCACTGCCT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	75	88	-	5.78049	8.12e-05	0.501	TCTGCTCCCGGCCG
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	75	88	-	5.78049	8.12e-05	0.501	TCTGCTCCCGGCCG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	2	22	-	9.26531	8.12e-05	0.0217	GGGGCCGGGGCCTAGGGAGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	3	23	-	9.26531	8.12e-05	0.0217	AGTGAAGGGAAGAGGGAGGCA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	8	28	-	9.26531	8.12e-05	0.0217	AGTGAAGGGAAGAGGGAGGCA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	19	39	-	9.26531	8.12e-05	0.0217	TAAGAAGTGGGTGGAGAGAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	48	68	-	9.26531	8.12e-05	0.0217	GAGGGAAGGGGTGGGAAGCAG
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	64	84	-	9.26531	8.12e-05	0.0217	AAAGGACAGTGTGGGAAAGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	70	90	-	9.26531	8.12e-05	0.0217	GAGAGAGAGAGAGAGTGAGGT
ZNF263	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	25	45	+	9.26531	8.12e-05	0.0217	GAGAGAGAGAGAGAGTGAGGT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	26	46	+	9.26531	8.12e-05	0.0217	GGAGGAGGGCTTGCGGGGCTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	26	46	+	9.26531	8.12e-05	0.0217	GGAGGAGGGCTTGCGGGGCTG
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	32	52	+	9.26531	8.12e-05	0.0217	AAAGGACAGTGTGGGAAAGGG
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	32	52	+	9.26531	8.12e-05	0.0217	AAAGGACAGTGTGGGAAAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	59	79	+	9.26531	8.12e-05	0.0217	AGTGCAGGAACAGCAAGAAGC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	87	107	+	9.26531	8.12e-05	0.0217	AGTGAAGGGAAGAGGGAGGCA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	92	112	+	9.26531	8.12e-05	0.0217	AGTGAAGGGAAGAGGGAGGCA
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	27	38	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	64	75	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	86	97	+	8.49091	8.12e-05	0.127	TTTCCGGAAGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	8	22	+	5.7931	8.12e-05	0.0418	CTCAGCCCCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	8	22	+	5.7931	8.12e-05	0.0418	CTCAGCCCCCGCCTG
EGR3	WILDTYPE__mrna.flip.sense__chr5:52405550..52405664,-__1207.1.0.0	8	22	-	5.7931	8.12e-05	0.0418	CTCAGCCCCCGCCTG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	36	50	+	5.7931	8.12e-05	0.0418	CGCCCCCCGCGCGCA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	36	50	+	5.7931	8.12e-05	0.0418	CGCCCCCCGCGCGCA
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	36	50	+	5.7931	8.12e-05	0.0418	CGCCCCCCGCGCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	36	50	+	5.7931	8.12e-05	0.0418	CGCCCCCCGCGCGCA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	69	83	-	5.7931	8.12e-05	0.0418	ACTCGCCCCCCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	69	83	-	5.7931	8.12e-05	0.0418	ACTCGCCCCCCCGCC
EGR3	FLIPPED__mrna.flip.antisense__chr5:52405550..52405664,+__2514.1.0.0	93	107	+	5.7931	8.12e-05	0.0418	CTCAGCCCCCGCCTG
EGR3	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	93	107	-	5.7931	8.12e-05	0.0418	CTCAGCCCCCGCCTG
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	97	106	+	11.4138	8.13e-05	0.859	ACCAGCTGGG
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	97	106	+	11.4138	8.13e-05	0.859	ACCAGCTGGG
HOXD12	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	79	-	10.5082	8.13e-05	1	AGTCATTAAAT
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	86	100	+	10.5586	8.13e-05	0.188	GGAGGTCAGAAGTCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	20	34	-	10.5586	8.13e-05	0.188	GGGGGGGAAAAGGCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	89	108	+	3.11009	8.13e-05	0.0717	CCACCGCTCAACCCAGAACA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	89	108	+	3.11009	8.13e-05	0.0717	CCACCGCTCAACCCAGAACA
REST	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	56	76	-	4.61224	8.13e-05	0.235	CTCAGGAGCAGGGAGACAGCG
REST	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	39	59	+	4.61224	8.13e-05	0.235	CTCAGGAGCAGGGAGACAGCG
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	32	43	+	11.0222	8.13e-05	1	TAGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	32	43	+	11.0222	8.13e-05	1	TAGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	32	43	+	11.0222	8.13e-05	1	TAGTGCACTCCC
Ddit3::Cebpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	32	43	+	11.0222	8.13e-05	1	TAGTGCACTCCC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	12	29	+	-15.5395	8.13e-05	0.0547	GGGAGGGGAGAGGGAGGA
XBP1	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	6	19	-	9.36538	8.13e-05	0.529	CTCTCCACGTAATC
XBP1	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	96	109	+	9.36538	8.13e-05	0.529	CTCTCCACGTAATC
KLF16	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	22	32	+	10.1552	8.13e-05	0.0253	ACCACCCCTCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	83	93	-	10.1552	8.13e-05	0.0253	ACCACCCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	95	105	+	10.1552	8.13e-05	0.0253	TGCACGCCCAC
SP4	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	28	44	-	3.12727	8.13e-05	0.0329	CTCGCACCGCCCCTCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	53	69	-	3.12727	8.13e-05	0.0329	CCACCCCCTCCCCCCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	53	69	-	3.12727	8.13e-05	0.0329	CCACCCCCTCCCCCCTC
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	22	36	-	8.16393	8.13e-05	0.494	ATGACTCAGGCTAGT
Zfx	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	33	46	-	10.3485	8.13e-05	0.0664	GGAAGCAAGGCCTA
Zfx	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	69	82	+	10.3485	8.13e-05	0.0664	GGAAGCAAGGCCTA
Zfx	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	67	80	-	10.3485	8.13e-05	0.0664	TAGCCCAGGGCCTG
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	89	101	-	9.24286	8.13e-05	0.763	TCTGCAGCTGTTT
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	89	101	-	9.24286	8.13e-05	0.763	TCTGCAGCTGTTT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	11.1818	8.13e-05	0.142	TCCGGAAGCT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	6	16	+	10.6545	8.13e-05	0.0718	TCCCCCCGGCA
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	89	99	+	10.6545	8.13e-05	0.0718	TCCCCCCGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	16	26	-	10.6545	8.13e-05	0.0718	TCCCCCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	16	26	-	10.6545	8.13e-05	0.0718	TCCCCCCGGCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	99	109	-	10.6545	8.13e-05	0.0718	TCCCCCCGGCA
SP1	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	24	34	+	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
SP1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	26	36	+	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
SP1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	19	29	-	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
SP1	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	41	51	-	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
SP1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	54	64	+	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	51	61	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	51	61	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	64	74	+	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	71	81	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	71	81	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	71	81	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	71	81	-	10.4808	8.13e-05	0.0192	GGCCCACCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	81	91	-	10.4808	8.13e-05	0.0192	GTCCCTCCCAG
Klf1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	18	28	+	10.3939	8.13e-05	0.054	CGCCACTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	27	37	+	10.3939	8.13e-05	0.054	TCCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	27	37	+	10.3939	8.13e-05	0.054	TCCCCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	29	39	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	36	46	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	36	46	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	33	43	-	10.3939	8.13e-05	0.054	CGACCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	55	65	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	55	65	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	55	65	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	45	55	-	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	55	65	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	55	65	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	50	60	-	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	60	70	+	10.3939	8.13e-05	0.054	AGTCCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	78	88	-	10.3939	8.13e-05	0.054	TCCCCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	87	97	-	10.3939	8.13e-05	0.054	CGCCACTCCCC
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	101	112	-	10.9082	8.13e-05	0.0874	ACCCCACAGGCA
GLIS3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	65	+	3.12121	8.13e-05	0.379	CGCCCCCCGGGGTG
GLIS3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	50	63	-	3.12121	8.13e-05	0.379	CGCCCCCCGGGGTG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	81	99	+	8.2623	8.13e-05	0.132	GAGTCACTGGATGGCAGGA
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	33	43	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	33	43	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	33	43	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	33	43	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.0	42	52	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.0.0	42	52	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.2.1	42	52	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:222763224..222763338,+__52.1.1.0	42	52	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	73	83	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	79	89	+	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	26	36	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	32	42	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	FLIPPED__Antisense.flip.antisense__chr1:222763224..222763338,-__2619.1.0.0	63	73	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	72	82	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	79	89	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	79	89	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	79	89	-	9.83636	8.13e-05	0.269	CCCCGGAAGTG
NFKB2	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	58	70	+	7.66667	8.14e-05	0.264	GAGGAGTTCCCCT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	89	99	+	11.0345	8.14e-05	0.289	CTGTGTGGTCT
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	-	10.6143	8.14e-05	0.244	GACAGCTGTG
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	-	10.6143	8.14e-05	0.244	GACAGCTGTG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	-	10.6143	8.14e-05	0.244	GACAGCTGTA
Ascl2	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	+	10.6143	8.14e-05	0.244	GACAGCTGTG
Ascl2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	+	10.6143	8.14e-05	0.244	GACAGCTGTG
RXRB	WILDTYPE__Lincrna.noflip.NA__chr2:232379053..232379167,-__423.1.0.0	10	23	+	-0.0363636	8.14e-05	0.554	TGGTTCAGGGGTTG
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	85	96	-	11.0337	8.14e-05	0.865	CAGCTGCTGACT
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	85	96	-	11.0337	8.14e-05	0.865	CAGCTGCTGACT
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:208527022..208527136,+__420.1.0.0	83	99	-	-6.65455	8.14e-05	1	GAGGGCAGAAAGGGAAA
Crx	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	5	15	-	10.9828	8.14e-05	1	TAGGGGCTTAA
Crx	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	100	110	+	10.9828	8.14e-05	1	TAGGGGCTTAA
PITX3	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	38	46	+	11.0192	8.14e-05	1	CGTAATCCC
PITX3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	40	48	+	11.0192	8.14e-05	1	CGTAATCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	44	55	+	10.5263	8.14e-05	0.0366	AACACCCCTCCC
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	80	94	+	10	8.14e-05	0.34	GCCAGGAGAAAGTGG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	80	94	+	10	8.14e-05	0.34	GCCAGGAGAAAGTGG
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	38	52	-	10	8.14e-05	0.34	GCCAGGAGAAAGTGG
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	38	52	-	10	8.14e-05	0.34	GCCAGGAGAAAGTGG
INSM1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	96	107	-	9.32653	8.14e-05	0.194	AGCCTGGGGCTG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	16	26	-	10.8654	8.14e-05	0.0758	CGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	16	26	-	10.8654	8.14e-05	0.0758	CGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	63	+	10.8654	8.14e-05	0.0758	CGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	82	92	+	10.8654	8.14e-05	0.0758	AGCCTCAAGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	82	92	+	10.8654	8.14e-05	0.0758	AGCCTCAAGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	82	92	+	10.8654	8.14e-05	0.0758	AGCCTCAAGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	82	92	+	10.8654	8.14e-05	0.0758	AGCCTCAAGCC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	16	29	-	4.73469	8.14e-05	0.377	TGGCTCCTAGTCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	16	29	-	4.73469	8.14e-05	0.377	TGGCTCCTAGTCAG
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	86	99	+	4.73469	8.14e-05	0.377	TGGCTCCTAGTCAG
Klf12	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	35	49	+	7.77049	8.14e-05	0.0715	TCCCACACCCAGCCT
Klf12	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	40	54	+	7.77049	8.14e-05	0.0715	GGGGACGCCCTTGTC
Klf12	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	32	46	-	7.77049	8.14e-05	0.0715	GGCCACCCCCCATAC
Klf12	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	69	83	+	7.77049	8.14e-05	0.0715	GGCCACCCCCCATAC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	29	40	-	10.1724	8.14e-05	0.365	ACGCCCACCAGT
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	29	40	-	10.1724	8.14e-05	0.365	ACGCCCACCAGT
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.1	101	112	-	10.1724	8.14e-05	0.365	CCGCCCACCGGG
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	101	112	-	10.1724	8.14e-05	0.365	CCGCCCACCGGG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.0.0	101	112	-	10.1724	8.14e-05	0.365	CCGCCCACCGGG
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr16:3200525..3200639,+__1767.1.0.0	33	44	+	10.1724	8.14e-05	0.365	CCGCCCACCGGG
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	90	101	+	10.1724	8.14e-05	0.365	GCACCCACCCCA
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	58	68	-	11.2364	8.14e-05	0.721	TAGCACTCATG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	30	40	+	11.2364	8.14e-05	0.721	GGACACTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	30	40	+	11.2364	8.14e-05	0.721	GGACACTCAGC
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	+	9.82979	8.14e-05	0.246	CATGACTCACG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	-	9.82979	8.14e-05	0.246	CATGACTCACG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	-	9.82979	8.14e-05	0.246	CATGACTCACG
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	16	30	-	6.76316	8.15e-05	0.277	AAGATGAGTCAGAAG
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	76	90	-	6.76316	8.15e-05	0.277	ATTGTGACTCTGCCG
Znf423	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	8	22	-	5.17978	8.15e-05	0.369	CCCACCCTGAGGTCA
Znf423	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	60	74	+	5.17978	8.15e-05	0.369	CCCACCCTGAGGTCA
ZBTB33	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	53	67	-	9.89394	8.15e-05	0.122	CCCTCGTGATGTCCC
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	92	106	-	9.89394	8.15e-05	0.122	CGCCCGCGAGGCGCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	22	36	+	9.89394	8.15e-05	0.122	CCCTCACGAGGCCGT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	22	36	+	9.89394	8.15e-05	0.122	CCCTCACGAGGCCGT
ZBTB33	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	48	62	+	9.89394	8.15e-05	0.122	CCCTCGTGATGTCCC
RORA	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	50	59	-	11.5618	8.15e-05	0.973	TTTGAGGTCA
RORA	WILDTYPE__Enhancer.noflip.NA__chr1:121485108..121485222,+__1730.1.0.0	100	109	+	11.5618	8.15e-05	0.973	TTTGAGGTCA
NFATC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	59	68	-	10.4309	8.15e-05	0.956	AATTTCCGCT
NFATC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	59	68	-	10.4309	8.15e-05	0.956	AATTTCCGCT
GCM1	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	89	99	-	10.4694	8.15e-05	0.551	GATGCTGGCCC
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	36	47	-	10.9194	8.15e-05	0.281	GCGCCCACAGCA
ZBTB7C	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	52	63	-	10.9194	8.15e-05	0.281	CGGCCCACCGAG
JDP2(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	50	61	-	6.14286	8.15e-05	0.242	GATGAAGTCATA
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	19	32	-	5.76596	8.15e-05	0.104	TCCACCCCAGTGTG
EGR4	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	1	16	+	9.90909	8.15e-05	0.0414	CGCCGGCCACGCCCAC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	12	27	-	9.90909	8.15e-05	0.0414	CTCCTCCCACGTCTCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	51	66	-	9.90909	8.15e-05	0.0414	CTCCTCCCACGTCTCT
MEF2C	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	100	114	+	10.6102	8.15e-05	1	AGAATAAAAACAGAA
JUNB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	2	12	+	10.6735	8.15e-05	0.236	AGCTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	2	12	+	10.6735	8.15e-05	0.236	AGCTGACTCAC
JUNB	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	6	16	+	10.6735	8.15e-05	0.236	AGATGAGTAAG
JUNB	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	41	51	-	10.6735	8.15e-05	0.236	AGCTGACTCAC
JUNB	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	55	65	-	10.6735	8.15e-05	0.236	AGCTGACTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	99	109	-	10.6735	8.15e-05	0.236	AGATGAGTAAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	99	109	-	10.6735	8.15e-05	0.236	AGATGAGTAAG
FOSL1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	15	25	+	10.0545	8.15e-05	0.246	GCTGAGTCACT
FOSL1	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	15	25	+	10.0545	8.15e-05	0.246	GCTGAGTCACT
FOSL1	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	9	19	-	10.0545	8.15e-05	0.246	GCTGAGTCACT
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	66	76	-	10.0545	8.15e-05	0.246	GCTGAGTCACT
FOSL1	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	91	101	-	10.0545	8.15e-05	0.246	GCTGAGTCACT
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	71	85	+	10.3846	8.15e-05	0.464	AGGGCACGCAGTGCC
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	71	85	+	10.3846	8.15e-05	0.464	AGGGCACGCAGTGCC
IRF9	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	34	48	-	-3.43636	8.15e-05	0.73	TATTAAAGTGAAAGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	34	44	+	10.3966	8.15e-05	0.0512	GCGCGGCAAAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	34	44	+	10.3966	8.15e-05	0.0512	GCGCGGCAAAG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	93	105	+	9.88525	8.16e-05	0.0589	CCCCGCCGGGGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	4	17	-	9.86538	8.16e-05	0.0287	CCGCAGCCGACGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	4	17	-	9.86538	8.16e-05	0.0287	CCGCAGCCGACGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	22	35	-	9.86538	8.16e-05	0.0287	TCCCCGCCTTCTCG
EGR1	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	22	35	-	9.86538	8.16e-05	0.0287	CCTCCTCCTTCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	33	46	-	9.86538	8.16e-05	0.0287	CTCTCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	33	46	-	9.86538	8.16e-05	0.0287	CTCTCGCTCCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	52	65	+	9.86538	8.16e-05	0.0287	CCTCCTCCTTCTCC
EGR1	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	56	69	+	9.86538	8.16e-05	0.0287	GCGCCGCTCTCGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	46	59	-	9.86538	8.16e-05	0.0287	GCGCCGCTCTCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	54	67	-	9.86538	8.16e-05	0.0287	TCCACACCCCCAGT
EGR1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	80	93	+	9.86538	8.16e-05	0.0287	TCCCCGCCTTCTCG
HMBOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	90	99	-	10.9516	8.16e-05	1	CTTAGTTAGC
HMBOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	90	99	-	10.9516	8.16e-05	1	CTTAGTTAGC
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	53	63	-	9.54545	8.16e-05	0.0229	ACGGGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	84	94	-	9.54545	8.16e-05	0.0229	CCGCCTGCGAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	84	94	-	9.54545	8.16e-05	0.0229	CCGCCTGCGAG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	84	94	-	9.54545	8.16e-05	0.0229	CCGCCTGCGAG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	84	94	-	9.54545	8.16e-05	0.0229	CCGCCTGCGAG
MAFF	WILDTYPE__Lincrna.noflip.NA__chr5:169758351..169758465,+__674.1.0.0	83	100	-	10.5333	8.16e-05	0.965	TCCTTCTCAGCAACTCCT
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	20	33	-	5.02041	8.16e-05	0.0744	GAGGCCTCCTGGGA
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	24	37	-	5.02041	8.16e-05	0.0744	GTGTGGCTGGGGTG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	32	45	+	5.02041	8.16e-05	0.0744	GTGTGGCTGGGGTG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	24	34	-	10.9091	8.16e-05	0.0727	TGGCTTCCTGT
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	24	34	-	10.9091	8.16e-05	0.0727	TGGCTTCCTGT
EMX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	80	89	+	10.2832	8.16e-05	1	ATTAATGACC
EMX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	80	89	+	10.2832	8.16e-05	1	ATTAATGACC
EMX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	80	89	+	10.2832	8.16e-05	1	ATTAATGACC
EMX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	80	89	+	10.2832	8.16e-05	1	ATTAATGACC
USF2	WILDTYPE__Lincrna.noflip.NA__chr9:71161496..71161610,-__909.1.0.0	19	29	+	10.9592	8.16e-05	0.163	CCCATGTGCCT
BATF3	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	81	94	-	0.121212	8.16e-05	0.246	AGCTGACATCAGAG
HSF4	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	62	74	+	10.4146	8.16e-05	1	TTCAGGAACATTC
RFX3	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	99	114	+	8.83333	8.16e-05	0.416	GGCTGCTTTAGAAACA
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	91	101	-	10.9636	8.16e-05	0.77	GCGGTTACAGG
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	91	101	-	10.9636	8.16e-05	0.77	GCGGTTACAGG
SOX8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	72	87	+	-13.7576	8.16e-05	1	AACCATATGCACTCTT
Foxo1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	25	35	+	11.2586	8.16e-05	0.902	CCTTGTTTTCT
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	81	91	+	11.2586	8.16e-05	0.902	CACTGTTTACA
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	81	91	+	11.2586	8.16e-05	0.902	CACTGTTTACA
Foxo1	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	96	106	+	11.2586	8.16e-05	0.902	CCTTGTTTTCT
Foxo1	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	9	19	-	11.2586	8.16e-05	0.902	CCTTGTTTTCT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	80	90	-	11.2586	8.16e-05	0.902	CCTTGTTTTCT
Esrra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	29	39	-	6.92727	8.16e-05	1	TCAAAGGTCAA
Esrra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	29	39	-	6.92727	8.16e-05	1	TCAAAGGTCAA
Esrra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	29	39	-	6.92727	8.16e-05	1	TCAAAGGTCAA
HSF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	11	23	+	8.56364	8.17e-05	1	TTCTGGAACAAAC
HSF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	11	23	+	8.56364	8.17e-05	1	TTCTGGAACAAAC
TFCP2	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	9	18	+	10.9394	8.17e-05	1	AAACTAGTTC
MAX::MYC	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	45	-	10.0204	8.17e-05	0.351	TGCCACGTGCC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	70	80	+	10.0204	8.17e-05	0.351	TGCCACGTGCC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	70	80	+	10.0204	8.17e-05	0.351	TGCCACGTGCC
MAX::MYC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	70	80	+	10.0204	8.17e-05	0.351	TGCCACGTGCC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	70	80	+	10.0204	8.17e-05	0.351	TGCCACGTGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	81	93	-	9.45902	8.17e-05	0.0644	TCCCCAGCAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	81	93	-	9.45902	8.17e-05	0.0644	TCCCCAGCAGGCG
Gata1	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	7	17	-	11.1429	8.17e-05	1	TTTTTATCTCA
HES5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	53	64	+	1.91379	8.17e-05	0.298	AAGCACGTGCGC
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	53	64	+	1.91379	8.17e-05	0.298	AAGCACGTGCGC
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	53	64	+	1.91379	8.17e-05	0.298	AAGCACGTGCGC
HES5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	53	64	+	1.91379	8.17e-05	0.298	AAGCACGTGCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	11	27	+	3.10909	8.17e-05	0.0329	CGGGCCCCGGCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	11	27	+	3.10909	8.17e-05	0.0329	CGGGCCCCGGCCCTGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	11	27	+	3.10909	8.17e-05	0.0329	CGGGCCCCGGCCCTGCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	11	27	+	3.10909	8.17e-05	0.0329	CGGGCCCCGGCCCTGCC
SP4	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	48	64	+	3.10909	8.17e-05	0.0329	GCGATCCCGCCCCTTCG
SP4	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	51	67	-	3.10909	8.17e-05	0.0329	GCGATCCCGCCCCTTCG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	68	84	-	3.10909	8.17e-05	0.0329	TGAGCGCCGCCCTCATC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	68	84	-	3.10909	8.17e-05	0.0329	TGAGCGCCGCCCTCATC
SP4	WILDTYPE__Lincrna.noflip.NA__chr7:35840191..35840305,-__806.1.0.0	84	100	-	3.10909	8.17e-05	0.0329	CCAGCCGCGCCTCTTTG
EGR3	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	9	23	-	5.77586	8.17e-05	0.0418	CCGCTCCCCCGCGCG
EGR3	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	17	31	-	5.77586	8.17e-05	0.0418	CCCCGCCCCCGGCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	19	33	-	5.77586	8.17e-05	0.0418	CCCCTCCCGCGCCTT
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	82	96	+	5.77586	8.17e-05	0.0418	CCCCTCCCGCGCCTT
BARHL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	52	61	-	10.54	8.17e-05	1	GTTAAATGAT
HINFP	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	10	21	+	10.3182	8.17e-05	0.109	CGCCCTCCGCGG
HINFP	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	28	39	-	10.3182	8.17e-05	0.109	CTGCCTCCGCGC
HINFP	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	46	57	-	10.3182	8.17e-05	0.109	CGCCCTCCGCGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	76	87	+	10.3182	8.17e-05	0.109	CTGCCTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	76	87	+	10.3182	8.17e-05	0.109	CTGCCTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	89	100	+	10.3182	8.17e-05	0.109	CGGCGTCCGGCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	89	100	+	10.3182	8.17e-05	0.109	CGGCGTCCGGCC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	89	100	+	10.3182	8.17e-05	0.109	CGGCGTCCGGCC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	94	105	+	10.3182	8.17e-05	0.109	GGCGGTCCGCAG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	94	105	+	10.3182	8.17e-05	0.109	GGCGGTCCGCAG
SPIC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	3	16	-	10.5493	8.17e-05	0.29	GAGATGGGGAAGTG
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.0.0	3	16	-	10.5493	8.17e-05	0.29	GAGATGGGGAAGTG
POU3F3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	39	51	+	10.54	8.17e-05	1	CGTATGGAAATTA
POU3F3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	39	51	+	10.54	8.17e-05	1	CGTATGGAAATTA
POU3F3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	39	51	+	10.54	8.17e-05	1	CGTATGGAAATTA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	97	107	-	10.6034	8.17e-05	0.0787	CGGAGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	97	107	-	10.6034	8.17e-05	0.0787	CGGAGGGAGGA
E2F6	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	15	25	+	10.6034	8.17e-05	0.0787	CGGAGGGAGGA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	3	13	+	10.6364	8.17e-05	0.0718	GGCCTCAGGGA
Stat4	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	45	58	+	10.9138	8.17e-05	0.357	GTGCTAGGAACCTG
Stat4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	81	94	+	10.9138	8.17e-05	0.357	GTGCTAGGAACCTG
SPI1	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	40	53	+	2.14545	8.17e-05	0.249	TAAATAAAGAAGTA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	1	11	+	9.95082	8.17e-05	0.183	GGCCGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	1	11	+	9.95082	8.17e-05	0.183	GGCCGGAAGTG
ETV2	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	27	37	+	9.95082	8.17e-05	0.183	GGCCGGAAGTG
ETV2	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	46	56	+	9.95082	8.17e-05	0.183	TAGCGGAAACC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	59	69	-	9.95082	8.17e-05	0.183	TAGCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	59	69	-	9.95082	8.17e-05	0.183	TAGCGGAAACC
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	78	88	-	9.95082	8.17e-05	0.183	GGCCGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	78	88	-	9.95082	8.17e-05	0.183	GGCCGGAAGTG
NR3C1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	62	78	+	4.53061	8.17e-05	1	GGGCCCAGGGTGTCCCC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	1	15	+	10.5495	8.17e-05	0.188	CGGGGCCTGAGGTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	30	44	+	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	30	44	+	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	30	44	+	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	30	44	+	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	28	42	-	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	28	42	-	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	28	42	-	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	28	42	-	10.5495	8.17e-05	0.188	TTGGTACAGAGGTGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	56	70	-	10.5495	8.17e-05	0.188	CGGGGCCTGAGGTCA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	82	96	-	10.5495	8.17e-05	0.188	GTAGGTCCAGGGTGA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	63	76	-	10.4194	8.17e-05	0.499	CTTTCTGGAGGGCT
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	45	58	+	10.4194	8.17e-05	0.499	CTTTCTGGAGGGCT
Bcl6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	93	106	+	10.4194	8.17e-05	0.499	ATTCCTGGACGCAC
Bcl6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	93	106	+	10.4194	8.17e-05	0.499	ATTCCTGGACGCAC
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	32	49	+	-15.5658	8.17e-05	0.0547	GGGTGAAGAGGAGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	66	83	-	-15.5658	8.17e-05	0.0547	GGGTGAAGAGGAGGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	66	83	-	-15.5658	8.17e-05	0.0547	GGGTGAAGAGGAGGCAGG
TCF3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	38	47	-	12	8.17e-05	0.404	CCCACCTGTA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	29	43	+	9.98276	8.18e-05	0.0171	CCTCCTCCTCCACAC
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	37	51	+	9.98276	8.18e-05	0.0171	CTCCCTCCTCTGGGA
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	27	41	-	9.98276	8.18e-05	0.0171	CCCCCACCCCGCCAA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	29	43	-	9.98276	8.18e-05	0.0171	ACACCGCCCACTCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	29	43	-	9.98276	8.18e-05	0.0171	ACACCGCCCACTCGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	34	48	-	9.98276	8.18e-05	0.0171	CTCCCTCCCATGGCT
SP2	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	49	63	+	9.98276	8.18e-05	0.0171	AGCCTGCCTCCCTCC
SP2	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	55	69	+	9.98276	8.18e-05	0.0171	CCCCCGCTCCGCTCC
SP2	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	52	66	-	9.98276	8.18e-05	0.0171	AGCCTGCCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.0.0	93	107	-	9.98276	8.18e-05	0.0171	ATCCCTCCCTCCATC
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:115085410..115085524,-__928.1.1.0	93	107	-	9.98276	8.18e-05	0.0171	ATCCCTCCCTCCATC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	7	19	+	7.65152	8.18e-05	0.264	CCGGGGACCCCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	7	19	+	7.65152	8.18e-05	0.264	CCGGGGACCCCCT
NFKB2	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	101	113	-	7.65152	8.18e-05	0.264	AGGTGCAGTCCCT
Tcf12	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	95	105	-	11.3061	8.18e-05	0.196	AACAGGTGTGG
Tcf12	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	20	+	11.3061	8.18e-05	0.196	AACAGGTGTGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	23	+	11.3061	8.18e-05	0.196	CGCAGCTGGGT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	23	+	11.3061	8.18e-05	0.196	CGCAGCTGGGT
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	35	47	-	10.4098	8.18e-05	0.359	CGGGCTCCCACCC
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	96	108	-	10.4098	8.18e-05	0.359	CGGGCTCCCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	7	19	+	10.4098	8.18e-05	0.359	CGGGCTCCCACCC
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	68	80	+	10.4098	8.18e-05	0.359	CGGGCTCCCACCC
INSM1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	14	25	+	9.30612	8.18e-05	0.194	AGGATGGGGGTG
INSM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.0.0	23	34	+	9.30612	8.18e-05	0.194	AGGATGGGGGTG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.1	23	34	+	9.30612	8.18e-05	0.194	AGGATGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.1.0	23	34	+	9.30612	8.18e-05	0.194	AGGATGGGGGTG
INSM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:60759312..60759426,+__132.1.2.0	23	34	+	9.30612	8.18e-05	0.194	AGGATGGGGGTG
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	25	35	+	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	33	43	+	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	33	43	+	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	28	38	-	11.0182	8.18e-05	0.0554	CGCCTCACGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	28	38	-	11.0182	8.18e-05	0.0554	CGCCTCACGCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	52	62	-	11.0182	8.18e-05	0.0554	TGCCTCCAGCT
TFAP2A	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	77	87	+	11.0182	8.18e-05	0.0554	CGCCTCACGCC
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	72	82	-	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	80	90	-	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	80	90	-	11.0182	8.18e-05	0.0554	CGCCGCAAGCC
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	104	114	-	11.0182	8.18e-05	0.0554	TGCCTCCAGCT
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	17	26	-	10.3091	8.18e-05	0.655	GTCAGCTGAG
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	17	26	-	10.3091	8.18e-05	0.655	GTCAGCTGAG
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	59	68	+	10.3091	8.18e-05	0.655	GTCAGCTGAG
PAX9	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	25	41	+	-0.381818	8.18e-05	0.563	AGTCATGATTCACTGAA
PAX9	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	37	53	-	-0.381818	8.18e-05	0.563	AGTCATGATTCACTGAA
PAX9	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	62	78	+	-0.381818	8.18e-05	0.563	AGTCATGATTCACTGAA
PAX9	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	74	90	-	-0.381818	8.18e-05	0.563	AGTCATGATTCACTGAA
TP73	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	27	44	+	8.03846	8.18e-05	0.667	GACTGGCCCTTACATGCT
Hand1::Tcf3	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	83	92	-	11.1685	8.18e-05	0.94	CGTCTGGAGT
SP8	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	26	37	-	10.5132	8.18e-05	0.0368	GCACCTCCCCCA
Sox3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	6	15	+	11.2759	8.18e-05	0.659	CCATTGTCTG
Sox3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	6	15	+	11.2759	8.18e-05	0.659	CCATTGTCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	9	22	-	10.3333	8.18e-05	0.0665	GGGCCCCCAGCCTG
Zfx	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	26	39	+	10.3333	8.18e-05	0.0665	GGGCCCCCAGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	76	89	-	10.3333	8.18e-05	0.0665	GGGCCCCCAGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	93	106	+	10.3333	8.18e-05	0.0665	GGGCCCCCAGCCTG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	23	37	+	9.98182	8.18e-05	0.111	CGCCCCCCACAAAGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	81	95	+	9.98182	8.18e-05	0.111	CACCGCCCGTGGGCA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	81	95	+	9.98182	8.18e-05	0.111	CACCGCCCGTGGGCA
CEBPD	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	50	59	+	11.0962	8.18e-05	0.805	GTTATGCAAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	56	65	-	11.0962	8.18e-05	0.805	GTTATGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	56	65	-	11.0962	8.18e-05	0.805	GTTATGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	56	65	-	11.0962	8.18e-05	0.805	GTTATGCAAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	56	65	-	11.0962	8.18e-05	0.805	GTTATGCAAC
RELA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.0.0	77	86	-	9.12245	8.18e-05	0.255	TGGGAATCCC
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	92	105	+	5.69737	8.18e-05	0.56	CCGCCAGCTGGAAC
Tcf21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	92	105	+	5.69737	8.18e-05	0.56	CCGCCAGCTGGAAC
Tcf21	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	83	96	-	5.69737	8.18e-05	0.56	GAGACCGCTGTAGC
SRY	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	77	85	-	10.6222	8.18e-05	1	CAAAACAAT
MNT	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	11.8788	8.18e-05	0.338	GACACGTGAT
MNT	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	11.8788	8.18e-05	0.338	GACACGTGAT
Foxj3	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	78	94	-	10.8961	8.18e-05	1	GAGAAATAAACAAGTGG
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	61	73	+	1.42857	8.19e-05	0.258	AGGGGAAGCGCCC
Vdr	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	38	53	-	3.36066	8.19e-05	0.833	GGGCTCGGGGAGGTCA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	38	51	-	5.0102	8.19e-05	0.0744	GGGTGGGACTGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	38	51	-	5.0102	8.19e-05	0.0744	GGGTGGGACTGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	53	66	-	5.0102	8.19e-05	0.0744	GGGGCCCGGGGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	53	66	-	5.0102	8.19e-05	0.0744	GGGGCCCGGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	53	66	-	5.0102	8.19e-05	0.0744	GGGGCCCGGGGAGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	53	66	-	5.0102	8.19e-05	0.0744	GGGGCCCGGGGAGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	76	89	-	5.0102	8.19e-05	0.0744	GGGTGGGACTGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	17	30	+	5.0102	8.19e-05	0.0744	GGGGCCAGCCGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	17	30	+	5.0102	8.19e-05	0.0744	GGGGCCAGCCGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	17	30	+	5.0102	8.19e-05	0.0744	GGGGCCAGCCGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	17	30	+	5.0102	8.19e-05	0.0744	GGGGCCAGCCGGGG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	50	63	+	5.0102	8.19e-05	0.0744	GAGGCTCAGAGAGG
BHLHE23	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	68	79	+	9.32727	8.19e-05	1	AAGCATAAGTTT
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	1	15	+	-6.51429	8.19e-05	0.998	GTGGTCACATGGACA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	1	15	+	-6.51429	8.19e-05	0.998	GTGGTCACATGGACA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.1.0	22	36	-	-6.51429	8.19e-05	0.998	GTGGTCACATGGACA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	22	36	-	-6.51429	8.19e-05	0.998	GTGGTCACATGGACA
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	5	16	-	7.72477	8.19e-05	0.855	TGACTGCTGGCA
TGIF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	7	18	+	7.72477	8.19e-05	0.855	TGACTGCTGGCA
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	7	18	+	7.72477	8.19e-05	0.855	TGACTGCTGGCA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	7	18	+	7.72477	8.19e-05	0.855	TGACTGCTGGCA
TGIF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	7	18	+	7.72477	8.19e-05	0.855	TGACTGCTGGCA
KLF13	WILDTYPE__Lincrna.noflip.NA__chr7:35840191..35840305,-__806.1.0.0	82	99	-	3.96552	8.19e-05	0.337	CAGCCGCGCCTCTTTGCC
MLXIPL	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	-	11.2424	8.19e-05	0.297	GTCACGTGGG
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	+	11.2424	8.19e-05	0.297	GTCACGTGGG
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	+	11.2424	8.19e-05	0.297	GTCACGTGGG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	+	11.2424	8.19e-05	0.297	GTCACGTGGG
MLXIPL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	+	11.2424	8.19e-05	0.297	GTCACGTGGG
KLF16	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	15	25	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	30	40	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	30	40	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	30	40	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	38	48	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	51	61	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	51	61	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	51	61	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	56	66	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	49	59	-	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	67	77	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	90	100	+	10.1379	8.19e-05	0.0253	GCCCCACCCCG
GSC	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	17	26	+	11.0755	8.19e-05	1	GTTAATCCCG
GSC	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	89	98	-	11.0755	8.19e-05	1	GTTAATCCCG
Dmbx1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	39	55	-	11.0132	8.19e-05	1	GAGACGGGATTAAAAAA
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	7	16	+	10.4364	8.19e-05	1	AAGGTGTCAT
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	7	16	+	10.4364	8.19e-05	1	AAGGTGTCAT
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	27	36	+	10.4364	8.19e-05	1	AAGGTGTCAT
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	27	36	+	10.4364	8.19e-05	1	AAGGTGTCAT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	91	105	+	9.13636	8.19e-05	0.355	CCTGTTTCAGCTCCC
SP3	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	16	+	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	14	24	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	15	25	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	17	27	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	32	42	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	32	42	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	32	42	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	52	62	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	54	64	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	54	64	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	58	68	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	59	69	+	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	59	69	+	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	59	69	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	93	103	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	93	103	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	103	113	+	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	2	12	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	25	35	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	25	35	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	28	38	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	28	38	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	28	38	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	29	39	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	29	39	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	29	39	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	29	39	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	42	52	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	46	56	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	46	56	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	47	57	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	53	63	-	10.7724	8.19e-05	0.0259	GTCCCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	61	71	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	61	71	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	61	71	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	61	71	-	10.7724	8.19e-05	0.0259	GCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	71	81	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	71	81	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
SP3	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	99	109	-	10.7724	8.19e-05	0.0259	GCCCCGCCTCG
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	17	36	-	3.08257	8.19e-05	0.0718	CCACCTCCCTCCCACCCTGT
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	17	36	-	3.08257	8.19e-05	0.0718	CCACCTCCCTCCCACCCTGT
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	22	41	-	3.08257	8.19e-05	0.0718	CACGCCCCCGCCCCCCAAGA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	58	77	+	3.08257	8.19e-05	0.0718	CACGCCCCCGCCCCCCAAGA
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	15	24	-	10.102	8.19e-05	0.888	GTTGTGCAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	15	24	-	10.102	8.19e-05	0.888	GTTGTGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	15	24	-	10.102	8.19e-05	0.888	GTTGTGCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	57	66	+	10.102	8.19e-05	0.888	GTTGTGCAAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	57	66	+	10.102	8.19e-05	0.888	GTTGTGCAAC
IRF8	WILDTYPE__Lincrna.noflip.NA__chr5:18746230..18746344,-__683.1.0.0	28	41	-	-3.43636	8.2e-05	0.788	GTGAAAGCAAAAGT
IRF8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.0.0	40	53	-	-3.43636	8.2e-05	0.788	GTGAAAGCAAAAGT
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:86400970..86401084,+__306.1.1.0	40	53	-	-3.43636	8.2e-05	0.788	GTGAAAGCAAAAGT
IRF8	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	71	84	-	-3.43636	8.2e-05	0.788	AGGAGACCGAAACC
Myod1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	64	+	11.3061	8.2e-05	0.193	GACAGCTGTGTTC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.0.0	58	71	-	10.7692	8.2e-05	0.228	AGAGGGTGACACAC
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	82	95	+	10.7692	8.2e-05	0.228	AGAGGGTGACACAC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	66	77	-	10.9636	8.2e-05	0.0579	CCCCGCCAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	66	77	-	10.9636	8.2e-05	0.0579	CCCCGCCAGGCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:174090228..174090342,-__617.1.0.0	81	92	+	10.9636	8.2e-05	0.0579	CCCCCTCGGCCC
TBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	47	61	+	10.8889	8.2e-05	0.68	CTTTAAAAGGCCTCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	47	61	+	10.8889	8.2e-05	0.68	CTTTAAAAGGCCTCC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	73	86	-	6.97143	8.2e-05	0.227	GGGTGACGTCGCAT
JUND(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	16	30	+	10.0638	8.2e-05	0.363	GGCGGTGAGCTCACC
JUND(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	48	62	-	10.0638	8.2e-05	0.363	GGCGGTGAGCTCACC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	48	62	-	10.0638	8.2e-05	0.363	GGCGGTGAGCTCACC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	56	73	+	-15.5789	8.2e-05	0.0547	GGGGTGGAGGAAGCAGAA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	16	33	-	-15.5789	8.2e-05	0.0547	GGAGGGGGAGGGGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	75	92	-	-15.5789	8.2e-05	0.0547	AAAAAAAGGCAAGGAAAA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	80	97	-	-15.5789	8.2e-05	0.0547	TGAAGGGAGGTGGGAGAG
NKX2-8	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	86	94	+	10.8269	8.2e-05	1	GCACTCGAC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	28	37	+	9.65517	8.2e-05	0.249	ATCACGCGAG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	28	37	+	9.65517	8.2e-05	0.249	ATCACGCGAG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	28	37	+	9.65517	8.2e-05	0.249	ATCACGCGAG
Srebf1(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	78	87	-	9.65517	8.2e-05	0.249	ATCACGCGAG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	30	39	+	10.9344	8.2e-05	0.726	GATGGGGGTT
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	30	39	+	10.9344	8.2e-05	0.726	GATGGGGGTT
GLI2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	1	12	-	9.96552	8.2e-05	0.33	GCGGCCACGAAG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	36	47	-	9.96552	8.2e-05	0.33	GAGACCACGCGC
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	36	47	-	9.96552	8.2e-05	0.33	GAGACCACGCGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	66	78	-	9.34483	8.2e-05	0.057	CCCCCGCCAGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	66	78	-	9.34483	8.2e-05	0.057	CCCCCGCCAGGCG
SOX9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	86	94	-	10.6707	8.2e-05	1	CTATTGATC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	2	14	+	7.74138	8.2e-05	0.181	CTTCCGGAAGTTG
JUND	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	13	23	+	9.7234	8.2e-05	0.246	GGTGACTAACG
JUND	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	13	23	+	9.7234	8.2e-05	0.246	GGTGACTAACG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	67	77	+	9.7234	8.2e-05	0.246	CGTGAGTCACG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	67	77	+	9.7234	8.2e-05	0.246	CGTGAGTCACG
JUND	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	35	45	-	9.7234	8.2e-05	0.246	CGTGAGTCACG
JUND	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	35	45	-	9.7234	8.2e-05	0.246	CGTGAGTCACG
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	103	-	10.0102	8.2e-05	0.351	AAACACGTGCC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	103	-	10.0102	8.2e-05	0.351	AAACACGTGCC
RARA	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	27	44	-	-10.4848	8.2e-05	1	TGGGTCTGTAGGTTAAGG
RARA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	71	88	+	-10.4848	8.2e-05	1	TGGGTCTGTAGGTTAAGG
RARA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	71	88	+	-10.4848	8.2e-05	1	TGGGTCTGTAGGTTAAGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	24	38	+	8.91429	8.2e-05	0.122	CGGGGGCTGGGGTCT
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	24	38	+	8.91429	8.2e-05	0.122	CGGGGGCTGGGGTCT
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	24	38	+	8.91429	8.2e-05	0.122	CGGGGGCTGGGGTCT
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	85	98	+	4.67347	8.2e-05	0.377	TGGCTCCTCGCCGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	5	25	-	9.2449	8.2e-05	0.0218	CGGGGAGGCGCTGGGAGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	5	25	-	9.2449	8.2e-05	0.0218	CGGGGAGGCGCTGGGAGGGGC
ZNF263	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	7	27	-	9.2449	8.2e-05	0.0218	GGGAGTGGCGGAGCGAGGGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	20	40	-	9.2449	8.2e-05	0.0218	GGAGGACCAAGGGAAAAGACC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	22	42	-	9.2449	8.2e-05	0.0218	CGGGGAGGCGCTGGGAGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	22	42	-	9.2449	8.2e-05	0.0218	CGGGGAGGCGCTGGGAGGGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	22	42	-	9.2449	8.2e-05	0.0218	AGGGCTGGGCCGGAGGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	59	79	-	9.2449	8.2e-05	0.0218	GAGGAAGCAGTAGCAAGGGGT
ZNF263	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	63	83	-	9.2449	8.2e-05	0.0218	GGGGAGGAGGAAGGAGGGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	91	111	-	9.2449	8.2e-05	0.0218	AAGGGGGTGGGAGAGGGGGGA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	91	111	-	9.2449	8.2e-05	0.0218	AAGGGGGTGGGAGAGGGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	25	45	+	9.2449	8.2e-05	0.0218	GGAGAGGGGTTGGCGGGAGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	30	50	+	9.2449	8.2e-05	0.0218	GGGAGGAGGCGGGGAGGAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	32	52	+	9.2449	8.2e-05	0.0218	GGGGAGGAGGAAGGAGGGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	88	108	+	9.2449	8.2e-05	0.0218	GGGAGTGGCGGAGCGAGGGAG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	15	24	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	15	24	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	15	24	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	15	24	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	46	55	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	49	58	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	63	72	+	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	57	66	-	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	59	68	-	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	60	69	-	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	60	69	-	11.1091	8.21e-05	0.142	AACGGAAGCC
ERG	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	91	100	-	11.1091	8.21e-05	0.142	AACGGAAGCC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	50	59	+	10.9697	8.21e-05	0.341	GGGCTTTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	50	59	+	10.9697	8.21e-05	0.341	GGGCTTTTCC
REL	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	56	65	-	10.9697	8.21e-05	0.341	GGGCTTTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	92	101	-	10.9697	8.21e-05	0.341	GGGCTTTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	92	101	-	10.9697	8.21e-05	0.341	GGGCTTTTCC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	22	34	+	9.44262	8.21e-05	0.0644	CGCCCACAAGGCC
Nfe2l2	WILDTYPE__mrna.noflip.NA__chr14:62203529..62203643,+__1020.1.0.0	78	92	+	9.33333	8.21e-05	0.362	TGGTATTATTCAGCA
SP4	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	9	25	+	3.09091	8.21e-05	0.033	TTAGCCTCGCCCATCTG
SP4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	17	33	-	3.09091	8.21e-05	0.033	AGGACCCCCCCCCCCGC
SP4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	82	98	+	3.09091	8.21e-05	0.033	AGGACCCCCCCCCCCGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	43	57	-	9.87879	8.21e-05	0.122	ACCCCGCGAGACGGG
ZBTB33	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	58	72	+	9.87879	8.21e-05	0.122	ACCCCGCGAGACGGG
SPI1	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	30	43	+	2.12727	8.21e-05	0.249	CAAAGGCGGACGTA
SPI1	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	72	85	-	2.12727	8.21e-05	0.249	CAAAGGCGGACGTA
Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	41	54	-	2.39024	8.21e-05	0.51	AGGGGCATAGGTTG
Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	41	54	-	2.39024	8.21e-05	0.51	AGGGGCATAGGTTG
Rxra	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	61	74	+	2.39024	8.21e-05	0.51	AGGGGCATAGGTTG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	26	38	+	9.86885	8.21e-05	0.0589	CCCCTCCCGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	26	38	+	9.86885	8.21e-05	0.0589	CCCCTCCCGGGCT
EGR3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	10	24	+	5.75862	8.21e-05	0.0418	CCCCCCCCCCCCGCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	32	46	+	5.75862	8.21e-05	0.0418	CCCCCCCCCCCCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	21	35	-	5.75862	8.21e-05	0.0418	GCCCGCCCGCCCGCA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	21	35	-	5.75862	8.21e-05	0.0418	GCCCGCCCGCCCGCA
EGR3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	45	59	+	5.75862	8.21e-05	0.0418	CCCCCCCCCCCCGCG
EGR3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	56	70	-	5.75862	8.21e-05	0.0418	CCCCCCCCCCCCGCG
EGR3	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	80	94	+	5.75862	8.21e-05	0.0418	GCCCGCCCGCCCGCA
EGR3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	91	105	-	5.75862	8.21e-05	0.0418	CCCCCCCCCCCCGCG
KLF14	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	4	17	+	8.27586	8.21e-05	0.0393	AGCTCCGCCCTCCC
KLF14	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	98	111	-	8.27586	8.21e-05	0.0393	AGCTCCGCCCTCCC
PBX1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	15	26	+	10.5714	8.21e-05	1	ATGTCAATCAAG
PBX1	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	29	40	-	10.5714	8.21e-05	1	ATGTCAATCAAG
PBX1	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	75	86	+	10.5714	8.21e-05	1	ATGTCAATCAAG
ETS1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	4	13	+	11.069	8.21e-05	0.118	TCCGGAAGTT
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	27	36	+	11.069	8.21e-05	0.118	TCCGGAAGTT
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	27	36	+	11.069	8.21e-05	0.118	TCCGGAAGTT
ETS1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	11.069	8.21e-05	0.118	ACCGGAAAGA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	11.069	8.21e-05	0.118	ACCGGAAAGA
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	11.069	8.21e-05	0.118	ACCGGAAAGA
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	11.069	8.21e-05	0.118	ACCGGAAAGA
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	11.069	8.21e-05	0.118	ACCGGAAAGA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	5	16	+	10.9273	8.21e-05	0.0924	CGCCCCTCGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	5	16	+	10.9273	8.21e-05	0.0924	CGCCCCTCGGCA
TFAP2B	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	13	24	+	10.9273	8.21e-05	0.0924	CGGCCGGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	6	17	-	10.9273	8.21e-05	0.0924	CGCCCCTCGGCA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	6	17	-	10.9273	8.21e-05	0.0924	CGCCCCTCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	-	10.9273	8.21e-05	0.0924	GGCCTGCGGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	-	10.9273	8.21e-05	0.0924	GGCCTGCGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	-	10.9273	8.21e-05	0.0924	GGCCTGCGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	-	10.9273	8.21e-05	0.0924	GGCCTGCGGGCG
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	84	-	10.9273	8.21e-05	0.0924	CCCCCGCCGGCA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	91	102	-	10.9273	8.21e-05	0.0924	CGGCCGGGGGCG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	-	5.06122	8.21e-05	0.378	GCTGAGTCATG
NFE2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	+	5.06122	8.21e-05	0.378	GCTGAGTCATG
ELK1	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	9.82979	8.21e-05	0.106	ACAGGAAGTA
ELK1	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	9.82979	8.21e-05	0.106	ACAGGAAGTA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	25	35	-	10.4918	8.22e-05	0.0749	CCGGAAACCGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	25	35	-	10.4918	8.22e-05	0.0749	CCGGAAACCGA
Gabpa	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	43	53	-	10.4918	8.22e-05	0.0749	CAGGAAGTAGT
Gabpa	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	62	72	+	10.4918	8.22e-05	0.0749	CAGGAAGTAGT
PLAG1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	27	40	-	5	8.22e-05	0.0745	GTGGCGCAAAGGGT
PLAG1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	75	88	+	5	8.22e-05	0.0745	GTGGCGCAAAGGGT
POU1F1	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	2	15	-	10.1724	8.22e-05	1	CCTATGCTAATTCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	24	34	+	9.52727	8.22e-05	0.0231	AAGCGCGCGCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr6:109288383..109288497,-__2103.1.0.0	19	33	+	10.5405	8.22e-05	0.188	CTGGGCCATAGGACA
TCF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	-	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	100	109	-	11.5714	8.22e-05	0.422	TCCACCTGGC
TCF4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	+	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	+	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	+	11.5714	8.22e-05	0.422	CGCAGCTGCC
TCF4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	+	11.5714	8.22e-05	0.422	CGCAGCTGCC
RREB1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	78	97	-	3.07339	8.22e-05	0.0718	CTCCACCCCTCCCGCCGCGG
RREB1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	18	37	+	3.07339	8.22e-05	0.0718	CTCCACCCCTCCCGCCGCGG
EOMES	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	5	17	+	10.8171	8.22e-05	1	AGGGTGTGATGCA
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	5	17	+	10.8171	8.22e-05	1	AGGGTGTGATGCA
EOMES	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	98	110	-	10.8171	8.22e-05	1	AGGGTGTGATGCA
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	42	55	+	1	8.22e-05	0.481	GCGGGCGAAGGTCA
RXRG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	42	55	+	1	8.22e-05	0.481	GCGGGCGAAGGTCA
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	42	55	+	1	8.22e-05	0.481	GCGGGCGAAGGTCA
RXRG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	42	55	+	1	8.22e-05	0.481	GCGGGCGAAGGTCA
RXRG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	42	55	+	1	8.22e-05	0.481	GCGGGCGAAGGTCA
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	79	92	+	1	8.22e-05	0.481	CAGTGCAAAGTGCA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	79	92	+	1	8.22e-05	0.481	CAGTGCAAAGTGCA
RXRG	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	60	73	-	1	8.22e-05	0.481	GCGGGCGAAGGTCA
ZBTB7A	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	86	97	-	10.5	8.22e-05	0.22	TCCGACGACCGC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	18	29	+	10.5	8.22e-05	0.22	TCCGACGACCGC
SOX21	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	11	25	+	0.77551	8.22e-05	1	TACAGTGTTAGTGAT
SP1	FLIPPED__Lincrna.flip.antisense__chr1:95285753..95285867,+__2337.1.0.0	32	42	-	10.4615	8.22e-05	0.0194	GGTCCGCCTCT
SP1	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	64	74	+	10.4615	8.22e-05	0.0194	TCCCTGCCCCC
SP1	WILDTYPE__Lincrna.flip.sense__chr1:95285753..95285867,-__100.1.0.0	73	83	+	10.4615	8.22e-05	0.0194	GGTCCGCCTCT
SP1	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	89	99	-	10.4615	8.22e-05	0.0194	TGCCCGCCCTT
INSM1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	41	52	-	9.28571	8.22e-05	0.194	TGGAAGCGGGAG
INSM1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	100	111	-	9.28571	8.22e-05	0.194	TGGAAGCGGGAG
INSM1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	4	15	+	9.28571	8.22e-05	0.194	TGGAAGCGGGAG
INSM1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	63	74	+	9.28571	8.22e-05	0.194	TGGAAGCGGGAG
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	36	56	+	8.46774	8.22e-05	0.187	CTTTCCTTTTTTTTTTTTCCT
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	36	56	+	8.46774	8.22e-05	0.187	CTTTCCTTTTTTTTTTTTCCT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	87	107	+	8.46774	8.22e-05	0.187	CACAGGTTCCGTTTTTCGTTC
EGR2	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	17	27	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	9	19	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	9	19	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	13	23	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	39	49	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	53	63	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	55	65	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	50	60	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	52	62	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	65	75	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	66	76	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	66	76	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	92	102	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	96	106	+	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	88	98	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	92	102	-	9.06897	8.22e-05	0.0862	CCGCCGCCGCG
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	100	-	11	8.22e-05	0.389	ACCACCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	100	-	11	8.22e-05	0.389	ACCACCTGCC
ID4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	100	-	11	8.22e-05	0.389	ACCACCTGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	34	44	+	10.6182	8.22e-05	0.0718	CGCCCTGGGCA
TAL1::TCF3	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	61	72	-	10.5169	8.22e-05	1	TGAACAGATGGA
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	92	106	+	10.0968	8.22e-05	1	CATTGTCATTCTAGG
Sox6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.1.0	67	76	+	11.3286	8.22e-05	0.878	CTATTGTTTC
Sox6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:119547394..119547508,-__770.1.0.0	67	76	+	11.3286	8.22e-05	0.878	CTATTGTTTC
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	90	99	+	11.3286	8.22e-05	0.878	CTATTGTTTC
Sox6	FLIPPED__Lincrna.flip.antisense__chr7:119547394..119547508,+__2423.1.0.0	39	48	-	11.3286	8.22e-05	0.878	CTATTGTTTC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	45	62	+	-15.5921	8.22e-05	0.0547	GGGGGAAGGCGATGAAAG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	7	24	-	-15.5921	8.22e-05	0.0547	GGGGGAAGGCGATGAAAG
MYF6	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	12	21	-	10.0758	8.22e-05	1	AACAACAGTC
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	70	80	-	11.3061	8.23e-05	0.18	CGCAGGTGCCG
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	70	80	-	11.3061	8.23e-05	0.18	CGCAGGTGCCG
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	70	80	-	11.3061	8.23e-05	0.18	CGCAGGTGCCG
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	70	80	-	11.3061	8.23e-05	0.18	CGCAGGTGCCG
NRL	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	16	26	-	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	26	36	-	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	26	36	-	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	79	89	+	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	89	99	+	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	89	99	+	10.6154	8.23e-05	0.823	TTACTGCTGAT
NRL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	86	96	-	10.6154	8.23e-05	0.823	CAGCTGCTGAC
NRL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	86	96	-	10.6154	8.23e-05	0.823	CAGCTGCTGAC
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	24	40	+	-1.09091	8.23e-05	0.514	GAGGTCACAGTTGCCCC
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	24	40	+	-1.09091	8.23e-05	0.514	GAGGTCACAGTTGCCCC
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	74	90	-	-1.09091	8.23e-05	0.514	GAGGTCACAGTTGCCCC
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	74	90	-	-1.09091	8.23e-05	0.514	GAGGTCACAGTTGCCCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	38	49	+	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	38	49	+	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	69	80	+	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	79	90	+	10.8878	8.23e-05	0.0874	CACCCTCGGGCT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	93	104	+	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	93	104	+	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	93	104	+	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	93	104	+	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	94	105	+	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	10	21	-	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	11	22	-	10.8878	8.23e-05	0.0874	GGCCTGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	35	46	-	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	35	46	-	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	66	77	-	10.8878	8.23e-05	0.0874	CGCCTCTGGGCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	18	33	+	9.89091	8.23e-05	0.0415	TAACCCCCACCCCGCT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	18	33	+	9.89091	8.23e-05	0.0415	TAACCCCCACCCCGCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	52	67	+	9.89091	8.23e-05	0.0415	TCCCGCCCAGGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	52	67	+	9.89091	8.23e-05	0.0415	TCCCGCCCAGGCCGGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	52	67	+	9.89091	8.23e-05	0.0415	TCCCGCCCAGGCCGGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	38	53	-	9.89091	8.23e-05	0.0415	TAACCCCCACCCCGCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	38	53	-	9.89091	8.23e-05	0.0415	TAACCCCCACCCCGCT
E2F4	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	1	11	-	10.3621	8.23e-05	0.0512	CCGCGGGGAAG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	36	46	+	10.3621	8.23e-05	0.0512	GGGCGGCAGAA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	65	75	+	10.3621	8.23e-05	0.0512	GGGCGGCAGAA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	58	68	-	10.3621	8.23e-05	0.0512	CCGCGGGGAAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	58	68	-	10.3621	8.23e-05	0.0512	CCGCGGGGAAG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	69	79	-	10.3621	8.23e-05	0.0512	GGGCGGCAGAA
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	69	79	-	10.3621	8.23e-05	0.0512	GGGCGGCAGAA
Myc	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	78	87	-	11.5455	8.23e-05	0.514	CCACGTGTGC
Myc	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	78	87	-	11.5455	8.23e-05	0.514	CCACGTGTGC
Zfx	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	36	49	-	10.3182	8.23e-05	0.0667	GGGGCTGGAGCCTC
Zfx	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	66	79	+	10.3182	8.23e-05	0.0667	GGGGCTGGAGCCTC
TEF	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	93	104	-	10.1636	8.23e-05	1	CATTACAGAACA
EGR1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	29	42	-	9.84615	8.23e-05	0.029	CCGCCTCCTTCTCC
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	-	11.4098	8.23e-05	0.333	CACACGTGTT
Npas2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	+	11.4098	8.23e-05	0.333	CACACGTGTT
Npas2	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	11.4098	8.23e-05	0.333	AGCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	+	11.4098	8.23e-05	0.333	CACACGTGTT
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	+	11.4098	8.23e-05	0.333	CACACGTGTT
Npas2	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	11.4098	8.23e-05	0.333	AGCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	+	11.4098	8.23e-05	0.333	CACACGTGTT
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	+	11.4098	8.23e-05	0.333	CACACGTGTT
Rxra	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	100	113	-	2.37805	8.23e-05	0.51	AAGTTCCAGGTTCA
ETV4	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	11.2069	8.23e-05	0.127	CCCGGATGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	11.2069	8.23e-05	0.127	CCCGGATGTG
JUN	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	35	47	+	9.77551	8.23e-05	0.332	GCCGTGACGTCAC
JUN	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	68	80	-	9.77551	8.23e-05	0.332	GCCGTGACGTCAC
Esrrg	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	47	56	+	10.6122	8.23e-05	1	CAAAGGTCAC
Esrrg	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	47	56	+	10.6122	8.23e-05	1	CAAAGGTCAC
GLIS1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	17	32	+	-10.4615	8.23e-05	0.329	CGCCCGCCCACGTACC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	29	44	-	-10.4615	8.23e-05	0.329	CGCCCGCCCACGTACC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	69	84	-	-10.4615	8.23e-05	0.329	CTTCCGCCCACTGTGA
GLIS1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	83	98	-	-10.4615	8.23e-05	0.329	CGCCCGCCCACGTACC
SP2	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	41	55	+	9.96552	8.23e-05	0.0172	CTCCCGCTTCCACCG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	65	79	+	9.96552	8.23e-05	0.0172	CGCCCACCCCCAAAC
SP2	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	60	74	-	9.96552	8.23e-05	0.0172	CTCCCGCTTCCACCG
TP73	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	40	57	-	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	86	103	-	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	12	29	+	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	12	29	+	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	12	29	+	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	12	29	+	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
TP73	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	58	75	+	8.01923	8.23e-05	0.667	GCCACGCCCGGCCACGCC
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	18	31	-	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	18	31	-	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	18	31	-	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	18	31	-	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	101	114	+	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	101	114	+	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	101	114	+	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ATF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	101	114	+	6.95714	8.24e-05	0.227	CGGAGACGTCATTG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	20	31	+	10.9032	8.24e-05	0.281	CCGACCCCCCTC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	20	31	+	10.9032	8.24e-05	0.281	CCGACCCCCCTC
ELF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	47	58	+	8.43636	8.24e-05	0.127	ACGGCGGAAGTT
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	47	58	+	8.43636	8.24e-05	0.127	ACGGCGGAAGTT
ELF1	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	59	70	+	8.43636	8.24e-05	0.127	AAGCCGGGAGTG
ELF1	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	83	94	+	8.43636	8.24e-05	0.127	AAGCCGGGAGTG
ELF1	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	21	32	-	8.43636	8.24e-05	0.127	AAGCCGGGAGTG
ELF1	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	68	-	8.43636	8.24e-05	0.127	ACGGCGGAAGTT
ELF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	79	90	-	8.43636	8.24e-05	0.127	AAGCCGGGAGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	79	90	-	8.43636	8.24e-05	0.127	AAGCCGGGAGTG
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	10	21	-	10.8313	8.24e-05	1	AAATGGAAATTT
POU3F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	10	21	-	10.8313	8.24e-05	1	AAATGGAAATTT
ELF3	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	36	48	-	7.72414	8.24e-05	0.182	TACCAGGAAGGTG
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	46	60	+	10.3654	8.24e-05	0.465	AGGTCAGGAGGGACC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	45	59	-	7.7377	8.24e-05	0.0722	TCCCCCGCCCATCCT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	82	92	+	11.0426	8.24e-05	0.275	GATTACTCATG
RFX4	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	46	61	-	9.5	8.24e-05	0.382	CACAGCTTTGGCAACC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	26	39	-	4.65306	8.24e-05	0.377	AGGCTGGAAGCCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	26	39	-	4.65306	8.24e-05	0.377	AGGCTGGAAGCCAG
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	97	106	+	10.2909	8.24e-05	0.655	ACCAGCTGGG
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	97	106	+	10.2909	8.24e-05	0.655	ACCAGCTGGG
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	44	53	-	9.81707	8.24e-05	0.569	AACAGCTTGT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	44	53	-	9.81707	8.24e-05	0.569	AACAGCTTGT
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	59	77	-	10.2742	8.24e-05	0.674	TGGCCCCATGAGACCCAGC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	5	23	+	10.2742	8.24e-05	0.674	TGTCCTGAATTCACCTACT
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	5	23	+	10.2742	8.24e-05	0.674	TGTCCTGAATTCACCTACT
ZBTB18	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	65	77	+	9.21429	8.24e-05	0.763	CAAGCAGCTGTTT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	12	21	+	10.8776	8.24e-05	0.0267	CCTCCACCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	12	21	+	10.8776	8.24e-05	0.0267	CCTCCACCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	37	46	-	10.8776	8.24e-05	0.0267	ACCACTCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	38	47	-	10.8776	8.24e-05	0.0267	CCTCCACCCT
KLF5	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	68	77	+	10.8776	8.24e-05	0.0267	CCTCCACCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	94	103	-	10.8776	8.24e-05	0.0267	CCTCCACCCT
SP8	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	11	22	-	10.5	8.24e-05	0.037	ACCAATCCCACC
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	12	24	+	1.40816	8.24e-05	0.258	CGGGGAGTCGCCT
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	45	57	-	1.40816	8.24e-05	0.258	CGGGGAGTCGCCT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	45	57	-	1.40816	8.24e-05	0.258	CGGGGAGTCGCCT
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	45	57	-	1.40816	8.24e-05	0.258	CGGGGAGTCGCCT
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	45	57	-	1.40816	8.24e-05	0.258	CGGGGAGTCGCCT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	18	31	-	0.0757576	8.24e-05	0.247	AGATTACGTCACCC
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	18	31	-	0.0757576	8.24e-05	0.247	AGATTACGTCACCC
FOXH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	102	112	+	11	8.24e-05	1	TTGAGTCCACA
FOXH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.1.0	102	112	+	11	8.24e-05	1	TTGAGTCCACA
HEY1	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	13	22	+	11.0909	8.24e-05	0.173	GCCACGCGGC
HEY1	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	6	15	-	11.0909	8.24e-05	0.173	GCCACGCGGC
HEY1	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	93	102	-	11.0909	8.24e-05	0.173	GCCACGCGGC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	32	48	+	3.07273	8.25e-05	0.033	CCGGCCCCTCCCCAGAC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	32	48	+	3.07273	8.25e-05	0.033	CCGGCCCCTCCCCAGAC
SP4	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	57	73	+	3.07273	8.25e-05	0.033	TCCGCCCCGCACACCTG
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	78	+	9.94898	8.25e-05	0.351	CACCACGTGCC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	63	77	+	9.12121	8.25e-05	0.355	GGAGTTTTTTTTTTT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	19	33	-	7.58571	8.25e-05	0.122	CCTCCCCTGCTGATT
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	19	33	-	7.58571	8.25e-05	0.122	CCTCCCCTGCTGATT
CTCF	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	90	108	-	8.22951	8.25e-05	0.133	TAGGCTCCAGGAGGCAGAT
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	27	-	9.42623	8.25e-05	0.0644	GCCCCCCGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	25	37	-	9.42623	8.25e-05	0.0644	GGCCCCGTGGGGT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	59	+	9.42623	8.25e-05	0.0644	GCCCCCAGGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	59	+	9.42623	8.25e-05	0.0644	GCCCCCAGGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	59	+	9.42623	8.25e-05	0.0644	GCCCCCAGGGGGG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	56	68	-	9.42623	8.25e-05	0.0644	GCCCCCAGGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	101	113	+	9.42623	8.25e-05	0.0644	AGCCCGCTAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	101	113	+	9.42623	8.25e-05	0.0644	AGCCCGCTAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	101	113	+	9.42623	8.25e-05	0.0644	AGCCCGCTAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	101	113	+	9.42623	8.25e-05	0.0644	AGCCCGCTAGGCG
MAFK	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	10	24	+	10.7111	8.25e-05	1	CATGCTCAGCACCTA
MAFK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	10	24	+	10.7111	8.25e-05	1	CATGCTCAGCACCTA
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	10	24	+	10.7111	8.25e-05	1	CATGCTCAGCACCTA
MAFK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	10	24	+	10.7111	8.25e-05	1	CATGCTCAGCACCTA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	6	16	+	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	6	16	+	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	6	16	+	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	6	16	+	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	6	16	+	10.8462	8.25e-05	0.0758	CGCCGAGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	6	16	+	10.8462	8.25e-05	0.0758	CGCCGAGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	6	16	+	10.8462	8.25e-05	0.0758	CGCCGAGGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	6	16	+	10.8462	8.25e-05	0.0758	CGCCGAGGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	8	18	+	10.8462	8.25e-05	0.0758	GCCCTGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	20	30	-	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	20	30	-	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	21	31	-	10.8462	8.25e-05	0.0758	CGCTCCAGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	34	44	+	10.8462	8.25e-05	0.0758	CGCTCCAGGCT
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	31	41	-	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	55	+	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.0	53	63	+	10.8462	8.25e-05	0.0758	CCCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:160143177..160143291,-__1549.1.2.1	53	63	+	10.8462	8.25e-05	0.0758	CCCCTCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	55	-	10.8462	8.25e-05	0.0758	GCCCTGAGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	60	70	-	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	74	84	+	10.8462	8.25e-05	0.0758	AGCCCCGGGCC
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	84	94	+	10.8462	8.25e-05	0.0758	CGCTCCAGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	101	+	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	101	+	10.8462	8.25e-05	0.0758	CGCCCGGGGCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	2	16	-	9.96364	8.25e-05	0.111	GGCCTCCCGCTCCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	2	16	-	9.96364	8.25e-05	0.111	GGCCTCCCGCTCCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	2	16	-	9.96364	8.25e-05	0.111	GGCCTCCCGCTCCGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	2	16	-	9.96364	8.25e-05	0.111	GGCCTCCCGCTCCGC
EHF	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	14	25	+	9.80328	8.25e-05	0.141	AAACAGGAAATG
EHF	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	26	37	+	9.80328	8.25e-05	0.141	AAAGCGGAAGAA
EHF	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	27	-	9.80328	8.25e-05	0.141	AAACAGGAAATG
EHF	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	78	89	-	9.80328	8.25e-05	0.141	AAAGCGGAAGAA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	16	29	+	-0.0909091	8.25e-05	0.554	TGAGTTAAAGTTTA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	16	29	+	-0.0909091	8.25e-05	0.554	TGAGTTAAAGTTTA
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	38	52	-	6.72368	8.25e-05	0.277	AAGCTGACTCACCTA
Hoxd3	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	66	81	-	10.9481	8.25e-05	1	CCGACGTCATTACCCT
Hes1	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	15	24	+	9.7972	8.25e-05	0.122	CCCACGCGAG
Hes1	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	9.7972	8.25e-05	0.122	ACCACGTGTC
Hes1	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	9.7972	8.25e-05	0.122	ACCACGTGTC
Hes1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	91	100	-	9.7972	8.25e-05	0.122	CCCACGCGAG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	91	100	-	9.7972	8.25e-05	0.122	CCCACGCGAG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	10	20	-	9.50909	8.25e-05	0.0231	CAGCGGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	10	20	-	9.50909	8.25e-05	0.0231	CAGCGGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	10	20	-	9.50909	8.25e-05	0.0231	CAGCGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	10	20	-	9.50909	8.25e-05	0.0231	CAGCGGGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	95	105	+	9.50909	8.25e-05	0.0231	CAGCGGGCGCA
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	53	66	+	3.07576	8.25e-05	0.379	GACCCGCCGCGGCG
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	53	66	+	3.07576	8.25e-05	0.379	GACCCGCCGCGGCG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	53	66	+	3.07576	8.25e-05	0.379	GACCCGCCGCGGCG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	53	66	+	3.07576	8.25e-05	0.379	GACCCGCCGCGGCG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	24	34	+	9.93443	8.25e-05	0.183	AACAGGATGTG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	20	30	-	9.93443	8.25e-05	0.183	AACAGGATGTG
ETV2	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	80	-	9.93443	8.25e-05	0.183	TGCCGGAAACA
ETV2	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	88	98	-	9.93443	8.25e-05	0.183	AACAGGATGTG
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	7	19	-	9.32759	8.25e-05	0.0572	CGCCGCCAAGGCT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	43	55	-	9.32759	8.25e-05	0.0572	CGCCGCCAAGGCT
EGR3	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	18	32	-	5.74138	8.25e-05	0.0418	TACCGCCCCCGACCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	23	37	-	5.74138	8.25e-05	0.0418	TCCCGCCCCCGACTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	23	37	-	5.74138	8.25e-05	0.0418	TCCCGCCCCCGACTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	23	37	-	5.74138	8.25e-05	0.0418	TCCCGCCCCCGACTC
EGR3	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	27	41	-	5.74138	8.25e-05	0.0418	CTCTGCCTCCGCGCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	74	88	+	5.74138	8.25e-05	0.0418	CTCTGCCTCCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	74	88	+	5.74138	8.25e-05	0.0418	CTCTGCCTCCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	76	90	+	5.74138	8.25e-05	0.0418	TCCCGCCTGCGCCTC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	76	90	+	5.74138	8.25e-05	0.0418	TCCCGCCTGCGCCTC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	85	99	+	5.74138	8.25e-05	0.0418	CAACACCCACGTCCA
Barhl1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	65	-	9.45283	8.25e-05	1	TTTAATTGCC
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	33	43	-	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	46	56	+	11.1224	8.25e-05	1	TCCTTATCAGG
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
Gata1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	70	80	+	11.1224	8.25e-05	1	TGCTTATCTTA
HOXC13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.3.0	27	37	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.0.0	27	37	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.3.0	47	57	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.0.0	47	57	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.3.0	75	85	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.0.0	75	85	-	10.2742	8.25e-05	1	GCTTGTAAAGA
HOXC13	FLIPPED__Antisense.flip.antisense__chr5:80597302..80597416,+__2413.1.0.0	58	68	+	10.2742	8.25e-05	1	GCTTGTAAAGA
CREB3L1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	78	91	+	8.04545	8.26e-05	0.349	ACGCCACGACGCTA
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	78	91	+	8.04545	8.26e-05	0.349	ACGCCACGACGCTA
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	7	19	+	10.3934	8.26e-05	0.359	CTGCCTGGCCCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	16	28	+	10.3934	8.26e-05	0.359	GTGGCTGGCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	16	28	+	10.3934	8.26e-05	0.359	GTGGCTGGCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	16	28	+	10.3934	8.26e-05	0.359	GTGGCTGGCACTG
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	16	28	+	10.3934	8.26e-05	0.359	GTGGCTGGCACTG
GATA1::TAL1	WILDTYPE__Enhancer.noflip.NA__chr1:22233363..22233477,-__2032.1.0.0	33	50	+	10.3818	8.26e-05	1	CTTATCTTCAAGAGCCTC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	27	37	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	40	50	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	51	61	+	10.7642	8.26e-05	0.0259	ACCACACCTCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	60	70	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	60	70	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	84	94	+	10.7642	8.26e-05	0.0259	ACCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	99	109	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	99	109	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	99	109	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	99	109	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	99	109	+	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	31	41	-	10.7642	8.26e-05	0.0259	ACCCCGCCCGC
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	54	64	-	10.7642	8.26e-05	0.0259	ACCACACCTCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	54	64	-	10.7642	8.26e-05	0.0259	ACCACACCTCT
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	54	64	-	10.7642	8.26e-05	0.0259	ACCACACCTCT
SP3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	54	64	-	10.7642	8.26e-05	0.0259	ACCACACCTCT
SP3	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	65	75	-	10.7642	8.26e-05	0.0259	CTCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	104	114	-	10.7642	8.26e-05	0.0259	CTCCCACCCCC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	54	66	-	11.2857	8.26e-05	0.193	GGCAGCTGGTTCT
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	54	66	-	11.2857	8.26e-05	0.193	GGCAGCTGGTTCT
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	73	83	-	11.0172	8.26e-05	0.292	TGCTGTGGGCT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	10.9828	8.26e-05	0.125	ACCGGATGCT
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	10.9828	8.26e-05	0.125	ACCGGATGCT
ELK3	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	10.9828	8.26e-05	0.125	AACGGAAGCA
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	10.9828	8.26e-05	0.125	AACGGAAGCA
ELK3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	10.9828	8.26e-05	0.125	AACGGAAGCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	67	78	+	1.79592	8.26e-05	1	GGGCAGGTGACA
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	67	78	+	1.79592	8.26e-05	1	GGGCAGGTGACA
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	67	78	+	1.79592	8.26e-05	1	GGGCAGGTGACA
PKNOX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	67	78	+	1.79592	8.26e-05	1	GGGCAGGTGACA
Vdr	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	32	47	-	3.32787	8.26e-05	0.833	GAGGTCAGTGACGTCA
Vdr	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	32	47	-	3.32787	8.26e-05	0.833	GAGGTCAGTGACGTCA
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	32	47	-	3.32787	8.26e-05	0.833	GAGGTCAGTGACGTCA
Vdr	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	32	47	-	3.32787	8.26e-05	0.833	GAGGTCAGTGACGTCA
ZBTB33	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	78	92	-	9.86364	8.26e-05	0.122	ATCTCGCGAGTGAGC
ZBTB33	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	80	94	-	9.86364	8.26e-05	0.122	CCCTCGCGGTCGCGT
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	23	37	+	9.86364	8.26e-05	0.122	ATCTCGCGAGTGAGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	54	68	+	9.86364	8.26e-05	0.122	GCCCCGCGACACCCT
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	30	40	-	10.6531	8.26e-05	0.238	CAGTGAGTCAA
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	30	40	-	10.6531	8.26e-05	0.238	CAGTGAGTCAA
STAT3	FLIPPED__mrna.flip.antisense__chr12:9268678..9268792,+__2451.1.0.0	28	38	-	10.7143	8.26e-05	0.332	CTTACGGGAAT
STAT3	WILDTYPE__mrna.flip.sense__chr12:9268678..9268792,-__1006.1.0.0	77	87	+	10.7143	8.26e-05	0.332	CTTACGGGAAT
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	36	55	+	3.05505	8.26e-05	0.0718	CCCCTCCCCAGACCACGCCC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	36	55	+	3.05505	8.26e-05	0.0718	CCCCTCCCCAGACCACGCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.0.0	86	105	+	3.05505	8.26e-05	0.0718	ACCATCACCAACAACATCCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:135382964..135383078,+__1637.1.1.0	86	105	+	3.05505	8.26e-05	0.0718	ACCATCACCAACAACATCCA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	28	+	9.85246	8.26e-05	0.0589	AGCCCTTCCGGGA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	29	+	9.85246	8.26e-05	0.0589	GGCCTGCGGGGGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	+	9.85246	8.26e-05	0.0589	CGCCTCCTGGGCG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	99	+	9.85246	8.26e-05	0.0589	TCCCGGAAGGGCT
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	28	-	9.85246	8.26e-05	0.0589	TCCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	62	74	-	9.85246	8.26e-05	0.0589	GGCCTGCGGGGGG
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	99	-	9.85246	8.26e-05	0.0589	AGCCCTTCCGGGA
Sox11	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	1	15	+	-15.1	8.26e-05	1	ACCAAGTTCATTGGT
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	15	29	+	10.5315	8.27e-05	0.188	TGGGAGGAGAGGGGA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	89	103	+	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	11	25	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	11	25	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	11	25	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	36	50	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	36	50	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	36	50	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	36	50	-	10.5315	8.27e-05	0.188	GCCGGGCAGGGGTTA
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	56	66	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	56	66	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	56	66	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	56	66	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	66	76	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	68	78	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	68	78	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	88	98	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	88	98	-	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	17	27	+	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	39	49	+	11.2	8.27e-05	0.721	CGCCTCTCAGC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	39	49	+	11.2	8.27e-05	0.721	CGCCTCTCAGC
EBF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	21	34	-	8.60656	8.27e-05	0.365	AATCCCGCGAGAAC
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	21	34	-	8.60656	8.27e-05	0.365	AATCCCGCGAGAAC
EBF1	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	81	94	+	8.60656	8.27e-05	0.365	AATCCCGCGAGAAC
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	70	83	-	8.60656	8.27e-05	0.365	ACTCGCCGGGGAAC
DUXA	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	78	90	+	10.871	8.27e-05	1	CTAATGTGATCAT
E2F6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	2	12	-	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	2	12	-	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	16	26	-	10.5517	8.27e-05	0.0787	CAGCGGGAAGC
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	22	32	-	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	22	32	-	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	27	37	-	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	27	37	-	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	38	48	-	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	42	52	-	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	58	68	-	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	47	57	+	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	47	57	+	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	61	71	+	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	63	73	+	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
E2F6	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	78	88	+	10.5517	8.27e-05	0.0787	CAGCGGGAGGG
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	95	105	+	10.5517	8.27e-05	0.0787	CCGCGGGAAGA
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	95	105	+	10.5517	8.27e-05	0.0787	CCGCGGGAAGA
E2F6	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	103	113	+	10.5517	8.27e-05	0.0787	GGGCGGCAGGG
NFYA	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	96	113	+	8.65854	8.27e-05	0.222	GAGCCTGTGATTGGACAG
NFYA	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	2	19	-	8.65854	8.27e-05	0.222	GAGCCTGTGATTGGACAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.0.0	98	107	+	11	8.27e-05	0.182	GGATGGGTAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:21766575..21766689,+__1429.1.1.0	98	107	+	11	8.27e-05	0.182	GGATGGGTAG
NFIA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.1.0	36	45	-	12.1556	8.27e-05	1	GCTGCCAACT
NFIA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:47800396..47800510,-__2134.1.0.0	36	45	-	12.1556	8.27e-05	1	GCTGCCAACT
NFIA	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	104	113	+	12.1556	8.27e-05	1	GCTGCCAACT
SNAI2	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	28	36	-	11.0465	8.27e-05	0.533	GTCAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	79	87	+	11.0465	8.27e-05	0.533	GTCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	79	87	+	11.0465	8.27e-05	0.533	GTCAGGTGT
Mlxip	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	5	12	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	13	20	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	13	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	13	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	15	22	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	15	22	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	15	22	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	15	22	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	16	23	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	16	23	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	20	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	22	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	24	31	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	26	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	26	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	19	26	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	19	26	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	20	27	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	20	27	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	20	27	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	20	27	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	20	27	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	32	39	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	35	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	38	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	38	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	43	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	43	50	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	47	54	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	49	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	50	57	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	50	57	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	50	57	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	50	57	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	53	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	53	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	46	53	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	53	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	53	60	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	53	60	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	56	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	56	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	56	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	56	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	56	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	57	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	57	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	58	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	58	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	62	69	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	66	73	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	66	73	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	66	73	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	66	73	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	70	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	70	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	72	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	80	87	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	83	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	96	103	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	102	109	+	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	98	105	-	12.4098	8.27e-05	0.275	TCACGTGG
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	103	110	-	12.4098	8.27e-05	0.275	TCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	17	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	17	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	16	23	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	10	17	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	10	17	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	22	29	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	22	29	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	16	23	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	31	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	31	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	31	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	31	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	22	29	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	22	29	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	37	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	24	31	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	24	31	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	24	31	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	24	31	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	39	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	39	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	39	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	39	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	39	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	30	37	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	32	39	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	32	39	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	32	39	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	32	39	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	32	39	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	85	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	91	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	78	85	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	84	91	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	99	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	104	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	105	+	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	92	99	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	97	104	-	12.1803	8.27e-05	0.318	CCACGTGG
Id2	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	98	105	-	12.1803	8.27e-05	0.318	CCACGTGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	97	107	-	10.4754	8.27e-05	0.0753	GCGGAAGTCTC
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	97	107	-	10.4754	8.27e-05	0.0753	GCGGAAGTCTC
HIC2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	1	9	+	10.7818	8.27e-05	0.424	GTGCCAACT
HIC2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	106	114	-	10.7818	8.27e-05	0.424	GTGCCAACT
Sox3	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	25	34	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	62	71	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	62	71	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	62	71	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	62	71	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	62	71	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	92	101	+	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	6	15	-	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	14	23	-	11.2414	8.27e-05	0.659	CCTTTCTCCT
Sox3	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	81	90	-	11.2414	8.27e-05	0.659	CCTTTCTCCT
JUN(var.2)	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	1	14	-	10.75	8.27e-05	0.228	CCAGCATGACTCAG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	53	66	+	10.75	8.27e-05	0.228	TACTGCTGAGTCAT
JUN(var.2)	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	101	114	+	10.75	8.27e-05	0.228	CCAGCATGACTCAG
Myog	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	37	+	11.2857	8.27e-05	0.18	GCCAGCTGCGG
Myog	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	18	28	-	11.2857	8.27e-05	0.18	GCCAGCTGCGG
Myog	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	78	88	-	11.2857	8.27e-05	0.18	GCCAGCTGCGG
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	78	88	-	11.2857	8.27e-05	0.18	GCCAGCTGCGG
MAX	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	7	16	-	11.7885	8.27e-05	0.298	GGCACGTGCG
MAX	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	30	39	-	11.7885	8.27e-05	0.298	GGCACGTGCG
MAX	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	76	85	+	11.7885	8.27e-05	0.298	GGCACGTGCG
MAX	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	99	108	+	11.7885	8.27e-05	0.298	GGCACGTGCG
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	18	38	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	18	38	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	49	69	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	50	70	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	51	71	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	52	72	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	53	73	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	54	74	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	55	75	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	56	76	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	57	77	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	57	77	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	57	77	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	58	78	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	58	78	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	58	78	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	59	79	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	59	79	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	59	79	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	59	79	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	59	79	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	60	80	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	60	80	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	60	80	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	61	81	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	62	82	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	63	83	+	8.45161	8.27e-05	0.187	TTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	47	67	-	8.45161	8.27e-05	0.187	ACGTGCTTCCTCTTTTCCACC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	47	67	-	8.45161	8.27e-05	0.187	ACGTGCTTCCTCTTTTCCACC
Ascl2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	60	69	-	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	60	69	-	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	36	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	36	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr8:57472021..57472135,-__860.1.0.0	30	39	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	89	98	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	89	98	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	89	98	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	97	106	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	102	111	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	102	111	+	10.5857	8.27e-05	0.244	AGCAGCTGGG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	27	40	+	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	27	40	+	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	27	40	+	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	27	40	+	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	15	28	-	7.63934	8.27e-05	0.186	CCCCCCCCCCGCAG
GLIS2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	23	36	-	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	79	92	+	7.63934	8.27e-05	0.186	CACCCCCCCCGCCC
GLIS2	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	87	100	+	7.63934	8.27e-05	0.186	CCCCCCCCCCGCAG
ID4	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	37	46	-	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	57	66	-	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	91	100	-	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	15	24	+	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	15	24	+	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	15	24	+	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	15	24	+	10.8689	8.27e-05	0.389	GCCACCTGGC
ID4	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	69	78	+	10.8689	8.27e-05	0.389	GCCACCTGGC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	5	15	+	10.3485	8.27e-05	0.0545	AAACCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.0.0	5	15	+	10.3485	8.27e-05	0.0545	AAACCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	36	46	-	10.3485	8.27e-05	0.0545	CAGCACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	36	46	-	10.3485	8.27e-05	0.0545	CAGCACGCCCA
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:73256811..73256925,-__1330.1.2.1	1	10	-	9.04082	8.27e-05	0.257	TTGGCTTTCC
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	57	68	+	8.59016	8.27e-05	0.117	AAACAGGAAGGA
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	57	68	+	8.59016	8.27e-05	0.117	AAACAGGAAGGA
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	27	38	-	8.59016	8.27e-05	0.117	AAACAGGAAGGA
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	27	38	-	8.59016	8.27e-05	0.117	AAACAGGAAGGA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	23	32	+	10.9615	8.27e-05	0.119	ACCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	23	32	+	10.9615	8.27e-05	0.119	ACCGGAAGGG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	68	77	+	10.9615	8.27e-05	0.119	ACCGGAAGCT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	68	77	+	10.9615	8.27e-05	0.119	ACCGGAAGCT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	68	77	+	10.9615	8.27e-05	0.119	ACCGGAAGCT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	68	77	+	10.9615	8.27e-05	0.119	ACCGGAAGCT
ETV6	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	16	25	-	10.9615	8.27e-05	0.119	ACCGGAAGCT
ETV6	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	63	-	10.9615	8.27e-05	0.119	ACCGGAAGCT
Gmeb1	FLIPPED__mrna.flip.antisense__chr2:63277906..63278020,-__2752.1.0.0	94	110	+	10.5921	8.27e-05	0.668	GCGAGTGCGTAACGGGG
Gmeb1	WILDTYPE__mrna.flip.sense__chr2:63277906..63278020,+__1061.1.0.0	5	21	-	10.5921	8.27e-05	0.668	GCGAGTGCGTAACGGGG
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	21	32	+	10.4868	8.27e-05	0.0371	CCCAACCCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	21	32	+	10.4868	8.27e-05	0.0371	CCCAACCCCCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	21	32	+	10.4868	8.27e-05	0.0371	CCCAACCCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	21	32	+	10.4868	8.27e-05	0.0371	CCCAACCCCCCT
XBP1	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	10	23	-	9.32692	8.27e-05	0.529	CTTTAAACGTCATC
XBP1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	24	37	+	9.32692	8.27e-05	0.529	CCGGACACGTCTGC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	44	57	+	9.32692	8.27e-05	0.529	CTTTAAACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	44	57	+	9.32692	8.27e-05	0.529	CTTTAAACGTCATC
XBP1	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	58	71	-	9.32692	8.27e-05	0.529	CTTTAAACGTCATC
XBP1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	78	91	-	9.32692	8.27e-05	0.529	CCGGACACGTCTGC
XBP1	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	92	105	+	9.32692	8.27e-05	0.529	CTTTAAACGTCATC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	24	41	-	-15.6184	8.27e-05	0.0547	GGAGGGAGAGCGGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	24	41	-	-15.6184	8.27e-05	0.0547	GGAGGGAGAGCGGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	24	41	-	-15.6184	8.27e-05	0.0547	GGAGGGAGAGCGGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	24	41	-	-15.6184	8.27e-05	0.0547	GGAGGGAGAGCGGGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	39	56	-	-15.6184	8.27e-05	0.0547	GAAAGGAGGGGATGGGGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	39	56	-	-15.6184	8.27e-05	0.0547	GAAAGGAGGGGATGGGGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	67	84	-	-15.6184	8.27e-05	0.0547	GAAAGGAGGGGATGGGGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	67	84	-	-15.6184	8.27e-05	0.0547	GAAAGGAGGGGATGGGGT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	74	91	-	-15.6184	8.27e-05	0.0547	AGAAGGGAAGAGGGCAGC
MAF::NFE2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	20	34	-	8.11475	8.28e-05	0.497	ATGAGACTGCAGGCA
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	81	95	+	8.11475	8.28e-05	0.497	ATGAGACTGCAGGCA
REST	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	12	32	-	4.56122	8.28e-05	0.235	GCTCCCACCTCGGCCCGCGCC
REST	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	49	69	-	4.56122	8.28e-05	0.235	GCTCCCACCTCGGCCCGCGCC
REST	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	91	111	-	4.56122	8.28e-05	0.235	AGCCGCACCCCGCCGAGCTCT
REST	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	4	24	+	4.56122	8.28e-05	0.235	AGCCGCACCCCGCCGAGCTCT
REST	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	46	66	+	4.56122	8.28e-05	0.235	GCTCCCACCTCGGCCCGCGCC
REST	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	83	103	+	4.56122	8.28e-05	0.235	GCTCCCACCTCGGCCCGCGCC
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	15	28	-	4.64286	8.28e-05	0.377	TTGCCGCGGGCCAG
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	33	46	+	4.64286	8.28e-05	0.377	GGGCTCAGTGCCAG
FIGLA	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	29	38	+	11.3966	8.28e-05	0.859	AACAGCTGTG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	98	107	+	11.3966	8.28e-05	0.859	AACAGCTGTG
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	98	107	+	11.3966	8.28e-05	0.859	AACAGCTGTG
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	30	39	+	10.898	8.28e-05	0.159	CGCACGTGGC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	26	35	-	10.898	8.28e-05	0.159	CGCACGTGGC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	25	40	-	-3.12245	8.28e-05	0.877	CAGCCTAAAAGGTCAC
Rarg	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	68	83	+	-3.12245	8.28e-05	0.877	CAGCCTAAAAGGTCAC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	27	40	+	6.94286	8.28e-05	0.228	AAGTGACATCACAA
TFEB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	40	49	+	10.9808	8.28e-05	0.192	CACACGTGCC
TFEB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	40	49	+	10.9808	8.28e-05	0.192	CACACGTGCC
RXRA::VDR	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	68	82	-	5.3211	8.28e-05	1	GGGACATGGGGTGCG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	24	33	+	11.0909	8.28e-05	0.143	ACAGGAAGCC
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	24	33	+	11.0909	8.28e-05	0.143	ACAGGAAGCC
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	+	10.4228	8.28e-05	0.956	TATTTCCGTT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	+	10.4228	8.28e-05	0.956	TATTTCCGTT
NFATC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	-	10.4228	8.28e-05	0.956	TATTTCCGTT
NFATC1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	-	10.4228	8.28e-05	0.956	TATTTCCGTT
Gata4	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	48	58	-	11.2241	8.28e-05	1	CCTTATCTTGT
MEIS2	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	43	50	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	50	57	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	61	68	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	61	68	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	61	68	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	74	81	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	74	81	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	84	91	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	102	109	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	102	109	-	11.6885	8.28e-05	0.972	GTGACAGG
MEIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	22	29	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	22	29	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	31	38	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.0	31	38	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	31	38	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	31	38	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.3.1	31	38	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.2.0	47	54	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630286..207630400,+__1558.1.0.0	47	54	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	57	64	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	83	90	-	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	1	8	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	15	22	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	15	22	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	15	22	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	15	22	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	43	50	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	60	67	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	102	109	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	102	109	+	11.1923	8.28e-05	0.89	ATGACAGC
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	32	39	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	33	40	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	33	40	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	38	45	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	58	65	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.1	58	65	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	60	67	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	64	71	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	64	71	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	64	71	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	64	71	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	64	71	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	100	107	+	11.6885	8.28e-05	0.972	GTGACAGG
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	100	107	+	11.6885	8.28e-05	0.972	GTGACAGG
INSM1	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	10	21	-	9.26531	8.28e-05	0.195	TGTCAGGGTGCA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr6:10403975..10404089,-__2102.1.0.0	88	98	-	5.04082	8.28e-05	0.378	AATGAATCACT
NFE2	WILDTYPE__Enhancer.noflip.NA__chr6:10403971..10404085,+__1809.1.0.0	21	31	+	5.04082	8.28e-05	0.378	AATGAATCACT
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	37	55	+	10.1613	8.28e-05	0.153	TGGGTTACCGGACCAAGGC
PAX5	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	25	43	-	10.1613	8.28e-05	0.153	CAGCGCGGCGGCGCGCGGC
PAX5	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	82	100	-	10.1613	8.28e-05	0.153	GAGGGCGCTGGAGTGAGGA
Klf12	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	28	42	-	7.72131	8.28e-05	0.0725	CGCCCCGCCCCAAGC
Klf12	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	56	70	+	7.72131	8.28e-05	0.0725	AACCCCACCCAGCCA
ELF3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	25	37	+	7.7069	8.28e-05	0.182	CAACAGGAAGTCG
ELF3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	78	90	-	7.7069	8.28e-05	0.182	CAACAGGAAGTCG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	66	82	+	-6.17978	8.29e-05	1	CGGGGTGAAGGGTCATA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	16	35	-	3.04587	8.29e-05	0.0718	CCCCACCCCTCCAGGCCCAC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	16	35	-	3.04587	8.29e-05	0.0718	CCCCACCCCTCCAGGCCCAC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	16	35	-	3.04587	8.29e-05	0.0718	CCCCACCCCTCCAGGCCCAC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	16	35	-	3.04587	8.29e-05	0.0718	CCCCACCCCTCCAGGCCCAC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	68	87	+	3.04587	8.29e-05	0.0718	AACCCCAGCGCCCCACCACC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	68	87	+	3.04587	8.29e-05	0.0718	AACCCCAGCGCCCCACCACC
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	10	24	+	6.71053	8.29e-05	0.277	GAGCCTAGTCAGCAG
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	57	71	-	6.71053	8.29e-05	0.277	GGCGAGAGTCCGCAT
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	41	51	+	10.8276	8.29e-05	0.597	CAATCAAAGCC
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	46	56	+	10.8276	8.29e-05	0.597	CAATCAAAGCC
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	59	69	-	10.8276	8.29e-05	0.597	CAATCAAAGCC
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	64	74	-	10.8276	8.29e-05	0.597	CAATCAAAGCC
SP4	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	2	18	-	3.05455	8.29e-05	0.033	AGGGCTCCGCCCCGCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	23	39	+	3.05455	8.29e-05	0.033	CTCGACCCACCCACCCG
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	12	28	-	3.05455	8.29e-05	0.033	CGCCCCCCGCCCCCCAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	22	38	-	3.05455	8.29e-05	0.033	GCGATCCCGCCCCCGCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	22	38	-	3.05455	8.29e-05	0.033	GCGATCCCGCCCCCGCC
SP4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	29	45	-	3.05455	8.29e-05	0.033	CAGACTCCTCCCCCGAG
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	51	67	+	3.05455	8.29e-05	0.033	AAATCCCCTCCCCCAGG
SP4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	51	67	+	3.05455	8.29e-05	0.033	AAATCCCCTCCCCCAGG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	51	67	+	3.05455	8.29e-05	0.033	AAATCCCCTCCCCCAGG
SP4	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	63	79	+	3.05455	8.29e-05	0.033	CGCCCCCCGCCCCCCAC
SP4	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	48	64	-	3.05455	8.29e-05	0.033	AAATCCCCTCCCCCAGG
SP4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	70	86	+	3.05455	8.29e-05	0.033	CAGACTCCTCCCCCGAG
CEBPE	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	-	11.3091	8.29e-05	0.729	ATTGCGCCAT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	+	11.3091	8.29e-05	0.729	ATTGCGCCAT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	+	11.3091	8.29e-05	0.729	ATTGCGCCAT
CEBPE	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	+	11.3091	8.29e-05	0.729	ATTGCGCCAT
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	5	25	-	9.22449	8.29e-05	0.0219	AGGGGGAGGGGAGTAGGAGGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	6	26	-	9.22449	8.29e-05	0.0219	GGAGAGGGGCAGGGGTGAAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	17	37	-	9.22449	8.29e-05	0.0219	AGGGGGAGGAGAGGGGAGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	24	44	-	9.22449	8.29e-05	0.0219	GGTTCATGGGGGCGGAGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	28	48	-	9.22449	8.29e-05	0.0219	GGAGTGGGGAGAGCAGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	57	77	-	9.22449	8.29e-05	0.0219	GGAGAGGGGCAGGGGTGAAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	66	86	-	9.22449	8.29e-05	0.0219	GAAAGCTGGGGCGGGGAAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	17	37	+	9.22449	8.29e-05	0.0219	CGTGCAGCCGGGAGGAGGGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	25	45	+	9.22449	8.29e-05	0.0219	GGGGGTTGAACAAAGTGGAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	29	49	+	9.22449	8.29e-05	0.0219	GAAAGCTGGGGCGGGGAAGGG
ZNF263	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	38	58	+	9.22449	8.29e-05	0.0219	GGAGAGGGGCAGGGGTGAAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	61	81	+	9.22449	8.29e-05	0.0219	GGGGGTGGGCGAAGAGAGCGC
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	85	105	+	9.22449	8.29e-05	0.0219	GGAGGCAGAGAAGGGGTTGGT
ZNF263	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	89	109	+	9.22449	8.29e-05	0.0219	GGAGAGGGGCAGGGGTGAAGG
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	9	25	+	2.52459	8.29e-05	0.563	GGGCCGCGGAGGGGTCG
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	9	25	+	2.52459	8.29e-05	0.563	GGGCCGCGGAGGGGTCG
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	9	25	+	2.52459	8.29e-05	0.563	GGGCCGCGGAGGGGTCG
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	9	25	+	2.52459	8.29e-05	0.563	GGGCCGCGGAGGGGTCG
POU4F3	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	77	92	-	10.4173	8.29e-05	1	CAGCATTATAAATGGC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	25	+	10.8776	8.29e-05	0.0876	TGCCCGAGGCCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	55	66	+	10.8776	8.29e-05	0.0876	TGCCCTGGGCCC
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	100	113	+	3.06061	8.29e-05	0.379	GAGCTCCCGGGACG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	100	113	+	3.06061	8.29e-05	0.379	GAGCTCCCGGGACG
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	73	83	-	11.2414	8.29e-05	0.902	TGATGTTTACT
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	73	83	-	11.2414	8.29e-05	0.902	TGATGTTTACT
EGR2	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	14	24	-	9.05172	8.29e-05	0.0862	CCTCCCACGGA
EGR2	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	91	101	+	9.05172	8.29e-05	0.0862	CCTCCCACGGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	9	18	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	9	18	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	6	15	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	16	25	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	10	19	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	10	19	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	12	21	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	12	21	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	12	21	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	12	21	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	15	24	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	29	38	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	30	39	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	30	39	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	30	39	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	30	39	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	21	30	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	32	41	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	25	34	-	10.3163	8.29e-05	0.0277	AGGGTGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	25	34	-	10.3163	8.29e-05	0.0277	AGGGTGAGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	29	38	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	29	38	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	30	39	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	30	39	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	30	39	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	31	40	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	41	50	+	10.3163	8.29e-05	0.0277	TAGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	41	50	+	10.3163	8.29e-05	0.0277	TAGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	41	50	+	10.3163	8.29e-05	0.0277	TAGGTGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	41	50	+	10.3163	8.29e-05	0.0277	TAGGTGTGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	32	41	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	42	51	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	43	52	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	46	55	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	46	55	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	46	55	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	38	47	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	38	47	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	42	51	-	10.3163	8.29e-05	0.0277	AGGGTGAGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	54	63	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	49	58	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	49	58	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	72	81	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	72	81	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	72	81	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	72	81	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	64	73	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	75	84	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	76	85	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	76	85	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	79	88	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	79	88	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr8:103424999..103425113,-__1111.1.0.0	73	82	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	74	83	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	85	94	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	84	93	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	85	94	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	90	99	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	100	109	+	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Klf4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	97	106	-	10.3163	8.29e-05	0.0277	GAGGCGGGGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	30	43	+	9.67241	8.29e-05	0.316	CTCTGCCTGGAAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	56	69	+	9.67241	8.29e-05	0.316	CTCTGCCTGGAAAC
TAL1::TCF3	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	96	107	+	10.5056	8.29e-05	1	CCTACATATGGT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.1.0	47	64	-	4.40367	8.29e-05	0.632	GGAAAGTTATAGGAAATA
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:69726870..69726984,+__1945.1.0.0	47	64	-	4.40367	8.29e-05	0.632	GGAAAGTTATAGGAAATA
LIN54	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	49	57	-	11.3492	8.29e-05	1	ATTTAAATA
LIN54	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	49	57	-	11.3492	8.29e-05	1	ATTTAAATA
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	18	32	-	7.57143	8.29e-05	0.122	TCCACCCCAGTGTGC
IRF8	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	60	73	-	-3.49091	8.29e-05	0.788	GCAAAAGCGGAACC
Stat4	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	66	79	-	10.8793	8.29e-05	0.361	GTTAAAGGAAGAGG
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	25	38	-	4.63265	8.29e-05	0.377	TGGGTGTTGGCCAA
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	57	72	-	10.1585	8.29e-05	1	GGTCATGCTAATATTA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	99	109	-	10.6	8.29e-05	0.0718	ACCCTCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	99	109	-	10.6	8.29e-05	0.0718	ACCCTCAGGGA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	99	109	-	10.6	8.29e-05	0.0718	ACCCTCAGGGA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	99	109	-	10.6	8.29e-05	0.0718	ACCCTCAGGGA
TFAP2B	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	5	16	+	10.9091	8.3e-05	0.0924	CGCCCGGAGCCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	15	26	+	10.9091	8.3e-05	0.0924	CGCCTGGAGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	23	34	+	10.9091	8.3e-05	0.0924	CGCCTGGAGGGA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	23	34	+	10.9091	8.3e-05	0.0924	CGCCTGGAGGGA
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	36	47	+	10.9091	8.3e-05	0.0924	CGCCCCTGGGCC
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	36	47	+	10.9091	8.3e-05	0.0924	CGCCCCTGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	36	47	+	10.9091	8.3e-05	0.0924	CGCCCCTGGGCC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	41	52	+	10.9091	8.3e-05	0.0924	CCCCCGCGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	45	56	+	10.9091	8.3e-05	0.0924	CACCTCAGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	59	70	+	10.9091	8.3e-05	0.0924	TCCCCGAGGCCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	59	70	+	10.9091	8.3e-05	0.0924	TCCCCGAGGCCG
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	71	82	+	10.9091	8.3e-05	0.0924	CCCCCGCGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	82	93	+	10.9091	8.3e-05	0.0924	AGCCTCAGGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	112	+	10.9091	8.3e-05	0.0924	CGCCTCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	112	+	10.9091	8.3e-05	0.0924	CGCCTCCGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	7	18	-	10.9091	8.3e-05	0.0924	CACCTCAGGGCT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	25	36	-	10.9091	8.3e-05	0.0924	CCCCCGCGGGCC
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	33	44	-	10.9091	8.3e-05	0.0924	CCCCCGCGGGCC
TFAP2B	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	73	84	-	10.9091	8.3e-05	0.0924	CGCCCGGAGCCG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	89	100	-	10.9091	8.3e-05	0.0924	CGCCTGGAGGGA
ZNF143	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	80	95	-	0.586207	8.3e-05	0.451	CACCCGCAGTGCAAGT
SP2	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	20	34	-	9.94828	8.3e-05	0.0173	CCCCTTCCTCTCCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	24	38	-	9.94828	8.3e-05	0.0173	CCTCCGCCCACATTC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	24	38	-	9.94828	8.3e-05	0.0173	CCTCCGCCCACATTC
SP2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	86	100	-	9.94828	8.3e-05	0.0173	CTCCCACCTCGGCCT
SP2	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	86	100	-	9.94828	8.3e-05	0.0173	CTCCCACCTCGGCCT
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	48	62	+	8.88571	8.3e-05	0.122	GGGGGGAAGGGTTCG
OTX1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	5	12	-	11.234	8.3e-05	1	CTAATCCC
OTX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	52	59	-	11.234	8.3e-05	1	CTAATCCC
OTX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	52	59	-	11.234	8.3e-05	1	CTAATCCC
OTX1	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	81	88	-	11.234	8.3e-05	1	CTAATCCC
OTX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	100	107	-	11.234	8.3e-05	1	CTAATCCC
OTX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	100	107	-	11.234	8.3e-05	1	CTAATCCC
Sox17	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	31	39	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	31	39	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	31	39	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	64	72	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.1.0	106	114	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.0.0	106	114	+	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	38	46	-	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	38	46	-	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	57	65	-	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	78	86	-	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	79	87	-	11.4157	8.3e-05	1	GTCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	79	87	-	11.4157	8.3e-05	1	GTCATTGTG
Alx4	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	56	72	-	10.7013	8.3e-05	1	CGTCATAATTAATTGCG
Alx4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	43	59	+	10.7013	8.3e-05	1	CGTCATAATTAATTGCG
Alx4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	43	59	+	10.7013	8.3e-05	1	CGTCATAATTAATTGCG
FOSL2	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	24	34	+	10.0909	8.3e-05	0.25	GAATGGGTCAT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	37	51	+	5.72414	8.3e-05	0.0418	CGCCGCCCGCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	37	51	+	5.72414	8.3e-05	0.0418	CGCCGCCCGCCCGCC
EGR3	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	64	78	-	5.72414	8.3e-05	0.0418	CGCCGCCCGCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	90	104	-	5.72414	8.3e-05	0.0418	TACCGCCGTCGCACT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	92	109	-	-15.6316	8.3e-05	0.0547	GGAAGGAAGAAAAGCCAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	92	109	-	-15.6316	8.3e-05	0.0547	GGAAGGAAGAAAAGCCAT
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.1.0	14	27	+	8.0303	8.3e-05	0.349	GAGCTACGTCATAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769805..185769919,-__2197.1.0.0	14	27	+	8.0303	8.3e-05	0.349	GAGCTACGTCATAA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.0.0	85	98	-	8.0303	8.3e-05	0.349	GAGCTACGTCATAA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:185769808..185769922,+__1904.1.1.0	85	98	-	8.0303	8.3e-05	0.349	GAGCTACGTCATAA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	15	28	+	4.95918	8.3e-05	0.0748	CGGGCGAAGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	15	28	+	4.95918	8.3e-05	0.0748	CGGGCGAAGGGGTG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	15	28	+	4.95918	8.3e-05	0.0748	CGGGCGAAGGGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	15	28	+	4.95918	8.3e-05	0.0748	CGGGCGAAGGGGTG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	22	35	+	4.95918	8.3e-05	0.0748	GGGTGATAATGGGG
CDX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	3	11	+	11.0377	8.3e-05	1	CCCATAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	3	11	+	11.0377	8.3e-05	1	CCCATAAAA
NFATC3	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	3	12	+	10.8687	8.3e-05	1	ACTTTCCGCT
NFATC3	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	1	10	-	10.8687	8.3e-05	1	ACTTTCCGCT
NFATC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	68	77	+	10.8687	8.3e-05	1	AATTTCCATC
NFATC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	68	77	+	10.8687	8.3e-05	1	AATTTCCATC
NFATC3	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	105	114	+	10.8687	8.3e-05	1	ACTTTCCGCT
NFATC3	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	103	112	-	10.8687	8.3e-05	1	ACTTTCCGCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	17	27	+	10.1207	8.3e-05	0.0255	AGCACCCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	24	34	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	24	34	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	24	34	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	24	34	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	28	38	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	35	45	-	10.1207	8.3e-05	0.0255	GCCACCCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	45	55	-	10.1207	8.3e-05	0.0255	GCCCACCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	49	59	-	10.1207	8.3e-05	0.0255	TCCACGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	49	59	-	10.1207	8.3e-05	0.0255	TCCACGCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	49	59	-	10.1207	8.3e-05	0.0255	TCCACGCCCCG
KLF16	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	53	63	-	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	70	80	+	10.1207	8.3e-05	0.0255	GCCACCCCCCA
KLF16	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	77	87	+	10.1207	8.3e-05	0.0255	CCCACCCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.0.0	83	93	-	10.1207	8.3e-05	0.0255	GCCACCCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:105147390..105147504,+__278.1.1.0	83	93	-	10.1207	8.3e-05	0.0255	GCCACCCCCCA
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	98	108	-	10.1207	8.3e-05	0.0255	TCCACGCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	98	108	-	10.1207	8.3e-05	0.0255	TCCACGCCCCG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	12	25	+	9.82692	8.3e-05	0.0291	GCAACTCCTCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	9	22	-	9.82692	8.3e-05	0.0291	CTCCCTCCCTCTGC
EGR1	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	23	36	+	9.82692	8.3e-05	0.0291	TCTCCGCCCTCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	28	41	-	9.82692	8.3e-05	0.0291	CGCCCGCCGCCAGT
EGR1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	32	45	-	9.82692	8.3e-05	0.0291	ACCCCGCTCACGTC
EGR1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	65	78	+	9.82692	8.3e-05	0.0291	CCGCCGCTTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	70	83	+	9.82692	8.3e-05	0.0291	ACCCCGCTCACGTC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	70	83	+	9.82692	8.3e-05	0.0291	ACCCCGCTCACGTC
EGR1	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	79	92	-	9.82692	8.3e-05	0.0291	TCTCCGCCCTCAGC
Hes2	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	1	13	+	10.5079	8.3e-05	0.577	GAGAGAAACGTGT
Hes2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	24	36	-	10.5079	8.3e-05	0.577	CAAAGGCGCGTGC
Hes2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	24	36	-	10.5079	8.3e-05	0.577	CAAAGGCGCGTGC
CTCF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	14	32	-	8.21311	8.3e-05	0.133	CGGCCGCCGGAGTGAGCCA
STAT1::STAT2	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	22	36	+	9.10606	8.3e-05	0.355	GAGTTTTCGGTTTCC
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	79	93	-	9.10606	8.3e-05	0.355	GAGTTTTCGGTTTCC
SPIC	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	101	114	+	10.5211	8.31e-05	0.292	TGAAAGCCGAAGTT
SPIC	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	1	14	-	10.5211	8.31e-05	0.292	TGAAAGCCGAAGTT
Znf423	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	39	53	-	5.08989	8.31e-05	0.372	CGCCCCTTTGGCGCC
Znf423	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	39	53	-	5.08989	8.31e-05	0.372	CGCCCCTTTGGCGCC
TFEC	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	3	12	+	11.2073	8.31e-05	0.199	ATCACATGGT
TFEC	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	9	18	+	11.2073	8.31e-05	0.199	ATCACATGCT
TFEC	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	41	50	+	11.2073	8.31e-05	0.199	GTCAGGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	43	52	-	11.2073	8.31e-05	0.199	ATCACATGCT
TFEC	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	103	112	-	11.2073	8.31e-05	0.199	ATCACATGGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	27	-	9.87273	8.31e-05	0.0416	CCACCCCCCCGCGGCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	23	38	-	9.87273	8.31e-05	0.0416	CTCCGCCCCCACCGAT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	41	56	+	9.87273	8.31e-05	0.0416	GTCCGCCCACCTCCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	41	56	+	9.87273	8.31e-05	0.0416	GTCCGCCCACCTCCCG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	52	67	+	9.87273	8.31e-05	0.0416	GCCCGCCCCTCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	52	67	+	9.87273	8.31e-05	0.0416	GCCCGCCCCTCCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	45	60	-	9.87273	8.31e-05	0.0416	CTCCGCCCCCACCGAT
NR1H2::RXRA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	91	107	-	-6.19101	8.31e-05	1	CGGGGGCCATGGTCAGC
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	91	107	-	-6.19101	8.31e-05	1	CGGGGGCCATGGTCAGC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	29	39	-	10.0182	8.31e-05	0.248	CATGACTCACG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	39	49	+	10.0182	8.31e-05	0.248	CATGACTCACG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	29	39	-	10.0182	8.31e-05	0.248	CATGACTCACG
MEF2C	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	43	57	+	10.5763	8.31e-05	1	ATAGTATAAATAGAA
EVX2	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	4	13	+	10.16	8.31e-05	1	AGTGATTAGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.0.0	39	50	+	10.9455	8.31e-05	0.0579	CGCCCCCAGCGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	39	50	+	10.9455	8.31e-05	0.0579	CGCCCCCAGCGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	40	51	-	10.9455	8.31e-05	0.0579	CACCCTGAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	40	51	-	10.9455	8.31e-05	0.0579	CACCCTGAGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	52	63	-	10.9455	8.31e-05	0.0579	TGCCCCCTGGCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	80	91	-	10.9455	8.31e-05	0.0579	CGCCTCCCGGCC
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	10	27	+	3.91379	8.31e-05	0.338	AGGTCACACCCACACGAG
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	44	61	-	3.91379	8.31e-05	0.338	AGGTCACACCCACACGAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	28	41	+	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	28	41	+	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	29	42	-	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	29	42	-	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
KLF14	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	73	86	+	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
KLF14	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	74	87	-	8.24138	8.31e-05	0.0396	GGACACGCCTTCCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	20	29	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	20	29	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	+	9.8871	8.31e-05	0.0516	GTCACGTGCG
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	9.8871	8.31e-05	0.0516	CGCACGTGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	55	64	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	55	64	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	55	64	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	55	64	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	55	64	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	55	64	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	55	64	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	55	64	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	55	64	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	55	64	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	9.8871	8.31e-05	0.0516	CGCACGTGAC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	-	9.8871	8.31e-05	0.0516	GTCACGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	82	91	+	9.8871	8.31e-05	0.0516	TGCGCGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	82	91	-	9.8871	8.31e-05	0.0516	TGCGCGCGCA
POU6F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	72	81	+	11.1091	8.31e-05	1	AGTTCATTAT
POU6F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	72	81	+	11.1091	8.31e-05	1	AGTTCATTAT
TFAP2A	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	1	11	+	11	8.31e-05	0.0554	AGCCTCCGGGT
TFAP2A	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	67	77	+	11	8.31e-05	0.0554	GGCCTCGGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	69	79	-	11	8.31e-05	0.0554	AGCCTCCGGGT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	104	114	-	11	8.31e-05	0.0554	AGCCTCCGGGT
ESX1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	10.1111	8.31e-05	1	ATTAATTAAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	67	77	-	10.1034	8.31e-05	0.0255	GCCACCCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	67	77	-	10.1034	8.31e-05	0.0255	GCCACCCCCGC
Nr1h3::Rxra	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	19	37	-	10.2581	8.31e-05	0.674	TGCCCCTCTCTGACCCCAC
Nr1h3::Rxra	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	78	96	+	10.2581	8.31e-05	0.674	TGCCCCTCTCTGACCCCAC
STAT3	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	1	11	+	10.6939	8.31e-05	0.332	CATCTTGGAAA
STAT3	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	102	112	-	10.6939	8.31e-05	0.332	CATCTTGGAAA
PROX1	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	2	13	+	8.21818	8.31e-05	1	GATGACGCCTGC
PROX1	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	102	113	-	8.21818	8.31e-05	1	GATGACGCCTGC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr9:132044709..132044823,+__894.1.0.0	4	13	-	10.8571	8.31e-05	0.0269	TCTCCACCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr21:17566581..17566695,+__494.1.0.0	23	32	+	10.8571	8.31e-05	0.0269	TCTCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	75	84	-	10.8571	8.31e-05	0.0269	TCTCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	75	84	-	10.8571	8.31e-05	0.0269	TCTCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	75	84	-	10.8571	8.31e-05	0.0269	TCTCCACCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	75	84	-	10.8571	8.31e-05	0.0269	TCTCCACCCA
Sox6	WILDTYPE__Enhancer.flip.sense__chr2:85147094..85147208,-__2079.1.0.0	48	57	+	11.1429	8.31e-05	0.878	CCTTTGTCCA
Sox6	FLIPPED__Enhancer.flip.antisense__chr2:85147134..85147248,-__2833.1.0.0	88	97	+	11.1429	8.31e-05	0.878	CCTTTGTCCA
Sox6	WILDTYPE__Enhancer.flip.sense__chr2:85147134..85147248,+__1786.1.0.0	18	27	-	11.1429	8.31e-05	0.878	CCTTTGTCCA
Sox6	FLIPPED__Enhancer.flip.antisense__chr2:85147094..85147208,+__2549.1.0.0	58	67	-	11.1429	8.31e-05	0.878	CCTTTGTCCA
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	+	7.55769	8.31e-05	0.216	GTCACGCGAG
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	22	31	-	7.55769	8.31e-05	0.216	GTCACGGGAG
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	48	57	-	7.55769	8.31e-05	0.216	GTCACGGGAG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	21	35	+	10.0213	8.31e-05	0.365	GCTAGTGATGCAATG
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	21	35	+	10.0213	8.31e-05	0.365	GCTAGTGATGCAATG
Ar	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	34	50	-	5.98276	8.32e-05	0.882	AGGAAGATTTCGTTCTC
Ar	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	65	81	+	5.98276	8.32e-05	0.882	AGGAAGATTTCGTTCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	12	22	-	10.4231	8.32e-05	0.0196	ACTCCACCTCC
SP1	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	18	28	-	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	45	55	+	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SP1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	45	55	+	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	45	55	+	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	40	50	-	10.4231	8.32e-05	0.0196	ACTCCACCTCC
SP1	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	60	70	-	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SP1	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	87	97	+	10.4231	8.32e-05	0.0196	CCTCCACCTCT
SREBF1	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	49	58	+	10.8902	8.32e-05	0.472	CTCACACGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	100	109	+	10.8902	8.32e-05	0.472	CTCACACGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	100	109	+	10.8902	8.32e-05	0.472	CTCACACGAC
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	12	25	+	5.70213	8.32e-05	0.105	CCCCCCCCAGTGTT
ZIC1	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	21	34	-	5.70213	8.32e-05	0.105	TCCTACCCGCCGCG
GATA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	11	18	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	11	18	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	30	37	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	43	50	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	43	50	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	43	50	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	57	64	-	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	66	73	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	89	96	-	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.0.0	99	106	+	10.4483	8.32e-05	1	AGATAACA
GATA5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122073676..122073790,-__160.1.1.0	99	106	+	10.4483	8.32e-05	1	AGATAACA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	31	+	9.83607	8.32e-05	0.0589	GGCCTGGAGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	31	+	9.83607	8.32e-05	0.0589	GGCCTGGAGGGGT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	31	+	9.83607	8.32e-05	0.0589	GGCCTGGAGGGGT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	31	+	9.83607	8.32e-05	0.0589	GGCCTGGAGGGGT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	11	23	-	9.83607	8.32e-05	0.0589	GGCCGCGCGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	11	23	-	9.83607	8.32e-05	0.0589	GGCCGCGCGGGGG
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	17	+	11.2449	8.32e-05	0.198	AGCAGCTGTCT
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	18	28	+	10.9455	8.32e-05	0.77	AGGGGAGGAGC
Spz1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	18	28	+	10.9455	8.32e-05	0.77	AGGGGAGGAGC
Spz1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	18	28	+	10.9455	8.32e-05	0.77	AGGGGAGGAGC
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	18	28	+	10.9455	8.32e-05	0.77	AGGGGAGGAGC
Spz1	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	34	44	+	10.9455	8.32e-05	0.77	AGGGGAGGAGC
Spz1	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	71	81	-	10.9455	8.32e-05	0.77	AGGGGAGGAGC
HEY2	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	+	10.569	8.32e-05	0.215	CGCACGTGCA
HEY2	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	-	10.569	8.32e-05	0.215	CGCACGTGCA
Hoxa11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597282..80597396,-__706.1.1.0	26	37	-	11.1129	8.32e-05	1	GCTCGTAAAGAC
Hoxa11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:80597302..80597416,-__707.1.1.0	46	57	-	11.1129	8.32e-05	1	GCTCGTAAAGAC
Hoxa11	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:80597330..80597444,-__708.1.1.0	74	85	-	11.1129	8.32e-05	1	GCTCGTAAAGAC
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	92	108	-	-6.20225	8.32e-05	1	AGAGATTAAAGGTGATT
ELK3	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	10.9483	8.32e-05	0.125	CCCGGATGTG
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	10.9483	8.32e-05	0.125	CCCGGATGTG
FOXC1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	42	52	+	11.16	8.32e-05	1	TAAGAAAATAA
FOXC1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	63	73	-	11.16	8.32e-05	1	TAAGAAAATAA
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	53	63	+	9.8	8.32e-05	0.269	AACCGGAACCG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	53	63	+	9.8	8.32e-05	0.269	AACCGGAACCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	53	63	+	9.8	8.32e-05	0.269	AACCGGAACCG
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	53	63	+	9.8	8.32e-05	0.269	AACCGGAACCG
SPDEF	WILDTYPE__mrna.noflip.NA__chr11:118972528..118972642,-__1252.1.0.0	38	48	-	9.8	8.32e-05	0.269	GCCCGGATCTT
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	3	12	-	11.26	8.32e-05	0.822	CTTGTGCAAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	3	12	-	11.26	8.32e-05	0.822	CTTGTGCAAT
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	3	12	-	11.26	8.32e-05	0.822	CTTGTGCAAT
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	66	80	-	9.72414	8.32e-05	0.506	AAAGTGAAGGACATG
ZNF740	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	4	13	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	6	15	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	3	12	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	10	19	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	19	28	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	20	29	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	20	29	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	20	29	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	22	31	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	22	31	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	25	34	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	28	37	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	32	41	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	24	33	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	24	33	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	30	39	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	52	61	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	57	66	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	57	66	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	49	58	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	53	62	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	55	64	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	55	64	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	82	91	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	84	93	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	78	87	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	81	90	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	96	105	+	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	87	96	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	102	111	-	10.2844	8.32e-05	0.0553	CCCTCCCCCC
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	31	45	-	6.69737	8.32e-05	0.277	TCACTGACTCCGCCC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	13	+	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	13	+	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
Myod1	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	18	+	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
Myod1	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	65	77	+	11.2653	8.32e-05	0.193	GCCACCTGCTGGG
Myod1	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	93	105	+	11.2653	8.32e-05	0.193	GCCACCTGCTGGG
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	97	109	-	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	97	109	-	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
Myod1	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	102	114	-	11.2653	8.32e-05	0.193	GGCAGCTGCGGAC
GSC2	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	7	16	+	10.5593	8.32e-05	1	TTTAATCCTC
GSC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	38	47	+	10.5593	8.32e-05	1	TTTAATCCTC
GSC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	38	47	+	10.5593	8.32e-05	1	TTTAATCCTC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	4	14	+	11.0213	8.32e-05	0.275	TATGAGTCAGC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	4	14	+	11.0213	8.32e-05	0.275	TATGAGTCAGC
GLIS3	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	16	29	+	3.04545	8.32e-05	0.379	CACCCCCCTCGTTT
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	38	51	+	3.04545	8.32e-05	0.379	CGCCCCCCGCAGGG
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	84	97	-	3.04545	8.32e-05	0.379	GAGCCCCCGAGGAG
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	84	97	-	3.04545	8.32e-05	0.379	GAGCCCCCGAGGAG
NFKB2	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	41	53	+	7.59091	8.33e-05	0.264	GCGGGCTGCCCCT
NFKB2	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	62	74	-	7.59091	8.33e-05	0.264	GCGGGCTGCCCCT
SP4	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	25	41	+	3.03636	8.33e-05	0.0331	CAGGGCCCGCCCCCAGC
SP4	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	56	72	+	3.03636	8.33e-05	0.0331	ATGTCCCCGCCCCGGTT
SP4	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	41	57	-	3.03636	8.33e-05	0.0331	CCAGCCCCGCGCTCCTC
SP4	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	58	74	+	3.03636	8.33e-05	0.0331	CCAGCCCCGCGCTCCTC
SP4	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	43	59	-	3.03636	8.33e-05	0.0331	ATGTCCCCGCCCCGGTT
NFYB	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	11	25	+	10.0962	8.33e-05	0.216	AACGAGGCCAATTAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	22	39	+	-15.6447	8.33e-05	0.0547	GGAAGGGAGGGAAAGAAG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr14:61789501..61789615,+__2365.1.0.0	27	44	+	-15.6447	8.33e-05	0.0547	GGAAGGAGTGATACAAAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	89	106	+	-15.6447	8.33e-05	0.0547	GGAAGGGAGGGAAAGAAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	9	26	-	-15.6447	8.33e-05	0.0547	GGAAGGGAGGGAAAGAAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr14:61789501..61789615,-__294.1.0.0	71	88	-	-15.6447	8.33e-05	0.0547	GGAAGGAGTGATACAAAA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	76	93	-	-15.6447	8.33e-05	0.0547	GGAAGGGAGGGAAAGAAG
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	5	19	-	9.94545	8.33e-05	0.111	TCCCTCCTACTGTTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	16	30	-	9.94545	8.33e-05	0.111	GCACCCACGCGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	16	30	-	9.94545	8.33e-05	0.111	GCACCCACGCGGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	16	30	-	9.94545	8.33e-05	0.111	GCACCCACGCGGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.1	35	49	-	9.94545	8.33e-05	0.111	GGGCGCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.1.0	35	49	-	9.94545	8.33e-05	0.111	GGGCGCCCGCGGCGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.2.0	35	49	-	9.94545	8.33e-05	0.111	GGGCGCCCGCGGCGG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49044691..49044805,+__1622.1.0.0	35	49	-	9.94545	8.33e-05	0.111	GGGCGCCCGCGGCGG
Hes1	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	-	9.79021	8.33e-05	0.122	GACACGTGAC
Hes1	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	-	9.79021	8.33e-05	0.122	GACACGTGAC
Hes1	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	-	9.79021	8.33e-05	0.122	GACACGTGAC
Hes1	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	+	9.79021	8.33e-05	0.122	GACACGTGAC
Hes1	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	+	9.79021	8.33e-05	0.122	GACACGTGAC
Hes1	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	+	9.79021	8.33e-05	0.122	GACACGTGAC
Zfx	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	28	41	-	10.2879	8.33e-05	0.0668	GGGACAGCGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	57	70	+	10.2879	8.33e-05	0.0668	CTGGCCGCCGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	58	71	+	10.2879	8.33e-05	0.0668	CTGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	58	71	+	10.2879	8.33e-05	0.0668	CTGGCCCCGCCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	45	58	-	10.2879	8.33e-05	0.0668	CTGGCCGCCGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	69	82	-	10.2879	8.33e-05	0.0668	GCGGGGGAGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	99	112	+	10.2879	8.33e-05	0.0668	CTGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	99	112	+	10.2879	8.33e-05	0.0668	CTGGCCCCGCCCTG
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	87	103	+	2.5082	8.33e-05	0.563	GGTTCGTTTAGAGGTAA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	87	103	+	2.5082	8.33e-05	0.563	GGTTCGTTTAGAGGTAA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	+	9.39344	8.33e-05	0.0644	CCCCCTGGCGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	+	9.39344	8.33e-05	0.0644	CCCCCTGGCGGGA
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	91	103	-	9.39344	8.33e-05	0.0644	TCCCGCGGAGGCT
TFAP4	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	94	103	+	10.2545	8.33e-05	0.655	GACAGCTGAA
MSC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	37	46	+	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	37	46	+	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	FLIPPED__Enhancer.flip.antisense__chr5:25910755..25910869,-__2881.1.0.0	91	100	+	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	WILDTYPE__Enhancer.flip.sense__chr5:25910755..25910869,+__1911.1.0.0	15	24	-	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	52	61	-	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	52	61	-	9.7439	8.33e-05	0.569	GCCAGCTTTT
MSC	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	69	78	-	9.7439	8.33e-05	0.569	GCCAGCTTTT
GCM1	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	15	25	-	10.4286	8.33e-05	0.551	ACTGCGGGTGG
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	3	14	-	10.4737	8.33e-05	0.0372	TACCCCCCCACT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	3	14	-	10.4737	8.33e-05	0.0372	TACCCCCCCACT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	42	53	-	10.4737	8.33e-05	0.0372	GAAACGCCTACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	42	53	-	10.4737	8.33e-05	0.0372	GAAACGCCTACC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	42	53	-	10.4737	8.33e-05	0.0372	GAAACGCCTACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	42	53	-	10.4737	8.33e-05	0.0372	GAAACGCCTACC
NOTO	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	70	79	+	10.86	8.33e-05	1	ATTAATTAAC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	20	39	-	3.02752	8.33e-05	0.072	CGCCCAACCTCCGCCCCCGC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	4	23	+	3.02752	8.33e-05	0.072	ACACAACACGCACAACATAA
RREB1	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	75	94	+	3.02752	8.33e-05	0.072	CGCCCAACCTCCGCCCCCGC
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	1	11	+	10.5818	8.33e-05	0.0718	GGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	18	28	-	10.5818	8.33e-05	0.0718	GGCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	104	114	-	10.5818	8.33e-05	0.0718	GGCCGCAGGCC
PKNOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	20	+	1.77551	8.33e-05	1	AGGCAGCTGACA
PKNOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	20	+	1.77551	8.33e-05	1	AGGCAGCTGACA
PKNOX1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	51	62	-	1.77551	8.33e-05	1	ACACAGCTGTCT
ETV1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	11.1091	8.33e-05	0.121	AACGGAAGCA
ETV1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	11.1091	8.33e-05	0.121	AACGGAAGCA
ETV1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	11.1091	8.33e-05	0.121	AACGGAAGCA
ZBTB7C	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	3	14	+	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	36	47	+	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	36	47	+	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	26	37	-	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	78	89	+	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	93	104	-	10.8871	8.33e-05	0.281	CCAACCACCCCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	93	104	-	10.8871	8.33e-05	0.281	CCAACCACCCCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	101	112	-	10.8871	8.33e-05	0.281	GCCCCCACCCAC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.1.0	101	112	-	10.8871	8.33e-05	0.281	GCCCCCACCCAC
NFE2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	92	102	-	5.02041	8.33e-05	0.378	CATGTGTCATC
NFE2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	13	23	+	5.02041	8.33e-05	0.378	CATGTGTCATC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	39	51	-	9.2931	8.33e-05	0.0573	CCCCCGCGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	39	51	-	9.2931	8.33e-05	0.0573	CCCCCGCGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	52	64	+	9.2931	8.33e-05	0.0573	CCCCCGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	52	64	+	9.2931	8.33e-05	0.0573	CCCCCGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	52	64	+	9.2931	8.33e-05	0.0573	CCCCCGCGCGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	86	98	-	9.2931	8.33e-05	0.0573	CGCCCGGCCGGGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	54	68	+	7.55714	8.33e-05	0.122	TCCCTCCCGCGAGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	54	68	+	7.55714	8.33e-05	0.122	TCCCTCCCGCGAGGC
ZIC3	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	47	61	-	7.55714	8.33e-05	0.122	TCCCTCCCGCGAGGC
ZIC3	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	89	103	-	7.55714	8.33e-05	0.122	ACCCTCCTCCGGTGC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	45	56	-	10.1034	8.33e-05	0.365	GCGCCCCCCCTG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	45	56	-	10.1034	8.33e-05	0.365	GCGCCCCCCCTG
REST	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	62	82	+	4.54082	8.34e-05	0.236	GTTGGGACCGCGGAGGGCATT
Mecom	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	4	17	+	7.83146	8.34e-05	1	GTGACAAGACCAAT
Mecom	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	98	111	-	7.83146	8.34e-05	1	GTGACAAGACCAAT
EGR2	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	1	11	+	9.03448	8.34e-05	0.0862	CTGCCCCCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	104	114	-	9.03448	8.34e-05	0.0862	CTGCCCCCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	104	114	-	9.03448	8.34e-05	0.0862	CTGCCCCCGCT
T	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	12	27	+	7.32692	8.34e-05	1	CCGCACGTGGGTGCCG
T	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	88	103	-	7.32692	8.34e-05	1	CCGCACGTGGGTGCCG
FIGLA	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	22	-	11.3793	8.34e-05	0.859	ACCAGCTGGC
FIGLA	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	102	+	11.3793	8.34e-05	0.859	ACCAGCTGGC
FIGLA	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	106	+	11.3793	8.34e-05	0.859	ACCAGCTGGC
TFAP2C	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	38	+	10.8673	8.34e-05	0.0876	CGCCCTGGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	7	18	-	10.8673	8.34e-05	0.0876	TGCCTCAAGCCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	7	18	-	10.8673	8.34e-05	0.0876	TGCCTCAAGCCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	17	28	-	10.8673	8.34e-05	0.0876	CGCCCTGGGGGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	67	-	10.8727	8.34e-05	0.0741	TTCCTTCCGGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	31	41	+	10.8727	8.34e-05	0.0741	GCCTTTCCGGT
JUN(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	11	24	+	10.7308	8.34e-05	0.228	CCAGGCTGAGTCAC
JUN(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	11	24	+	10.7308	8.34e-05	0.228	CCAGGCTGAGTCAC
JUN(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	92	105	-	10.7308	8.34e-05	0.228	CCAGGCTGAGTCAC
TBX15	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	21	28	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	22	29	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	32	39	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	32	39	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	39	46	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	44	51	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	48	55	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	70	77	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.1.0	74	81	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:44441554..44441668,+__1379.1.0.0	74	81	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	83	90	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	85	92	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	86	93	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	97	104	-	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	97	104	-	10.7115	8.34e-05	0.661	AGGTGGGA
MGA	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	42	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	74	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	88	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	103	110	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	113	-	11.2576	8.34e-05	0.816	AGGTGCGA
TBX15	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	18	25	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	22	29	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	23	30	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	38	45	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	41	48	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	60	67	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	61	68	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	67	74	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	69	76	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	73	80	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	76	83	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	87	94	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	87	94	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	92	99	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	92	99	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	105	112	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	105	112	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	105	112	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	105	112	+	10.7115	8.34e-05	0.661	AGGTGGGA
TBX15	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	105	112	+	10.7115	8.34e-05	0.661	AGGTGGGA
MGA	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	12	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	34	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	34	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	34	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	34	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	34	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	41	48	+	11.2576	8.34e-05	0.816	AGGTGCGA
MGA	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	73	80	+	11.2576	8.34e-05	0.816	AGGTGCGA
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	7	17	+	10.3333	8.34e-05	1	AAGGTGTCATG
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	7	17	+	10.3333	8.34e-05	1	AAGGTGTCATG
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	27	37	+	10.3333	8.34e-05	1	AAGGTGTCATG
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	27	37	+	10.3333	8.34e-05	1	AAGGTGTCATG
FOXC2	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	103	114	+	11.0792	8.34e-05	1	TAAGCCAACAAC
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.1	4	14	-	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.2.0	4	14	-	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.1.0	4	14	-	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:235363204..235363318,-__424.1.0.0	4	14	-	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	23	-	9.91803	8.34e-05	0.183	ACCCGGAAACG
ETV2	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	34	-	9.91803	8.34e-05	0.183	ACCCGGAAACG
ETV2	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	41	51	-	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	69	79	+	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	69	79	+	9.91803	8.34e-05	0.183	AAGAGGAAACA
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	81	91	+	9.91803	8.34e-05	0.183	ACCCGGAAACG
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	81	91	+	9.91803	8.34e-05	0.183	ACCCGGAAACG
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,+__1990.1.0.0	19	33	-	10.431	8.34e-05	0.834	GTGTTCTGATGAAAT
Stat6	WILDTYPE__Enhancer.noflip.NA__chr7:106065534..106065648,-__2283.1.0.0	82	96	+	10.431	8.34e-05	0.834	GTGTTCTGATGAAAT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	43	57	-	5.7069	8.34e-05	0.0418	CCCCACCCAGGCTCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	43	57	-	5.7069	8.34e-05	0.0418	CCCCACCCAGGCTCT
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	17	32	+	6.12069	8.34e-05	0.376	GGTTTCCAAGGTGAAG
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	17	32	+	6.12069	8.34e-05	0.376	GGTTTCCAAGGTGAAG
NRL	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	1	11	+	10.5962	8.34e-05	0.823	GTGGTGCTGAC
NRL	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	34	44	+	10.5962	8.34e-05	0.823	GGCCTGCTGAC
NRL	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	71	81	-	10.5962	8.34e-05	0.823	GTGGTGCTGAC
NRL	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	71	81	-	10.5962	8.34e-05	0.823	GGCCTGCTGAC
E2F4	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	20	30	+	10.3276	8.34e-05	0.0512	CGGCGGGGGAA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	27	37	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	27	37	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	69	79	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	69	79	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	69	79	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	69	79	+	10.3276	8.34e-05	0.0512	TGGCGGGGGGC
E2F4	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	94	104	+	10.3276	8.34e-05	0.0512	GAGCGGGAATC
NR2C2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	17	31	+	8.87143	8.35e-05	0.122	GCGGGGCGGGGGCGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	23	37	+	8.87143	8.35e-05	0.122	TGGGGGGAGGGGTAG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	27	41	+	8.87143	8.35e-05	0.122	GAAGGGGAGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	27	41	+	8.87143	8.35e-05	0.122	GAAGGGGAGGGGGGG
NR2C2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	13	27	-	8.87143	8.35e-05	0.122	GCGGGGCGGGGGCGA
NR2C2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	40	54	+	8.87143	8.35e-05	0.122	GTGTGGGAAAGGGCA
NR2C2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	40	54	+	8.87143	8.35e-05	0.122	GTGTGGGAAAGGGCA
NR2C2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	62	76	-	8.87143	8.35e-05	0.122	GTGTGGGAAAGGGCA
NR2C2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	88	102	+	8.87143	8.35e-05	0.122	GCGGGGCGGGGGCGA
NR2C2	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	78	92	-	8.87143	8.35e-05	0.122	TGGGGGGAGGGGTAG
NR2C2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	84	98	-	8.87143	8.35e-05	0.122	GCGGGGCGGGGGCGA
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	22	31	+	10.5286	8.35e-05	0.246	AGCAACTGCC
OLIG2	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	33	42	+	10.8621	8.35e-05	1	AACATATTTT
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	68	78	-	11.2245	8.35e-05	0.198	GGCAGGTGGGC
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	68	78	-	11.2245	8.35e-05	0.198	GGCAGGTGGGC
BATF3	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	79	92	+	0.0151515	8.35e-05	0.249	CAGTGACGCCATCA
CREB3L1	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	13	26	-	8.01515	8.35e-05	0.349	GCGCCGCGTCGGCG
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	89	102	+	8.01515	8.35e-05	0.349	GCGCCGCGTCGGCG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	89	102	+	8.01515	8.35e-05	0.349	GCGCCGCGTCGGCG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	89	102	+	8.01515	8.35e-05	0.349	GCGCCGCGTCGGCG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	89	102	+	8.01515	8.35e-05	0.349	GCGCCGCGTCGGCG
HES7	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	29	40	+	2.55172	8.35e-05	0.207	GCGCACGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	36	47	+	2.55172	8.35e-05	0.207	GCGCACGCGCCG
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	36	47	+	2.55172	8.35e-05	0.207	GCGCACGCGCCG
HES7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	69	80	-	2.55172	8.35e-05	0.207	CGGCCCCTGCCG
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	69	80	-	2.55172	8.35e-05	0.207	CGGCCCCTGCCG
HES7	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	93	104	-	2.55172	8.35e-05	0.207	CGGCACCCGCCG
MAFF	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	7	24	+	10.4889	8.35e-05	0.965	GATGAGTAAGCAACTCAC
MAFF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	91	108	-	10.4889	8.35e-05	0.965	GATGAGTAAGCAACTCAC
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	91	108	-	10.4889	8.35e-05	0.965	GATGAGTAAGCAACTCAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	2	19	+	-15.6579	8.35e-05	0.0547	GAGGGGAGGGGAGGCCGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	2	19	+	-15.6579	8.35e-05	0.0547	GAGGGGAGGGGAGGCCGT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	76	93	+	-15.6579	8.35e-05	0.0547	GAGGGGAGGGGAGGCCGT
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	77	94	+	-15.6579	8.35e-05	0.0547	GGTAGAGAGGGAGAAGTG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	10	27	-	-15.6579	8.35e-05	0.0547	GGAGGGATGGGAGGGGTA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	22	39	-	-15.6579	8.35e-05	0.0547	GAGGGGAGGGGAGGCCGT
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	96	113	-	-15.6579	8.35e-05	0.0547	GAGGGGAGGGGAGGCCGT
FOXF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	18	31	-	10.4444	8.35e-05	1	GTTCGGTAAACAGA
FOXF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	18	31	-	10.4444	8.35e-05	1	GTTCGGTAAACAGA
MLX	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	17	26	+	9.62857	8.35e-05	0.332	GTCGCGTGGT
MLX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	65	74	+	9.62857	8.35e-05	0.332	GTCACGTGGG
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	65	74	+	9.62857	8.35e-05	0.332	GTCACGTGGG
MLX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	65	74	+	9.62857	8.35e-05	0.332	GTCACGTGGG
MLX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	65	74	+	9.62857	8.35e-05	0.332	GTCACGTGGG
MLX	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	41	50	-	9.62857	8.35e-05	0.332	GTCACGTGGG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	80	89	+	11.0385	8.35e-05	0.148	AACGGAAATC
FEV	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
FEV	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	11.0385	8.35e-05	0.148	AGCGGAAGCG
MEF2B	WILDTYPE__Enhancer.noflip.NA__chr5:159886329..159886443,+__1806.1.0.0	66	77	+	6.05455	8.35e-05	1	TCTAATCATAGC
GLIS3	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	35	48	+	3.0303	8.36e-05	0.379	GCCCCTCTACGGAG
GLIS3	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	67	80	-	3.0303	8.36e-05	0.379	GCCCCTCTACGGAG
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	81	95	-	10.3654	8.36e-05	0.35	TGAGAGCAAAGGCTG
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	81	95	-	10.3654	8.36e-05	0.35	TGAGAGCAAAGGCTG
Foxd3	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	52	63	-	10.9674	8.36e-05	1	AATTGTTTAATC
FOXB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	44	54	-	10.7885	8.36e-05	1	TAAGTCAACAG
Esrra	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	75	85	-	6.83636	8.36e-05	1	TTCAAGGACGT
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	40	54	-	9.94545	8.36e-05	0.343	GGGAAGGGAGAGGCG
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	40	54	-	9.94545	8.36e-05	0.343	GGGAAGGGAGAGGCG
PRDM1	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	78	92	-	9.94545	8.36e-05	0.343	GACAAGAAAAAGTAA
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	9	23	-	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	9	23	-	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
SP2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	25	39	+	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	25	39	+	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	16	30	-	9.93103	8.36e-05	0.0174	TTTCCTCCCCGCGCC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	16	30	-	9.93103	8.36e-05	0.0174	TTTCCTCCCCGCGCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	16	30	-	9.93103	8.36e-05	0.0174	TTTCCTCCCCGCGCC
SP2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	16	30	-	9.93103	8.36e-05	0.0174	TTTCCTCCCCGCGCC
SP2	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	33	47	+	9.93103	8.36e-05	0.0174	CCTCCTCCCTCCTCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	24	38	-	9.93103	8.36e-05	0.0174	CCTCCTCCCCGCCTC
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	35	49	-	9.93103	8.36e-05	0.0174	CCTCCTCCCCGCCTC
SP2	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	54	68	+	9.93103	8.36e-05	0.0174	CTTCCGCCTCGGCTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	56	70	+	9.93103	8.36e-05	0.0174	TCCCCACCCTTGCAG
SP2	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	85	99	+	9.93103	8.36e-05	0.0174	TTTCCTCCCCGCGCC
SP2	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	76	90	-	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
SP2	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	92	106	+	9.93103	8.36e-05	0.0174	CCCCTGCCCCGCCTC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	19	28	+	10.4231	8.36e-05	0.306	CCCACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	19	28	+	10.4231	8.36e-05	0.306	CCCACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	19	28	+	10.4231	8.36e-05	0.306	CCCACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	19	28	+	10.4231	8.36e-05	0.306	CCCACGTGAT
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	19	28	+	10.4231	8.36e-05	0.306	CCCACGTGAT
CREB3	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	61	74	-	9.22857	8.36e-05	0.306	CAGCCACGTCCCCT
Myog	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	11	21	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	16	26	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	21	31	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	26	36	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	51	61	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	51	61	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	68	78	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	79	89	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.0.0	82	92	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.1.0	82	92	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	84	94	+	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	89	99	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
Myog	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	94	104	-	11.2653	8.36e-05	0.18	CACAGCTGAAA
INSM1	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	61	72	-	9.23469	8.36e-05	0.195	GTGAAGGGGGAG
INSM1	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	43	54	+	9.23469	8.36e-05	0.195	GTGAAGGGGGAG
INSM1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	102	113	+	9.23469	8.36e-05	0.195	GTGTAGGGGTCG
HES5	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	6	17	-	1.77586	8.36e-05	0.298	TGGCACGTGGGC
RORA(var.2)	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	71	84	+	6.37079	8.36e-05	1	TAAAACAGGGTCAC
RORA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	71	84	+	6.37079	8.36e-05	1	TAAAACAGGGTCAC
RORA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	71	84	+	6.37079	8.36e-05	1	TAAAACAGGGTCAC
RORA(var.2)	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	71	84	+	6.37079	8.36e-05	1	TAAAACAGGGTCAC
RORA(var.2)	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	71	84	+	6.37079	8.36e-05	1	TAAAACAGGGTCAC
RORA(var.2)	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	31	44	-	6.37079	8.36e-05	1	TAAAACAGGGTCAC
SCRT2	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	36	48	+	6.04918	8.36e-05	1	TTTCCACAGGTAT
SCRT2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	73	85	+	6.04918	8.36e-05	1	TTTCCACAGGTAT
SCRT2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	73	85	+	6.04918	8.36e-05	1	TTTCCACAGGTAT
YY2	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	30	40	-	10.8182	8.36e-05	0.411	GTCCGCCTTTG
YY2	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	75	85	+	10.8182	8.36e-05	0.411	GTCCGCCTTTG
RXRB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	49	62	-	-0.145455	8.36e-05	0.554	CGGGCCGAAGGTCG
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	49	62	-	-0.145455	8.36e-05	0.554	CGGGCCGAAGGTCG
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	49	62	-	-0.145455	8.36e-05	0.554	CGGGCCGAAGGTCG
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	49	62	-	-0.145455	8.36e-05	0.554	CGGGCCGAAGGTCG
HOXA13	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	3	12	-	11.0694	8.36e-05	1	CCCATAAAGC
HOXA13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	15	24	-	11.0694	8.36e-05	1	CCCATAAAGC
HOXA13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	15	24	-	11.0694	8.36e-05	1	CCCATAAAGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	65	75	-	10.4426	8.36e-05	0.076	CCGGAAGGCAG
HOXA10	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	26	36	+	10.6604	8.37e-05	1	CATAATAAAAA
HOXA10	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	26	36	+	10.6604	8.37e-05	1	CATAATAAAAA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	35	48	+	8.22414	8.37e-05	0.0396	CGCCACTCCTCCCT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	35	48	+	8.22414	8.37e-05	0.0396	CGCCACTCCTCCCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	35	48	+	8.22414	8.37e-05	0.0396	CGCCACTCCTCCCT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	35	48	+	8.22414	8.37e-05	0.0396	CGCCACTCCTCCCT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	36	49	+	8.22414	8.37e-05	0.0396	GGCCACGCTCTCTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	36	49	+	8.22414	8.37e-05	0.0396	GGCCACGCTCTCTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	36	49	+	8.22414	8.37e-05	0.0396	GGCCACGCTCTCTC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	36	49	+	8.22414	8.37e-05	0.0396	GGCCACGCTCTCTC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	66	79	-	8.22414	8.37e-05	0.0396	GGAGCCGCCCCCTG
NRF1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	16	26	+	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	13	23	-	9.47273	8.37e-05	0.0233	GAGGCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	28	38	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	28	38	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	28	38	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	28	38	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	35	45	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	43	53	-	9.47273	8.37e-05	0.0233	GAGGCGGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	89	99	-	9.47273	8.37e-05	0.0233	CCGCCCGCCCA
NRF1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	93	103	-	9.47273	8.37e-05	0.0233	GAGGCGGCGCC
TAL1::TCF3	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	24	35	-	10.4831	8.37e-05	1	AGAACACATGTT
SMAD3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.1	105	114	-	9.03636	8.37e-05	1	AGTCTAGCCG
SMAD3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.1.0	105	114	-	9.03636	8.37e-05	1	AGTCTAGCCG
SMAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:179851151..179851265,+__961.1.0.0	105	114	-	9.03636	8.37e-05	1	AGTCTAGCCG
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	17	30	+	8.21212	8.37e-05	0.454	GAGGTGAAGGGGCG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	2	12	+	9.78182	8.37e-05	0.269	TCCCGGAACTG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	2	12	+	9.78182	8.37e-05	0.269	TCCCGGAACTG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	30	43	-	5.68085	8.37e-05	0.105	TGCCGCCCACTGTC
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	72	85	+	5.68085	8.37e-05	0.105	TGCCGCCCACTGTC
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	72	85	+	5.68085	8.37e-05	0.105	TGCCGCCCACTGTC
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	35	51	-	-3.33333	8.37e-05	0.861	GTGTCATGCTGACGTCA
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	11	27	+	-3.33333	8.37e-05	0.861	GTGTCATGCTGACGTCA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	4	24	-	9.20408	8.37e-05	0.022	GAGGGCGGGGGGGCGTGGCAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	20	40	-	9.20408	8.37e-05	0.022	GAGAGCAGGGGGGGAAGGAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	34	54	-	9.20408	8.37e-05	0.022	GGGAGCGCGGGGGAGAGAAAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	40	60	-	9.20408	8.37e-05	0.022	GAGGGCGGGGGGGCGTGGCAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	40	60	-	9.20408	8.37e-05	0.022	GAGGGCGGGGGGGCGTGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	42	62	-	9.20408	8.37e-05	0.022	GGAGCGGGAGCATGGTGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	42	62	-	9.20408	8.37e-05	0.022	GGAGCGGGAGCATGGTGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	56	76	-	9.20408	8.37e-05	0.022	GGGTCCGGAAAAGAAAGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	56	76	-	9.20408	8.37e-05	0.022	GGGTCCGGAAAAGAAAGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	56	76	-	9.20408	8.37e-05	0.022	GGGTCCGGAAAAGAAAGAGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	56	76	-	9.20408	8.37e-05	0.022	GGGTCCGGAAAAGAAAGAGAA
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	58	78	-	9.20408	8.37e-05	0.022	AGGGGAGCACGTGGGGGACGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	60	80	-	9.20408	8.37e-05	0.022	TGAGGAAGCAGTAGCAAGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	63	83	-	9.20408	8.37e-05	0.022	AGAGGCTGGAGGGCAGGGCAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	78	98	-	9.20408	8.37e-05	0.022	GGAAGTGGGGAGAACAGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	78	98	-	9.20408	8.37e-05	0.022	GGAAGTGGGGAGAACAGGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	78	98	-	9.20408	8.37e-05	0.022	GGAAGTGGGGAGAACAGGGAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	78	98	-	9.20408	8.37e-05	0.022	GGAAGTGGGGAGAACAGGGAA
ZNF263	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	83	103	-	9.20408	8.37e-05	0.022	GGGGGATGGTGGGTGGGTACA
ZNF263	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	12	32	+	9.20408	8.37e-05	0.022	GGGGGATGGTGGGTGGGTACA
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	34	54	+	9.20408	8.37e-05	0.022	AGAGGCTGGAGGGCAGGGCAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	61	81	+	9.20408	8.37e-05	0.022	GAGGGCGGGGGGGCGTGGCAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	61	81	+	9.20408	8.37e-05	0.022	GAGGGCGGGGGGGCGTGGCAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	66	86	+	9.20408	8.37e-05	0.022	GGGGAAGACAAGGAAGGAACA
Rxra	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	4	17	+	2.31707	8.37e-05	0.51	AAGTTCATTGGTCA
TCF3	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	11	20	+	11.9231	8.37e-05	0.404	CCCACCTGGA
HINFP	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	17	28	+	10.2727	8.37e-05	0.109	TCACGTCCTCGC
HINFP	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	87	98	-	10.2727	8.37e-05	0.109	TCACGTCCTCGC
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	-	7.66972	8.37e-05	0.855	TGACAAATGTGA
TGIF2	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	+	7.66972	8.37e-05	0.855	TGACAAATGTGA
FOSL2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	14	24	+	10.0182	8.37e-05	0.25	GGCTGAGTCAC
FOSL2	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	14	24	+	10.0182	8.37e-05	0.25	GGCTGAGTCAC
FOSL2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	92	102	-	10.0182	8.37e-05	0.25	GGCTGAGTCAC
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	9	22	+	9.80769	8.37e-05	0.0293	ACCCAGCCTCCTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	34	47	-	9.80769	8.37e-05	0.0293	GCGCCGCTCACGGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	34	47	-	9.80769	8.37e-05	0.0293	GCGCCGCTCACGGA
EGR1	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	69	82	-	9.80769	8.37e-05	0.0293	TCTCCACCCCTTCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	88	101	-	9.80769	8.37e-05	0.0293	TTACCTCCGCCGCA
EGR1	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	91	104	-	9.80769	8.37e-05	0.0293	GACCCTCCTCCGGT
Crx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	97	107	+	10.9483	8.37e-05	1	AGCGGGATTAG
Crx	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	97	107	+	10.9483	8.37e-05	1	AGCGGGATTAG
DBP	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	10	21	-	10.9057	8.38e-05	1	AGTTACGCAATT
DBP	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	10	21	-	10.9057	8.38e-05	1	AGTTACGCAATT
DBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	10	21	-	10.9057	8.38e-05	1	AGTTACGCAATT
DBP	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	10	21	-	10.9057	8.38e-05	1	AGTTACGCAATT
DBP	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	16	+	10.9057	8.38e-05	1	AGTTACGCAATT
DBP	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	105	+	10.9057	8.38e-05	1	AGTTACGCAATT
LEF1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	43	57	-	8.1129	8.38e-05	1	AAACATGAAGGGAGA
LEF1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	58	72	+	8.1129	8.38e-05	1	AAACATGAAGGGAGA
GLIS2	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	42	55	-	7.60656	8.38e-05	0.186	TACCCCCAGGAGCC
GLIS2	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	60	73	+	7.60656	8.38e-05	0.186	TACCCCCAGGAGCC
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145742837..145742951,-__1693.1.1.0	66	75	+	10.6286	8.38e-05	0.126	ACCGGGAGTA
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	50	64	+	9.83333	8.38e-05	0.123	ATGTCGCGGGAGCGG
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	50	64	+	9.83333	8.38e-05	0.123	ATGTCGCGGGAGCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	50	64	+	9.83333	8.38e-05	0.123	ATGTCGCGGGAGCGG
RREB1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	13	32	-	3.00917	8.38e-05	0.0722	CCCCCTCCCGCCCCCGCCGC
RREB1	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	8	27	+	3.00917	8.38e-05	0.0722	CACGCCATCAGCACCCCCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	13	27	-	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	13	27	-	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	46	60	+	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	46	60	+	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	46	60	+	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	46	60	+	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	63	77	-	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	63	77	-	7.68852	8.38e-05	0.0727	AGCCCCGCCCCCGGG
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	+	9.37705	8.38e-05	0.0644	CGCCCGGGCGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	48	60	-	9.37705	8.38e-05	0.0644	AGCCTGGGAGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	79	91	+	9.37705	8.38e-05	0.0644	TGCCGCCCGGGGT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	79	91	+	9.37705	8.38e-05	0.0644	TGCCGCCCGGGGT
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	-	9.37705	8.38e-05	0.0644	CGCCCGGGCGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	98	110	+	9.37705	8.38e-05	0.0644	AGCCTGGGAGGGA
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	96	112	+	-6.8	8.38e-05	1	GCGGTCAGGTGAGGAGA
NFIA	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	42	51	+	12.1333	8.38e-05	1	CATGCCAAAT
NFIA	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	52	61	-	12.1333	8.38e-05	1	CATGCCAAAT
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	5	15	+	10.8269	8.38e-05	0.0758	TGCTCCAGGCA
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	3	13	-	10.8269	8.38e-05	0.0758	AGCCGCAGGGT
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	46	+	10.8269	8.38e-05	0.0758	AGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	45	55	-	10.8269	8.38e-05	0.0758	AGCCGCAGGGT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	56	66	+	10.8269	8.38e-05	0.0758	AGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	56	66	+	10.8269	8.38e-05	0.0758	AGCCCGGGGCC
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	60	70	+	10.8269	8.38e-05	0.0758	AGCCGCAGGGT
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	69	79	-	10.8269	8.38e-05	0.0758	AGCCCGGGGCC
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	102	112	+	10.8269	8.38e-05	0.0758	AGCCGCAGGGT
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	68	78	+	10.5918	8.38e-05	0.237	GGCAGGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	68	78	+	10.5918	8.38e-05	0.237	GGCAGGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	68	78	+	10.5918	8.38e-05	0.237	GGCAGGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	68	78	+	10.5918	8.38e-05	0.237	GGCAGGTGACA
Npas2	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	32	-	11.3279	8.38e-05	0.335	GCCACGTGAA
ONECUT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	21	34	+	8.95506	8.38e-05	1	TGAAAATCAAAAAG
NKX2-3	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	10	19	-	11.2885	8.38e-05	1	CACACTTGAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	24	34	-	10.4038	8.38e-05	0.0197	GCACCTCCCCT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	24	34	-	10.4038	8.38e-05	0.0197	GCACCTCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	37	47	+	10.4038	8.38e-05	0.0197	GCTCCTCCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	37	47	+	10.4038	8.38e-05	0.0197	GCTCCTCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	37	47	+	10.4038	8.38e-05	0.0197	GCTCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	37	47	+	10.4038	8.38e-05	0.0197	GCTCCTCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	31	41	-	10.4038	8.38e-05	0.0197	AGCCCGCCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	31	41	-	10.4038	8.38e-05	0.0197	AGCCCGCCCAC
SP1	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	84	+	10.4038	8.38e-05	0.0197	AGCCCGCCCAC
SP1	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	103	113	-	10.4038	8.38e-05	0.0197	GCTCCTCCCAG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	9	19	+	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	27	37	+	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	30	40	+	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	55	65	+	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	70	80	+	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	50	60	-	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	75	85	-	10.5636	8.38e-05	0.0718	AGCCGCGGGCC
GLIS1	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	3	18	+	-10.5577	8.38e-05	0.329	AGACCCGTCCCGGCGG
GLIS1	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	97	112	-	-10.5577	8.38e-05	0.329	AGACCCGTCCCGGCGG
TFAP2B	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	69	80	+	10.8909	8.38e-05	0.0926	TGCCCTGCGCCA
TFAP2B	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	35	46	-	10.8909	8.38e-05	0.0926	TGCCCTGCGCCA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	87	98	-	10.8909	8.38e-05	0.0926	GGCCCGGGGGGA
ID4	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	-	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	22	31	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	22	31	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	36	45	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	37	46	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	69	78	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
ID4	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	105	114	+	10.8361	8.38e-05	0.389	GGCAGCTGCC
HOXB3	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	-	9.94	8.38e-05	1	GGTAATTAAG
HOXB3	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	+	9.94	8.38e-05	1	GGTAATTAAG
EGR3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	2	16	+	5.68966	8.39e-05	0.0418	ACCCGCCCCTGCCCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:87564815..87564929,+__712.1.0.0	1	15	-	5.68966	8.39e-05	0.0418	CGCCTCCTCCGCTCT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	20	34	-	5.68966	8.39e-05	0.0418	TCACGCCGGCGCAGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	20	34	-	5.68966	8.39e-05	0.0418	TCACGCCGGCGCAGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	20	34	-	5.68966	8.39e-05	0.0418	TCACGCCGGCGCAGT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	20	34	-	5.68966	8.39e-05	0.0418	TCACGCCGGCGCAGT
EGR3	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	24	38	-	5.68966	8.39e-05	0.0418	CCACCCCCACGGACC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	46	60	+	5.68966	8.39e-05	0.0418	CGCCTCCTCCGCTCT
EGR3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	55	69	-	5.68966	8.39e-05	0.0418	CGCCTCCTCCGCTCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	75	89	+	5.68966	8.39e-05	0.0418	CGTCGCCGCCGCAAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	75	89	+	5.68966	8.39e-05	0.0418	CGTCGCCGCCGCAAC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	99	113	-	5.68966	8.39e-05	0.0418	ACCCGCCCCTGCCCC
EGR4	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	12	27	+	9.85455	8.39e-05	0.0416	CTAGGCCCGCCCACGT
EGR4	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	17	32	+	9.85455	8.39e-05	0.0416	TCCCGCCCCCTCTAGT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	8	23	-	9.85455	8.39e-05	0.0416	TCACCCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	8	23	-	9.85455	8.39e-05	0.0416	TCACCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	23	38	-	9.85455	8.39e-05	0.0416	CTCCGCCCCCACGGAT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	45	60	-	9.85455	8.39e-05	0.0416	CTCCGCCCCCACGGAT
EGR4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	88	103	-	9.85455	8.39e-05	0.0416	CTAGGCCCGCCCACGT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	88	103	-	9.85455	8.39e-05	0.0416	CTAGGCCCGCCCACGT
TEAD4	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	11	20	+	11.0968	8.39e-05	0.839	CGAATTCCAT
TEAD4	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	95	104	-	11.0968	8.39e-05	0.839	CGAATTCCAT
Myod1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	10	22	+	11.2449	8.39e-05	0.193	CCCAGCTGGCCCG
Myod1	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	43	55	+	11.2449	8.39e-05	0.193	CTCAGCTGTGGTT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	6	16	-	10.3103	8.39e-05	0.0512	GGGCGGGGGCT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	6	16	-	10.3103	8.39e-05	0.0512	GGGCGGGGGCT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	28	38	-	10.3103	8.39e-05	0.0512	GGGCGGGGGCT
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	35	45	-	10.3103	8.39e-05	0.0512	CCGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	59	69	+	10.3103	8.39e-05	0.0512	GGGCGGGGGCT
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	70	80	+	10.3103	8.39e-05	0.0512	CCGCGCGAGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	70	80	+	10.3103	8.39e-05	0.0512	CCGCGCGAGCG
RUNX2	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	18	26	+	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	25	33	+	11.25	8.39e-05	0.561	CGACCGCAA
RUNX2	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	48	56	-	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	64	72	+	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	67	75	-	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	67	75	-	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	67	75	-	11.25	8.39e-05	0.561	TAACCACAG
RUNX2	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	82	90	-	11.25	8.39e-05	0.561	CGACCGCAA
RUNX2	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	89	97	-	11.25	8.39e-05	0.561	TAACCACAG
E2F1	WILDTYPE__mrna.noflip.NA__chr1:156182718..156182832,+__1357.1.0.0	101	112	-	10.5738	8.39e-05	0.45	ATTGGCGCTACT
Spz1	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	4	14	+	10.9364	8.39e-05	0.77	GGGGGAAGAGC
Spz1	WILDTYPE__mrna.noflip.NA__chr13:24734779..24734893,+__1388.1.0.0	18	28	+	10.9364	8.39e-05	0.77	GGGGGAAGAGC
Spz1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	101	111	+	10.9364	8.39e-05	0.77	GGGGTTAGGGC
Spz1	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	101	111	-	10.9364	8.39e-05	0.77	GGGGGAAGAGC
FOXP2	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	50	60	+	11.1515	8.39e-05	1	TTATAAACACA
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	20	-	2.29508	8.39e-05	0.657	TGTCAGCTGCCT
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	20	-	2.29508	8.39e-05	0.657	TGTCAGCTGCCT
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	1	10	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	1	10	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	2	11	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	6	15	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	6	15	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	7	16	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	8	17	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	16	25	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	21	30	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	21	30	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	22	31	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	28	37	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	28	37	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	23	32	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	23	32	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	23	32	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	26	35	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	37	46	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	29	38	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	29	38	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	31	40	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:13984190..13984304,+__168.1.0.0	34	43	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	36	45	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	45	54	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	38	47	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	40	49	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	50	59	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	59	68	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	66	75	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	66	75	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	66	75	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	68	77	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	61	70	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	75	84	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	77	86	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	69	78	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	70	79	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	70	79	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	80	89	+	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	84	93	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	98	107	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	100	109	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	105	114	-	10.9798	8.39e-05	0.182	GGAGGGGAGG
TP53	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	47	64	-	5.91837	8.39e-05	1	GACGCGCCCGCGCACGCT
SP1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	31	41	-	10.3846	8.39e-05	0.0197	CGCCCTCCCCA
SP1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	74	84	+	10.3846	8.39e-05	0.0197	CGCCCTCCCCA
SP1	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	92	102	-	10.3846	8.39e-05	0.0197	CGCCCTCCCCA
PLAG1	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	63	76	-	4.91837	8.39e-05	0.0754	GTGGGCTCCTGGGG
PLAG1	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	39	52	+	4.91837	8.39e-05	0.0754	GTGGGCTCCTGGGG
T	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	15	30	+	7.30769	8.39e-05	1	TCCCACAGAGATGAGA
T	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	15	30	+	7.30769	8.39e-05	1	TCCCACAGAGATGAGA
CLOCK	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	40	49	+	10.8636	8.39e-05	0.585	AACAAGTGTT
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	90	99	-	10.8636	8.39e-05	0.585	AACAAGTGTT
CLOCK	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	90	99	-	10.8636	8.39e-05	0.585	AACAAGTGTT
CLOCK	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	90	99	-	10.8636	8.39e-05	0.585	AACAAGTGTT
RFX5	WILDTYPE__mrna.noflip.NA__chr1:91486995..91487109,-__969.1.0.0	70	85	-	6.10345	8.39e-05	0.377	CATTGCAATGGCGACC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	16	26	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	16	26	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	17	27	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	17	27	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	22	32	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE__mrna.noflip.NA__chr2:201936445..201936559,+__1347.1.0.0	29	39	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	45	55	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	47	57	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	47	57	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.2.0	61	71	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.0.0	61	71	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	61	71	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	61	71	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.1.0	61	71	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.1.0	102	112	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.0	102	112	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.0.0	102	112	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:136890491..136890605,+__901.1.2.1	102	112	+	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	5	15	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	10	20	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	20	30	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.1.0	30	40	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.1	30	40	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	30	40	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	30	40	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	FLIPPED__Antisense.flip.antisense__chr9:136890532..136890646,-__2732.1.0.0	44	54	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	57	67	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	57	67	-	10.7317	8.4e-05	0.0261	GCCCCGCCCTG
Gfi1b	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	73	83	+	10.7931	8.4e-05	0.597	AAACCTCAGAC
Tcf21	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	95	108	-	5.60526	8.4e-05	0.56	GCCCCAGCTGCTGG
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	60	71	-	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	60	71	-	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	63	74	-	10.4605	8.4e-05	0.0373	GCCCCACCCATA
SP8	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	74	85	-	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	14	25	+	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	30	41	+	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	49	60	+	10.4605	8.4e-05	0.0373	ACCACTCCCTCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	50	61	+	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	50	61	+	10.4605	8.4e-05	0.0373	CCCCCGCCCTCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	91	102	+	10.4605	8.4e-05	0.0373	CCCACGCCCGGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	91	102	+	10.4605	8.4e-05	0.0373	CCCACGCCCGGC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	72	81	+	10.4828	8.4e-05	0.149	TGCAGCTGTG
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	73	82	-	10.4828	8.4e-05	0.149	TGCAGCTGTG
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	73	82	-	10.4828	8.4e-05	0.149	TGCAGCTGTG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	73	82	-	10.4828	8.4e-05	0.149	TGCAGCTGTG
E2F6	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	45	55	-	10.5172	8.4e-05	0.0796	AGGTGGGAGCG
E2F6	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	82	92	-	10.5172	8.4e-05	0.0796	AGGTGGGAGCG
E2F6	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	23	33	+	10.5172	8.4e-05	0.0796	AGGTGGGAGCG
E2F6	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	60	70	+	10.5172	8.4e-05	0.0796	AGGTGGGAGCG
ETV2	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	37	47	-	9.88525	8.4e-05	0.183	CACAGGAAGCG
ETV2	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	49	59	+	9.88525	8.4e-05	0.183	CACAGGAAGCG
ETV2	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	68	78	+	9.88525	8.4e-05	0.183	CACAGGAAGCG
TCF4	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	61	70	-	11.5306	8.4e-05	0.422	GACACCTGTA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	19	31	+	7.56061	8.4e-05	0.264	GGGGAGACTCCCA
NFKB2	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	84	96	-	7.56061	8.4e-05	0.264	GGGGAGACTCCCA
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	57	69	+	7.67241	8.4e-05	0.183	CTCCAGGAAGCAA
ELF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	57	69	+	7.67241	8.4e-05	0.183	CTCCAGGAAGCAA
ELF3	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	46	58	-	7.67241	8.4e-05	0.183	CTCCAGGAAGCAA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	11	21	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	11	21	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	11	21	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	11	21	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	11	21	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	13	23	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	36	46	-	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	69	79	+	10.0862	8.4e-05	0.0256	CCCCGGCCCCC
ELF1	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	22	33	+	8.38182	8.4e-05	0.129	AAGGAGGAAGTG
ELF1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	51	62	+	8.38182	8.4e-05	0.129	GAAGCGGAAGCC
ELF1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	53	64	-	8.38182	8.4e-05	0.129	GAAGCGGAAGCC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr11:64660885..64660999,-__189.1.0.0	78	89	-	8.38182	8.4e-05	0.129	AAGGAGGAAGTG
ELF1	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	82	93	-	8.38182	8.4e-05	0.129	AAGGAGGAAGTG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	16	30	+	8.85714	8.4e-05	0.122	CGGGGGCTGGGGGGA
NR2C2	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	20	34	+	8.85714	8.4e-05	0.122	CGGGGGTGGGGGTGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	56	70	+	8.85714	8.4e-05	0.122	AGAGAGCAAGGGGGA
NR2C2	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	81	95	-	8.85714	8.4e-05	0.122	CGGGGGTGGGGGTGG
NR2C2	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	85	99	-	8.85714	8.4e-05	0.122	CGGGGGCTGGGGGGA
TBX20	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	15	25	-	10.3182	8.4e-05	1	TACGTGTAAAG
TBX20	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	90	100	+	10.3182	8.4e-05	1	TACGTGTAAAG
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	41	57	+	9.30612	8.4e-05	0.405	GGGTCAAACAAAGTCCT
GATA3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.1	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.3.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	35	42	+	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.1	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.3.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
GATA3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	71	78	-	12.6364	8.4e-05	1	AGATAAGC
Alx4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	3	19	-	10.6753	8.4e-05	1	CACTCCAATTAACTAAC
Alx4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	3	19	-	10.6753	8.4e-05	1	CTCTCCAATTAACTAAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	74	91	+	-15.6842	8.4e-05	0.0547	GGAGGCGGGGGTGGAGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	13	30	-	-15.6842	8.4e-05	0.0547	GGGGGAGGGGAAGGAGCC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	13	30	-	-15.6842	8.4e-05	0.0547	GGGGGAGGGGAAGGAGCC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	82	99	-	-15.6842	8.4e-05	0.0547	GGAAGGAACGGACGGAAA
RXRG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	66	79	+	0.914894	8.4e-05	0.489	CGGGGCAGGGGTGA
SPI1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	54	67	-	2.03636	8.41e-05	0.254	CAGAACCGGAAGCT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	18	32	-	9.07576	8.41e-05	0.355	ACAGCTTCCCTTTCC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	43	57	-	9.92727	8.41e-05	0.111	GCGCGCCCGCGGAGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	56	70	-	9.92727	8.41e-05	0.111	GCCCACCCCCTGCTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	39	53	+	9.92727	8.41e-05	0.111	GAGCCCCCGGCGCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	39	53	+	9.92727	8.41e-05	0.111	GAGCCCCCGGCGCGG
MEF2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.0.0	46	57	+	8.3871	8.41e-05	1	TCTAAATATAAG
MEF2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	46	57	+	8.3871	8.41e-05	1	TCTAAATATAAG
MNT	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	11.8485	8.41e-05	0.338	ACCACGTGAG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	10.7234	8.41e-05	0.138	ACCGGAAGAA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	10.7234	8.41e-05	0.138	ACCGGAAGAA
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	26	39	+	10.7115	8.41e-05	0.229	CCCTGGTGACTCAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	26	39	+	10.7115	8.41e-05	0.229	CCCTGGTGACTCAC
FOS	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	28	38	-	11	8.41e-05	0.275	AGTGAATCATG
FOS	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	40	50	+	11	8.41e-05	0.275	AGTGAATCATG
FOS	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	65	75	-	11	8.41e-05	0.275	AGTGAATCATG
FOS	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	77	87	+	11	8.41e-05	0.275	AGTGAATCATG
HOXB2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	9.73585	8.41e-05	1	CCTAATTAGA
PAX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	61	77	+	4.81818	8.41e-05	0.619	TGTCAAGCTTGAGCTCT
PAX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	61	77	+	4.81818	8.41e-05	0.619	TGTCAAGCTTGAGCTCT
PAX1	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	38	54	-	4.81818	8.41e-05	0.619	TGTCAAGCTTGAGCTCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	34	44	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	34	44	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	85	95	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	85	95	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	85	95	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	85	95	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	85	95	-	10.069	8.41e-05	0.0256	ACCACGCGCCC
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	7	16	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	7	16	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	7	16	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	7	16	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	7	16	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	39	48	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	51	60	+	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	39	48	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	39	48	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	67	76	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	67	76	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	67	76	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
ETS1	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	99	108	-	11.0345	8.41e-05	0.119	ACCGGAAAAG
NR1H2::RXRA	WILDTYPE__Antisense.noflip.NA__chr20:61297965..61298079,-__489.1.0.0	28	44	-	-6.24719	8.41e-05	1	CTACGTCACAGGACAGC
Neurog1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	73	82	-	10.1319	8.41e-05	1	TGCATATGGT
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	1	11	+	10	8.41e-05	0.25	CGCTGACTCAT
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	95	105	-	10	8.41e-05	0.25	TGCTGACTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	95	105	-	10	8.41e-05	0.25	TGCTGACTCAC
GLIS1	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	20	35	+	-10.5769	8.41e-05	0.329	CCACCCCTCCCGCCGC
GLIS1	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	80	95	-	-10.5769	8.41e-05	0.329	CCACCCCTCCCGCCGC
LHX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	11.1556	8.41e-05	1	TCTAATTAGT
ESR2	WILDTYPE__Lincrna.noflip.NA__chr3:147657712..147657826,+__551.1.0.0	80	94	-	10.3269	8.41e-05	0.472	GTGTCACTCTGCACT
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	45	56	+	10.871	8.42e-05	0.281	GAGACCCCCACA
INSM1	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	96	107	-	9.21429	8.42e-05	0.195	AGGCTGGGGTTG
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	57	65	+	8.93103	8.42e-05	0.359	TTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	70	78	+	8.93103	8.42e-05	0.359	TTGACTCAT
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	4	12	-	8.93103	8.42e-05	0.359	TTGACTCAT
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	4	12	-	8.93103	8.42e-05	0.359	TTGACTCAT
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	37	45	-	8.93103	8.42e-05	0.359	TTGACTCAT
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	50	58	-	8.93103	8.42e-05	0.359	TTGACTCAT
ZBED1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	53	65	+	5.2	8.42e-05	1	CTGTTGCGACTGG
ZBED1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	53	65	+	5.2	8.42e-05	1	CTGTTGCGACTGG
ZBED1	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	50	62	-	5.2	8.42e-05	1	CTGTTGCGACTGG
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	12	21	+	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	12	21	+	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	12	21	+	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	12	21	+	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	19	28	-	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	49	58	-	10.9016	8.42e-05	0.295	GGTCACGGGA
Arntl	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	87	96	+	10.9016	8.42e-05	0.295	CGTCACGCGA
Arntl	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	94	103	-	10.9016	8.42e-05	0.295	CGTCACGCGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	11	23	+	9.36066	8.42e-05	0.0644	GGCCCGGCGGGGC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	11	23	+	9.36066	8.42e-05	0.0644	GGCCCGGCGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	11	23	+	9.36066	8.42e-05	0.0644	GGCCCGGCGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	11	23	+	9.36066	8.42e-05	0.0644	GGCCCGGCGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	25	+	9.36066	8.42e-05	0.0644	GCCCCGGGGGGGT
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	46	58	-	9.36066	8.42e-05	0.0644	CCCCTTTGAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	84	96	-	9.36066	8.42e-05	0.0644	AGCCGCGAAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	84	96	-	9.36066	8.42e-05	0.0644	AGCCGCGAAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	84	96	-	9.36066	8.42e-05	0.0644	AGCCGCGAAGGCC
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	38	56	+	8.18033	8.42e-05	0.133	GCGCCGCGCGGGGGCGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	38	56	+	8.18033	8.42e-05	0.133	GCGCCGCGCGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	69	87	+	8.18033	8.42e-05	0.133	AAGCCAGCAGTGGTAACCC
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	69	87	+	8.18033	8.42e-05	0.133	AAGCCAGCAGTGGTAACCC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	69	87	+	8.18033	8.42e-05	0.133	AAGCCAGCAGTGGTAACCC
CTCF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	69	87	+	8.18033	8.42e-05	0.133	AAGCCAGCAGTGGTAACCC
KLF14	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	2	15	+	8.2069	8.42e-05	0.0396	TCCCGCGCCCCCGC
KLF14	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	5	18	+	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.0	60	73	+	8.2069	8.42e-05	0.0396	TCCCCCGCCCCCGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.0.0	60	73	+	8.2069	8.42e-05	0.0396	TCCCCCGCCCCCGG
KLF14	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	61	74	-	8.2069	8.42e-05	0.0396	GTCCCCGCCCCATT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	97	110	-	8.2069	8.42e-05	0.0396	AGGCACACCCACAC
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	10	21	-	9.91379	8.42e-05	0.33	ACGCCCACACGT
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	10	21	-	9.91379	8.42e-05	0.33	ACGCCCACACGT
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	10	21	-	9.91379	8.42e-05	0.33	ACGCCCACACGT
GLI2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	16	27	+	9.91379	8.42e-05	0.33	GGGACCACCAAT
Nkx2-5(var.2)	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	83	93	-	11.1636	8.42e-05	0.728	GGCCACTCAGT
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.1.0	29	40	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:93811262..93811376,-__97.1.0.0	29	40	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	FLIPPED__Antisense.flip.antisense__chr1:93811312..93811426,+__2336.1.0.0	25	36	-	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.1.0	79	90	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.0.0	79	90	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	79	90	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	79	90	+	10.2576	8.42e-05	0.109	CAGCTTCCGCCT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	92	103	+	10.2576	8.42e-05	0.109	CGGCGTCCTCCC
CEBPG	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	39	48	+	10.0816	8.42e-05	0.888	ATTACTCAAC
CEBPG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	67	76	-	10.0816	8.42e-05	0.888	ATTACTCAAC
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	67	76	-	10.0816	8.42e-05	0.888	ATTACTCAAC
CEBPG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	67	76	-	10.0816	8.42e-05	0.888	ATTACTCAAC
CEBPG	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	77	86	+	10.0816	8.42e-05	0.888	ATTACTCAAC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	92	104	-	9.80328	8.42e-05	0.0589	AGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	92	104	-	9.80328	8.42e-05	0.0589	AGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	92	104	-	9.80328	8.42e-05	0.0589	AGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	92	104	-	9.80328	8.42e-05	0.0589	AGCCAACAGGGCA
Tcf21	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	11	24	-	5.59211	8.42e-05	0.56	AGGCCAGCTGGCCG
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	91	104	+	5.59211	8.42e-05	0.56	AGGCCAGCTGGCCG
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	91	104	+	5.59211	8.42e-05	0.56	AGGCCAGCTGGCCG
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	91	104	+	5.59211	8.42e-05	0.56	AGGCCAGCTGGCCG
SP2	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	15	29	-	9.91379	8.42e-05	0.0175	TGCCCGCCCTGGGCT
SP2	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	32	46	+	9.91379	8.42e-05	0.0175	CCTCCTCCTCCACCA
SP2	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	21	35	-	9.91379	8.42e-05	0.0175	CCTCCTCCTTCTCCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	52	66	+	9.91379	8.42e-05	0.0175	CCTCCTCCTTCTCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr7:35840191..35840305,-__806.1.0.0	83	97	-	9.91379	8.42e-05	0.0175	GCCGCGCCTCTTTGC
DUX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	31	41	+	10.3191	8.42e-05	1	AGATCCAATCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	42	61	+	2.99083	8.42e-05	0.0725	CCACAAGCCAATAAAAGCCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	26	-	5.65957	8.42e-05	0.105	CGCACCCAGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	26	-	5.65957	8.42e-05	0.105	CGCACCCAGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	37	50	+	5.65957	8.42e-05	0.105	GCATCCCCGCAGTG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	93	106	-	5.65957	8.42e-05	0.105	CAGGCCCCGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	97	110	-	5.65957	8.42e-05	0.105	CACCCCCAGCTGGT
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	97	110	-	5.65957	8.42e-05	0.105	CACCCCCAGCTGGT
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	-	9.60345	8.42e-05	0.249	ATCACATGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	+	9.60345	8.42e-05	0.249	ATCACATGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	+	9.60345	8.42e-05	0.249	ATCACATGAT
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	21	30	-	11.1	8.42e-05	0.878	CCTTTGTCTA
Sox6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	21	30	-	11.1	8.42e-05	0.878	CCTTTGTCTA
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	36	48	+	1.32653	8.42e-05	0.258	CGGGGCTTCCCGG
NFKB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	36	48	+	1.32653	8.42e-05	0.258	CGGGGCTTCCCGG
Arid5a	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	58	71	-	10.8929	8.43e-05	1	AAAATATTAAGAGA
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.0.0	2	12	-	11	8.43e-05	0.292	TTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541671..151541785,-__2113.1.1.0	2	12	-	11	8.43e-05	0.292	TTCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	66	76	+	11	8.43e-05	0.292	TTCTGTGGCTC
RUNX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	66	76	+	11	8.43e-05	0.292	TTCTGTGGCTC
RUNX1	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	87	97	-	11	8.43e-05	0.292	GACTGTGGTCG
GLIS2	WILDTYPE__mrna.flip.sense__chr2:27579833..27579947,-__1180.1.0.0	7	20	-	7.59016	8.43e-05	0.186	GATCCCACGCGGCC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	57	70	-	7.59016	8.43e-05	0.186	CCCCCCATACAAAG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	99	112	-	7.59016	8.43e-05	0.186	TGCCACCCGCAGCC
GLIS2	FLIPPED__mrna.flip.antisense__chr2:27579833..27579947,+__2497.1.0.0	95	108	+	7.59016	8.43e-05	0.186	GATCCCACGCGGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	32	46	-	7.67213	8.43e-05	0.073	CGCCCCGCCCCGCTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	32	46	-	7.67213	8.43e-05	0.073	CGCCCCGCCCCGCTG
NFYA	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	69	86	+	8.60976	8.43e-05	0.224	AAGCTGCTTGTTGGCCGC
NFYA	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	29	46	-	8.60976	8.43e-05	0.224	AAGCTGCTTGTTGGCCGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr1:202780002..202780116,+__42.1.0.0	3	21	+	10.129	8.43e-05	0.153	GCCGGCAGCCGGGCGCGTC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	6	24	+	10.129	8.43e-05	0.153	TTGGGCAGTGGGGTGGGAG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	20	38	+	10.129	8.43e-05	0.153	GACTGCGACGGAGCGCGAC
PAX5	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	46	64	+	10.129	8.43e-05	0.153	CGGCGCGCGCGGGCGGGGC
PAX5	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	85	103	+	10.129	8.43e-05	0.153	GGGCGCGGTGGCGCGTGCC
PAX5	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	51	69	-	10.129	8.43e-05	0.153	CGGCGCGCGCGGGCGGGGC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	17	37	-	8.40323	8.43e-05	0.188	TTTCTTTTTTTCTTTCATATG
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	17	37	-	8.40323	8.43e-05	0.188	TTTCTTTTTTTCTTTCATATG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	64	84	+	8.40323	8.43e-05	0.188	ACTAAGTTTTTTTTTTCCTAC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	69	89	+	8.40323	8.43e-05	0.188	TTTCTTTTTTTCTTTCATATG
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	69	89	+	8.40323	8.43e-05	0.188	TTTCTTTTTTTCTTTCATATG
IRF1	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	56	76	-	8.40323	8.43e-05	0.188	ACTAAGTTTTTTTTTTCCTAC
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	1	17	-	-1.19697	8.43e-05	0.514	AGGGTCGCGGGGCCCGC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	16	28	-	9.25862	8.43e-05	0.0577	TCCCGGAAGGGCT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	20	32	-	9.25862	8.43e-05	0.0577	CGCCGGCCGGGGA
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	87	99	+	9.25862	8.43e-05	0.0577	TCCCGGAAGGGCT
Foxj3	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	51	67	-	10.8442	8.43e-05	1	TGCAAATAAATAATACT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	16	29	-	8.55738	8.43e-05	0.365	ACCCCCTTGGTAAA
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	16	29	-	8.55738	8.43e-05	0.365	ACCCCCTTGGTAAA
EBF1	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	45	58	+	8.55738	8.43e-05	0.365	TTTCCCAAGAGGCA
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	50	63	+	8.55738	8.43e-05	0.365	ACCCCCTTGGTAAA
EBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	50	63	+	8.55738	8.43e-05	0.365	ACCCCCTTGGTAAA
EBF1	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	57	70	-	8.55738	8.43e-05	0.365	TTTCCCAAGAGGCA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	57	67	-	11.1633	8.43e-05	0.199	CGCAGCTGACG
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	57	67	-	11.1633	8.43e-05	0.199	CGCAGCTGACG
Ddit3::Cebpa	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	33	44	+	10.9333	8.43e-05	1	TTGTGAAATCCC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	30	47	+	-15.6974	8.43e-05	0.0547	CACATGAGGGCAGGAAGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	60	77	+	-15.6974	8.43e-05	0.0547	GAAGGGGAGGTGGGAGAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	72	89	+	-15.6974	8.43e-05	0.0547	GGGAGGAGGAGAAGCAGT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	12	29	-	-15.6974	8.43e-05	0.0547	GGAAGAGGGGGAATTAGG
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	16	33	-	-15.6974	8.43e-05	0.0547	CACATGAGGGCAGGAAGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	1	11	+	10.8545	8.43e-05	0.0743	GCTCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	1	11	+	10.8545	8.43e-05	0.0743	GCTCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	19	29	+	10.8545	8.43e-05	0.0743	TCACTTCCTCT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	19	29	+	10.8545	8.43e-05	0.0743	TCACTTCCTCT
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	67	77	+	10.8545	8.43e-05	0.0743	TGCCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	67	77	+	10.8545	8.43e-05	0.0743	TGCCTTCCGGT
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	67	77	+	10.8545	8.43e-05	0.0743	TGCCTTCCGGT
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	84	94	+	10.8545	8.43e-05	0.0743	GCTCTTCCTGC
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	-	11.197	8.43e-05	0.297	CTCACGTGGT
TCF7L2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	35	48	+	10.6909	8.43e-05	1	GACGTTCAAAGAGC
TCF7L2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	35	48	+	10.6909	8.43e-05	1	GACGTTCAAAGAGC
EGR3	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	7	21	+	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	22	36	+	5.67241	8.43e-05	0.0418	ACCCGCCCCCGACCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	22	36	+	5.67241	8.43e-05	0.0418	ACCCGCCCCCGACCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	11	25	-	5.67241	8.43e-05	0.0418	ACCCGCCCCGCCACA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	94	108	-	5.67241	8.43e-05	0.0418	GCACACCCACACCCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	9	19	+	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	27	37	+	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	30	40	+	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	38	48	+	10.9818	8.43e-05	0.0554	CGCCTCCGGGC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	38	48	+	10.9818	8.43e-05	0.0554	CGCCTCCGGGC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	40	50	+	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	40	50	+	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	40	50	+	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	40	50	+	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	46	56	+	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	55	65	+	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	45	55	-	10.9818	8.43e-05	0.0554	CGCCTCCGGGC
TFAP2A	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	50	60	-	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	59	69	-	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	70	80	+	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	75	-	10.9818	8.43e-05	0.0554	CGCCGGAAGCG
TFAP2A	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	75	85	-	10.9818	8.43e-05	0.0554	AGCCGCGGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	95	105	-	10.9818	8.43e-05	0.0554	AGCTCCAGGCA
ERG	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	56	65	+	11.0727	8.43e-05	0.145	AACGGATGTG
ERG	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	59	-	11.0727	8.43e-05	0.145	AACGGATGTG
GCM1	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	14	24	-	10.3878	8.43e-05	0.551	CACGCGGGTGC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	+	10.3846	8.43e-05	0.306	GCCACGTGAT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	+	10.3846	8.43e-05	0.306	GCCACGTGAT
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	-	10.3846	8.43e-05	0.306	GCCACGTGAT
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	93	105	-	9.15714	8.43e-05	0.763	AGCACAGCTGTGC
PAX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	13	-	9.66038	8.43e-05	1	TAATTAATTG
PAX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	13	-	9.66038	8.43e-05	1	TAATTAATTG
PAX3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	48	57	+	9.66038	8.43e-05	1	TAATTAATTG
PAX3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	48	57	+	9.66038	8.43e-05	1	TAATTAATTG
PAX3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	58	67	-	9.66038	8.43e-05	1	TAATTAATTG
Mitf	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	46	55	-	10.5612	8.43e-05	0.281	ACTCACGTGG
MAFG	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	25	45	+	9.35714	8.44e-05	1	ATCATGGTGACTCAGCTCTCT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	+	10.8283	8.44e-05	1	TATTTCCGTT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	+	10.8283	8.44e-05	1	TATTTCCGTT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	-	10.8283	8.44e-05	1	TATTTCCGTT
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	-	10.8283	8.44e-05	1	TATTTCCGTT
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	71	85	-	9.92727	8.44e-05	0.343	GAAAAGGGAGGGTGA
RXRB	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	53	66	+	-0.181818	8.44e-05	0.555	CAGGGCAGGGTTCA
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	7	19	-	7.54545	8.44e-05	0.264	CGGGAAGGCCCCG
NFKB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	7	19	-	7.54545	8.44e-05	0.264	CGGGAAGGCCCCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	82	92	+	10.5455	8.44e-05	0.0718	AGCCTCAAGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	82	92	+	10.5455	8.44e-05	0.0718	AGCCTCAAGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	82	92	+	10.5455	8.44e-05	0.0718	AGCCTCAAGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	82	92	+	10.5455	8.44e-05	0.0718	AGCCTCAAGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	91	101	-	10.5455	8.44e-05	0.0718	ACCCGCAGGCC
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	2	11	-	11.4545	8.44e-05	0.519	GCACGTGCCT
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	2	11	-	11.4545	8.44e-05	0.519	GCACGTGCCT
ETV6	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	2	11	+	10.9038	8.44e-05	0.121	TGCGGAAGTC
ETV6	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	104	113	-	10.9038	8.44e-05	0.121	TGCGGAAGTC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	+	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	+	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	+	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	+	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	+	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	-	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	-	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	-	7.53846	8.44e-05	0.216	GGCACGTGGC
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	-	7.53846	8.44e-05	0.216	GGCACGTGGC
TGIF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	36	47	-	7.6422	8.44e-05	0.855	TGCCATCTGCCA
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	36	47	-	7.6422	8.44e-05	0.855	TGCCATCTGCCA
TGIF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	36	47	-	7.6422	8.44e-05	0.855	TGCCATCTGCCA
TGIF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	36	47	-	7.6422	8.44e-05	0.855	TGCCATCTGCCA
Bcl6	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	22	35	-	10.3548	8.44e-05	0.499	GTGCCTGGAGGGGA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	68	81	-	10.3548	8.44e-05	0.499	GTTCCTGGACTCTA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.1.0	68	81	-	10.3548	8.44e-05	0.499	GTTCCTGGACTCTA
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	68	81	-	10.3548	8.44e-05	0.499	GTTCCTGGACTCTA
Bcl6	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	80	93	+	10.3548	8.44e-05	0.499	GTGCCTGGAGGGGA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	26	36	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	26	36	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	46	56	+	9.45455	8.44e-05	0.0234	GAGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.1.0	46	56	+	9.45455	8.44e-05	0.0234	ACGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	50	60	+	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	50	60	+	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	50	60	+	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	50	60	+	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	59	69	+	9.45455	8.44e-05	0.0234	ACGGCTGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	59	69	+	9.45455	8.44e-05	0.0234	ACGGCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.0.0	59	69	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	59	69	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.1.0	59	69	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	59	69	-	9.45455	8.44e-05	0.0234	GCACGCGCGCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	70	80	-	9.45455	8.44e-05	0.0234	GAGGGGGCGCG
NRF1	WILDTYPE__mrna.noflip.NA__chr1:117113581..117113695,-__1407.1.0.0	77	87	-	9.45455	8.44e-05	0.0234	GCCTCTGCGCG
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	18	26	+	9.93421	8.44e-05	0.215	CTGCCATCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	18	26	+	9.93421	8.44e-05	0.215	CTGCCATCA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	32	40	-	9.93421	8.44e-05	0.215	CTGCCATCA
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	78	86	-	9.93421	8.44e-05	0.215	CTGCCATCA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	78	86	-	9.93421	8.44e-05	0.215	CTGCCATCA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	42	51	-	10.6383	8.44e-05	0.949	GTGTGTGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	42	51	-	10.6383	8.44e-05	0.949	GTGTGTGAAA
TBR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	69	78	+	10.6383	8.44e-05	0.949	GTGTGTGAAA
TBR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	69	78	+	10.6383	8.44e-05	0.949	GTGTGTGAAA
TFE3	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	+	10.8776	8.44e-05	0.161	TCCACGTGAT
POU1F1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	8	21	-	10.1207	8.44e-05	1	ATTGTGAAAATTAG
E2F6	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	32	42	-	10.5	8.45e-05	0.0798	GAGTGGGAGGG
E2F6	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	77	87	-	10.5	8.45e-05	0.0798	GAGTGGGAAGC
E2F6	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	28	38	+	10.5	8.45e-05	0.0798	GAGTGGGAAGC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	73	85	+	10.3443	8.45e-05	0.359	AAGTCTCACACGC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	23	32	-	10.2477	8.45e-05	0.0553	CAACCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	71	80	-	10.2477	8.45e-05	0.0553	CAACCCCCAC
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	18	28	+	9.01724	8.45e-05	0.0862	CCACCTACGTA
EGR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	53	63	-	9.01724	8.45e-05	0.0862	CCACCTACGTA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	87	97	+	9.01724	8.45e-05	0.0862	ACACCCACGTC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	51	70	+	2.98165	8.45e-05	0.0725	CCCCGCCCCCCCCCCCCGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	92	111	+	2.98165	8.45e-05	0.0725	CCTCACCCCAATCCCTACAG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	15	28	+	9.78846	8.45e-05	0.0295	ACTCCTCCTCCTGC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	29	42	-	9.78846	8.45e-05	0.0295	CTCCTTCCCCCAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	29	42	-	9.78846	8.45e-05	0.0295	CTCCTTCCCCCAGC
EGR1	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	33	46	-	9.78846	8.45e-05	0.0295	GCGCCGCCGTCGCA
EGR1	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	69	82	+	9.78846	8.45e-05	0.0295	GCGCCGCCGTCGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	84	97	+	9.78846	8.45e-05	0.0295	CCGCAGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	84	97	+	9.78846	8.45e-05	0.0295	CCGCAGCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	84	97	+	9.78846	8.45e-05	0.0295	CCGCAGCCGCCGCG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	84	97	+	9.78846	8.45e-05	0.0295	CCGCAGCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	84	97	+	9.78846	8.45e-05	0.0295	CCGCAGCCGCCGCG
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	98	110	-	10.3537	8.45e-05	1	CTCTGGCAAGTTC
HSF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	98	110	-	10.3537	8.45e-05	1	CTCTGGCAAGTTC
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.1.0	98	110	-	10.3537	8.45e-05	1	CTCTGGCAAGTTC
NFAT5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	41	50	+	10.7581	8.45e-05	1	TTTTTCCAAT
NFAT5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	41	50	+	10.7581	8.45e-05	1	TTTTTCCAAT
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	63	76	+	7.98485	8.45e-05	0.349	CTCCCACGTCACTC
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	77	90	-	7.98485	8.45e-05	0.349	CTCCCACGTCACTC
SP4	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	25	+	2.98182	8.45e-05	0.0335	TGCCCCCCGCCCCCCAC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	37	53	-	2.98182	8.45e-05	0.0335	TTCACCCCGCGCCCAGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	37	53	-	2.98182	8.45e-05	0.0335	TTCACCCCGCGCCCAGC
SP4	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	66	82	-	2.98182	8.45e-05	0.0335	TTCACCCCGCGCCCAGC
STAT1	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	35	45	-	9.90909	8.45e-05	0.415	TTTCCTGTAAA
Phox2b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	14	24	+	10.8511	8.45e-05	1	TAAGGTAATTA
MAFF	WILDTYPE__Enhancer.noflip.NA__chr11:109958871..109958985,-__2296.1.0.0	2	19	-	10.4667	8.45e-05	0.965	GATTGGTCAGCAGCACAT
Klf1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	2	12	+	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	3	13	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	13	23	+	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	4	14	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	17	27	-	10.3182	8.45e-05	0.0545	AGCCACGCCTT
Klf1	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	29	39	+	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	34	44	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	34	44	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	25	35	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	25	35	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	29	39	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	29	39	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	29	39	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	42	52	+	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	42	52	+	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	49	59	+	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	49	59	+	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	49	59	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	39	49	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	55	65	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	50	60	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	66	76	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	56	66	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	56	66	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	56	66	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	56	66	-	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	62	72	-	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	62	72	-	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	81	91	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	72	82	-	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	72	82	-	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	72	82	-	10.3182	8.45e-05	0.0545	AGCCACGCCTT
Klf1	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	76	86	-	10.3182	8.45e-05	0.0545	CCCCCCGCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	101	111	+	10.3182	8.45e-05	0.0545	GGCCCCTCCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	103	113	-	10.3182	8.45e-05	0.0545	CACAACACCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	103	113	-	10.3182	8.45e-05	0.0545	CACAACACCCA
INSM1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	102	113	-	9.19388	8.45e-05	0.195	TGGCAGCGGTAG
INSM1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	102	113	-	9.19388	8.45e-05	0.195	TGGCAGCGGTAG
INSM1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	2	13	+	9.19388	8.45e-05	0.195	TGGCAGCGGTAG
ELF3	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	2	14	+	7.65517	8.45e-05	0.183	AACCAGGATGTTT
ELF3	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	35	47	+	7.65517	8.45e-05	0.183	CAAAAGGAAGTGA
ELF3	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	68	80	-	7.65517	8.45e-05	0.183	CAAAAGGAAGTGA
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	45	55	-	10.75	8.45e-05	1	ACTGTAAACAT
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	45	55	-	10.75	8.45e-05	1	ACTGTAAACAT
FOXB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	58	68	+	10.75	8.45e-05	1	ACTGTAAACAT
FOXB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	58	68	+	10.75	8.45e-05	1	ACTGTAAACAT
Tcf21	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	11	24	+	5.57895	8.45e-05	0.56	CGGCCAGCTGGCCT
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	91	104	-	5.57895	8.45e-05	0.56	CGGCCAGCTGGCCT
Tcf21	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	91	104	-	5.57895	8.45e-05	0.56	CGGCCAGCTGGCCT
Tcf21	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	91	104	-	5.57895	8.45e-05	0.56	CGGCCAGCTGGCCT
Tcf21	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	92	105	-	5.57895	8.45e-05	0.56	GTTCCAGCTGGCGG
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	92	105	-	5.57895	8.45e-05	0.56	GTTCCAGCTGGCGG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	21	35	-	8.84286	8.45e-05	0.122	CGGGGGCTGGGGTGG
CREB3	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	17	30	-	9.2	8.45e-05	0.308	CTGTGACGTCAGAA
STAT3	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	60	70	+	10.6735	8.45e-05	0.336	CTGCTGAGAAT
Hes1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	-	9.78322	8.45e-05	0.122	CCCACGTGCG
Hes1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	+	9.78322	8.45e-05	0.122	CCCACGTGCG
Hes1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	-	9.78322	8.45e-05	0.122	CCCACGTGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	+	9.78322	8.45e-05	0.122	CCCACGTGCG
MAX	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	-	11.7692	8.45e-05	0.298	AACACGTGAG
MAX	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	11.7692	8.45e-05	0.298	GACACGTGAT
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	+	11.7692	8.45e-05	0.298	AACACGTGAG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	+	11.7692	8.45e-05	0.298	AACACGTGAG
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	+	11.7692	8.45e-05	0.298	AACACGTGAG
MAX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	+	11.7692	8.45e-05	0.298	AACACGTGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr1:156721990..156722104,+__2446.1.0.0	32	41	+	10.9596	8.45e-05	0.182	GTATGGGGGG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	61	70	+	10.9596	8.45e-05	0.182	GTATGGGGGG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr1:156721990..156722104,-__956.1.0.0	74	83	-	10.9596	8.45e-05	0.182	GTATGGGGGG
ZNF263	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	9	29	-	9.18367	8.46e-05	0.0221	AGAGAACCACGTGGAGGAAAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	13	33	-	9.18367	8.46e-05	0.0221	GATGCGGGGGAGGGCGGGGGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	44	64	-	9.18367	8.46e-05	0.0221	GAGGGACTCACGAGGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	44	64	-	9.18367	8.46e-05	0.0221	GAGGGACTCACGAGGGGAAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	49	69	-	9.18367	8.46e-05	0.0221	GATGCGGGGGAGGGCGGGGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	49	69	-	9.18367	8.46e-05	0.0221	GATGCGGGGGAGGGCGGGGGG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	84	104	-	9.18367	8.46e-05	0.0221	GGTGAAAGGGAAGCAAAGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	93	113	-	9.18367	8.46e-05	0.0221	GGAGGCGGAGGCTAGAAAGAC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	93	113	-	9.18367	8.46e-05	0.0221	GGAGGCGGAGGCTAGAAAGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	9	29	+	9.18367	8.46e-05	0.0221	CGGGGGAGGGGAGAGGGAGGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	11	31	+	9.18367	8.46e-05	0.0221	GGTGAAAGGGAAGCAAAGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	31	51	+	9.18367	8.46e-05	0.0221	GAGGGAGGAGAGAACGTGCGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	31	51	+	9.18367	8.46e-05	0.0221	GAGGGAGGAGAGAACGTGCGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	46	66	+	9.18367	8.46e-05	0.0221	GGGGGAGAAGGCGGCGGGCCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	52	72	+	9.18367	8.46e-05	0.0221	GATGCGGGGGAGGGCGGGGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	52	72	+	9.18367	8.46e-05	0.0221	GATGCGGGGGAGGGCGGGGGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	86	106	+	9.18367	8.46e-05	0.0221	AGAGAACCACGTGGAGGAAAA
ETV5	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	4	13	+	11.0182	8.46e-05	0.133	GGCGGATGTA
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	11.0182	8.46e-05	0.133	GACGGAAGTG
ETV5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.1.0	5	14	-	11.0182	8.46e-05	0.133	GGCGGATGTA
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	5	14	-	11.0182	8.46e-05	0.133	GGCGGATGTA
ETV5	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	11.0182	8.46e-05	0.133	GACGGAAGTG
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	8	17	+	11.1951	8.46e-05	0.199	GTCACATGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	8	17	+	11.1951	8.46e-05	0.199	GTCACATGGC
TFEC	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	32	41	+	11.1951	8.46e-05	0.199	GTCACATGCC
SREBF2	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	50	59	+	10.764	8.46e-05	0.871	ATGAGGTGAA
SREBF2	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	56	65	-	10.764	8.46e-05	0.871	ATGAGGTGAA
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	31	48	+	-15.7105	8.46e-05	0.0547	GAAAGACGGGAACGTAGC
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	38	55	+	-15.7105	8.46e-05	0.0547	GGGAGGGAGGGGGAAATC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	38	55	+	-15.7105	8.46e-05	0.0547	GGGAGGACAGCAGAAAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	38	55	+	-15.7105	8.46e-05	0.0547	GGGAGGACAGCAGAAAAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	49	66	+	-15.7105	8.46e-05	0.0547	GAGGGAGGGGGAGGAGGT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	49	66	-	-15.7105	8.46e-05	0.0547	GAGGGAGGGGGAGGAGGT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	60	77	-	-15.7105	8.46e-05	0.0547	GGGAGGGAGGGGGAAATC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	67	84	-	-15.7105	8.46e-05	0.0547	GAAAGACGGGAACGTAGC
REST	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	47	67	-	4.5	8.46e-05	0.236	GCCGGCGCCGCGGTCGGCGGC
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	48	68	+	4.5	8.46e-05	0.236	GCCGGCGCCGCGGTCGGCGGC
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	48	68	+	4.5	8.46e-05	0.236	GCCGGCGCCGCGGTCGGCGGC
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	57	68	-	10.4571	8.46e-05	0.224	CGCGCCCCCCTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	26	38	+	9.34426	8.46e-05	0.0644	TCCCGCGGAGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	26	38	+	9.34426	8.46e-05	0.0644	TCCCGCGGAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	26	38	+	9.34426	8.46e-05	0.0644	TCCCGCGGAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	29	41	-	9.24138	8.46e-05	0.0577	TCCCTGGGAGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	29	41	-	9.24138	8.46e-05	0.0577	TCCCTGGGAGGGA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	92	104	+	9.24138	8.46e-05	0.0577	CCCCCGCCGGGGC
GLIS3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	54	67	+	2.98485	8.46e-05	0.379	TCCCTCCCGCGAGG
GLIS3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	54	67	+	2.98485	8.46e-05	0.379	TCCCTCCCGCGAGG
GLIS3	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	48	61	-	2.98485	8.46e-05	0.379	TCCCTCCCGCGAGG
Stat6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	95	109	-	10.3966	8.46e-05	0.834	GAATTACTGGGAAAC
Stat6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	95	109	-	10.3966	8.46e-05	0.834	GAATTACTGGGAAAC
Nr1h3::Rxra	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	70	88	-	10.2258	8.46e-05	0.674	TGACTTTAAATGACTCATT
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr15:52580673..52580787,-__2161.1.0.0	83	101	-	10.2258	8.46e-05	0.674	TGGCATTGAGTGCCCTGCA
Nr1h3::Rxra	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	14	32	+	10.2258	8.46e-05	0.674	TGTTCTGAGATTACCTCAT
Nr1h3::Rxra	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	27	45	+	10.2258	8.46e-05	0.674	TGACTTTAAATGACTCATT
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	1	15	+	7.51429	8.46e-05	0.123	CCGCCCCCGCTGCGT
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	1	15	+	7.51429	8.46e-05	0.123	CCGCCCCCGCTGCGT
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:42128029..42128143,-__2036.1.0.0	30	44	-	7.51429	8.46e-05	0.123	GACCACCCACTTCTT
ZIC3	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	36	50	-	7.51429	8.46e-05	0.123	TCCACCCCGCCGCCC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr1:42128038..42128152,+__1743.1.0.0	62	76	+	7.51429	8.46e-05	0.123	GACCACCCACTTCTT
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	76	87	+	-0.634615	8.47e-05	0.932	TTACAGACGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	76	87	+	-0.634615	8.47e-05	0.932	TTACAGACGTCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	76	87	+	-0.634615	8.47e-05	0.932	TTACAGACGTCA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	76	87	+	-0.634615	8.47e-05	0.932	TTACAGACGTCA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	61	73	+	9.78689	8.47e-05	0.0589	GGCCCGCGTGGCG
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	22	34	-	9.78689	8.47e-05	0.0589	GGCCTTGTGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	42	54	-	9.78689	8.47e-05	0.0589	GGCCCGCGTGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr16:1464670..1464784,-__1346.1.0.0	14	25	-	10.8469	8.47e-05	0.0876	CCCCCGCGGCCA
NFYA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	5	22	-	8.59756	8.47e-05	0.224	CGCCTGCTGATTCGCTTG
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	5	22	-	8.59756	8.47e-05	0.224	CGCCTGCTGATTCGCTTG
SP1	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	7	17	-	10.3654	8.47e-05	0.0198	TTCCCACCCCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	32	47	+	9.83636	8.47e-05	0.0416	CCCCGCACCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	32	47	+	9.83636	8.47e-05	0.0416	CCCCGCACCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	32	47	+	9.83636	8.47e-05	0.0416	CCCCGCACCCGCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	32	47	+	9.83636	8.47e-05	0.0416	CCCCGCACCCGCCCCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	28	43	-	9.83636	8.47e-05	0.0416	CCCCTCCCACCCCGCC
EGR4	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	50	65	+	9.83636	8.47e-05	0.0416	GCAGGCCCCCGCCCCG
EGR4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	58	73	+	9.83636	8.47e-05	0.0416	CTGCGCCCACCCCGCC
EGR4	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	99	114	-	9.83636	8.47e-05	0.0416	CGCCGCCGCCGCCATC
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	15	28	-	-0.0454545	8.47e-05	0.252	TTGTGACATCAGTA
RARA	WILDTYPE__Antisense.noflip.NA__chr1:44172974..44173088,-__79.1.0.0	70	87	+	-10.6515	8.47e-05	1	GGGGCGAGAGGTTCGCGC
RARA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.0.0	74	91	+	-10.6515	8.47e-05	1	ACGGCCAGAAGTCCAGGG
RARA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:94657045..94657159,+__596.1.1.0	74	91	+	-10.6515	8.47e-05	1	ACGGCCAGAAGTCCAGGG
RARA	WILDTYPE__Antisense.noflip.NA__chr1:44173001..44173115,-__80.1.0.0	97	114	+	-10.6515	8.47e-05	1	GGGGCGAGAGGTTCGCGC
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.0.0	25	37	-	10.4921	8.47e-05	0.577	CCTCCGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	75	87	+	10.4921	8.47e-05	0.577	TGGGCACACGTGG
Hes2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	75	87	+	10.4921	8.47e-05	0.577	TGGGCACACGTGG
Hes2	FLIPPED__Enhancer.flip.antisense__chr13:70523606..70523720,-__2854.1.0.0	78	90	+	10.4921	8.47e-05	0.577	CCTCCGCACGTGA
Hes2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.1.0	93	105	-	10.4921	8.47e-05	0.577	CCTAGGCACGTAC
Hes2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:25643882..25643996,+__1721.1.0.0	93	105	-	10.4921	8.47e-05	0.577	CCTAGGCACGTAC
NFKB1	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	8	20	-	1.30612	8.47e-05	0.258	CGGGAATTCCACC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	67	79	+	1.30612	8.47e-05	0.258	CAGGGATTTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	59	71	-	1.30612	8.47e-05	0.258	CGGGAATTCCACC
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	59	71	-	1.30612	8.47e-05	0.258	CGGGAATTCCACC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	68	80	-	1.30612	8.47e-05	0.258	CAGGGATTTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	98	110	-	1.30612	8.47e-05	0.258	CGGGAATTCCACC
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	98	110	-	1.30612	8.47e-05	0.258	CGGGAATTCCACC
ELK3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	49	58	+	10.8793	8.47e-05	0.126	GGCGGAAGTT
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	49	58	+	10.8793	8.47e-05	0.126	GGCGGAAGTT
ELK3	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	68	77	+	10.8793	8.47e-05	0.126	GGCGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	38	47	-	10.8793	8.47e-05	0.126	GGCGGAAGTT
ELK3	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	57	66	-	10.8793	8.47e-05	0.126	GGCGGAAGTT
TFAP2B	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	40	51	+	10.8727	8.47e-05	0.0926	TCCCCTCCGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	55	66	+	10.8727	8.47e-05	0.0926	TGCCCTGGGCCC
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	63	74	+	10.8727	8.47e-05	0.0926	TCCCCTCCGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	29	40	-	10.8727	8.47e-05	0.0926	CACCTGAGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	29	40	-	10.8727	8.47e-05	0.0926	CACCTGAGGGCG
TFAP2B	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	52	-	10.8727	8.47e-05	0.0926	TCCCCTCCGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	75	-	10.8727	8.47e-05	0.0926	TCCCCTCCGGCG
Sox3	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	81	90	+	11.2069	8.47e-05	0.659	TCTTTGTCTG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	23	32	+	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	41	50	+	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	34	43	-	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	37	46	-	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	50	59	+	10.2857	8.47e-05	0.0281	GGGGCGGGTT
Klf4	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	56	65	+	10.2857	8.47e-05	0.0281	GGGGCGGGTT
Klf4	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	56	65	-	10.2857	8.47e-05	0.0281	GGGGCGGGTT
Klf4	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	69	78	+	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	72	81	+	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	65	74	-	10.2857	8.47e-05	0.0281	TGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	80	89	+	10.2857	8.47e-05	0.0281	TGGGTGTGTT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	80	89	+	10.2857	8.47e-05	0.0281	TGGGTGTGTT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	22	35	+	8.18966	8.47e-05	0.0398	CACCCCCCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	22	35	+	8.18966	8.47e-05	0.0398	CACCCCCCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	9	22	-	8.18966	8.47e-05	0.0398	CACCCCCCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	9	22	-	8.18966	8.47e-05	0.0398	CACCCCCCCCCCCC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	27	40	+	8.18966	8.47e-05	0.0398	CACCCCCCCCCCCC
Pou5f1::Sox2	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	44	58	+	10.0403	8.47e-05	1	TTTGATTATGTAGAT
TCF4	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	30	39	-	11.5102	8.47e-05	0.422	ACCACCTGCT
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	90	-	11.5102	8.47e-05	0.422	ACCACCTGCT
TCF4	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	72	81	+	11.5102	8.47e-05	0.422	ACCACCTGCT
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.0	80	93	-	8.08065	8.47e-05	0.783	CTGAAAGTGAACGC
IRF7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:8021691..8021805,+__1436.1.2.1	80	93	-	8.08065	8.47e-05	0.783	CTGAAAGTGAACGC
INSM1	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	88	99	-	9.18367	8.47e-05	0.195	AGCAAGCGGGCG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	23	36	+	10.2424	8.48e-05	0.0672	GTTGCTAGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	23	36	+	10.2424	8.48e-05	0.0672	GTTGCTAGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	13	26	-	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	13	26	-	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	40	53	-	10.2424	8.48e-05	0.0672	ATATCCTGGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	44	57	-	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	58	71	+	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	58	71	+	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
Zfx	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	89	102	+	10.2424	8.48e-05	0.0672	GCCGCTGCAGCCTC
SP8	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	27	38	-	10.4474	8.48e-05	0.0376	CCCACACCCGCC
SP8	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	43	54	-	10.4474	8.48e-05	0.0376	CCCACACCCGCC
SP8	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	61	72	+	10.4474	8.48e-05	0.0376	CCCACACCCGCC
SP8	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	77	88	+	10.4474	8.48e-05	0.0376	CCCACACCCGCC
E2F4	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	28	38	-	10.2931	8.48e-05	0.0512	AGGCGGGGAAA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	4	18	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	5	19	-	5.65517	8.48e-05	0.0418	CACCTCCTCCGCCCC
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	18	32	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	22	36	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	24	38	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	30	44	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	44	58	+	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	44	58	+	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	36	50	-	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
EGR3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	79	93	+	5.65517	8.48e-05	0.0418	CCCCACCCCCACCCC
TBX20	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	62	72	-	10.303	8.48e-05	1	GTGGTGTGAAT
TBX20	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	62	72	-	10.303	8.48e-05	1	GTGGTGTGAAT
Mafb	WILDTYPE__Antisense.noflip.NA__chr1:16162267..16162381,-__27.1.0.0	63	74	+	10.9663	8.48e-05	0.865	TTTTTGCTGAGT
CTCF	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	45	63	+	8.16393	8.48e-05	0.133	CTGTCTCAAGGGGCCGCTC
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	41	59	-	8.16393	8.48e-05	0.133	GGGCCTCAAGGGTGAGGCC
CTCF	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	52	70	-	8.16393	8.48e-05	0.133	CTGTCTCAAGGGGCCGCTC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	36	49	+	7.57377	8.48e-05	0.186	GCCCTCCCACAAGC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	19	33	+	7.65574	8.48e-05	0.0731	GACCACCCCCCCCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	19	33	+	7.65574	8.48e-05	0.0731	GACCACCCCCCCCCC
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	93	103	+	10.7759	8.48e-05	0.597	CAATCTAAGCA
TBP	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	52	66	+	10.8472	8.48e-05	0.691	GTATAAATATGACAG
TBP	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	64	78	-	10.8472	8.48e-05	0.691	CTATAAAAATGAAAG
YY2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	60	70	+	10.7879	8.48e-05	0.411	GGGCGCCATTG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	60	70	+	10.7879	8.48e-05	0.411	GGGCGCCATTG
YY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	60	70	+	10.7879	8.48e-05	0.411	GGGCGCCATTG
YY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	60	70	+	10.7879	8.48e-05	0.411	GGGCGCCATTG
HINFP	WILDTYPE__Antisense.flip.sense__chr5:147763427..147763541,-__663.1.0.0	23	34	+	10.2424	8.48e-05	0.109	CCGCTTCCGCCG
HINFP	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	32	43	+	10.2424	8.48e-05	0.109	CACCGTCCCCAC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	72	83	-	10.2424	8.48e-05	0.109	CACCGTCCCCAC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	72	83	-	10.2424	8.48e-05	0.109	CACCGTCCCCAC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	72	83	-	10.2424	8.48e-05	0.109	CACCGTCCCCAC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	72	83	-	10.2424	8.48e-05	0.109	CACCGTCCCCAC
HINFP	FLIPPED__Antisense.flip.antisense__chr5:147763427..147763541,+__2406.1.0.0	81	92	-	10.2424	8.48e-05	0.109	CCGCTTCCGCCG
GLI2	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	9	20	+	9.89655	8.48e-05	0.33	ACGCCCACCCCA
IRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	41	61	-	8.3871	8.48e-05	0.188	AGCTTTTTTCACTTCCCTCCT
IRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	41	61	-	8.3871	8.48e-05	0.188	AGCTTTTTTCACTTCCCTCCT
TGIF2	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	46	-	7.62385	8.48e-05	0.855	GGGCAGCTGCCA
IRF9	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	79	93	+	-3.61818	8.48e-05	0.734	GGTGAAACTGCAAGT
IRF9	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	79	93	+	-3.61818	8.48e-05	0.734	GGTGAAACTGCAAGT
SP2	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	16	30	-	9.89655	8.48e-05	0.0176	CCTCCGCCCTGCGCT
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	72	86	+	9.90909	8.48e-05	0.112	CACTCCCTACAGTGA
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	82	96	+	9.90909	8.48e-05	0.112	TCCCTCCCGCCGGCC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	82	96	+	9.90909	8.48e-05	0.112	TCCCTCCCGCCGGCC
EBF1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	39	52	-	8.54098	8.48e-05	0.365	AGTGCCCTGGGAGT
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	63	76	+	8.54098	8.48e-05	0.365	AGTGCCCTGGGAGT
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	57	68	-	9.7541	8.48e-05	0.144	GCCACGGAAGTG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.1.0	57	68	-	9.7541	8.48e-05	0.144	GCCACGGAAGTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	100	111	-	9.7541	8.48e-05	0.144	AGCGCGGAAGCA
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	100	111	-	9.7541	8.48e-05	0.144	AGCGCGGAAGCA
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	85	98	-	5.6383	8.49e-05	0.105	GCCCCCACATGGCG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	37	46	-	9.58621	8.49e-05	0.249	GACACGCGAC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	95	104	-	9.58621	8.49e-05	0.249	GACACGCGAC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	95	104	-	9.58621	8.49e-05	0.249	GACACGCGAC
Srebf1(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	11	20	+	9.58621	8.49e-05	0.249	GACACGCGAC
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	50	61	-	8.33871	8.49e-05	1	GCTTTAAATAAA
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	50	61	-	8.33871	8.49e-05	1	GCTTTAAATAAA
Nfe2l2	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	85	99	+	9.25758	8.49e-05	0.368	CTGTGTGACTCAGGG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:47572092..47572206,-__437.1.1.0	43	56	-	2	8.49e-05	0.255	AAAAAAAGGAACAG
SP4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	46	62	+	2.96364	8.49e-05	0.0335	TATGCCCCTCCTCTTAA
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	46	62	+	2.96364	8.49e-05	0.0335	TATGCCCCTCCTCTTAA
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	60	76	+	2.96364	8.49e-05	0.0335	CTGGATCCGCCCCGAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	60	76	+	2.96364	8.49e-05	0.0335	CTGGATCCGCCCCGAGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	49	65	-	2.96364	8.49e-05	0.0335	CTGGATCCGCCCCGAGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	49	65	-	2.96364	8.49e-05	0.0335	CTGGATCCGCCCCGAGC
SP4	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	53	69	-	2.96364	8.49e-05	0.0335	TATGCCCCTCCTCTTAA
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	9	18	-	9.76596	8.49e-05	0.108	CCCGGAAATG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	9	18	-	9.76596	8.49e-05	0.108	CCCGGAAATG
ELK1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	40	49	-	9.76596	8.49e-05	0.108	GCCGGAAGGC
ELK1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	40	49	-	9.76596	8.49e-05	0.108	GCCGGAAGGC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	28	39	-	10.8548	8.49e-05	0.281	ACCCCCACCGCC
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	34	44	+	11.0612	8.49e-05	0.4	ACTTCCCGGTA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	34	44	+	11.0612	8.49e-05	0.4	ACTTCCCGGTA
Stat5a::Stat5b	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	64	74	+	11.0612	8.49e-05	0.4	CTTCCCAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.0.0	65	75	+	11.0612	8.49e-05	0.4	CTTCCCAGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:106355851..106355965,+__279.1.1.0	65	75	+	11.0612	8.49e-05	0.4	CTTCCCAGGAA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:207996013..207996127,-__46.1.0.0	9	20	+	10.9091	8.49e-05	0.0579	TGGCTCAGGGCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	17	28	+	10.9091	8.49e-05	0.0579	CCCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	6	17	-	10.9091	8.49e-05	0.0579	CGCCGCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	6	17	-	10.9091	8.49e-05	0.0579	CGCCGCAGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	6	17	-	10.9091	8.49e-05	0.0579	CGCCGCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	6	17	-	10.9091	8.49e-05	0.0579	CGCCGCAGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	11	22	-	10.9091	8.49e-05	0.0579	CCCCCGCGGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	27	38	+	10.9091	8.49e-05	0.0579	GCCCCGAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	27	38	+	10.9091	8.49e-05	0.0579	GCCCCGAGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	27	38	+	10.9091	8.49e-05	0.0579	GCCCCGAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	27	38	+	10.9091	8.49e-05	0.0579	GCCCCGAGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	27	38	+	10.9091	8.49e-05	0.0579	GCCCCGAGGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	101	112	-	10.9091	8.49e-05	0.0579	ACCCCACAGGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	9	19	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	9	19	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	9	19	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	9	19	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	37	47	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	37	47	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	37	47	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	37	47	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	37	47	+	9.43636	8.49e-05	0.0234	GCGGCGGTGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	20	30	+	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	20	30	+	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	60	70	+	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	97	107	+	10.5273	8.49e-05	0.0718	AGCCCTCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	97	107	+	10.5273	8.49e-05	0.0718	AGCCCTCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	97	107	+	10.5273	8.49e-05	0.0718	AGCCCTCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	97	107	+	10.5273	8.49e-05	0.0718	AGCCCTCGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	55	-	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	101	-	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	101	-	10.5273	8.49e-05	0.0718	GGCCCCGGGCG
HIC2	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	56	64	-	10.7636	8.49e-05	0.424	GTGCCCCCT
HIC2	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	56	64	-	10.7636	8.49e-05	0.424	GTGCCCCCT
RREB1	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	7	26	-	2.9633	8.49e-05	0.0728	CCCCGACCCACCCCTTCCTC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	14	33	-	2.9633	8.49e-05	0.0728	CCCCCCCCGCCCCGCCCCAG
Gabpa	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	8	18	+	10.4262	8.49e-05	0.0764	CAGGAAGTTGG
Gabpa	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	21	31	-	10.4262	8.49e-05	0.0764	CCGGAAATAAA
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	44	54	+	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	46	56	-	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	59	69	+	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	62	72	+	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	61	71	-	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	92	102	-	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	92	102	-	10.4262	8.49e-05	0.0764	CAGGAAGTTCC
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.1.0	30	39	+	11.5281	8.49e-05	0.973	TAGGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:26678049..26678163,-__2035.1.0.0	30	39	+	11.5281	8.49e-05	0.973	TAGGAGGTCA
RORA	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	34	43	-	11.5281	8.49e-05	0.973	ATCCGGGTCA
RORA	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	72	81	+	11.5281	8.49e-05	0.973	ATCCGGGTCA
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	21	31	-	10.9636	8.49e-05	0.0554	CGCTCCAGGCT
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	34	44	+	10.9636	8.49e-05	0.0554	CGCTCCAGGCT
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	84	94	+	10.9636	8.49e-05	0.0554	CGCTCCAGGCT
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	30	46	-	4.78182	8.5e-05	0.619	CGCCCCGCCCCGCTGCG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	30	46	-	4.78182	8.5e-05	0.619	CGCCCCGCCCCGCTGCG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	7	21	-	8.82857	8.5e-05	0.122	CGGGGGGGGGGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	7	21	-	8.82857	8.5e-05	0.122	CGGGGGGGGGGGGGG
NR2C2	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	13	27	-	8.82857	8.5e-05	0.122	GAGGGGCGGAGGGAG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	30	44	-	8.82857	8.5e-05	0.122	CGGGGGGGGGGGGGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	30	44	-	8.82857	8.5e-05	0.122	CGGGGGGGGGGGGGG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	42	56	-	8.82857	8.5e-05	0.122	GGAGGGCAAGGAGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	42	56	-	8.82857	8.5e-05	0.122	GGAGGGCAAGGAGGA
NR2C2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	94	108	+	8.82857	8.5e-05	0.122	CGGGGGGGGGGGGGG
NFIX	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	11	19	+	10.2553	8.5e-05	0.758	CGTGCCAGG
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	62	70	+	10.2553	8.5e-05	0.758	CGTGCCAGG
NFIX	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	105	113	+	10.2553	8.5e-05	0.758	CGTGCCAGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	12	24	-	9.32787	8.5e-05	0.0644	CCCCCCCGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	42	54	+	9.32787	8.5e-05	0.0644	AGCCCTGCTGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	42	54	+	9.32787	8.5e-05	0.0644	AGCCCTGCTGGCT
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	42	54	+	9.32787	8.5e-05	0.0644	AGCCCTGCTGGCT
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	43	55	+	9.32787	8.5e-05	0.0644	AGCCCCGCTGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	94	106	-	9.32787	8.5e-05	0.0644	GGCCGCGCGGGCT
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	97	109	-	9.32787	8.5e-05	0.0644	TGCCGCAGAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.1.0	101	113	-	9.32787	8.5e-05	0.0644	TCCCGCCCGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.1	101	113	-	9.32787	8.5e-05	0.0644	TCCCGCCCGGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.0.0	101	113	-	9.32787	8.5e-05	0.0644	TCCCGCCCGGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:26415852..26415966,-__797.1.2.0	101	113	-	9.32787	8.5e-05	0.0644	TCCCGCCCGGGCC
HOXB13	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	21	30	+	11.0182	8.5e-05	1	ACCATAAAAC
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr19:4769065..4769179,+__384.1.0.0	47	56	+	11.0182	8.5e-05	1	CCTATAAAAG
HOXB13	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	79	88	-	11.0182	8.5e-05	1	GCAATAAACA
Spz1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	47	57	-	10.8636	8.5e-05	0.77	AGGGATACAGA
Spz1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	47	57	-	10.8636	8.5e-05	0.77	AGGGATACAGA
SCRT1	WILDTYPE__Enhancer.noflip.NA__chr6:113952562..113952676,+__2017.1.0.0	57	71	-	6.4918	8.5e-05	1	ACTCAACAGTTAGTT
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	25	40	-	-10.6346	8.5e-05	0.329	AGACCGCCCTGGTTGG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	25	40	-	-10.6346	8.5e-05	0.329	AGACCGCCCTGGTTGG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	25	40	-	-10.6346	8.5e-05	0.329	AGACCGCCCTGGTTGG
GLIS1	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	49	64	-	-10.6346	8.5e-05	0.329	AGACCGCCCTGGTTGG
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	29	38	+	10.7869	8.5e-05	0.905	GTAACTGACT
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	29	38	+	10.7869	8.5e-05	0.905	GTAACTGACT
Myb	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	33	42	-	10.7869	8.5e-05	0.905	GTAACTGACT
Myb	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	33	42	-	10.7869	8.5e-05	0.905	GTAACTGACT
ZNF410	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	1	17	-	-4.09091	8.5e-05	1	AGCAACCCATAAAGCCG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	97	107	-	11.1429	8.51e-05	0.2	CACAGCTGTTA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	97	107	-	11.1429	8.51e-05	0.2	CACAGCTGTTA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	28	41	-	4.86735	8.51e-05	0.0756	GGGAGGGAGGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	92	105	-	4.86735	8.51e-05	0.0756	GTGGGAGAGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	92	105	-	4.86735	8.51e-05	0.0756	GTGGGAGAGGGGGG
ELF3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	46	58	+	7.63793	8.51e-05	0.183	CTGCCGGAAGCGG
ELF3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	57	69	-	7.63793	8.51e-05	0.183	CTGCCGGAAGCGG
NFYA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	5	22	-	8.58537	8.51e-05	0.224	AGTCCGACCATTGGCGGA
NFYA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	5	22	-	8.58537	8.51e-05	0.224	AGTCCGACCATTGGCGGA
JDP2(var.2)	WILDTYPE__mrna.flip.sense__chr11:85780867..85780981,-__992.1.0.0	14	25	-	5.95918	8.51e-05	0.251	GATGATGTCAAC
JDP2(var.2)	FLIPPED__mrna.flip.antisense__chr11:85780867..85780981,+__2449.1.0.0	90	101	+	5.95918	8.51e-05	0.251	GATGATGTCAAC
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.1.0	13	21	+	10.8427	8.51e-05	0.315	GAGACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604643..25604757,+__465.1.0.0	13	21	+	10.8427	8.51e-05	0.315	GAGACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	52	60	+	10.8427	8.51e-05	0.315	GAGACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	52	60	+	10.8427	8.51e-05	0.315	GAGACGTGG
TCF7L2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.1.0	16	29	-	10.6727	8.51e-05	1	GGGGTTCAAAGCTC
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	85	96	+	10.4382	8.51e-05	1	CAGCCATCTGCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	85	96	+	10.4382	8.51e-05	1	CAGCCATCTGCT
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	49	60	+	10.7952	8.51e-05	1	TTATGTAGATTT
T	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	5	20	+	7.26923	8.51e-05	1	GCGCACGCGCGTGCGA
T	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.0.0	51	66	+	7.26923	8.51e-05	1	TAGCAGAGGTGTGCGA
T	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.1.0	51	66	+	7.26923	8.51e-05	1	TAGCAGAGGTGTGCGA
T	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	95	110	-	7.26923	8.51e-05	1	GCGCACGCGCGTGCGA
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr14:107252984..107253098,-__2053.1.0.0	27	41	+	9.90909	8.51e-05	0.343	AGTGGGTGAAAGGGC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	85	99	-	9.90909	8.51e-05	0.343	GGACGAGGAAAGTGC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	85	99	-	9.90909	8.51e-05	0.343	GGACGAGGAAAGTGC
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	85	99	-	9.90909	8.51e-05	0.343	GGACGAGGAAAGTGC
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	20	32	+	10.8163	8.51e-05	0.531	CTGAGGTCATCGC
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	56	68	+	10.8163	8.51e-05	0.531	CTGAGGTCATCGC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	47	64	+	-15.7368	8.51e-05	0.0547	GGAGGGAGAGGAAGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	55	72	+	-15.7368	8.51e-05	0.0547	GGAGGGAGAGGAAGAGGA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	59	76	+	-15.7368	8.51e-05	0.0547	GGAGGGGAGGGGAGAATC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	43	60	-	-15.7368	8.51e-05	0.0547	GGAGGGAGAGGAAGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	51	68	-	-15.7368	8.51e-05	0.0547	GGAGGGAGAGGAAGAGGA
ZIC3	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	24	38	+	7.5	8.51e-05	0.123	GCCCTCCTGCAGCCA
ZIC3	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	77	91	-	7.5	8.51e-05	0.123	GCCCTCCTGCAGCCA
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.1	25	39	+	9.67241	8.51e-05	0.506	TTGCTCAAAGCCACC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.1.0	25	39	+	9.67241	8.51e-05	0.506	TTGCTCAAAGCCACC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790766..73790880,-__2230.1.0.0	25	39	+	9.67241	8.51e-05	0.506	TTGCTCAAAGCCACC
Nr5a2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.0.0	42	56	-	9.67241	8.51e-05	0.506	TTGCTCAAAGCCACC
Nr5a2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73790800..73790914,+__1937.1.1.0	42	56	-	9.67241	8.51e-05	0.506	TTGCTCAAAGCCACC
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	25	34	-	7.51923	8.51e-05	0.216	GTCACGAGAG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	25	34	-	7.51923	8.51e-05	0.216	GTCACGAGAG
SREBF2(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	24	33	+	9.07273	8.52e-05	0.266	GTCACCCGAT
SREBF2(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	82	91	-	9.07273	8.52e-05	0.266	GTCACCCGAT
SREBF2	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	6	15	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	11	20	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	11	20	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	38	47	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	38	47	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	38	47	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	91	100	+	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	15	24	-	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	17	26	-	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	17	26	-	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	35	44	-	10.7191	8.52e-05	0.871	GTGGGCTGAG
SREBF2	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	100	109	-	10.7191	8.52e-05	0.871	GTGGGCTGAG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	+	9.77049	8.52e-05	0.0589	AGCCCGCGAGGGC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	19	31	+	9.77049	8.52e-05	0.0589	GGCCACTAGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	19	31	+	9.77049	8.52e-05	0.0589	GGCCACTAGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	19	31	+	9.77049	8.52e-05	0.0589	GGCCACTAGGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	+	9.77049	8.52e-05	0.0589	GCCCTCGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	+	9.77049	8.52e-05	0.0589	GCCCTCGCGGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	27	-	9.77049	8.52e-05	0.0589	GCCCCCCGCGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	31	-	9.77049	8.52e-05	0.0589	GCCCTCGCGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	73	85	-	9.77049	8.52e-05	0.0589	TGCCGCAGTGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	73	85	-	9.77049	8.52e-05	0.0589	TGCCGCAGTGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	84	96	-	9.77049	8.52e-05	0.0589	AGCCCGCGAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	84	96	-	9.77049	8.52e-05	0.0589	AGCCCGCGAGGGC
ZEB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.1	73	81	+	11.0727	8.52e-05	0.479	GCATACCTG
ZEB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:36731622..36731736,-__2219.1.2.0	73	81	+	11.0727	8.52e-05	0.479	GCATACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.1.0	89	97	+	11.0727	8.52e-05	0.479	GCATACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:94047029..94047143,+__1680.1.0.0	89	97	+	11.0727	8.52e-05	0.479	GCATACCTG
ZEB1	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	32	40	-	11.0727	8.52e-05	0.479	GCATACCTG
ZEB1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	72	80	-	11.0727	8.52e-05	0.479	GCATACCTG
Rxra	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	28	41	-	2.2561	8.52e-05	0.51	GGGTTCAAAGTAGA
Rxra	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	44	57	+	2.2561	8.52e-05	0.51	GGGTTCAAAGTAGA
Rxra	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	53	66	+	2.2561	8.52e-05	0.51	CAGGGCAGGGTTCA
Rxra	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	74	87	+	2.2561	8.52e-05	0.51	GGGTTCAAAGTAGA
CENPB	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	10	24	+	9.98077	8.52e-05	0.937	CCCACCTCCGACGCA
CENPB	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	9	23	-	9.98077	8.52e-05	0.937	CCCACCTCCGACGCA
CENPB	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	92	106	+	9.98077	8.52e-05	0.937	CCCACCTCCGACGCA
CENPB	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	91	105	-	9.98077	8.52e-05	0.937	CCCACCTCCGACGCA
EGR1	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	9	22	+	9.76923	8.52e-05	0.0296	GCCTCTCCGCCGCG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.0	19	32	-	9.76923	8.52e-05	0.0296	CGTCTGCCCACGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:128283978..128284092,-__1053.1.2.1	19	32	-	9.76923	8.52e-05	0.0296	CGTCTGCCCACGGC
EGR1	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	34	47	+	9.76923	8.52e-05	0.0296	CTCCCACCCTCGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128284030..128284144,-__1547.1.1.0	71	84	-	9.76923	8.52e-05	0.0296	CGTCTGCCCACGGC
EGR1	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	93	106	-	9.76923	8.52e-05	0.0296	GCCTCTCCGCCGCG
ZBTB18	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	10	22	+	9.12857	8.52e-05	0.763	CGGACAGGTGTGG
ZBTB18	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	27	39	+	9.12857	8.52e-05	0.763	GAAACAGCTGTGC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	5	14	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	6	15	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	6	15	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	7	16	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	8	17	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	8	17	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	10	19	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	4	13	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	15	24	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	7	16	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	18	27	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	19	28	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	19	28	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	10	19	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	19	28	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	19	28	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	19	28	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	10	19	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	11	20	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	21	30	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	21	30	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	21	30	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	26	35	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	27	36	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	29	38	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	29	38	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	31	40	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	31	40	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	31	40	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	25	34	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	25	34	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	26	35	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	28	37	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	28	37	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	28	37	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	29	38	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	29	38	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	29	38	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	29	38	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	29	38	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	31	40	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	40	49	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	33	42	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	33	42	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	42	51	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	42	51	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	43	52	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	44	53	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	45	54	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	45	54	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	45	54	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	45	54	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	46	55	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	38	47	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	49	58	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	41	50	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	41	50	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	51	60	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	42	51	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	51	60	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	44	53	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	44	53	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	54	63	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	54	63	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	54	63	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	54	63	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	55	64	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	55	64	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	55	64	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	55	64	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	56	65	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	56	65	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	50	59	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	59	68	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	59	68	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	51	60	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	51	60	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	54	63	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	63	72	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	55	64	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	56	65	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	56	65	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	57	66	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	68	77	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	68	77	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	68	77	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	60	69	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	70	79	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	70	79	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	71	80	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	62	71	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	72	81	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	64	73	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	73	82	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	66	75	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	81	90	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	83	92	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	83	92	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	75	84	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	87	96	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	79	88	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	95	104	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	96	105	+	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	88	97	-	10.2385	8.52e-05	0.0553	CGCCCCCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	98	107	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	98	107	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	99	108	+	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	98	107	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	99	108	-	10.2385	8.52e-05	0.0553	CCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	10	20	+	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	10	20	+	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	13	23	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	17	27	-	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	28	38	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	31	41	+	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	27	37	-	10.0517	8.52e-05	0.0257	CCCCAGCCCAC
KLF16	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	29	39	-	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	34	44	-	10.0517	8.52e-05	0.0257	GCCGCGCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	34	44	-	10.0517	8.52e-05	0.0257	GCCGCGCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	45	55	+	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	57	67	-	10.0517	8.52e-05	0.0257	GCCGCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	60	70	-	10.0517	8.52e-05	0.0257	TCCCCGCCCTC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	72	82	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	62	72	-	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	78	88	+	10.0517	8.52e-05	0.0257	CCCCAGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	96	106	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	96	106	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	96	106	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	96	106	+	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	92	102	-	10.0517	8.52e-05	0.0257	ACCCCTCCTCC
MAFG	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	55	75	+	9.33673	8.52e-05	1	TACGCGCTGACGCCGCGTCAC
MAFG	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	40	60	-	9.33673	8.52e-05	1	TACGCGCTGACGCCGCGTCAC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	35	44	+	10.2653	8.52e-05	0.0282	TGGGAGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	35	44	-	10.2653	8.52e-05	0.0282	TGGGAGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	66	75	-	10.2653	8.52e-05	0.0282	TGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	76	85	-	10.2653	8.52e-05	0.0282	TGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	76	85	-	10.2653	8.52e-05	0.0282	TGGGAGGGGG
ERG	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	25	34	+	11.0545	8.52e-05	0.146	ACAGGATGTG
ERG	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	20	29	-	11.0545	8.52e-05	0.146	ACAGGATGTG
ERG	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	38	47	+	11.0545	8.52e-05	0.146	ACAGGATGTG
ERG	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	88	97	-	11.0545	8.52e-05	0.146	ACAGGATGTG
EGR3	WILDTYPE__mrna.flip.sense__chr16:30546257..30546371,-__1168.1.0.0	20	34	-	5.63793	8.52e-05	0.0418	CTCCGGCCCCGCCAG
EGR3	WILDTYPE__Antisense.flip.sense__chr16:30546299..30546413,+__343.1.0.0	39	53	+	5.63793	8.52e-05	0.0418	CTCCGGCCCCGCCAG
EGR3	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	56	70	+	5.63793	8.52e-05	0.0418	CTCCGCCCCCGGCTC
EGR3	FLIPPED__Antisense.flip.antisense__chr16:30546299..30546413,-__2652.1.0.0	62	76	-	5.63793	8.52e-05	0.0418	CTCCGGCCCCGCCAG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	78	92	+	5.63793	8.52e-05	0.0418	CTATGCCTCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	78	92	+	5.63793	8.52e-05	0.0418	CTATGCCTCCGCCCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	78	92	+	5.63793	8.52e-05	0.0418	CTATGCCTCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	78	92	+	5.63793	8.52e-05	0.0418	CTATGCCTCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	78	92	+	5.63793	8.52e-05	0.0418	CTATGCCTCCGCCCT
EGR3	FLIPPED__mrna.flip.antisense__chr16:30546257..30546371,+__2491.1.0.0	81	95	+	5.63793	8.52e-05	0.0418	CTCCGGCCCCGCCAG
EHF	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	9	20	-	9.7377	8.52e-05	0.144	AGCCCGGAAGGG
IRF2	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	14	31	+	4.30275	8.52e-05	0.632	GAAAAACCAAACGGACCT
MAFK	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	10	24	+	10.6444	8.52e-05	1	ATTGGTCAGCAGTGT
Rarb	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	6	21	+	-5.25862	8.53e-05	1	TGGTGACATAGGGTCA
Rarb	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	33	48	-	-5.25862	8.53e-05	1	TGGTGACATAGGGTCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	20	30	+	10.7073	8.53e-05	0.0265	CCGACGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	20	30	+	10.7073	8.53e-05	0.0265	CCGACGCCCCT
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	6	19	+	10.2273	8.53e-05	0.0676	TGGGGCCCAGCCTG
Klf12	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	3	17	+	7.63934	8.53e-05	0.0731	CGCCCCGCCCCTGCA
Klf12	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	57	71	-	7.63934	8.53e-05	0.0731	GAGCCCGCCCAGCCT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	98	112	-	7.63934	8.53e-05	0.0731	CGCCCCGCCCCTGCA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	98	112	-	7.63934	8.53e-05	0.0731	CGCCCCGCCCCTGCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	40	53	+	8.17241	8.53e-05	0.04	TTCTGCGCCCCCTC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	74	-	9.14754	8.53e-05	0.728	CCGTGACGTAACA
RUNX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	32	41	-	11.0962	8.53e-05	0.491	AAACCACAGG
RUNX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	32	41	-	11.0962	8.53e-05	0.491	AAACCACAGG
RUNX3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.1.0	6	15	+	11.0962	8.53e-05	0.491	AAACCACAGG
RUNX3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	6	15	+	11.0962	8.53e-05	0.491	AAACCACAGG
PLAG1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	87	100	-	4.85714	8.53e-05	0.0756	GAGGGAAAGGGGGA
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	8	24	+	2.94545	8.53e-05	0.0336	CCTACCCCTCCCATCCC
SP4	WILDTYPE__Antisense.noflip.NA__chr14:23388585..23388699,+__283.1.0.0	26	42	-	2.94545	8.53e-05	0.0336	TTTTCCCCGCCCTCCGC
SP4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	28	44	-	2.94545	8.53e-05	0.0336	CCCGCCACGCCTTCCAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	55	71	-	2.94545	8.53e-05	0.0336	GCAGCTCCGGCCCCACC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	55	71	-	2.94545	8.53e-05	0.0336	GCAGCTCCGGCCCCACC
SPI1	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	46	59	-	1.98182	8.53e-05	0.256	GCAACGGGGAAGTG
Npas2	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	5	14	+	11.3115	8.53e-05	0.335	GTCACGTGTC
Npas2	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	20	29	+	11.3115	8.53e-05	0.335	GTCACGTGTC
Npas2	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	40	49	+	11.3115	8.53e-05	0.335	GTCACGTGTC
Npas2	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	66	75	-	11.3115	8.53e-05	0.335	GTCACGTGTC
Npas2	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	86	95	-	11.3115	8.53e-05	0.335	GTCACGTGTC
Npas2	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	101	110	-	11.3115	8.53e-05	0.335	GTCACGTGTC
SOX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	99	113	+	0.632653	8.53e-05	1	AACGATCCCAGTGTC
GLIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	4	17	-	2.95455	8.53e-05	0.379	CACCCCCAACGTTG
LMX1A	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	-	10.5354	8.53e-05	1	GTAATTAA
LMX1A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	+	10.5354	8.53e-05	1	GTAATTAA
LMX1A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	+	10.5354	8.53e-05	1	GTAATTAA
LMX1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	+	10.5354	8.53e-05	1	GTAATTAA
LMX1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	+	10.5354	8.53e-05	1	GTAATTAA
LMX1A	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	+	10.5354	8.53e-05	1	GTAATTAA
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	66	82	-	-6.89091	8.53e-05	1	GATGCCAGAAAAGGACA
NFIC::TLX1	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	51	64	-	4.56122	8.53e-05	0.377	TCGCCCGTTGCCAT
NFIC::TLX1	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	51	64	+	4.56122	8.53e-05	0.377	TCGCCCGTTGCCAT
EBF1	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	3	16	+	8.52459	8.53e-05	0.365	CTTCCTCAGGGAAC
EBF1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	25	38	+	8.52459	8.53e-05	0.365	CTTCCCCAGGAAAC
EBF1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	77	90	-	8.52459	8.53e-05	0.365	CTTCCCCAGGAAAC
EBF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	99	112	-	8.52459	8.53e-05	0.365	CTTCCTCAGGGAAC
EBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	99	112	-	8.52459	8.53e-05	0.365	CTTCCTCAGGGAAC
PROX1	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	29	40	-	8.16364	8.53e-05	1	TATGATGTCTTG
PROX1	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	71	82	+	8.16364	8.53e-05	1	TATGATGTCTTG
Gfi1b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	17	27	+	10.7586	8.53e-05	0.597	CAATCAGAGAA
Gfi1b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	17	27	+	10.7586	8.53e-05	0.597	CAATCAGAGAA
Gfi1b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	17	27	+	10.7586	8.53e-05	0.597	CAATCAGAGAA
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	17	27	+	10.7586	8.53e-05	0.597	CAATCAGAGAA
Gfi1b	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	4	14	-	10.7586	8.53e-05	0.597	CAATCAGAGAA
NOTO	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	+	10.84	8.53e-05	1	GCCAATTAGC
NOTO	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	46	55	+	10.84	8.53e-05	1	TCTCATTAGC
NOTO	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	17	26	-	10.84	8.53e-05	1	TCTCATTAGC
E2F4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	28	38	-	10.2759	8.53e-05	0.0512	GCGCGGGGGAA
E2F4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	44	54	-	10.2759	8.53e-05	0.0512	ACGCGCGAACG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	61	71	+	10.2759	8.53e-05	0.0512	ACGCGCGAACG
E2F4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	77	87	+	10.2759	8.53e-05	0.0512	GCGCGGGGGAA
CTCF	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	32	50	-	8.14754	8.53e-05	0.133	GGGCAAGAGGGTGGCAGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	65	83	+	8.14754	8.53e-05	0.133	GGGCAAGAGGGTGGCAGTG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	65	83	+	8.14754	8.53e-05	0.133	GGGCAAGAGGGTGGCAGTG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	10	22	-	7.51515	8.54e-05	0.264	AGGGCCTTCCCCG
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	10	22	-	7.51515	8.54e-05	0.264	AGGGCCTTCCCCG
NFKB2	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	36	48	+	7.51515	8.54e-05	0.264	AGGGCCTTCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	67	79	-	7.51515	8.54e-05	0.264	AGGGCCTTCCCCG
NFKB2	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	93	105	+	7.51515	8.54e-05	0.264	AGGGCCTTCCCCG
INSM1	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	91	102	+	9.16327	8.54e-05	0.196	TTCCTGCGGTCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	36	47	-	10.4342	8.54e-05	0.0378	CCTCCGCCCCCA
SP8	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	27	38	+	10.4342	8.54e-05	0.0378	CCTCCGCCCCCA
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	18	34	+	10.5658	8.54e-05	0.668	CTGGGTACGCCAGCGGG
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	18	34	+	10.5658	8.54e-05	0.668	CTGGGTACGCCAGCGGG
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	-	1.67347	8.54e-05	1	TCACATTTGTCA
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	+	1.67347	8.54e-05	1	TCACATTTGTCA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	19	-	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	19	-	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	19	-	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	19	-	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	45	55	+	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	70	-	9.85246	8.54e-05	0.183	TACAGGAAGTC
ETV2	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	96	106	+	9.85246	8.54e-05	0.183	TACAGGAAGTC
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	22	-	9.31148	8.54e-05	0.0644	GCCCCCCCGGGGC
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	57	69	+	9.31148	8.54e-05	0.0644	TCCCTTTAAGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	46	58	-	9.31148	8.54e-05	0.0644	TCCCTTTAAGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	46	58	-	9.31148	8.54e-05	0.0644	TCCCTTTAAGGGG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	58	+	-15.75	8.54e-05	0.0547	CGCCGGAGGGGAGGAATG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	81	+	-15.75	8.54e-05	0.0547	CGCCGGAGGGGAGGAATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	67	84	+	-15.75	8.54e-05	0.0547	GGAAGGAAACTTGGAAAA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	90	107	+	-15.75	8.54e-05	0.0547	GGGAAGCAGGCTGGAGAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	34	51	-	-15.75	8.54e-05	0.0547	CGCCGGAGGGGAGGAATG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	57	74	-	-15.75	8.54e-05	0.0547	CGCCGGAGGGGAGGAATG
Hmx2	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	10	26	-	10.3158	8.54e-05	1	CAGACCAATTTAGGGAT
ZNF263	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	49	69	-	9.16327	8.54e-05	0.0222	GGAGGGAAGGAGGGAGGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	56	76	-	9.16327	8.54e-05	0.0222	GGGGGAACGGGGGCGGGGCTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	57	77	-	9.16327	8.54e-05	0.0222	GAAGGCGGAGACGCCGGGGCG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	57	77	-	9.16327	8.54e-05	0.0222	GAAGGCGGAGACGCCGGGGCG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	63	83	-	9.16327	8.54e-05	0.0222	GAATGAAAACGGTGAGAAGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	86	106	-	9.16327	8.54e-05	0.0222	GGTGGGAGAGGGGGAAAAAAA
ZNF263	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	92	112	-	9.16327	8.54e-05	0.0222	GGGGCTTGCGGGAGGGGGGCG
ZNF263	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	3	23	+	9.16327	8.54e-05	0.0222	GGGGCTTGCGGGAGGGGGGCG
ZNF263	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	46	66	+	9.16327	8.54e-05	0.0222	GGAGGGAAGGAGGGAGGGGCG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr6:111804660..111804774,+__728.1.0.0	57	77	+	9.16327	8.54e-05	0.0222	GGGGCTTGCGGGAGGGGGGCG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	66	86	+	9.16327	8.54e-05	0.0222	AGAGGAAGCCAAGAGGAAAGC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr6:44026428..44026542,+__1816.1.0.0	91	104	-	6.85714	8.54e-05	0.234	GTGTGAGGTCATTG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	9	19	-	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	96	106	+	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	96	106	+	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	96	106	+	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	96	106	+	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	96	106	+	10.8077	8.54e-05	0.0758	TGCCTAAAGCT
Rfx1	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	25	38	-	9.60345	8.54e-05	0.318	GGCACCTGAGCGAC
Rfx1	WILDTYPE__mrna.noflip.NA__chr11:118972528..118972642,-__1252.1.0.0	89	102	-	9.60345	8.54e-05	0.318	CTCTCTAAGGCAAC
Rfx1	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	77	90	+	9.60345	8.54e-05	0.318	GGCACCTGAGCGAC
Ar	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	69	85	-	5.89655	8.54e-05	0.882	GGGTACATGGACTGCCC
ZBTB7A	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	64	75	-	10.4286	8.54e-05	0.224	GAGGCCCACCCA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	40	51	+	10.4286	8.54e-05	0.224	GAGGCCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	40	51	+	10.4286	8.54e-05	0.224	GAGGCCCACCCA
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	40	51	+	10.4286	8.54e-05	0.224	GAGGCCCACCCA
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	40	51	+	10.4286	8.54e-05	0.224	GAGGCCCACCCA
ERF	FLIPPED__Antisense.flip.antisense__chr11:82904670..82904784,+__2349.1.0.0	53	62	+	10.5857	8.54e-05	0.126	ACGGGAAATG
ERF	WILDTYPE__Antisense.flip.sense__chr11:82904670..82904784,-__202.1.0.0	53	62	-	10.5857	8.54e-05	0.126	ACGGGAAATG
ZIC1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	7	20	+	5.61702	8.54e-05	0.105	GGCCGCCCGCCGAC
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	11	24	+	5.61702	8.54e-05	0.105	GCTCCCATGCTGTG
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	11	24	+	5.61702	8.54e-05	0.105	GCTCCCATGCTGTG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.0.0	36	49	-	5.61702	8.54e-05	0.105	GGCCCCGCGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:16342543..16342657,+__354.1.1.0	36	49	-	5.61702	8.54e-05	0.105	GGCCCCGCGCTGCC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118927851..118927965,-__981.1.1.0	53	66	+	5.61702	8.54e-05	0.105	GAGCGCCCGCCGCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	91	104	-	5.61702	8.54e-05	0.105	GCTCCCATGCTGTG
ZIC1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	95	108	-	5.61702	8.54e-05	0.105	GGCCGCCCGCCGAC
Rarb(var.2)	WILDTYPE__mrna.noflip.NA__chrX:132887704..132887818,-__1128.1.0.0	7	23	+	-3.42424	8.54e-05	0.861	TGATCACCTGAAGTTCA
Rarg	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	74	89	+	-3.26531	8.55e-05	0.877	CAGGGGAAAAGCTCAC
ETV3	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	45	54	-	10.8028	8.55e-05	0.176	ACAGGAAGTA
ETV3	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	61	70	+	10.8028	8.55e-05	0.176	ACAGGAAGTA
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	83	92	+	10.8028	8.55e-05	0.176	GCCGGATGTT
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	83	92	+	10.8028	8.55e-05	0.176	GCCGGATGTT
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	18	28	-	10.8455	8.55e-05	0.77	AGGGAAGCAGG
Spz1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	61	71	-	10.8455	8.55e-05	0.77	AGGGAAGCAGG
Spz1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	61	71	-	10.8455	8.55e-05	0.77	AGGGAAGCAGG
Spz1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	87	97	+	10.8455	8.55e-05	0.77	AGGGAAGCAGG
KLF5	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	4	13	+	10.7959	8.55e-05	0.0275	ACTCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	15	24	+	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	7	16	-	10.7959	8.55e-05	0.0275	CCTCCACCCA
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:100731637..100731751,+__2321.1.0.0	26	35	+	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	22	31	-	10.7959	8.55e-05	0.0275	ACTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	22	31	-	10.7959	8.55e-05	0.0275	ACTCCACCCC
KLF5	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	29	38	-	10.7959	8.55e-05	0.0275	CCTCCACCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	47	56	-	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	47	56	-	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	47	56	-	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	47	56	-	10.7959	8.55e-05	0.0275	TCCTCGCCCC
KLF5	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	55	64	-	10.7959	8.55e-05	0.0275	CCTCCACCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	88	97	+	10.7959	8.55e-05	0.0275	CCTCCACCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	88	97	+	10.7959	8.55e-05	0.0275	CCTCCACCCA
KLF5	WILDTYPE__Lincrna.flip.sense__chr1:100731637..100731751,-__2.1.0.0	80	89	-	10.7959	8.55e-05	0.0275	TCCTCGCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	33	43	+	10.3462	8.55e-05	0.02	GCCCCTCCTTA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	33	43	+	10.3462	8.55e-05	0.02	GCCCCTCCTTA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	94	104	-	10.3462	8.55e-05	0.02	GCCCCTCCTTA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	94	104	-	10.3462	8.55e-05	0.02	GCCCCTCCTTA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	9	23	+	8.81429	8.55e-05	0.122	CGGGGTGGGGGTGGA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	9	23	+	8.81429	8.55e-05	0.122	CGGGGTGGGGGTGGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	9	23	+	8.81429	8.55e-05	0.122	CGGGGTGGGGGTGGA
NR2C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	33	47	+	8.81429	8.55e-05	0.122	GTGGGTCAAGGGGAG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	33	47	+	8.81429	8.55e-05	0.122	GTGGGTCAAGGGGAG
NR2C2	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	25	39	-	8.81429	8.55e-05	0.122	CGGGGTGGGGGGCGG
NR2C2	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	76	90	+	8.81429	8.55e-05	0.122	CGGGGTGGGGGGCGG
NR2C2	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	68	82	-	8.81429	8.55e-05	0.122	GTGGGTCAAGGGGAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	59	73	-	9.78788	8.55e-05	0.125	TCCCCGCGGGCTCAG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	59	73	-	9.78788	8.55e-05	0.125	TCCCCGCGGGCTCAG
ZBTB33	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	42	56	+	9.78788	8.55e-05	0.125	TCCCCGCGGGCTCAG
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	56	65	-	9.45455	8.55e-05	1	AACACATGCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	6	21	+	9.81818	8.55e-05	0.0416	CCCCCCCCCCCCCCAG
EGR4	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	11	26	+	9.81818	8.55e-05	0.0416	TCCCGCCGCCGCCAGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	13	28	+	9.81818	8.55e-05	0.0416	GTCCGCCCCCTCCCCC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	19	34	+	9.81818	8.55e-05	0.0416	CGCCGCGCCCCCATTG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	19	34	+	9.81818	8.55e-05	0.0416	CGCCGCGCCCCCATTG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	21	36	+	9.81818	8.55e-05	0.0416	CGACGCCCCTCCCCTT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	21	36	+	9.81818	8.55e-05	0.0416	CGACGCCCCTCCCCTT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	25	40	-	9.81818	8.55e-05	0.0416	GCCCGCCCCTGCCTGG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	25	40	-	9.81818	8.55e-05	0.0416	GCCCGCCCCTGCCTGG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	60	75	-	9.81818	8.55e-05	0.0416	CGCCGCGCCCCCATTG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	60	75	-	9.81818	8.55e-05	0.0416	CGCCGCGCCCCCATTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	80	95	-	9.81818	8.55e-05	0.0416	CTCCGCCGCCGCCTGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	80	95	-	9.81818	8.55e-05	0.0416	CTCCGCCGCCGCCTGC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	13	26	+	10.6731	8.55e-05	0.23	TCCCGGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	13	26	+	10.6731	8.55e-05	0.23	TCCCGGTGACTCAG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	97	110	-	10.6731	8.55e-05	0.23	TCCCGGTGACTCAG
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	97	110	-	10.6731	8.55e-05	0.23	TCCCGGTGACTCAG
POU4F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.0.0	25	38	-	10.5118	8.55e-05	1	GTGAATGATTAACT
POU4F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:126220956..126221070,+__1283.1.1.0	25	38	-	10.5118	8.55e-05	1	GTGAATGATTAACT
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	1	12	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	17	28	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	18	29	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	24	35	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	28	39	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	28	39	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	67	78	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	67	78	-	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	62	73	+	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	68	79	+	10.0517	8.55e-05	0.365	GGGACCCCCCCC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	68	79	+	10.0517	8.55e-05	0.365	GGGACCCCCCCC
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	80	91	+	10.0517	8.55e-05	0.365	CCGCCCCCCGCC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	45	60	-	8.72727	8.55e-05	0.425	AGTTACTATGTCAACA
Foxj3	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	21	37	-	10.8182	8.55e-05	1	CCATGGTAAACAGATGT
Foxj3	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	78	94	+	10.8182	8.55e-05	1	CCATGGTAAACAGATGT
KLF13	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	51	68	+	3.81034	8.55e-05	0.343	GGGACACACCCACCCGCC
KLF13	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	45	62	-	3.81034	8.55e-05	0.343	CGGCCACTCCCCTCACCC
KLF13	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	47	64	-	3.81034	8.55e-05	0.343	GGGACACACCCACCCGCC
FOXP1	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	90	104	+	10.5915	8.55e-05	0.377	TAAAAAAAAAAAAAG
FOXP1	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	11	25	-	10.5915	8.55e-05	0.377	TAAAAAAAAAAAAAG
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	28	42	-	10.5915	8.55e-05	0.377	TAAAAAAAAAAAAAG
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	28	42	-	10.5915	8.55e-05	0.377	TAAAAAAAAAAAAAG
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	5	14	-	10.9596	8.55e-05	0.341	GGTGATTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	48	57	-	10.9596	8.55e-05	0.341	GGAGATTTCC
REL	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	101	110	+	10.9596	8.55e-05	0.341	GGTGATTTCC
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	20	33	-	4.84694	8.55e-05	0.0756	GAGTCCTGATGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	98	111	+	4.84694	8.55e-05	0.0756	GGGGCCACCGGGAG
TFAP2C	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	27	38	+	10.8265	8.55e-05	0.0876	CCCCGGGGGGCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	83	94	+	10.8265	8.55e-05	0.0876	CCCCGGGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	32	-	10.8265	8.55e-05	0.0876	CCCCGGGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	32	-	10.8265	8.55e-05	0.0876	CCCCGGGGGGCA
TFAP2C	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	88	-	10.8265	8.55e-05	0.0876	CCCCGGGGGGCA
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	43	52	+	10.1455	8.56e-05	0.655	CACAGCTGGC
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.1.0	43	52	+	10.1455	8.56e-05	0.655	CACAGCTGGC
ELF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	92	104	-	7.62069	8.56e-05	0.183	TACGCGGAAGCCC
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	92	104	-	7.62069	8.56e-05	0.183	TACGCGGAAGCCC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	16	27	-	9.87931	8.56e-05	0.33	CCGACCACGCCC
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	16	27	-	9.87931	8.56e-05	0.33	CCGACCACGCCC
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	16	27	-	9.87931	8.56e-05	0.33	CCGACCACGCCC
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	16	27	-	9.87931	8.56e-05	0.33	CCGACCACGCCC
GLI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	7	18	+	9.87931	8.56e-05	0.33	CCGACCACGCCC
GLI2	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	88	99	+	9.87931	8.56e-05	0.33	CCGACCACGCCC
NRF1	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	4	14	+	9.41818	8.56e-05	0.0234	GCGCCTGCCAA
NRF1	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	5	15	+	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	6	16	-	9.41818	8.56e-05	0.0234	CCGCTGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	30	40	+	9.41818	8.56e-05	0.0234	CCGCTGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	30	40	+	9.41818	8.56e-05	0.0234	CCGCTGGCGCC
NRF1	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	30	40	-	9.41818	8.56e-05	0.0234	GCGTGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	32	42	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	32	42	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	32	42	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	32	42	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	34	44	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	55	65	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	71	81	+	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	75	85	+	9.41818	8.56e-05	0.0234	GCGTGGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	68	78	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	68	78	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	100	110	-	9.41818	8.56e-05	0.0234	GCGGCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	101	111	-	9.41818	8.56e-05	0.0234	GCGCCTGCCAA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	101	111	-	9.41818	8.56e-05	0.0234	GCGCCTGCCAA
Rarb	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	32	47	-	-5.27586	8.56e-05	1	CGAGGGCATGAGGGCG
MEF2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	9	20	-	5.96364	8.56e-05	1	TCCAAAAATAAC
MEF2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	9	20	-	5.96364	8.56e-05	1	TCCAAAAATAAC
MYBL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	85	99	-	8.7541	8.56e-05	1	ATCTGTTAAACACTT
MYBL2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	85	99	-	8.7541	8.56e-05	1	ATCTGTTAAACACTT
MYBL2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	85	99	-	8.7541	8.56e-05	1	ATCTGTTAAACACTT
MYBL2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	85	99	-	8.7541	8.56e-05	1	ATCTGTTAAACACTT
mix-a	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	103	-	11.6349	8.56e-05	1	AACTAATTAGA
HES5	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	3	14	-	1.68966	8.56e-05	0.298	TGACAGGTGCCC
HES5	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	101	112	+	1.68966	8.56e-05	0.298	TGACAGGTGCCC
MNT	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	3	12	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	-	11.8333	8.56e-05	0.338	TGCACGTGAT
MNT	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	24	33	-	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	34	43	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	34	43	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	54	63	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	54	63	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	67	76	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	67	76	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	73	82	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	73	82	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	68	77	-	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	68	77	-	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	82	91	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	87	96	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	87	96	+	11.8333	8.56e-05	0.338	GTCACGTGCC
MNT	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	103	112	-	11.8333	8.56e-05	0.338	GTCACGTGCC
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	3	12	-	11.0192	8.56e-05	0.805	CTTGTGCAAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	3	12	-	11.0192	8.56e-05	0.805	CTTGTGCAAT
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	3	12	-	11.0192	8.56e-05	0.805	CTTGTGCAAT
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	22	34	-	9.2069	8.56e-05	0.0578	GGCCTTGTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	98	110	+	9.2069	8.56e-05	0.0578	TGCCCGGGTGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	98	110	+	9.2069	8.56e-05	0.0578	TGCCCGGGTGGCC
MEF2A	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	77	88	+	8.32258	8.56e-05	1	GCTAGAAATAAC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	57	71	-	9.89091	8.56e-05	0.112	CCACCCCCACGGCTC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	47	61	+	9.89091	8.56e-05	0.112	CCACCCCCACGGCTC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	58	72	+	9.89091	8.56e-05	0.112	CCCCCCCCGCGCCGC
RREB1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	70	89	-	2.93578	8.56e-05	0.0728	CCCCACCCGGACCCATCAGC
RREB1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	94	113	-	2.93578	8.56e-05	0.0728	CCCCACCCGGACCCATCAGC
RREB1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	2	21	+	2.93578	8.56e-05	0.0728	CCCCACCCGGACCCATCAGC
RREB1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	26	45	+	2.93578	8.56e-05	0.0728	CCCCACCCGGACCCATCAGC
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	45	64	+	2.93578	8.56e-05	0.0728	CACACACACACCGGCACACA
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	45	64	+	2.93578	8.56e-05	0.0728	CACACACACACCGGCACACA
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	71	90	+	2.93578	8.56e-05	0.0728	CTCCACCACAGCCCACCAGT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	71	90	+	2.93578	8.56e-05	0.0728	CTCCACCACAGCCCACCAGT
Mafb	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	98	109	-	10.9551	8.56e-05	0.865	AGCTTGCTGACA
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	2	9	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	2	9	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	14	21	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	24	31	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	24	31	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	24	31	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	22	29	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	22	29	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	22	29	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	22	29	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	28	35	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:48887185..48887299,-__2084.1.0.0	28	35	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	35	42	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	42	49	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	43	50	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	43	50	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	40	47	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	42	49	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	49	56	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	60	67	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	64	71	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	66	73	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	65	72	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	73	80	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	73	80	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	66	73	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	73	80	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	73	80	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	73	80	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	80	87	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	80	87	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.0.0	95	102	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:28974390..28974504,+__1571.1.1.0	95	102	+	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	91	98	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	104	111	-	11.1184	8.56e-05	0.388	GGACGTGG
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	104	111	-	11.1184	8.56e-05	0.388	GGACGTGG
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	26	38	+	7.5	8.56e-05	0.264	CCGGGCTCCCCCC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	26	38	+	7.5	8.56e-05	0.264	CCGGGCTCCCCCC
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	26	38	+	7.5	8.56e-05	0.264	CCGGGCTCCCCCC
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	26	38	+	7.5	8.56e-05	0.264	CCGGGCTCCCCCC
TFAP2A(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	+	9.7541	8.56e-05	0.0589	CGCCCGGGCGGCC
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	-	9.7541	8.56e-05	0.0589	CGCCCGGGCGGCC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	55	72	-	-15.7632	8.57e-05	0.0547	GGAAAGGAGGGGAGCAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	60	77	-	-15.7632	8.57e-05	0.0547	GGGAGGAAGGGAAGGGAT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	60	77	-	-15.7632	8.57e-05	0.0547	GGGAGGAAGGGAAGGGAT
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	+	11.2	8.57e-05	0.822	CTTGCGTAAT
HOXD13	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	72	81	-	10.9365	8.57e-05	1	TCAATAAAAA
HOXD13	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	72	81	-	10.9365	8.57e-05	1	TCAATAAAAA
HOXD13	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	72	81	-	10.9365	8.57e-05	1	TCAATAAAAA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	2	16	-	5.62069	8.57e-05	0.0418	CCACCCCCACCCCTC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	46	60	+	5.62069	8.57e-05	0.0418	CCACCCCCACCCCTC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	46	60	+	5.62069	8.57e-05	0.0418	CCACCCCCACCCCTC
EGR3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	81	95	+	5.62069	8.57e-05	0.0418	CCGCCCCCCCGCGAC
IRF2	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	86	103	-	4.2844	8.57e-05	0.632	GAAAAACGGAACCTGTGG
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	22	38	+	2.92727	8.57e-05	0.0337	CTGGCCCAGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	22	38	+	2.92727	8.57e-05	0.0337	CTGGCCCAGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	22	38	+	2.92727	8.57e-05	0.0337	CTGGCCCAGCCCCGCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	22	38	+	2.92727	8.57e-05	0.0337	CTGGCCCAGCCCCGCCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	44	55	-	10.8545	8.57e-05	0.0934	CGCCTCCCGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	101	112	-	10.8545	8.57e-05	0.0934	ACCCCACAGGCA
Barhl1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	-	9.43396	8.57e-05	1	CGTAATTGGC
Barhl1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	-	9.43396	8.57e-05	1	CGTAATTGGC
Barhl1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	+	9.43396	8.57e-05	1	CGTAATTGGC
Barhl1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	+	9.43396	8.57e-05	1	CGTAATTGGC
Barhl1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	-	9.43396	8.57e-05	1	CGTAATTGGC
Barhl1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	+	9.43396	8.57e-05	1	CGTAATTGGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	22	31	+	10.2294	8.57e-05	0.0553	GACCCCCCTC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	22	31	+	10.2294	8.57e-05	0.0553	GACCCCCCTC
TEAD4	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	46	55	-	11.0645	8.57e-05	0.839	CGCATTCCGA
Klf4	WILDTYPE__Lincrna.noflip.NA__chr11:112160953..112161067,+__154.1.0.0	3	12	+	10.2551	8.57e-05	0.0284	CGGGCGTGGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	95	104	-	10.2551	8.57e-05	0.0284	CGGGCGTGGT
NFYB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	8	22	+	10.0192	8.57e-05	0.221	TAAGGAACCAATAGG
NFYB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	8	22	+	10.0192	8.57e-05	0.221	TAAGGAACCAATAGG
NFYB	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	93	107	-	10.0192	8.57e-05	0.221	TAAGGAACCAATAGG
USF1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	18	28	-	10.551	8.57e-05	0.237	CCCACATGGCC
USF1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	34	44	-	10.551	8.57e-05	0.237	CCCACATGGCC
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	6	16	+	10.551	8.57e-05	0.237	GGCACCTGACT
USF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	6	16	+	10.551	8.57e-05	0.237	GGCACCTGACT
USF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	6	16	+	10.551	8.57e-05	0.237	GGCACCTGACT
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	6	16	+	10.551	8.57e-05	0.237	GGCACCTGACT
USF1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	71	81	+	10.551	8.57e-05	0.237	CCCACATGGCC
USF1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	87	97	+	10.551	8.57e-05	0.237	CCCACATGGCC
EHF	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	97	108	+	9.72131	8.57e-05	0.144	CAGCCGGAAACA
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	30	40	+	10.5091	8.57e-05	0.0718	CGCCGCGGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	35	45	+	10.5091	8.57e-05	0.0718	GCCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	35	45	+	10.5091	8.57e-05	0.0718	GCCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	35	45	+	10.5091	8.57e-05	0.0718	GCCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	35	45	+	10.5091	8.57e-05	0.0718	GCCCCCAGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	57	67	+	10.5091	8.57e-05	0.0718	AGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	57	67	+	10.5091	8.57e-05	0.0718	AGCCGGCGGCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	75	85	-	10.5091	8.57e-05	0.0718	CGCCGCGGGCC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	44	57	-	7.54098	8.57e-05	0.186	GCCCTCCCTCGGGG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	44	57	-	7.54098	8.57e-05	0.186	GCCCTCCCTCGGGG
GLIS2	FLIPPED__mrna.flip.antisense__chrX:149106654..149106768,+__2526.1.0.0	87	100	-	7.54098	8.57e-05	0.186	GGCCTCCTGCGTAC
GLIS2	WILDTYPE__mrna.flip.sense__chrX:149106654..149106768,-__1231.1.0.0	15	28	+	7.54098	8.57e-05	0.186	GGCCTCCTGCGTAC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	31	49	+	10.0968	8.57e-05	0.155	AGAAGCTGCCAAGGGAGAC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr17:48133028..48133142,-__366.1.0.0	55	73	+	10.0968	8.57e-05	0.155	AAGGCCAGCCGGGCTGGAG
Myod1	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	56	68	-	11.1837	8.57e-05	0.197	AACAGCTGCCAAT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	31	42	-	10.4211	8.58e-05	0.038	CACACGCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	57	71	+	7.62295	8.58e-05	0.0731	GACCCCTCCCCCATC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	57	71	+	7.62295	8.58e-05	0.0731	GACCCCTCCCCCATC
JUN	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	66	78	+	9.65306	8.58e-05	0.339	GCCGTGACGCCAT
JUN	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	91	103	-	9.65306	8.58e-05	0.339	GGCATGAGGTAAG
KLF14	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	5	18	+	8.15517	8.58e-05	0.0401	GGCCACCCCTCCAA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	28	41	+	8.15517	8.58e-05	0.0401	CACTGCGCCCCTAT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	70	83	-	8.15517	8.58e-05	0.0401	CACTGCGCCCCTAT
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	97	110	-	8.15517	8.58e-05	0.0401	GGCCACCCCTCCAA
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	97	110	-	8.15517	8.58e-05	0.0401	GGCCACCCCTCCAA
Nkx2-5(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	91	101	+	11.1455	8.58e-05	0.735	TGCCTCTCCAG
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	18	28	+	10.4098	8.58e-05	0.0771	CCGGAAGTTTT
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.0.0	39	52	+	10.2121	8.58e-05	0.0677	GCGGGGCGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	39	52	+	10.2121	8.58e-05	0.0677	GCGGGGCGGGCCTG
Zfx	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	83	96	+	10.2121	8.58e-05	0.0677	TCCGCCATGGCCTC
TFE3	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	6	15	+	10.8571	8.58e-05	0.164	GCCTCGTGAC
CLOCK	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	79	88	+	10.8333	8.58e-05	0.585	CACACGTGGA
CLOCK	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	79	88	+	10.8333	8.58e-05	0.585	CACACGTGGA
TGIF2	FLIPPED__Enhancer.flip.antisense__chr14:105948355..105948469,+__2572.1.0.0	4	15	-	7.59633	8.58e-05	0.855	AGGCAGGCGTCA
TGIF2	WILDTYPE__Enhancer.flip.sense__chr14:105948355..105948469,-__2155.1.0.0	100	111	+	7.59633	8.58e-05	0.855	AGGCAGGCGTCA
TBX2	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	108	+	10.8909	8.58e-05	1	AGGGTGTGACG
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.1	98	107	+	11.3621	8.58e-05	0.859	AACAGCTGTC
PRDM1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	12	26	+	9.89091	8.58e-05	0.344	GGGAGGGGAGAGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	20	33	-	4.83673	8.58e-05	0.0756	GGGTGCAAAGGTGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	20	33	-	4.83673	8.58e-05	0.0756	GGGTGCAAAGGTGA
PLAG1	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	22	35	-	4.83673	8.58e-05	0.0756	GGGGCTGCGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	56	69	+	4.83673	8.58e-05	0.0756	GAGTGCGGAGGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	56	69	+	4.83673	8.58e-05	0.0756	GAGTGCGGAGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	80	93	+	4.83673	8.58e-05	0.0756	GGGGCTGCGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	80	93	+	4.83673	8.58e-05	0.0756	GGGGCTGCGGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	80	93	+	4.83673	8.58e-05	0.0756	GGGGCTGCGGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	80	93	+	4.83673	8.58e-05	0.0756	GGGGCTGCGGGGGA
RORA	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	3	12	-	11.4607	8.58e-05	0.973	CACAAGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	104	113	+	11.4607	8.58e-05	0.973	CACAAGGTCA
RORA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	104	113	+	11.4607	8.58e-05	0.973	CACAAGGTCA
RORA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	104	113	+	11.4607	8.58e-05	0.973	CACAAGGTCA
RORA	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	104	113	+	11.4607	8.58e-05	0.973	CACAAGGTCA
IRF7	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	15	28	+	8.04839	8.58e-05	0.783	TGGAAAACGTAAGT
IRF7	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	87	100	-	8.04839	8.58e-05	0.783	TGGAAAACGTAAGT
Bcl6	WILDTYPE__mrna.noflip.NA__chr11:110001649..110001763,+__979.1.0.0	94	107	+	10.3226	8.59e-05	0.504	CTGCCTGGAAGTCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	25	35	+	10.303	8.59e-05	0.0551	AGGCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	25	35	+	10.303	8.59e-05	0.0551	AGGCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	25	35	+	10.303	8.59e-05	0.0551	AGGCCCGCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	25	35	+	10.303	8.59e-05	0.0551	AGGCCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	25	35	-	10.303	8.59e-05	0.0551	TGCTCCGCCCA
Klf1	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	49	59	+	10.303	8.59e-05	0.0551	TGCTCCGCCCA
Klf1	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	56	66	-	10.303	8.59e-05	0.0551	TGCTCCGCCCA
MTF1	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	55	68	-	5.60976	8.59e-05	0.523	TGTGAACCCTGCCC
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	11	22	+	5.6	8.59e-05	1	ATTAAAATTAGC
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	11	22	+	5.6	8.59e-05	1	ATTAAAATTAGC
MEF2D	WILDTYPE__Enhancer.flip.sense__chr17:9688051..9688165,+__1774.1.0.0	27	38	-	5.6	8.59e-05	1	ATTAAAATTAGC
MEF2D	FLIPPED__Enhancer.flip.antisense__chr17:9688051..9688165,-__2831.1.0.0	77	88	+	5.6	8.59e-05	1	ATTAAAATTAGC
MEF2D	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	93	104	-	5.6	8.59e-05	1	ATTAAAATTAGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	14	27	-	9.75	8.59e-05	0.0297	ATGCCTCCCACGGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	21	34	-	9.75	8.59e-05	0.0297	GCCCCTCCCCTGGT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	21	34	-	9.75	8.59e-05	0.0297	GCCCCTCCCCTGGT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	25	38	-	9.75	8.59e-05	0.0297	GCCTCTCCCCCTGG
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	25	38	-	9.75	8.59e-05	0.0297	GCCTCTCCCCCTGG
EGR1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	50	63	+	9.75	8.59e-05	0.0297	CCTTCACCGCCTCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	60	73	+	9.75	8.59e-05	0.0297	TATCCTCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	60	73	+	9.75	8.59e-05	0.0297	TATCCTCCGCCACC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	60	73	+	9.75	8.59e-05	0.0297	TATCCTCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	60	73	+	9.75	8.59e-05	0.0297	TATCCTCCGCCACC
EGR1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	52	65	-	9.75	8.59e-05	0.0297	CCTTCACCGCCTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	66	79	+	9.75	8.59e-05	0.0297	GCCCTGCCCACTGG
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	66	79	+	9.75	8.59e-05	0.0297	GCCCTGCCCACTGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	64	77	-	9.75	8.59e-05	0.0297	CCCCAACCCACTGC
EGR1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	88	101	+	9.75	8.59e-05	0.0297	ATGCCTCCCACGGA
EGR1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	81	94	-	9.75	8.59e-05	0.0297	CTGCTGCCCCCTTC
GCM1	WILDTYPE__Enhancer.noflip.NA__chr3:11315762..11315876,+__2021.1.0.0	21	31	-	10.3673	8.59e-05	0.551	CATGAGGGCAG
GCM1	WILDTYPE__Enhancer.noflip.NA__chr3:11315710..11315824,-__2314.1.0.0	32	42	+	10.3673	8.59e-05	0.551	CATGAGGGCAG
GCM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.1.0	28	38	-	10.3673	8.59e-05	0.551	CATGCTGGCTC
GCM1	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	50	60	+	10.3673	8.59e-05	0.551	CATGCTGGCTC
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	19	30	+	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	19	30	+	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	19	30	+	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	19	30	+	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	102	113	-	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	102	113	-	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	102	113	-	8.14545	8.59e-05	1	AATGACGTCTCC
PROX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	102	113	-	8.14545	8.59e-05	1	AATGACGTCTCC
Esrra	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	2	12	-	6.74545	8.59e-05	1	CACAAGGTCAG
Esrra	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	104	114	+	6.74545	8.59e-05	1	CACAAGGTCAG
Esrra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	104	114	+	6.74545	8.59e-05	1	CACAAGGTCAG
Esrra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	104	114	+	6.74545	8.59e-05	1	CACAAGGTCAG
Esrra	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.1.0	104	114	+	6.74545	8.59e-05	1	CACAAGGTCAG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr14:74960031..74960145,-__1310.1.0.0	18	28	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	23	33	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	23	33	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	23	33	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	23	33	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	38	48	+	10.9455	8.59e-05	0.0554	TCCCCCCGGCT
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	45	55	+	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	59	69	-	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	60	70	-	10.9455	8.59e-05	0.0554	AGCCGGGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	82	92	-	10.9455	8.59e-05	0.0554	CGCCTGCGGGG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	82	92	-	10.9455	8.59e-05	0.0554	CGCCTGCGGGG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	26	37	-	1.67241	8.59e-05	0.298	AGGCGCGCGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	26	37	-	1.67241	8.59e-05	0.298	AGGCGCGCGCCG
HES5	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	56	67	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	58	69	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	58	69	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	58	69	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	58	69	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	58	69	+	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	48	59	-	1.67241	8.59e-05	0.298	CCGCGCGTGCCC
HES5	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	78	89	+	1.67241	8.59e-05	0.298	AGGCGCGCGCCG
CTCF	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	25	43	-	8.13115	8.59e-05	0.133	TGGTCGGCAGGAGCCGGCA
CTCF	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	72	90	+	8.13115	8.59e-05	0.133	TGGTCGGCAGGAGCCGGCA
ELF1	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	37	48	+	8.30909	8.59e-05	0.13	CCACCGGAAGCC
ELF1	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	47	58	+	8.30909	8.59e-05	0.13	CCACCGGAAGCC
ELF1	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	57	68	-	8.30909	8.59e-05	0.13	CCACCGGAAGCC
ELF1	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	67	78	-	8.30909	8.59e-05	0.13	CCACCGGAAGCC
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	24	38	+	-6.74286	8.59e-05	0.998	CGGGTCCTGTGGTCG
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	73	87	-	-6.74286	8.59e-05	0.998	CGGGTCCTGTGGTCG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	90	103	+	4.54082	8.59e-05	0.377	TGGCCCGAGCCCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	90	103	+	4.54082	8.59e-05	0.377	TGGCCCGAGCCCAG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	65	74	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	65	74	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	80	89	-	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	104	113	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	104	113	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	104	113	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	104	113	+	10.6809	8.59e-05	0.139	TCCGGAAGCT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	32	49	+	-15.7763	8.6e-05	0.0548	GGAGGAAACTCAGCCAGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:113761711..113761825,-__1120.1.0.0	81	98	+	-15.7763	8.6e-05	0.0548	GAAAGCAGGGCTGCATGG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	66	83	-	-15.7763	8.6e-05	0.0548	GGAGGAAACTCAGCCAGG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	31	41	-	10.0345	8.6e-05	0.0257	GCACCCCCCCC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	18	27	-	11	8.6e-05	0.173	CACACGTGTT
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	44	53	+	11	8.6e-05	0.173	CACACGTGTT
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	51	60	+	11	8.6e-05	0.173	CACACGTGTT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	51	60	+	11	8.6e-05	0.173	CACACGTGTT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	105	114	+	11	8.6e-05	0.173	CACACGTGTT
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	105	114	+	11	8.6e-05	0.173	CACACGTGTT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	9	20	+	10.8909	8.6e-05	0.0579	TGCCCCCCGCCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	8	19	-	10.8909	8.6e-05	0.0579	TGCCCCCCGCCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	19	30	+	10.8909	8.6e-05	0.0579	ACCCCAGGGGCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	61	72	-	10.8909	8.6e-05	0.0579	CCCCCAAAGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	81	92	-	10.8909	8.6e-05	0.0579	CGCCTGCGGGGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	81	92	-	10.8909	8.6e-05	0.0579	CGCCTGCGGGGA
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	93	104	+	10.8909	8.6e-05	0.0579	ACCCCGGGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	96	107	+	10.8909	8.6e-05	0.0579	TGCCCCCCGCCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	85	96	-	10.8909	8.6e-05	0.0579	ACCCCAGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	85	96	-	10.8909	8.6e-05	0.0579	ACCCCAGGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	85	96	-	10.8909	8.6e-05	0.0579	ACCCCAGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	85	96	-	10.8909	8.6e-05	0.0579	ACCCCAGGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	91	102	-	10.8909	8.6e-05	0.0579	CGCCTCACGGCT
Nfe2l2	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	45	59	-	9.22727	8.6e-05	0.368	AGGCGTGAGCGAGCA
ZIC1	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	1	14	-	5.59574	8.6e-05	0.105	CCTCCCCCGCCGAG
ZIC1	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	46	59	+	5.59574	8.6e-05	0.105	CCTCCCCCGCCGAG
ZIC1	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	56	69	-	5.59574	8.6e-05	0.105	CCTCCCCCGCCGAG
ZIC1	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	101	114	+	5.59574	8.6e-05	0.105	CCTCCCCCGCCGAG
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	16	24	-	10.907	8.6e-05	0.54	AGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	16	24	-	10.907	8.6e-05	0.54	AGCAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	20	28	+	10.907	8.6e-05	0.54	AGCAGGTGA
SNAI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	20	28	+	10.907	8.6e-05	0.54	AGCAGGTGA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	82	96	-	10.4685	8.6e-05	0.19	GGGGGAAAAAAGGCA
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	9	20	-	10.4143	8.6e-05	0.225	CTCGCCCACAGG
Atf3	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	4	11	+	11.1311	8.6e-05	0.6	GATGACAT
Atf3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	32	39	+	11.1311	8.6e-05	0.6	GATGACAT
Atf3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	32	39	+	11.1311	8.6e-05	0.6	GATGACAT
Atf3	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	74	81	+	11.1311	8.6e-05	0.6	GATGACAT
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.1.0	2	9	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.0.0	2	9	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	12	19	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	12	19	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	12	19	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.2.1	20	27	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:51549473..51549587,+__1444.1.1.0	20	27	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__Enhancer.flip.sense__chr17:25821695..25821809,-__2061.1.0.0	15	22	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	23	30	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	23	30	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	21	28	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	21	28	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	23	30	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	42	49	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	49	56	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	49	56	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	49	56	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	49	56	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	43	50	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	49	56	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	49	56	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	60	67	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	60	67	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	65	72	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	66	73	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	59	66	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	73	80	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	67	74	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	73	80	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	73	80	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	76	83	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	85	92	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	FLIPPED__Enhancer.flip.antisense__chr17:25821695..25821809,+__2544.1.0.0	93	100	+	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	87	94	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	87	94	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	87	94	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	87	94	-	10.8649	8.6e-05	0.204	TGACGTCG
CREB1	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	96	103	+	10.8649	8.6e-05	0.204	TGACGTCG
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	17	24	-	10.4138	8.6e-05	0.822	AGGTGTGT
TBX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	17	24	-	10.4138	8.6e-05	0.822	AGGTGTGT
TBX5	WILDTYPE__Lincrna.noflip.NA__chr4:153021874..153021988,+__614.1.0.0	18	25	-	10.4138	8.6e-05	0.822	AGGTGTGT
Atf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	21	28	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	21	28	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	24	31	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	24	31	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	26	33	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	46	53	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	61	68	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	FLIPPED__Enhancer.flip.antisense__chr22:39350132..39350246,+__2588.1.0.0	75	82	-	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	92	99	-	11.4426	8.6e-05	0.377	ATGACGTG
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	8	15	+	10.4138	8.6e-05	0.822	AGGTGTGT
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	8	15	+	10.4138	8.6e-05	0.822	AGGTGTGT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	23	30	-	11.1311	8.6e-05	0.6	GATGACAT
Atf3	WILDTYPE__Enhancer.noflip.NA__chr5:71643905..71644019,+__1913.1.0.0	28	35	-	11.1311	8.6e-05	0.6	GATGACAT
Atf3	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	34	41	-	11.1311	8.6e-05	0.6	GATGACAT
Atf3	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	104	111	-	11.1311	8.6e-05	0.6	GATGACAT
Atf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	33	40	+	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.0.0	33	40	+	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	49	56	+	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	82	89	+	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	82	89	+	11.4426	8.6e-05	0.377	ATGACGTG
Atf1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	84	91	+	11.4426	8.6e-05	0.377	ATGACGTG
GLIS3	WILDTYPE__mrna.flip.sense__chr19:12777521..12777635,-__1249.1.0.0	26	39	+	2.92424	8.6e-05	0.379	CGCCCCCCACCCCG
GLIS3	FLIPPED__mrna.flip.antisense__chr19:12777521..12777635,+__2527.1.0.0	76	89	-	2.92424	8.6e-05	0.379	CGCCCCCCACCCCG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	73	83	-	10.2586	8.6e-05	0.0512	CGGCGGGGGAC
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr14:62203529..62203643,+__1020.1.0.0	19	28	-	10.9293	8.6e-05	0.182	TGAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	20	29	-	10.9293	8.6e-05	0.182	CTAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	20	29	-	10.9293	8.6e-05	0.182	CTAGGGGAAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	49	58	+	10.9293	8.6e-05	0.182	CTAGGGGAAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	49	58	+	10.9293	8.6e-05	0.182	CTAGGGGAAG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	57	66	-	10.9293	8.6e-05	0.182	CTAGGGGAAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	86	95	+	10.9293	8.6e-05	0.182	CTAGGGGAAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	79	92	-	4.53061	8.6e-05	0.377	TGGCCGGGCGCCCG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	79	92	-	4.53061	8.6e-05	0.377	TGGCCGGGCGCCCG
ZIC3	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	14	28	+	7.47143	8.6e-05	0.123	CCCCCCCCGCGAGTC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:113499041..113499155,+__6.1.1.0	28	42	+	7.47143	8.6e-05	0.123	TACCACCCCCTGCCA
ZIC3	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	49	63	+	7.47143	8.6e-05	0.123	CCCCCCCCGCGAGTC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	66	80	+	7.47143	8.6e-05	0.123	TACCACCCCCTGCCA
ZIC3	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	52	66	-	7.47143	8.6e-05	0.123	CCCCCCCCGCGAGTC
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	72	86	+	7.47143	8.6e-05	0.123	CGCCCCCCCCCGCCC
ZIC3	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	87	101	-	7.47143	8.6e-05	0.123	CCCCCCCCGCGAGTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	57	71	-	9.77273	8.6e-05	0.125	CGCTCGCGCTCCCAG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	57	71	-	9.77273	8.6e-05	0.125	CGCTCGCGCTCCCAG
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	11.1829	8.61e-05	0.199	AACACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	11.1829	8.61e-05	0.199	AACACGTGCC
Mitf	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	8	17	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	11	20	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	11	20	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	12	21	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	12	21	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	12	21	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	12	21	-	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	30	39	+	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	30	39	+	10.551	8.61e-05	0.281	TATCACGAGA
Mitf	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	98	107	+	10.551	8.61e-05	0.281	TATCACGAGA
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	50	63	+	9.58621	8.61e-05	0.318	AGTCGCTTAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	50	63	+	9.58621	8.61e-05	0.318	AGTCGCTTAGCAAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	50	63	+	9.58621	8.61e-05	0.318	AGTCGCTTAGCAAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	50	63	+	9.58621	8.61e-05	0.318	AGTCGCTTAGCAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	50	63	+	9.58621	8.61e-05	0.318	AGTCGCTTAGCAAC
Vdr	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	56	71	+	3.18033	8.61e-05	0.843	GAGTGCGGAGGGGGCG
Vdr	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	56	71	+	3.18033	8.61e-05	0.843	GAGTGCGGAGGGGGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	44	53	-	10.4483	8.61e-05	0.152	ATCAGCTGCC
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	44	53	-	10.4483	8.61e-05	0.152	ATCAGCTGCC
RELA	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	6	15	+	8.84694	8.61e-05	0.264	GTGACTTCCC
Sox6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	97	106	-	11.0714	8.61e-05	0.878	CTTTTGTCCT
Sox6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	97	106	-	11.0714	8.61e-05	0.878	CTTTTGTCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	19	38	+	2.91743	8.61e-05	0.073	GCCCCCACCCCACCCTCAGG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	19	38	+	2.91743	8.61e-05	0.073	GCCCCCACCCCACCCTCAGG
NFIL3	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	95	105	+	10.6364	8.61e-05	1	TGATGTAACTG
NFIL3	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	10	20	-	10.6364	8.61e-05	1	TGATGTAACTG
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	9	25	+	2.90909	8.61e-05	0.0337	CAAGCTCAGCCCATCCC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	9	25	+	2.90909	8.61e-05	0.0337	CAAGCTCAGCCCATCCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	14	30	+	2.90909	8.61e-05	0.0337	CCCGCCCCGCCGCTCTC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	14	30	+	2.90909	8.61e-05	0.0337	CCCGCCCCGCCGCTCTC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	28	44	+	2.90909	8.61e-05	0.0337	CTGGCTCCGGCCCCGGT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	31	47	+	2.90909	8.61e-05	0.0337	CAGCCCACGCCTCCGGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	31	47	+	2.90909	8.61e-05	0.0337	CAGCCCACGCCTCCGGG
Hmx1	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	61	77	+	10.4634	8.61e-05	1	GTGAGCAATCAACTGTT
Hmx1	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	38	54	-	10.4634	8.61e-05	1	GTGAGCAATCAACTGTT
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	17	28	+	10.8387	8.61e-05	0.281	TGGACCACCCCC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	17	28	+	10.8387	8.61e-05	0.281	TGGACCACCCCC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	44	55	-	10.8387	8.61e-05	0.281	GGACCCACCGCC
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	78	89	+	10.8387	8.61e-05	0.281	CCAACCACCAGC
RFX2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	96	111	-	5.22857	8.62e-05	0.447	CATTGTCATGGTTATT
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	96	111	-	5.22857	8.62e-05	0.447	CATTGTCATGGTTATT
RFX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	96	111	-	5.22857	8.62e-05	0.447	CATTGTCATGGTTATT
RFX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	96	111	-	5.22857	8.62e-05	0.447	CATTGTCATGGTTATT
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	84	98	-	9.86207	8.62e-05	0.0179	GGTCCACCCTCTCTG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	1	12	+	9.70492	8.62e-05	0.144	CTCCCGGAACTG
EHF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	1	12	+	9.70492	8.62e-05	0.144	CTCCCGGAACTG
EHF	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	32	-	9.70492	8.62e-05	0.144	GAACCGGAAGAG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	39	-	9.70492	8.62e-05	0.144	GAACCGGAAGAG
EHF	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	92	103	-	9.70492	8.62e-05	0.144	CACCAGGAAGCC
SOX8	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	72	87	-	-14.1061	8.62e-05	1	AAAAATGTGAAGTTTC
EGR3	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	32	46	+	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	29	43	-	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
EGR3	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	40	54	-	5.60345	8.62e-05	0.0418	GGCCACCCAGGCAAC
EGR3	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	61	75	+	5.60345	8.62e-05	0.0418	GGCCACCCAGGCAAC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	69	83	-	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	69	83	-	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	69	83	-	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	69	83	-	5.60345	8.62e-05	0.0418	CCCCGCCTCCTCCCC
MLXIPL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	11.1667	8.62e-05	0.297	AGCACGTGGA
MLXIPL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	11.1667	8.62e-05	0.297	AGCACGTGGA
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	6	20	-	9.01515	8.62e-05	0.355	CCTGTTTCAGCTTCT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	21	35	+	9.01515	8.62e-05	0.355	CCTGTTTCAGCTTCT
Twist2	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	24	33	+	11.459	8.62e-05	1	AACATGTGTT
Twist2	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	57	66	-	11.459	8.62e-05	1	AACATGTGTT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	36	48	-	9.7377	8.62e-05	0.0589	CGCCCAGGAGGCG
MAFK	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	88	102	+	10.6222	8.62e-05	1	CTTGGTCATCAAACT
MAFK	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	89	103	+	10.6222	8.62e-05	1	CTTGGTCATCAAACT
MAFK	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	12	26	-	10.6222	8.62e-05	1	CTTGGTCATCAAACT
MAFK	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	13	27	-	10.6222	8.62e-05	1	CTTGGTCATCAAACT
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	39	50	-	10.8491	8.62e-05	1	GGTTGCATAATG
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	39	50	-	10.8491	8.62e-05	1	GGTTGCATAATG
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	79	92	+	2.21951	8.62e-05	0.51	CAGTGCAAAGTGCA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	79	92	+	2.21951	8.62e-05	0.51	CAGTGCAAAGTGCA
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	1	10	+	10.8846	8.62e-05	0.122	TCAGGAAGTG
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	1	10	+	10.8846	8.62e-05	0.122	TCAGGAAGTG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	22	31	+	10.8846	8.62e-05	0.122	TCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	69	78	+	10.8846	8.62e-05	0.122	CGCGGAAATT
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	69	78	+	10.8846	8.62e-05	0.122	CGCGGAAATT
ETV6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	69	78	+	10.8846	8.62e-05	0.122	CGCGGAAATT
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	69	78	+	10.8846	8.62e-05	0.122	CGCGGAAATT
ETV6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	81	90	-	10.8846	8.62e-05	0.122	TCAGGAAGTG
ETV6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	81	90	-	10.8846	8.62e-05	0.122	TCAGGAAGTG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	39	50	+	10.8163	8.62e-05	0.0876	GACCCTGGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	47	-	10.8163	8.62e-05	0.0876	GACCCTGGGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	47	-	10.8163	8.62e-05	0.0876	GACCCTGGGGCA
STAT1	WILDTYPE__Enhancer.noflip.NA__chr14:69199938..69200052,+__1864.1.0.0	73	83	-	9.89091	8.62e-05	0.415	ATGCTGGGAAA
STAT1	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	64	74	+	9.89091	8.62e-05	0.415	ATGCTGGGAAA
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	81	91	+	9.89091	8.62e-05	0.415	GTGCTGGGAAT
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	81	91	+	9.89091	8.62e-05	0.415	GTGCTGGGAAT
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	17	31	-	9.91489	8.62e-05	0.368	TCCCATGACGTCAGA
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	17	31	-	9.91489	8.62e-05	0.368	TCCCATGACGTCAGA
Klf12	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	57	71	+	7.60656	8.62e-05	0.0731	GGTCCCGCCCCTTCC
Klf12	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	44	58	-	7.60656	8.62e-05	0.0731	GGTCCCGCCCCTTCC
Stat4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.1	60	73	+	10.7931	8.62e-05	0.366	CTTCCCGGAAGTGC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.1.0	60	73	+	10.7931	8.62e-05	0.366	CTTCCCGGAAGTGC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.2.0	60	73	+	10.7931	8.62e-05	0.366	CTTCCCGGAAGTGC
Stat4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.0.0	60	73	+	10.7931	8.62e-05	0.366	CTTCCCGGAAGTGC
Stat4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194304663..194304777,+__570.1.3.0	60	73	+	10.7931	8.62e-05	0.366	CTTCCCGGAAGTGC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	53	70	+	-15.7895	8.62e-05	0.0549	GGCCGGGAGGAGGGAGGC
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	65	74	+	11.2545	8.62e-05	0.751	CTTGCGTAAT
Gfi1b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.1.0	31	41	-	10.7414	8.62e-05	0.597	AAACCACAGGC
Gfi1b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:10836906..10837020,-__106.1.0.0	31	41	-	10.7414	8.62e-05	0.597	AAACCACAGGC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.0	10	20	+	10.3269	8.62e-05	0.0201	TTCCCGCCCTG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.1.1	10	20	+	10.3269	8.62e-05	0.0201	TTCCCGCCCTG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:30880958..30881072,-__1489.1.0.0	10	20	+	10.3269	8.62e-05	0.0201	TTCCCGCCCTG
SP1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	14	24	+	10.3269	8.62e-05	0.0201	TCCCCGCCTTG
SP1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	55	65	+	10.3269	8.62e-05	0.0201	TCCCCGCCTTG
SP1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	50	60	-	10.3269	8.62e-05	0.0201	TCCCCGCCTTG
SP1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	91	101	-	10.3269	8.62e-05	0.0201	TCCCCGCCTTG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	13	23	-	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	13	23	-	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	30	40	-	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	30	40	-	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	51	61	+	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	51	61	+	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	103	113	+	10.9574	8.62e-05	0.275	AGTGATTCACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	103	113	+	10.9574	8.62e-05	0.275	AGTGATTCACT
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	12	26	-	10.0081	8.63e-05	1	CTTTCATATGAAGAA
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	12	26	-	10.0081	8.63e-05	1	CTTTCATATGAAGAA
Pou5f1::Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	80	94	+	10.0081	8.63e-05	1	CTTTCATATGAAGAA
Pou5f1::Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	80	94	+	10.0081	8.63e-05	1	CTTTCATATGAAGAA
SOX21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	7	21	-	0.591837	8.63e-05	1	AACACTGTCACTGTC
SOX21	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	7	21	-	0.591837	8.63e-05	1	AACACTGTCACTGTC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	43	63	-	9.14286	8.63e-05	0.0224	GGGTGGGGGAGGAGGGAGGAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	48	68	-	9.14286	8.63e-05	0.0224	AAAGGCAGGAGGGGGTAGAAG
ZNF263	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	62	82	-	9.14286	8.63e-05	0.0224	GGGGGGGGTGGGACGTGGGGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	69	89	-	9.14286	8.63e-05	0.0224	GGAAGTAAGGAAAGAGGAAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	3	23	+	9.14286	8.63e-05	0.0224	GGAGCCGAGGAGGAGGAGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	33	53	+	9.14286	8.63e-05	0.0224	GGGGGGGGTGGGACGTGGGGG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	63	76	-	7.52459	8.63e-05	0.186	CACCCCCCTCCACT
GLIS2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	99	112	-	7.52459	8.63e-05	0.186	CCGCCCCCACGGCG
GLIS2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	3	16	+	7.52459	8.63e-05	0.186	CCGCCCCCACGGCG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	31	44	+	7.52459	8.63e-05	0.186	CCGCCCCCACGGCG
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	67	80	+	7.52459	8.63e-05	0.186	CCGCCCCCACGGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	69	82	+	7.52459	8.63e-05	0.186	CACCCCCCTCCACT
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	69	82	+	7.52459	8.63e-05	0.186	CACCCCCCTCCACT
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	32	45	+	8.13793	8.63e-05	0.0402	TGCCCCTCCCCTAT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	32	45	+	8.13793	8.63e-05	0.0402	TGCCCCTCCCCTAT
KLF14	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	32	45	+	8.13793	8.63e-05	0.0402	TGCCCCTCCCCTAT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	32	45	+	8.13793	8.63e-05	0.0402	TGCCCCTCCCCTAT
KLF14	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	70	83	-	8.13793	8.63e-05	0.0402	TGCCCCTCCCCTAT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	24	34	+	10.9655	8.63e-05	0.293	GAGTGTGGTTT
RUNX1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	37	47	-	10.9655	8.63e-05	0.293	CCCTGTGGTCC
RUNX1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	68	78	+	10.9655	8.63e-05	0.293	CCCTGTGGTCC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	12	22	-	10.2414	8.63e-05	0.0512	AGGCGCGAGCA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	12	22	-	10.2414	8.63e-05	0.0512	AGGCGCGAGCA
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	26	37	+	-0.75	8.63e-05	0.932	TGAGAGATGACA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.1.0	1	16	-	9.8	8.63e-05	0.0416	CTGCGCCCGCGCCCGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:51796427..51796541,+__1014.1.0.0	1	16	-	9.8	8.63e-05	0.0416	CTGCGCCCGCGCCCGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	2	17	-	9.8	8.63e-05	0.0416	TTCATCCCCCGCACTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.0.0	2	17	-	9.8	8.63e-05	0.0416	TTCATCCCCCGCACTC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	20	35	-	9.8	8.63e-05	0.0416	ACCCGGCCCCGCCCTG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	22	37	-	9.8	8.63e-05	0.0416	CCCCACCCACGTCCTG
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	22	37	-	9.8	8.63e-05	0.0416	CCCCACCCACGTCCTG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	22	37	-	9.8	8.63e-05	0.0416	CCCCACCCACGTCCTG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	24	39	-	9.8	8.63e-05	0.0416	CCCCGCCCCGGCCCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	24	39	-	9.8	8.63e-05	0.0416	CCCCGCCCCGGCCCCG
EGR4	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	47	62	+	9.8	8.63e-05	0.0416	CCACCCCCACGGCTCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	34	49	-	9.8	8.63e-05	0.0416	TTATGCCCACGGAGGT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	56	71	-	9.8	8.63e-05	0.0416	CCACCCCCACGGCTCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	76	91	+	9.8	8.63e-05	0.0416	CTCCGCCCCGGCCCGC
JDP2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	68	79	+	5.89796	8.63e-05	0.253	CGTGACGCCATC
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	72	83	+	5.89796	8.63e-05	0.253	CGTGACGCCATC
JDP2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	47	58	-	5.89796	8.63e-05	0.253	CGTGACGCCATC
RXRG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	72	85	-	0.808511	8.63e-05	0.496	CAGGGCAAAGTCCA
RXRG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	72	85	-	0.808511	8.63e-05	0.496	CAGGGCAAAGTCCA
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	7	19	-	9.27869	8.63e-05	0.0644	CGCCGCCAAGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	37	49	-	9.27869	8.63e-05	0.0644	CGCCCGGCCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	37	49	-	9.27869	8.63e-05	0.0644	CGCCCGGCCGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	43	55	-	9.27869	8.63e-05	0.0644	CGCCGCCAAGGCT
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	-	9.27869	8.63e-05	0.0644	GGCCGCGCGGGCG
HOXA2	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	+	10.2075	8.63e-05	1	CTTAATTACC
HOXA2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	-	10.2075	8.63e-05	1	CTTAATTACC
NRF1	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	36	46	+	9.4	8.63e-05	0.0236	GCCCCTGTGCC
EBF1	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	2	15	+	8.4918	8.63e-05	0.365	CCTCCCAGGGGCCC
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	22	36	+	8	8.63e-05	0.515	GTGAGTAAGCTCTCA
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	24	33	-	10.3269	8.63e-05	0.306	TACACGTGAT
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	92	104	+	9.1	8.63e-05	0.763	TGCACAGCTGTGC
Gabpa	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	12	22	-	10.377	8.64e-05	0.0771	GAGGAAGTGAG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	18	28	-	10.377	8.64e-05	0.0771	GAGGAAGTGAG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	18	28	-	10.377	8.64e-05	0.0771	GAGGAAGTGAG
Gabpa	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	72	82	+	10.377	8.64e-05	0.0771	GAGGAAGTGAG
Gabpa	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	93	103	+	10.377	8.64e-05	0.0771	GAGGAAGTGAG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	4	14	+	8.96552	8.64e-05	0.0862	AGGCCCACGTG
EGR2	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	42	52	+	8.96552	8.64e-05	0.0862	AGGCCCACGTG
NFKB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	10	22	+	1.22449	8.64e-05	0.261	GAGGGCATCCCCG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	10	22	+	1.22449	8.64e-05	0.261	GAGGGCATCCCCG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	29	40	+	9.86207	8.64e-05	0.33	CCGCCCACCCAC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	29	40	+	9.86207	8.64e-05	0.33	CCGCCCACCCAC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	24	33	+	10.8621	8.64e-05	0.126	GACGGAAGTT
ELK3	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	10.8621	8.64e-05	0.126	ACCGGAAACC
ELK3	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	82	91	-	10.8621	8.64e-05	0.126	GACGGAAGTT
ETV2	WILDTYPE__Enhancer.noflip.NA__chr1:121485152..121485266,-__2023.1.0.0	32	42	-	9.83607	8.64e-05	0.185	AAAAGGAAATA
ETV5	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	36	45	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	44	53	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	54	63	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	54	63	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	54	63	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	54	63	+	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	27	36	-	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	62	71	-	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	62	71	-	11	8.64e-05	0.134	ACCGGAACCG
ETV5	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	70	79	-	11	8.64e-05	0.134	ACCGGAACCG
KLF5	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	7	16	+	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	7	16	+	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	10	19	+	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.0.0	6	15	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.0	6	15	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.1.0	6	15	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49208964..49209078,+__1623.1.2.1	6	15	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	25	34	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	46	55	-	10.7347	8.64e-05	0.0276	GTTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	46	55	-	10.7347	8.64e-05	0.0276	GTTCCGCCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	46	55	-	10.7347	8.64e-05	0.0276	GTTCCGCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	46	55	-	10.7347	8.64e-05	0.0276	GTTCCGCCCC
KLF5	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	65	74	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	81	90	+	10.7347	8.64e-05	0.0276	CCCTCGCCCC
KLF5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	96	105	-	10.7347	8.64e-05	0.0276	CCCTCGCCCC
NEUROG2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	25	34	+	9.40909	8.64e-05	1	GACAGATGGT
SP3	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	12	22	-	10.6992	8.64e-05	0.0268	GACCCACCCCT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	18	38	+	8.33871	8.64e-05	0.189	GCCTTTTTTCCTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	70	90	+	8.33871	8.64e-05	0.189	TTCTTCTTTCACTCTGGTCTC
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	8	18	+	10.4828	8.64e-05	0.0814	GCGAGGGAACT
E2F6	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	54	64	+	10.4828	8.64e-05	0.0814	AAGAGGGAACC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	1	12	-	10.4079	8.64e-05	0.0381	GCCACTGCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	1	12	-	10.4079	8.64e-05	0.0381	GCCACTGCCACA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	14	25	-	10.4079	8.64e-05	0.0381	ACCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	14	25	-	10.4079	8.64e-05	0.0381	ACCCCGCCCCCG
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	65	76	+	10.4079	8.64e-05	0.0381	GCCACTGCCACA
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	65	76	+	10.4079	8.64e-05	0.0381	GCCACTGCCACA
SP8	WILDTYPE__mrna.noflip.NA__chr4:121843969..121844083,-__1081.1.0.0	68	79	+	10.4079	8.64e-05	0.0381	CCCGCGCCCCCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	8	22	-	9.87273	8.64e-05	0.112	CCGCCCCCGCCGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	8	22	-	9.87273	8.64e-05	0.112	CCGCCCCCGCCGGGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	8	22	-	9.87273	8.64e-05	0.112	CACCCCCTGGCGGCC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	8	22	-	9.87273	8.64e-05	0.112	CACCCCCTGGCGGCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	18	32	-	9.87273	8.64e-05	0.112	TCCACCCCAGTGTGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr9:132176104..132176218,+__2006.1.0.0	92	106	-	9.87273	8.64e-05	0.112	CAGGCCCCGCTGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	56	70	+	9.87273	8.64e-05	0.112	GGATCCCCGGGGCGC
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	20	33	-	4.81633	8.64e-05	0.0759	GGGGGGCAGGAGGA
PKNOX1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	51	62	+	1.61224	8.64e-05	1	AGACAGCTGTGT
SPIC	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	81	94	+	10.4507	8.64e-05	0.303	GTACACAGGAAGTC
Esrrg	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	7	16	-	10.5306	8.64e-05	1	TGGAGGTCAA
Esrrg	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	50	59	-	10.5306	8.64e-05	1	CCGAGGTCAA
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	36	46	-	10.8	8.65e-05	0.0759	TCGTTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	36	46	-	10.8	8.65e-05	0.0759	TCGTTTCCTGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	46	56	-	10.8	8.65e-05	0.0759	TCTCTTCCGGA
ELK4	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	69	79	+	10.8	8.65e-05	0.0759	TCGTTTCCTGC
SOX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	85	100	-	-14	8.65e-05	1	GAGCAATGTCAAGGTC
SOX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	85	100	-	-14	8.65e-05	1	GAGCAATGTCAAGGTG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	91	104	-	4.5102	8.65e-05	0.377	TGTCATCCTGCCAT
DBP	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	64	75	-	10.8302	8.65e-05	1	AATTACGCAAGG
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	101	114	+	9.14286	8.65e-05	0.308	GCGCCACGTCCCTT
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	101	114	+	9.14286	8.65e-05	0.308	GCGCCACGTCCCTT
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	38	53	+	10.3465	8.65e-05	1	CAGCATTTTTAATAAA
Ascl2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	-	10.5143	8.65e-05	0.247	CGCAGCTGTG
Ascl2	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	86	95	-	10.5143	8.65e-05	0.247	ACCTGCTGCT
Ascl2	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	47	56	+	10.5143	8.65e-05	0.247	ACCATCTGCT
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	55	64	+	10.5143	8.65e-05	0.247	ACCATCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	55	64	+	10.5143	8.65e-05	0.247	ACCATCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	+	10.5143	8.65e-05	0.247	CGCAGCTGTG
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	+	10.5143	8.65e-05	0.247	CGCAGCTGTG
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	+	10.5143	8.65e-05	0.247	CGCAGCTGTG
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	+	10.5143	8.65e-05	0.247	CGCAGCTGTG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	38	49	+	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	38	49	+	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	38	49	+	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	38	49	+	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	50	61	-	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	50	61	-	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	50	61	-	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	50	61	-	8.29091	8.65e-05	0.13	GCGCCGGAAGCC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	87	105	-	10.0806	8.65e-05	0.155	GCGGGCTGCCAGGCGGGGT
ZIC3	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	18	32	-	7.45714	8.65e-05	0.123	CCCCTCCCTCTGCTC
ZIC3	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	83	97	+	7.45714	8.65e-05	0.123	CCCCTCCCTCTGCTC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	55	67	-	10.2951	8.65e-05	0.359	GGGTCTGGCAGTT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	90	102	+	10.2951	8.65e-05	0.359	CCGCCTGGCAGCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	101	113	+	10.2951	8.65e-05	0.359	CCGCCTGGCAGCC
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	48	62	+	10.4595	8.65e-05	0.19	AGGGGTGAAGGGCCA
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	99	113	+	10.4595	8.65e-05	0.19	AGGGGTGAAGGGCCA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	2	16	-	10.4595	8.65e-05	0.19	AGGGGTGAAGGGCCA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	53	67	-	10.4595	8.65e-05	0.19	AGGGGTGAAGGGCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	2	12	-	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	29	39	+	10.0172	8.65e-05	0.0257	AGCCCTCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.0.0	35	45	+	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:42765220..42765334,-__529.1.1.0	35	45	+	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	27	37	-	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	36	46	-	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	47	57	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	47	57	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	50	60	+	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	51	61	+	10.0172	8.65e-05	0.0257	GGCGCGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	42	52	-	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	56	66	+	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	47	57	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	49	59	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	61	71	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	61	71	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	55	65	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	55	65	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	55	65	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	55	65	-	10.0172	8.65e-05	0.0257	GCCCCTCCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	69	79	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	69	79	+	10.0172	8.65e-05	0.0257	CCCCCTCCTCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	32	49	+	-15.8026	8.65e-05	0.055	GGAGGGGAGCTAGCAGTT
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	39	56	+	-15.8026	8.65e-05	0.055	GAAGGATGGGAAGGAGTT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:139871876..139871990,+__1268.1.0.0	90	107	-	-15.8026	8.65e-05	0.055	GAGAGCGAGGGAGGTGTG
MAX::MYC	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	107	-	9.85714	8.65e-05	0.366	TCTCACGTGGT
GLIS1	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	6	21	+	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	94	109	-	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	94	109	-	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	94	109	-	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	94	109	-	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	94	109	-	-10.7308	8.65e-05	0.329	CTACCCTCCGCGGACG
ELF4	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	40	51	+	8.47541	8.65e-05	0.122	GAACAGGAAGCG
CTCF	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	54	72	+	8.11475	8.65e-05	0.133	AGAGCTCAAGAGGGCAGGC
CTCF	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	43	61	-	8.11475	8.65e-05	0.133	AGAGCTCAAGAGGGCAGGC
RFX4	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	94	109	+	9.39394	8.65e-05	0.399	TGTCGCCATGGCCCCG
MAFG	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	43	63	+	9.30612	8.65e-05	1	CTCTCGCTGACTCCGCCCATC
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	52	72	-	9.30612	8.65e-05	1	CTCTCGCTGACTCCGCCCATC
MAFG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	52	72	-	9.30612	8.65e-05	1	CTCTCGCTGACTCCGCCCATC
MAFG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	52	72	-	9.30612	8.65e-05	1	CTCTCGCTGACTCCGCCCATC
MAFG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	52	72	-	9.30612	8.65e-05	1	CTCTCGCTGACTCCGCCCATC
MAFG	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	91	111	-	9.30612	8.65e-05	1	TAACCGCGGTGACAGCATTTC
SP4	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	5	21	+	2.89091	8.65e-05	0.0338	GCTACCACTCCCCTAAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	6	22	-	2.89091	8.65e-05	0.0338	TCCGCCCCGCCGCCCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	6	22	-	2.89091	8.65e-05	0.0338	TCCGCCCCGCCGCCCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	6	22	-	2.89091	8.65e-05	0.0338	TCCGCCCCGCCGCCCGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	59	75	-	2.89091	8.65e-05	0.0338	GGGGCCCCGGCCCCGGC
MLX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	61	70	+	9.55714	8.65e-05	0.332	AGCACGTGGA
MLX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	61	70	+	9.55714	8.65e-05	0.332	AGCACGTGGA
ELF3	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	24	36	+	7.58621	8.65e-05	0.184	TGGCCGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	79	91	-	7.58621	8.65e-05	0.184	TGGCCGGAAGTCA
ELF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	79	91	-	7.58621	8.65e-05	0.184	TGGCCGGAAGTCA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	70	81	+	10.8364	8.65e-05	0.0934	TGCCCTGGGGTT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	70	81	+	10.8364	8.65e-05	0.0934	TGCCCTGGGGTT
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	90	101	+	10.8364	8.65e-05	0.0934	CGGCTCGAGGCA
POU6F1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	11.1088	8.66e-05	1	TCTAATTAGT
POU6F1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	11.1088	8.66e-05	1	ACTAATTAGA
ZIC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	10	23	-	5.57447	8.66e-05	0.105	GCGCCCCCGGGGTG
ZIC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	10	23	-	5.57447	8.66e-05	0.105	GCGCCCCCGGGGTG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	68	81	-	5.57447	8.66e-05	0.105	TGGCCCACGCTGTG
Hand1::Tcf3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	33	42	-	11.1461	8.66e-05	0.983	TGTCTGGAAA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	39	51	+	9.17241	8.66e-05	0.0578	CGCCGCCAGGGGC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	64	76	-	9.17241	8.66e-05	0.0578	CGCCGCCAGGGGC
E2F6	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	59	69	-	10.4655	8.66e-05	0.0815	TGGAGGGAGCT
MEF2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	14	25	-	5.92727	8.66e-05	1	GTTAAATATAGA
MEF2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	14	25	-	5.92727	8.66e-05	1	GTTAAATATAGA
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	95	111	+	-3.48485	8.66e-05	0.861	AGGGCATGGAAAGGACA
FOSL1	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	27	37	+	9.92727	8.66e-05	0.251	TTTGAGTCAGG
FOSL1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	67	77	+	9.92727	8.66e-05	0.251	TTTGAGTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	67	77	+	9.92727	8.66e-05	0.251	TTTGAGTCAGG
RUNX1	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	34	44	-	10.9483	8.66e-05	0.293	CCCTGTGGGTG
RUNX1	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	71	81	+	10.9483	8.66e-05	0.293	CCCTGTGGGTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	93	103	-	10.9483	8.66e-05	0.293	CCCTGTGGGTG
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	93	103	-	10.9483	8.66e-05	0.293	CCCTGTGGGTG
SPDEF	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	7	17	+	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	14	24	+	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	17	27	+	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	59	69	+	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	76	86	+	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	29	39	-	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	38	48	-	9.67273	8.66e-05	0.269	ACCCGGACGCC
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	38	48	-	9.67273	8.66e-05	0.269	ACCCGGACGCC
SPDEF	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	46	56	-	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE__mrna.noflip.NA__chr12:94071074..94071188,+__1329.1.0.0	56	66	-	9.67273	8.66e-05	0.269	AACAGGAAGTG
SPDEF	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	88	98	-	9.67273	8.66e-05	0.269	AACAGGAAGTG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	1	15	+	9.75758	8.66e-05	0.125	CTCGCGCGCTATCCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	1	15	+	9.75758	8.66e-05	0.125	CTCGCGCGCTATCCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	1	15	+	9.75758	8.66e-05	0.125	CTCGCGCGCTATCCC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	1	15	+	9.75758	8.66e-05	0.125	CTCGCGCGCTATCCC
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	1	15	+	9.75758	8.66e-05	0.125	CTCGCGCGCTATCCC
ESR1	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	31	47	+	-1.31818	8.67e-05	0.514	TGGGGCGGGGCGAGCTC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	24	34	+	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	24	34	+	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	24	34	+	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	24	34	+	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	36	46	+	10.4909	8.67e-05	0.0718	TCCCTCGGGCT
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	64	74	+	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	82	92	+	10.4909	8.67e-05	0.0718	CGCCTCAAGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	17	27	-	10.4909	8.67e-05	0.0718	CCCCGCAGGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	1	14	+	9.73077	8.67e-05	0.0299	CTCCAGCCCTCGCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	27	40	+	9.73077	8.67e-05	0.0299	CTCCCACCGCCAGA
EGR1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	30	43	-	9.73077	8.67e-05	0.0299	GTCCCTCCCTCTCT
EGR1	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	55	68	+	9.73077	8.67e-05	0.0299	GCACCGCTCACGGC
EGR1	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	47	60	-	9.73077	8.67e-05	0.0299	GCACCGCTCACGGC
PPARG	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	18	37	+	6.38889	8.67e-05	1	GTGGGTCACCTAGCCCCTCC
PPARG	WILDTYPE__Enhancer.noflip.NA__chr14:103585499..103585613,+__1861.1.0.0	45	64	-	6.38889	8.67e-05	1	GTGGGTCACCTAGCCCCTCC
EGR3	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	25	39	+	5.58621	8.67e-05	0.0418	GACCGGCCCCGCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	37	51	-	5.58621	8.67e-05	0.0418	TTCCCCCCACCCCCT
EGR3	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	76	90	-	5.58621	8.67e-05	0.0418	GACCGGCCCCGCCCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	93	107	-	5.58621	8.67e-05	0.0418	TTCCGCCTCCACCTT
E2F1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	5	16	-	10.5082	8.67e-05	0.45	AATCGCGCCACA
E2F1	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	90	101	-	10.5082	8.67e-05	0.45	TGTGGCGCTACA
Myog	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	67	77	+	11.1633	8.67e-05	0.186	AGCAGCTGTTT
Myog	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	83	93	+	11.1633	8.67e-05	0.186	AGCAGCTGTTT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	91	103	+	9.72131	8.67e-05	0.0589	GGCCTTGGAGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	87	99	-	9.72131	8.67e-05	0.0589	TGCCAGGCGGGGT
HEY2	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	50	-	10.5172	8.67e-05	0.222	ACCACGTGTC
HEY2	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	65	74	+	10.5172	8.67e-05	0.222	ACCACGTGTC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	10.8367	8.67e-05	0.165	ATCACGTGCA
EHF	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	46	57	+	9.68852	8.67e-05	0.145	GAAGCGGAAGCA
SMAD3	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	40	49	-	8.94545	8.67e-05	1	CGTCCAGACG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	29	46	+	8.53659	8.67e-05	0.224	CCTCTCCTTATTGGCTCC
ZBTB18	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	28	40	-	9.08571	8.67e-05	0.763	TGCACAGCTGTTT
TFAP2C	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	19	30	+	10.8061	8.67e-05	0.0876	CCGCCTCGGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	47	58	+	10.8061	8.67e-05	0.0876	TCCCTGAGGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	47	58	+	10.8061	8.67e-05	0.0876	TCCCTGAGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.0	83	94	-	10.8061	8.67e-05	0.0876	TGGCCAGAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	83	94	-	10.8061	8.67e-05	0.0876	TGGCCAGAGGCA
TFAP2C	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	96	-	10.8061	8.67e-05	0.0876	CCGCCTCGGGCA
CEBPD	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	6	15	+	10.9231	8.67e-05	0.805	CTTACGAAAC
HNF1A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	1	15	+	9.75325	8.67e-05	1	CATGAATAATTAATG
HNF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	1	15	+	9.75325	8.67e-05	1	CATGAATAATTAATG
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	1	15	+	9.75325	8.67e-05	1	CATGAATAATTAATG
HNF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	1	15	+	9.75325	8.67e-05	1	CATGAATAATTAATG
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	13	26	+	4.80612	8.67e-05	0.0759	GCGGGCCGCGGGGG
SRY	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	96	104	+	10.5	8.67e-05	1	GCAAACAAT
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	13	27	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
FOXP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	13	27	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	18	32	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
FOXP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	18	32	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	23	37	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	54	68	-	10.5634	8.67e-05	0.377	AAAAAAAAAAGAAAA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.1	5	14	+	11.1552	8.67e-05	0.127	TCCGGAAGGA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	29	38	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	42	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	42	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	42	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	42	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	46	55	+	11.1552	8.67e-05	0.127	TCCGGAAGGA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	46	55	+	11.1552	8.67e-05	0.127	TCCGGAAGGA
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	50	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	50	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.0.0	62	71	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.0	62	71	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.1552	8.67e-05	0.127	CCCGGAAGCG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:46958249..46958363,+__1464.1.1.1	62	71	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	54	63	-	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	66	75	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
ETV4	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	88	97	+	11.1552	8.67e-05	0.127	TCCGGAAGCC
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	62	82	-	4.42857	8.68e-05	0.236	GAGAGCGCGCTGGAGAGCGCA
REST	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	62	82	-	4.42857	8.68e-05	0.236	GAGAGCGCGCTGGAGAGCGCA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	62	82	-	4.42857	8.68e-05	0.236	GAGAGCGCGCTGGAGAGCGCA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	62	82	-	4.42857	8.68e-05	0.236	GAGAGCGCGCTGGAGAGCGCA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	62	82	-	4.42857	8.68e-05	0.236	GAGAGCGCGCTGGAGAGCGCA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	27	41	+	7.59016	8.68e-05	0.0731	GGCTCCGCCCTCATG
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	27	41	+	7.59016	8.68e-05	0.0731	GGCTCCGCCCTCATG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	27	41	+	7.59016	8.68e-05	0.0731	GGCTCCGCCCTCATG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	41	55	+	7.59016	8.68e-05	0.0731	GGTCCCGCCCTCGTG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	41	55	+	7.59016	8.68e-05	0.0731	GGTCCCGCCCTCGTG
Klf12	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	74	88	-	7.59016	8.68e-05	0.0731	GGCTCCGCCCTCATG
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	7	16	+	11.4494	8.68e-05	0.973	ATGTGGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	7	16	+	11.4494	8.68e-05	0.973	ATGTGGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	27	36	-	11.4494	8.68e-05	0.973	ATGTGGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	27	36	-	11.4494	8.68e-05	0.973	ATGTGGGTCA
PKNOX2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	51	62	+	2.14754	8.68e-05	0.673	AGACAGCTGTGT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	21	34	-	7.5082	8.68e-05	0.186	TCCCCCACGCGGCA
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	87	100	-	7.5082	8.68e-05	0.186	GGGCCCCCACATGG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	13	26	+	7.5082	8.68e-05	0.186	CCCCCCCAGTGTTG
Ar	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	+	5.84483	8.68e-05	0.882	GTGTACTGGATGTTCTC
Ar	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	+	5.84483	8.68e-05	0.882	GTGTACTGGATGTTCTC
Ar	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	+	5.84483	8.68e-05	0.882	GTGTACTGGATGTTCTC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	+	10.8727	8.68e-05	0.0579	TGCCCGGGGGGC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	+	10.8727	8.68e-05	0.0579	CGCCCTAGGGGC
SP2	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	6	20	+	9.84483	8.68e-05	0.0179	CCTCCTCCCCACACC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	14	28	+	9.84483	8.68e-05	0.0179	ACTCCTCCTCCGGCT
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	14	28	+	9.84483	8.68e-05	0.0179	ACTCCTCCTCCGGCT
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	14	28	+	9.84483	8.68e-05	0.0179	ACTCCTCCTCCGGCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	14	28	-	9.84483	8.68e-05	0.0179	TCTCCTCCCACCCCA
SP2	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	20	34	-	9.84483	8.68e-05	0.0179	CTTCCGCCCTGCGCG
SP2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	47	61	+	9.84483	8.68e-05	0.0179	TCACCTCCTCCCCCT
SP2	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	63	77	+	9.84483	8.68e-05	0.0179	CTTCCGCCCTGCGCG
SP2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	54	68	-	9.84483	8.68e-05	0.0179	TCACCTCCTCCCCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	59	73	-	9.84483	8.68e-05	0.0179	CCCCCACCCCGGCAT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	59	73	-	9.84483	8.68e-05	0.0179	CCCCCACCCCGGCAT
SP2	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	81	95	+	9.84483	8.68e-05	0.0179	CTTCCGCCCTGCGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	74	88	-	9.84483	8.68e-05	0.0179	GCCGCTCCTCCTGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	95	109	-	9.84483	8.68e-05	0.0179	CCTCCACCTCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	95	109	-	9.84483	8.68e-05	0.0179	CCTCCACCTCCAGGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	95	109	-	9.84483	8.68e-05	0.0179	CCTCCACCTCCAGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	95	109	-	9.84483	8.68e-05	0.0179	CCTCCACCTCCAGGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	95	109	-	9.84483	8.68e-05	0.0179	CCTCCACCTCCAGGC
SP2	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	95	109	-	9.84483	8.68e-05	0.0179	CCTCCTCCCCACACC
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	3	16	+	8.12069	8.68e-05	0.0403	GGCCCCGCCCCAGG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	3	16	+	8.12069	8.68e-05	0.0403	GGCCCCGCCCCAGG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	8	21	-	8.12069	8.68e-05	0.0403	TGCCGCGCCCAGCA
KLF14	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	92	105	+	8.12069	8.68e-05	0.0403	TGCCGCGCCCAGCA
KLF14	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	99	112	-	8.12069	8.68e-05	0.0403	GGCCCCGCCCCAGG
NR1H2::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	62	78	+	-6.37079	8.68e-05	1	GGGGGTCGAAGGGCACG
NR1H2::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	62	78	+	-6.37079	8.68e-05	1	GGGGGTCGAAGGGCACG
Alx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	1	17	-	10.6104	8.68e-05	1	CACATTAATTATTCATG
Alx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	1	17	-	10.6104	8.68e-05	1	CACATTAATTATTCATG
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	34	48	+	9.89362	8.68e-05	0.368	CGCCGTGACGTCACG
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	67	81	-	9.89362	8.68e-05	0.368	CGCCGTGACGTCACG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	1	11	-	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	1	11	-	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	1	11	-	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	1	11	-	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	36	46	+	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	69	79	-	9.90909	8.68e-05	0.251	CCTGACTCATG
FOSL1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	104	114	+	9.90909	8.68e-05	0.251	CCTGACTCATG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	87	99	-	9.2623	8.68e-05	0.0644	CGCCGGAAGGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	87	99	-	9.2623	8.68e-05	0.0644	CGCCGGAAGGGCA
NFATC3	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	8	17	+	10.798	8.68e-05	1	AGTTTCCATA
ELF5	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	86	96	+	11.0364	8.68e-05	0.159	ACAAGGAAATG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	3	13	-	11.0364	8.68e-05	0.159	TCCAGGAAATG
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	12	23	-	10.3947	8.68e-05	0.0382	CCCCCACCCCTT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	12	23	-	10.3947	8.68e-05	0.0382	CCCCCACCCCTT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	12	23	-	10.3947	8.68e-05	0.0382	CCCCCACCCCTT
ZBED1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.1.0	11	23	+	5.10909	8.68e-05	1	TTCTCGCGATAGT
ZBED1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:34041504..34041618,-__628.1.0.0	11	23	+	5.10909	8.68e-05	1	TTCTCGCGATAGT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	10	19	+	10.2202	8.68e-05	0.0553	CACCCCCCCA
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	10	19	+	10.2202	8.68e-05	0.0553	CACCCCCCCA
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	75	84	-	10.2202	8.68e-05	0.0553	CACCCCCCCA
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	75	84	-	10.2202	8.68e-05	0.0553	CACCCCCCCA
ELK4	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	91	101	+	10.7818	8.68e-05	0.0762	GGGCTTCCTGG
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	5	14	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	5	14	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	5	14	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	5	14	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	33	42	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	33	42	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	33	42	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	33	42	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	33	42	-	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	44	53	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	44	53	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	44	53	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	44	53	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	58	67	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	58	67	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	58	67	+	10.7561	8.68e-05	0.472	CTCACCCAAT
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	58	67	+	10.7561	8.68e-05	0.472	CTCACCCAAT
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	84	98	+	6.56579	8.69e-05	0.284	ACGGTGAGGAAGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	84	98	+	6.56579	8.69e-05	0.284	ACGGTGAGGAAGCCC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.0	67	77	-	11.1207	8.69e-05	0.902	TGTTGTTTCCT
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.0.0	67	77	-	11.1207	8.69e-05	0.902	TGTTGTTTCCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	5	15	+	10.9273	8.69e-05	0.0554	AGCCCCACGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	5	15	+	10.9273	8.69e-05	0.0554	AGCCCCACGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	5	15	+	10.9273	8.69e-05	0.0554	AGCCCCACGCA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	5	15	+	10.9273	8.69e-05	0.0554	AGCCCCACGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	5	15	+	10.9273	8.69e-05	0.0554	AGCCCCACGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	40	50	+	10.9273	8.69e-05	0.0554	AGCCCACGGCT
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	40	50	+	10.9273	8.69e-05	0.0554	AGCCCACGGCT
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	57	67	+	10.9273	8.69e-05	0.0554	AGCCGGCGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	57	67	+	10.9273	8.69e-05	0.0554	AGCCGGCGGCC
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	91	101	+	10.9273	8.69e-05	0.0554	AGCCCACGGCT
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	99	109	+	10.9273	8.69e-05	0.0554	CGCCCAGGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	99	109	+	10.9273	8.69e-05	0.0554	CGCCCAGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	99	109	+	10.9273	8.69e-05	0.0554	CGCCCAGGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	99	109	+	10.9273	8.69e-05	0.0554	CGCCCAGGGCG
Vdr	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	88	103	+	3.14754	8.69e-05	0.843	GGTTTCAGCGAGTTCT
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	68	80	+	10.7195	8.69e-05	1	TGTGTGTGAAAAG
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	68	80	+	10.7195	8.69e-05	1	TGTGTGTGAAAAG
EOMES	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	40	52	-	10.7195	8.69e-05	1	TGTGTGTGAAAAG
EOMES	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	40	52	-	10.7195	8.69e-05	1	TGTGTGTGAAAAG
ISL2	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	21	28	+	10.2655	8.69e-05	1	CCACTTAG
ISL2	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	87	94	-	10.2655	8.69e-05	1	CCACTTAG
BSX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	19	26	-	10.1509	8.69e-05	1	CCCATTAC
BSX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	19	26	-	10.1509	8.69e-05	1	CCCATTAC
BSX	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	84	91	+	10.1509	8.69e-05	1	CCCATTAC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	4	14	+	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	32	42	-	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	41	51	-	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	54	64	+	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	51	61	-	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	64	74	+	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
SP1	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	73	83	+	10.3077	8.69e-05	0.0203	CTCCCTCCTTC
Zfx	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	8	21	+	10.1818	8.69e-05	0.0682	GGGGCCGGGTCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	24	37	-	10.1818	8.69e-05	0.0682	CCGGCCGCGGCCCC
Zfx	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	78	91	+	10.1818	8.69e-05	0.0682	CCGGCCGCGGCCCC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	78	91	+	10.1818	8.69e-05	0.0682	CCGGCCGCGGCCCC
Zfx	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	94	107	-	10.1818	8.69e-05	0.0682	GGGGCCGGGTCCTG
NKX2-8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	50	58	-	10.7885	8.69e-05	1	GCACTTAAA
NKX2-8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	50	58	-	10.7885	8.69e-05	1	GCACTTAAA
NR3C2	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	63	79	-	4.08511	8.69e-05	1	GCGGACAGGAAGTCCCA
MYBL1	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	47	58	-	9.32759	8.69e-05	1	AAAGTTAACTCT
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr4:165798250..165798364,+__616.1.0.0	30	43	+	4.79592	8.69e-05	0.0759	GAGGCTGAGGGAGG
Crem	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	76	85	-	11.541	8.69e-05	0.327	GGTGACGTCG
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	24	34	+	11.0816	8.69e-05	0.842	CTTGCATCATC
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	75	85	-	11.0816	8.69e-05	0.842	CTTGCATCATC
HSF1	WILDTYPE__Lincrna.noflip.NA__chr8:90769535..90769649,-__874.1.0.0	3	15	+	6.22951	8.69e-05	1	TTCCGGAAGTTGC
RARA	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	15	32	-	-10.7879	8.69e-05	1	AAGGCCATGGGGCCAGGT
XBP1	FLIPPED__mrna.flip.antisense__chr7:124570002..124570116,+__2521.1.0.0	38	51	+	9.21154	8.69e-05	0.529	GATGCGACGTCAAC
XBP1	WILDTYPE__mrna.flip.sense__chr7:124570002..124570116,-__1219.1.0.0	64	77	-	9.21154	8.69e-05	0.529	GATGCGACGTCAAC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	50	61	-	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	50	61	-	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	73	84	-	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	102	113	-	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	2	13	+	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	2	13	+	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	31	42	+	9.84483	8.69e-05	0.33	GCGCCCACGCCC
GLI2	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	54	65	+	9.84483	8.69e-05	0.33	GCGCCCACGCCC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	29	47	+	10.1774	8.69e-05	0.674	CGCCCTCAGGTGGCATCAG
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	29	47	+	10.1774	8.69e-05	0.674	CGCCCTCAGGTGGCATCAG
Stat5a::Stat5b	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	49	59	+	11.0204	8.69e-05	0.4	AGTTCCAGGAG
Stat5a::Stat5b	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	56	66	-	11.0204	8.69e-05	0.4	AGTTCCAGGAG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	87	97	-	11.0204	8.69e-05	0.4	AGTTCCAGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	87	97	-	11.0204	8.69e-05	0.4	AGTTCCAGGAG
SP4	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	44	60	-	2.87273	8.69e-05	0.0339	CCCGCCCCTCCCCACCC
NFIL3	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	85	95	+	10.6263	8.69e-05	1	TGATGTAAGTT
NFIL3	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	8	18	-	10.6263	8.69e-05	1	TGATGTAAGTT
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	95	109	+	8.77143	8.69e-05	0.122	CAGGGGCAGAGTGAG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	66	78	+	9.15517	8.69e-05	0.0578	CGCCTGGCGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	66	78	+	9.15517	8.69e-05	0.0578	CGCCTGGCGGGGG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	71	87	+	-1.33333	8.69e-05	0.514	AGGGTCACCACTGCCTG
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	71	87	+	-1.33333	8.69e-05	0.514	AGGGTCACCACTGCCTG
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	71	87	+	-1.33333	8.69e-05	0.514	AGGGTCACCACTGCCTG
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	74	90	+	-1.33333	8.69e-05	0.514	GGGGCAACTGTGACCTC
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	74	90	+	-1.33333	8.69e-05	0.514	GGGGCAACTGTGACCTC
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	24	40	-	-1.33333	8.69e-05	0.514	GGGGCAACTGTGACCTC
ESR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	24	40	-	-1.33333	8.69e-05	0.514	GGGGCAACTGTGACCTC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	56	76	+	8.32258	8.69e-05	0.189	AGAGGTTTCCACTTTTGCTTC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	56	76	+	8.32258	8.69e-05	0.189	AGAGGTTTCCACTTTTGCTTC
E2F6	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	35	45	-	10.4483	8.7e-05	0.0817	TAGAGGGAGGA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	27	41	+	-6.8	8.7e-05	0.998	GAGAGTTTAAGGTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	27	41	+	-6.8	8.7e-05	0.998	GAGAGTTTAAGGTCA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	47	61	+	-6.8	8.7e-05	0.998	GAGAGTTTAAGGTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	47	61	+	-6.8	8.7e-05	0.998	GAGAGTTTAAGGTCA
TFEC	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	19	28	-	11.1707	8.7e-05	0.199	CTCACATGAG
TFEC	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	87	96	+	11.1707	8.7e-05	0.199	CTCACATGAG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	103	112	-	11.1707	8.7e-05	0.199	CTCACATGAG
ZIC3	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	51	65	+	7.44286	8.7e-05	0.123	CACTCCCTCCGGGGC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	17	27	-	10.4898	8.7e-05	0.237	ATCACGTGGCA
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	17	27	-	10.4898	8.7e-05	0.237	ATCACGTGGCA
FOXC1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	20	30	-	11.08	8.7e-05	1	AAAGAAAATAT
FOXC1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	20	30	-	11.08	8.7e-05	1	AAAGAAAATAT
HES5	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	18	29	-	1.62069	8.7e-05	0.298	GCCCACGTGTCA
HES5	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	19	30	-	1.62069	8.7e-05	0.298	GCCCACGTGTCA
Tcf12	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	26	36	-	11.0408	8.7e-05	0.202	CGCAGCTGGCT
Tcf12	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	29	+	11.0408	8.7e-05	0.202	CGCAGCTGGCT
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	89	+	11.0408	8.7e-05	0.202	CGCAGCTGGCT
Tcf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	89	+	11.0408	8.7e-05	0.202	CGCAGCTGGCT
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	28	42	-	10.4505	8.7e-05	0.19	CGGGGTCAGAAGTCG
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	34	53	+	6.37778	8.7e-05	1	TAAGGTCATCCTCTCTCAAA
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	54	73	+	6.37778	8.7e-05	1	TAAGGTCATCCTCTCTCAAA
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:62162524..62162638,-__295.1.0.0	15	25	-	10.7885	8.7e-05	0.0758	CGCCCTGGGCT
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	46	-	10.7885	8.7e-05	0.0758	GGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	63	73	+	10.7885	8.7e-05	0.0758	CGCCTCGAGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	64	74	+	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	64	74	+	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	64	74	+	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	56	66	-	10.7885	8.7e-05	0.0758	GGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	56	66	-	10.7885	8.7e-05	0.0758	GGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	69	79	+	10.7885	8.7e-05	0.0758	GGCCCCGGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	83	93	-	10.7885	8.7e-05	0.0758	CGCCGCAGGGG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	85	95	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	85	95	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	85	95	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	85	95	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	91	101	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	91	101	-	10.7885	8.7e-05	0.0758	CGCTCCAGGCG
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	53	66	-	8.12121	8.7e-05	0.462	AATGTCAAAGGATA
RELA	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	1	10	-	8.83673	8.7e-05	0.264	CTGAATTCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	105	114	+	8.83673	8.7e-05	0.264	CTGAATTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	105	114	+	8.83673	8.7e-05	0.264	CTGAATTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	105	114	+	8.83673	8.7e-05	0.264	CTGAATTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	105	114	+	8.83673	8.7e-05	0.264	CTGAATTCCC
RELA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	105	114	+	8.83673	8.7e-05	0.264	CTGAATTCCC
Sox6	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	84	93	+	11.0429	8.7e-05	0.878	GCTTTGTCTG
Sox6	WILDTYPE__Lincrna.noflip.NA__chr3:156799495..156799609,+__561.1.0.0	92	101	+	11.0429	8.7e-05	0.878	GCTTTGTCTG
CREB3	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	3	16	-	9.12857	8.7e-05	0.308	GTGGCACGTCTTCG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	99	112	+	9.12857	8.7e-05	0.308	GTGGCACGTCTTCG
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	99	112	+	9.12857	8.7e-05	0.308	GTGGCACGTCTTCG
CREB3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	99	112	+	9.12857	8.7e-05	0.308	GTGGCACGTCTTCG
CREB3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	99	112	+	9.12857	8.7e-05	0.308	GTGGCACGTCTTCG
EGR2	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	34	44	+	8.94828	8.7e-05	0.0862	CTGCCCGCGCA
EGR2	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	54	64	+	8.94828	8.7e-05	0.0862	CCGCCTGCGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	51	61	-	8.94828	8.7e-05	0.0862	CCGCCTGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	65	75	+	8.94828	8.7e-05	0.0862	CTGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	65	75	+	8.94828	8.7e-05	0.0862	CTGCCCGCGCA
EGR2	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	71	81	-	8.94828	8.7e-05	0.0862	CTGCCCGCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	88	98	-	8.94828	8.7e-05	0.0862	CCGCCTGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	88	98	-	8.94828	8.7e-05	0.0862	CCGCCTGCGCT
Nr2e1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	47	55	-	11.0968	8.7e-05	1	CTAAGTCAA
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	3	12	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	3	12	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.2.0	10	19	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	10	19	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.1	10	19	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.1.0	10	19	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.3.0	10	19	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	20	29	+	9.70213	8.7e-05	0.108	TCCGGAAGGG
ELK1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	39	48	+	9.70213	8.7e-05	0.108	TCCGGAAGGG
ELK1	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	44	53	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	46	55	+	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	62	71	-	9.70213	8.7e-05	0.108	CCCGGAACTG
ELK1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	67	76	-	9.70213	8.7e-05	0.108	TCCGGAAGGG
ELK1	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	90	99	+	9.70213	8.7e-05	0.108	CCCGGAACTG
Mecom	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	93	106	-	7.70787	8.7e-05	1	TAGACAGGACTAGC
Mecom	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	93	106	-	7.70787	8.7e-05	1	TAGACAGGACTAGC
Mecom	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	93	106	-	7.70787	8.7e-05	1	TAGACAGGACTAGC
Mecom	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	93	106	-	7.70787	8.7e-05	1	TAGACAGGACTAGC
Mecom	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	93	106	-	7.70787	8.7e-05	1	TAGACAGGACTAGC
Phox2b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	8	18	+	10.7447	8.7e-05	1	CAATCAAATTA
Phox2b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	8	18	+	10.7447	8.7e-05	1	CAATCAAATTA
Phox2b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	8	18	+	10.7447	8.7e-05	1	CAATCAAATTA
Phox2b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	8	18	+	10.7447	8.7e-05	1	CAATCAAATTA
ZNF143	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	90	105	-	0.37931	8.7e-05	0.462	TACCCACCGAGCCAAA
ZNF143	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	90	105	-	0.37931	8.7e-05	0.462	TACCCACCGAGCCAAA
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	93	108	-	0.37931	8.7e-05	0.462	CACCCTTAATCCTCTT
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	93	108	-	0.37931	8.7e-05	0.462	CACCCTTAATCCTCTT
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr20:48892778..48892892,+__481.1.0.0	64	77	-	2.87879	8.71e-05	0.381	CATCCCCCTCATAG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	66	85	-	2.88073	8.71e-05	0.0733	CAGCACAACAGCCACAGCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	66	85	-	2.88073	8.71e-05	0.0733	CAGCACAACAGCCACAGCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	39	58	+	2.88073	8.71e-05	0.0733	CAGCACAACAGCCACAGCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	39	58	+	2.88073	8.71e-05	0.0733	CAGCACAACAGCCACAGCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	82	101	+	2.88073	8.71e-05	0.0733	ACACACACCAGCCCAGCCAG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	82	101	+	2.88073	8.71e-05	0.0733	ACACACACCAGCCCAGCCAG
Tcf21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	78	91	+	5.47368	8.71e-05	0.568	CCACCCGCTGGTCC
Tcf21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	78	91	+	5.47368	8.71e-05	0.568	CCACCCGCTGGTCC
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	39	59	-	4.41837	8.71e-05	0.236	TGCCGCAGTGCGGACAGCGAG
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	39	59	-	4.41837	8.71e-05	0.236	TGCCGCAGTGCGGACAGCGAG
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	30	44	+	10.3276	8.71e-05	0.834	CTCTTCCTGGAAACC
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	56	70	+	10.3276	8.71e-05	0.834	CTCTTCCTGGAAACC
SCRT2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	47	59	+	5.90164	8.71e-05	1	TGGCAAGAGGTGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	67	84	-	-15.8289	8.71e-05	0.0551	GAGAGGAAGTTAGGCGGC
SP3	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	57	67	+	10.6829	8.71e-05	0.027	ACCCCACCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	71	81	-	10.6829	8.71e-05	0.027	GCACCACCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	71	81	-	10.6829	8.71e-05	0.027	GCACCACCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	71	81	-	10.6829	8.71e-05	0.027	GCACCACCCAC
Tcf7	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	20	31	+	8.67742	8.71e-05	1	TGAGAGCAAAGA
RARA::RXRA	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	84	100	-	9.22449	8.71e-05	0.405	GGGTGAGCGGGCGGGGT
CTCF	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	15	33	-	8.09836	8.71e-05	0.133	TGGCCCCGAGGGGACAAGC
CTCF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	82	100	+	8.09836	8.71e-05	0.133	TGGCCCCGAGGGGACAAGC
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	82	100	+	8.09836	8.71e-05	0.133	TGGCCCCGAGGGGACAAGC
ELF3	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	26	38	+	7.56897	8.71e-05	0.184	AAAGCGGAAGAAG
ELF3	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	77	89	-	7.56897	8.71e-05	0.184	AAAGCGGAAGAAG
Gata1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	39	49	+	11.0408	8.71e-05	1	CCCCTATCTCT
Gata1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	39	49	+	11.0408	8.71e-05	1	CCCCTATCTCT
Gata1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	39	49	+	11.0408	8.71e-05	1	CCCCTATCTCT
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	39	49	+	11.0408	8.71e-05	1	CCCCTATCTCT
Gata1	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	66	76	-	11.0408	8.71e-05	1	CCCCTATCTCT
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:160568910..160569024,+__2377.1.0.0	15	25	-	10.2241	8.71e-05	0.0512	CGGCGGGGACC
E2F4	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	62	72	-	10.2241	8.71e-05	0.0512	CGGCGGGGACC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.1	90	100	+	10.2241	8.71e-05	0.0512	CGGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.1.0	90	100	+	10.2241	8.71e-05	0.0512	CGGCGGGGACC
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:160568910..160569024,-__403.1.0.0	90	100	+	10.2241	8.71e-05	0.0512	CGGCGGGGACC
E2F4	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	80	90	-	10.2241	8.71e-05	0.0512	GAGCGCGAGAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	7	27	-	9.12245	8.71e-05	0.0225	TGGTGTGGTGAGGAGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	9	29	-	9.12245	8.71e-05	0.0225	GAGGCAGTGGTTAGGGGGGGC
ZNF263	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	13	33	-	9.12245	8.71e-05	0.0225	GAGGGCGGAGAGAGCATAAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	18	38	-	9.12245	8.71e-05	0.0225	GATTGAATGGAGGGGGAAGGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	42	62	-	9.12245	8.71e-05	0.0225	GGTGGGGGGGAAGAGGATGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	42	62	-	9.12245	8.71e-05	0.0225	GGTGGGGGGGAAGAGGATGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.0.0	42	62	-	9.12245	8.71e-05	0.0225	GGTGGGGGGGAAGAGGATGGA
ZNF263	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	47	67	-	9.12245	8.71e-05	0.0225	AGGGCAGGGTGGGCCGGAAAT
ZNF263	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	62	82	-	9.12245	8.71e-05	0.0225	TGTGGGGAAGGGGAAGGGGAA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	71	91	-	9.12245	8.71e-05	0.0225	GAGGCAGTGGTTAGGGGGGGC
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	32	52	+	9.12245	8.71e-05	0.0225	GGATGGGAACGGGGGAGAAGA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	33	53	+	9.12245	8.71e-05	0.0225	TGTGGGGAAGGGGAAGGGGAA
ZNF263	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	49	69	+	9.12245	8.71e-05	0.0225	AGGGCAGGGTGGGCCGGAAAT
ZNF263	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	82	102	+	9.12245	8.71e-05	0.0225	GAGGGCGGAGAGAGCATAAGA
EGR3	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	31	45	+	5.56897	8.71e-05	0.0418	CTCCGCCCGCCCCTT
EGR3	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	70	84	-	5.56897	8.71e-05	0.0418	CTCCGCCCGCCCCTT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	19	34	-	9.78182	8.71e-05	0.0416	CCCCTCCCCCCCGCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	45	60	+	9.78182	8.71e-05	0.0416	CGCCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	45	60	+	9.78182	8.71e-05	0.0416	CGCCCCCCCCGCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	45	60	+	9.78182	8.71e-05	0.0416	CGCCCCCCCCGCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	45	60	+	9.78182	8.71e-05	0.0416	CGCCCCCCCCGCCCCC
NFYA	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	5	22	+	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
NFYA	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	5	22	+	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
NFYA	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	50	67	+	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	48	65	-	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
NFYA	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.1.0	48	65	-	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
NFYA	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	93	110	-	8.52439	8.71e-05	0.224	AGCCCACTGGTTGGCGTG
ETV3	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	10.7887	8.71e-05	0.176	GACGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	10.7887	8.71e-05	0.176	GACGGAAGTG
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	44	56	-	10.2787	8.71e-05	0.359	GGGACTGTCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	25	37	+	10.2787	8.71e-05	0.359	TTGGCTCACAGCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	65	77	+	10.2787	8.71e-05	0.359	GGGACTGTCACCT
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	81	98	-	4.22936	8.71e-05	0.632	GGAAAGTGAGTCCGTATG
IRF2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	81	98	-	4.22936	8.71e-05	0.632	GGAAAGTGAGTCCGTATG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	59	70	-	10.1818	8.71e-05	0.109	CGGTGTCCGCAG
KLF5	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	28	37	-	10.5714	8.71e-05	0.0278	GTCACTCCCT
GRHL1	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	99	110	-	10.1897	8.72e-05	1	AGGACCGGTTCA
HIC2	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	81	89	+	10.7455	8.72e-05	0.424	GTGCCCGCA
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	85	93	+	10.7455	8.72e-05	0.424	GTGCCCGCA
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	85	93	+	10.7455	8.72e-05	0.424	GTGCCCGCA
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	16	24	-	10.7455	8.72e-05	0.424	GTGCCCGCA
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	16	24	-	10.7455	8.72e-05	0.424	GTGCCCGCA
HIC2	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	26	34	-	10.7455	8.72e-05	0.424	GTGCCCGCA
Gata4	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	22	32	-	11.1034	8.72e-05	1	CTTTATCTCCA
Gata4	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	49	59	+	11.1034	8.72e-05	1	CTTTATCTCCA
Gata4	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	83	93	+	11.1034	8.72e-05	1	CTTTATCTCCA
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	40	49	-	10.7097	8.72e-05	1	ATTTTCCCTT
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	40	49	-	10.7097	8.72e-05	1	ATTTTCCCTT
NFAT5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.0.0	75	84	+	10.7097	8.72e-05	1	ATTTCCCATT
NFAT5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.1.0	75	84	+	10.7097	8.72e-05	1	ATTTCCCATT
E2F8	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	41	52	-	3.26829	8.72e-05	0.631	CTTCCGGCGGAA
E2F8	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	63	74	+	3.26829	8.72e-05	0.631	CTTCCGGCGGAA
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	12	24	+	9.70492	8.72e-05	0.0589	TGCCATGCCGGCA
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	82	94	+	9.70492	8.72e-05	0.0589	TGCCCGGGTGGGC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	21	33	-	9.70492	8.72e-05	0.0589	TGCCCGGGTGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	91	103	-	9.70492	8.72e-05	0.0589	TGCCATGCCGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	91	103	-	9.70492	8.72e-05	0.0589	TGCCATGCCGGCA
TEAD1	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	58	67	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	87	96	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	87	96	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	87	96	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	87	96	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	89	98	-	10.9839	8.72e-05	1	TGCATTCCAG
TEAD1	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	17	26	+	10.9839	8.72e-05	1	TGCATTCCAG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	42	55	-	5.55319	8.72e-05	0.106	GGCGGCCCGCGGGG
E2F4	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	66	76	+	10.2069	8.72e-05	0.0512	GCGCGGGGGAC
E2F4	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	85	95	-	10.2069	8.72e-05	0.0512	GCGCGGGGGAC
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	19	33	+	-6.81429	8.72e-05	0.998	GATGTCACAAGCTCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	19	33	+	-6.81429	8.72e-05	0.998	GATGTCACAAGCTCA
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	14	28	-	-6.81429	8.72e-05	0.998	AGGGTGAAGAGGAAA
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	18	32	+	9.74242	8.72e-05	0.125	CCCCCGCGCGTCCCC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	1	10	-	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	17	26	+	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	17	26	+	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	23	32	-	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:72145537..72145651,-__989.1.1.0	32	41	-	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:72145537..72145651,-__989.1.0.0	32	41	-	10.2245	8.72e-05	0.0287	AGGGTGGAGT
Klf4	FLIPPED__mrna.flip.antisense__chr11:72145537..72145651,+__2448.1.0.0	74	83	+	10.2245	8.72e-05	0.0287	AGGGTGGAGT
TFAP2C	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	-	10.7959	8.72e-05	0.0876	GCCCCTAGGGCG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	37	51	+	6.55263	8.72e-05	0.284	AGGCTTAGGCAGCTG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	37	51	+	6.55263	8.72e-05	0.284	AGGCTTAGGCAGCTG
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	30	43	-	4.78571	8.72e-05	0.0759	GAGGGCTTCCGGGA
PLAG1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	29	42	+	4.78571	8.72e-05	0.0759	GGGGCGGTAAGGGC
PLAG1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	30	43	+	4.78571	8.72e-05	0.0759	GAGGCGATGGAGGG
PAX5	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	43	61	+	10.0645	8.72e-05	0.155	GGAGGCGGCGGCGCGGGGA
PAX5	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	54	72	-	10.0645	8.72e-05	0.155	GGAGGCGGCGGCGCGGGGA
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	14	25	-	10.8226	8.72e-05	0.281	CCGCCCACCCCA
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	88	99	+	10.8226	8.72e-05	0.281	CCGCCCACCCCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	1	11	+	10.4727	8.72e-05	0.0718	AGCCTCCGGGT
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	51	+	10.4727	8.72e-05	0.0718	CGCCGGAGGGG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	74	+	10.4727	8.72e-05	0.0718	CGCCGGAGGGG
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	75	85	+	10.4727	8.72e-05	0.0718	GGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	30	40	-	10.4727	8.72e-05	0.0718	GGCCCGCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	41	51	-	10.4727	8.72e-05	0.0718	CGCCGGAGGGG
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	64	74	-	10.4727	8.72e-05	0.0718	CGCCGGAGGGG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	69	79	-	10.4727	8.72e-05	0.0718	AGCCTCCGGGT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	104	114	-	10.4727	8.72e-05	0.0718	AGCCTCCGGGT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	-	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	+	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	+	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	-	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	+	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	+	9.2459	8.72e-05	0.0644	TGCCTGCGCGGCT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	-	9.2459	8.72e-05	0.0644	GCCCTGCAGGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	-	9.2459	8.72e-05	0.0644	GCCCTGCAGGGCT
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	96	111	+	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
RFX3	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	4	19	-	8.68182	8.73e-05	0.425	TGTATCCTAGGCTACA
Klf12	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	51	65	-	7.57377	8.73e-05	0.0731	CGCCACTCCCACAAG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	66	80	-	7.57377	8.73e-05	0.0731	TGACCCGCCCTCTCT
ZIC4	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	55	69	-	9.85455	8.73e-05	0.112	CGCAACCCGGTGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:42065048..42065162,-__1116.1.1.0	64	78	-	9.85455	8.73e-05	0.112	AGCTCCCCACAGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	35	49	+	9.85455	8.73e-05	0.112	GCCGCCCCGCTTTGC
ZIC4	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	46	60	+	9.85455	8.73e-05	0.112	CGCAACCCGGTGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	51	65	+	9.85455	8.73e-05	0.112	ACCCGCCCACTGCGG
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	47	56	-	9.46552	8.73e-05	0.249	CTCAGGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	47	56	-	9.46552	8.73e-05	0.249	CTCAGGTGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	47	56	-	9.46552	8.73e-05	0.249	CTCAGGTGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	47	56	-	9.46552	8.73e-05	0.249	CTCAGGTGAT
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	44	57	+	-0.166667	8.73e-05	0.257	CTATGACGTTTTCT
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	44	57	+	-0.166667	8.73e-05	0.257	CTATGACGTTTTCT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	31	45	+	8.98485	8.73e-05	0.355	AGTCTTTCCCTTTCT
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	69	83	-	8.98485	8.73e-05	0.355	AGTCTTTCCCTTTCT
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	71	85	-	8.98485	8.73e-05	0.355	TTGCTTCCTGTTCCT
MIXL1	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	55	+	9.95833	8.73e-05	1	GTTAATTAAA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	8	27	-	2.87156	8.73e-05	0.0734	GCGCAAACCAACCAATCAAG
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	8	27	-	2.87156	8.73e-05	0.0734	GCGCAAACCAACCAATCAAG
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	10.8182	8.73e-05	0.585	AGCACGTGCG
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	10.8182	8.73e-05	0.585	AGCACGTGCG
CLOCK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	10.8182	8.73e-05	0.585	AGCACGTGCG
CLOCK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	10.8182	8.73e-05	0.585	AGCACGTGCG
CLOCK	WILDTYPE__Enhancer.noflip.NA__chr3:171543441..171543555,+__1799.1.0.0	56	65	-	10.8182	8.73e-05	0.585	AACACATGCC
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	2	14	+	9.54545	8.73e-05	1	ATGAATAATTAAT
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	2	14	+	9.54545	8.73e-05	1	ATGAATAATTAAT
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	2	14	+	9.54545	8.73e-05	1	ATGAATAATTAAT
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	2	14	+	9.54545	8.73e-05	1	ATGAATAATTAAT
CEBPE	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	6	15	+	11.2364	8.73e-05	0.754	CTTACGAAAC
Myod1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	22	34	-	11.1224	8.73e-05	0.2	CGCAGCTGCGAAC
ELF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	25	36	+	8.45902	8.73e-05	0.122	ACACAGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	43	54	+	8.45902	8.73e-05	0.122	ATTCAGGAAGTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	43	54	+	8.45902	8.73e-05	0.122	ATTCAGGAAGTT
ELF4	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	83	94	+	8.45902	8.73e-05	0.122	ACACAGGAAGTC
ELF4	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	95	106	+	8.45902	8.73e-05	0.122	AAGCAGGAAGCA
ELF4	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	9	20	-	8.45902	8.73e-05	0.122	AAGCAGGAAGCA
GATA1::TAL1	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	48	65	+	10.2545	8.73e-05	1	TATATCACAAGGCTACAG
SP4	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	28	44	-	2.85455	8.74e-05	0.0339	TTAGCCCTGCCCCTCTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	29	45	-	2.85455	8.74e-05	0.0339	CGGGCTCCGCCTCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	29	45	-	2.85455	8.74e-05	0.0339	CGGGCTCCGCCTCCGCG
SP4	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	32	48	-	2.85455	8.74e-05	0.0339	GAGGCCACGCTCCTCCC
SP4	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	71	87	+	2.85455	8.74e-05	0.0339	TTAGCCCTGCCCCTCTC
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	58	74	-	2.85455	8.74e-05	0.0339	CGTACGACGCCCACCTC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	58	74	-	2.85455	8.74e-05	0.0339	CGTACGACGCCCACCTC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	66	82	-	2.85455	8.74e-05	0.0339	TCTGACCCGCCTCCAAA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	66	82	-	2.85455	8.74e-05	0.0339	TCTGACCCGCCTCCAAA
Klf1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	43	53	-	10.2727	8.74e-05	0.0559	CTCCCCACCCT
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	55	65	+	10.2727	8.74e-05	0.0559	CTCCCCACCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	61	71	-	10.2727	8.74e-05	0.0559	GAGCCCGCCCA
Klf1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	98	108	+	10.2727	8.74e-05	0.0559	CTCCCCACCCT
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	60	71	-	10	8.74e-05	0.365	AAAACCCCCAAA
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	62	73	-	10	8.74e-05	0.365	CCGCCCCCCATA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	7	24	+	-15.8421	8.74e-05	0.0551	GAGAGGAAGGGACCTGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	7	24	+	-15.8421	8.74e-05	0.0551	GAGAGGAAGGGACCTGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	93	110	-	-15.8421	8.74e-05	0.0551	GAGAGGAAGGGACCTGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	93	110	-	-15.8421	8.74e-05	0.0551	GAGAGGAAGGGACCTGGC
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	30	43	-	10.2903	8.74e-05	0.506	TTTCCTGAAATAAA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	30	43	-	10.2903	8.74e-05	0.506	TTTCCTGAAATAAA
GCM2	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	20	29	+	10.8033	8.74e-05	0.726	CATGGGGGTT
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.1.0	101	110	+	10.8033	8.74e-05	0.726	GGTGCGGGCC
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:64564400..64564514,+__1448.1.0.0	101	110	+	10.8033	8.74e-05	0.726	GGTGCGGGCC
GCM2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	6	15	-	10.8033	8.74e-05	0.726	GGTGCGGGCC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	45	59	-	9.85455	8.74e-05	0.345	AAGGAGTGAGAGGAA
POU3F1	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	80	91	+	10.747	8.74e-05	1	ATATGCAAAGCA
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr6:2876736..2876850,-__743.1.0.0	79	88	-	10.0909	8.74e-05	0.655	GACAGCTGTA
Alx4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	1	17	-	10.5974	8.74e-05	1	CACATTAATTATTCATG
Alx4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	1	17	-	10.5974	8.74e-05	1	CACATTAATTATTCATG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	15	28	+	8.10345	8.74e-05	0.0405	TGACGCGCCTCCCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	15	28	+	8.10345	8.74e-05	0.0405	TGACGCGCCTCCCG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	97	110	-	8.10345	8.74e-05	0.0405	TGACGCGCCTCCCG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	97	110	-	8.10345	8.74e-05	0.0405	TGACGCGCCTCCCG
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	60	76	-	2.34426	8.74e-05	0.563	AGGGCAACAGAGGGGGA
Myc	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	98	107	+	11.4	8.74e-05	0.53	GCATGTGCCC
Myc	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	98	107	+	11.4	8.74e-05	0.53	GCATGTGCCC
SP2	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	10	24	+	9.82759	8.74e-05	0.018	CGCCCACCCCAACCG
mix-a	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	45	55	+	11.619	8.74e-05	1	TGTTAATTAAA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	89	102	-	4.77551	8.74e-05	0.0759	GCGGGCGAAAGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	89	102	-	4.77551	8.74e-05	0.0759	GCGGGCGAAAGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	89	102	-	4.77551	8.74e-05	0.0759	GCGGGCGAAAGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	89	102	-	4.77551	8.74e-05	0.0759	GCGGGCGAAAGGGA
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	39	52	+	4.77551	8.74e-05	0.0759	GGCGCCAAAGGGGC
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	39	52	+	4.77551	8.74e-05	0.0759	GGCGCCAAAGGGGC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	34	48	-	7.42857	8.74e-05	0.123	GCTCCCCCGCAGCCC
ZIC3	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	52	66	+	7.42857	8.74e-05	0.123	TCCCGCCCGCGGCGC
EGR1	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	9	22	-	9.71154	8.74e-05	0.0301	CACCATCCCCCACA
EGR1	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	93	106	+	9.71154	8.74e-05	0.0301	CACCATCCCCCACA
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	44	53	+	10.3966	8.74e-05	0.154	GGCAGCTGAT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	44	53	+	10.3966	8.74e-05	0.154	GGCAGCTGAT
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	9	22	-	10.1667	8.74e-05	0.0683	GGGGCGGGGGCCTA
Zfx	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	30	43	-	10.1667	8.74e-05	0.0683	CTCCTCCCGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	51	64	-	10.1667	8.74e-05	0.0683	CTCCTCCCGGCCTC
Zfx	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	72	85	+	10.1667	8.74e-05	0.0683	CTCCTCCCGGCCTC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	11	25	+	9.87234	8.74e-05	0.368	CCCAGTGACGTCAGA
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	11	25	+	9.87234	8.74e-05	0.368	CCCAGTGACGTCAGA
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	9	23	-	9.87234	8.74e-05	0.368	CCCAGTGACGTCAGA
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	92	106	+	9.87234	8.74e-05	0.368	CCCAGTGACGTCAGA
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	90	104	-	9.87234	8.74e-05	0.368	CCCAGTGACGTCAGA
Nr2f6(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	43	57	-	-6.82857	8.74e-05	0.998	GAGGTCACGTGGCCA
Nr2f6(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	43	57	-	-6.82857	8.74e-05	0.998	GAGGTCACGTGGCCA
Nr2f6(var.2)	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	58	72	+	-6.82857	8.74e-05	0.998	GAGGTCACGTGGCCA
TCF4	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	-	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	-	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	-	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	-	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	-	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	+	11.449	8.75e-05	0.422	CGCAGCTGCT
TCF4	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	+	11.449	8.75e-05	0.422	CGCAGCTGCT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	34	47	+	8.45902	8.75e-05	0.365	TTTCCCCGGAGGCT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	36	-	8.45902	8.75e-05	0.365	TTTCCCCGGAGGCT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.0	84	97	+	8.45902	8.75e-05	0.365	CCTCCTCAGGGAAT
EBF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	84	97	+	8.45902	8.75e-05	0.365	CCTCCTCAGGGAAT
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.0.0	84	97	+	8.45902	8.75e-05	0.365	CCTCCTCAGGGAAT
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	84	97	+	8.45902	8.75e-05	0.365	CCTCCTCAGGGAAT
JUN	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	48	60	-	9.59184	8.75e-05	0.339	CTCGTGACGCCAT
JUN	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	70	82	+	9.59184	8.75e-05	0.339	CTCGTGACGCCAT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	22	+	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	22	+	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	4	15	-	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	40	+	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	41	52	+	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	41	52	+	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	41	52	+	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	41	52	+	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	50	-	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	50	-	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	54	65	+	10.8545	8.75e-05	0.0579	TGGCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	54	65	+	10.8545	8.75e-05	0.0579	TGGCCCCAGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	74	-	10.8545	8.75e-05	0.0579	GCCCCGGGGGCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	82	93	-	10.8545	8.75e-05	0.0579	CGGCTCCGGGCA
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	100	111	+	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	97	108	-	10.8545	8.75e-05	0.0579	CGCCGCGGGGCC
MTF1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	10	23	-	5.54878	8.75e-05	0.523	TGCGCGCGCGTCAC
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	44	58	+	8.75714	8.75e-05	0.122	CGGGAGCAGAGTCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	44	58	+	8.75714	8.75e-05	0.122	CGGGAGCAGAGTCCG
NR2C2	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	42	56	-	8.75714	8.75e-05	0.122	CGGGGGAGGAGGCCG
NR2C2	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	59	73	+	8.75714	8.75e-05	0.122	CGGGGGAGGAGGCCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	79	93	+	8.75714	8.75e-05	0.122	CGGGAGCAGAGTCCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	79	93	+	8.75714	8.75e-05	0.122	CGGGAGCAGAGTCCG
ELK4	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	52	62	+	10.7636	8.75e-05	0.0766	TAACTTCCTGT
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	21	30	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	21	30	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.1	31	40	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.1.0	31	40	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	31	40	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	31	40	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	31	40	-	10.9818	8.75e-05	0.173	TCCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	35	44	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	35	44	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE__mrna.flip.sense__chr3:136580995..136581109,+__1191.1.0.0	57	66	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	FLIPPED__mrna.flip.antisense__chr3:136580995..136581109,-__2791.1.0.0	49	58	-	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	59	68	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	59	68	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	59	68	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	59	68	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	59	68	+	10.9818	8.75e-05	0.173	CGCGCGTGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	86	95	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	86	95	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	86	95	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	86	95	-	10.9818	8.75e-05	0.173	ACCACGCGCC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	86	95	-	10.9818	8.75e-05	0.173	ACCACGCGCC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	3	23	+	8.30645	8.75e-05	0.189	AGGTAGTTTCTATTTCCTGAC
IRF1	FLIPPED__Lincrna.flip.antisense__chr11:13011056..13011170,+__2346.1.0.0	24	44	-	8.30645	8.75e-05	0.189	CCTCACTCTCTCTCTCTCTCC
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.0.0	71	91	+	8.30645	8.75e-05	0.189	CCTCACTCTCTCTCTCTCTCC
IRF1	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	91	111	-	8.30645	8.75e-05	0.189	AGGTAGTTTCTATTTCCTGAC
ATF7	FLIPPED__Antisense.flip.antisense__chr1:119682960..119683074,-__2614.1.0.0	79	92	-	6.78571	8.75e-05	0.238	CCTTTACGTCATCA
ATF7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.0.0	23	36	+	6.78571	8.75e-05	0.238	CCTTTACGTCATCA
ATF7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:119682960..119683074,+__10.1.1.0	23	36	+	6.78571	8.75e-05	0.238	CCTTTACGTCATCA
TP63	FLIPPED__Antisense.flip.antisense__chr17:20771760..20771874,-__2655.1.0.0	31	48	-	-3.22414	8.75e-05	1	AACACGTTTTTTCAAGTT
TP63	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.0.0	67	84	+	-3.22414	8.75e-05	1	AACACGTTTTTTCAAGTT
TP63	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:20771760..20771874,+__357.1.1.0	67	84	+	-3.22414	8.75e-05	1	AACACGTTTTTTCAAGTT
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.1.0	39	52	-	4.42857	8.75e-05	0.377	TGGCTGCGGGGCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:177053205..177053319,-__409.1.0.0	39	52	-	4.42857	8.75e-05	0.377	TGGCTGCGGGGCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	78	91	-	4.42857	8.75e-05	0.377	TGGCTGCGGGGCAG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	78	91	-	4.42857	8.75e-05	0.377	TGGCTGCGGGGCAG
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	24	37	+	4.42857	8.75e-05	0.377	TGGCTGCGGGGCAG
Hoxa11	WILDTYPE__Antisense.flip.sense__chr10:31607957..31608071,-__122.1.0.0	28	39	-	10.9839	8.75e-05	1	TGTCGTAAAGCC
Hoxa11	FLIPPED__Antisense.flip.antisense__chr10:31607957..31608071,+__2342.1.0.0	76	87	+	10.9839	8.75e-05	1	TGTCGTAAAGCC
NFKB1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	15	27	-	1.16327	8.75e-05	0.262	AGGGGACTCGCCG
NFKB1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	88	100	+	1.16327	8.75e-05	0.262	AGGGGACTCGCCG
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	20	29	+	9.74825	8.75e-05	0.122	ACCACGCGCG
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	86	95	-	9.74825	8.75e-05	0.122	ACCACGCGCG
E2F1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	1	12	-	10.4918	8.75e-05	0.45	GTCGGCGCCACA
E2F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	1	12	-	10.4918	8.75e-05	0.45	GTCGGCGCCACA
E2F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	1	12	-	10.4918	8.75e-05	0.45	GTCGGCGCCACA
E2F1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	1	12	-	10.4918	8.75e-05	0.45	GTCGGCGCCACA
E2F1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	1	12	-	10.4918	8.75e-05	0.45	GTCGGCGCCACA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	31	43	-	9.22951	8.75e-05	0.0644	AGCCCGGCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	31	43	-	9.22951	8.75e-05	0.0644	AGCCCGGCCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	31	43	-	9.22951	8.75e-05	0.0644	AGCCCGGCCGGCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	32	42	+	10.2885	8.75e-05	0.0204	GGCCCTCCTTC
KLF16	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	1	11	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	3	13	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	2	12	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	2	12	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	6	16	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	6	16	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	6	16	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	6	16	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	17	27	+	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	17	27	+	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	13	23	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	24	34	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	24	34	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	24	34	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	24	34	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	26	36	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	26	36	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	40	50	+	10	8.75e-05	0.0257	CACAGGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	41	51	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	32	42	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	33	43	-	10	8.75e-05	0.0257	ACACCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	33	43	-	10	8.75e-05	0.0257	ACACCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	44	54	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	46	56	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	39	49	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	39	49	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	39	49	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	39	49	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	49	59	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	60	70	+	10	8.75e-05	0.0257	GCCACCCCTAC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.1	55	65	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	55	65	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	59	69	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	61	71	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	73	83	+	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	64	74	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	65	75	-	10	8.75e-05	0.0257	CACAGGCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	66	76	-	10	8.75e-05	0.0257	GCCGCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	66	76	-	10	8.75e-05	0.0257	GCCGCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.0	67	77	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.0.0	67	77	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.1.0	67	77	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091890..74092004,+__1938.1.2.1	67	77	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	69	79	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	79	89	-	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	92	102	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	88	98	-	10	8.75e-05	0.0257	ACCCTGCCCCC
KLF16	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	103	113	+	10	8.75e-05	0.0257	GCCCCTCCCGC
KLF16	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	104	114	-	10	8.75e-05	0.0257	GCCCCTCCCGC
Npas2	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	11.2459	8.75e-05	0.34	ACCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	11.2459	8.75e-05	0.34	ACCACGTGAC
TCF3	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	4	13	+	11.7692	8.75e-05	0.404	GGCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	8	17	-	11.7692	8.75e-05	0.404	TCCACCTGCC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	8	17	-	11.7692	8.75e-05	0.404	TCCACCTGCC
TCF3	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	102	111	-	11.7692	8.75e-05	0.404	GGCACCTGTC
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	100	114	+	9.96154	8.75e-05	0.224	GGCGCCGCCAATCAT
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	100	114	+	9.96154	8.75e-05	0.224	GGCGCCGCCAATCAT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	11	25	+	5.55172	8.76e-05	0.0418	GTCCGCCCCCGACCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	11	25	+	5.55172	8.76e-05	0.0418	GTCCGCCCCCGACCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	18	32	-	5.55172	8.76e-05	0.0418	CCTCCCCCCCGCCCC
Bach1::Mafk	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	47	61	+	6.53947	8.76e-05	0.284	GTGGCGAGTCTGCAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	74	88	+	6.53947	8.76e-05	0.284	CCCCCGACTCCGCAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	1	10	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	9.87903	8.76e-05	0.0516	AGCACGTGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	1	10	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	12	21	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	13	22	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	-	9.87903	8.76e-05	0.0516	GCCACGTGCT
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	17	26	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	17	26	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	21	30	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	21	30	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	21	30	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	21	30	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	12	21	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	13	22	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	23	32	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	25	34	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	25	34	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	25	34	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	25	34	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	17	26	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	17	26	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	26	35	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	26	35	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	27	36	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	27	36	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	30	39	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	21	30	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	21	30	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	21	30	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	21	30	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	31	40	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	31	40	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	31	40	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	31	40	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	31	40	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	32	41	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	32	41	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	32	41	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	32	41	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	32	41	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	23	32	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	33	42	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	33	42	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	33	42	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	33	42	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	25	34	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	25	34	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	25	34	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	25	34	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	26	35	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	26	35	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	27	36	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	27	36	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	30	39	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	31	40	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr8:70746277..70746391,+__868.1.0.0	31	40	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	31	40	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	31	40	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	31	40	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	32	41	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	32	41	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	32	41	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	32	41	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	32	41	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	41	50	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	33	42	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	42	51	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	33	42	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	33	42	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	42	51	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	33	42	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	43	52	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	43	52	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	43	52	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	43	52	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	46	55	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	48	57	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	49	58	+	9.87903	8.76e-05	0.0516	TGCACGCGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	49	58	+	9.87903	8.76e-05	0.0516	TGCACGCGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	49	58	+	9.87903	8.76e-05	0.0516	TGCACGCGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	49	58	+	9.87903	8.76e-05	0.0516	TGCACGCGCG
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	41	50	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	42	51	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	42	51	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	9.87903	8.76e-05	0.0516	AGCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	9.87903	8.76e-05	0.0516	AGCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.0.0	43	52	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.0	43	52	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.1.0	43	52	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:33440795..33440909,+__1204.1.2.1	43	52	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	53	62	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	53	62	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	+	9.87903	8.76e-05	0.0516	GCCACGTGCT
Tcfl5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	46	55	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	48	57	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	49	58	-	9.87903	8.76e-05	0.0516	CGCGCGTGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	49	58	-	9.87903	8.76e-05	0.0516	CGCGCGTGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	49	58	-	9.87903	8.76e-05	0.0516	CGCGCGTGCA
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	49	58	-	9.87903	8.76e-05	0.0516	CGCGCGTGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	58	67	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	60	69	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	-	9.87903	8.76e-05	0.0516	GCCACGTGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	-	9.87903	8.76e-05	0.0516	GCCACGTGCT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	53	62	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	53	62	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	63	72	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	64	73	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	9.87903	8.76e-05	0.0516	AGCACGTGGC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	65	74	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	66	75	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	58	67	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	+	9.87903	8.76e-05	0.0516	ACCACGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	69	78	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	60	69	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	69	78	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	71	80	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:33440795..33440909,-__2796.1.0.0	63	72	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	64	73	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	73	82	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	74	83	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	65	74	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	75	84	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	66	75	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	76	85	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	69	78	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	69	78	-	9.87903	8.76e-05	0.0516	GGCACGTGGT
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	69	78	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	79	88	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	71	80	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	81	90	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	73	82	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	74	83	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	75	84	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	76	85	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	85	94	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	79	88	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	81	90	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	93	102	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	93	102	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	93	102	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	93	102	+	9.87903	8.76e-05	0.0516	TGCGCGTGCG
Tcfl5	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	94	103	+	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	85	94	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	93	102	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	93	102	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	93	102	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	93	102	-	9.87903	8.76e-05	0.0516	CGCACGCGCA
Tcfl5	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	94	103	-	9.87903	8.76e-05	0.0516	TGCGCGTGCG
TBX2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	78	88	-	10.8545	8.76e-05	1	CACGTGTGAAG
TBX2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	78	88	-	10.8545	8.76e-05	1	CACGTGTGAAG
TBX2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	27	37	+	10.8545	8.76e-05	1	CACGTGTGAAG
KLF13	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	7	24	-	3.72414	8.76e-05	0.35	TGGCCACGTCCCGCTCAG
Creb5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	17	28	-	7.98182	8.76e-05	0.272	CATGACATCAGA
Creb5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	17	28	-	7.98182	8.76e-05	0.272	CATGACATCAGA
Creb5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	-	7.98182	8.76e-05	0.272	AATTACGTAAGG
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.1.0	5	14	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098432..12098546,+__377.1.0.0	5	14	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.0.0	26	35	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:53694109..53694223,-__237.1.1.0	26	35	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	46	55	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	46	55	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	46	55	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	57	66	+	10.9818	8.76e-05	0.134	GCCGGAAGGA
ETV5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	80	89	-	10.9818	8.76e-05	0.134	TCCGGATGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	80	89	-	10.9818	8.76e-05	0.134	TCCGGATGCC
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	+	10.8182	8.76e-05	0.0934	CGCCCCGCGGGA
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	+	10.8182	8.76e-05	0.0934	CGCCCCGCGGGA
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	-	10.8182	8.76e-05	0.0934	CGCCCCGCGGGA
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	-	10.8182	8.76e-05	0.0934	CGCCCCGCGGGA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	100	111	-	10.8182	8.76e-05	0.0934	TGCCCCAAGGTT
BATF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	37	50	-	-0.181818	8.76e-05	0.257	CAATGAAGTCAGAA
BATF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	37	50	-	-0.181818	8.76e-05	0.257	CAATGAAGTCAGAA
GSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	38	47	+	10.9434	8.76e-05	1	TTTAATCCGC
GSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	38	47	+	10.9434	8.76e-05	1	TTTAATCCGC
GSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	38	47	+	10.9434	8.76e-05	1	TTTAATCCGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	5	14	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	19	28	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	19	28	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	30	39	+	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	25	34	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	26	35	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	26	35	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	26	35	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	26	35	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	28	37	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	28	37	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE__mrna.noflip.NA__chr6:31774561..31774675,-__1294.1.0.0	42	51	-	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	64	73	+	10.2041	8.76e-05	0.0287	GGGGCGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	64	73	+	10.2041	8.76e-05	0.0287	GGGGCGAGGC
NKX2-3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	77	86	+	11.2115	8.76e-05	1	AGCACTTGTG
NKX2-3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	77	86	+	11.2115	8.76e-05	1	AGCACTTGTG
EWSR1-FLI1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.1	24	41	+	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.3.0	24	41	+	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.2.0	24	41	+	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
EWSR1-FLI1	CONTROL_SNP_INDIV__control.flip.sense__chr11:5248266..5248380,-__1715.1.1.0	24	41	+	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
EWSR1-FLI1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr11:5248266..5248380,-__1715.1.0.0	24	41	+	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
EWSR1-FLI1	CONTROL_FLIPPED__control.flip.antisense__chr11:5248266..5248380,+__2542.1.0.0	74	91	-	-15.8553	8.77e-05	0.0551	GGGAGGGCAGGAGCCAGG
ZNF740	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	30	39	+	10.211	8.77e-05	0.0553	GCCCCCCGAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	76	85	-	10.211	8.77e-05	0.0553	GCCCCCCGAC
RFX5	FLIPPED__Lincrna.flip.antisense__chrX:135991522..135991636,-__2733.1.0.0	55	70	+	5.98276	8.77e-05	0.389	GGTTGCTAGGGCGCCA
RFX5	WILDTYPE__Lincrna.flip.sense__chrX:135991522..135991636,+__932.1.0.0	45	60	-	5.98276	8.77e-05	0.389	GGTTGCTAGGGCGCCA
BHLHE22	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	73	82	+	10.5606	8.77e-05	1	ACCGTATGTC
Sox1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487152..40487266,-__2263.1.0.0	71	85	+	2.2931	8.77e-05	1	AAAAATAGCAGTGTG
HOXB13	WILDTYPE__mrna.flip.sense__chr6:108616190..108616304,+__1092.1.0.0	52	61	+	11	8.77e-05	1	CCAATAAAGT
HOXB13	FLIPPED__mrna.flip.antisense__chr6:108616190..108616304,-__2757.1.0.0	54	63	-	11	8.77e-05	1	CCAATAAAGT
INSM1	FLIPPED__mrna.flip.antisense__chr15:40331342..40331456,+__2488.1.0.0	7	18	-	9.08163	8.77e-05	0.197	TGCTAGGGGCTT
INSM1	WILDTYPE__mrna.flip.sense__chr15:40331342..40331456,-__1163.1.0.0	97	108	+	9.08163	8.77e-05	0.197	TGCTAGGGGCTT
NRF1	WILDTYPE__Lincrna.noflip.NA__chr10:6622333..6622447,+__135.1.0.0	84	94	-	9.36364	8.77e-05	0.0239	CCGGGGGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	104	114	+	9.36364	8.77e-05	0.0239	GAGCAGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	104	114	+	9.36364	8.77e-05	0.0239	GAGCAGGCCCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	+	9.68852	8.77e-05	0.0589	GCCCTTCCGGGCT
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	21	33	+	9.68852	8.77e-05	0.0589	GCCCACCCGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	68	80	-	9.68852	8.77e-05	0.0589	CGCCCCCCCGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	68	80	-	9.68852	8.77e-05	0.0589	CGCCCCCCCGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	82	94	-	9.68852	8.77e-05	0.0589	GCCCACCCGGGCA
EHF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	47	58	+	9.67213	8.77e-05	0.145	AATGAGGAAGTT
EHF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	47	58	+	9.67213	8.77e-05	0.145	AATGAGGAAGTT
EHF	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	57	68	-	9.67213	8.77e-05	0.145	AATGAGGAAGTT
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	86	97	+	9.67213	8.77e-05	0.145	TCCCCGGAAGCT
Nr1h3::Rxra	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	20	38	-	10.1613	8.77e-05	0.674	CATCCCCAAATAACCTCTG
Nr1h3::Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr16:67993585..67993700,+__2318.1.1.0	78	96	+	10.1613	8.77e-05	0.674	CATCCCCAAATAACCTCTG
Nr1h3::Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	78	96	+	10.1613	8.77e-05	0.674	CATCCCCAAATAACCTCTG
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	52	61	-	11.803	8.77e-05	0.343	CCCACGTGAA
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	52	61	-	11.803	8.77e-05	0.343	CCCACGTGAA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	3	21	-	8.08197	8.77e-05	0.133	ACGCCCCTAGATGGCCCAG
CTCF	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	54	72	+	8.08197	8.77e-05	0.133	GGCCCCCCTGGGGGCGGGA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	43	61	-	8.08197	8.77e-05	0.133	GGCCCCCCTGGGGGCGGGA
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	43	61	-	8.08197	8.77e-05	0.133	GGCCCCCCTGGGGGCGGGA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	43	61	-	8.08197	8.77e-05	0.133	GGCCCCCCTGGGGGCGGGA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	4	18	+	9.18182	8.77e-05	0.368	AGCACTGAGCCAGCA
Nfe2l2	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	17	31	+	9.18182	8.77e-05	0.368	GCCTATGACTCTGGA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	71	85	-	9.18182	8.77e-05	0.368	AGCACTGAGCCAGCA
Nfe2l2	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	84	98	-	9.18182	8.77e-05	0.368	GCCTATGACTCTGGA
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	98	114	+	5.81034	8.77e-05	0.882	GGGAACCCTGCGTTTCT
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	98	114	+	5.81034	8.77e-05	0.882	GGGAACCCTGCGTTTCT
THAP1	WILDTYPE__Enhancer.noflip.NA__chr9:90326978..90327092,+__1927.1.0.0	61	69	+	9.92105	8.77e-05	0.215	CTGCCCTAA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr14:103585466..103585580,-__2154.1.0.0	87	95	+	9.92105	8.77e-05	0.215	CTGCCCTAA
Tcf21	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	64	77	-	5.44737	8.77e-05	0.568	GTGGCAGCTGTTGG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	31	42	-	8.25455	8.77e-05	0.131	TGTCCGGAAATG
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	23	32	-	8.82653	8.78e-05	0.264	TGGGTTTCCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	23	32	-	8.82653	8.78e-05	0.264	TGGGTTTCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	32	46	+	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	32	46	+	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	32	46	+	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
Klf12	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	40	54	+	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	56	70	+	7.55738	8.78e-05	0.0731	GCCCCCGCCCTCGGA
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	56	70	+	7.55738	8.78e-05	0.0731	GCCCCCGCCCTCGGA
Klf12	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	45	59	-	7.55738	8.78e-05	0.0731	GCCCCCGCCCTCGGA
Klf12	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	61	75	-	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
Klf12	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	69	83	-	7.55738	8.78e-05	0.0731	CGCCCCGCCCCTGCC
HINFP	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	38	49	+	10.1667	8.78e-05	0.109	GCGCGTCCCCTC
HINFP	WILDTYPE__mrna.flip.sense__chr1:231664341..231664455,+__1137.1.0.0	37	48	-	10.1667	8.78e-05	0.109	CTGCGTCCGGAG
HINFP	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	65	76	+	10.1667	8.78e-05	0.109	GGGCGTGCGCGC
HINFP	FLIPPED__mrna.flip.antisense__chr1:231664341..231664455,-__2767.1.0.0	67	78	+	10.1667	8.78e-05	0.109	CTGCGTCCGGAG
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	66	77	-	10.1667	8.78e-05	0.109	GCGCGTCCCCTC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	66	77	-	10.1667	8.78e-05	0.109	GCGCGTCCCCTC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	87	98	-	10.1667	8.78e-05	0.109	GGGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	87	98	-	10.1667	8.78e-05	0.109	GGGCGTGCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	87	98	-	10.1667	8.78e-05	0.109	GGGCGTGCGCGC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	87	98	-	10.1667	8.78e-05	0.109	GGGCGTGCGCGC
HINFP	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	88	99	-	10.1667	8.78e-05	0.109	GAGCCTCCGCCG
HINFP	WILDTYPE__Antisense.noflip.NA__chr4:183065561..183065675,-__622.1.0.0	94	105	-	10.1667	8.78e-05	0.109	CCTGGTCCGCCG
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.1.0	92	101	+	10.5102	8.78e-05	0.028	ATCCCGCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947352..75947466,-__2276.1.0.0	92	101	+	10.5102	8.78e-05	0.028	ATCCCGCCCT
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	3	12	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	3	12	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	3	12	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	3	12	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	9	18	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	9	18	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	21	30	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	21	30	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	29	38	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	29	38	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	29	38	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	29	38	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	29	38	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	60	69	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	60	69	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	60	69	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	60	69	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	79	88	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	79	88	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	79	88	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	97	106	+	10.5571	8.78e-05	0.126	AGCGGAAGCG
ERF	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	103	112	-	10.5571	8.78e-05	0.126	AGCGGAAGCG
FOSL2	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	73	83	-	9.92727	8.78e-05	0.26	GGGTGCCTCAC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	12	24	-	9.12069	8.78e-05	0.0578	GCCCTCGAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	98	110	-	9.12069	8.78e-05	0.0578	GGCCACCCGGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	98	110	-	9.12069	8.78e-05	0.0578	GGCCACCCGGGCA
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	28	44	+	2.83636	8.78e-05	0.034	CTGGCTCCGGCCCCGGC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	31	47	+	2.83636	8.78e-05	0.034	GCAGCCACTCCTCTGTT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	31	47	+	2.83636	8.78e-05	0.034	GCAGCCACTCCTCTGTT
SP4	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	68	84	-	2.83636	8.78e-05	0.034	GCAGCCACTCCTCTGTT
STAT1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	5	15	+	9.85455	8.78e-05	0.421	TTGCCTGGAAA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	31	41	+	10.4545	8.78e-05	0.0718	TGCCCTCGGCA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	34	44	+	10.4545	8.78e-05	0.0718	CGCTCCAGGCT
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	55	65	+	10.4545	8.78e-05	0.0718	CGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.1.0	66	76	+	10.4545	8.78e-05	0.0718	CGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.1	66	76	+	10.4545	8.78e-05	0.0718	CGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.2.0	66	76	+	10.4545	8.78e-05	0.0718	CGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	66	76	+	10.4545	8.78e-05	0.0718	CGCCGGCGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	84	94	+	10.4545	8.78e-05	0.0718	CGCTCCAGGCT
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	21	31	-	10.4545	8.78e-05	0.0718	CGCTCCAGGCT
Pax2	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	7	14	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	25	32	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.1.0	33	40	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40410488..40410602,-__2262.1.0.0	33	40	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	36	43	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	36	43	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	42	49	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	58	65	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	63	70	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	66	73	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	71	78	+	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	78	85	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	84	91	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	94	101	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	94	101	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	94	101	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	94	101	+	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	19	26	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	23	30	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	24	31	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	37	44	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	38	45	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	42	49	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	48	55	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	50	57	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	51	58	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	53	60	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	66	73	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	83	90	-	9.71111	8.78e-05	0.645	GGTCACGC
Pax2	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	85	92	-	9.71111	8.78e-05	0.645	GGTCACGG
Pax2	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	105	112	-	9.71111	8.78e-05	0.645	GGTCACGC
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	18	27	+	10.7541	8.78e-05	0.905	AAAACTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	18	27	+	10.7541	8.78e-05	0.905	AAAACTGCCT
Myb	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	21	30	+	10.7541	8.78e-05	0.905	CCAGCTGACA
Myb	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	36	45	-	10.7541	8.78e-05	0.905	AAAACTGCCT
Myb	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	63	72	+	10.7541	8.78e-05	0.905	AAAACTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	85	94	-	10.7541	8.78e-05	0.905	CCAGCTGACA
Myb	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.1	85	94	-	10.7541	8.78e-05	0.905	CCAGCTGACA
Myb	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	85	94	-	10.7541	8.78e-05	0.905	CCAGCTGACA
TBX20	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	58	68	+	10.2273	8.78e-05	1	GAGTTGTGAGG
TBX20	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	58	68	+	10.2273	8.78e-05	1	GAGTTGTGAGG
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	80	92	-	10.2623	8.78e-05	0.359	CTGTCTCGCCCCG
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	23	35	+	10.2623	8.78e-05	0.359	CTGTCTCGCCCCG
ZBTB33	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	59	73	-	9.72727	8.78e-05	0.125	CCCCCGCGATTTTTT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	42	56	+	9.72727	8.78e-05	0.125	CCCCCGCGATTTTTT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	42	56	+	9.72727	8.78e-05	0.125	CCCCCGCGATTTTTT
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	16	26	-	10.931	8.78e-05	0.296	CTTTGTGGGTA
STAT1::STAT2	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	57	71	+	8.9697	8.78e-05	0.355	AGACTTTCTGGTTCC
ZBTB7A	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	77	88	-	10.3857	8.78e-05	0.226	GCCGACCACGCC
ZBTB7A	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	27	38	+	10.3857	8.78e-05	0.226	GCCGACCACGCC
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	30	42	-	7.42424	8.79e-05	0.264	CCGGGAAGTCCCT
NFKB2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	30	42	-	7.42424	8.79e-05	0.264	CCGGGAAGTCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	88	100	+	7.42424	8.79e-05	0.264	CGGGATTCACCCC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	88	100	+	7.42424	8.79e-05	0.264	CGGGATTCACCCC
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	82	102	+	9.27551	8.79e-05	1	ACTCTGCTCACTCAGGAGACA
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	82	102	+	9.27551	8.79e-05	1	ACTCTGCTCACTCAGGAGACA
MAFG	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	13	33	-	9.27551	8.79e-05	1	ACTCTGCTCACTCAGGAGACA
FOXH1	WILDTYPE__Lincrna.noflip.NA__chr8:126963359..126963473,-__832.1.0.0	18	28	-	10.8077	8.79e-05	1	GGAAATCAACA
FOXH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	55	65	-	10.8077	8.79e-05	1	GGAAATCAACA
FOXH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	55	65	-	10.8077	8.79e-05	1	GGAAATCAACA
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	9	25	-	4.04255	8.79e-05	1	AGGCACAGGGGGTCCCC
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	9	25	-	4.04255	8.79e-05	1	AGGCACAGGGGGTCCCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	42	+	10.4694	8.79e-05	0.237	GGCACGTGGCG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	42	+	10.4694	8.79e-05	0.237	GGCACGTGGCG
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	42	+	10.4694	8.79e-05	0.237	GGCACGTGGCG
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	62	71	+	7.46154	8.79e-05	0.22	AGCACGAGAC
BHLHE41	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	68	77	+	7.46154	8.79e-05	0.22	CACACGTGAG
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	6	15	-	7.46154	8.79e-05	0.22	CACACGTGAG
BHLHE41	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	38	47	-	7.46154	8.79e-05	0.22	CACACGTGAG
ESR2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	15	29	+	10.25	8.79e-05	0.487	AGGTCACCATGGAAA
ESR2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	80	94	-	10.25	8.79e-05	0.487	AGGTCACCATGGAAA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	102	111	+	10.8654	8.79e-05	0.124	AGCGGAAGGA
ETV6	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	93	102	-	10.8654	8.79e-05	0.124	AGCGGAAGGA
ZIC3	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	22	36	-	7.41429	8.79e-05	0.123	CCCTTCCTGCGGCGG
ZIC3	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	79	93	+	7.41429	8.79e-05	0.123	CCCTTCCTGCGGCGG
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	83	97	+	7.41429	8.79e-05	0.123	CCCCTCCCCCCGGGC
Mafb	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	8	19	-	10.9101	8.79e-05	0.865	CTCATGCTGACT
Mafb	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	8	19	-	10.9101	8.79e-05	0.865	CTCATGCTGACT
Sox17	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	12	20	+	11.3596	8.79e-05	1	ATCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	12	20	+	11.3596	8.79e-05	1	ATCATTGTG
Sox17	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.1.0	80	88	-	11.3596	8.79e-05	1	ATCATTGTG
Sox17	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.0.0	80	88	-	11.3596	8.79e-05	1	ATCATTGTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	73	81	+	10.9455	8.79e-05	0.481	CTCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	73	81	+	10.9455	8.79e-05	0.481	CTCCACCTG
ZEB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	10	18	-	10.9455	8.79e-05	0.481	CTCCACCTG
ZEB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.0.0	10	18	-	10.9455	8.79e-05	0.481	CTCCACCTG
POU2F2	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	80	92	-	9.89655	8.79e-05	1	ATGCTTTGCATAT
ETV1	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	11.0727	8.79e-05	0.127	AGCGGAAATG
ETV1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	11.0727	8.79e-05	0.127	AGCGGAAATG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	31	44	+	8.08621	8.79e-05	0.0405	GGCCCCGCCCCGGA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	31	44	+	8.08621	8.79e-05	0.0405	GGCCCCGCCCCGGA
KLF14	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	43	56	+	8.08621	8.79e-05	0.0405	GGGCCCGCCCAATC
KLF14	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	31	44	-	8.08621	8.79e-05	0.0405	GGCCCCGCCCCGGA
KLF14	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	71	84	+	8.08621	8.79e-05	0.0405	GGCCCCGCCCCGGA
KLF14	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	59	72	-	8.08621	8.79e-05	0.0405	GGGCCCGCCCAATC
KLF14	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	71	84	-	8.08621	8.79e-05	0.0405	GGCCCCGCCCCGGA
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	20	28	+	11.2115	8.79e-05	0.565	AGACCACAA
RUNX2	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	45	53	+	11.2115	8.79e-05	0.565	AGACCACAA
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	22	30	-	11.2115	8.79e-05	0.565	AGACCACAA
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	22	30	-	11.2115	8.79e-05	0.565	AGACCACAA
RUNX2	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	62	70	-	11.2115	8.79e-05	0.565	AGACCACAA
VAX2	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	28	35	+	10.063	8.79e-05	1	CTAATGAC
VAX2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	73	80	+	10.063	8.79e-05	1	CTAATGAC
VAX2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	78	85	+	10.063	8.79e-05	1	CTAATGAC
VAX2	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	101	108	+	10.063	8.79e-05	1	CTAATGAC
UNCX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.0796	8.79e-05	1	CTAATTAG
UNCX	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.0796	8.79e-05	1	CTAATTAG
UNCX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.0796	8.79e-05	1	CTAATTAG
UNCX	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.0796	8.79e-05	1	CTAATTAG
PRRX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	10.46	8.79e-05	1	CTAATTAG
PRRX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	10.46	8.79e-05	1	CTAATTAG
PRRX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	10.46	8.79e-05	1	CTAATTAG
PRRX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	10.46	8.79e-05	1	CTAATTAG
FOXG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	4	11	+	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	4	11	+	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	49	56	+	12.5056	8.79e-05	1	GTAAACAC
FOXG1	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	58	65	+	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	78	85	+	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	78	85	+	12.5056	8.79e-05	1	GTAAACAC
PDX1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	52	59	-	10.6415	8.79e-05	1	GTAATTAA
Lhx8	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	67	74	+	10.3636	8.79e-05	1	CTAATCAG
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	39	46	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	39	46	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	61	68	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.1.0	61	68	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.1.0	74	81	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	74	81	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	74	81	+	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:159846053..159846167,-__1641.1.0.0	74	81	+	11.4032	8.79e-05	1	GTAAACAT
PDX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	18	25	+	10.6415	8.79e-05	1	GTAATTAA
PDX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	18	25	+	10.6415	8.79e-05	1	GTAATTAA
PDX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	35	42	+	10.6415	8.79e-05	1	GTAATTAA
PDX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	35	42	+	10.6415	8.79e-05	1	GTAATTAA
PDX1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	74	81	+	10.6415	8.79e-05	1	GTAATTAA
VAX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	7	14	-	10.063	8.79e-05	1	CTAATGAC
VAX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	7	14	-	10.063	8.79e-05	1	CTAATGAC
VAX2	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	10	17	-	10.063	8.79e-05	1	CTAATGAC
VAX2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	30	37	-	10.063	8.79e-05	1	CTAATGAC
VAX2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	35	42	-	10.063	8.79e-05	1	CTAATGAC
VAX2	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	80	87	-	10.063	8.79e-05	1	CTAATGAC
VAX2	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	100	107	-	10.063	8.79e-05	1	CTAATGAC
Foxj2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	2	9	-	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.1.0	45	52	-	11.4032	8.79e-05	1	GTAAACAT
Foxj2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	45	52	-	11.4032	8.79e-05	1	GTAAACAT
FOXG1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	37	44	-	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	50	57	-	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	78	85	-	12.5056	8.79e-05	1	GTAAACAC
FOXG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	99	106	-	12.5056	8.79e-05	1	GTAAACAC
ELK1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	9.68085	8.79e-05	0.109	ACCGGAAACT
ELK1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	9.68085	8.79e-05	0.109	ACCGGAAACT
HOXC10	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	82	91	-	11.2182	8.79e-05	1	ATCATTAAAA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	36	53	+	-15.8684	8.8e-05	0.0551	GAAAGGAGGAACTGAAAG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	36	53	+	-15.8684	8.8e-05	0.0551	GAAAGGAGGAACTGAAAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr9:100000955..100001069,-__885.1.0.0	52	69	+	-15.8684	8.8e-05	0.0551	GCCAGGGGTGGAGGAAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	45	62	-	-15.8684	8.8e-05	0.0551	GAGGGGAAGCCAGCGGGG
SPI1	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	74	87	-	1.85455	8.8e-05	0.262	AAAAAGAGGAGGAG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	36	49	-	10.1515	8.8e-05	0.0685	GCTGCCTAAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	36	49	-	10.1515	8.8e-05	0.0685	GCTGCCTAAGCCTG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	-	9.21311	8.8e-05	0.0644	CCCCCTCGCGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	-	9.21311	8.8e-05	0.0644	CCCCCTCGCGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	-	9.21311	8.8e-05	0.0644	CCCCCTCGCGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	-	9.21311	8.8e-05	0.0644	CCCCCTCGCGGGA
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	28	37	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	28	37	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	59	68	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.0.0	72	81	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.1.0	72	81	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.0	72	81	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375086..30375200,-__2307.1.2.1	72	81	+	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	22	31	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	47	56	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	47	56	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	67	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	67	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	67	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE__Lincrna.noflip.NA__chr1:59250755..59250869,+__83.1.0.0	65	74	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	71	80	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	71	80	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	71	80	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
ETS1	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	78	87	-	10.9828	8.8e-05	0.12	CCCGGAAGCA
NFE2	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	28	38	-	4.85714	8.8e-05	0.392	AGTGAATCATG
NFE2	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	65	75	-	4.85714	8.8e-05	0.392	AGTGAATCATG
NFE2	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	40	50	+	4.85714	8.8e-05	0.392	AGTGAATCATG
NFE2	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	77	87	+	4.85714	8.8e-05	0.392	AGTGAATCATG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	7	22	-	9.76364	8.8e-05	0.0416	CCACCCCCACCCCGCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	7	22	-	9.76364	8.8e-05	0.0416	CCACCCCCACCCCGCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	7	22	-	9.76364	8.8e-05	0.0416	CCACCCCCACCCCGCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	9	24	-	9.76364	8.8e-05	0.0416	CCCCGCGCCCGCTTCT
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	9	24	-	9.76364	8.8e-05	0.0416	CCCCGCGCCCGCTTCT
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:91317140..91317254,+__2335.1.0.0	41	56	+	9.76364	8.8e-05	0.0416	GCCCGCCCCAGCACCG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	53	68	+	9.76364	8.8e-05	0.0416	CCCCCCGCACGCATGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	56	71	+	9.76364	8.8e-05	0.0416	CCCCGCCCGCCCGGCG
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.1.0	59	74	-	9.76364	8.8e-05	0.0416	GCCCGCCCCAGCACCG
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:91317140..91317254,-__95.1.0.0	59	74	-	9.76364	8.8e-05	0.0416	GCCCGCCCCAGCACCG
EGR4	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	91	106	+	9.76364	8.8e-05	0.0416	CCCCGCGCCCGCTTCT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:1723169..1723283,+__1634.1.0.0	89	104	-	9.76364	8.8e-05	0.0416	TACCGCCGTCGCGCTT
FOXP2	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	100	110	+	11.0455	8.8e-05	1	CAATAAACAAC
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	21	35	-	8.74286	8.8e-05	0.122	GGGGAGGAGAGGGGA
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	91	105	-	8.74286	8.8e-05	0.122	CACGGGCAGAGGCGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	91	105	-	8.74286	8.8e-05	0.122	CACGGGCAGAGGCGA
Esrra	WILDTYPE__Antisense.noflip.NA__chr5:118406499..118406613,-__653.1.0.0	54	64	-	6.70909	8.8e-05	1	TTCAAGCTCAA
PAX5	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	11	29	+	10.0484	8.8e-05	0.155	TAGAGCAGGGGAGCGGAGA
PAX5	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	30	48	+	10.0484	8.8e-05	0.155	TGATTCACTGAAGTGGGGC
PAX5	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	67	85	+	10.0484	8.8e-05	0.155	TGATTCACTGAAGTGGGGC
PAX5	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	30	48	-	10.0484	8.8e-05	0.155	TGATTCACTGAAGTGGGGC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	60	78	-	10.0484	8.8e-05	0.155	TAGAGCAGGGGAGCGGAGA
PAX5	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	67	85	-	10.0484	8.8e-05	0.155	TGATTCACTGAAGTGGGGC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	73	87	+	10.4324	8.8e-05	0.19	GCGGGCCAGAGGCGC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	73	87	+	10.4324	8.8e-05	0.19	GCGGGCCAGAGGCGC
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	73	87	+	10.4324	8.8e-05	0.19	GCGGGCCAGAGGCGC
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	73	87	+	10.4324	8.8e-05	0.19	GCGGGCCAGAGGCGC
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr1:149871097..149871211,+__952.1.0.0	58	72	-	10.4324	8.8e-05	0.19	CCGGAGCAAAATGCA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	60	80	-	9.10204	8.8e-05	0.0227	TAAGAAGGAAAAAAAAAAAAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	60	80	-	9.10204	8.8e-05	0.0227	TAAGAAGGAAAAAAAAAAAAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	64	84	-	9.10204	8.8e-05	0.0227	GAAAGAATCCGGGGAGGGGAA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	64	84	-	9.10204	8.8e-05	0.0227	GAAAGAATCCGGGGAGGGGAA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	67	87	-	9.10204	8.8e-05	0.0227	AAAGAAAGGAAGCCGGGAGGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	67	87	-	9.10204	8.8e-05	0.0227	AAAGAAAGGAAGCCGGGAGGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	70	90	-	9.10204	8.8e-05	0.0227	GGTGGAGAATCAGAAGGTAGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	84	104	-	9.10204	8.8e-05	0.0227	GGGGCAGCCGAGCAGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	84	104	-	9.10204	8.8e-05	0.0227	GGGGCAGCCGAGCAGGGGAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	13	33	+	9.10204	8.8e-05	0.0227	GGGGAAAAGGAGGGGGTGGAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	13	33	+	9.10204	8.8e-05	0.0227	GGGGAAAAGGAGGGGGTGGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	23	43	+	9.10204	8.8e-05	0.0227	GGGAGCTGGAGGGAGGAGAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	23	43	+	9.10204	8.8e-05	0.0227	GGGAGCTGGAGGGAGGAGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	92	112	+	9.10204	8.8e-05	0.0227	AAAGGTGGAGGCGGAAGTGAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	85	95	+	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.4.0	85	95	+	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	85	95	+	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	85	95	+	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	18	28	-	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	18	28	-	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	18	28	-	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.4.0	18	28	-	10.6667	8.8e-05	0.0272	CCGCCGCCCAC
Sox1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:80008510..80008624,+__139.1.0.0	15	29	-	2.27586	8.8e-05	1	AACCAAACCATCGTT
CEBPG	WILDTYPE__Antisense.flip.sense__chr12:96390180..96390294,+__260.1.0.0	35	44	-	9.97959	8.8e-05	0.888	GTTGCTCAAT
CEBPG	FLIPPED__Antisense.flip.antisense__chr12:96390180..96390294,-__2642.1.0.0	71	80	+	9.97959	8.8e-05	0.888	GTTGCTCAAT
CEBPG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	64	73	-	9.97959	8.8e-05	0.888	GTTGCTCAAT
CEBPG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	64	73	-	9.97959	8.8e-05	0.888	GTTGCTCAAT
CEBPG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	64	73	-	9.97959	8.8e-05	0.888	GTTGCTCAAT
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	55	65	-	10.2576	8.8e-05	0.0563	GCGCCCACCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	55	65	-	10.2576	8.8e-05	0.0563	GCGCCCACCCA
JUN	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	13	25	+	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	13	25	+	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	33	45	+	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	33	45	+	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	34	46	-	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	34	46	-	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
JUN	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	90	102	-	9.57143	8.8e-05	0.339	TCCGTGACGTCAC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	39	50	+	10.7857	8.8e-05	0.0876	CGCCCCGAGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	39	50	+	10.7857	8.8e-05	0.0876	CGCCCCGAGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	39	50	+	10.7857	8.8e-05	0.0876	CGCCCCGAGCCT
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	39	50	+	10.7857	8.8e-05	0.0876	CGCCCCGAGCCT
SP2	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	14	28	+	9.81034	8.8e-05	0.0181	TTCCCTCCCTTCCTT
SP2	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	20	34	-	9.81034	8.8e-05	0.0181	TTCCCTCCCTTCCTT
SP2	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	81	95	+	9.81034	8.8e-05	0.0181	TTCCCTCCCTTCCTT
SP2	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	87	101	-	9.81034	8.8e-05	0.0181	TTCCCTCCCTTCCTT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	90	104	-	9.81034	8.8e-05	0.0181	CCACCGCCTACCGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	90	104	-	9.81034	8.8e-05	0.0181	CCACCGCCTACCGGC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	40	59	-	2.84404	8.8e-05	0.0739	CCACTCCCCTCACCCCCTCC
EGR2	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	7	17	+	8.93103	8.8e-05	0.0862	GCGGCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	98	108	-	8.93103	8.8e-05	0.0862	GCGGCCACGCT
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	98	108	-	8.93103	8.8e-05	0.0862	GCGGCCACGCT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	98	108	-	8.93103	8.8e-05	0.0862	GCGGCCACGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	98	108	-	8.93103	8.8e-05	0.0862	GCGGCCACGCT
SCRT2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	16	28	+	5.86885	8.8e-05	1	AAGCCAGAGGTGG
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	4	18	-	9.83636	8.8e-05	0.112	GACTCCCCGGAGGTC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	4	18	-	9.83636	8.8e-05	0.112	GACTCCCCGGAGGTC
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	4	18	-	9.83636	8.8e-05	0.112	GACTCCCCGGAGGTC
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	4	18	-	9.83636	8.8e-05	0.112	GACTCCCCGGAGGTC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	11	25	-	9.83636	8.8e-05	0.112	ACCCCCCCGGGGCCT
ZIC4	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	34	48	-	9.83636	8.8e-05	0.112	TCCCACCTGTAGGGG
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	23	37	+	9.83636	8.8e-05	0.112	CGCCCCCTCCTGCTC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	19	39	-	8.29032	8.8e-05	0.189	TTTGCGTTTCTTTTTGCCCTC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	19	39	-	8.29032	8.8e-05	0.189	TTTGCGTTTCTTTTTGCCCTC
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	40	60	+	8.29032	8.8e-05	0.189	TTTGCGTTTCTTTTTGCCCTC
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	40	60	+	8.29032	8.8e-05	0.189	TTTGCGTTTCTTTTTGCCCTC
Gabpa	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	33	43	-	10.3443	8.8e-05	0.0784	CCGGAAAAGGG
Gabpa	WILDTYPE__Antisense.noflip.NA__chr12:98910197..98910311,-__262.1.0.0	60	70	+	10.3443	8.8e-05	0.0784	ACGGAAGTCCC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	11	22	-	9.96552	8.8e-05	0.365	CCGCCCCCCACA
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	22	33	+	9.96552	8.8e-05	0.365	CCGCCCCCCACA
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	69	80	+	9.96552	8.8e-05	0.365	CCGCCCCCCACA
ETV3	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	10.7606	8.8e-05	0.176	AGCGGAAATG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	10.7606	8.8e-05	0.176	AGCGGAAATG
EMX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	77	86	-	11.1064	8.8e-05	1	AGTAATTAGA
EMX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	77	86	-	11.1064	8.8e-05	1	AGTAATTAGA
TFEB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	-	10.9038	8.8e-05	0.202	CCCACGTGCT
TFEB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	-	10.9038	8.8e-05	0.202	CCCACGTGCT
TFEB	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	+	10.9038	8.8e-05	0.202	CCCACGTGCT
EGR3	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	27	41	+	5.53448	8.8e-05	0.0418	CGACGGCCCCGCCCG
EGR3	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	22	36	-	5.53448	8.8e-05	0.0418	TCCCGCCTCCCCTCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	39	53	+	5.53448	8.8e-05	0.0418	GCCCACCCACCCGAG
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	76	90	+	5.53448	8.8e-05	0.0418	TACCACTCACGCAGA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	76	90	+	5.53448	8.8e-05	0.0418	TACCACTCACGCAGA
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.1	76	90	+	5.53448	8.8e-05	0.0418	TACCACTCACGCAGA
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	76	90	+	5.53448	8.8e-05	0.0418	TACCACTCACGCAGA
EGR3	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	74	88	-	5.53448	8.8e-05	0.0418	CGACGGCCCCGCCCG
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	32	41	-	11.3276	8.81e-05	0.859	ATCACCTGGG
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	32	41	-	11.3276	8.81e-05	0.859	ATCACCTGGG
HOXA10	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	48	58	+	10.6038	8.81e-05	1	GCCAATAAAAG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	12	28	+	10.5395	8.81e-05	0.668	CCAGTGACGTCAGAGAG
Gmeb1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	12	28	+	10.5395	8.81e-05	0.668	CCAGTGACGTCAGAGAG
Gmeb1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	93	109	+	10.5395	8.81e-05	0.668	CCAGTGACGTCAGAGAG
Gmeb1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	6	22	-	10.5395	8.81e-05	0.668	CCAGTGACGTCAGAGAG
Gmeb1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	87	103	-	10.5395	8.81e-05	0.668	CCAGTGACGTCAGAGAG
ELF1	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	14	25	+	8.23636	8.81e-05	0.131	TTCCCGGAAACT
ELF1	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	95	106	+	8.23636	8.81e-05	0.131	AAGCAGGAAGCA
ELF1	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	9	20	-	8.23636	8.81e-05	0.131	AAGCAGGAAGCA
ELF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	90	101	-	8.23636	8.81e-05	0.131	TTCCCGGAAACT
ELF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	90	101	-	8.23636	8.81e-05	0.131	TTCCCGGAAACT
Nr2f6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	27	40	-	8.09091	8.81e-05	0.462	GCGGTCAAAGCTTA
Nr2f6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	27	40	-	8.09091	8.81e-05	0.462	GCGGTCAAAGCTTA
Nr2f6	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	88	101	-	8.09091	8.81e-05	0.462	CTGGTCAGGGGTCG
Nr2f6	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	14	27	+	8.09091	8.81e-05	0.462	CTGGTCAGGGGTCG
Myod1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	10	22	+	11.102	8.81e-05	0.201	CGCACCTGCGAGC
E2F7	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	41	54	-	-5.80328	8.81e-05	1	GTTTCCCCCGTTAA
E2F7	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	61	74	+	-5.80328	8.81e-05	1	GTTTCCCCCGTTAA
EOMES	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	80	92	-	10.6951	8.81e-05	1	TAGGTGAGAATTT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	9	20	-	10.3816	8.81e-05	0.0386	CCCACCCCCTCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	9	20	-	10.3816	8.81e-05	0.0386	CCCACCCCCTCT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	9	20	-	10.3816	8.81e-05	0.0386	CCCACCCCCTCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	9	20	-	10.3816	8.81e-05	0.0386	CCCACCCCCTCT
SP8	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	43	54	-	10.3816	8.81e-05	0.0386	CACCCGCCCGCC
SP8	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	10	21	+	10.3816	8.81e-05	0.0386	TCCCCGCCCGCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	23	34	+	10.3816	8.81e-05	0.0386	TCCCCGCCCGCT
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	23	34	+	10.3816	8.81e-05	0.0386	TCCCCGCCCGCT
SP8	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	61	72	+	10.3816	8.81e-05	0.0386	CACCCGCCCGCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	79	90	+	10.3816	8.81e-05	0.0386	TCCCCGCCCGCT
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	16	-	10.0727	8.81e-05	0.655	GACAGCTGCT
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	54	63	-	10.0727	8.81e-05	0.655	GACAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	54	63	-	10.0727	8.81e-05	0.655	GACAGCTGCT
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	10.7414	8.81e-05	1	GGCATATGTT
OLIG2	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	10.7414	8.81e-05	1	GGCATATGTT
SPDEF	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	37	47	+	9.65455	8.81e-05	0.269	AACCGGAAACC
SPDEF	WILDTYPE__Antisense.flip.sense__chr3:150421720..150421834,+__555.1.0.0	88	98	+	9.65455	8.81e-05	0.269	TCCCGGATTTA
SPDEF	FLIPPED__Antisense.flip.antisense__chr3:150421720..150421834,-__2689.1.0.0	17	27	-	9.65455	8.81e-05	0.269	TCCCGGATTTA
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	78	-	9.65455	8.81e-05	0.269	AACCGGAAACC
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	78	-	9.65455	8.81e-05	0.269	AACCGGAAACC
CEBPB	WILDTYPE__Lincrna.noflip.NA__chr1:202830822..202830936,+__43.1.0.0	6	15	+	11.16	8.81e-05	0.822	CTTACGAAAC
CEBPB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	+	11.16	8.81e-05	0.822	GTTACGTAAT
TP53	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	17	34	-	5.77551	8.81e-05	1	CGCGTGCGCGGACCAGTT
E2F4	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	26	36	+	10.1897	8.81e-05	0.0512	GGGCGGCAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	60	70	-	10.1897	8.81e-05	0.0512	GGGCGGCAGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	60	70	-	10.1897	8.81e-05	0.0512	GGGCGGCAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.0.0	76	86	-	10.1897	8.81e-05	0.0512	GGGCGGCAGGT
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32552716..32552830,+__1481.1.1.0	76	86	-	10.1897	8.81e-05	0.0512	GGGCGGCAGGT
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	79	89	-	10.1897	8.81e-05	0.0512	GGGCGGCAGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	79	89	-	10.1897	8.81e-05	0.0512	GGGCGGCAGCG
SOX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	11	26	-	-14.1515	8.81e-05	1	GAGCAATAGCAGAGCT
SOX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	11	26	-	-14.1515	8.81e-05	1	GAGCAATAGCAGAGCT
PRDM1	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	7	21	+	9.83636	8.81e-05	0.345	AGTTGGTGAAAGGGA
PRDM1	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	94	108	-	9.83636	8.81e-05	0.345	AGTTGGTGAAAGGGA
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	10.9808	8.82e-05	0.148	CCCGGAAGCG
FEV	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	10.9808	8.82e-05	0.148	CCCGGAAGCG
Atoh1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	93	102	+	11.0645	8.82e-05	1	AACAGATGCT
Atoh1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	93	102	+	11.0645	8.82e-05	1	AACAGATGCT
Atoh1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	93	102	+	11.0645	8.82e-05	1	AACAGATGCT
Atoh1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	93	102	+	11.0645	8.82e-05	1	AACAGATGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	23	36	+	9.69231	8.82e-05	0.0304	CTTCCTCTCACGCG
EGR1	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	79	92	-	9.69231	8.82e-05	0.0304	CTTCCTCTCACGCG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	20	32	+	9.67213	8.82e-05	0.0589	TCCCCGGCCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	22	34	+	9.67213	8.82e-05	0.0589	GGCCGGCGGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	22	34	+	9.67213	8.82e-05	0.0589	GGCCGGCGGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	22	34	+	9.67213	8.82e-05	0.0589	GGCCGGCGGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	22	34	+	9.67213	8.82e-05	0.0589	GGCCGGCGGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	+	9.67213	8.82e-05	0.0589	GGCCTCCGAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	+	9.67213	8.82e-05	0.0589	GGCCTCCGAGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:92465723..92465837,+__821.1.0.0	94	106	+	9.67213	8.82e-05	0.0589	TCCCGAGGGGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	100	112	-	9.67213	8.82e-05	0.0589	TGCCCTCCTGGGC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	56	65	+	10.3793	8.82e-05	0.154	CCCAGCTGAT
GSC2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	18	27	-	10.4746	8.82e-05	1	TTTAATCCCA
GSC2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	18	27	-	10.4746	8.82e-05	1	TTTAATCCCA
GSC2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	18	27	-	10.4746	8.82e-05	1	TTTAATCCCA
GSC2	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	18	27	-	10.4746	8.82e-05	1	TTTAATCCCA
GSC2	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	18	27	-	10.4746	8.82e-05	1	TTTAATCCCA
GSC2	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	88	97	+	10.4746	8.82e-05	1	TTTAATCCCA
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	6	18	+	9.10345	8.82e-05	0.0578	GCCCTTCAGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	26	38	-	9.10345	8.82e-05	0.0578	CGCCTCCGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	26	38	-	9.10345	8.82e-05	0.0578	CGCCTCCGCGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	26	38	-	9.10345	8.82e-05	0.0578	CGCCTCCGCGGGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	40	52	-	9.10345	8.82e-05	0.0578	GCCCTTCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	40	52	-	9.10345	8.82e-05	0.0578	GCCCTTCAGGGGG
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	63	75	+	9.10345	8.82e-05	0.0578	GCCCTTCAGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	65	77	-	9.10345	8.82e-05	0.0578	GCCCCGCGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	65	77	-	9.10345	8.82e-05	0.0578	GCCCCGCGAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	65	77	-	9.10345	8.82e-05	0.0578	GCCCCGCGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	65	77	-	9.10345	8.82e-05	0.0578	GCCCCGCGAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	65	77	-	9.10345	8.82e-05	0.0578	GCCCCGCGAGGCC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	97	109	-	9.10345	8.82e-05	0.0578	GCCCTTCAGGGGG
HOXB2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	+	9.71698	8.82e-05	1	TCTAATTAGG
Rarg	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	93	108	-	-3.40816	8.82e-05	0.877	GGGGGCATGAGGGCGC
POU5F1B	WILDTYPE__Lincrna.noflip.NA__chr11:62620470..62620584,-__182.1.0.0	66	74	+	10.885	8.82e-05	1	TATGCTAAA
GATA2	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	43	56	+	11.0909	8.82e-05	1	GGCTCCTTATCAGG
KLF16	FLIPPED__mrna.flip.antisense__chr5:171433639..171433753,+__2464.1.0.0	9	19	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	9	19	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	17	27	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	18	28	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr17:42634063..42634177,-__2829.1.0.0	33	43	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	54	64	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	54	64	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	60	70	+	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	57	67	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	57	67	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	63	73	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr17:42634063..42634177,+__1770.1.0.0	72	82	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.1	83	93	-	9.98276	8.82e-05	0.0257	CACGCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	83	93	-	9.98276	8.82e-05	0.0257	CACGCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	83	93	-	9.98276	8.82e-05	0.0257	CACGCGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	83	93	-	9.98276	8.82e-05	0.0257	CACGCGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.2.0	83	93	-	9.98276	8.82e-05	0.0257	CACGCGCCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	88	98	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	96	106	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr5:171433639..171433753,-__1090.1.0.0	96	106	-	9.98276	8.82e-05	0.0257	CGCCCTCCCCC
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.0.0	65	78	+	10.7414	8.82e-05	0.369	TTGCAGAGAAAGAG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:15964808..15964922,-__1633.1.1.0	65	78	+	10.7414	8.82e-05	0.369	TTGCAGAGAAAGAG
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	82	96	-	6.36066	8.82e-05	1	CCTCCACAGGTCTCA
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	82	96	-	6.36066	8.82e-05	1	CCTCCACAGGTCTCA
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	82	96	-	6.36066	8.82e-05	1	CCTCCACAGGTCTCA
E2F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	63	78	-	0.097561	8.82e-05	1	AAAGCCGCGCCAGATC
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	42	56	-	9.16667	8.82e-05	0.368	TGCTGTGACCCAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	42	56	-	9.16667	8.82e-05	0.368	TGCTGTGACCCAGCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	42	56	-	9.16667	8.82e-05	0.368	TGCTGTGACCCAGCT
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	47	58	+	9.65574	8.82e-05	0.145	GGCCCGGAAGCG
EHF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	47	58	+	9.65574	8.82e-05	0.145	GGCCCGGAAGCG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	47	58	+	9.65574	8.82e-05	0.145	GGCCCGGAAGCG
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	47	58	+	9.65574	8.82e-05	0.145	GGCCCGGAAGCG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	60	71	+	9.65574	8.82e-05	0.145	GGCCCGGAAGCG
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	75	91	-	2.31148	8.82e-05	0.563	AGGGCAGGCAGTGGTGA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	75	91	-	2.31148	8.82e-05	0.563	AGGGCAGGCAGTGGTGA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	75	91	-	2.31148	8.82e-05	0.563	AGGGCAGGCAGTGGTGA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	20	30	-	9.87273	8.82e-05	0.253	CATGAGTCATA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	20	30	-	9.87273	8.82e-05	0.253	CATGAGTCATA
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	17	31	-	7.54098	8.82e-05	0.0731	TGCCCCGCCCCGGGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	17	31	-	7.54098	8.82e-05	0.0731	TGCCCCGCCCCGGGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	6	23	+	-15.8816	8.83e-05	0.0551	GGAAGAGGAGAAGGAGCT
RELA	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	53	62	+	8.78571	8.83e-05	0.264	CGGGGATCCC
RELA	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	55	64	-	8.78571	8.83e-05	0.264	CGGGGATCCC
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	30	42	+	7.40909	8.83e-05	0.264	GAGGAATCCCCCC
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	59	71	+	7.40909	8.83e-05	0.264	CAGGGATGTCCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	59	71	+	7.40909	8.83e-05	0.264	CAGGGATGTCCCT
NFKB2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	59	71	+	7.40909	8.83e-05	0.264	CAGGGATGTCCCT
FOS	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	13	23	-	10.9149	8.83e-05	0.279	GGTGACTCAGA
FOS	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	31	41	-	10.9149	8.83e-05	0.279	GGTGACTCAGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	1	12	+	10.8364	8.83e-05	0.0579	CGGCCCCGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	1	12	+	10.8364	8.83e-05	0.0579	CGGCCCCGGGCC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	13	24	+	10.8364	8.83e-05	0.0579	CCCCCGGAGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	15	26	-	10.8364	8.83e-05	0.0579	CCCCCGGAGCCG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	19	30	-	10.8364	8.83e-05	0.0579	CCCCCGGAGCCG
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	19	30	-	10.8364	8.83e-05	0.0579	CGCCCCAGGGAA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	51	62	+	10.8364	8.83e-05	0.0579	AGCCCGGAGCCG
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	52	63	+	10.8364	8.83e-05	0.0579	CGCCCCCCGGGG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	45	56	-	10.8364	8.83e-05	0.0579	CGGCCCCGGGCC
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	52	63	-	10.8364	8.83e-05	0.0579	CGCCCCCCGGGG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	96	+	10.8364	8.83e-05	0.0579	CGCCCCAGGGAA
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	91	102	-	10.8364	8.83e-05	0.0579	CCCCCGGAGCCG
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	91	102	-	10.8364	8.83e-05	0.0579	CGGCCCCGGGCC
EVX2	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	29	38	+	10.14	8.83e-05	1	GGTCATTAGT
EVX2	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	77	86	-	10.14	8.83e-05	1	GGTCATTAGT
ERG	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	33	42	-	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	49	58	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	49	58	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	49	58	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	49	58	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	54	63	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	52	61	-	11.0182	8.83e-05	0.149	CCCGGAAGCG
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:177019193..177019307,+__1643.1.1.0	62	71	+	11.0182	8.83e-05	0.149	CCCGGAAGCG
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	29	38	+	9.01818	8.83e-05	0.266	GTCACATGAC
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	28	37	-	9.01818	8.83e-05	0.266	CTCGCGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	28	37	-	9.01818	8.83e-05	0.266	CTCGCGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	28	37	-	9.01818	8.83e-05	0.266	CTCGCGTGAT
SREBF2(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	78	87	+	9.01818	8.83e-05	0.266	CTCGCGTGAT
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	97	106	+	9.01818	8.83e-05	0.266	ACCACGTGAG
RARA::RXRA	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	56	72	+	9.19388	8.83e-05	0.405	AGGGGAAGGGGAGGTGG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	87	103	+	9.19388	8.83e-05	0.405	GGTTCGTTTAGAGGTAA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.1.0	87	103	+	9.19388	8.83e-05	0.405	GGTTCGTTTAGAGGTAA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	29	47	+	8.06557	8.83e-05	0.133	AGGCCACGTGGAGGAAGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	29	47	+	8.06557	8.83e-05	0.133	AGGCCACGTGGAGGAAGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	29	47	+	8.06557	8.83e-05	0.133	AGGCCACGTGGAGGAAGCG
CTCF	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	39	57	+	8.06557	8.83e-05	0.133	CGATCCCTAGGTGGAGATG
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	1	11	+	10.9091	8.83e-05	0.0557	GGCCGCAGGCC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr5:159848756..159848870,+__1365.1.0.0	24	34	+	10.9091	8.83e-05	0.0557	CGCCCACGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	24	34	+	10.9091	8.83e-05	0.0557	CGCCGGAGGGA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	24	34	+	10.9091	8.83e-05	0.0557	CGCCGGAGGGA
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	18	28	-	10.9091	8.83e-05	0.0557	GGCCGCAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	40	50	+	10.9091	8.83e-05	0.0557	ACCCTGGGGCA
TFAP2A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	36	46	-	10.9091	8.83e-05	0.0557	ACCCTGGGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	36	46	-	10.9091	8.83e-05	0.0557	ACCCTGGGGCA
TFAP2A	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	104	114	-	10.9091	8.83e-05	0.0557	GGCCGCAGGCC
MYF6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	30	39	+	9.89394	8.83e-05	1	GCCAACTGTT
MYF6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	30	39	+	9.89394	8.83e-05	1	GCCAACTGTT
MYF6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	30	39	+	9.89394	8.83e-05	1	GCCAACTGTT
MYF6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	30	39	+	9.89394	8.83e-05	1	GCCAACTGTT
MYF6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	30	39	+	9.89394	8.83e-05	1	GCCAACTGTT
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	22	33	+	10.8065	8.83e-05	0.281	GAAACCCCCGAG
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	82	93	-	10.8065	8.83e-05	0.281	GAAACCCCCGAG
REST	WILDTYPE__Lincrna.noflip.NA__chr9:89563513..89563627,+__914.1.0.0	25	45	+	4.37755	8.83e-05	0.237	TCCGCCACCAGAGGCAGCGGG
SPI1	FLIPPED__mrna.flip.antisense__chr4:39033976..39034090,+__2462.1.0.0	9	22	-	1.83636	8.83e-05	0.262	TAAAGCAGGAAGCA
SPI1	WILDTYPE__mrna.flip.sense__chr4:39033976..39034090,-__1084.1.0.0	93	106	+	1.83636	8.83e-05	0.262	TAAAGCAGGAAGCA
FOXP2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	1	11	-	11.0303	8.83e-05	1	ATGTAAACATG
ZIC3	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	13	27	+	7.4	8.83e-05	0.123	CCCACCCCGCTGCAG
ZIC3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	27	41	-	7.4	8.83e-05	0.123	CCCACCCCGCTGCAG
ZIC3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	74	88	+	7.4	8.83e-05	0.123	CCCACCCCGCTGCAG
ZIC3	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	88	102	-	7.4	8.83e-05	0.123	CCCACCCCGCTGCAG
Nr5a2	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	89	103	+	9.58621	8.83e-05	0.506	GCGTTCAAGGACCAC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	29	40	+	10.1515	8.84e-05	0.109	CGACGTGCGCCC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	29	40	+	10.1515	8.84e-05	0.109	CGACGTGCGCCC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	29	40	+	10.1515	8.84e-05	0.109	CGACGTGCGCCC
HINFP	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	75	86	-	10.1515	8.84e-05	0.109	CGACGTGCGCCC
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	67	82	-	-10.8462	8.84e-05	0.329	AGGCCCACCTCTATGG
GLIS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	67	82	-	-10.8462	8.84e-05	0.329	AGGCCCACCTCTATGG
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	67	82	-	-10.8462	8.84e-05	0.329	AGGCCCACCTCTATGG
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	67	82	-	-10.8462	8.84e-05	0.329	AGGCCCACCTCTATGG
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	30	39	-	9.43103	8.84e-05	0.249	ATCAGCTGAT
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	30	39	+	9.43103	8.84e-05	0.249	ATCAGCTGAT
NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	72	82	-	4.83673	8.84e-05	0.392	AATGACTCGCC
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	3	14	+	10.7755	8.84e-05	0.0876	AGCCCACAGGCT
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	70	81	+	10.7755	8.84e-05	0.0876	AGCCCACAGGCT
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	34	45	-	10.7755	8.84e-05	0.0876	AGCCCACAGGCT
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	101	112	-	10.7755	8.84e-05	0.0876	AGCCCACAGGCT
Neurog1	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	6	15	-	10.0769	8.84e-05	1	GGCATATGTT
Neurog1	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	50	59	+	10.0769	8.84e-05	1	GGCATATGTT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	57	69	+	9.19672	8.84e-05	0.0644	GGCCCGGGAGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	57	69	+	9.19672	8.84e-05	0.0644	GGCCCGGGAGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	+	9.19672	8.84e-05	0.0644	GCCCTGCAGGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	+	9.19672	8.84e-05	0.0644	GCCCTGCAGGGCG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	+	9.19672	8.84e-05	0.0644	CGCCCGCGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	-	9.19672	8.84e-05	0.0644	TGCCTGCGCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	-	9.19672	8.84e-05	0.0644	TGCCTGCGCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	-	9.19672	8.84e-05	0.0644	TGCCTGCGCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	-	9.19672	8.84e-05	0.0644	TGCCTGCGCGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	-	9.19672	8.84e-05	0.0644	TGCCTGCGCGGCG
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	102	114	-	9.19672	8.84e-05	0.0644	TCCCTCTGCGGCG
SP3	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	48	58	+	10.6585	8.84e-05	0.0272	GCCAGGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	25	35	-	10.6585	8.84e-05	0.0272	GCCACACCCTG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	25	35	-	10.6585	8.84e-05	0.0272	GCCACACCCTG
SP3	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	57	67	-	10.6585	8.84e-05	0.0272	GCCAGGCCCAC
SP3	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	104	114	-	10.6585	8.84e-05	0.0272	GTCCCACCCAC
ELF5	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	39	49	+	11.0182	8.84e-05	0.159	ACAAGGAAGCT
ELF5	FLIPPED__Lincrna.flip.antisense__chr20:37063936..37064050,+__2383.1.0.0	47	57	+	11.0182	8.84e-05	0.159	ACAAGGAAGCT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	52	62	+	11.0182	8.84e-05	0.159	CTCCGGAAGTG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	52	62	+	11.0182	8.84e-05	0.159	CTCCGGAAGTG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	53	63	+	11.0182	8.84e-05	0.159	AGCAGGAAGAA
ELF5	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	81	91	+	11.0182	8.84e-05	0.159	AACAGGAAGAG
ELF5	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	21	31	-	11.0182	8.84e-05	0.159	TCCAGGAAGCT
ELF5	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	24	34	-	11.0182	8.84e-05	0.159	AACAGGAAGAG
ELF5	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	51	61	-	11.0182	8.84e-05	0.159	CTCCGGAAGTG
ELF5	WILDTYPE__Lincrna.flip.sense__chr20:37063936..37064050,-__473.1.0.0	58	68	-	11.0182	8.84e-05	0.159	ACAAGGAAGCT
ELF5	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	77	87	-	11.0182	8.84e-05	0.159	AGCAGGAAGAA
PPARG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	73	92	+	6.33333	8.84e-05	1	AAGGAGCAGGATGACTCATA
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	11	24	-	7.45902	8.84e-05	0.188	GGCCCCACGGAACC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	46	59	+	7.45902	8.84e-05	0.188	GGCCCCACGGAACC
PROP1	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	69	79	+	10.0896	8.84e-05	1	TAATGTAATTT
HLF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	10	21	+	11.1864	8.84e-05	1	AATTGCGTAACT
HLF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	10	21	+	11.1864	8.84e-05	1	AATTGCGTAACT
HLF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	10	21	+	11.1864	8.84e-05	1	AATTGCGTAACT
HLF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	10	21	+	11.1864	8.84e-05	1	AATTGCGTAACT
HLF	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	16	-	11.1864	8.84e-05	1	AATTGCGTAACT
HLF	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	105	-	11.1864	8.84e-05	1	AATTGCGTAACT
ELF4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	53	64	+	8.42623	8.84e-05	0.123	CTCGCGGAAGGG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	53	64	+	8.42623	8.84e-05	0.123	CTCGCGGAAGGG
Rarb(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	74	90	-	-3.57576	8.84e-05	0.861	AGATCAACTGTGGGTCT
ZBTB33	FLIPPED__Antisense.flip.antisense__chr10:127408027..127408141,+__2340.1.0.0	31	45	-	9.71212	8.84e-05	0.125	CGCTCACGGTATCTG
ZBTB33	WILDTYPE__Antisense.flip.sense__chr10:127408027..127408141,-__112.1.0.0	70	84	+	9.71212	8.84e-05	0.125	CGCTCACGGTATCTG
INSM1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	88	99	-	9.04082	8.85e-05	0.197	TGCCTGCGGCTG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	16	27	+	9.04082	8.85e-05	0.197	TGCCTGCGGCTG
INSM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	16	27	+	9.04082	8.85e-05	0.197	TGCCTGCGGCTG
PAX9	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	40	56	+	-0.745455	8.85e-05	0.586	CTTCCCGCTTCAGCAGG
MNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	82	91	-	10.403	8.85e-05	1	GGCAATTAGA
MNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	82	91	-	10.403	8.85e-05	1	GGCAATTAGA
Hmx1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	76	92	+	10.4146	8.85e-05	1	CTGAGCTATTAATCCAT
E2F8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	6	17	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	6	17	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	6	17	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	6	17	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	6	17	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	8	19	-	3.19512	8.85e-05	0.631	GCTCCCGCCGAC
E2F8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	8	19	-	3.19512	8.85e-05	0.631	GCTCCCGCCGAC
E2F8	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	45	56	-	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	59	70	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	59	70	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	59	70	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	59	70	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	59	70	+	3.19512	8.85e-05	0.631	CCTCCCGCCCAC
E2F8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	60	71	-	3.19512	8.85e-05	0.631	GCTCCCGCCGAC
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	60	71	-	3.19512	8.85e-05	0.631	GCTCCCGCCGAC
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	25	38	+	10.1364	8.85e-05	0.0685	GCGCACCGGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	36	49	+	10.1364	8.85e-05	0.0685	GGCCCAGGGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	36	49	+	10.1364	8.85e-05	0.0685	GGCCCAGGGGCCTG
Zfx	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	55	68	-	10.1364	8.85e-05	0.0685	GCGCACCGGGCCTC
Zfx	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	66	79	-	10.1364	8.85e-05	0.0685	GGCCCAGGGGCCTG
MAFF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	13	30	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
MAFF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	13	30	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
MAFF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	14	31	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
MAFF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	14	31	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
MAFF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	14	31	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
MAFF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	14	31	+	10.3778	8.85e-05	0.965	GACCAATCAGCAGGATGT
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	13	26	+	7.86364	8.85e-05	0.357	CAGACACGTCACGC
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	45	58	+	7.86364	8.85e-05	0.357	ACTCCACATCAGCG
CREB3L1	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	73	86	-	7.86364	8.85e-05	0.357	ACTCCACATCAGCG
NFKB1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	4	16	-	1.12245	8.85e-05	0.262	GGGGAAGTCACCG
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	22	34	+	1.12245	8.85e-05	0.262	TGGGGGTTGACCT
NFKB1	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	58	70	-	1.12245	8.85e-05	0.262	AGGGGAACTCCTC
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	74	84	-	10.9796	8.85e-05	0.4	CATTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	74	84	-	10.9796	8.85e-05	0.4	CATTCCTGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	74	84	-	10.9796	8.85e-05	0.4	CATTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	74	84	-	10.9796	8.85e-05	0.4	CATTCCTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	74	84	-	10.9796	8.85e-05	0.4	CATTCCTGGAA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	81	100	-	2.82569	8.85e-05	0.074	CCAGACACCACCACCGCTAC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	81	100	-	2.82569	8.85e-05	0.074	CCAGACACCACCACCGCTAC
RORA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr15:60547657..60547771,-__2056.1.0.0	27	40	+	6.25843	8.85e-05	1	CTTATGTTGGTCAT
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	31	43	-	10.41	8.85e-05	1	TTTATGCAAAACT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.1.0	34	44	+	10.2692	8.85e-05	0.0206	CTCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:149969815..149969929,-__1354.1.0.0	34	44	+	10.2692	8.85e-05	0.0206	CTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	51	61	+	10.2692	8.85e-05	0.0206	CTCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	51	61	+	10.2692	8.85e-05	0.0206	CTCCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	51	61	+	10.2692	8.85e-05	0.0206	CTCCCGCCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	72	82	-	10.2692	8.85e-05	0.0206	GTTCCACCCCG
SP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	72	82	-	10.2692	8.85e-05	0.0206	GTTCCACCCCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	99	109	+	10.2692	8.85e-05	0.0206	TCCCCACCCTG
FLI1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	10.5957	8.85e-05	0.14	CCCGGAAGTT
FLI1	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	10.5957	8.85e-05	0.14	CCCGGAAGTT
JUND	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	28	38	+	9.48936	8.85e-05	0.264	GGTGATTCAGG
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	96	110	+	10.4234	8.85e-05	0.19	TTTAGTGAAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.1.0	96	110	+	10.4234	8.85e-05	0.19	TTTAGTGAAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	96	110	+	10.4234	8.85e-05	0.19	TTTAGTGAAAGGGCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.0.0	96	110	+	10.4234	8.85e-05	0.19	TTTAGTGAAAGGGCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.0	96	110	+	10.4234	8.85e-05	0.19	TTTAGTGAAAGGGCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	38	52	-	10.4234	8.85e-05	0.19	GGGAGTCAGGGGCCA
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	47	61	-	10.4234	8.85e-05	0.19	TGAGGAGAGAGGTCC
NR2C2	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	53	67	+	8.72857	8.85e-05	0.122	GGGGAGGAGAGGTGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	48	62	-	8.72857	8.85e-05	0.122	GGGGAGGAGAGGTGG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	48	62	-	8.72857	8.85e-05	0.122	GGGGAGGAGAGGTGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	48	62	-	8.72857	8.85e-05	0.122	GGGGAGGAGAGGTGG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	69	83	-	8.72857	8.85e-05	0.122	AGGGGTCGGGAGCCG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	38	48	+	9.63636	8.85e-05	0.269	CACCGGATGCT
SPDEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	38	48	+	9.63636	8.85e-05	0.269	CACCGGATGCT
EGR3	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	14	28	+	5.51724	8.85e-05	0.0418	CCCGGCCCACGCACG
EGR3	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	29	43	+	5.51724	8.85e-05	0.0418	CTCCTCCTCCGCCTC
EGR3	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	18	32	-	5.51724	8.85e-05	0.0418	CTCCTCCTCCGCCTC
EGR3	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	20	34	-	5.51724	8.85e-05	0.0418	TCCCGCCCACGGCTG
EGR3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	85	99	+	5.51724	8.85e-05	0.0418	CTCCTCCTCCGCCTC
EGR3	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	72	86	-	5.51724	8.85e-05	0.0418	CTCCTCCTCCGCCTC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	87	101	-	5.51724	8.85e-05	0.0418	CCCGGCCCACGCACG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	27	40	-	4.35714	8.85e-05	0.379	TGGGATGGGGCCAT
Znf423	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	34	48	+	4.77528	8.85e-05	0.387	CCCTCCTTTGGGTTC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	34	48	+	4.77528	8.85e-05	0.387	CCCTCCTTTGGGTTC
Znf423	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	34	48	+	4.77528	8.85e-05	0.387	CCCTCCTTTGGGTTC
Znf423	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	34	48	+	4.77528	8.85e-05	0.387	CCCTCCTTTGGGTTC
Mafb	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	31	42	+	10.8989	8.85e-05	0.865	TCAGTGCTGACA
Mafb	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	44	55	-	10.8989	8.85e-05	0.865	CAAAAGCTGACT
Mafb	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	73	84	-	10.8989	8.85e-05	0.865	TCAGTGCTGACA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	114	+	10.9592	8.85e-05	0.204	GGCAGGTGGCC
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	114	+	10.9592	8.85e-05	0.204	GGCAGGTGGCC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	31	48	+	-15.8947	8.86e-05	0.0551	GAAAGGAAGAGACGCGGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	43	60	-	-15.8947	8.86e-05	0.0551	AGGAGGAGGGCAAGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	43	60	-	-15.8947	8.86e-05	0.0551	AGGAGGAGGGCAAGGAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	67	84	-	-15.8947	8.86e-05	0.0551	GAAAGGAAGAGACGCGGT
SPIC	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	31	44	+	10.4085	8.86e-05	0.305	AGAATGGGGACGGC
SPIC	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	71	84	-	10.4085	8.86e-05	0.305	AGAATGGGGACGGC
SPIC	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	71	84	-	10.4085	8.86e-05	0.305	AGAATGGGGACGGC
SPIC	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	71	84	-	10.4085	8.86e-05	0.305	AGAATGGGGACGGC
SPIC	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	71	84	-	10.4085	8.86e-05	0.305	AGAATGGGGACGGC
CEBPD	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	58	67	+	10.8846	8.86e-05	0.805	CTTACACAAC
Crx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	34	44	+	10.8793	8.86e-05	1	AACAGGCTTAG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	6	16	-	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	6	16	-	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	6	16	-	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	6	16	-	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	31	41	+	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	41	51	+	10.7692	8.86e-05	0.0758	CGCCGGAGGGG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	41	51	-	10.7692	8.86e-05	0.0758	CGCCGGAGGGG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	58	68	+	10.7692	8.86e-05	0.0758	CGCCTGGAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	58	68	+	10.7692	8.86e-05	0.0758	CGCCTGGAGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	63	73	+	10.7692	8.86e-05	0.0758	CGCCTGGAGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	64	74	+	10.7692	8.86e-05	0.0758	CGCCGGAGGGG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	65	75	+	10.7692	8.86e-05	0.0758	AGCCCTGGGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	55	65	-	10.7692	8.86e-05	0.0758	AGCCCTGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	55	65	-	10.7692	8.86e-05	0.0758	AGCCCTGGGCT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	58	68	-	10.7692	8.86e-05	0.0758	AGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	58	68	-	10.7692	8.86e-05	0.0758	AGCTCCAGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	63	73	-	10.7692	8.86e-05	0.0758	AGCTCCAGGCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	64	74	-	10.7692	8.86e-05	0.0758	CGCCGGAGGGG
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:118792172..118792286,+__1754.1.0.0	69	79	-	10.7692	8.86e-05	0.0758	AGCCCTGGGCT
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	74	84	-	10.7692	8.86e-05	0.0758	GGCCCGGGGCT
Rarg	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	31	46	-	-3.42857	8.86e-05	0.877	GAGGGCATGAGGGCGG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	10	21	+	10.8	8.86e-05	0.0934	CGCCCCGGGGGC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	10	21	+	10.8	8.86e-05	0.0934	CGCCCCGGGGGC
TFAP2B	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	48	59	+	10.8	8.86e-05	0.0934	TGCCCAGAGCCA
TFAP2B	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	66	77	+	10.8	8.86e-05	0.0934	AGCCCTCAGCCG
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	4	15	-	10.8	8.86e-05	0.0934	CGCCCCGGGGGC
TFAP2B	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	38	49	-	10.8	8.86e-05	0.0934	AGCCCTCAGCCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	40	51	-	10.8	8.86e-05	0.0934	CGCCCCGGGGGC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	40	51	-	10.8	8.86e-05	0.0934	CGCCCCGGGGGC
TFAP2B	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	56	67	-	10.8	8.86e-05	0.0934	TGCCCAGAGCCA
EBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	85	98	-	8.42623	8.86e-05	0.366	ACTCCCAAAAGAAC
EBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	85	98	-	8.42623	8.86e-05	0.366	ACTCCCAAAAGAAC
FOXF2	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	44	57	+	10.2667	8.86e-05	1	CTTCAGTAAACACA
FOXF2	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	36	49	-	10.2667	8.86e-05	1	CTTCAGTAAACACA
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	103	113	+	10.5306	8.86e-05	0.253	TAATGATTCAT
JUNB	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	24	34	-	10.5306	8.86e-05	0.253	TAATGATTCAT
GLI2	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	1	12	-	9.81034	8.86e-05	0.33	GCGGCCACAGAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	7	23	-	2.8	8.86e-05	0.0343	TAAGAACCGCCCCTCGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	7	23	-	2.8	8.86e-05	0.0343	TAAGAACCGCCCCTCGC
SP4	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	26	42	-	2.8	8.86e-05	0.0343	TGGGCTACGCCCAGAGA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	27	38	-	10.3684	8.86e-05	0.0386	CCTCCGCCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	27	38	-	10.3684	8.86e-05	0.0386	CCTCCGCCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	37	48	-	10.3684	8.86e-05	0.0386	CCTCCGCCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	44	55	-	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	44	55	-	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	44	55	-	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	44	55	-	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	44	55	-	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	60	71	+	10.3684	8.86e-05	0.0386	ACTACTCCCACA
SP8	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	73	84	+	10.3684	8.86e-05	0.0386	CCTCCGCCCACA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	81	93	+	9.65574	8.86e-05	0.0589	TGCCTGTGCGGCA
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	8	20	-	9.65574	8.86e-05	0.0589	AGCCCGGAAGGGC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	21	31	+	10.6504	8.86e-05	0.0272	GCCACGTCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	21	31	+	10.6504	8.86e-05	0.0272	GCCACGTCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	21	31	+	10.6504	8.86e-05	0.0272	GCCACGTCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	21	31	+	10.6504	8.86e-05	0.0272	GCCACGTCCCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	62	72	-	10.6504	8.86e-05	0.0272	GCCACGTCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	71	81	-	10.6504	8.86e-05	0.0272	AGCACGCCCCT
HEY2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	10.4655	8.86e-05	0.222	CGCACGTGCT
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	10.4655	8.86e-05	0.222	CGCACGTGCT
HEY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	10.4655	8.86e-05	0.222	CGCACGTGCT
HEY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	10.4655	8.86e-05	0.222	CGCACGTGCT
REST	WILDTYPE__mrna.flip.sense__chr4:66536146..66536260,-__1202.1.0.0	60	80	-	4.36735	8.87e-05	0.237	TGCACCGCCAAGGCGCGCTCC
REST	FLIPPED__mrna.flip.antisense__chr4:66536146..66536260,+__2511.1.0.0	35	55	+	4.36735	8.87e-05	0.237	TGCACCGCCAAGGCGCGCTCC
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	53	66	+	8.07576	8.87e-05	0.462	CAGGGCAGGGTTCA
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	52	63	-	9.93103	8.87e-05	0.365	CGGCCCACCGAG
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	100	113	-	2.81818	8.87e-05	0.386	TCCCACCCACCACG
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:25194963..25195077,+__430.1.0.0	26	40	+	9.82979	8.87e-05	0.368	GCTGCTGACGTCATC
JUND(var.2)	FLIPPED__Antisense.flip.antisense__chr2:25194915..25195029,-__2668.1.0.0	27	41	-	9.82979	8.87e-05	0.368	GCTGCTGACGTCATC
JUND(var.2)	WILDTYPE__Antisense.flip.sense__chr2:25194915..25195029,+__429.1.0.0	74	88	+	9.82979	8.87e-05	0.368	GCTGCTGACGTCATC
Esrra	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	54	64	-	6.69091	8.87e-05	1	TCCAAGGGCGT
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	12	24	+	9.08621	8.87e-05	0.0578	CCCCCTCGAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	29	41	+	9.08621	8.87e-05	0.0578	TCCCTCCCAGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	29	41	+	9.08621	8.87e-05	0.0578	TCCCTCCCAGGGA
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	34	46	+	9.08621	8.87e-05	0.0578	CGCCCCAAAGGGC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	69	81	-	9.08621	8.87e-05	0.0578	CGCCCCAAAGGGC
NRL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	45	55	-	10.5192	8.87e-05	0.823	AAATAGCTGAC
NRL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	45	55	-	10.5192	8.87e-05	0.823	AAATAGCTGAC
NRL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	45	55	-	10.5192	8.87e-05	0.823	AAATAGCTGAC
NRL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	45	55	-	10.5192	8.87e-05	0.823	AAATAGCTGAC
NRL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	45	55	-	10.5192	8.87e-05	0.823	AAATAGCTGAC
NRL	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	60	70	+	10.5192	8.87e-05	0.823	AAATAGCTGAC
EGR2	FLIPPED__Antisense.flip.antisense__chr12:120933677..120933791,+__2351.1.0.0	3	13	-	8.89655	8.87e-05	0.0862	AGGCCCACACA
EGR2	WILDTYPE__Antisense.flip.sense__chr12:120933677..120933791,-__215.1.0.0	102	112	+	8.89655	8.87e-05	0.0862	AGGCCCACACA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	5	15	+	10.4364	8.87e-05	0.0718	TGCTCCAGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	51	61	+	10.4364	8.87e-05	0.0718	CGCCGACGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	51	61	+	10.4364	8.87e-05	0.0718	CGCCGACGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	53	63	+	10.4364	8.87e-05	0.0718	ACCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	53	63	+	10.4364	8.87e-05	0.0718	ACCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	53	63	+	10.4364	8.87e-05	0.0718	ACCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	91	101	+	10.4364	8.87e-05	0.0718	CCCCCCGGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	93	103	+	10.4364	8.87e-05	0.0718	TCCCTGCGGCT
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	12	22	-	10.4364	8.87e-05	0.0718	TCCCTGCGGCT
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	94	105	-	10.3714	8.87e-05	0.226	TCCAACCACCCC
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	94	105	-	10.3714	8.87e-05	0.226	TCCAACCACCCC
NFKB2	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	29	41	-	7.39394	8.87e-05	0.264	GGGGGATTCCTCC
MEF2C	WILDTYPE__Antisense.noflip.NA__chr4:113569820..113569934,-__602.1.0.0	34	48	+	10.4576	8.87e-05	1	GAGTTAAGAATAGTA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	69	81	+	11.0816	8.87e-05	0.201	CCCACCTGCCAGA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	69	81	+	11.0816	8.87e-05	0.201	CCCACCTGCCAGA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	46	56	+	10.6897	8.87e-05	0.597	CAATCCCAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	46	56	+	10.6897	8.87e-05	0.597	CAATCCCAGCA
Gfi1b	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	23	33	-	10.6897	8.87e-05	0.597	CAATCCCAGCA
Gfi1b	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	23	33	-	10.6897	8.87e-05	0.597	CAATCCCAGCA
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	17	31	+	9.7931	8.87e-05	0.0182	GCCCCGCCCTGAATT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	17	31	+	9.7931	8.87e-05	0.0182	GCCCCGCCCTGAATT
SP2	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	28	42	+	9.7931	8.87e-05	0.0182	ACTCCGCCCCTACTA
SP2	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	27	41	-	9.7931	8.87e-05	0.0182	ACTCCGCCCCTACTA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	49	63	-	9.7931	8.87e-05	0.0182	CGCCCGCTCTCCCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	49	63	-	9.7931	8.87e-05	0.0182	CGCCCGCTCTCCCCG
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.1.0	52	66	-	9.7931	8.87e-05	0.0182	GGCGCGCCCCACCCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.1	52	66	-	9.7931	8.87e-05	0.0182	GGCGCGCCCCACCCC
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	52	66	-	9.7931	8.87e-05	0.0182	GGCGCGCCCCACCCC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	52	66	-	9.7931	8.87e-05	0.0182	GGCGCGCCCCACCCC
SP2	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	74	88	+	9.7931	8.87e-05	0.0182	ACTCCGCCCCTACTA
SP2	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	86	100	+	9.7931	8.87e-05	0.0182	TCCCCGCTTCCCTTC
SP2	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	73	87	-	9.7931	8.87e-05	0.0182	ACTCCGCCCCTACTA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	16	32	+	9.18367	8.87e-05	0.405	AGGTCAGAGGGCCGCGA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	16	32	+	9.18367	8.87e-05	0.405	AGGTCAGAGGGCCGCGA
ELF3	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	23	35	-	7.51724	8.87e-05	0.187	CGCGCGGAAGTAT
NR2F1	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	3	15	+	10.7347	8.87e-05	0.531	CCAGGGTCACGCC
NR2F1	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	21	33	+	10.7347	8.87e-05	0.531	CCAGGGTCACGCC
NR2F1	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	38	50	+	10.7347	8.87e-05	0.531	CGGGGGTCACGGC
NR2F1	FLIPPED__mrna.flip.antisense__chr15:40987292..40987406,-__2780.1.0.0	54	66	+	10.7347	8.87e-05	0.531	CCAGGGTCACGCC
NR2F1	WILDTYPE__mrna.flip.sense__chr15:40987292..40987406,+__1164.1.0.0	49	61	-	10.7347	8.87e-05	0.531	CCAGGGTCACGCC
NR2F1	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	65	77	-	10.7347	8.87e-05	0.531	CGGGGGTCACGGC
NR2F1	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	82	94	-	10.7347	8.87e-05	0.531	CCAGGGTCACGCC
IRF8	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	47	60	+	-3.83636	8.87e-05	0.788	GGGAAAAAGAAACC
IRF8	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	47	60	+	-3.83636	8.87e-05	0.788	GGGAAAAAGAAACC
Klf12	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	12	26	-	7.52459	8.87e-05	0.0731	GGCCCCGCCTCCTCA
Klf12	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	89	103	+	7.52459	8.87e-05	0.0731	GGCCCCGCCTCCTCA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	13	32	+	2.81651	8.87e-05	0.074	ACCCCGCCCCCAACCCCCCT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	13	32	+	2.81651	8.87e-05	0.074	ACCCCGCCCCCAACCCCCCT
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	13	32	+	2.81651	8.87e-05	0.074	ACCCCGCCCCCAACCCCCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	13	32	+	2.81651	8.87e-05	0.074	ACCCCGCCCCCAACCCCCCT
MSC	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	19	+	9.68293	8.87e-05	0.569	AACAGGTGTG
MSC	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	52	61	+	9.68293	8.87e-05	0.569	AAGAGCTGTG
MSC	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	56	65	+	9.68293	8.87e-05	0.569	AAGAGCTGTG
MSC	FLIPPED__Lincrna.flip.antisense__chr17:14277348..14277462,-__2654.1.0.0	92	101	+	9.68293	8.87e-05	0.569	AACAGCTGAG
MSC	WILDTYPE__Lincrna.flip.sense__chr17:14277348..14277462,+__352.1.0.0	14	23	-	9.68293	8.87e-05	0.569	AACAGCTGAG
MSC	WILDTYPE__Lincrna.noflip.NA__chr8:84824851..84824965,+__872.1.0.0	24	33	-	9.68293	8.87e-05	0.569	AACAGGTGGT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.1.0	79	88	-	9.68293	8.87e-05	0.569	AAGAGCTGTG
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:104597135..104597249,-__1441.1.0.0	79	88	-	9.68293	8.87e-05	0.569	AAGAGCTGTG
MSC	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	105	-	9.68293	8.87e-05	0.569	AACAGGTGTG
MSC	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	98	107	-	9.68293	8.87e-05	0.569	AAGAGCTGTG
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	42	60	-	10.0323	8.87e-05	0.155	GGAGGAAGTCGGCCGTGAG
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	42	60	-	10.0323	8.87e-05	0.155	GGAGGAAGTCGGCCGTGAG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	42	60	-	10.0323	8.87e-05	0.155	GGAGGAAGTCGGCCGTGAG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	8	17	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	17	26	+	10.1837	8.88e-05	0.029	AAGGCGTGGC
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	30	39	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	30	39	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	32	41	+	10.1837	8.88e-05	0.029	AAGGCGTGGC
Klf4	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	33	42	-	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	53	62	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	53	62	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	60	69	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	72	81	+	10.1837	8.88e-05	0.029	AAGGCGTGGC
Klf4	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	73	82	+	10.1837	8.88e-05	0.029	GAGGTGGGGC
MEF2B	WILDTYPE__Lincrna.noflip.NA__chr3:98699819..98699933,+__597.1.0.0	6	17	+	5.87273	8.88e-05	1	AATAAATATAGA
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	5	14	-	10.9091	8.88e-05	0.182	GAATGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.0.0	96	105	+	10.9091	8.88e-05	0.182	GAATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:102133304..102133418,+__103.1.1.0	96	105	+	10.9091	8.88e-05	0.182	GAATGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	90	99	-	10.9091	8.88e-05	0.182	GAATGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	90	99	-	10.9091	8.88e-05	0.182	GAATGGGGAA
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	101	110	+	10.9091	8.88e-05	0.182	GAATGGGGAA
Hnf4a	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	83	98	-	2.05455	8.88e-05	0.584	GGGGTCCAAGCTCAGC
RFX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	89	104	+	5.94828	8.88e-05	0.39	AGTTGCTTTGCCTACT
RFX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	89	104	+	5.94828	8.88e-05	0.39	AGTTGCTTTGCCTACT
ESR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173834005..173834119,-__33.1.0.0	28	42	-	10.2308	8.88e-05	0.488	GGGGCATGGTGGCTC
Myc	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	61	70	+	11.3273	8.88e-05	0.534	GCACGTGGCT
FEV	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	10.9615	8.88e-05	0.148	CCCGGATGTG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	10.9615	8.88e-05	0.148	CCCGGATGTG
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	11	25	+	9.15152	8.88e-05	0.368	AGGCCTGACTCGGGA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	24	38	+	9.15152	8.88e-05	0.368	AGGCCTGACTCGGGA
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	77	91	-	9.15152	8.88e-05	0.368	AGGCCTGACTCGGGA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	90	104	-	9.15152	8.88e-05	0.368	AGGCCTGACTCGGGA
NFYA	WILDTYPE__Lincrna.noflip.NA__chr21:17791642..17791756,+__496.1.0.0	52	69	+	8.47561	8.88e-05	0.225	AGTCCTTCCATTGGCTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	4	19	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	4	19	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	4	19	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	4	19	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	4	19	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	11	26	+	9.74545	8.88e-05	0.0416	TGACGCGCGCGCAGTT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	13	28	+	9.74545	8.88e-05	0.0416	TCACGCTCCCCCACCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	13	28	+	9.74545	8.88e-05	0.0416	TCACGCTCCCCCACCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	14	29	+	9.74545	8.88e-05	0.0416	GCACGCACGCGCACGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	15	30	-	9.74545	8.88e-05	0.0416	TCACGCTCCCCCACCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	19	34	-	9.74545	8.88e-05	0.0416	CTCCTCCCGCCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	19	34	-	9.74545	8.88e-05	0.0416	CTCCTCCCGCCCCCTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	38	53	+	9.74545	8.88e-05	0.0416	CTCCTCCCGCCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	38	53	+	9.74545	8.88e-05	0.0416	CTCCTCCCGCCCCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	57	72	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	57	72	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	57	72	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	57	72	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	57	72	+	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	43	58	-	9.74545	8.88e-05	0.0416	AACCTCCCGCCCACCT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	68	83	+	9.74545	8.88e-05	0.0416	CCACCCCCCTCCACTT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	68	83	+	9.74545	8.88e-05	0.0416	CCACCCCCCTCCACTT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	62	77	-	9.74545	8.88e-05	0.0416	CCACCCCCCTCCACTT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	72	87	-	9.74545	8.88e-05	0.0416	CTGCGCCCGCCCCTTC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	12	26	-	7.38571	8.88e-05	0.123	CCCGCCCCCCGGTGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	12	26	-	7.38571	8.88e-05	0.123	CCCGCCCCCCGGTGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	12	26	-	7.38571	8.88e-05	0.123	CCCGCCCCCCGGTGA
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	12	26	-	7.38571	8.88e-05	0.123	CCCGCCCCCCGGTGA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	12	26	-	7.38571	8.88e-05	0.123	CCCGCCCCCCGGTGA
PAX9	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.3.1	47	63	-	-0.763636	8.88e-05	0.586	TTTTCTGCATCACTGAA
PAX9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:209833398..209833512,-__2030.1.2.0	47	63	-	-0.763636	8.88e-05	0.586	TTTTCTGCATCACTGAA
EOMES	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	35	47	+	10.6829	8.88e-05	1	AGGGTGTGAGCTG
ZIC4	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	82	96	-	9.81818	8.88e-05	0.113	GGCGCCCCGTCGGCC
INSM1	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	3	14	-	9.03061	8.88e-05	0.197	AGGATGGGGTCA
INSM1	WILDTYPE__Antisense.noflip.NA__chr7:27135709..27135823,+__800.1.0.0	92	103	-	9.03061	8.88e-05	0.197	TGCCTGGGGGGG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	12	23	+	9.03061	8.88e-05	0.197	AGGAAGGGGGAA
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	12	23	+	9.03061	8.88e-05	0.197	AGGAAGGGGGAA
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	12	23	+	9.03061	8.88e-05	0.197	AGGAAGGGGGAA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	84	96	-	9.18033	8.88e-05	0.0646	AGCCGCCAAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	84	96	-	9.18033	8.88e-05	0.0646	AGCCGCCAAGGCC
HES7	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	45	56	-	2.31034	8.88e-05	0.218	GAGCACGAGCCG
HES7	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	45	56	-	2.31034	8.88e-05	0.218	GAGCACGAGCCG
HES7	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	60	71	+	2.31034	8.88e-05	0.218	GAGCACGAGCCG
TP73	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:47205883..47205997,+__582.1.0.0	18	35	-	7.80769	8.89e-05	0.71	AGCGGGCCGGGTCACGCT
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	9.47143	8.89e-05	0.332	GCCACGTGGC
MLX	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	9.47143	8.89e-05	0.332	GCCACGTGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	15	32	+	-15.9079	8.89e-05	0.0551	GGGCGGAGGGAAAGGAAG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	67	84	+	-15.9079	8.89e-05	0.0551	GGAAGGAGGCGGAGGAGG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	31	48	-	-15.9079	8.89e-05	0.0551	GGAAGGAGGCGGAGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	66	83	-	-15.9079	8.89e-05	0.0551	GGGCGGAGGGAAAGGAAG
ZNF263	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	4	24	-	9.08163	8.89e-05	0.0228	TAGTGAAGGGAAGAGGGAGGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	9	29	-	9.08163	8.89e-05	0.0228	TAGTGAAGGGAAGAGGGAGGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	71	91	-	9.08163	8.89e-05	0.0228	AGGAGTGGAGAGGGCGAGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr1:43824309..43824423,-__78.1.0.0	6	26	+	9.08163	8.89e-05	0.0228	GGGACAGGGCGGGGCAGGGCG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	16	36	+	9.08163	8.89e-05	0.0228	GGAGCCGGCAAGGGGAAGTGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	16	36	+	9.08163	8.89e-05	0.0228	GGAGCCGGCAAGGGGAAGTGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	38	58	+	9.08163	8.89e-05	0.0228	AAAGGAAGAAACGGCGTGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	38	58	+	9.08163	8.89e-05	0.0228	AAAGGAAGAAACGGCGTGGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	38	58	+	9.08163	8.89e-05	0.0228	AAAGGAAGAAACGGCGTGGGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	38	58	+	9.08163	8.89e-05	0.0228	AAAGGAAGAAACGGCGTGGGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	42	62	+	9.08163	8.89e-05	0.0228	CGGGGCGGCGAGGCGAGGGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	59	79	+	9.08163	8.89e-05	0.0228	GGAAGGGGAGGTGGGAGAGGC
ZNF263	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	86	106	+	9.08163	8.89e-05	0.0228	TAGTGAAGGGAAGAGGGAGGC
ZNF263	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	91	111	+	9.08163	8.89e-05	0.0228	TAGTGAAGGGAAGAGGGAGGC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	20	29	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	20	29	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	20	29	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	20	29	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	20	29	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:176176611..176176725,+__2472.1.0.0	19	28	-	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	87	96	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.0.0	87	96	+	10.1468	8.89e-05	0.0553	ACCACCCCAC
PHOX2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	8	18	+	10.68	8.89e-05	1	CAATCAAATTA
PHOX2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	8	18	+	10.68	8.89e-05	1	CAATCAAATTA
PHOX2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	8	18	+	10.68	8.89e-05	1	CAATCAAATTA
PHOX2A	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	8	18	+	10.68	8.89e-05	1	CAATCAAATTA
RXRB	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	41	54	-	-0.381818	8.89e-05	0.567	AGGGGCATAGGTTG
RXRB	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	41	54	-	-0.381818	8.89e-05	0.567	AGGGGCATAGGTTG
RXRB	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	61	74	+	-0.381818	8.89e-05	0.567	AGGGGCATAGGTTG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	9	22	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	9	22	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	32	45	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.0	29	42	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCCTTT
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.0.0	29	42	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCCTTT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.2.1	29	42	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCCTTT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr3:67705091..67705205,+__589.1.1.0	29	42	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCCTTT
EGR1	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	46	59	+	9.67308	8.89e-05	0.0304	GCCCAGCCCACGGT
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	38	51	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	56	69	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	46	59	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	64	77	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	56	69	-	9.67308	8.89e-05	0.0304	GCCCAGCCCACGGT
EGR1	FLIPPED__Lincrna.flip.antisense__chr3:67705091..67705205,-__2691.1.0.0	73	86	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCCTTT
EGR1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	73	86	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	73	86	+	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	68	81	-	9.67308	8.89e-05	0.0304	GCGCCGCCCTCATC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	68	81	-	9.67308	8.89e-05	0.0304	GCGCCGCCCTCATC
EGR1	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	93	106	-	9.67308	8.89e-05	0.0304	CCTCCTCCTCTTCC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	32	45	-	7.44262	8.89e-05	0.188	GCCACCCTGCGTCG
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	32	45	-	7.44262	8.89e-05	0.188	GCCACCCTGCGTCG
GLIS2	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	25	38	+	7.44262	8.89e-05	0.188	GGCCCCCAGCCCAG
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.1.0	7	16	-	11.75	8.89e-05	0.404	TCCACCTGGG
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150940574..150940688,-__1417.1.0.0	7	16	-	11.75	8.89e-05	0.404	TCCACCTGGG
TCF3	WILDTYPE__Lincrna.noflip.NA__chr1:31971802..31971916,+__67.1.0.0	41	50	+	11.75	8.89e-05	0.404	TCCACCTGGG
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	57	66	+	11.75	8.89e-05	0.404	GACACCTGTC
TCF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	57	66	+	11.75	8.89e-05	0.404	GACACCTGTC
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	57	66	+	11.75	8.89e-05	0.404	GACACCTGTC
ZIC1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	2	15	+	5.48936	8.89e-05	0.106	TCCACCCCGGCGCG
ZIC1	WILDTYPE__mrna.flip.sense__chr10:6622203..6622317,-__1147.1.0.0	6	19	+	5.48936	8.89e-05	0.106	GCGCACCCGCAGTG
ZIC1	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	36	49	-	5.48936	8.89e-05	0.106	GCGCCCCCGCGGTC
ZIC1	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	66	79	+	5.48936	8.89e-05	0.106	GCGCCCCCGCGGTC
ZIC1	FLIPPED__mrna.flip.antisense__chr10:6622203..6622317,+__2478.1.0.0	96	109	-	5.48936	8.89e-05	0.106	GCGCACCCGCAGTG
CTCF	FLIPPED__mrna.flip.antisense__chr3:160117281..160117395,+__2531.1.0.0	45	63	+	8.04918	8.89e-05	0.133	CGACAATAAGATGGCGGTG
CTCF	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	40	58	-	8.04918	8.89e-05	0.133	TCCCCGGCGGGTGGAGCGG
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	58	76	+	8.04918	8.89e-05	0.133	CACCCGGAAGGCGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	58	76	+	8.04918	8.89e-05	0.133	CACCCGGAAGGCGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	58	76	+	8.04918	8.89e-05	0.133	CACCCGGAAGGCGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.0	58	76	+	8.04918	8.89e-05	0.133	CACCCGGAAGGCGGCGGAG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.3.1	58	76	+	8.04918	8.89e-05	0.133	CACCCGGAAGGCGGCGGAG
CTCF	WILDTYPE__mrna.flip.sense__chr3:160117281..160117395,-__1323.1.0.0	52	70	-	8.04918	8.89e-05	0.133	CGACAATAAGATGGCGGTG
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	6	16	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	6	16	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	18	28	+	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	32	42	+	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	32	42	+	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	34	44	+	10.1724	8.89e-05	0.0512	AGGCGCGAGCC
E2F4	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	35	45	+	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	46	56	+	10.1724	8.89e-05	0.0512	GGGCGCGGAGG
E2F4	FLIPPED__Antisense.flip.antisense__chr8:144099777..144099891,+__2433.1.0.0	47	57	+	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	38	48	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	38	48	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	38	48	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	38	48	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	54	64	+	10.1724	8.89e-05	0.0512	GGGCGCGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	50	60	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	50	60	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	51	61	-	10.1724	8.89e-05	0.0512	GGGCGCGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	62	72	+	10.1724	8.89e-05	0.0512	GGGCGCGGAGG
E2F4	WILDTYPE__Antisense.flip.sense__chr8:144099777..144099891,-__842.1.0.0	58	68	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	70	80	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	70	80	-	10.1724	8.89e-05	0.0512	CAGCGGGAGCT
E2F4	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	71	81	-	10.1724	8.89e-05	0.0512	AGGCGCGAGCC
E2F4	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	73	83	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	87	97	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	99	109	+	10.1724	8.89e-05	0.0512	GCGCGGGGACC
E2F4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	91	101	-	10.1724	8.89e-05	0.0512	GCGCGGGGACC
STAT1::STAT2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	85	99	+	8.93939	8.89e-05	0.355	GCCGTTTCGGTTCTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	85	99	+	8.93939	8.89e-05	0.355	GCCGTTTCGGTTCTT
TFAP2B(var.2)	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	29	39	+	10.4182	8.89e-05	0.0718	CGCCTCCGGGT
TFAP2B(var.2)	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	76	86	-	10.4182	8.89e-05	0.0718	CGCCTCCGGGT
IRF7	WILDTYPE__Enhancer.noflip.NA__chr9:102586090..102586204,+__1921.1.0.0	33	46	-	7.95161	8.89e-05	0.785	CAGAAAGGGAAAGA
IRF7	WILDTYPE__Enhancer.noflip.NA__chr9:102586089..102586203,-__2214.1.0.0	68	81	+	7.95161	8.89e-05	0.785	CAGAAAGGGAAAGA
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	+	11.1463	8.89e-05	0.199	AGCACGTGGG
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	+	11.1463	8.89e-05	0.199	AGCACGTGGG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	+	11.1463	8.89e-05	0.199	AGCACGTGCG
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	+	11.1463	8.89e-05	0.199	AGCACGTGCG
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	+	11.1463	8.89e-05	0.199	AGCACGTGCG
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	+	11.1463	8.89e-05	0.199	AGCACGTGCG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	-	11.1463	8.89e-05	0.199	AGCACGTGGG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr16:89119327..89119441,-__349.1.0.0	72	86	+	9.81818	8.89e-05	0.345	TAAGAGGGAGAGCAA
PRDM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	25	39	-	9.81818	8.89e-05	0.345	AAAAAAAAAAAGTGT
PRDM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	25	39	-	9.81818	8.89e-05	0.345	AAAAAAAAAAAGTGT
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	48	61	-	9.15385	8.89e-05	0.529	ACGGCCACGTGAGG
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	48	61	-	9.15385	8.89e-05	0.529	ACGGCCACGTGAGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	15	28	-	4.72449	8.9e-05	0.077	GGGGGGGAGGCGGG
PLAG1	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	23	36	-	4.72449	8.9e-05	0.077	GGCGGGGAGGGGGG
PLAG1	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	79	92	+	4.72449	8.9e-05	0.077	GGCGGGGAGGGGGG
RFX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	96	111	-	9.33333	8.9e-05	0.4	CATTGTCATGGTTATT
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	96	111	-	9.33333	8.9e-05	0.4	CATTGTCATGGTTATT
RFX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	96	111	-	9.33333	8.9e-05	0.4	CATTGTCATGGTTATT
RFX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	96	111	-	9.33333	8.9e-05	0.4	CATTGTCATGGTTATT
ETV6	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	8	17	+	10.7885	8.9e-05	0.126	TGAGGAAGTA
Klf1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	41	51	+	10.2273	8.9e-05	0.0567	CGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.0.0	35	45	-	10.2273	8.9e-05	0.0567	CGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433517..219433631,+__1563.1.1.0	35	45	-	10.2273	8.9e-05	0.0567	CGCTCCGCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	54	64	+	10.2273	8.9e-05	0.0567	CGCTCCGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	54	64	+	10.2273	8.9e-05	0.0567	CGCTCCGCCCA
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	74	84	-	10.7091	8.9e-05	0.0778	CGACTTCCTGA
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	74	84	-	10.7091	8.9e-05	0.0778	CGACTTCCTGA
Pparg::Rxra	WILDTYPE__Lincrna.noflip.NA__chr3:119814016..119814130,+__542.1.0.0	42	56	-	10.4144	8.9e-05	0.19	CGGGGCCGAAGGCCA
EGR3	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	16	30	-	5.5	8.9e-05	0.0418	CCCCGCCCTCCCAGC
EGR3	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	85	99	+	5.5	8.9e-05	0.0418	CCCCGCCCTCCCAGC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	81	94	+	10.1212	8.9e-05	0.0687	CCGAGCGAAGCCTG
FOXA1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	4	18	+	10.8571	8.9e-05	1	CGTTTGTTTGCAGAG
FOXA1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	4	18	+	10.8571	8.9e-05	1	CGTTTGTTTGCAGAG
FOXA1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	14	28	+	10.8571	8.9e-05	1	TTCGTGTTTGCAATG
FOXA1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	87	101	-	10.8571	8.9e-05	1	TTCGTGTTTGCAATG
FOXA1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	87	101	-	10.8571	8.9e-05	1	TTCGTGTTTGCAATG
FOXA1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	87	101	-	10.8571	8.9e-05	1	TTCGTGTTTGCAATG
FOXA1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	87	101	-	10.8571	8.9e-05	1	TTCGTGTTTGCAATG
KLF14	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	44	57	-	8.05172	8.9e-05	0.0409	CGTCCCGCCCCTGG
KLF14	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	58	71	+	8.05172	8.9e-05	0.0409	CGTCCCGCCCCTGG
HINFP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	10	21	+	10.1364	8.9e-05	0.109	CCGCCTCCGCCC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	10	21	+	10.1364	8.9e-05	0.109	CCGCCTCCGCCC
HINFP	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	63	74	-	10.1364	8.9e-05	0.109	TGCGGTCCGCTG
HINFP	WILDTYPE__Antisense.noflip.NA__chr10:89102178..89102292,-__142.1.0.0	98	109	+	10.1364	8.9e-05	0.109	CCGCCTCCGCCC
NFATC3	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	2	11	+	10.7879	8.9e-05	1	TGTTTCCATC
NFATC3	WILDTYPE__Antisense.noflip.NA__chr11:131533439..131533553,-__167.1.0.0	37	46	+	10.7879	8.9e-05	1	TGTTTCCATC
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	5	14	+	9.56604	8.9e-05	1	TAATGAATTA
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	5	14	+	9.56604	8.9e-05	1	TAATGAATTA
PAX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	5	14	+	9.56604	8.9e-05	1	TAATGAATTA
PAX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	5	14	+	9.56604	8.9e-05	1	TAATGAATTA
SP4	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	2	18	+	2.78182	8.9e-05	0.0343	ACGGCCCCTCCTCCTGG
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.1.0	3	19	+	2.78182	8.9e-05	0.0343	GAAGCGCCGCCTCCGCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	3	19	+	2.78182	8.9e-05	0.0343	GAAGCGCCGCCTCCGCG
SP4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	25	41	+	2.78182	8.9e-05	0.0343	GAAGATCCGCCCCGCGC
SP4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	74	90	-	2.78182	8.9e-05	0.0343	GAAGATCCGCCCCGCGC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	97	113	-	2.78182	8.9e-05	0.0343	ACGGCCCCTCCTCCTGG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	97	113	-	2.78182	8.9e-05	0.0343	ACGGCCCCTCCTCCTGG
HOXB3	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	17	26	-	9.92	8.9e-05	1	TCTCATTAGC
HOXB3	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	46	55	+	9.92	8.9e-05	1	TCTCATTAGC
POU3F4	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	22	30	+	10.7143	8.9e-05	1	TATGCAGAT
POU3F4	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	39	47	+	10.7143	8.9e-05	1	TATGCAGAT
POU3F4	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	68	76	-	10.7143	8.9e-05	1	TATGCAGAT
ETV2	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	41	51	+	9.77049	8.9e-05	0.187	CAGCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	64	74	-	9.77049	8.9e-05	0.187	CAGCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	64	74	-	9.77049	8.9e-05	0.187	CAGCGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	99	109	-	9.77049	8.9e-05	0.187	CAGCGGAAGTC
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	99	109	-	9.77049	8.9e-05	0.187	CAGCGGAAGTC
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	4	12	+	8.91379	8.91e-05	0.37	ATGAGTCAA
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	4	12	+	8.91379	8.91e-05	0.37	ATGAGTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	37	45	+	8.91379	8.91e-05	0.37	ATGAGTCAA
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	50	58	+	8.91379	8.91e-05	0.37	ATGAGTCAA
JDP2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	57	65	-	8.91379	8.91e-05	0.37	ATGAGTCAA
JDP2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	70	78	-	8.91379	8.91e-05	0.37	ATGAGTCAA
ZBTB33	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	90	104	-	9.69697	8.91e-05	0.125	CTCCCGCGCCTTCCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	90	104	-	9.69697	8.91e-05	0.125	CTCCCGCGCCTTCCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	90	104	-	9.69697	8.91e-05	0.125	CTCCCGCGCCTTCCG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	90	104	-	9.69697	8.91e-05	0.125	CTCCCGCGCCTTCCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	90	104	-	9.69697	8.91e-05	0.125	CTCCCGCGCCTTCCG
SOX21	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	95	109	+	0.469388	8.91e-05	1	AGCAATGCGAGAGTA
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	28	37	+	11.1034	8.91e-05	0.659	CCTTTCTCTC
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	28	37	+	11.1034	8.91e-05	0.659	CCTTTCTCTC
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	28	37	+	11.1034	8.91e-05	0.659	CCTTTCTCTC
NRF1	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	13	23	+	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	19	29	-	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	39	49	+	9.32727	8.91e-05	0.0241	GCGTCTGCCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	30	40	-	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	33	43	-	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	47	57	-	9.32727	8.91e-05	0.0241	GCGTCTGCCCC
NRF1	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	72	82	+	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	66	76	-	9.32727	8.91e-05	0.0241	GCGTCTGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	66	76	-	9.32727	8.91e-05	0.0241	GCGTCTGCCCC
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	85	95	+	9.32727	8.91e-05	0.0241	GCGTCTGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	86	96	+	9.32727	8.91e-05	0.0241	CAGCACGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	92	102	-	9.32727	8.91e-05	0.0241	CAGCACGCGCG
SRF	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	65	80	-	4.2623	8.91e-05	1	TCCCCAGAGAAGGGGA
GCM2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	28	37	-	10.7705	8.91e-05	0.726	GACGCGGGTA
GCM2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	81	90	-	10.7705	8.91e-05	0.726	GACGCGGGTA
TEAD4	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	73	82	+	11	8.91e-05	0.839	GACATTCCGG
TEAD4	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	33	42	-	11	8.91e-05	0.839	GACATTCCGG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	47	58	+	10.7653	8.91e-05	0.0876	CGGCTCAGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	47	58	+	10.7653	8.91e-05	0.0876	CGGCTCAGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	67	78	+	10.7653	8.91e-05	0.0876	CGCCCTGAGCCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	67	78	+	10.7653	8.91e-05	0.0876	CGCCCTGAGCCG
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	85	+	10.7653	8.91e-05	0.0876	CGCCCGAGGCGA
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	30	41	-	10.7653	8.91e-05	0.0876	CGCCCGAGGCGA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	47	58	-	10.7653	8.91e-05	0.0876	CGCCCTGAGCCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	47	58	-	10.7653	8.91e-05	0.0876	CGCCCTGAGCCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	67	78	-	10.7653	8.91e-05	0.0876	CGGCTCAGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	67	78	-	10.7653	8.91e-05	0.0876	CGGCTCAGGGCG
ERF	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	44	53	-	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	62	71	+	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	62	71	+	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	67	76	+	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	67	76	+	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	67	76	+	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	99	-	10.5429	8.91e-05	0.126	GCCGGAAGCT
ERF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	99	-	10.5429	8.91e-05	0.126	GCCGGAAGCT
Ar	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	28	44	-	5.75862	8.91e-05	0.882	TGGGACGGCGTGCTCCC
Ar	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	71	87	+	5.75862	8.91e-05	0.882	TGGGACGGCGTGCTCCC
GCM1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	5	15	-	10.3061	8.91e-05	0.553	GCTGCGGGTCG
GCM1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	100	110	+	10.3061	8.91e-05	0.553	GCTGCGGGTCG
GCM1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	100	110	+	10.3061	8.91e-05	0.553	GCTGCGGGTCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	96	108	+	9.63934	8.91e-05	0.0589	CGCCCGCGCGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.1.0	39	51	-	9.63934	8.91e-05	0.0589	ACCCCTGGCGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.0.0	39	51	-	9.63934	8.91e-05	0.0589	ACCCCTGGCGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.1	39	51	-	9.63934	8.91e-05	0.0589	ACCCCTGGCGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:27529773..27529887,-__1710.1.2.0	39	51	-	9.63934	8.91e-05	0.0589	ACCCCTGGCGGCC
EBF1	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	27	40	+	8.40984	8.91e-05	0.366	GATCCCCCGGGGCA
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.0	34	45	-	9.02041	8.91e-05	0.197	CGCCTGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.2.1	34	45	-	9.02041	8.91e-05	0.197	CGCCTGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.1.0	34	45	-	9.02041	8.91e-05	0.197	CGCCTGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65405527..65405641,+__1474.1.0.0	34	45	-	9.02041	8.91e-05	0.197	CGCCTGGGGGCG
JUN	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	31	43	+	9.53061	8.91e-05	0.341	CGTCTGACGTCAT
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr6:113952414..113952528,-__2310.1.0.0	30	42	+	7.37879	8.92e-05	0.265	AAGGGAAGTCCCC
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	1	16	+	0.275862	8.92e-05	0.47	GACACATGATCCAAAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	26	43	+	-15.9211	8.92e-05	0.0551	TGCAGGAAGCAGGGAGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	43	60	+	-15.9211	8.92e-05	0.0551	GGAAGGTGGAAAAGAGGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	43	60	+	-15.9211	8.92e-05	0.0551	GGAAGGTGGAAAAGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	50	67	+	-15.9211	8.92e-05	0.0551	GGCAGGAAGAGGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	50	67	+	-15.9211	8.92e-05	0.0551	GGCAGGAAGAGGGGAGGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:241195438..241195552,-__428.1.0.0	56	73	+	-15.9211	8.92e-05	0.0551	GGCAGAAAGCAAGGCGCT
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	73	90	+	-15.9211	8.92e-05	0.0551	GGGCGGGAGGGCGGAGGA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	25	42	-	-15.9211	8.92e-05	0.0551	GGGCGGGAGGGCGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	28	45	-	-15.9211	8.92e-05	0.0551	TGCAGGAAGCAGGGAGAG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	65	82	-	-15.9211	8.92e-05	0.0551	GGCAGGAAGAGGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	65	82	-	-15.9211	8.92e-05	0.0551	GGCAGGAAGAGGGGAGGC
SP1	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	6	16	+	10.25	8.92e-05	0.0206	TCTCCGCCCTG
SP1	FLIPPED__Enhancer.flip.antisense__chr10:30782567..30782681,+__2561.1.0.0	11	21	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	26	36	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	26	36	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	26	36	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782546..30782660,+__1844.1.0.0	32	42	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	42	52	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	42	52	-	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	52	62	+	10.25	8.92e-05	0.0206	ACTCCGCCCAT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	59	69	+	10.25	8.92e-05	0.0206	CGCCCTCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	53	63	-	10.25	8.92e-05	0.0206	ACTCCGCCCAT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	53	63	-	10.25	8.92e-05	0.0206	ACTCCGCCCAT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	53	63	-	10.25	8.92e-05	0.0206	ACTCCGCCCAT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	53	63	-	10.25	8.92e-05	0.0206	ACTCCGCCCAT
SP1	FLIPPED__Enhancer.flip.antisense__chr10:30782546..30782660,-__2845.1.0.0	73	83	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	79	89	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	79	89	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	79	89	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	79	89	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr10:30782567..30782681,-__2137.1.0.0	94	104	+	10.25	8.92e-05	0.0206	AGCCCTCCTCC
Foxq1	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	94	104	+	10.9796	8.92e-05	1	TGCTGTTTAGT
Foxq1	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	14	24	-	10.9796	8.92e-05	1	TGCTGTTTAGT
Hnf4a	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	36	51	-	2.03636	8.92e-05	0.584	GGGGTCAAGGGGCGGG
Hnf4a	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	64	79	+	2.03636	8.92e-05	0.584	GGGGTCAAGGGGCGGG
SP8	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	17	28	-	10.3553	8.92e-05	0.0387	GCCCCCGCCCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	33	44	-	10.3553	8.92e-05	0.0387	ACACCGCCCAGT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	74	85	-	10.3553	8.92e-05	0.0387	GACACCGCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	74	85	-	10.3553	8.92e-05	0.0387	GACACCGCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	7	18	+	10.3553	8.92e-05	0.0387	GCCCCCGCCCCT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	7	18	+	10.3553	8.92e-05	0.0387	GCCCCCGCCCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr17:70588908..70589022,-__369.1.0.0	17	28	+	10.3553	8.92e-05	0.0387	GCTCCGCCCCGT
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	87	98	+	10.3553	8.92e-05	0.0387	GCCCCCGCCCCT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	87	98	+	10.3553	8.92e-05	0.0387	GCCCCCGCCCCT
NR4A2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	74	81	+	11.2929	8.92e-05	0.863	AAGATCAC
NR4A2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	74	81	+	11.2929	8.92e-05	0.863	AAGATCAC
NR4A2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	74	81	+	11.2929	8.92e-05	0.863	AAGATCAC
NR4A2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	102	109	+	11.2929	8.92e-05	0.863	AAGATCAC
NR4A2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	102	109	+	11.2929	8.92e-05	0.863	AAGATCAC
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	21	28	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	21	28	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	FLIPPED__Antisense.flip.antisense__chr4:66536255..66536369,-__2699.1.0.0	34	41	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	FLIPPED__Enhancer.flip.antisense__chr18:21417660..21417774,-__2890.1.0.0	39	46	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	47	54	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	47	54	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.1.0	49	56	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417670..21417784,-__2246.1.0.0	49	56	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	60	67	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	65	72	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE__Antisense.flip.sense__chr6:111804714..111804828,+__729.1.0.0	78	85	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911741..134911855,-__2115.1.0.0	79	86	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.1.0	104	111	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893812..3893926,+__1746.1.0.0	104	111	-	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	1	8	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	13	20	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:134911743..134911857,+__1822.1.0.0	27	34	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	FLIPPED__Antisense.flip.antisense__chr6:111804714..111804828,-__2711.1.0.0	30	37	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.0.0	37	44	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.1.0	37	44	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.0	37	44	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:3893845..3893959,-__2039.1.2.1	37	44	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	FLIPPED__Enhancer.flip.antisense__chr18:21417670..21417784,+__2606.1.0.0	59	66	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.0.0	69	76	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr18:21417660..21417774,+__1953.1.1.0	69	76	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.0.0	74	81	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:66536255..66536369,+__636.1.1.0	74	81	+	10.8571	8.92e-05	0.811	AAGTGTGA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	2	9	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	2	9	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.0.0	8	15	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	8	15	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	15	22	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	28	35	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	28	35	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	38	45	+	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	44	51	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	44	51	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	56	63	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	56	63	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	56	63	-	11.102	8.92e-05	0.763	AGGTGTCA
TBX1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	93	100	+	11.102	8.92e-05	0.763	AGGTGTCA
NR4A2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.0.0	4	11	-	11.2929	8.92e-05	0.863	AAGATCAC
NR4A2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:187867922..187868036,+__416.1.1.0	4	11	-	11.2929	8.92e-05	0.863	AAGATCAC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	1	20	-	2.79817	8.92e-05	0.074	TCACCACTCCACCACCTCCC
RREB1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	41	60	+	2.79817	8.92e-05	0.074	TCACCACTCCACCACCTCCC
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	1	11	-	10.3279	8.92e-05	0.0788	CCGGAAGGAAG
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	20	30	+	10.3279	8.92e-05	0.0788	CCGGAACTTGC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.2.0	39	49	+	10.3279	8.92e-05	0.0788	GAGGAAGCGCC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.0.0	39	49	+	10.3279	8.92e-05	0.0788	GAGGAAGCGCC
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:99129460..99129574,+__1703.1.3.0	39	49	+	10.3279	8.92e-05	0.0788	GAGGAAGCGCC
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr21:25800972..25801086,+__499.1.0.0	58	68	+	10.3279	8.92e-05	0.0788	CCGGAAGGAAG
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	66	76	+	10.3279	8.92e-05	0.0788	CCGGAAGGAAG
Gabpa	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	63	73	-	10.3279	8.92e-05	0.0788	CCGGAACTTGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	6	17	+	10.8182	8.92e-05	0.0579	CGCCGCCGGCCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	6	17	+	10.8182	8.92e-05	0.0579	CGCCGCCGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	6	17	+	10.8182	8.92e-05	0.0579	CGCCGCCGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258750..203258864,-__2297.1.0.0	23	34	+	10.8182	8.92e-05	0.0579	AGCCTCCGGGGA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	27	38	+	10.8182	8.92e-05	0.0579	CGCCCTGGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	16	27	-	10.8182	8.92e-05	0.0579	TGCCGCGGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	17	28	-	10.8182	8.92e-05	0.0579	CGCCCTGGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	41	52	+	10.8182	8.92e-05	0.0579	CGCCGCCGGCCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	41	52	+	10.8182	8.92e-05	0.0579	CGCCGCCGGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:203258795..203258909,+__2004.1.0.0	36	47	-	10.8182	8.92e-05	0.0579	AGCCTCCGGGGA
Klf12	WILDTYPE__mrna.noflip.NA__chr12:118573762..118573876,-__994.1.0.0	26	40	+	7.5082	8.93e-05	0.0731	CGTCACGCCCACCGC
Klf12	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	23	37	-	7.5082	8.93e-05	0.0731	GGACCCGCCCCCAGC
Klf12	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	78	92	+	7.5082	8.93e-05	0.0731	GGACCCGCCCCCAGC
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	7	16	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	15	24	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.1.0	15	24	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	15	24	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	17	26	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	22	31	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	29	38	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	22	31	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	22	31	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	22	31	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	22	31	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	32	41	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	32	41	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	32	41	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	33	42	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	33	42	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	33	42	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	33	42	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	40	49	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	34	43	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	34	43	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	35	44	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	45	54	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	55	64	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	51	60	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	51	60	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	54	63	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	71	80	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	84	93	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	84	93	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	93	102	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	93	102	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	93	102	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	93	102	+	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	91	100	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	99	108	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	99	108	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.1.0	104	113	-	10.899	8.93e-05	0.182	GGAGGCGGAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:162101170..162101284,+__1718.1.0.0	104	113	-	10.899	8.93e-05	0.182	GGAGGCGGAG
Nr1h3::Rxra	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	19	37	-	10.129	8.93e-05	0.674	TGACTTCCGGTTCCCGCGC
Nr1h3::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	78	96	+	10.129	8.93e-05	0.674	TGACTTCCGGTTCCCGCGC
Nr1h3::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	78	96	+	10.129	8.93e-05	0.674	TGACTTCCGGTTCCCGCGC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	+	9.16393	8.93e-05	0.0648	AGCCCGAGCGGCG
KLF13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	73	90	-	3.65517	8.93e-05	0.352	TGGCCCCGCCCCTCTTGC
KLF13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	73	90	-	3.65517	8.93e-05	0.352	TGGCCCCGCCCCTCTTGC
IRF8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	4	17	-	-3.87273	8.93e-05	0.788	CCGGAAATGAAACC
IRF8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	4	17	-	-3.87273	8.93e-05	0.788	CCGGAAATGAAACC
MTF1	WILDTYPE__Lincrna.noflip.NA__chr2:98280645..98280759,+__455.1.0.0	92	105	+	5.4878	8.93e-05	0.523	TGTGCGCGCGGCCG
HLF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.1	28	39	-	11.1695	8.93e-05	1	GCTTACGTCATC
HLF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	28	39	-	11.1695	8.93e-05	1	GCTTACGTCATC
HLF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	28	39	-	11.1695	8.93e-05	1	GCTTACGTCATC
HLF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.1.0	28	39	-	11.1695	8.93e-05	1	GCTTACGTCATC
TFAP2A	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	36	46	-	10.8909	8.93e-05	0.0559	AGCCCCCGGGA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	99	109	-	10.8909	8.93e-05	0.0559	ACCCTCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	99	109	-	10.8909	8.93e-05	0.0559	ACCCTCAGGGA
TFAP2A	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	99	109	-	10.8909	8.93e-05	0.0559	ACCCTCAGGGA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	99	109	-	10.8909	8.93e-05	0.0559	ACCCTCAGGGA
Gfi1b	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	63	73	+	10.6724	8.93e-05	0.597	CAAGCACAGCA
Gfi1b	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	42	52	-	10.6724	8.93e-05	0.597	CAAGCACAGCA
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	5	17	-	10.2295	8.93e-05	0.359	GGGCCTGGCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	24	36	-	10.2295	8.93e-05	0.359	CTGTCTTGCGCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	88	100	-	10.2295	8.93e-05	0.359	GGGCCTGGCACCC
SMAD2::SMAD3::SMAD4	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	15	27	+	10.2295	8.93e-05	0.359	GGGCCTGGCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	26	38	+	10.2295	8.93e-05	0.359	CTGCCTCGCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	26	38	+	10.2295	8.93e-05	0.359	CTGCCTCGCCCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	49	61	+	10.2295	8.93e-05	0.359	GGGCCTGGCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	58	70	+	10.2295	8.93e-05	0.359	CTGTCTTGCGCCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	98	110	+	10.2295	8.93e-05	0.359	GGGCCTGGCACCC
HSF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	42	54	-	10.2439	8.93e-05	1	TTCCGGAAAACTC
HSF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	42	54	-	10.2439	8.93e-05	1	TTCCGGAAAACTC
HSF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	42	54	-	10.2439	8.93e-05	1	TTCCGGAAAACTC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	90	101	+	10	8.93e-05	0.368	CAGGATGGTGGA
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	90	101	+	10	8.93e-05	0.368	CAGGATGGTGGA
HOXA10	WILDTYPE__Enhancer.noflip.NA__chr6:109288477..109288591,+__1810.1.0.0	80	90	+	10.5849	8.93e-05	1	AGCCATAAATA
SP2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	17	31	+	9.77586	8.93e-05	0.0183	TCCCTTCCCCCTCCA
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	28	42	+	9.77586	8.93e-05	0.0183	CGCCCTCCCTGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	28	42	+	9.77586	8.93e-05	0.0183	CGCCCTCCCTGCGCC
MYBL2	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	28	42	+	8.65574	8.94e-05	1	GACAGTTCACCTGCC
MSC	FLIPPED__Antisense.flip.antisense__chr18:3594030..3594144,-__2660.1.0.0	24	33	+	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	49	58	+	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	49	58	+	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	97	106	+	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	97	106	+	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.1.0	82	91	-	9.63415	8.94e-05	0.569	GGCAGCTGCT
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr18:3594030..3594144,+__374.1.0.0	82	91	-	9.63415	8.94e-05	0.569	GGCAGCTGCT
Mafb	WILDTYPE__mrna.noflip.NA__chr2:175499240..175499354,-__1055.1.0.0	86	97	-	10.8876	8.94e-05	0.865	AATCTGCTGAAA
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	46	62	-	4.6	8.94e-05	0.619	AGTCCCGCGCCGCTGGG
Myod1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	78	90	+	11.0612	8.94e-05	0.202	GCCAGCTGGCACT
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	28	40	+	10.39	8.94e-05	1	GAGATGCAAATGT
T	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	5	20	-	7.13462	8.94e-05	1	TCGCACGCGCGTGCGC
T	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	95	110	+	7.13462	8.94e-05	1	TCGCACGCGCGTGCGC
HIC2	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	19	27	+	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	92	100	+	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	15	23	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	18	26	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	18	26	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	18	26	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	18	26	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	44	52	-	10.7091	8.94e-05	0.424	GTGCCAGCC
HIC2	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	88	96	-	10.7091	8.94e-05	0.424	GTGCCAGCC
Hoxc9	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	21	33	+	10.5397	8.94e-05	1	GGCATTAAATCTG
Hoxc9	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	82	94	-	10.5397	8.94e-05	1	GGCATTAAATCTG
EHF	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	20	31	+	9.62295	8.94e-05	0.145	AAGCAGGAAATT
EHF	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	10	21	-	9.62295	8.94e-05	0.145	AAGCAGGAAATT
MEOX1	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	13	22	-	10.9818	8.94e-05	1	GCTAATTATA
MEOX1	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	77	86	+	10.9818	8.94e-05	1	GCTAATTATA
Rarg	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	12	27	+	-3.46939	8.94e-05	0.877	GAGGGGACGGGGTCAT
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	58	-	11.4286	8.94e-05	0.422	CGCAGCTGCA
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	58	-	11.4286	8.94e-05	0.422	CGCAGCTGCA
TCF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	11	+	11.4286	8.94e-05	0.422	CGCAGCTGCA
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	11	+	11.4286	8.94e-05	0.422	CGCAGCTGCA
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	11	+	11.4286	8.94e-05	0.422	CGCAGCTGCA
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	32	45	-	9.5	8.94e-05	0.324	GTTCCCACAGTGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	32	45	-	9.5	8.94e-05	0.324	GTTCCCACAGTGAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	32	45	-	9.5	8.94e-05	0.324	GTTCCCACAGTGAC
Rfx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	32	45	-	9.5	8.94e-05	0.324	GTTCCCACAGTGAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	32	45	-	9.5	8.94e-05	0.324	GTTCCCACAGTGAC
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	4	17	-	7.93548	8.94e-05	0.785	CCGGAAATGAAACC
IRF7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	4	17	-	7.93548	8.94e-05	0.785	CCGGAAATGAAACC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	17	30	-	7.42623	8.94e-05	0.189	TCCCCCCCGCCCCC
NFIX	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	6	14	+	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	13	21	+	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	13	21	+	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	13	21	+	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	16	24	+	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	18	26	-	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	21	29	-	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	41	49	-	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	50	58	+	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	51	59	+	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	52	60	-	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	56	64	-	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	56	64	-	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	89	97	+	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	91	99	-	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	94	102	-	10.234	8.94e-05	0.758	CGTGCCAGC
NFIX	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	94	102	-	10.234	8.94e-05	0.758	GGTGCCAGG
NFIX	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	101	109	-	10.234	8.94e-05	0.758	GGTGCCAGG
Gmeb1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	13	29	+	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	13	29	+	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	33	49	+	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	33	49	+	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	30	46	-	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	30	46	-	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
Gmeb1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	86	102	-	10.5263	8.94e-05	0.668	TCCGTGACGTCACAAGG
GLIS3	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	67	80	+	2.78788	8.94e-05	0.387	GGCCTCCTGGGACG
PPARG	WILDTYPE__Lincrna.noflip.NA__chr12:122501226..122501340,+__216.1.0.0	12	31	+	6.3	8.95e-05	1	CTAGATCACTGTCTCACAGT
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	50	69	-	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	50	69	-	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
RREB1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	81	100	-	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	15	34	+	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	15	34	+	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
RREB1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	46	65	+	2.78899	8.95e-05	0.074	CCCGAGAGCACCCCCTCCCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	29	45	-	2.76364	8.95e-05	0.0344	AACGACCCGCCCTCGGG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	10	20	+	9.7541	8.95e-05	0.187	TACAGGAAACC
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	10	20	+	9.7541	8.95e-05	0.187	TACAGGAAACC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	13	27	-	5.48276	8.95e-05	0.0418	CCACACCTCCTCACT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	13	27	-	5.48276	8.95e-05	0.0418	CCACACCTCCTCACT
EGR3	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	66	80	-	5.48276	8.95e-05	0.0418	CAACCCCCACCCTTC
ELF4	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	20	31	+	8.39344	8.95e-05	0.124	TCTCAGGAAGTG
TP73	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	96	113	+	7.78846	8.95e-05	0.71	TGCTGGCCCGGGCTCGCC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	22	+	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	22	+	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	40	+	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TFAP2B	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	76	87	+	10.7818	8.95e-05	0.0934	CGCCCCACGGCC
TFAP2B	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	28	39	-	10.7818	8.95e-05	0.0934	CGCCCCACGGCC
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	50	-	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	50	-	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	74	-	10.7818	8.95e-05	0.0934	GCCCCGGGGGCG
TBX21	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	27	36	+	10.2727	8.95e-05	1	CACGTGTGAA
TBX21	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	79	88	-	10.2727	8.95e-05	1	CACGTGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	79	88	-	10.2727	8.95e-05	1	CACGTGTGAA
USF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	93	103	-	10.4286	8.95e-05	0.237	ATCATGTGGCT
USF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	93	103	-	10.4286	8.95e-05	0.237	ATCATGTGGCT
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	38	55	+	-15.9342	8.95e-05	0.0552	GGAAGGGGAAGGGGAAGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	60	77	-	-15.9342	8.95e-05	0.0552	GGAAGGGGAAGGGGAAGG
EGR2	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	12	22	+	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	2	12	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	2	12	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	19	29	+	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	18	28	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	18	28	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	18	28	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	103	113	+	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
EGR2	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	93	103	-	8.87931	8.95e-05	0.0862	CCGCCCCCTCT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.0.0	5	19	-	10.4054	8.95e-05	0.19	CCTGGAGAAAGGGCT
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:23755067..23755181,+__1488.1.1.0	5	19	-	10.4054	8.95e-05	0.19	CCTGGAGAAAGGGCT
CREB3	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	-	9.05714	8.95e-05	0.312	CCGTGACGTCACGG
CREB3	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	-	9.05714	8.95e-05	0.312	CCGTGACGTCACGG
CREB3	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	36	49	+	9.05714	8.95e-05	0.312	CCGTGACGTCACGG
CREB3	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	66	79	+	9.05714	8.95e-05	0.312	CCGTGACGTCACGG
PLAG1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	100	113	-	4.70408	8.95e-05	0.0772	GGTGGGGAGGGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	2	15	+	4.70408	8.95e-05	0.0772	GGTGGGGAGGGGGG
TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	22	31	-	11.7308	8.95e-05	0.404	CCCACCTGTC
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	22	31	-	11.7308	8.95e-05	0.404	CCCACCTGTC
TCF3	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	40	49	+	11.7308	8.95e-05	0.404	CCCACCTGTC
TCF3	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	66	75	-	11.7308	8.95e-05	0.404	CCCACCTGTC
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	19	34	+	0.258621	8.95e-05	0.47	TAACCATAAAACACAA
CTCF	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	7	25	-	8.03279	8.95e-05	0.133	GGCCCTCGAGGGGGCCCGG
Mecom	FLIPPED__mrna.flip.antisense__chr17:73663226..73663340,+__2536.1.0.0	27	40	-	7.61798	8.95e-05	1	GATATAAGATTGCG
Mecom	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.1.0	75	88	+	7.61798	8.95e-05	1	GATATAAGATTGCG
Mecom	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.1	75	88	+	7.61798	8.95e-05	1	GATATAAGATTGCG
Mecom	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.0.0	75	88	+	7.61798	8.95e-05	1	GATATAAGATTGCG
Mecom	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.3.0	75	88	+	7.61798	8.95e-05	1	GATATAAGATTGCG
Mecom	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:73663226..73663340,-__1529.1.2.0	75	88	+	7.61798	8.95e-05	1	GATATAAGATTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	24	33	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	24	33	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.1.0	24	33	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	24	33	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.1.0	36	45	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	36	45	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	56	65	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.1.0	56	65	+	10.3276	8.95e-05	0.154	CGCACATGCG
NHLH1	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	50	59	-	10.3276	8.95e-05	0.154	CGCACATGCG
E2F6	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	9	19	+	10.3621	8.95e-05	0.084	GGGTGGGAACT
E2F6	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	45	55	+	10.3621	8.95e-05	0.084	GGGTGGGAACT
THAP1	FLIPPED__Lincrna.flip.antisense__chr11:82783068..82783182,-__2638.1.0.0	6	14	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	17	25	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	17	25	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	17	25	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	FLIPPED__Enhancer.flip.antisense__chr18:45688040..45688154,+__2548.1.0.0	20	28	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	31	39	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	31	39	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	42	50	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	42	50	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	42	50	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	42	50	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	FLIPPED__mrna.flip.antisense__chr9:72435677..72435791,-__2763.1.0.0	45	53	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	60	68	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	97	105	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	106	114	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.0	106	114	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.0.0	106	114	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.2.1	106	114	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:111880188..111880302,+__1546.1.1.0	106	114	+	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	1	9	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	10	18	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	22	30	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	22	30	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	22	30	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	22	30	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	22	30	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	47	55	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	62	70	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.0.0	62	70	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	65	73	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	65	73	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	73	81	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	73	81	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	73	81	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Enhancer.flip.sense__chr18:45688040..45688154,-__2068.1.0.0	87	95	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	89	97	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	90	98	-	9.85526	8.96e-05	0.215	CTGCCCGGC
THAP1	WILDTYPE__Lincrna.flip.sense__chr11:82783068..82783182,+__201.1.0.0	101	109	-	9.85526	8.96e-05	0.215	CTGCCCGGC
Stat6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	22	36	+	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	22	36	+	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Stat6	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	53	67	+	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	48	62	-	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Stat6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	48	62	-	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Stat6	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	79	93	-	10.2586	8.96e-05	0.834	CGTTTCCCCGGAAGC
Foxq1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.1.0	89	99	+	10.9694	8.96e-05	1	GACAGTTTATT
Foxq1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.0.0	89	99	+	10.9694	8.96e-05	1	GACAGTTTATT
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.1.0	44	58	+	9.68831	8.96e-05	1	TGTTATTAAGTAACG
HNF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.0.0	44	58	+	9.68831	8.96e-05	1	TGTTATTAAGTAACG
HNF1A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114645..145114759,+__1994.1.2.0	44	58	+	9.68831	8.96e-05	1	TGTTATTAAGTAACG
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	7	19	+	10.7143	8.96e-05	0.531	CTGAGGTCACACC
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	52	64	-	10.7143	8.96e-05	0.531	CTGAGGTCACACC
TBP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.1.0	50	64	+	10.7778	8.96e-05	0.717	GCATAAAAGAGGTGG
TBP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12305750..12305864,+__378.1.0.0	50	64	+	10.7778	8.96e-05	0.717	GCATAAAAGAGGTGG
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	70	83	-	-3.89091	8.96e-05	0.788	CTGAAAGTGAAGGT
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	14	27	-	10.1061	8.96e-05	0.0687	GCCGCCGCGTCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	58	71	+	10.1061	8.96e-05	0.0687	GTGGGCGCAGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	58	71	+	10.1061	8.96e-05	0.0687	GTGGGCGCAGCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	64	77	+	10.1061	8.96e-05	0.0687	GGCGCCCCGGCCCG
ZIC1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	47	60	+	5.46809	8.96e-05	0.106	ACCCCCCCACGGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	65	78	+	5.46809	8.96e-05	0.106	CCCGCCCCACTGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	65	78	+	5.46809	8.96e-05	0.106	CCCGCCCCACTGGG
ZIC1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	55	68	-	5.46809	8.96e-05	0.106	ACCCCCCCACGGTC
PKNOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.0.0	76	87	-	1.4898	8.96e-05	1	TGACATCTGAAA
PKNOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:80231443..80231557,+__1679.1.1.0	76	87	-	1.4898	8.96e-05	1	TGACATCTGAAA
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	17	30	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	17	30	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	17	30	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	17	30	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	17	30	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	9	22	-	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	9	22	-	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	9	22	-	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	9	22	-	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	93	106	+	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
KLF14	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	85	98	-	8.03448	8.96e-05	0.0409	AGCCCCGCCCCAAG
FOXC2	WILDTYPE__Enhancer.flip.sense__chr7:111724652..111724766,-__2208.1.0.0	7	18	+	10.9802	8.96e-05	1	TAAGAAAACAAG
FOXC2	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	26	37	-	10.9802	8.96e-05	1	TAAGAAAACAAG
FOXC2	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	78	89	+	10.9802	8.96e-05	1	TAAGAAAACAAG
FOXC2	FLIPPED__Enhancer.flip.antisense__chr7:111724652..111724766,+__2599.1.0.0	97	108	-	10.9802	8.96e-05	1	TAAGAAAACAAG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	22	36	-	8.7	8.96e-05	0.122	GGGGGGCGGAGAGTA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	43	57	+	8.7	8.96e-05	0.122	GGGGGGCGGAGAGTA
NR2C2	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	46	60	+	8.7	8.96e-05	0.122	CGAGCTCAGAGTCCG
NR2C2	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	55	69	-	8.7	8.96e-05	0.122	CGAGCTCAGAGTCCG
Ar	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	28	44	+	5.74138	8.96e-05	0.882	GGGAGCACGCCGTCCCA
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	28	44	+	5.74138	8.96e-05	0.882	CGGCACAGGCAGTGCCA
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	28	44	+	5.74138	8.96e-05	0.882	CGGCACAGGCAGTGCCA
Ar	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	71	87	-	5.74138	8.96e-05	0.882	GGGAGCACGCCGTCCCA
RFX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	14	29	+	8.62121	8.96e-05	0.427	TGTTGTCATACCAATG
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	79	94	+	8.62121	8.96e-05	0.427	CATAATCAAGGAAACC
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	79	94	+	8.62121	8.96e-05	0.427	CATAATCAAGGAAACC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	1	13	-	9.05172	8.96e-05	0.0578	TCCCCGGGCGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	1	13	-	9.05172	8.96e-05	0.0578	TCCCCGGGCGGGG
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	34	46	+	9.05172	8.96e-05	0.0578	GGCCTCTGCGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	31	43	-	9.05172	8.96e-05	0.0578	AGCCCGGCCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	31	43	-	9.05172	8.96e-05	0.0578	AGCCCGGCCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	31	43	-	9.05172	8.96e-05	0.0578	AGCCCGGCCGGCC
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	69	81	-	9.05172	8.96e-05	0.0578	GGCCTCTGCGGCA
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	70	83	-	10.7069	8.96e-05	0.369	ATTCCTGGAAATCC
Stat4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	70	83	-	10.7069	8.96e-05	0.369	ATTCCTGGAAATCC
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.1.0	70	83	-	10.7069	8.96e-05	0.369	ATTCCTGGAAATCC
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	70	83	-	10.7069	8.96e-05	0.369	ATTCCTGGAAATCC
Stat4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	70	83	-	10.7069	8.96e-05	0.369	ATTCCTGGAAATCC
Hes1	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	2	11	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	2	11	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	15	24	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	13	22	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	13	22	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	16	25	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	25	34	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	29	38	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	34	43	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	34	43	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	31	40	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	31	40	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	31	40	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	31	40	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Lincrna.noflip.NA__chrX:43036167..43036281,+__935.1.0.0	36	45	-	9.74126	8.96e-05	0.122	GCCACGCTCC
Hes1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	46	55	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	50	59	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	50	59	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	51	60	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	47	56	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr4:1242883..1242997,+__2507.1.0.0	47	56	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	59	68	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__mrna.flip.sense__chr4:1242883..1242997,-__1197.1.0.0	59	68	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	52	61	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	52	61	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	64	73	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	55	64	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	56	65	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	56	65	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	68	77	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	60	69	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	77	86	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	81	90	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	93	102	+	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	91	100	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
Hes1	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	104	113	-	9.74126	8.96e-05	0.122	CGCGCGCGCC
CREB3L1	FLIPPED__Antisense.flip.antisense__chr14:39736252..39736366,+__2363.1.0.0	25	38	+	7.83333	8.96e-05	0.357	CGGACACGTCTGCG
CREB3L1	WILDTYPE__Antisense.flip.sense__chr14:39736252..39736366,-__288.1.0.0	77	90	-	7.83333	8.96e-05	0.357	CGGACACGTCTGCG
XBP1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	39	52	-	9.13462	8.96e-05	0.529	ATTCAGACGTCACC
Dmbx1	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	65	81	+	10.8421	8.96e-05	1	ATTCAAGGATTAGGTAA
TBR1	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	54	63	-	10.5319	8.96e-05	0.97	AGGTGTTAGA
TBR1	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	101	110	-	10.5319	8.96e-05	0.97	AGGTGCGAGA
TBR1	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	14	+	10.5319	8.96e-05	0.97	AGGTGCGAGA
E2F7	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	18	31	-	-5.88525	8.96e-05	1	AGTTGCCGCCAACC
E2F7	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	84	97	+	-5.88525	8.96e-05	1	AGTTGCCGCCAACC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	12	24	+	9.62295	8.96e-05	0.0589	GGCCCCGGTGGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	55	65	-	10.6909	8.96e-05	0.078	CCCCTTCCGCG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	55	65	-	10.6909	8.96e-05	0.078	CCCCTTCCGCG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	-	11.1639	8.96e-05	0.342	AACACGTGCC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	-	11.1639	8.96e-05	0.342	AACACGTGCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	36	+	9.72727	8.96e-05	0.0416	CCACCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	36	+	9.72727	8.96e-05	0.0416	CCACCCCCCCCCCCCC
EGR4	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	9	24	-	9.72727	8.96e-05	0.0416	CTCGGCCCGCGCCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	26	41	+	9.72727	8.96e-05	0.0416	CCACCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	12	27	-	9.72727	8.96e-05	0.0416	CTCCGCACCCGCCTCG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	12	27	-	9.72727	8.96e-05	0.0416	CTCCGCACCCGCCTCG
EGR4	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	29	44	+	9.72727	8.96e-05	0.0416	GACTGCCCGCGCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	51	66	+	9.72727	8.96e-05	0.0416	CCCCGCCGCCGCGCCG
EGR4	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	54	69	+	9.72727	8.96e-05	0.0416	CTCGGCCCGCGCCCCT
EGR4	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	46	61	-	9.72727	8.96e-05	0.0416	CTCGGCCCGCGCCCCT
EGR4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	49	64	-	9.72727	8.96e-05	0.0416	CCCCGCCGCCGCGCCG
EGR4	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	91	106	+	9.72727	8.96e-05	0.0416	CTCGGCCCGCGCCCCT
E2F4	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	6	16	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.1.0	11	21	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:38004967..38005081,+__1604.1.0.0	11	21	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	14	24	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	21	31	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.0.0	21	31	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	27	37	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	27	37	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	34	44	+	10.1552	8.96e-05	0.0512	GGGCGAGAACG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	30	40	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	30	40	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	30	40	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	30	40	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.0.0	52	62	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.1.0	52	62	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.0	52	62	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	43	53	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	56	66	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	57	67	+	10.1552	8.96e-05	0.0512	CGGCGGGGGGT
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	57	67	+	10.1552	8.96e-05	0.0512	CGGCGGGGGGT
E2F4	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	57	67	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	48	58	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	48	58	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	48	58	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	62	72	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr1:213031405..213031519,+__2325.1.0.0	53	63	-	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	67	77	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	67	77	+	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.2.1	59	69	-	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:41196520..41196634,-__1538.1.1.0	59	69	-	10.1552	8.96e-05	0.0512	AGGCGGGGGAG
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	70	80	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	71	81	-	10.1552	8.96e-05	0.0512	GGGCGAGAACG
E2F4	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	78	88	-	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	102	112	+	10.1552	8.96e-05	0.0512	CGGCGGGGGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	27	40	+	9.65385	8.97e-05	0.0306	CCGACGCCGCCGGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	27	40	+	9.65385	8.97e-05	0.0306	CCGACGCCGCCGGG
EGR1	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	57	70	+	9.65385	8.97e-05	0.0306	ACGCCGCCCTCGTC
ESR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	58	72	+	10.2115	8.97e-05	0.488	AGGGCACGTTGAGCG
ESR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	58	72	+	10.2115	8.97e-05	0.488	AGGGCACGTTGAGCG
Foxo1	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	58	68	+	11.1034	8.97e-05	0.902	CCCTGTTTCCT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	47	57	-	11.1034	8.97e-05	0.902	CCCTGTTTCCT
ZBTB7A	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	56	67	-	10.3429	8.97e-05	0.226	CCCGCCCACTGA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.1.0	45	56	+	10.3429	8.97e-05	0.226	GAGGCCCACCTA
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4475789..4475903,+__1508.1.0.0	45	56	+	10.3429	8.97e-05	0.226	GAGGCCCACCTA
ZBTB7A	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	48	59	+	10.3429	8.97e-05	0.226	CCCGCCCACTGA
Nr5a2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	77	91	-	9.55172	8.97e-05	0.506	CGCTTCCAGGTCAGG
Nr5a2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	77	91	-	9.55172	8.97e-05	0.506	CGCTTCCAGGTCAGG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	14	24	-	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	14	24	-	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	30	40	+	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	30	40	+	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	76	86	-	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	86	96	-	9.81818	8.97e-05	0.253	AATGACTAATC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	86	96	-	9.81818	8.97e-05	0.253	AATGACTAATC
ATF4	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	26	38	-	9.01639	8.97e-05	0.744	GTCTGTTGCAAGA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	90	102	+	9.01639	8.97e-05	0.744	GTCTGTTGCAAGA
EBF1	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	63	76	+	8.39344	8.97e-05	0.367	AATCCCCGGCGAAA
KLF16	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	6	16	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	7	17	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	20	30	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	21	31	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	19	29	-	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	19	29	-	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	29	39	+	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	38	48	+	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	31	41	-	9.96552	8.97e-05	0.0259	TACCCGCCCAT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	31	41	-	9.96552	8.97e-05	0.0259	TACCCGCCCAT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	32	42	-	9.96552	8.97e-05	0.0259	GGCACCCCCAC
KLF16	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	47	57	-	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	58	68	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	56	66	-	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	77	87	+	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	77	87	+	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	76	86	-	9.96552	8.97e-05	0.0259	GCCCGGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	94	104	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	94	104	+	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	98	108	-	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	99	109	-	9.96552	8.97e-05	0.0259	CCCCTGCCCCC
IRF1	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	1	21	-	8.24194	8.97e-05	0.19	CTCGGCTCTCTCTCTCTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:28975032..28975146,+__64.1.0.0	69	89	-	8.24194	8.97e-05	0.19	AGCCCTTTTTGCTTTCTCTGT
MTF1	WILDTYPE__mrna.flip.sense__chr19:59084843..59084957,-__1051.1.0.0	7	20	-	5.47561	8.97e-05	0.523	TGCGCGCGCGGCGC
MTF1	FLIPPED__mrna.flip.antisense__chr19:59084843..59084957,+__2458.1.0.0	95	108	+	5.47561	8.97e-05	0.523	TGCGCGCGCGGCGC
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	68	78	+	11.0408	8.97e-05	0.188	GGCAGGTGACG
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	68	78	+	11.0408	8.97e-05	0.188	GGCAGGTGACG
Myog	WILDTYPE__Antisense.noflip.NA__chr5:131762332..131762446,-__659.1.0.0	99	109	+	11.0408	8.97e-05	0.188	GCCAGCTGCAG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	7	21	-	9.68182	8.97e-05	0.126	CTCTCGTGGGGCGGG
PRDM1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	58	72	+	9.8	8.97e-05	0.345	GGAAGGAGAGAGGAA
ELF3	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	44	56	+	7.48276	8.97e-05	0.189	GATCCGGAAGAGA
ZIC3	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	38	52	+	7.35714	8.97e-05	0.123	CCTCCCCTCCGGCGC
ZIC3	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	40	54	-	7.35714	8.97e-05	0.123	CCTCCCCTCCGGCGC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	61	75	+	7.35714	8.97e-05	0.123	CCTCCCCTCCGGCGC
ZIC3	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	63	77	-	7.35714	8.97e-05	0.123	CCTCCCCTCCGGCGC
LHX2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	11.0444	8.97e-05	1	GCCAATTACC
LHX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	11.0444	8.97e-05	1	GCCAATTACC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	-	9.14754	8.98e-05	0.065	CGCCCGCCCGGCT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	2	22	-	9.06122	8.98e-05	0.0229	CGGGGAGGGGCGGGGAGGCGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	2	22	-	9.06122	8.98e-05	0.0229	CGGGGAGGGGCGGGGAGGCGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	2	22	-	9.06122	8.98e-05	0.0229	GAGGGAAGAAAAGCTGGATGT
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	2	22	-	9.06122	8.98e-05	0.0229	GAGGGAAGAAAAGCTGGATGT
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	7	27	-	9.06122	8.98e-05	0.0229	GGAGGGATGGGAGGGGTAGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr5:40410478..40410592,+__1969.1.0.0	10	30	-	9.06122	8.98e-05	0.0229	TGAGAAGGATGCAGGGGGAAT
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	24	44	-	9.06122	8.98e-05	0.0229	GAAGGCTGAGAGAAAGGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.2.0	24	44	-	9.06122	8.98e-05	0.0229	GAAGGCTGAGAGAAAGGGCAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	24	44	-	9.06122	8.98e-05	0.0229	GAAGGCTGAGAGAAAGGGCAG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	31	51	-	9.06122	8.98e-05	0.0229	AGGGCCCGAGGGTGGGAGGGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	43	63	-	9.06122	8.98e-05	0.0229	AGGAGAGAAAAAAGGGAGAGG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	47	67	-	9.06122	8.98e-05	0.0229	CGAGAAGGGAAGTGGAGAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	47	67	-	9.06122	8.98e-05	0.0229	CGAGAAGGGAAGTGGAGAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	47	67	-	9.06122	8.98e-05	0.0229	CGAGAAGGGAAGTGGAGAAGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	47	67	-	9.06122	8.98e-05	0.0229	CGAGAAGGGAAGTGGAGAAGC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	86	106	-	9.06122	8.98e-05	0.0229	GAGACAGAGAAGGGAGAGAGA
ZNF263	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	24	44	+	9.06122	8.98e-05	0.0229	GGTGAGGGGAGGAGGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098668..90098782,+__1439.1.0.0	41	61	+	9.06122	8.98e-05	0.0229	AGAGAAGTAGGAGGAAGGCGC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:90098628..90098742,+__1438.1.0.0	81	101	+	9.06122	8.98e-05	0.0229	AGAGAAGTAGGAGGAAGGCGC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	88	108	+	9.06122	8.98e-05	0.0229	GGATGACGAGTGGCTGGATAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	91	111	+	9.06122	8.98e-05	0.0229	GGAAGCAGGCAGGAGAGGGGG
HINFP	WILDTYPE__Lincrna.noflip.NA__chr7:28997850..28997964,-__802.1.0.0	30	41	-	10.1212	8.98e-05	0.11	CCGGGTGCGCGT
ERG	WILDTYPE__Lincrna.noflip.NA__chr20:58713468..58713582,+__487.1.0.0	21	30	-	11	8.98e-05	0.15	ACCGGAAGAG
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	28	37	-	11	8.98e-05	0.15	ACCGGAAGAG
ERG	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	11	8.98e-05	0.15	GCCGGAAACA
ERG	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	11	8.98e-05	0.15	GCCGGAAACA
ERG	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	11	8.98e-05	0.15	GCCGGAAACA
ERG	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	11	8.98e-05	0.15	GCCGGAAACA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	35	49	-	10.493	8.98e-05	0.385	GAAAAGAAAAAAAAT
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	14	29	-	-3.4898	8.98e-05	0.877	GAGGCCAAGCGGGCAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	19	36	+	-15.9474	8.98e-05	0.0552	AAAGGAAGGGAGGGAAAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr6:56911262..56911376,+__1304.1.0.0	78	95	+	-15.9474	8.98e-05	0.0552	GGAATGAGAGAAAGAGGC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	86	103	+	-15.9474	8.98e-05	0.0552	AAAGGAAGGGAGGGAAAG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	12	29	-	-15.9474	8.98e-05	0.0552	AAAGGAAGGGAGGGAAAG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	79	96	-	-15.9474	8.98e-05	0.0552	AAAGGAAGGGAGGGAAAG
Bach1::Mafk	WILDTYPE__mrna.noflip.NA__chr6:168227511..168227625,+__1291.1.0.0	95	109	+	6.46053	8.98e-05	0.29	GGGCTGAGGCGGCGC
EVX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	10.1509	8.98e-05	1	GCCAATTACC
EVX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	10.1509	8.98e-05	1	GCCAATTACC
EVX1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	89	98	-	10.1509	8.98e-05	1	GGTGATTACG
FOXB1	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	58	68	-	10.6923	8.98e-05	1	TATGCAAATAA
FOXB1	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	59	69	-	10.6923	8.98e-05	1	TATGCAAATAA
FOXB1	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	47	57	+	10.6923	8.98e-05	1	TATGCAAATAA
SP8	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	15	26	-	10.3421	8.98e-05	0.0389	GCTCCACCCCCT
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	15	26	-	10.3421	8.98e-05	0.0389	GCTCCACCCCCT
SP8	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	91	102	-	10.3421	8.98e-05	0.0389	CCCACTGCCCCT
SP8	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	13	24	+	10.3421	8.98e-05	0.0389	CCCACTGCCCCT
STAT1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	3	13	-	9.76364	8.98e-05	0.424	GCTCCGGGAAG
STAT1	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	30	40	+	9.76364	8.98e-05	0.424	GCTCCGGGAAG
STAT1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	44	54	+	9.76364	8.98e-05	0.424	GCTCCGGGAAG
TFEC	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	29	38	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	30	39	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	34	43	-	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	70	79	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	70	79	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	97	106	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	97	106	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	97	106	+	11.1341	8.98e-05	0.199	AGCATGTGAC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	97	106	+	11.1341	8.98e-05	0.199	AGCATGTGAC
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	5	15	+	9.30909	8.98e-05	0.0243	GACCCGGCGCA
NRF1	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	6	16	-	9.30909	8.98e-05	0.0243	GCGTGTGCCCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.1.0	79	89	-	9.30909	8.98e-05	0.0243	CAGCCGGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.1	79	89	-	9.30909	8.98e-05	0.0243	CAGCCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	95	105	-	9.30909	8.98e-05	0.0243	CAGCCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	95	105	-	9.30909	8.98e-05	0.0243	CAGCCGGCGCC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	91	100	+	10.8889	8.99e-05	0.182	CGAGGGGAGA
HEY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	9	18	+	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	9	18	+	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	24	33	-	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	47	56	+	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	59	68	-	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	59	68	-	10.4483	8.99e-05	0.222	GTGACGTGCC
HEY2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	94	103	-	10.4483	8.99e-05	0.222	GGCACGTTCC
HEY2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	97	106	-	10.4483	8.99e-05	0.222	GTGACGTGCC
PKNOX2	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	51	62	-	2.01639	8.99e-05	0.683	ACACAGCTGTCT
EHF	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	25	36	+	9.60656	8.99e-05	0.145	ATCCCGGAAACG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	90	-	9.60656	8.99e-05	0.145	ATCCCGGAAACG
EHF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	90	-	9.60656	8.99e-05	0.145	ATCCCGGAAACG
EHF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	90	-	9.60656	8.99e-05	0.145	ATCCCGGAAACG
EHF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	90	-	9.60656	8.99e-05	0.145	ATCCCGGAAACG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	41	57	-	9.15306	8.99e-05	0.405	AGGGGAGGGCGCGGGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	41	57	-	9.15306	8.99e-05	0.405	AGGGGAGGGCGCGGGCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.0.0	22	38	-	2.74545	8.99e-05	0.0345	GCTACCCCTCCCCCCAG
SP4	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	47	63	+	2.74545	8.99e-05	0.0345	GCCGCCCCTCCCTCCTT
SP4	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	52	68	-	2.74545	8.99e-05	0.0345	GCCGCCCCTCCCTCCTT
SP4	FLIPPED__Antisense.flip.antisense__chr2:160471774..160471888,-__2664.1.0.0	77	93	+	2.74545	8.99e-05	0.0345	GCTACCCCTCCCCCCAG
HOXA13	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	45	54	-	11.0139	8.99e-05	1	CTTATAAAAC
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	48	57	-	11.0139	8.99e-05	1	CTTATAAAAC
HOXA13	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	49	58	-	11.0139	8.99e-05	1	CTTATAAAAC
HOXA13	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	50	59	-	11.0139	8.99e-05	1	CTTATAAAAC
HOXA13	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	61	70	+	11.0139	8.99e-05	1	CTTATAAAAC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	50	61	-	5.83636	8.99e-05	1	GCTTTAAATAAA
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	50	61	-	5.83636	8.99e-05	1	GCTTTAAATAAA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	21	-	11.1207	8.99e-05	0.13	AACGGAAATA
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	21	-	11.1207	8.99e-05	0.13	AACGGAAATA
ETV4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	50	59	+	11.1207	8.99e-05	0.13	AACGGAAATA
ETV4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	50	59	+	11.1207	8.99e-05	0.13	AACGGAAATA
ETV4	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	56	65	+	11.1207	8.99e-05	0.13	AACGGATGTG
ETV4	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	50	59	-	11.1207	8.99e-05	0.13	AACGGATGTG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	6	19	-	7.40984	8.99e-05	0.189	CCCCCCCCCCAGCC
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	6	19	-	7.40984	8.99e-05	0.189	CCCCCCCCCCAGCC
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	78	89	-	10.4426	8.99e-05	0.452	TTGGGCGCCTGG
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	78	89	-	10.4426	8.99e-05	0.452	TTGGGCGCCTGG
Foxq1	FLIPPED__Antisense.flip.antisense__chr1:151584446..151584560,-__2615.1.0.0	98	108	+	10.9592	8.99e-05	1	TGTAGTTTATG
Foxq1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.1.0	7	17	-	10.9592	8.99e-05	1	TGTAGTTTATG
Foxq1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:151584446..151584560,+__20.1.0.0	7	17	-	10.9592	8.99e-05	1	TGTAGTTTATG
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	13	22	+	11.3878	8.99e-05	0.422	CGCAGCTGGG
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	13	22	+	11.3878	8.99e-05	0.422	CGCAGCTGGG
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	9	24	+	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	9	24	+	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
GLIS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	9	24	+	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	9	24	+	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
GLIS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	9	24	+	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	26	41	-	-10.9423	8.99e-05	0.329	CCACGCCTCACGCCGC
GLIS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	26	41	-	-10.9423	8.99e-05	0.329	CCACGCCTCACGCCGC
GLIS1	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	74	89	+	-10.9423	8.99e-05	0.329	CCACGCCTCACGCCGC
GLIS1	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	91	106	-	-10.9423	8.99e-05	0.329	CCGCCCCCGACGCAGA
ETS1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	27	36	+	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	43	52	+	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	82	91	+	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	82	91	+	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	22	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	33	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	47	56	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	47	56	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	47	56	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	47	56	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	63	72	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	88	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	88	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	88	-	10.9138	8.99e-05	0.12	CCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	88	-	10.9138	8.99e-05	0.12	CCCGGAAACG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	5	15	-	10.75	8.99e-05	0.0758	TGCCTGGAGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	63	73	-	10.75	8.99e-05	0.0758	AGCTCGAGGCG
ESRRB	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	33	43	+	7.72414	8.99e-05	1	TCAAGGTCTCA
PROX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	40	51	-	8.03636	8.99e-05	1	CAAGCCTCCTTC
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	40	51	-	8.03636	8.99e-05	1	CAAGCCTCCTTC
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	40	51	-	8.03636	8.99e-05	1	CAAGCCTCCTTC
PROX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	40	51	-	8.03636	8.99e-05	1	CAAGCCTCCTTC
PROX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	40	51	-	8.03636	8.99e-05	1	CAAGCCTCCTTC
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	+	7.90909	8.99e-05	0.277	TGTGACGTAAGC
Creb5	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	+	7.90909	8.99e-05	0.277	TGTGACGTAAGC
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	15	31	-	2.2459	8.99e-05	0.563	AGGTAGTGGGAAGGTCT
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	15	31	-	2.2459	8.99e-05	0.563	AGGTAGTGGGAAGGTCT
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	15	31	-	2.2459	8.99e-05	0.563	AGGTAGTGGGAAGGTCT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	2	21	-	2.77064	9e-05	0.0742	CCACCCCAAACCACAAGTAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	92	111	+	2.77064	9e-05	0.0742	CCACCCCAAACCACAAGTAC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	1	12	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	12	23	-	10.7742	9e-05	0.281	CCGCCCACCAGC
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	31	42	+	10.7742	9e-05	0.281	CCGCCCACCAGC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	23	34	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	23	34	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	23	34	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	45	56	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	45	56	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	45	56	-	10.7742	9e-05	0.281	GCCCCCACCGCT
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	73	84	-	10.7742	9e-05	0.281	CCGCCCACCAGC
ZBTB7C	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	92	103	+	10.7742	9e-05	0.281	CCGCCCACCAGC
SPI1	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	12	25	-	1.76364	9e-05	0.266	CAGATGAGGAAGCT
SPI1	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	90	103	+	1.76364	9e-05	0.266	CAGATGAGGAAGCT
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.1.0	23	37	+	9.75862	9e-05	0.0184	TCCCCGCTTTCTCCG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	23	37	+	9.75862	9e-05	0.0184	TCCCCGCTTTCTCCG
SP2	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	13	27	-	9.75862	9e-05	0.0184	CTCCCTCTCCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	29	43	+	9.75862	9e-05	0.0184	CTCCCGCCCTGGGAG
SP2	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	35	49	+	9.75862	9e-05	0.0184	GCGCCGCCCCCGCGG
Barhl1	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	98	107	-	9.41509	9e-05	1	CCTAATTGCA
NFKB1	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	48	60	-	1.06122	9e-05	0.263	CGGGGCTTCCTCG
EGR3	WILDTYPE__mrna.flip.sense__chr3:52273091..52273205,-__1194.1.0.0	4	18	-	5.46552	9e-05	0.0418	CCCCGCCCCCGACAG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	24	38	+	5.46552	9e-05	0.0418	CCCCACCCCCCCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	18	32	-	5.46552	9e-05	0.0418	CCCCGCCTCCTCTTC
EGR3	FLIPPED__mrna.flip.antisense__chr3:52273091..52273205,+__2505.1.0.0	97	111	+	5.46552	9e-05	0.0418	CCCCGCCCCCGACAG
Gabpa	WILDTYPE__mrna.noflip.NA__chr2:46844112..46844226,-__1279.1.0.0	93	103	-	10.3115	9e-05	0.0793	GCGGAAGGGAA
MAX::MYC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	29	39	+	9.7449	9e-05	0.377	TGCCACGTGAC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	29	39	+	9.7449	9e-05	0.377	TGCCACGTGAC
Mitf	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	34	43	+	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	59	68	+	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	70	79	-	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	72	81	-	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	72	81	-	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	72	81	-	10.4898	9e-05	0.283	AGGCACGTGG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	72	81	-	10.4898	9e-05	0.283	AGGCACGTGG
E2F4	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	68	78	-	10.1379	9e-05	0.0514	AAGCGGGAACT
Foxa2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	13	24	+	10.77	9e-05	1	TATTGGCTTAGG
ESR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.1.0	77	93	+	-1.48485	9e-05	0.514	AATGTCATAGCGACTTT
ESR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:46667702..46667816,+__365.1.0.0	77	93	+	-1.48485	9e-05	0.514	AATGTCATAGCGACTTT
ESR1	FLIPPED__Antisense.flip.antisense__chr17:46667702..46667816,-__2656.1.0.0	22	38	-	-1.48485	9e-05	0.514	AATGTCATAGCGACTTT
GCM2	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	39	48	+	10.7541	9e-05	0.726	CATGCTGGTA
POU6F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	45	54	+	10.9818	9e-05	1	CACTCATTAA
POU6F2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	45	54	+	10.9818	9e-05	1	CACTCATTAA
POU6F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	45	54	+	10.9818	9e-05	1	CACTCATTAA
POU6F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	45	54	+	10.9818	9e-05	1	CACTCATTAA
POU6F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	100	109	-	10.9818	9e-05	1	CACTCATTAA
POU6F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	100	109	-	10.9818	9e-05	1	CACTCATTAA
SPIC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	45	58	-	10.3803	9e-05	0.306	ACCAAAAGGAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	45	58	-	10.3803	9e-05	0.306	ACCAAAAGGAAGAA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	37	51	+	10.3964	9e-05	0.19	GTGAGTGAGGGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	37	51	+	10.3964	9e-05	0.19	GTGAGTGAGGGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	37	51	+	10.3964	9e-05	0.19	GTGAGTGAGGGGCCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	37	51	+	10.3964	9e-05	0.19	GTGAGTGAGGGGCCA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	16	30	-	10.3964	9e-05	0.19	GAGGGGGAGGGGGCG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	60	74	-	10.3964	9e-05	0.19	GAGGGGGAGGGGGCG
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	65	79	-	10.3964	9e-05	0.19	GTGGTGGAGAGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	65	79	-	10.3964	9e-05	0.19	GTGGTGGAGAGGGCC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	20	32	-	11.0408	9e-05	0.202	TTCAGCTGCGCGC
MTF1	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	30	43	-	5.46341	9e-05	0.523	TTCGCGCACGCTCC
MTF1	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	72	85	+	5.46341	9e-05	0.523	TTCGCGCACGCTCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr19:56989446..56989560,+__387.1.0.0	77	89	-	10.2131	9e-05	0.359	CAGTCTCACTGCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	86	98	-	10.2131	9e-05	0.359	GTGCCTGGCACAA
BHLHE40	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	11	20	+	10.25	9e-05	0.306	CTCACGTGTT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	95	104	-	10.25	9e-05	0.306	CTCACGTGTT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	95	104	-	10.25	9e-05	0.306	CTCACGTGTT
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	95	104	-	10.25	9e-05	0.306	CTCACGTGTT
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	95	104	-	10.25	9e-05	0.306	CTCACGTGTT
CEBPG	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	4	13	+	9.93878	9e-05	0.889	CTGACGCAAT
CEBPG	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	61	70	-	9.93878	9e-05	0.889	CTGACGCAAT
TCF3	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	5	14	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.1.0	10	19	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.0.0	10	19	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.1	10	19	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:143808383..143808497,-__841.1.2.0	10	19	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE__mrna.noflip.NA__chr22:30970575..30970689,-__1067.1.0.0	49	58	+	11.6923	9e-05	0.404	GGCACCTGGC
TCF3	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	101	110	-	11.6923	9e-05	0.404	GGCACCTGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	28	40	-	9.03448	9e-05	0.0578	GGCCGGTGGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	28	40	-	9.03448	9e-05	0.0578	GGCCGGTGGGGCG
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.1	29	37	-	10.8837	9e-05	0.551	ATCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.2.0	29	37	-	10.8837	9e-05	0.551	ATCAGGTGT
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.1.0	29	37	-	10.8837	9e-05	0.551	ATCAGGTGT
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:6795793..6795907,-__1699.1.0.0	29	37	-	10.8837	9e-05	0.551	ATCAGGTGT
SPDEF	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	44	54	+	9.61818	9e-05	0.269	GCCCGGAAGTT
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr1:142618724..142618838,+__13.1.0.0	61	71	+	9.61818	9e-05	0.269	ATCCGGAAGTG
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	74	84	+	9.61818	9e-05	0.269	ATCCGGAAGTG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	71	-	9.61818	9e-05	0.269	GCCCGGAAGTT
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	71	-	9.61818	9e-05	0.269	GCCCGGAAGTT
Tcf12	FLIPPED__Antisense.flip.antisense__chr15:91478353..91478467,+__2370.1.0.0	16	26	-	10.898	9e-05	0.206	CGCAGGTGCAG
Tcf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	91	+	10.898	9e-05	0.206	AGCAGGTGGTA
Tcf12	WILDTYPE__Antisense.flip.sense__chr15:91478353..91478467,-__339.1.0.0	89	99	+	10.898	9e-05	0.206	CGCAGGTGCAG
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	56	69	-	6.22472	9e-05	1	AAAATCGAGGTCAT
RORA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	56	69	-	6.22472	9e-05	1	AAAATCGAGGTCAT
Tcf7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	49	60	-	8.6129	9e-05	1	GAAGTTAAAAGG
Tcf7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	49	60	-	8.6129	9e-05	1	GAAGTTAAAAGG
SP3	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	77	87	+	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	FLIPPED__Antisense.flip.antisense__chr1:114355154..114355268,-__2613.1.0.0	89	99	+	10.6179	9e-05	0.0276	TCCACTCCTCC
SP3	WILDTYPE__Antisense.flip.sense__chr1:114355154..114355268,+__7.1.0.0	16	26	-	10.6179	9e-05	0.0276	TCCACTCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	24	34	-	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	24	34	-	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	24	34	-	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	24	34	-	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	28	38	-	10.6179	9e-05	0.0276	CCCACCCCTCC
SP3	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	53	63	-	10.6179	9e-05	0.0276	CCCACCCCTCC
MAF::NFE2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.1.0	61	75	+	7.88525	9.01e-05	0.53	CTGACATAGCACTCT
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:77425899..77426013,+__304.1.0.0	61	75	+	7.88525	9.01e-05	0.53	CTGACATAGCACTCT
ETV3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	10.7324	9.01e-05	0.176	ACAGGAAGTC
ETV3	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	10.7324	9.01e-05	0.176	ACAGGAAGTC
USF1	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	56	+	10.4082	9.01e-05	0.237	CTCACGTGGCA
ATF7	WILDTYPE__Antisense.noflip.NA__chr1:173833547..173833661,-__32.1.0.0	82	95	+	6.7	9.01e-05	0.244	CAATGATGTAATGA
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	57	68	-	9.89655	9.01e-05	0.365	ACTACCACCGTG
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	57	68	-	9.89655	9.01e-05	0.365	ACTACCACCGTG
OTX2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	3	10	+	11.2766	9.01e-05	1	CTAATCCT
OTX2	FLIPPED__Antisense.flip.antisense__chr5:52405635..52405749,-__2706.1.0.0	4	11	+	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.8.0	16	23	+	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.1	16	23	+	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	70	77	-	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.0.0	104	111	-	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:52405635..52405749,+__699.1.1.0	104	111	-	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	105	112	-	11.2766	9.01e-05	1	CTAATCCT
OTX2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	105	112	-	11.2766	9.01e-05	1	CTAATCCT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	78	92	+	8.90909	9.01e-05	0.355	TTGCTCTCGTTTTCT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	78	92	+	8.90909	9.01e-05	0.355	TTGCTCTCGTTTTCT
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	49	58	-	10.9636	9.01e-05	0.135	GGCGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	49	58	-	10.9636	9.01e-05	0.135	GGCGGAAGCA
ETV5	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	65	74	-	10.9636	9.01e-05	0.135	GGCGGAAGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.0.0	99	109	-	10.4	9.01e-05	0.0718	TGCCCCAAGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:6745090..6745204,-__1367.1.1.0	99	109	-	10.4	9.01e-05	0.0718	TGCCCCAAGCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	11	21	+	9.94828	9.01e-05	0.026	CCTACTCCCCC
MAFG	WILDTYPE__Antisense.noflip.NA__chr15:60771326..60771440,+__326.1.0.0	8	28	-	9.22449	9.01e-05	1	ATGTCGCTGAGACGTCATCAC
HES7	WILDTYPE__mrna.noflip.NA__chr19:52391169..52391283,-__1050.1.0.0	16	27	-	2.25862	9.01e-05	0.218	CGGCACCAGCCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.0.0	5	19	-	8.68571	9.01e-05	0.122	AGGGGAGGGAGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:220325375..220325489,+__1360.1.1.0	5	19	-	8.68571	9.01e-05	0.122	AGGGGAGGGAGGGCG
NR2C2	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	35	49	+	8.68571	9.01e-05	0.122	TGGGGGGGAAGGGGG
NR2C2	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	66	80	-	8.68571	9.01e-05	0.122	TGGGGGGGAAGGGGG
Myog	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	7	17	+	11.0204	9.01e-05	0.188	AGCAGCTGTCT
RXRG	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	14	27	+	0.638298	9.01e-05	0.509	CTGGTCAGGGGTCG
RXRG	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	88	101	-	0.638298	9.01e-05	0.509	CTGGTCAGGGGTCG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	16	29	-	10.0909	9.01e-05	0.0687	TGAGCCGGAGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	30	43	+	10.0909	9.01e-05	0.0687	CGCGCCGCGGCTTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	18	31	-	10.0909	9.01e-05	0.0687	GGGAGAGCGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	84	97	+	10.0909	9.01e-05	0.0687	GGGAGAGCGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	84	97	+	10.0909	9.01e-05	0.0687	GGGAGAGCGGCCTG
Zfx	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	72	85	-	10.0909	9.01e-05	0.0687	CGCGCCGCGGCTTG
Zfx	WILDTYPE__mrna.noflip.NA__chr2:54342721..54342835,+__1060.1.0.0	98	111	-	10.0909	9.01e-05	0.0687	GGCGGCGAGCCCTC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	7	16	-	9.73427	9.01e-05	0.122	GGCACGTGGG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	26	35	+	9.73427	9.01e-05	0.122	GGCACGTGGG
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	26	35	+	9.73427	9.01e-05	0.122	GGCACGTGGG
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	44	53	-	9.73427	9.01e-05	0.122	GGCACGTGGG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	44	53	-	9.73427	9.01e-05	0.122	GGCACGTGGG
SOX4	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	48	63	-	-14.303	9.01e-05	1	CAGCTTTTCCGGTGTT
RUNX3	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	91	100	-	10.9231	9.01e-05	0.508	CGACCACAAC
RUNX3	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	15	24	+	10.9231	9.01e-05	0.508	CGACCACAAC
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	66	83	+	-15.9605	9.01e-05	0.0552	GGGAGGGAAGAAACAGAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	81	98	-	-15.9605	9.01e-05	0.0552	GAAGGAACGGACGGAAAC
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.1	6	24	+	8.01639	9.01e-05	0.133	GGGCTAGGAGGTGGAGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.2.0	6	24	+	8.01639	9.01e-05	0.133	GGGCTAGGAGGTGGAGCCG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.1.0	6	24	+	8.01639	9.01e-05	0.133	GGGCTAGGAGGTGGAGCCG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:58042063..58042177,-__1526.1.0.0	6	24	+	8.01639	9.01e-05	0.133	GGGCTAGGAGGTGGAGCCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	19	32	-	8.01724	9.01e-05	0.041	AGAGCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	30	43	-	8.01724	9.01e-05	0.041	GGGCCCGCCTCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	30	43	-	8.01724	9.01e-05	0.041	GGGCCCGCCTCTTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	72	85	-	8.01724	9.01e-05	0.041	GGGCCCGCCTCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	72	85	-	8.01724	9.01e-05	0.041	GGGCCCGCCTCTTC
Stat5a::Stat5b	WILDTYPE__mrna.noflip.NA__chr2:145277651..145277765,-__1235.1.0.0	54	64	+	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	62	72	+	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	13	23	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	13	23	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	13	23	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	13	23	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	13	23	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	43	53	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Stat5a::Stat5b	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	76	86	-	10.9184	9.01e-05	0.4	GTTTCCTGGAG
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	31	44	+	9.48276	9.02e-05	0.324	GTCACCCAGAAAAC
Rfx1	WILDTYPE__Enhancer.noflip.NA__chr10:30831506..30831620,-__2138.1.0.0	47	60	-	9.48276	9.02e-05	0.324	CCCTCTCTGGCAAC
SREBF2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	7	16	-	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231986..2232100,+__1740.1.0.0	41	50	-	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.1.0	56	65	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143761835..143761949,+__1687.1.0.0	56	65	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	49	58	-	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	49	58	-	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	64	73	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	64	73	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	64	73	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:2231992..2232106,-__2033.1.0.0	71	80	+	8.98182	9.02e-05	0.266	GTCACCTGAG
SP3	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	84	+	10.6098	9.02e-05	0.0276	AGCCCGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	31	41	-	10.6098	9.02e-05	0.0276	AGCCCGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	31	41	-	10.6098	9.02e-05	0.0276	AGCCCGCCCAC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	22	35	+	5.44681	9.02e-05	0.106	GCCCTCCCGTCGTC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	22	35	+	5.44681	9.02e-05	0.106	GCCCTCCCGTCGTC
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr20:48887282..48887396,+__1791.1.0.0	74	87	+	5.44681	9.02e-05	0.106	GCCACCCTGTGGCC
JUN	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	5	17	+	9.4898	9.02e-05	0.343	GAAGTGAGGTAAG
JUN	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	39	51	-	9.4898	9.02e-05	0.343	GAAGTGAGGTAAG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	100	112	-	9.13115	9.02e-05	0.065	TGCCTCTCCGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	100	112	-	9.13115	9.02e-05	0.065	TGCCTCTCCGGGA
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	33	47	+	7.34286	9.02e-05	0.123	CCCCCCCCCCCGCAC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	54	68	-	7.34286	9.02e-05	0.123	GCCTTCCCGCCGTTA
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	54	68	-	7.34286	9.02e-05	0.123	GCCTTCCCGCCGTTA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.0.0	37	47	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192712..135192826,+__1443.1.1.0	37	47	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	54	64	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	54	64	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
TFAP2A	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	83	-	10.8727	9.02e-05	0.0559	CCCCGCCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	99	-	10.8727	9.02e-05	0.0559	CCCCGCCGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	99	-	10.8727	9.02e-05	0.0559	CCCCGCCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	101	111	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	101	111	-	10.8727	9.02e-05	0.0559	GGCCGGAGGCG
RFX3	FLIPPED__Antisense.flip.antisense__chr2:122407144..122407258,-__2663.1.0.0	54	69	+	8.60606	9.02e-05	0.427	CGTTACCATAGAGAGG
RFX3	WILDTYPE__Antisense.flip.sense__chr2:122407144..122407258,+__394.1.0.0	46	61	-	8.60606	9.02e-05	0.427	CGTTACCATAGAGAGG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	79	94	+	9.30303	9.02e-05	0.4	CATAATCAAGGAAACC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	79	94	+	9.30303	9.02e-05	0.4	CATAATCAAGGAAACC
RFX4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	79	94	-	9.30303	9.02e-05	0.4	GGTTTCCTTGATTATG
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	79	94	-	9.30303	9.02e-05	0.4	GGTTTCCTTGATTATG
ETV2	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	8	18	-	9.72131	9.02e-05	0.187	CACAGGAAACT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	82	92	-	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	82	92	-	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	82	92	-	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	82	92	-	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	82	92	-	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	14	24	+	10.8723	9.02e-05	0.279	CATGAGTCATC
FOS	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	14	24	+	10.8723	9.02e-05	0.279	CATGAGTCATC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	14	+	10.8	9.02e-05	0.0579	AGCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	10	21	-	10.8	9.02e-05	0.0579	CCCCCCCGGGGC
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	12	23	-	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	13	24	-	10.8	9.02e-05	0.0579	CCCCCCCGGGGC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	39	50	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	39	50	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	39	50	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	52	63	-	10.8	9.02e-05	0.0579	GCCCCCCCGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	52	63	-	10.8	9.02e-05	0.0579	GCCCCCCCGGCA
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	69	80	+	10.8	9.02e-05	0.0579	CGGCCGGAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	69	80	+	10.8	9.02e-05	0.0579	CGGCCGGAGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	92	103	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	92	103	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	92	103	+	10.8	9.02e-05	0.0579	CACCCCGGGCCG
Klf12	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	23	37	-	7.47541	9.02e-05	0.0731	GCCCCCACCCACATC
Klf12	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	78	92	+	7.47541	9.02e-05	0.0731	GCCCCCACCCACATC
Spz1	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	57	67	-	10.8091	9.02e-05	0.797	AGGGTAGGACC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	14	27	-	-3.92727	9.02e-05	0.788	TAGGAACTGAAACC
IRF8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	43	56	-	-3.92727	9.02e-05	0.788	GGGATACCGAACCC
IRF8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	43	56	-	-3.92727	9.02e-05	0.788	GGGATACCGAACCC
IRF8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	85	98	+	-3.92727	9.02e-05	0.788	TAGGAACTGAAACC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.1.0	5	25	-	8.22581	9.02e-05	0.19	TTTTTTTTTTACTTCCTTGTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:149678..149792,+__786.1.0.0	5	25	-	8.22581	9.02e-05	0.19	TTTTTTTTTTACTTCCTTGTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122238545..122238659,-__162.1.0.0	36	56	+	8.22581	9.02e-05	0.19	TAGTGGATTTACTTTTTTTTC
Stat4	WILDTYPE__Lincrna.noflip.NA__chr5:55290947..55291061,+__700.1.0.0	49	62	-	10.6897	9.03e-05	0.369	GTTACGGGAATCGC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	56	71	-	-10.9615	9.03e-05	0.329	CCTCCCGCCGCGGTGC
REST	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	89	109	-	4.31633	9.03e-05	0.241	TCCTCCACAGCGGCCAGGGCA
TP63	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	37	54	-	-3.37931	9.03e-05	1	GACATATACCAGCATGTA
NFATC1	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	73	82	+	10.4065	9.03e-05	1	TATTTCCACT
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	+	9.35714	9.03e-05	0.332	GGCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	+	9.35714	9.03e-05	0.332	GGCACGTGCC
MLX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	3	12	-	9.35714	9.03e-05	0.332	GGCACGTGCC
MLX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	3	12	-	9.35714	9.03e-05	0.332	GGCACGTGCC
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	30	46	-	-3.66667	9.03e-05	0.861	TGGTGACTCACAGGTCA
Rarb(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	15	31	+	-3.66667	9.03e-05	0.861	TGGTGACTCACAGGTCA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	17	27	+	10.2308	9.03e-05	0.0207	GCACCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	17	27	+	10.2308	9.03e-05	0.0207	GCACCGCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.0	15	25	-	10.2308	9.03e-05	0.0207	TGTCCACCCCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	15	25	-	10.2308	9.03e-05	0.0207	TGTCCACCCCC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.1.1	15	25	-	10.2308	9.03e-05	0.0207	TGTCCACCCCC
SP1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	26	36	+	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	17	27	-	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	31	41	+	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	25	35	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	29	39	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	29	39	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	42	52	+	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	44	54	+	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	52	62	+	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	69	79	+	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	69	79	+	10.2308	9.03e-05	0.0207	CTTCCTCCCTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	99	109	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	99	109	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	103	113	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	103	113	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	103	113	-	10.2308	9.03e-05	0.0207	CCTCCTCCTTC
Hes2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	33	45	-	10.4286	9.03e-05	0.577	CAGGCGCACGTGA
Hes2	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	51	63	+	10.4286	9.03e-05	0.577	CAGGCGCACGTGA
Hes2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	64	76	+	10.4286	9.03e-05	0.577	CAGGCGCACGTGA
Hes2	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	52	64	-	10.4286	9.03e-05	0.577	CAGGCGCACGTGA
Hes2	WILDTYPE__Antisense.noflip.NA__chr20:25604694..25604808,+__466.1.0.0	96	108	+	10.4286	9.03e-05	0.577	CCTGGAAACGTGT
Hes2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	98	110	-	10.4286	9.03e-05	0.577	GCTGGGCACATGC
Hes2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	98	110	-	10.4286	9.03e-05	0.577	GCTGGGCACATGC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	62	73	+	10.7636	9.03e-05	0.0936	GGCCCGCGGGGA
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	62	73	+	10.7636	9.03e-05	0.0936	GGCCCGCGGGGA
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	88	99	+	10.7636	9.03e-05	0.0936	CCCCCCGGGCCG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	-	10.7636	9.03e-05	0.0936	CGCCCGGCGGCT
PBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.1.0	22	33	+	10.3265	9.03e-05	1	AAATCAATCTTT
PBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145727624..145727738,+__1416.1.0.0	22	33	+	10.3265	9.03e-05	1	AAATCAATCTTT
PITX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	6	14	-	10.9808	9.03e-05	1	GTTAATCCT
PITX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	6	14	-	10.9808	9.03e-05	1	GTTAATCCT
PITX3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	17	25	-	10.9808	9.03e-05	1	GCTAATCCA
PITX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	17	25	-	10.9808	9.03e-05	1	GCTAATCCA
PITX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	17	25	-	10.9808	9.03e-05	1	GCTAATCCA
PITX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	17	25	-	10.9808	9.03e-05	1	GCTAATCCA
Hoxc9	WILDTYPE__Antisense.noflip.NA__chr12:113909731..113909845,+__211.1.0.0	48	60	-	10.5238	9.03e-05	1	TGCTATAAATTTA
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	6	22	+	2.72727	9.03e-05	0.0347	CGCACCCCGCCTCCAAG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	6	22	+	2.72727	9.03e-05	0.0347	CGCACCCCGCCTCCAAG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	6	22	+	2.72727	9.03e-05	0.0347	CGCACCCCGCCTCCAAG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	11	21	+	11	9.03e-05	0.159	AGCCGGAAGAC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	11	21	+	11	9.03e-05	0.159	AGCCGGAAGAC
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	43	53	+	11	9.03e-05	0.159	AGCCGGAAGAC
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	43	53	+	11	9.03e-05	0.159	AGCCGGAAGAC
ELF5	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	83	93	+	11	9.03e-05	0.159	AGCCGGAAGAC
ELF5	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	98	108	+	11	9.03e-05	0.159	AGCCGGAAACA
ELF5	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	22	32	-	11	9.03e-05	0.159	AGCCGGAAGAC
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	57	70	+	4.67347	9.04e-05	0.0779	GAGAGCAAGGGGGA
MEF2C	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	48	62	+	10.4237	9.04e-05	1	GAGCTATAAATACTA
MEF2C	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	53	67	-	10.4237	9.04e-05	1	GAGCTATAAATACTA
MTF1	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	3	16	-	5.45122	9.04e-05	0.523	TCCCCACCCGGCGC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	11.1475	9.04e-05	0.342	TCCACGTGAC
Npas2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	11.1475	9.04e-05	0.342	TCCACGTGAC
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	11.1475	9.04e-05	0.342	TCCACGTGAC
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	11.1475	9.04e-05	0.342	TCCACGTGAC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	36	47	+	10.7449	9.04e-05	0.0876	CGCCCCTGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	36	47	+	10.7449	9.04e-05	0.0876	CGCCCCTGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	36	47	+	10.7449	9.04e-05	0.0876	CGCCCCTGGGCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr17:1420139..1420253,-__2653.1.0.0	61	72	+	10.7449	9.04e-05	0.0876	TGGCGCGGGGCA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr17:1420139..1420253,+__351.1.0.0	43	54	-	10.7449	9.04e-05	0.0876	TGGCGCGGGGCA
NFKB1	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	40	52	+	1.04082	9.04e-05	0.263	TGGGGCTTCCCAG
NFKB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	65	77	+	1.04082	9.04e-05	0.263	CAGGGGTCCCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	63	75	-	1.04082	9.04e-05	0.263	TGGGGCTTCCCAG
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	63	75	-	1.04082	9.04e-05	0.263	TGGGGCTTCCCAG
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	56	67	-	9.98077	9.04e-05	0.368	GGACATGGCCGC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.1.0	82	93	-	9.98077	9.04e-05	0.368	GGACATGGCCGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:21984276..21984390,-__1597.1.0.0	82	93	-	9.98077	9.04e-05	0.368	GGACATGGCCGC
ZNF740	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	6	15	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	7	16	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	7	16	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	1	10	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	11	20	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	11	20	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	5	14	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	18	27	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	18	27	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr7:131012503..131012617,-__782.1.0.0	11	20	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	20	29	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	21	30	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	21	30	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	21	30	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	21	30	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Lincrna.flip.sense__chr15:40331441..40331555,+__313.1.0.0	24	33	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	25	34	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	25	34	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	30	39	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	32	41	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	25	34	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	30	39	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	30	39	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	31	40	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	31	40	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	32	41	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	41	50	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	41	50	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	34	43	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	34	43	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	46	55	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	38	47	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	48	57	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr7:131012532..131012646,-__2803.1.0.0	40	49	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	50	59	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	41	50	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	50	59	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	54	63	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	52	61	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	62	71	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	65	74	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	56	65	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__mrna.flip.sense__chr7:131012532..131012646,+__1220.1.0.0	66	75	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	57	66	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	57	66	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	58	67	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr11:76494073..76494187,-__198.1.0.0	70	79	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	72	81	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	65	74	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	76	85	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr15:40331441..40331555,-__2646.1.0.0	82	91	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr7:131012503..131012617,+__2424.1.0.0	95	104	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	101	110	+	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	99	108	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	100	109	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	105	114	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	105	114	-	10.1009	9.04e-05	0.0553	CCCCCTCCCC
NFKB2	WILDTYPE__Enhancer.flip.sense__chr9:137283246..137283360,-__2216.1.0.0	51	63	+	7.33333	9.04e-05	0.265	GGGTAGTTTCCCT
NFKB2	FLIPPED__Enhancer.flip.antisense__chr9:137283246..137283360,+__2603.1.0.0	52	64	-	7.33333	9.04e-05	0.265	GGGTAGTTTCCCT
NRF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	55	65	+	9.29091	9.04e-05	0.0243	CAGCGGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	45	55	-	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	60	70	+	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
NRF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	50	60	-	9.29091	9.04e-05	0.0243	CAGCGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	86	96	+	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	86	96	+	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	86	96	+	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	86	96	+	9.29091	9.04e-05	0.0243	GCGCGGGCGAG
HOXC12	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	51	61	-	10.0545	9.04e-05	1	AGTCATTAAAA
TCF4	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	11	20	-	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	27	36	-	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE__Antisense.noflip.NA__chr11:70244440..70244554,-__194.1.0.0	19	28	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	44	53	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	44	53	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	44	53	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	44	53	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	77	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	79	88	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	79	88	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
TCF4	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	95	104	+	11.3673	9.04e-05	0.422	CGCAGCTGGC
PRDM1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	41	55	+	9.78182	9.04e-05	0.345	TGGCAGGGAAAGCCC
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	60	74	-	9.78182	9.04e-05	0.345	TGGCAGGGAAAGCCC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	60	74	-	9.78182	9.04e-05	0.345	TGGCAGGGAAAGCCC
PRDM1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	60	74	-	9.78182	9.04e-05	0.345	TGGCAGGGAAAGCCC
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	60	74	-	9.78182	9.04e-05	0.345	TGGCAGGGAAAGCCC
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	22	32	-	8.86207	9.04e-05	0.0862	ACGCCGGCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	22	32	-	8.86207	9.04e-05	0.0862	ACGCCGGCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	22	32	-	8.86207	9.04e-05	0.0862	ACGCCGGCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	22	32	-	8.86207	9.04e-05	0.0862	ACGCCGGCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	44	54	-	8.86207	9.04e-05	0.0862	ACGGCCCCGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	44	54	-	8.86207	9.04e-05	0.0862	ACGGCCCCGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	44	54	-	8.86207	9.04e-05	0.0862	ACGGCCCCGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	44	54	-	8.86207	9.04e-05	0.0862	ACGGCCCCGCG
EGR2	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	88	98	+	8.86207	9.04e-05	0.0862	ACGCCGGCGCA
ATF7	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	18	31	+	6.68571	9.05e-05	0.244	CGCTGAGGTCATCG
ATF7	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	54	67	+	6.68571	9.05e-05	0.244	CGCTGAGGTCATCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	30	49	-	2.75229	9.05e-05	0.0743	CCATAAGACACACCCACCAG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	30	49	-	2.75229	9.05e-05	0.0743	CCATAAGACACACCCACCAG
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	30	49	-	2.75229	9.05e-05	0.0743	CCATAAGACACACCCACCAG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	37	56	-	2.75229	9.05e-05	0.0743	AACAACAACAACAAAACAGT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	51	70	-	2.75229	9.05e-05	0.0743	AAACAAAAAAACAAAAAAAC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	10	27	+	-15.9737	9.05e-05	0.0552	CAGAGGGAGGGAGGCTGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	79	96	+	-15.9737	9.05e-05	0.0552	CAGAGGGAGGGAGGCTGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	79	96	+	-15.9737	9.05e-05	0.0552	CAGAGGGAGGGAGGCTGC
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr16:54962763..54962877,+__2371.1.0.0	92	109	+	-15.9737	9.05e-05	0.0552	CGAGGGGAGCAGGGCGGG
EWSR1-FLI1	WILDTYPE__Lincrna.flip.sense__chr16:54962763..54962877,-__345.1.0.0	6	23	-	-15.9737	9.05e-05	0.0552	CGAGGGGAGCAGGGCGGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	46	60	-	9.78182	9.05e-05	0.114	GCCCCCCTGGGGGCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	46	60	-	9.78182	9.05e-05	0.114	GCCCCCCTGGGGGCG
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	46	60	-	9.78182	9.05e-05	0.114	GCCCCCCTGGGGGCG
ZIC4	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	47	61	-	9.78182	9.05e-05	0.114	TCCCTCCCGCGAGGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	54	68	+	9.78182	9.05e-05	0.114	TCCCTCCCGCGAGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	54	68	+	9.78182	9.05e-05	0.114	TCCCTCCCGCGAGGC
ZIC4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	55	69	+	9.78182	9.05e-05	0.114	GCCCCCCTGGGGGCG
MEF2D	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	46	57	+	5.41818	9.05e-05	1	GCAAATAATAGA
ELK4	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	28	38	-	10.6727	9.05e-05	0.078	GTTCTTCCGGG
ELK4	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	60	70	-	10.6727	9.05e-05	0.078	ACGCTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	45	55	+	10.6727	9.05e-05	0.078	ACGCTTCCTGG
ELK4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	45	55	+	10.6727	9.05e-05	0.078	ACGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	45	55	+	10.6727	9.05e-05	0.078	ACGCTTCCTGG
ELK4	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	77	87	+	10.6727	9.05e-05	0.078	GTTCTTCCGGG
Hoxa11	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	50	61	-	10.9032	9.05e-05	1	AGTCATTAAAAG
EGR1	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	7	20	+	9.63462	9.05e-05	0.0306	CTCTCGCCCTCTCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.1.0	21	34	-	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.0.0	21	34	-	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.5.0	21	34	-	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521821..47521935,+__1916.1.2.0	21	34	-	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	37	50	+	9.63462	9.05e-05	0.0306	GAGCCGCCTCCTGA
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	29	42	-	9.63462	9.05e-05	0.0306	GACCCGCCCTCGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	54	67	+	9.63462	9.05e-05	0.0306	TCCCAGCCGCCGCG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	42	55	-	9.63462	9.05e-05	0.0306	CTGCCACCTTCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	65	78	-	9.63462	9.05e-05	0.0306	GAGCCGCCTCCTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	65	78	-	9.63462	9.05e-05	0.0306	GAGCCGCCTCCTGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.1.0	79	92	+	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.5.0	79	92	+	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.2.0	79	92	+	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:47521819..47521933,-__2209.1.0.0	79	92	+	9.63462	9.05e-05	0.0306	ATTACGCCGCCGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	68	81	-	9.63462	9.05e-05	0.0306	CTGCAGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	68	81	-	9.63462	9.05e-05	0.0306	CTGCAGCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	68	81	-	9.63462	9.05e-05	0.0306	CTGCAGCCGCCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	68	81	-	9.63462	9.05e-05	0.0306	CTGCAGCCGCCGCC
EGR1	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	71	84	-	9.63462	9.05e-05	0.0306	TCTCTGCTCCCGCC
EGR1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	73	86	-	9.63462	9.05e-05	0.0306	GCTTCTCCTCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	95	108	-	9.63462	9.05e-05	0.0306	CTCTCGCCCTCTCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	25	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	52	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	52	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	52	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	52	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	52	-	10.3818	9.05e-05	0.0718	CCCCCGCGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	31	43	+	9.01724	9.05e-05	0.0578	GGCCGGCCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	31	43	+	9.01724	9.05e-05	0.0578	GGCCGGCCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	31	43	+	9.01724	9.05e-05	0.0578	GGCCGGCCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	71	83	-	9.01724	9.05e-05	0.0578	TGCCGGGGAGGCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	12	23	-	10.3289	9.05e-05	0.039	TTCACGCCCCCC
SP8	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	70	81	-	10.3289	9.05e-05	0.039	CTCCCGCCCCCC
SP8	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	34	45	+	10.3289	9.05e-05	0.039	CTCCCGCCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	34	45	+	10.3289	9.05e-05	0.039	GCCCCACCCCAT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	34	45	+	10.3289	9.05e-05	0.039	GCCCCACCCCAT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	62	73	+	10.3289	9.05e-05	0.039	GCCCCACCCCAT
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	62	73	+	10.3289	9.05e-05	0.039	GCCCCACCCCAT
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	92	103	+	10.3289	9.05e-05	0.039	TTCACGCCCCCC
NRL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	101	111	-	10.5	9.05e-05	0.823	AAATTGATGAC
NRL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	101	111	-	10.5	9.05e-05	0.823	AAATTGATGAC
EGR3	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	7	21	-	5.44828	9.05e-05	0.0418	TCCCGCCCCTGCTTG
EGR3	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	20	34	-	5.44828	9.05e-05	0.0418	CCACCCCCACCCCCG
EGR3	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	81	95	+	5.44828	9.05e-05	0.0418	CCACCCCCACCCCCG
EGR3	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	94	108	+	5.44828	9.05e-05	0.0418	TCCCGCCCCTGCTTG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr4:39640748..39640862,+__630.1.0.0	20	37	-	8.42683	9.05e-05	0.225	CTCGCCCCGATTGCTTCA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	1	16	+	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	1	16	+	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	1	16	+	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	1	16	+	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	1	16	+	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	31	46	+	9.70909	9.05e-05	0.0416	CCCCGCCCCTGGAATG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	28	43	-	9.70909	9.05e-05	0.0416	CCACCCCCCCCCGCCC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	64	79	+	9.70909	9.05e-05	0.0416	CTCAGCCCCCGCCTCC
EGR4	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	57	72	-	9.70909	9.05e-05	0.0416	TCCCTCCCCCACAACT
EGR4	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	72	87	+	9.70909	9.05e-05	0.0416	CCACCCCCCCCCGCCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	73	88	+	9.70909	9.05e-05	0.0416	CTCCGCCCTCCCCGCA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	73	88	+	9.70909	9.05e-05	0.0416	CTCCGCCCTCCCCGCA
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	99	114	-	9.70909	9.05e-05	0.0416	TTCCCCCCCCCCCCCC
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	52	61	+	10.7377	9.05e-05	0.726	AGTGCGGGCG
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	52	61	+	10.7377	9.05e-05	0.726	AGTGCGGGCG
GCM2	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	77	86	+	10.7377	9.05e-05	0.726	AGTGCGGGCG
GCM2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	63	72	-	10.7377	9.05e-05	0.726	AGTGCGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	31	41	+	10.1207	9.05e-05	0.0515	AGGCGGGGAGT
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	51	61	+	10.1207	9.05e-05	0.0515	AGGCGGGGACG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	51	61	+	10.1207	9.05e-05	0.0515	AGGCGGGGACG
IRF2	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	24	41	+	4.10092	9.05e-05	0.632	GGAAACTGAAACTACTTG
IRF2	WILDTYPE__Enhancer.noflip.NA__chr15:52024175..52024289,+__1867.1.0.0	7	24	-	4.10092	9.05e-05	0.632	GGAAACTGAAACTACTTG
PPARG	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	92	111	-	6.26667	9.05e-05	1	GTCGGTCATAGTGAGCTAGT
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	10	24	-	10.3874	9.05e-05	0.19	CTGTGTCAGGGTGCA
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	52	61	-	11.7115	9.05e-05	0.317	CCCACGTGAA
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	52	61	-	11.7115	9.05e-05	0.317	CCCACGTGAA
POU3F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	59	70	-	10.6747	9.05e-05	1	TCATGCTAATAT
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:66563807..66563921,-__1280.1.0.0	82	93	+	3.10976	9.05e-05	0.631	TCGCCCGCCGAC
Ar	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	25	41	+	5.7069	9.05e-05	0.882	AGGTAGAATGCGTACTA
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	37	53	-	5.7069	9.05e-05	0.882	GAGGACGAAACGTCCCG
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	37	53	-	5.7069	9.05e-05	0.882	GAGGACGAAACGTCCCG
Ar	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	74	90	-	5.7069	9.05e-05	0.882	AGGTAGAATGCGTACTA
Tcf12	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	70	80	-	10.8776	9.05e-05	0.206	GGCAGGTGGGA
Tcf12	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	35	45	+	10.8776	9.05e-05	0.206	GGCAGGTGGGA
MAFF	WILDTYPE__Enhancer.noflip.NA__chr21:44529241..44529355,+__1895.1.0.0	36	53	+	10.3333	9.05e-05	0.965	CACTCCTCAGCAAATCAG
MAFF	WILDTYPE__Enhancer.noflip.NA__chr21:44529217..44529331,-__2188.1.0.0	38	55	-	10.3333	9.05e-05	0.965	CACTCCTCAGCAAATCAG
EHF	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	40	51	-	9.59016	9.06e-05	0.145	TCACCGGAAGTC
EHF	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	64	75	+	9.59016	9.06e-05	0.145	TCACCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	64	75	+	9.59016	9.06e-05	0.145	TCACCGGAAGTC
EHF	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	69	80	+	9.59016	9.06e-05	0.145	AATCAGGAAATG
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	61	72	-	9.59016	9.06e-05	0.145	AATGCGGAAGAA
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	61	72	-	9.59016	9.06e-05	0.145	AATGCGGAAGAA
TGIF1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	35	46	+	-0.961538	9.06e-05	0.932	TGACCTTTGTCA
TGIF1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	69	80	-	-0.961538	9.06e-05	0.932	TGACCTTTGTCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	13	23	+	10.1818	9.06e-05	0.0576	CCCCACTCCCA
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	13	23	+	10.1818	9.06e-05	0.0576	CCCCACTCCCA
JUND(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	19	33	-	9.76596	9.06e-05	0.371	ACCGATGACCTCACG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	19	33	-	9.76596	9.06e-05	0.371	ACCGATGACCTCACG
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	82	96	+	9.76596	9.06e-05	0.371	ACCGATGACCTCACG
KLF13	WILDTYPE__Enhancer.noflip.NA__chr14:81685660..81685774,+__1991.1.0.0	10	27	+	3.60345	9.06e-05	0.352	GGAGCACGCACCTCCCAG
KLF13	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	78	95	+	3.60345	9.06e-05	0.352	GCACCACTCCCCTCCCAG
KLF13	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	20	37	-	3.60345	9.06e-05	0.352	CAGCAGCGCCCCCCGCAG
KLF13	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	20	37	-	3.60345	9.06e-05	0.352	GCACCACTCCCCTCCCAG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.1	75	85	-	10.8793	9.06e-05	0.298	CATTGTGGCTT
RUNX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:119051004..119051118,-__888.1.2.0	75	85	-	10.8793	9.06e-05	0.298	CATTGTGGCTT
HES5	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	69	80	-	1.44828	9.06e-05	0.298	CGACGCGCGCCT
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	22	31	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	22	31	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	22	31	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	31	40	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	76	85	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	76	85	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	93	102	+	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	22	-	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	99	108	-	10.9455	9.06e-05	0.135	CCCGGAAGCC
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	99	108	-	10.9455	9.06e-05	0.135	CCCGGAAGCC
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.0.0	28	41	+	-0.454545	9.06e-05	0.567	AGAGTTTAAGGTCA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839678..5839792,-__1541.1.1.0	28	41	+	-0.454545	9.06e-05	0.567	AGAGTTTAAGGTCA
RXRB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	48	61	+	-0.454545	9.06e-05	0.567	AGAGTTTAAGGTCA
RXRB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	48	61	+	-0.454545	9.06e-05	0.567	AGAGTTTAAGGTCA
Hic1	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	5	13	+	10.9038	9.06e-05	0.516	GTGCCCACT
Hic1	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	11	19	+	10.9038	9.06e-05	0.516	GTGCCCACT
Hic1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	27	35	+	10.9038	9.06e-05	0.516	GTGCCAGCA
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	27	35	+	10.9038	9.06e-05	0.516	GTGCCAGCA
Hic1	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	27	35	+	10.9038	9.06e-05	0.516	GTGCCCACT
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	35	43	+	10.9038	9.06e-05	0.516	ATGCCAATC
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	35	43	+	10.9038	9.06e-05	0.516	ATGCCAATC
Hic1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	81	89	+	10.9038	9.06e-05	0.516	GTGCCAGCA
Hic1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	72	80	-	10.9038	9.06e-05	0.516	ATGCCAATC
Hic1	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	80	88	-	10.9038	9.06e-05	0.516	GTGCCCACT
Hic1	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	96	104	-	10.9038	9.06e-05	0.516	GTGCCCACT
MYBL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	20	34	+	8.62295	9.06e-05	1	AGCAGGTGAACGGCT
MYBL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	20	34	+	8.62295	9.06e-05	1	AGCAGGTGAACGGCT
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.1	2	11	-	10.4857	9.06e-05	0.254	TGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.1.0	2	11	-	10.4857	9.06e-05	0.254	TGCAGCTGCG
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:30375049..30375163,+__2014.1.0.0	2	11	-	10.4857	9.06e-05	0.254	TGCAGCTGCG
Ascl2	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	64	73	-	10.4857	9.06e-05	0.254	AGCTGCTGTC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	16	25	+	10.4857	9.06e-05	0.254	AGCATCTGTC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.0.0	49	58	+	10.4857	9.06e-05	0.254	TGCAGCTGCG
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:65308062..65308176,-__1473.1.1.0	49	58	+	10.4857	9.06e-05	0.254	TGCAGCTGCG
KLF5	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	5	14	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	5	14	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	14	23	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	18	27	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.0.0	10	19	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	10	19	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	25	34	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr3:37903291..37903405,+__1193.1.0.0	34	43	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	38	47	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	38	47	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	38	47	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	38	47	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	78	87	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	78	87	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	78	87	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	78	87	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	81	90	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	72	81	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	76	85	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	91	100	+	10.4694	9.06e-05	0.0287	TCCTCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	96	105	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	96	105	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	101	110	+	10.4694	9.06e-05	0.0287	TTCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr3:37903291..37903405,-__2793.1.0.0	92	101	-	10.4694	9.06e-05	0.0287	TTCCCTCCCT
Klf4	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	19	28	+	10.1531	9.06e-05	0.0295	TGGGTGGCGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr15:52024108..52024222,-__2160.1.0.0	41	50	+	10.1531	9.06e-05	0.0295	GGGGTGGGTT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	103	112	-	10.1531	9.06e-05	0.0295	TGGGTGGCGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	103	112	-	10.1531	9.06e-05	0.0295	TGGGTGGCGC
ESR1	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	13	29	+	-1.51515	9.06e-05	0.514	GAGGGCGGGACGGCCTC
ESR1	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	86	102	-	-1.51515	9.06e-05	0.514	GAGGGCGGGACGGCCTC
EOMES	WILDTYPE__Enhancer.noflip.NA__chr13:31288901..31289015,-__2151.1.0.0	98	110	+	10.6463	9.06e-05	1	AGGGTGTGACGGC
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	20	29	-	11.6731	9.06e-05	0.404	GACACCTGGC
TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	20	29	-	11.6731	9.06e-05	0.404	GACACCTGGC
TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	20	29	-	11.6731	9.06e-05	0.404	GACACCTGGC
Sox1	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	5	19	+	2.13793	9.06e-05	1	AGCCCTTCCATTGGT
RUNX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	80	88	+	11.1731	9.06e-05	0.57	AGACCGCAG
RUNX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	80	88	+	11.1731	9.06e-05	0.57	AGACCGCAG
RUNX2	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	8	16	-	11.1731	9.06e-05	0.57	AGACCGCAG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	1	15	-	9.74138	9.06e-05	0.0185	GCTCCTCCTCGCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	1	15	-	9.74138	9.06e-05	0.0185	GCTCCTCCTCGCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	19	33	-	9.74138	9.06e-05	0.0185	CACCCTCCTCCCTGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	19	33	-	9.74138	9.06e-05	0.0185	CACCCTCCTCCCTGC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	35	49	+	9.74138	9.06e-05	0.0185	GCCCCACTTTCTCCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	35	49	+	9.74138	9.06e-05	0.0185	GCCCCACTTTCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	54	68	-	9.74138	9.06e-05	0.0185	GCGCCGCCTCCCTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	54	68	-	9.74138	9.06e-05	0.0185	GCGCCGCCTCCCTCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	54	68	-	9.74138	9.06e-05	0.0185	GCGCCGCCTCCCTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	54	68	-	9.74138	9.06e-05	0.0185	GCGCCGCCTCCCTCC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	83	97	-	9.74138	9.06e-05	0.0185	GCCCCACTTTCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	83	97	-	9.74138	9.06e-05	0.0185	GCCCCACTTTCTCCC
Zfx	WILDTYPE__Lincrna.flip.sense__chr1:762961..763075,+__91.1.0.0	16	29	-	10.0758	9.06e-05	0.0687	CCCGCCCCGGCCCG
Zfx	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	35	48	-	10.0758	9.06e-05	0.0687	AAACGCCCGGCCTG
Zfx	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	67	80	+	10.0758	9.06e-05	0.0687	AAACGCCCGGCCTG
Zfx	FLIPPED__Lincrna.flip.antisense__chr1:762961..763075,-__2625.1.0.0	86	99	+	10.0758	9.06e-05	0.0687	CCCGCCCCGGCCCG
Gata1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	67	77	-	10.8367	9.06e-05	1	CACTTATCTCC
Gata1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	67	77	-	10.8367	9.06e-05	1	CACTTATCTCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	71	83	-	9.59016	9.06e-05	0.0589	TGCCGGGGAGGCC
ZNF263	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	8	28	-	9.04082	9.07e-05	0.023	GGAGCGGGAGGAGGGAAACGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	21	41	-	9.04082	9.07e-05	0.023	CAATAAGGAGAGGGAGGGGCG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	68	88	-	9.04082	9.07e-05	0.023	GGAGGGGCCCGGGAGAGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	72	92	-	9.04082	9.07e-05	0.023	GAAGGGGAGCAAGGGAGGAGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	79	99	-	9.04082	9.07e-05	0.023	TGAAGAGGAGGTGGAGAATCA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	3	23	+	9.04082	9.07e-05	0.023	CGTGGGGGGAGAGGCGGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	26	46	+	9.04082	9.07e-05	0.023	AGGGGAGGGAAGGAGGAGCTG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	26	46	+	9.04082	9.07e-05	0.023	AGGGGAGGGAAGGAGGAGCTG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	26	46	+	9.04082	9.07e-05	0.023	AGGGGAGGGAAGGAGGAGCTG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	27	47	+	9.04082	9.07e-05	0.023	GGAGGGGCCCGGGAGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.0.0	67	87	+	9.04082	9.07e-05	0.023	TGAGGCAGTGGGTGGAGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.1.0	67	87	+	9.04082	9.07e-05	0.023	TGAGGCAGTGGGTGGAGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	67	87	+	9.04082	9.07e-05	0.023	TGAGGCAGTGGGTGGAGAGAG
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	67	87	+	9.04082	9.07e-05	0.023	TGAGGCAGTGGGTGGAGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.1.0	88	108	+	9.04082	9.07e-05	0.023	TGGGCTGGGAAGTGGGGAAAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:32655017..32655131,+__999.1.0.0	88	108	+	9.04082	9.07e-05	0.023	TGGGCTGGGAAGTGGGGAAAG
NR2C2	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	7	21	-	8.67143	9.07e-05	0.122	AGGGCTCAGAGGCGG
NR2C2	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	7	21	-	8.67143	9.07e-05	0.122	CGGGGGCGAGGGGAG
NR2C2	WILDTYPE__mrna.flip.sense__chr6:30294669..30294783,+__1216.1.0.0	23	37	+	8.67143	9.07e-05	0.122	CGGGGGCGAGGGGAG
NR2C2	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	25	39	+	8.67143	9.07e-05	0.122	CCGTGGGAGAGGCCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	26	40	-	8.67143	9.07e-05	0.122	CGGGAGGAGGGGTGA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	74	88	+	8.67143	9.07e-05	0.122	CGAGGTGAGGGATTG
NR2C2	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	76	90	-	8.67143	9.07e-05	0.122	CCGTGGGAGAGGCCG
NR2C2	FLIPPED__mrna.flip.antisense__chr6:30294669..30294783,-__2800.1.0.0	78	92	-	8.67143	9.07e-05	0.122	CGGGGGCGAGGGGAG
NR2C2	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	94	108	+	8.67143	9.07e-05	0.122	CGGGGGCGAGGGGAG
NR2C2	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	94	108	+	8.67143	9.07e-05	0.122	AGGGCTCAGAGGCGG
TFEB	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	9	18	+	10.8846	9.07e-05	0.207	ATCACATGCT
TFEB	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	43	52	-	10.8846	9.07e-05	0.207	ATCACATGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.0.0	20	30	+	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:46618518..46618632,-__1321.1.1.0	20	30	+	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	34	44	-	10.7308	9.07e-05	0.0758	TGCCCAGGGCG
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr10:123687943..123688057,+__2447.1.0.0	45	55	-	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr10:123687943..123688057,-__973.1.0.0	60	70	+	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	91	101	-	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	91	101	-	10.7308	9.07e-05	0.0758	GGCCCCGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	99	109	-	10.7308	9.07e-05	0.0758	CGCCCTGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	99	109	-	10.7308	9.07e-05	0.0758	CGCCCTGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	99	109	-	10.7308	9.07e-05	0.0758	CGCCCTGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	99	109	-	10.7308	9.07e-05	0.0758	CGCCCTGGGCG
IRF9	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	46	60	+	-3.92727	9.07e-05	0.734	GGGGAAAAAGAAACC
IRF9	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	46	60	+	-3.92727	9.07e-05	0.734	GGGGAAAAAGAAACC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	18	31	+	8	9.07e-05	0.041	CTCTCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.0.0	12	25	-	8	9.07e-05	0.041	GCTCGCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.1.0	12	25	-	8	9.07e-05	0.041	GCTCGCGCCCCTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.1	12	25	-	8	9.07e-05	0.041	GCTCGCGCCCCTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595660..86595774,+__1713.1.2.0	12	25	-	8	9.07e-05	0.041	GCTCGCGCCCCTCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	15	28	-	8	9.07e-05	0.041	CAGCACGCCTCTTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	28	41	-	8	9.07e-05	0.041	CTCTCCGCCCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	34	47	-	8	9.07e-05	0.041	CGTCCCACCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	50	63	+	8	9.07e-05	0.041	GGGCCCGCCCCGTC
KLF14	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	52	65	-	8	9.07e-05	0.041	GGGCCCGCCCCGTC
KLF14	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	68	81	+	8	9.07e-05	0.041	CGTCCCACCCCCCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	56	69	-	8	9.07e-05	0.041	CTCTCCGCCCCCTC
KLF14	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	74	87	+	8	9.07e-05	0.041	CTCTCCGCCCCCTC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	7	19	-	9.11475	9.07e-05	0.065	CCCCCCACAGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:42276740..42276854,+__2007.1.0.0	72	84	+	9.11475	9.07e-05	0.065	CCCCCCACAGGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	27	40	-	5.42553	9.07e-05	0.106	CGCCGCCTGCTGAC
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	27	40	-	5.42553	9.07e-05	0.106	CGCCGCCTGCTGAC
ZIC1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	75	88	+	5.42553	9.07e-05	0.106	CGCCGCCTGCTGAC
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	87	100	-	5.42553	9.07e-05	0.106	GACCGCCTGCGCTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	87	100	-	5.42553	9.07e-05	0.106	GACCGCCTGCGCTG
EBF1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	85	98	-	8.36066	9.07e-05	0.368	ACCCCCTAGGGCCG
HES7	FLIPPED__Enhancer.flip.antisense__chr3:44040604..44040718,+__2591.1.0.0	19	30	-	2.24138	9.07e-05	0.218	GGACACGTGACC
HES7	WILDTYPE__Enhancer.flip.sense__chr3:44040584..44040698,+__1901.1.0.0	39	50	-	2.24138	9.07e-05	0.218	GGACACGTGACC
HES7	FLIPPED__Enhancer.flip.antisense__chr3:44040584..44040698,-__2875.1.0.0	65	76	+	2.24138	9.07e-05	0.218	GGACACGTGACC
HES7	WILDTYPE__Enhancer.flip.sense__chr3:44040604..44040718,-__2194.1.0.0	85	96	+	2.24138	9.07e-05	0.218	GGACACGTGACC
HES7	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	98	109	-	2.24138	9.07e-05	0.218	TGACACGTGGGA
RXRG	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	52	65	+	0.617021	9.07e-05	0.509	GCGGTCAGAGGGTA
RXRG	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	50	63	-	0.617021	9.07e-05	0.509	GCGGTCAGAGGGTA
MNT	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	5	14	+	11.7727	9.07e-05	0.349	AGCACGTGGG
MNT	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	5	14	+	11.7727	9.07e-05	0.349	AGCACGTGGG
MNT	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	-	11.7727	9.07e-05	0.349	TACACGTGAC
MNT	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	64	73	-	11.7727	9.07e-05	0.349	AGCACGTGGG
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	44	57	-	10.3662	9.07e-05	0.306	CGAAAGGGAAAGGA
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	78	91	-	10.3662	9.07e-05	0.306	CGAAAGGGAAAGGA
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	53	62	-	10.6613	9.07e-05	1	TTTTTCCAAG
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	53	62	-	10.6613	9.07e-05	1	TTTTTCCAAG
NFAT5	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	81	90	-	10.6613	9.07e-05	1	TTTTTCCAAG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	58	71	-	1.72727	9.07e-05	0.267	AATTTCAGGAAGTT
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	9	23	+	10.8163	9.07e-05	1	GGAATGTTTGCCCAG
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	85	99	-	10.8163	9.07e-05	1	GGAATGTTTGCCCAG
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	66	79	+	5.43902	9.07e-05	0.523	TCTACAGGCGGCCC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	66	79	+	5.43902	9.07e-05	0.523	TCTACAGGCGGCCC
Lhx3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	1	13	-	9.47525	9.08e-05	1	TAATTAATTGATC
Lhx3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	1	13	-	9.47525	9.08e-05	1	TAATTAATTGATC
CTCF	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	42	60	+	8	9.08e-05	0.133	TCCCCTCCTGGGGGAGGGG
CTCF	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	58	76	+	8	9.08e-05	0.133	TTACCAGCAACTGGCGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	59	77	+	8	9.08e-05	0.133	CGCCCGCCCGGTGGAGCTT
CTCF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	55	73	-	8	9.08e-05	0.133	TCCCCTCCTGGGGGAGGGG
CTCF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	55	73	-	8	9.08e-05	0.133	TCCCCTCCTGGGGGAGGGG
CTCF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	55	73	-	8	9.08e-05	0.133	TCCCCTCCTGGGGGAGGGG
SP4	WILDTYPE__Antisense.noflip.NA__chr12:98909913..98910027,-__261.1.0.0	86	102	+	2.70909	9.08e-05	0.0348	CCGGCCCCGCGTCCTTA
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	75	84	+	10.8909	9.08e-05	0.173	GGCGCGTGTC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	75	84	+	10.8909	9.08e-05	0.173	GGCGCGTGTC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	75	84	+	10.8909	9.08e-05	0.173	GGCGCGTGTC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	75	84	+	10.8909	9.08e-05	0.173	GGCGCGTGTC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	82	91	-	9.41379	9.08e-05	0.249	GTCACCCGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	+	9.41379	9.08e-05	0.249	ATCACGTGTG
Srebf1(var.2)	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	24	33	+	9.41379	9.08e-05	0.249	GTCACCCGAT
ZBTB7B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.1.0	34	45	-	9.87931	9.08e-05	0.365	CCGACCCCCTTC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38034215..38034329,-__1697.1.0.0	34	45	-	9.87931	9.08e-05	0.365	CCGACCCCCTTC
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	61	72	-	9.87931	9.08e-05	0.365	TCGCCCACCCCC
NR1H2::RXRA	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	33	49	-	-6.5618	9.08e-05	1	GGGTGACAAAGGTCAGT
NR1H2::RXRA	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	66	82	+	-6.5618	9.08e-05	1	GGGTGACAAAGGTCAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	27	44	+	-15.9868	9.08e-05	0.0552	GGAAGGATAGATGCCATG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	27	44	+	-15.9868	9.08e-05	0.0552	GGAAGGATAGATGCCATG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	33	50	+	-15.9868	9.08e-05	0.0552	GGGACAAAGCCGGGAAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	19	36	-	-15.9868	9.08e-05	0.0552	GGAAGGATAGATGCCATG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	19	36	-	-15.9868	9.08e-05	0.0552	GGAAGGATAGATGCCATG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.1.0	62	79	-	-15.9868	9.08e-05	0.0552	AAGAGGAAGGGAGGCACC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:17255060..17255174,-__2228.1.0.0	62	79	-	-15.9868	9.08e-05	0.0552	AAGAGGAAGGGAGGCACC
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	65	82	-	-15.9868	9.08e-05	0.0552	GGGACAAAGCCGGGAAGA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr8:102504587..102504701,+__1236.1.0.0	36	46	+	10.8545	9.08e-05	0.0562	TCCCTCGGGCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	17	37	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	17	37	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	48	68	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	58	78	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	58	78	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	58	78	+	8.20968	9.08e-05	0.19	CTTTTTTTTTTTTTTTTTTTT
NFKB1	WILDTYPE__Lincrna.flip.sense__chr7:77325548..77325662,-__812.1.0.0	9	21	-	1.02041	9.08e-05	0.263	AGGTGGATCCCTC
NFKB1	FLIPPED__Lincrna.flip.antisense__chr7:77325548..77325662,+__2428.1.0.0	94	106	+	1.02041	9.08e-05	0.263	AGGTGGATCCCTC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	6	16	-	10.6545	9.08e-05	0.078	CAGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.1.0	29	39	-	10.6545	9.08e-05	0.078	CAGCTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:30951056..30951170,-__263.1.0.0	29	39	-	10.6545	9.08e-05	0.078	CAGCTTCCTGG
ELK4	WILDTYPE__Antisense.noflip.NA__chr11:18727948..18728062,+__169.1.0.0	20	30	+	10.6545	9.08e-05	0.078	CAGCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	29	39	+	10.6545	9.08e-05	0.078	CCTCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	35	45	+	10.6545	9.08e-05	0.078	CCTCTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	35	45	+	10.6545	9.08e-05	0.078	CCTCTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	55	65	+	10.6545	9.08e-05	0.078	CCTCTTCCTGG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr22:27727668..27727782,+__521.1.0.0	79	89	+	10.6545	9.08e-05	0.078	CAGCTTCCTGG
EN2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	6	15	-	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	6	15	-	10.4746	9.08e-05	1	ACCAATCAGC
EN2	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	88	97	-	10.4746	9.08e-05	1	ACCAATCAGC
EN2	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	91	100	-	10.4746	9.08e-05	1	ACCAATCAGC
EN2	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	95	104	-	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	3	12	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	3	12	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	3	12	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	11	20	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	11	20	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.1	13	22	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.0.0	13	22	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:174146730..174146844,-__407.1.1.0	13	22	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	14	23	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	14	23	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	15	24	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	18	27	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	18	27	+	10.4746	9.08e-05	1	ACCAATCAGC
EN2	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	49	58	+	10.4746	9.08e-05	1	ACCAATCAGC
ELF4	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	98	109	+	8.36066	9.08e-05	0.126	GCGCCGGAAGCA
ELF4	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	6	17	-	8.36066	9.08e-05	0.126	GCGCCGGAAGCA
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.1.0	22	32	+	10.6016	9.08e-05	0.0277	GCCGCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	22	32	+	10.6016	9.08e-05	0.0277	GCCGCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	31	41	+	10.6016	9.08e-05	0.0277	CACACACCCAA
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	31	41	+	10.6016	9.08e-05	0.0277	CACACACCCAA
SP3	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	57	67	+	10.6016	9.08e-05	0.0277	GCCGCTCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	98	108	+	10.6016	9.08e-05	0.0277	GCCTCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	98	108	+	10.6016	9.08e-05	0.0277	GCCTCACCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	5	15	-	10.6016	9.08e-05	0.0277	GCCGCTCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	48	58	-	10.6016	9.08e-05	0.0277	GCCGCTCCCCC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	12	21	-	10.0826	9.08e-05	0.0553	GCCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	35	44	+	10.0826	9.08e-05	0.0553	GCCCCGCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	34	43	-	10.0826	9.08e-05	0.0553	GCCCCGCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:117747335..117747449,-__1293.1.0.0	72	81	+	10.0826	9.08e-05	0.0553	GCCCCGCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr4:140374926..140375040,+__1402.1.0.0	64	73	-	10.0826	9.08e-05	0.0553	GCCCCGCCAC
Arntl	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	13	22	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	26	35	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	34	43	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	44	53	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	44	53	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	47	56	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	47	56	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	47	56	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	47	56	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	47	56	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	43	52	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	50	59	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	50	59	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	50	59	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	50	59	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	63	72	+	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	62	71	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Arntl	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	80	89	-	10.8361	9.08e-05	0.296	GGCCACGTGA
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	97	113	+	10.5132	9.08e-05	0.668	GACCGGGCGTCCGGTGA
Pou5f1::Sox2	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	33	47	-	9.91129	9.08e-05	1	TTTATTTATGCAAAA
CEBPD	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	40	49	+	10.8654	9.08e-05	0.805	CTTGTGCAAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	65	74	+	10.8654	9.08e-05	0.805	CTTACGTAAT
Foxk1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.1.0	73	89	+	10.013	9.08e-05	1	ATGTGGTAAACACTGGG
Foxk1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	73	89	+	10.013	9.08e-05	1	ATGTGGTAAACACTGGG
NFKB2	WILDTYPE__Antisense.noflip.NA__chr10:17276772..17276886,-__115.1.0.0	101	113	+	7.31818	9.08e-05	0.265	AGGGACTGCACCT
SOX4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:135309235..135309349,+__1909.1.0.0	24	39	-	-14.3636	9.09e-05	1	GTGTAATTTCAGGGTT
SOX4	FLIPPED__Enhancer.flip.antisense__chr5:135309235..135309349,-__2879.1.0.0	76	91	+	-14.3636	9.09e-05	1	GTGTAATTTCAGGGTT
MLXIPL	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.0455	9.09e-05	0.297	CACACGTGAT
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	47	56	+	10.7317	9.09e-05	0.472	ATCACCTGAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	47	56	+	10.7317	9.09e-05	0.472	ATCACCTGAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	47	56	+	10.7317	9.09e-05	0.472	ATCACCTGAG
SREBF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	47	56	+	10.7317	9.09e-05	0.472	ATCACCTGAG
ZNF410	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	83	99	+	-4.4	9.09e-05	1	GCCAGCCCACCATGCAC
PAX9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	46	62	-	-0.872727	9.09e-05	0.586	AGTCCCGCGCCGCTGGG
NOTO	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	21	30	+	10.8	9.09e-05	1	GCTCATTAGT
NOTO	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	85	94	-	10.8	9.09e-05	1	GCTCATTAGT
NOTO	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	85	94	-	10.8	9.09e-05	1	GCTCATTAGT
NOTO	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	85	94	-	10.8	9.09e-05	1	GCTCATTAGT
ETV1	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	11	9.09e-05	0.13	ACCGGAAAGA
ETV1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	11	9.09e-05	0.13	ACCGGAAAGA
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	11	9.09e-05	0.13	ACCGGAAAGA
ETV1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	11	9.09e-05	0.13	ACCGGAAAGA
ETV1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	11	9.09e-05	0.13	ACCGGAAAGA
ELK1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	22	31	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	22	31	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	22	31	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	24	33	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	24	33	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	16	25	-	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	16	25	-	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	38	47	+	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	77	-	9.59574	9.09e-05	0.109	ACCGGAAACC
ELK1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	77	-	9.59574	9.09e-05	0.109	ACCGGAAACC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	6	16	+	10.3636	9.09e-05	0.0718	CGCCGAGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	6	16	+	10.3636	9.09e-05	0.0718	CGCCGAGGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	6	16	+	10.3636	9.09e-05	0.0718	CGCCGAGGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	6	16	+	10.3636	9.09e-05	0.0718	CGCCGAGGGCA
NRF1	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	29	39	-	9.27273	9.09e-05	0.0245	CCGCAGGCCCA
NRF1	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	76	86	+	9.27273	9.09e-05	0.0245	CCGCAGGCCCA
ZNF143	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	53	68	-	0.189655	9.09e-05	0.471	CTGCCACAGTGCAGAG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	26	36	+	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	26	36	+	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	41	51	+	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	43	53	+	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	43	53	+	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	55	65	-	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
E2F4	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	64	74	-	10.1034	9.09e-05	0.0515	GCGCGGGGGCG
FOXC2	FLIPPED__Enhancer.flip.antisense__chr1:198625715..198625829,-__2837.1.0.0	40	51	+	10.9703	9.09e-05	1	AAAAAAAACAAA
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	64	75	-	10.9703	9.09e-05	1	AAAAAAAACAAA
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	64	75	-	10.9703	9.09e-05	1	AAAAAAAACAAA
FOXC2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.0.0	64	75	-	10.9703	9.09e-05	1	AAAAAAAACAAA
FOXC2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	64	75	-	10.9703	9.09e-05	1	AAAAAAAACAAA
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.1.0	68	87	-	2.73394	9.1e-05	0.0744	CCACACCCAAACCGGAAACC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566922..68567036,+__639.1.0.0	68	87	-	2.73394	9.1e-05	0.0744	CCACACCCAAACCGGAAACC
RREB1	FLIPPED__Antisense.flip.antisense__chr4:68566922..68567036,-__2701.1.0.0	28	47	+	2.73394	9.1e-05	0.0744	CCACACCCAAACCGGAAACC
TBX19	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	47	66	+	8.56098	9.1e-05	1	ATTAACAGAGAGGTGACATT
TBX19	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	49	68	-	8.56098	9.1e-05	1	ATTAACAGAGAGGTGACATT
TBX19	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	49	68	-	8.56098	9.1e-05	1	ATTAACAGAGAGGTGACATT
TBX19	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	49	68	-	8.56098	9.1e-05	1	ATTAACAGAGAGGTGACATT
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.1.0	53	64	-	10.3143	9.1e-05	0.226	GACGCCCACTGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974738..86974852,-__818.1.0.0	53	64	-	10.3143	9.1e-05	0.226	GACGCCCACTGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.0.0	100	111	-	10.3143	9.1e-05	0.226	GACGCCCACTGG
ZBTB7A	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:86974785..86974899,-__819.1.1.0	100	111	-	10.3143	9.1e-05	0.226	GACGCCCACTGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	47	58	+	10.3143	9.1e-05	0.226	TGCGACCTCAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	47	58	+	10.3143	9.1e-05	0.226	TGCGACCTCAGC
RXRA::VDR	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.1.0	11	25	-	5	9.1e-05	1	AGGTGACCGAGCTCA
RXRA::VDR	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:5839698..5839812,-__1542.1.0.0	11	25	-	5	9.1e-05	1	AGGTGACCGAGCTCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	42	56	+	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	42	56	+	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	28	42	-	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	28	42	-	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	59	73	-	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	73	87	+	5.43103	9.1e-05	0.0418	CCCCTCCCCCTCGTC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	69	83	-	5.43103	9.1e-05	0.0418	CCCCGCCTCCCCTAC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	69	83	-	5.43103	9.1e-05	0.0418	CCCCGCCTCCCCTAC
MEF2C	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	45	59	+	10.4068	9.1e-05	1	TGGTTATAAATAGTT
ERF	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	10	19	-	10.4857	9.1e-05	0.128	ACGGGAAGTC
Stat4	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	42	55	+	10.6724	9.1e-05	0.369	TTGCCGAGAAGACT
Stat4	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	60	73	-	10.6724	9.1e-05	0.369	TTGCCGAGAAGACT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.3.1	43	56	-	7.37705	9.1e-05	0.189	GGCCTCCCGCAGTT
PROX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	69	80	+	8	9.1e-05	1	CAAGTCGTCTTG
PROX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	69	80	+	8	9.1e-05	1	CAAGTCGTCTTG
PROX1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	98	109	+	8	9.1e-05	1	GAAGCCGCCTCA
Foxq1	FLIPPED__mrna.flip.antisense__chr2:63277906..63278020,-__2752.1.0.0	14	24	+	10.9286	9.1e-05	1	GGTTGTTTAGG
Foxq1	WILDTYPE__mrna.flip.sense__chr2:63277906..63278020,+__1061.1.0.0	91	101	-	10.9286	9.1e-05	1	GGTTGTTTAGG
GLI2	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	28	39	-	9.75862	9.1e-05	0.33	CCGACCACAGGA
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	33	44	-	9.75862	9.1e-05	0.33	GCGACCCCAAAA
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	33	44	-	9.75862	9.1e-05	0.33	GCGACCCCAAAA
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	33	44	-	9.75862	9.1e-05	0.33	GCGACCCCAAAA
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	87	98	-	9.75862	9.1e-05	0.33	GCGACCCCAAAA
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	87	98	-	9.75862	9.1e-05	0.33	GCGACCCCAAAA
GLI2	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	72	83	+	9.75862	9.1e-05	0.33	CCGACCACAGGA
NFIC::TLX1	WILDTYPE__mrna.noflip.NA__chr1:155278467..155278581,+__1303.1.0.0	58	71	+	4.26531	9.1e-05	0.382	CGGCCAGCAGCCAA
ATF4	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	47	59	-	8.98361	9.1e-05	0.744	TCGTGACGCCATC
ATF4	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	71	83	+	8.98361	9.1e-05	0.744	TCGTGACGCCATC
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	23	33	+	11.0517	9.1e-05	0.902	CTTTGTTTACT
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	23	33	+	11.0517	9.1e-05	0.902	CTTTGTTTACT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	85	95	+	11.0517	9.1e-05	0.902	CTTTGTTTACT
Foxo1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	20	30	-	11.0517	9.1e-05	0.902	CTTTGTTTACT
Foxo1	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	82	92	-	11.0517	9.1e-05	0.902	CTTTGTTTACT
USF1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	38	48	-	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	44	54	-	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	44	54	-	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	44	54	-	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	41	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	41	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	71	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	77	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	77	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	77	+	10.3673	9.1e-05	0.237	ATCACGTGTCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.1.0	6	18	+	9	9.1e-05	0.0578	GGCCTGCGAGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131580660..131580774,+__1706.1.0.0	6	18	+	9	9.1e-05	0.0578	GGCCTGCGAGGCG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	31	44	+	10.5192	9.1e-05	0.243	GGGAAGTGACACAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	31	44	+	10.5192	9.1e-05	0.243	GGGAAGTGACACAC
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	29	43	+	10.3784	9.1e-05	0.19	GTAGGTGACAGGACA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	29	43	+	10.3784	9.1e-05	0.19	GTAGGTGACAGGACA
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	59	77	+	9.98387	9.11e-05	0.155	GTGAGCAGTGGGGGAGAGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	59	77	+	9.98387	9.11e-05	0.155	GTGAGCAGTGGGGGAGAGC
PAX5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	13	31	-	9.98387	9.11e-05	0.155	GTGGGTAATCGTGTGTGCC
PAX5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	54	72	-	9.98387	9.11e-05	0.155	CGGCGCGCGCAGCCGGGAC
PAX5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	54	72	-	9.98387	9.11e-05	0.155	CGGCGCGCGCAGCCGGGAC
TFEC	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	+	11.122	9.11e-05	0.199	CTCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	+	11.122	9.11e-05	0.199	CTCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	+	11.122	9.11e-05	0.199	CTCACGTGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	1	13	+	9.57377	9.11e-05	0.0589	CCCCGCCCGGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	1	13	+	9.57377	9.11e-05	0.0589	CCCCGCCCGGGGA
POU3F2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	10	21	-	10.3226	9.11e-05	1	AAATGGAAATTT
POU3F2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	10	21	-	10.3226	9.11e-05	1	AAATGGAAATTT
CENPB	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	55	69	+	9.84615	9.11e-05	0.985	CCCGCGTCTCCCGGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.0.0	13	29	+	9.12245	9.11e-05	0.405	GGGTGAGTTAAAGTTTA
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645397..52645511,-__1446.1.1.0	13	29	+	9.12245	9.11e-05	0.405	GGGTGAGTTAAAGTTTA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	9	25	-	9.12245	9.11e-05	0.405	GGGGCGGAGGGAGGGGA
RUNX1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	8	18	-	10.8621	9.11e-05	0.298	GCCTGTGGCCG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	97	107	+	10.8621	9.11e-05	0.298	GCCTGTGGCCG
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	97	107	+	10.8621	9.11e-05	0.298	GCCTGTGGCCG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	97	107	+	10.8621	9.11e-05	0.298	GCCTGTGGCCG
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	97	107	+	10.8621	9.11e-05	0.298	GCCTGTGGCCG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	97	107	+	10.8621	9.11e-05	0.298	GCCTGTGGCCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.1.0	18	29	+	10.7455	9.11e-05	0.0941	TGCCTGCCGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:74700722..74700836,-__1511.1.0.0	18	29	+	10.7455	9.11e-05	0.0941	TGCCTGCCGGCG
E2F8	WILDTYPE__mrna.flip.sense__chr13:21750721..21750835,+__1010.1.0.0	36	47	+	3.08537	9.11e-05	0.631	TCTCTCGCCGAG
E2F8	FLIPPED__mrna.flip.antisense__chr13:21750721..21750835,-__2745.1.0.0	68	79	-	3.08537	9.11e-05	0.631	TCTCTCGCCGAG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr2:170440832..170440946,+__1358.1.0.0	61	78	+	-16	9.11e-05	0.0553	GTGGGGGAGGGAGGCGGT
TEAD4	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	79	88	+	10.9839	9.11e-05	0.839	CGCATTCTAC
TEAD4	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	27	36	-	10.9839	9.11e-05	0.839	CGCATTCTAC
Mafb	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	55	66	+	10.8539	9.11e-05	0.865	TACGCGCTGACG
Mafb	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	49	60	-	10.8539	9.11e-05	0.865	TACGCGCTGACG
Mafb	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	103	114	+	10.8539	9.11e-05	0.865	AAGATGCTGATG
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	103	114	+	10.8539	9.11e-05	0.865	AAGATGCTGATG
Mafb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	103	114	+	10.8539	9.11e-05	0.865	AAGATGCTGATG
Mafb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	103	114	+	10.8539	9.11e-05	0.865	AAGATGCTGATG
DBP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	39	50	+	10.7358	9.11e-05	1	CATTATGCAACC
DBP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	39	50	+	10.7358	9.11e-05	1	CATTATGCAACC
Zfx	WILDTYPE__mrna.noflip.NA__chr15:78556407..78556521,+__1364.1.0.0	45	58	-	10.0606	9.11e-05	0.0687	CCCCACCCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.1.0	78	91	+	10.0606	9.11e-05	0.0687	TCGAGTGGGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	78	91	+	10.0606	9.11e-05	0.0687	TCGAGTGGGGCCTT
Zfx	WILDTYPE__mrna.noflip.NA__chr21:47768077..47768191,+__1299.1.0.0	92	105	-	10.0606	9.11e-05	0.0687	GCACGCAAGGCCTA
Zfx	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	96	109	-	10.0606	9.11e-05	0.0687	CCAGCCGCGCCCTC
HINFP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.0.0	9	20	-	10.0909	9.11e-05	0.111	CAGGGTCCCCAA
HINFP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:115106263..115106377,-__2234.1.1.0	9	20	-	10.0909	9.11e-05	0.111	CAGGGTCCCCAA
SCRT2	WILDTYPE__Antisense.noflip.NA__chr11:128565847..128565961,-__165.1.0.0	24	36	-	5.7377	9.11e-05	1	GAGCAAAAGGAGG
EMX1	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	1	10	-	10.2301	9.12e-05	1	GCTAATTGGC
SP3	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	6	16	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	7	17	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE__mrna.noflip.NA__chr8:144099866..144099980,+__1254.1.0.0	20	30	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	21	31	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr8:144099828..144099942,+__1225.1.0.0	58	68	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	94	104	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	94	104	+	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	19	29	-	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	19	29	-	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr8:144099828..144099942,-__2805.1.0.0	47	57	-	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	98	108	-	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	99	109	-	10.5935	9.12e-05	0.0277	CCCCTGCCCCC
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr12:46766548..46766662,-__1000.1.0.0	30	42	-	9.09836	9.12e-05	0.065	GGCCGCCCGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	59	71	+	9.09836	9.12e-05	0.065	CGCCCGCCCGGCG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr12:46766548..46766662,+__2450.1.0.0	73	85	+	9.09836	9.12e-05	0.065	GGCCGCCCGGGCG
Klf1	WILDTYPE__mrna.noflip.NA__chr17:42992833..42992947,-__1350.1.0.0	3	13	-	10.1667	9.12e-05	0.0579	GGCAACACCCC
Tcf21	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	27	40	+	5.31579	9.12e-05	0.572	GAAACAGCTGTGCA
NFATC1	WILDTYPE__Enhancer.noflip.NA__chr5:55654724..55654838,-__2101.1.0.0	80	89	+	10.3984	9.12e-05	1	ACTTTCCACC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	13	29	-	2.69091	9.12e-05	0.0349	AGGGCTCCGCCCCAGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	13	29	-	2.69091	9.12e-05	0.0349	AGGGCTCCGCCCCAGCA
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.1.0	52	68	+	2.69091	9.12e-05	0.0349	TTGTCTCCTCCCCCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:8858030..8858144,+__913.1.0.0	52	68	+	2.69091	9.12e-05	0.0349	TTGTCTCCTCCCCCTCC
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	19	29	-	10.7308	9.12e-05	0.46	GCGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	19	29	-	10.7308	9.12e-05	0.46	GCGCTGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	94	104	+	10.7308	9.12e-05	0.46	GCGCTGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	94	104	+	10.7308	9.12e-05	0.46	GCGCTGAGTCA
IRF7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	11	24	-	7.8871	9.12e-05	0.786	CAGAAACTGGAAAT
IRF7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	11	24	-	7.8871	9.12e-05	0.786	CAGAAACTGGAAAT
GSC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	16	25	-	10.8679	9.12e-05	1	GCTAATCCAA
GSC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	16	25	-	10.8679	9.12e-05	1	GCTAATCCAA
GSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	16	25	-	10.8679	9.12e-05	1	GCTAATCCAA
GSC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	16	25	-	10.8679	9.12e-05	1	GCTAATCCAA
ESRRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	48	58	-	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	48	58	-	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	48	58	-	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	48	58	-	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	99	109	-	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	6	16	+	7.65517	9.12e-05	1	TCAAGGTAAAT
ESRRB	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	57	67	+	7.65517	9.12e-05	1	TCAAGGTAAAT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	9	20	-	10.7818	9.12e-05	0.0579	GGCCTGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	9	20	-	10.7818	9.12e-05	0.0579	GGCCTGGGGGCA
TFAP2A(var.2)	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	30	41	+	10.7818	9.12e-05	0.0579	TCGCCTCGGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	30	41	-	10.7818	9.12e-05	0.0579	GGCCTGGGGGCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr21:34638531..34638645,+__2386.1.0.0	46	57	+	10.7818	9.12e-05	0.0579	TGCCCCGCGCCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	54	65	+	10.7818	9.12e-05	0.0579	TGCCCGTAGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr21:34638531..34638645,-__502.1.0.0	58	69	-	10.7818	9.12e-05	0.0579	TGCCCCGCGCCT
TFAP2A(var.2)	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	74	85	-	10.7818	9.12e-05	0.0579	TCGCCTCGGGCG
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	3	16	+	4.2551	9.12e-05	0.382	TTGCCCGAGGCCAT
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	3	16	+	4.2551	9.12e-05	0.382	TTGCCCGAGGCCAT
EGR1	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	15	28	+	9.61538	9.12e-05	0.0308	ATGCCTCCCCTGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	10	23	-	9.61538	9.12e-05	0.0308	CCGTCTCCCCCTGA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	37	50	-	9.61538	9.12e-05	0.0308	CACCTTCCCCCGGA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	37	50	-	9.61538	9.12e-05	0.0308	CACCTTCCCCCGGA
EGR1	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	92	105	-	9.61538	9.12e-05	0.0308	ACGCTGCCGCCGCC
NR2C2	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	21	35	-	8.65714	9.12e-05	0.122	CTGGGGCGGAAGGCA
NR2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	25	37	+	10.6735	9.12e-05	0.531	GTGGGGTCATATG
NR2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	25	37	+	10.6735	9.12e-05	0.531	GTGGGGTCATATG
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr20:52269003..52269117,+__1960.1.0.0	45	57	-	10.6735	9.12e-05	0.531	GTGGGGTCATATG
EBF1	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	93	106	-	8.34426	9.12e-05	0.368	TTTCCCTTGGAACC
CREB3L1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	46	59	+	7.78788	9.12e-05	0.357	CGCCCACGTCACCT
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	89	103	-	9.76364	9.12e-05	0.346	ATGGAGGGAAAGGGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	12	26	-	7.44262	9.12e-05	0.0731	TATCACGCCCAAGGG
Klf12	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	30	44	+	7.44262	9.12e-05	0.0731	TATCACGCCCAAGGG
Klf12	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	48	62	+	7.44262	9.12e-05	0.0731	GACCGCACCCACTGC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	49	63	+	7.44262	9.12e-05	0.0731	GGCGACGCTCTCCGC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	62	76	+	7.44262	9.12e-05	0.0731	GACCCCTCCCACTGC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	53	67	-	7.44262	9.12e-05	0.0731	GACCGCACCCACTGC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	53	67	-	7.44262	9.12e-05	0.0731	GACCGCACCCACTGC
POU3F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	6	17	+	10.6627	9.12e-05	1	GTATTCAAATGA
POU3F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	6	17	+	10.6627	9.12e-05	1	GTATTCAAATGA
POU3F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	6	17	+	10.6627	9.12e-05	1	GTATTCAAATGA
POU3F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	6	17	+	10.6627	9.12e-05	1	GTATTCAAATGA
POU3F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	6	17	+	10.6627	9.12e-05	1	GTATTCAAATGA
HOXA13	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	21	30	+	11	9.12e-05	1	ACCATAAAAC
SP1	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	25	35	-	10.2115	9.12e-05	0.0209	ACCCCTCCCTG
SP1	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	30	40	-	10.2115	9.12e-05	0.0209	TTTCCGCCTCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	75	85	+	10.2115	9.12e-05	0.0209	TTTCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	75	85	+	10.2115	9.12e-05	0.0209	TTTCCGCCTCT
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	75	85	+	10.2115	9.12e-05	0.0209	TTTCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	75	85	+	10.2115	9.12e-05	0.0209	TTTCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	91	101	-	10.2115	9.12e-05	0.0209	GGTCCTCCCTC
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	91	101	-	10.2115	9.12e-05	0.0209	GGTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	91	101	-	10.2115	9.12e-05	0.0209	GGTCCTCCCTC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	91	101	-	10.2115	9.12e-05	0.0209	GGTCCTCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	97	107	-	10.2115	9.12e-05	0.0209	GGTCCTCCCTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	9	22	-	7.98276	9.13e-05	0.041	AGACCCCCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	9	22	-	7.98276	9.13e-05	0.041	AGACCCCCCCCCCA
KLF14	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	11	24	-	7.98276	9.13e-05	0.041	CCCTCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	11	24	-	7.98276	9.13e-05	0.041	CCCTCCGCCCACCT
KLF14	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	28	41	-	7.98276	9.13e-05	0.041	CCCTCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	74	87	+	7.98276	9.13e-05	0.041	CCCTCCGCCCACCT
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	74	87	+	7.98276	9.13e-05	0.041	CCCTCCGCCCACCT
Myog	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	10	20	+	10.9796	9.13e-05	0.188	AACAGGTGTGG
Myog	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	41	51	-	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	74	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	74	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	74	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	74	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	87	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	87	+	10.9796	9.13e-05	0.188	GCCAGCTGCTG
Myog	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	95	105	-	10.9796	9.13e-05	0.188	AACAGGTGTGG
Myog	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	102	112	-	10.9796	9.13e-05	0.188	GCCAGCTGCTG
T	WILDTYPE__Enhancer.noflip.NA__chr2:136893871..136893985,+__1782.1.0.0	36	51	+	7.07692	9.13e-05	1	TAGCAAGTATGTGCGC
T	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.1.0	45	60	-	7.07692	9.13e-05	1	TAGCAAGTATGTGCGC
T	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:136893852..136893966,-__2075.1.0.0	45	60	-	7.07692	9.13e-05	1	TAGCAAGTATGTGCGC
T	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	72	87	-	7.07692	9.13e-05	1	AGACAACTGAGTGTGA
T	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.2.1	72	87	-	7.07692	9.13e-05	1	AGACAACTGAGTGTGA
MAX::MYC	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	4	14	-	9.70408	9.13e-05	0.379	GGACACATGGT
MAX::MYC	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	101	111	+	9.70408	9.13e-05	0.379	GGACACATGGT
ZIC4	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	12	26	-	9.76364	9.13e-05	0.114	GCAGCCCCGCTGCTT
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	85	99	-	9.76364	9.13e-05	0.114	GACCCCCTAGGGCCG
ZIC4	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	89	103	+	9.76364	9.13e-05	0.114	GCAGCCCCGCTGCTT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.2.0	85	95	-	9.74545	9.13e-05	0.425	ATTATGGGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.0.0	85	95	-	9.74545	9.13e-05	0.425	ATTATGGGAAT
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:24528318..24528432,-__2240.1.3.0	85	95	-	9.74545	9.13e-05	0.425	ATTATGGGAAT
PKNOX2	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	35	46	-	1.96721	9.13e-05	0.683	TCCCAGGTGCCA
PKNOX2	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	55	66	-	1.96721	9.13e-05	0.683	TGACAGATAGCA
PKNOX2	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	69	80	+	1.96721	9.13e-05	0.683	TCCCAGGTGCCA
ELK4	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	43	53	-	10.6364	9.13e-05	0.078	GAACTTCCTGG
ELK4	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	61	71	-	10.6364	9.13e-05	0.078	GAACTTCCTGG
ELK4	WILDTYPE__Enhancer.noflip.NA__chr17:42276716..42276830,-__2300.1.0.0	101	111	-	10.6364	9.13e-05	0.078	GCGTTTCCGCG
ELK4	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	62	72	+	10.6364	9.13e-05	0.078	GAACTTCCTGG
ELK4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	93	103	+	10.6364	9.13e-05	0.078	GAACTTCCTGG
ELK4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	93	103	+	10.6364	9.13e-05	0.078	GAACTTCCTGG
E2F4	WILDTYPE__Antisense.noflip.NA__chr6:30294093..30294207,-__746.1.0.0	84	94	-	10.0862	9.13e-05	0.0516	CCGCGGGGAGA
E2F4	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	104	114	-	10.0862	9.13e-05	0.0516	CCGCGGGGAGA
USF2	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	77	87	+	10.551	9.13e-05	0.182	ATCATGTGGGC
SREBF2	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	7	16	-	10.5843	9.13e-05	0.883	GTGACCTGAT
ZIC1	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	37	50	-	5.40426	9.13e-05	0.106	TCCACCCCGCCGCC
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	51	64	+	5.40426	9.13e-05	0.106	CACAGCCTGCGGGG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	51	64	+	5.40426	9.13e-05	0.106	CACAGCCTGCGGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	51	64	+	5.40426	9.13e-05	0.106	CACAGCCTGCGGGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	66	79	+	5.40426	9.13e-05	0.106	CACAGCCTGCGGGG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	66	79	+	5.40426	9.13e-05	0.106	CACAGCCTGCGGGG
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr6:134758778..134758892,+__732.1.0.0	44	55	-	1.42857	9.13e-05	1	TGACATATACCA
MNT	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	25	34	-	11.7576	9.13e-05	0.349	TGCACGTGCG
MNT	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	81	90	+	11.7576	9.13e-05	0.349	TGCACGTGCG
SP2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	16	30	+	9.72414	9.13e-05	0.0186	GCCCCTCCCAGCACA
SP2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.1	16	30	+	9.72414	9.13e-05	0.0186	GCCCCTCCCAGCACA
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	47	61	-	9.72414	9.13e-05	0.0186	ACCCCGCTCCCACAC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.1.0	65	79	-	9.72414	9.13e-05	0.0186	GTCCTGCCCCTGATG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:175162049..175162163,-__960.1.0.0	65	79	-	9.72414	9.13e-05	0.0186	GTCCTGCCCCTGATG
TFAP2C	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	93	104	+	10.7347	9.13e-05	0.0876	GGCCTCGGGGGA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	11	22	-	10.7347	9.13e-05	0.0876	GGCCTCGGGGGA
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	27	41	-	6.40789	9.13e-05	0.292	CACGTGACTCAGGAG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	47	61	-	6.40789	9.13e-05	0.292	CACGTGACTCAGGAG
Mitf	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	4	13	+	10.4592	9.13e-05	0.283	GAGCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	4	13	+	10.4592	9.13e-05	0.283	GAGCACGTGG
Mitf	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	6	15	+	10.4592	9.13e-05	0.283	GAGCACGTGG
Mitf	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	65	74	-	10.4592	9.13e-05	0.283	GAGCACGTGG
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	6	15	+	9.84677	9.14e-05	0.0517	GCCGCGTGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	13	22	+	9.84677	9.14e-05	0.0517	GCCACGCGGC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	6	15	-	9.84677	9.14e-05	0.0517	GCCACGCGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	13	22	-	9.84677	9.14e-05	0.0517	GCCGCGTGGC
Tcfl5	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	46	55	+	9.84677	9.14e-05	0.0517	GGCTCGTGCT
Tcfl5	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	46	55	+	9.84677	9.14e-05	0.0517	GGCTCGTGCT
Tcfl5	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	46	55	-	9.84677	9.14e-05	0.0517	AGCACGAGCC
Tcfl5	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	46	55	-	9.84677	9.14e-05	0.0517	AGCACGAGCC
Tcfl5	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	61	70	+	9.84677	9.14e-05	0.0517	AGCACGAGCC
Tcfl5	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	61	70	-	9.84677	9.14e-05	0.0517	GGCTCGTGCT
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	81	90	+	9.84677	9.14e-05	0.0517	AGCACGAGCC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	81	90	-	9.84677	9.14e-05	0.0517	GGCTCGTGCT
Tcfl5	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	93	102	+	9.84677	9.14e-05	0.0517	GCCGCGTGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	93	102	-	9.84677	9.14e-05	0.0517	GCCACGCGGC
JDP2(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	64	75	+	5.63265	9.14e-05	0.266	CGTTACGTAATT
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	-	5.63265	9.14e-05	0.266	AATTACGTAAGG
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	28	38	+	10.2787	9.14e-05	0.0794	CAGGAAGTCAG
Gabpa	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	44	54	+	10.2787	9.14e-05	0.0794	GCGGAACTGAC
Gabpa	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	61	71	-	10.2787	9.14e-05	0.0794	GCGGAACTGAC
RORA	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	16	25	+	11.3483	9.14e-05	0.973	ACCGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	37	46	+	11.3483	9.14e-05	0.973	ATTCAGGTCA
RORA	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	41	50	+	11.3483	9.14e-05	0.973	CTCGAGGTCA
RORA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	42	51	+	11.3483	9.14e-05	0.973	CTCGAGGTCA
RORA	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	51	60	-	11.3483	9.14e-05	0.973	ACCGAGGTCA
RORA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	90	99	-	11.3483	9.14e-05	0.973	ACCGAGGTCA
RORA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	90	99	-	11.3483	9.14e-05	0.973	ACCGAGGTCA
CTCF	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	26	44	+	7.98361	9.14e-05	0.133	CGGGCGCCAGGGGGTTCAA
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	14	32	-	7.98361	9.14e-05	0.133	AGTCCTGACGGGGGCGGGG
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	44	62	+	7.98361	9.14e-05	0.133	TCGCTAGCTGGGGGCGGAG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	44	62	+	7.98361	9.14e-05	0.133	TCGCTAGCTGGGGGCGGAG
CTCF	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	71	89	-	7.98361	9.14e-05	0.133	CGGGCGCCAGGGGGTTCAA
CTCF	WILDTYPE__Enhancer.noflip.NA__chr5:173312769..173312883,+__1807.1.0.0	91	109	-	7.98361	9.14e-05	0.133	TCTTCACAAGGCGGCAGGA
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	10	25	+	9.69091	9.14e-05	0.0416	TCCCGCACCCGCGTGC
EGR4	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	1	16	-	9.69091	9.14e-05	0.0416	ACCTGCCCACTCCCTT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	82	97	-	9.69091	9.14e-05	0.0416	TCTCGCCCGCGCGCCG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	82	97	-	9.69091	9.14e-05	0.0416	TCTCGCCCGCGCGCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	82	97	-	9.69091	9.14e-05	0.0416	TCTCGCCCGCGCGCCG
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	82	97	-	9.69091	9.14e-05	0.0416	TCTCGCCCGCGCGCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	95	110	-	9.69091	9.14e-05	0.0416	CTCCGCCCACCGTTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	95	110	-	9.69091	9.14e-05	0.0416	CTCCGCCCACCGTTCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	95	110	-	9.69091	9.14e-05	0.0416	CTCCGCCCACCGTTCC
Nkx3-1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	78	86	-	11.1636	9.14e-05	1	GACACTTAA
Nkx3-1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	78	86	-	11.1636	9.14e-05	1	GACACTTAA
POU4F1	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	44	57	-	10.4016	9.14e-05	1	ATAAATAAATAACT
ELF1	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	40	51	+	8.12727	9.14e-05	0.135	GAACCGGAAACT
ELF1	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	57	68	+	8.12727	9.14e-05	0.135	TTCACGGAAATG
ELF1	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	67	-	8.12727	9.14e-05	0.135	AAAGAGGAAGTC
ELF1	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	75	-	8.12727	9.14e-05	0.135	GAACCGGAAACT
Gata4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	40	50	+	11	9.14e-05	1	CCCTATCTCTC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	40	50	+	11	9.14e-05	1	CCCTATCTCTC
Gata4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	40	50	+	11	9.14e-05	1	CCCTATCTCTC
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	40	50	+	11	9.14e-05	1	CCCTATCTCTC
Gata4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	65	75	-	11	9.14e-05	1	CCCTATCTCTC
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	10.7183	9.14e-05	0.176	GGCGGAAGTG
Pax6	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	4	17	-	10.0778	9.14e-05	1	TACAGGCATGATTG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	86	103	+	3.56897	9.14e-05	0.352	GGATCACGCCCTTGATTC
KLF13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	86	103	+	3.56897	9.14e-05	0.352	GGATCACGCCCTTGATTC
MYF6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	61	70	-	9.80303	9.14e-05	1	AACAGCTGAT
MYF6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	61	70	-	9.80303	9.14e-05	1	AACAGCTGAT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	39	48	-	10.9818	9.14e-05	0.151	ACCGGAAAGA
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	39	48	-	10.9818	9.14e-05	0.151	ACCGGAAAGA
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	39	48	-	10.9818	9.14e-05	0.151	ACCGGAAAGA
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	39	48	-	10.9818	9.14e-05	0.151	ACCGGAAAGA
ERG	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	67	76	+	10.9818	9.14e-05	0.151	ACCGGAAAGA
E2F8	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	3	14	-	3.07317	9.14e-05	0.631	ACTCCGGCCAAT
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	71	82	+	3.07317	9.14e-05	0.631	TTTCCCCCCGCA
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	71	82	+	3.07317	9.14e-05	0.631	TTTCCCCCCGCA
E2F8	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	101	112	+	3.07317	9.14e-05	0.631	ACTCCGGCCAAT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	36	53	-	-16.0132	9.15e-05	0.0554	GAGGGGGCGGGAGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	36	53	-	-16.0132	9.15e-05	0.0554	GAGGGGGCGGGAGGAGGC
TFAP2C(var.2)	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	10	20	+	10.7115	9.15e-05	0.0758	AGCCCTGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	16	26	+	10.7115	9.15e-05	0.0758	GGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	16	26	+	10.7115	9.15e-05	0.0758	GGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	8	18	-	10.7115	9.15e-05	0.0758	CGCCTCAGGGC
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr11:9779755..9779869,+__203.1.0.0	21	31	-	10.7115	9.15e-05	0.0758	CGCCCACGGCT
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	37	47	+	10.7115	9.15e-05	0.0758	AGCCCTGGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	45	55	+	10.7115	9.15e-05	0.0758	CGCCTCAGGGC
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	53	63	-	10.7115	9.15e-05	0.0758	GGCCCGGGGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.0	64	74	-	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.0.0	64	74	-	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:86595464..86595578,-__1712.1.1.1	64	74	-	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.0	85	95	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.0.0	85	95	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.2.1	85	95	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:3776356..3776470,+__1583.1.1.0	85	95	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.1.0	91	101	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	91	101	+	10.7115	9.15e-05	0.0758	CGCCTGGAGCG
TFAP2C(var.2)	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	95	105	-	10.7115	9.15e-05	0.0758	AGCCCTGGGCG
TFAP4	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	55	64	-	10	9.15e-05	0.655	TTCAGCTGGT
JUND	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	96	106	+	9.34043	9.15e-05	0.271	GCTGAGTCAGT
JUND	WILDTYPE__Enhancer.noflip.NA__chr17:7746046..7746160,-__2304.1.0.0	59	69	-	9.34043	9.15e-05	0.271	GCTGAGTCAGT
SP3	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	17	27	+	10.5854	9.15e-05	0.0277	ACCACGCCGCC
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	23	36	+	10.3521	9.15e-05	0.306	CCACACCGGAAGTC
SPIC	WILDTYPE__mrna.noflip.NA__chr20:4804219..4804333,-__1372.1.0.0	38	51	+	10.3521	9.15e-05	0.306	GACAAGGGGAGGAA
SPIC	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	68	81	-	10.3521	9.15e-05	0.306	CTAAAGAGAAAGCA
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	22	33	-	10.3158	9.15e-05	0.0393	TCCCCGCCTCCT
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	25	36	-	10.3158	9.15e-05	0.0393	CACCCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	33	44	-	10.3158	9.15e-05	0.0393	GCCACAACCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	33	44	-	10.3158	9.15e-05	0.0393	GCCACAACCCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	33	44	-	10.3158	9.15e-05	0.0393	TCCCCGCCTCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	61	72	-	10.3158	9.15e-05	0.0393	ACCCCTCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.1	5	16	+	10.3158	9.15e-05	0.0393	CAAACGCCCATC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	22	+	8.98276	9.15e-05	0.0578	GGCCTTCCCGGCA
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	45	57	+	8.98276	9.15e-05	0.0578	GGCCGGGCGGGCG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	38	50	-	8.98276	9.15e-05	0.0578	TCCCCTCATGGGA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	61	73	+	8.98276	9.15e-05	0.0578	TCCCCTCATGGGA
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	58	70	-	8.98276	9.15e-05	0.0578	GGCCGGGCGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	71	83	+	8.98276	9.15e-05	0.0578	GGCCTCCCCGGCA
RARA::RXRA	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	21	37	+	9.11224	9.15e-05	0.405	GGGTGAGGGCGGGGTGG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	75	91	+	9.11224	9.15e-05	0.405	GGGTCATAAAAATGGCG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	75	91	+	9.11224	9.15e-05	0.405	GGGTCATAAAAATGGCG
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	79	88	-	10.4918	9.15e-05	0.389	AACACCTGAC
ID4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.1.0	79	88	-	10.4918	9.15e-05	0.389	AACACCTGAC
ID4	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	27	36	+	10.4918	9.15e-05	0.389	AACACCTGAC
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	76	89	-	4.63265	9.15e-05	0.0782	GGCTGCTAAAGGGG
EGR2	FLIPPED__mrna.flip.antisense__chr10:38146503..38146617,+__2477.1.0.0	20	30	+	8.82759	9.15e-05	0.0862	TCTCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.0	85	95	-	8.82759	9.15e-05	0.0862	TCTCCCCCGCA
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.1.0	85	95	-	8.82759	9.15e-05	0.0862	TCTCCCCCGCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.0.0	85	95	-	8.82759	9.15e-05	0.0862	TCTCCCCCGCA
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr10:38146503..38146617,-__1146.1.2.1	85	95	-	8.82759	9.15e-05	0.0862	TCTCCCCCGCA
SMAD3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	91	100	+	8.81818	9.15e-05	1	TGCCTAGACT
TP63	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	86	103	-	-3.44828	9.15e-05	1	GACTAGCTAAAACAGGTA
TP63	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	86	103	-	-3.44828	9.15e-05	1	GACTAGCTAAAACAGGTA
HES5	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	29	40	+	1.37931	9.15e-05	0.298	GCGCACGCGCCG
HES5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	36	47	+	1.37931	9.15e-05	0.298	GCGCACGCGCCG
HES5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	36	47	+	1.37931	9.15e-05	0.298	GCGCACGCGCCG
TGIF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	26	37	+	7.44037	9.15e-05	0.902	TGAGAGATGACA
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	36	49	-	9.44828	9.15e-05	0.326	GTTTCTATGGGAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	36	49	-	9.44828	9.15e-05	0.326	GTTTCTATGGGAAC
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	13	27	-	9.63636	9.16e-05	0.127	TTCCCGCGCGGCGCT
ZBTB33	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	35	49	-	9.63636	9.16e-05	0.127	TCATCGCGGGGGCTG
ZBTB33	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	60	74	+	9.63636	9.16e-05	0.127	CCCTCGCGGAACCCC
ZBTB33	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	88	102	+	9.63636	9.16e-05	0.127	TTCCCGCGCGGCGCT
ZBTB33	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	88	102	+	9.63636	9.16e-05	0.127	TTCCCGCGCGGCGCT
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	69	81	+	9.55738	9.16e-05	0.0589	GCCCTTTGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	19	31	-	9.55738	9.16e-05	0.0589	GGCCGGGAGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.0.0	19	31	-	9.55738	9.16e-05	0.0589	GGCCGGGAGGGGG
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	34	46	-	9.55738	9.16e-05	0.0589	GCCCTTTGGGGCG
BARHL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	46	55	-	10.44	9.16e-05	1	AATAAATGGT
BARHL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	46	55	-	10.44	9.16e-05	1	AATAAATGGT
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	23	33	-	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	23	33	-	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	27	37	-	9.25455	9.16e-05	0.0245	GCGCGTGTCCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	27	37	-	9.25455	9.16e-05	0.0245	GCGCGTGTCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	39	49	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	39	49	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	44	54	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	36	46	-	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	57	67	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	58	68	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	58	68	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	48	58	-	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	66	76	-	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	70	80	-	9.25455	9.16e-05	0.0245	GAGCTTGTGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	82	92	+	9.25455	9.16e-05	0.0245	CCGCCCGCCCG
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	25	34	+	10.7959	9.16e-05	0.167	CTCTCGTGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	25	34	+	10.7959	9.16e-05	0.167	CTCTCGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	33	42	+	10.7959	9.16e-05	0.167	ACCATGTGAC
TFE3	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	29	38	-	10.7959	9.16e-05	0.167	ACCATGTGAC
TFE3	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	77	86	+	10.7959	9.16e-05	0.167	ACCATGTGAC
TFE3	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	73	82	-	10.7959	9.16e-05	0.167	ACCATGTGAC
ZNF263	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	11	31	-	9.02041	9.16e-05	0.0231	TGGGAAGAGGGGGAATTAGGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.1.0	31	51	-	9.02041	9.16e-05	0.0231	GGGGGCGCAGAAGGAGGGCCA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	43	63	-	9.02041	9.16e-05	0.0231	TGGGGAGGAGAGGTGGAGGCC
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	43	63	-	9.02041	9.16e-05	0.0231	TGGGGAGGAGAGGTGGAGGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	43	63	-	9.02041	9.16e-05	0.0231	TGGGGAGGAGAGGTGGAGGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	76	96	-	9.02041	9.16e-05	0.0231	GAGGCAATAGAGGGAGTGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:13011056..13011170,-__166.1.1.0	80	100	-	9.02041	9.16e-05	0.0231	AATGCAGCAGGAGAGAGAGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	3	23	+	9.02041	9.16e-05	0.0231	AGTGGGGGGGTAGAGAGGGGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	3	23	+	9.02041	9.16e-05	0.0231	AGTGGGGGGGTAGAGAGGGGG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	52	72	+	9.02041	9.16e-05	0.0231	TGGGGAGGAGAGGTGGAGGCC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	89	109	+	9.02041	9.16e-05	0.0231	CGGGAAGCAGGCAGGAGAGGG
Pparg::Rxra	WILDTYPE__mrna.noflip.NA__chrX:47077559..47077673,+__1349.1.0.0	68	82	+	10.3694	9.16e-05	0.19	GCGGTGGAGGGGGCA
E2F1	WILDTYPE__mrna.noflip.NA__chr9:23826271..23826385,-__1391.1.0.0	5	16	+	10.4098	9.16e-05	0.452	TGTGGCGCGATT
E2F1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	36	47	+	10.4098	9.16e-05	0.452	CTCGGCGCCAGA
E2F1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	36	47	+	10.4098	9.16e-05	0.452	CTCGGCGCCAGA
ETS1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	8	17	+	10.8966	9.16e-05	0.12	AGCGGAAATC
ETS1	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	86	95	+	10.8966	9.16e-05	0.12	TCCGGAAGCA
ETS1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	98	107	-	10.8966	9.16e-05	0.12	AGCGGAAATC
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	98	107	-	10.8966	9.16e-05	0.12	AGCGGAAATC
Zfx	FLIPPED__mrna.flip.antisense__chr1:229644039..229644153,+__2474.1.0.0	6	19	+	10.0455	9.16e-05	0.0687	TGCAGCCTGGCCTG
Zfx	WILDTYPE__mrna.flip.sense__chr1:229644039..229644153,-__1136.1.0.0	96	109	-	10.0455	9.16e-05	0.0687	TGCAGCCTGGCCTG
PAX9	FLIPPED__Antisense.flip.antisense__chr4:183064944..183065058,+__2399.1.0.0	39	55	+	-0.909091	9.16e-05	0.586	ATTCACGGATGACCCCT
PAX9	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	49	65	+	-0.909091	9.16e-05	0.586	CGTGACGCACGGATGGC
PAX9	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.0.0	60	76	-	-0.909091	9.16e-05	0.586	ATTCACGGATGACCCCT
PAX9	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:183064944..183065058,-__621.1.1.0	60	76	-	-0.909091	9.16e-05	0.586	ATTCACGGATGACCCCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	42	58	+	2.67273	9.16e-05	0.035	CACGCCCCGCCCTGGCG
SP4	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	78	94	-	2.67273	9.16e-05	0.035	GTGTCCGCGCCCCCCGC
FOXA1	WILDTYPE__Enhancer.flip.sense__chr7:111724723..111724837,+__1915.1.0.0	49	63	+	10.7959	9.16e-05	1	TTCATGTTTGTACAG
FOXA1	FLIPPED__Enhancer.flip.antisense__chr7:111724723..111724837,-__2883.1.0.0	52	66	-	10.7959	9.16e-05	1	TTCATGTTTGTACAG
Hoxd8	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	65	81	+	10.4286	9.17e-05	1	CCAGTTATTAATAACAG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	32	48	+	4.50909	9.17e-05	0.619	ATTCACGCCTGGGCGGG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	32	48	+	4.50909	9.17e-05	0.619	ATTCACGCCTGGGCGGG
PAX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	32	48	+	4.50909	9.17e-05	0.619	ATTCACGCCTGGGCGGG
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	32	48	+	4.50909	9.17e-05	0.619	ATTCACGCCTGGGCGGG
FOXP1	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	29	43	+	10.4507	9.17e-05	0.385	AAATTGTAAAAACAA
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	72	86	-	10.4507	9.17e-05	0.385	AAATTGTAAAAACAA
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	72	86	-	10.4507	9.17e-05	0.385	AAATTGTAAAAACAA
FOXP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	85	99	-	10.4507	9.17e-05	0.385	AGGAAGTAAAGAAAC
FOXP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.0.0	85	99	-	10.4507	9.17e-05	0.385	AGGAAGTAAAGAAAC
FOXP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	85	99	-	10.4507	9.17e-05	0.385	AGGAAGTAAAGAAAC
Stat4	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	17	30	-	10.6552	9.17e-05	0.369	CTTCCCGGAAGGGC
Stat4	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	85	98	+	10.6552	9.17e-05	0.369	CTTCCCGGAAGGGC
HEY1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	+	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	-	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	-	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	+	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	+	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	+	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	-	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	-	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	-	10.8727	9.17e-05	0.173	GACACGTGAT
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	-	10.8727	9.17e-05	0.173	GACACGTGAT
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	58	69	-	9.74138	9.17e-05	0.33	GCGACCTCGCGG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	58	69	-	9.74138	9.17e-05	0.33	GCGACCTCGCGG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	58	69	-	9.74138	9.17e-05	0.33	GCGACCTCGCGG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	58	69	-	9.74138	9.17e-05	0.33	GCGACCTCGCGG
GLI2	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	71	82	-	9.74138	9.17e-05	0.33	GCGACCCCGCCG
GLI2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	33	44	+	9.74138	9.17e-05	0.33	GCGACCCCGCCG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	33	44	+	9.74138	9.17e-05	0.33	GCGACCCCGCCG
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	33	44	+	9.74138	9.17e-05	0.33	GCGACCCCGCCG
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	33	44	+	9.74138	9.17e-05	0.33	GCGACCCCGCCG
GLI2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	84	95	+	9.74138	9.17e-05	0.33	GCGCCCACATAC
NFIX	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	18	26	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	16	24	-	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	45	53	-	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	45	53	-	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.0.0	63	71	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.0	63	71	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.2.1	63	71	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:53879598..53879712,-__808.1.1.0	63	71	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	82	90	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	91	99	+	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	89	97	-	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.1.0	96	104	-	10.2128	9.17e-05	0.758	GGTGCCAGC
NFIX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	96	104	-	10.2128	9.17e-05	0.758	GGTGCCAGC
Crx	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	8	18	-	10.8276	9.17e-05	1	CTGAGGATTAA
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	38	50	-	9.08197	9.17e-05	0.065	TCCCCTCATGGGA
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	56	68	+	9.08197	9.17e-05	0.065	GCCCTTTAAGGCG
TFAP2B(var.3)	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	47	59	-	9.08197	9.17e-05	0.065	GCCCTTTAAGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	59	71	+	9.08197	9.17e-05	0.065	TCCCTTTCGGGGC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	61	73	+	9.08197	9.17e-05	0.065	TCCCCTCATGGGA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.1	61	73	+	9.08197	9.17e-05	0.065	TCCCGCGAGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.2.0	61	73	+	9.08197	9.17e-05	0.065	TCCCGCGAGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.1.0	61	73	+	9.08197	9.17e-05	0.065	TCCCGCGAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:156392133..156392247,-__559.1.0.0	61	73	+	9.08197	9.17e-05	0.065	TCCCGCGAGGGGG
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.1	59	78	-	2.70642	9.17e-05	0.0749	CCACAACCCCACCCCGGCAT
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.1.0	59	78	-	2.70642	9.17e-05	0.0749	CCACAACCCCACCCCGGCAT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	7	18	-	10.0758	9.17e-05	0.111	GGGGGTCCCCGG
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	7	18	-	10.0758	9.17e-05	0.111	GGGGGTCCCCGG
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	63	74	+	10.0758	9.17e-05	0.111	CACCCTCCGCGA
ELF5	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	17	27	+	10.9818	9.17e-05	0.159	AGCCGGATGTG
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	54	64	+	10.9818	9.17e-05	0.159	AAGAGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	54	64	+	10.9818	9.17e-05	0.159	AAGAGGAAGCA
ELF5	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	66	76	+	10.9818	9.17e-05	0.159	AAGAGGAAGCA
ELF5	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	82	92	+	10.9818	9.17e-05	0.159	AGCCGGATGTG
ELF5	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	33	-	10.9818	9.17e-05	0.159	AGCCGGATGTG
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	73	83	-	10.9818	9.17e-05	0.159	CGCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	73	83	-	10.9818	9.17e-05	0.159	CGCCGGAAGTT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	73	83	-	10.9818	9.17e-05	0.159	CGCCGGAAGTT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	73	83	-	10.9818	9.17e-05	0.159	CGCCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	77	87	-	10.9818	9.17e-05	0.159	AAGAGGAAGCA
ELF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	77	87	-	10.9818	9.17e-05	0.159	AAGAGGAAGCA
ELF5	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	98	-	10.9818	9.17e-05	0.159	AGCCGGATGTG
CEBPD	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	-	10.7308	9.17e-05	0.805	ATTGCGCCAT
CEBPD	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	+	10.7308	9.17e-05	0.805	ATTGCGCCAT
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	+	10.7308	9.17e-05	0.805	ATTGCGCCAT
CEBPD	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	+	10.7308	9.17e-05	0.805	ATTGCGCCAT
CLOCK	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	98	107	+	10.697	9.17e-05	0.585	AACAAGTGTC
CLOCK	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	98	107	+	10.697	9.17e-05	0.585	AACAAGTGTC
NR2C2	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	16	30	-	8.64286	9.17e-05	0.122	GGAGGGGGAAGGGAA
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.0.0	28	42	-	8.86364	9.18e-05	0.355	TTGCTTTTCTTTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029200..154029314,+__1987.1.1.0	28	42	-	8.86364	9.18e-05	0.355	TTGCTTTTCTTTTTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.0.0	64	78	+	8.86364	9.18e-05	0.355	TTGCTTTTCTTTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:154029191..154029305,-__2280.1.1.0	64	78	+	8.86364	9.18e-05	0.355	TTGCTTTTCTTTTTT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	3	13	-	10.1923	9.18e-05	0.021	CCTCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.1.0	3	13	-	10.1923	9.18e-05	0.021	CCTCCGCCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	19	29	+	10.1923	9.18e-05	0.021	CCACCGCCCCT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	19	29	+	10.1923	9.18e-05	0.021	CCACCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	19	29	+	10.1923	9.18e-05	0.021	CCACCGCCCCT
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	19	29	+	10.1923	9.18e-05	0.021	CCACCGCCCCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	74	84	-	10.1923	9.18e-05	0.021	ACACCGCCCCC
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	74	84	-	10.1923	9.18e-05	0.021	ACACCGCCCCC
Tcf7	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	74	85	+	8.58065	9.18e-05	1	AAGAATCAAAGG
Rhox11	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	42	58	+	10.6974	9.18e-05	1	ACTCAACTGTAAAACGT
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.1	57	73	-	10.6974	9.18e-05	1	ACTCAACTGTAAAACGT
Rhox11	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	57	73	-	10.6974	9.18e-05	1	ACTCAACTGTAAAACGT
Rhox11	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	57	73	-	10.6974	9.18e-05	1	ACTCAACTGTAAAACGT
CREB3L1	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	39	52	+	7.77273	9.18e-05	0.357	AAGCCACGTAGCGG
CREB3L1	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	55	68	+	7.77273	9.18e-05	0.357	TCGCCAGGTCCCCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	47	60	-	7.77273	9.18e-05	0.357	TCGCCAGGTCCCCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	47	60	-	7.77273	9.18e-05	0.357	TCGCCAGGTCCCCA
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	47	60	-	7.77273	9.18e-05	0.357	TCGCCAGGTCCCCA
CREB3L1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	63	76	-	7.77273	9.18e-05	0.357	AAGCCACGTAGCGG
CREB3L1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	63	76	-	7.77273	9.18e-05	0.357	AAGCCACGTAGCGG
Klf12	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	34	48	+	7.42623	9.18e-05	0.0731	GACCAAACCCCCGCT
Klf12	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	40	54	-	7.42623	9.18e-05	0.0731	GGCCGCGCCCCAGGC
Klf12	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	61	75	+	7.42623	9.18e-05	0.0731	GGCCGCGCCCCAGGC
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	45	62	-	8.39024	9.18e-05	0.225	CATGTTCTGATTGGGTGA
NFYA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	45	62	-	8.39024	9.18e-05	0.225	CATGTTCTGATTGGGTGA
NFYA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	45	62	-	8.39024	9.18e-05	0.225	CATGTTCTGATTGGGTGA
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	45	62	-	8.39024	9.18e-05	0.225	CATGTTCTGATTGGGTGA
NR3C2	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	+	3.87234	9.18e-05	1	ATAAACACCATGTTCCT
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	-	3.87234	9.18e-05	1	ATAAACACCATGTTCCT
NR3C2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	-	3.87234	9.18e-05	1	ATAAACACCATGTTCCT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	49	66	+	-16.0263	9.18e-05	0.0556	GGAAGAGACGAGGCAGGA
HOXD12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	10	20	-	10.2131	9.18e-05	1	GGTCGTAATTC
HOXD12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	10	20	-	10.2131	9.18e-05	1	GGTCGTAATTC
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	12	25	+	7.96552	9.18e-05	0.041	GAGCCCGCCTCCCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	12	25	+	7.96552	9.18e-05	0.041	GAGCCCGCCTCCCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	18	31	-	7.96552	9.18e-05	0.041	AGCCCAGCCCCCTT
KLF14	WILDTYPE__Enhancer.noflip.NA__chr12:10337187..10337301,-__2051.1.0.0	37	50	+	7.96552	9.18e-05	0.041	CAACACTCCCACTG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	46	59	+	7.96552	9.18e-05	0.041	CAACCCGCCTCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	46	59	+	7.96552	9.18e-05	0.041	CAACCCGCCTCCCC
KLF14	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	38	51	-	7.96552	9.18e-05	0.041	AGCCCAGCCCCCTT
KLF14	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	64	77	+	7.96552	9.18e-05	0.041	AGCCCAGCCCCCTT
KLF14	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	67	80	+	7.96552	9.18e-05	0.041	TGCCACGCCCTGTG
KLF14	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	84	97	+	7.96552	9.18e-05	0.041	AGCCCAGCCCCCTT
KLF14	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	72	85	-	7.96552	9.18e-05	0.041	GCGCCCGCCCCTTC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	90	103	-	7.96552	9.18e-05	0.041	CAACACTCCCACTG
MNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	7	16	+	10.3284	9.18e-05	1	AGCAATTAAG
MNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	7	16	+	10.3284	9.18e-05	1	AGCAATTAAG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	6	16	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	6	16	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	6	16	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	6	16	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	6	16	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	38	48	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	50	60	+	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	67	77	-	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	67	77	-	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	67	77	-	9.67213	9.18e-05	0.187	CACCGGAAAAG
ETV2	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	99	109	-	9.67213	9.18e-05	0.187	CACCGGAAAAG
SREBF2(var.2)	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	39	48	-	8.90909	9.18e-05	0.269	ATCAGCTGAC
SREBF2(var.2)	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	67	76	+	8.90909	9.18e-05	0.269	ATCAGCTGAC
ELF3	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	20	32	+	7.41379	9.18e-05	0.192	AAGCAGGAAATTC
ELF3	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	9	21	-	7.41379	9.18e-05	0.192	AAGCAGGAAATTC
HSF4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	39	51	+	10.1951	9.18e-05	1	TTCCAGGATGTTC
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	39	51	+	10.1951	9.18e-05	1	TTCCAGGATGTTC
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	15	31	-	-3.74242	9.18e-05	0.861	AGGTAGTGGGAAGGTCT
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	15	31	-	-3.74242	9.18e-05	0.861	AGGTAGTGGGAAGGTCT
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	15	31	-	-3.74242	9.18e-05	0.861	AGGTAGTGGGAAGGTCT
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.0	74	88	-	-3.98182	9.18e-05	0.734	GGCAAAACCAAAACA
IRF9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.1.1	74	88	-	-3.98182	9.18e-05	0.734	GGCAAAACCAAAACA
IRF9	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27775672..27775786,-__1656.1.0.0	74	88	-	-3.98182	9.18e-05	0.734	GGCAAAACCAAAACA
INSM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	27	38	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	27	38	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
INSM1	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	54	65	+	8.90816	9.18e-05	0.199	GTCCTGCGGGCA
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	69	80	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	69	80	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
INSM1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	69	80	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	69	80	+	8.90816	9.18e-05	0.199	TGGCGGGGGGCG
LEF1	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	46	60	+	7.87097	9.18e-05	1	AGAGTTAAAAGGGGA
LEF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	46	60	-	7.87097	9.18e-05	1	GAAGTTAAAAGGGAG
LEF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	46	60	-	7.87097	9.18e-05	1	GAAGTTAAAAGGGAG
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	12	21	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	12	21	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	12	21	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	12	21	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:201476261..201476375,+__40.1.0.0	13	22	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	58	67	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	68	77	+	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	38	47	-	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	38	47	-	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	48	57	-	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	FLIPPED__Antisense.flip.antisense__chr1:201476261..201476375,-__2617.1.0.0	93	102	-	11.0172	9.18e-05	0.659	GTTTTGTTCC
Sox3	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	94	103	-	11.0172	9.18e-05	0.659	GTTTTGTTCC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	47	60	-	9.07692	9.18e-05	0.529	ACTGACACATCATG
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	47	60	-	9.07692	9.18e-05	0.529	ACTGACACATCATG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	32	42	+	10.0517	9.18e-05	0.0517	GCGCGGCAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	32	42	+	10.0517	9.18e-05	0.0517	GCGCGGCAAGC
E2F4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	81	91	-	10.0517	9.18e-05	0.0517	GCGCGGCAAGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	81	91	-	10.0517	9.18e-05	0.0517	GCGCGGCAAGC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	5	12	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	10	17	-	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	19	26	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	19	26	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	19	26	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	19	26	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	19	26	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	33	40	-	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE__Antisense.noflip.NA__chrX:96819497..96819611,-__950.1.0.0	35	42	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	52	59	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	52	59	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	67	74	-	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	70	77	-	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	70	77	-	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	81	88	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	FLIPPED__Antisense.flip.antisense__chr14:95623944..95624058,-__2645.1.0.0	90	97	-	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.1	100	107	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	100	107	-	9.98077	9.18e-05	1	CTAATCCC
RHOXF1	WILDTYPE__Antisense.flip.sense__chr14:95623944..95624058,+__307.1.0.0	18	25	+	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr8:37457322..37457436,-__855.1.0.0	33	40	+	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	41	48	+	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	43	50	+	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE__Antisense.noflip.NA__chr3:195634867..195634981,+__573.1.0.0	64	71	+	9.98077	9.18e-05	1	TTAATCCC
RHOXF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	84	91	+	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	84	91	+	9.98077	9.18e-05	1	ATAATCCC
RHOXF1	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	89	96	+	9.98077	9.18e-05	1	TTAATCCC
TEAD3	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	35	42	-	11.9592	9.18e-05	0.954	GCATTCCG
TEAD3	WILDTYPE__mrna.noflip.NA__chr5:132073203..132073317,-__1406.1.0.0	47	54	-	11.9592	9.18e-05	0.954	GCATTCCG
TGIF1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	12	23	+	-1.03846	9.18e-05	0.932	TCACATCTGTTA
TGIF1	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	53	64	+	-1.03846	9.18e-05	0.932	TCACATCTGTTA
TGIF1	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	51	62	-	-1.03846	9.18e-05	0.932	TCACATCTGTTA
TGIF1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	92	103	-	-1.03846	9.18e-05	0.932	TCACATCTGTTA
PAX5	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	2	20	+	9.96774	9.18e-05	0.155	GCGAGCAGGCGAGCGGGCA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	12	30	-	9.96774	9.18e-05	0.155	GGTAGCAGGAGGGCGTGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	12	30	-	9.96774	9.18e-05	0.155	GGTAGCAGGAGGGCGTGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	27	45	-	9.96774	9.18e-05	0.155	GGTAGCAGGAGGGCGTGGC
PAX5	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	35	53	-	9.96774	9.18e-05	0.155	GCGGCCAGCCGACCGGCGC
PAX5	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	95	113	-	9.96774	9.18e-05	0.155	GCGAGCAGGCGAGCGGGCA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	13	27	-	9.07576	9.19e-05	0.368	TCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	13	27	-	9.07576	9.19e-05	0.368	TCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	45	59	+	9.07576	9.19e-05	0.368	TCACATGACCCAGCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	45	59	+	9.07576	9.19e-05	0.368	TCACATGACCCAGCT
Nfe2l2	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	74	88	-	9.07576	9.19e-05	0.368	CGGACTGACCCAGCT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	7	16	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	7	16	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	5	14	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	15	24	+	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	12	21	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	12	21	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	17	26	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	27	36	+	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	20	29	-	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	32	41	+	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	32	41	+	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	28	37	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	32	41	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	32	41	-	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	36	45	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.0.0	52	61	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:2207170..2207284,+__1519.1.1.0	52	61	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.1.0	65	74	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.1	65	74	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	74	83	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	65	74	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	78	87	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	86	95	+	10.0734	9.19e-05	0.0553	ACCCACCCAC
ZNF740	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	84	93	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	94	103	+	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.0.0	104	113	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	104	113	-	10.0734	9.19e-05	0.0553	CCCGCCCCAC
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	+	10.7245	9.19e-05	0.0876	TCCCGCGGGGCG
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	+	10.7245	9.19e-05	0.0876	TCCCGCGGGGCG
TFAP2C	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	-	10.7245	9.19e-05	0.0876	TCCCGCGGGGCG
TFAP2C	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	-	10.7245	9.19e-05	0.0876	TCCCGCGGGGCG
FOXP2	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	17	27	+	10.9394	9.19e-05	1	TTATAAACAGC
IRF2	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	6	23	+	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.1	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.2.0	92	109	-	4.04587	9.19e-05	0.632	GGAAAGAGAAGGCAAGCT
Hmx3	WILDTYPE__Lincrna.noflip.NA__chr11:62622801..62622915,-__185.1.0.0	37	53	-	10.2805	9.19e-05	1	AGCAGAGATTAAGAAAT
EHF	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	6	17	-	9.55738	9.19e-05	0.146	AACCAGGAGGTG
EHF	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	98	109	+	9.55738	9.19e-05	0.146	AACCAGGAGGTG
EVX2	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	68	77	-	10.12	9.19e-05	1	CGTCATTACC
Npas2	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	19	28	+	11.0984	9.19e-05	0.344	GACACGTGGG
Npas2	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	20	29	+	11.0984	9.19e-05	0.344	GACACGTGGG
Npas2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	99	108	-	11.0984	9.19e-05	0.344	GACACGTGGG
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	102	114	-	10.9796	9.19e-05	0.202	TCCAGCTGGCCTC
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	102	114	-	10.9796	9.19e-05	0.202	TCCAGCTGGCCTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.0	9	17	+	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.2.1	9	17	+	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	9	17	+	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	9	17	+	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	55	63	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	55	63	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	55	63	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.1.0	55	63	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	98	106	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	98	106	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	98	106	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	98	106	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	105	113	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	105	113	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	105	113	-	11.3146	9.19e-05	1	TGCATTGTC
Sox17	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	105	113	-	11.3146	9.19e-05	1	TGCATTGTC
NEUROG2	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	4	13	+	9.28788	9.19e-05	1	ACCATGTGTC
NEUROG2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	11	20	-	9.28788	9.19e-05	1	GACACATGCC
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	38	47	+	9.28788	9.19e-05	1	GACACATGCC
NEUROG2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	56	65	-	9.28788	9.19e-05	1	GACACATGCC
NEUROG2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	95	104	+	9.28788	9.19e-05	1	GACACATGCC
NEUROG2	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	102	111	-	9.28788	9.19e-05	1	ACCATGTGTC
ZIC1	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	98	111	-	5.38298	9.19e-05	0.106	CACCCGCCGCGGAG
TBX21	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	68	77	-	10.2545	9.19e-05	1	AGTGTGTGAA
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	7	21	+	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	7	21	+	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	7	21	+	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	7	21	+	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	19	33	+	5.39655	9.19e-05	0.0418	ACCCGGCCCCGCCCG
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	19	33	+	5.39655	9.19e-05	0.0418	ACCCGGCCCCGCCCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	19	33	+	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	19	33	+	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	19	33	+	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	27	41	+	5.39655	9.19e-05	0.0418	GGCCACCCACACAGG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.1.0	23	37	-	5.39655	9.19e-05	0.0418	CTCCGCCCACATTCC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:69707322..69707436,-__330.1.0.0	23	37	-	5.39655	9.19e-05	0.0418	CTCCGCCCACATTCC
EGR3	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	37	51	-	5.39655	9.19e-05	0.0418	GCGCGCCCGCGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	38	52	-	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	38	52	-	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	38	52	-	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	53	67	+	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	56	70	+	5.39655	9.19e-05	0.0418	GGCCACCCACACAGG
EGR3	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	45	59	-	5.39655	9.19e-05	0.0418	GGCCACCCACACAGG
EGR3	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	48	62	-	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
EGR3	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	64	78	+	5.39655	9.19e-05	0.0418	GCGCGCCCGCGCGCG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	66	80	-	5.39655	9.19e-05	0.0418	TCACGCCTCCTCTCC
EGR3	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	74	88	-	5.39655	9.19e-05	0.0418	GGCCACCCACACAGG
EGR3	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	82	96	-	5.39655	9.19e-05	0.0418	AACCCCCCCCCCGCT
EGR3	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	82	96	-	5.39655	9.19e-05	0.0418	ACCCGGCCCCGCCCG
EGR3	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	94	108	-	5.39655	9.19e-05	0.0418	GGACGGCCACGCCCG
NRL	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	25	35	+	10.4808	9.19e-05	0.823	TGCGTGCTGAC
NRL	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	80	90	-	10.4808	9.19e-05	0.823	TGCGTGCTGAC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	16	27	+	10.7419	9.19e-05	0.281	GGGCCCACCCCC
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	16	27	+	10.7419	9.19e-05	0.281	GGGCCCACCCCC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	16	27	+	10.7419	9.19e-05	0.281	GGGCCCACCCCC
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	19	30	+	10.7419	9.19e-05	0.281	GCCACCACCCCT
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	33	44	-	10.7419	9.19e-05	0.281	GCGACCCCAAAA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	33	44	-	10.7419	9.19e-05	0.281	GCGACCCCAAAA
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	33	44	-	10.7419	9.19e-05	0.281	GCGACCCCAAAA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	62	73	-	10.7419	9.19e-05	0.281	CCGCCCCCCGTA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.3.0	79	90	-	10.7419	9.19e-05	0.281	GCGCCCACAGTC
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.1.0	79	90	-	10.7419	9.19e-05	0.281	GCGCCCACAGTC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:38156154..38156268,-__1432.1.0.0	79	90	-	10.7419	9.19e-05	0.281	GCGCCCACAGTC
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	79	90	-	10.7419	9.19e-05	0.281	TGAACCACCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	79	90	-	10.7419	9.19e-05	0.281	TGAACCACCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	79	90	-	10.7419	9.19e-05	0.281	TGAACCACCGCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	79	90	-	10.7419	9.19e-05	0.281	TGAACCACCGCA
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	79	90	-	10.7419	9.19e-05	0.281	TGAACCACCGCA
ZBTB7C	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	85	96	-	10.7419	9.19e-05	0.281	GCCACCACCCCT
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	87	98	-	10.7419	9.19e-05	0.281	GCGACCCCAAAA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	87	98	-	10.7419	9.19e-05	0.281	GCGACCCCAAAA
ZBTB7C	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	88	99	-	10.7419	9.19e-05	0.281	GGGCCCACCCCC
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	90	101	-	10.7419	9.19e-05	0.281	CCGACCCCCTAG
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr19:45228694..45228808,+__1778.1.0.0	90	99	-	10.9038	9.2e-05	0.508	AGACCACACA
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	13	22	+	10.9038	9.2e-05	0.508	CGACCACAAT
RUNX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	49	58	+	10.9038	9.2e-05	0.508	CGACCACAAT
HES7	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	17	28	-	2.18966	9.2e-05	0.219	ACGCACTTGCCA
HES7	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	87	98	+	2.18966	9.2e-05	0.219	ACGCACTTGCCA
E2F3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	14	31	+	1.67273	9.2e-05	1	AAAATTAGCCCCATGTTT
E2F3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	14	31	+	1.67273	9.2e-05	1	AAAATTAGCCCCATGTTT
E2F3	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	27	44	+	1.67273	9.2e-05	1	GAAAATGGCGCCGAAAGC
E2F3	WILDTYPE__Enhancer.flip.sense__chr17:9688051..9688165,+__1774.1.0.0	18	35	-	1.67273	9.2e-05	1	AAAATTAGCCCCATGTTT
E2F3	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	42	59	-	1.67273	9.2e-05	1	GAAAATGGCGCCGAAAGC
E2F3	FLIPPED__Enhancer.flip.antisense__chr17:9688051..9688165,-__2831.1.0.0	80	97	+	1.67273	9.2e-05	1	AAAATTAGCCCCATGTTT
E2F3	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	71	88	-	1.67273	9.2e-05	1	GAAAATGGCGCCGAAAGC
E2F3	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	84	101	-	1.67273	9.2e-05	1	AAAATTAGCCCCATGTTT
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	4	16	+	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	39	51	+	8.96552	9.2e-05	0.0578	CGCCGCGCGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	39	51	+	8.96552	9.2e-05	0.0578	CGCCGCGCGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	46	58	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	46	58	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	46	58	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	61	73	+	8.96552	9.2e-05	0.0578	GCCCCTCCAGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	52	64	-	8.96552	9.2e-05	0.0578	CGCCGCGCGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	52	64	-	8.96552	9.2e-05	0.0578	CGCCGCGCGGGGG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	52	64	-	8.96552	9.2e-05	0.0578	CGCCGCGCGGGGG
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	99	111	-	8.96552	9.2e-05	0.0578	GCCCTCCTGGGCA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	99	111	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	99	111	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	99	111	-	8.96552	9.2e-05	0.0578	AGCCCTTCCGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	26	38	+	9.54098	9.2e-05	0.0589	AGCCTAAAGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	91	103	+	9.54098	9.2e-05	0.0589	GGCCGTGGAGGCG
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	23	35	-	9.54098	9.2e-05	0.0589	GGCCGGAGGGGGA
FOSL2	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	18	28	+	9.85455	9.2e-05	0.27	AGATGGGTCAG
Myc	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.1.0	4	13	+	11.2727	9.2e-05	0.546	GCACGTGCCC
Myc	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:42343064..42343178,-__1608.1.0.0	4	13	+	11.2727	9.2e-05	0.546	GCACGTGCCC
NFIC::TLX1	FLIPPED__Enhancer.flip.antisense__chr8:145026251..145026365,+__2601.1.0.0	22	35	-	4.21429	9.2e-05	0.382	TGGCCGCCTGCCGG
NFIC::TLX1	WILDTYPE__Enhancer.flip.sense__chr8:145026251..145026365,-__2211.1.0.0	80	93	+	4.21429	9.2e-05	0.382	TGGCCGCCTGCCGG
CTCF	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	6	24	+	7.96721	9.2e-05	0.134	CGCCCTGCAGGCGCCGCTG
CTCF	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	91	109	-	7.96721	9.2e-05	0.134	CGCCCTGCAGGCGCCGCTG
ELK3	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	27	36	+	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	27	36	+	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	46	55	+	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	85	94	+	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	FLIPPED__Enhancer.flip.antisense__chr1:33446867..33446981,+__2560.1.0.0	97	106	+	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	9	18	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.1.0	9	18	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.0.0	9	18	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.0	9	18	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	60	69	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	66	75	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
ELK3	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	79	88	-	10.7241	9.2e-05	0.132	ACAGGAAGTC
Rarg(var.2)	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	35	51	-	-7.27273	9.2e-05	1	AGGGGCAGGCGGAGTCA
SP2	WILDTYPE__mrna.noflip.NA__chr15:79383078..79383192,-__1029.1.0.0	90	104	-	9.7069	9.2e-05	0.0187	GACCCTCCTCCGGTG
SP2	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	99	113	-	9.7069	9.2e-05	0.0187	GCTCCTCCCAGCTCC
SOX9	WILDTYPE__mrna.flip.sense__chr8:6565788..6565902,+__1228.1.0.0	46	54	-	10.5854	9.2e-05	1	CCATAGTTC
SOX9	FLIPPED__mrna.flip.antisense__chr8:6565788..6565902,-__2807.1.0.0	61	69	+	10.5854	9.2e-05	1	CCATAGTTC
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	1	10	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	1	10	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	13	22	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	13	22	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	51	60	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	51	60	-	10.4754	9.2e-05	0.389	CCCACCTGGC
ID4	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	60	69	+	10.4754	9.2e-05	0.389	CCCACCTGGC
EGR1	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	19	32	-	9.59615	9.2e-05	0.0308	CTCCCTCTCCCAGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	20	33	-	9.59615	9.2e-05	0.0308	CCGCCACTTCCGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	20	33	-	9.59615	9.2e-05	0.0308	CCGCCACTTCCGCT
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	20	33	-	9.59615	9.2e-05	0.0308	CCGCCACTTCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	20	33	-	9.59615	9.2e-05	0.0308	CCGCCACTTCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.0	22	35	-	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	22	35	-	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	22	35	-	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	22	35	-	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.0.0	49	62	+	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr17:5015167..5015281,+__367.1.1.0	49	62	+	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	FLIPPED__Antisense.flip.antisense__chr17:5015167..5015281,-__2657.1.0.0	53	66	-	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	80	93	+	9.59615	9.2e-05	0.0308	TCCTCGCCGCCGGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	68	81	-	9.59615	9.2e-05	0.0308	GCCCAGCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	68	81	-	9.59615	9.2e-05	0.0308	GCCCAGCCTCCTCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	68	81	-	9.59615	9.2e-05	0.0308	GCCCAGCCTCCTCT
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	68	81	-	9.59615	9.2e-05	0.0308	GCCCAGCCTCCTCT
EGR1	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	82	95	+	9.59615	9.2e-05	0.0308	CCGCCACTTCCGCT
EGR1	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	83	96	+	9.59615	9.2e-05	0.0308	CTCCCTCTCCCAGC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	84	97	-	9.59615	9.2e-05	0.0308	GCGACACCGCCGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	84	97	-	9.59615	9.2e-05	0.0308	GCGACACCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	84	97	-	9.59615	9.2e-05	0.0308	GCGACACCGCCGCT
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	84	97	-	9.59615	9.2e-05	0.0308	GCGACACCGCCGCT
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	84	97	-	9.59615	9.2e-05	0.0308	GCGACACCGCCGCT
EGR1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	93	106	-	9.59615	9.2e-05	0.0308	CCGCAGCCGCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	93	106	-	9.59615	9.2e-05	0.0308	CCGCAGCCGCCACC
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	14	23	+	10.7042	9.2e-05	0.176	GCCGGAACTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	14	23	+	10.7042	9.2e-05	0.176	GCCGGAACTG
ETV3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	14	23	+	10.7042	9.2e-05	0.176	GCCGGAACTG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	14	23	+	10.7042	9.2e-05	0.176	GCCGGAACTG
ETV3	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	85	94	+	10.7042	9.2e-05	0.176	GCCGGAACTG
CEBPG	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	58	67	+	9.85714	9.2e-05	0.9	CTTACACAAC
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.0.0	1	10	-	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:52542521..52542635,+__2022.1.1.0	1	10	-	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.1.0	13	22	-	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42928412..42928526,+__1668.1.0.0	13	22	-	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	60	69	+	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.1.0	51	60	-	11.6538	9.2e-05	0.404	CCCACCTGGC
TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:4524495..4524609,-__1509.1.0.0	51	60	-	11.6538	9.2e-05	0.404	CCCACCTGGC
REL	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	1	10	+	10.8384	9.2e-05	0.341	TGGGCCTTCC
REL	WILDTYPE__mrna.flip.sense__chr15:50647280..50647394,-__1165.1.0.0	32	41	+	10.8384	9.2e-05	0.341	GGGACTTTTC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	32	41	-	10.8384	9.2e-05	0.341	TGGGCCTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	32	41	-	10.8384	9.2e-05	0.341	TGGGCCTTCC
REL	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	74	83	+	10.8384	9.2e-05	0.341	TGGGCCTTCC
REL	FLIPPED__mrna.flip.antisense__chr15:50647280..50647394,+__2489.1.0.0	74	83	-	10.8384	9.2e-05	0.341	GGGACTTTTC
REL	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	105	114	-	10.8384	9.2e-05	0.341	TGGGCCTTCC
HSF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	19	31	-	6.06557	9.2e-05	1	ATCTAGCAGTTTC
HSF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	19	31	-	6.06557	9.2e-05	1	ATCTAGCAGTTTC
HSF1	WILDTYPE__Antisense.noflip.NA__chr3:156893031..156893145,+__564.1.0.0	54	66	+	6.06557	9.2e-05	1	TTCCTGAAACTTC
HOXC11	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	79	89	-	10.8448	9.21e-05	1	GGTCATTAATA
HOXC11	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	79	89	-	10.8448	9.21e-05	1	GGTCATTAATA
HOXC11	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	79	89	-	10.8448	9.21e-05	1	GGTCATTAATA
HOXC11	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	79	89	-	10.8448	9.21e-05	1	GGTCATTAATA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	13	24	+	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	13	24	+	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.1.0	16	27	-	10.7636	9.21e-05	0.0579	CGCCCGTGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059305..20059419,+__1517.1.0.0	16	27	-	10.7636	9.21e-05	0.0579	CGCCCGTGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	38	49	+	10.7636	9.21e-05	0.0579	TCCCCCCGGCGA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	44	55	+	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	60	71	-	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	60	71	-	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.0.0	64	75	-	10.7636	9.21e-05	0.0579	CGCCCGTGGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20059257..20059371,+__1516.1.1.0	64	75	-	10.7636	9.21e-05	0.0579	CGCCCGTGGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	91	102	-	10.7636	9.21e-05	0.0579	CGCCCGAGAGCA
Dlx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	47	56	+	9.76316	9.21e-05	1	GCCAATTACC
Dlx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	47	56	+	9.76316	9.21e-05	1	GCCAATTACC
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.0.0	65	79	+	7.28571	9.21e-05	0.125	CCCGCCCCCCTGGGC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:3539539..3539653,-__1245.1.2.0	65	79	+	7.28571	9.21e-05	0.125	CCCGCCCCCCTGGGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	42	55	-	7.34426	9.21e-05	0.189	GCCACCCCGCTGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	96	109	-	7.34426	9.21e-05	0.189	GCCACCCCGCTGCG
RUNX1	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	1	11	+	10.8448	9.21e-05	0.298	CTCTGTGGCCG
RUNX1	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	64	74	-	10.8448	9.21e-05	0.298	CGCTGTGGTGT
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	28	39	+	10.3026	9.21e-05	0.0394	GCCCCGTCCCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	28	39	+	10.3026	9.21e-05	0.0394	GCCCCGTCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	28	39	+	10.3026	9.21e-05	0.0394	GCCCCGTCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.0.0	28	39	+	10.3026	9.21e-05	0.0394	GCCCCGTCCCCC
SP8	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	33	44	+	10.3026	9.21e-05	0.0394	CCAACGCCTACC
TBX20	WILDTYPE__Lincrna.noflip.NA__chr2:105467876..105467990,-__389.1.0.0	78	88	+	10.0909	9.21e-05	1	TCAGTGTGAAG
NRF1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	47	57	+	9.23636	9.21e-05	0.0246	AAGCATGCCCA
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	58	68	-	9.23636	9.21e-05	0.0246	AAGCATGCCCA
NRF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	58	68	-	9.23636	9.21e-05	0.0246	AAGCATGCCCA
NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	72	82	+	4.73469	9.21e-05	0.405	TATGACTCAGC
NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	72	82	+	4.73469	9.21e-05	0.405	TATGACTCAGC
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350132..39350246,-__2190.1.1.0	10	27	+	4.0367	9.21e-05	0.632	TGAAAACGAGAGGATTGG
IRF2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	37	54	-	4.0367	9.21e-05	0.632	TGAAAACGAGAGGATTGG
USF1	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	36	46	-	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	61	71	-	10.3469	9.21e-05	0.237	GTCACGTGGTT
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	90	100	-	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	15	25	+	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	15	25	+	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	15	25	+	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	15	25	+	10.3469	9.21e-05	0.237	GCCACCTGGCC
USF1	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	69	79	+	10.3469	9.21e-05	0.237	GCCACCTGGCC
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	6	23	+	-16.0395	9.21e-05	0.0556	GAGGGGGGAGGAGGAGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr3:94656976..94657090,+__594.1.0.0	9	26	-	-16.0395	9.21e-05	0.0556	GGAGGAAGAAAAGGAGGC
Foxo1	WILDTYPE__mrna.noflip.NA__chr11:118436602..118436716,-__1351.1.0.0	89	99	-	11	9.21e-05	0.902	GCCTGTTGTCA
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr6:107235224..107235338,-__726.1.0.0	13	24	+	10.3065	9.21e-05	1	ATAGGCTAATGA
TEAD1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	8	17	-	10.9194	9.21e-05	1	AGCATTCCTA
TEAD1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	8	17	-	10.9194	9.21e-05	1	AGCATTCCTA
POU4F2	WILDTYPE__Lincrna.noflip.NA__chr2:145780693..145780807,+__401.1.0.0	61	76	-	6.32727	9.22e-05	1	CAGCATTCTTAATGTC
ETV4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	11.1034	9.22e-05	0.133	ACCGGAAAGG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.1	13	23	+	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.2.0	13	23	+	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.1.0	13	23	+	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616235..45616349,-__2254.1.0.0	13	23	+	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	18	28	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	18	28	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	59	69	-	9.91379	9.22e-05	0.0264	GCCACGCCACT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	59	69	-	9.91379	9.22e-05	0.0264	GCCACGCCACT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	59	69	-	9.91379	9.22e-05	0.0264	GCCACGCCACT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	74	84	-	9.91379	9.22e-05	0.0264	GCCACGCCACT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.1	101	111	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.0.0	101	111	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.2.0	101	111	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
KLF16	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr21:45616226..45616340,+__1961.1.1.0	101	111	-	9.91379	9.22e-05	0.0264	TCCACACCTCC
OLIG3	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	33	42	-	10.9655	9.22e-05	1	AAAATATGTT
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.0.0	41	54	-	4.61224	9.22e-05	0.0782	GGGCTCTAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256203..24256317,-__2089.1.1.0	41	54	-	4.61224	9.22e-05	0.0782	GGGCTCTAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	86	99	+	4.61224	9.22e-05	0.0782	GAGGCGCTCTGAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	86	99	+	4.61224	9.22e-05	0.0782	GAGGCGCTCTGAGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	86	99	+	4.61224	9.22e-05	0.0782	GAGGCGCTCTGAGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	86	99	+	4.61224	9.22e-05	0.0782	GAGGCGCTCTGAGG
TFAP2B	WILDTYPE__mrna.noflip.NA__chr7:24323729..24323843,+__1369.1.0.0	14	25	+	10.7273	9.22e-05	0.0949	TGCCCGAGGCCC
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	93	104	+	10.7273	9.22e-05	0.0949	ACCCCGGGGCCA
IRF8	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	23	36	+	-4.03636	9.22e-05	0.788	GAGAAAGCGGAAGA
IRF8	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	79	92	-	-4.03636	9.22e-05	0.788	GAGAAAGCGGAAGA
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	5	17	-	7.27273	9.22e-05	0.265	CAGGGCTCCCCCC
NFKB2	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	101	113	+	7.27273	9.22e-05	0.265	CAGGGCTCCCCCC
Twist2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	17	26	-	11.3443	9.22e-05	1	AGCATATGTT
Twist2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	17	26	-	11.3443	9.22e-05	1	AGCATATGTT
Twist2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	17	26	-	11.3443	9.22e-05	1	AGCATATGTT
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	30	45	-	-11.0769	9.22e-05	0.33	TGCCCCCCCACCTCGC
CREB3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	28	41	+	8.98571	9.22e-05	0.312	ACGTGACGTCATGA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	28	41	+	8.98571	9.22e-05	0.312	ACGTGACGTCATGA
CREB3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	28	41	+	8.98571	9.22e-05	0.312	ACGTGACGTCATGA
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	13	28	+	9.67273	9.22e-05	0.0416	CCCCGCCCCCGGTCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	22	37	+	9.67273	9.22e-05	0.0416	ACACGCACGCGCACGC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	22	37	+	9.67273	9.22e-05	0.0416	ACACGCACGCGCACGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	22	37	+	9.67273	9.22e-05	0.0416	ACACGCACGCGCACGC
EGR4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	22	37	+	9.67273	9.22e-05	0.0416	ACACGCACGCGCACGC
EGR4	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	24	39	-	9.67273	9.22e-05	0.0416	TGGCCCCCACCCACAT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25416252..25416366,-__2170.1.0.0	34	49	-	9.67273	9.22e-05	0.0416	CTATGCCCACGGAGGT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	54	69	+	9.67273	9.22e-05	0.0416	GCCCGCGCACACACTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	54	69	+	9.67273	9.22e-05	0.0416	GCCCGCGCACACACTC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	54	69	+	9.67273	9.22e-05	0.0416	GCCCGCGCACACACTC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	54	69	+	9.67273	9.22e-05	0.0416	GCCCGCGCACACACTC
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:25416252..25416366,+__2579.1.0.0	66	81	+	9.67273	9.22e-05	0.0416	CTATGCCCACGGAGGT
EGR4	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	76	91	+	9.67273	9.22e-05	0.0416	TGGCCCCCACCCACAT
EGR4	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	78	93	-	9.67273	9.22e-05	0.0416	ACACGCACGCGCACGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.0.0	81	96	-	9.67273	9.22e-05	0.0416	GTCCGCCCACAGAAAC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:41888791..41888905,-__1101.1.1.0	81	96	-	9.67273	9.22e-05	0.0416	GTCCGCCCACAGAAAC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	7	20	-	6.62857	9.23e-05	0.247	GAGGGACGTCACTG
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	91	104	+	6.62857	9.23e-05	0.247	GAGGGACGTCACTG
Mitf	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	28	37	+	10.4286	9.23e-05	0.283	AGTCACATGG
Mitf	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	34	43	-	10.4286	9.23e-05	0.283	AGTCACATGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	72	81	+	10.4286	9.23e-05	0.283	AGTCACATGG
Mitf	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	68	77	-	10.4286	9.23e-05	0.283	AGTCACATGG
Mitf	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	78	87	-	10.4286	9.23e-05	0.283	AGTCACATGG
TCF7L2	WILDTYPE__Lincrna.flip.sense__chrX:73164097..73164211,+__945.1.0.0	48	61	-	10.5091	9.23e-05	1	GCGGATGAAAGCCG
TCF7L2	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	43	56	+	10.5091	9.23e-05	1	TCACTTCAAAGTTA
TCF7L2	FLIPPED__Lincrna.flip.antisense__chrX:73164097..73164211,-__2737.1.0.0	54	67	+	10.5091	9.23e-05	1	GCGGATGAAAGCCG
E2F6	WILDTYPE__Lincrna.noflip.NA__chr1:173991605..173991719,+__36.1.0.0	37	47	+	10.2759	9.23e-05	0.0864	CGGAGGGAGAC
BATF3	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	9	22	-	-0.378788	9.23e-05	0.265	TGTTGACGTCGTCC
BATF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	70	83	-	-0.378788	9.23e-05	0.265	AGATGAAGGCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	70	83	-	-0.378788	9.23e-05	0.265	AGATGAAGGCAGCG
BATF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	70	83	-	-0.378788	9.23e-05	0.265	AGATGAAGGCAGCG
BATF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	70	83	-	-0.378788	9.23e-05	0.265	AGATGAAGGCAGCG
BATF3	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	93	106	+	-0.378788	9.23e-05	0.265	TGTTGACGTCGTCC
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	-	10.8298	9.23e-05	0.279	TGTGACTCAGA
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	-	10.8298	9.23e-05	0.279	TGTGACTCAGA
FOS	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	-	10.8298	9.23e-05	0.279	TGTGACTCAGA
FOS	WILDTYPE__Lincrna.noflip.NA__chr2:208104288..208104402,+__419.1.0.0	57	67	-	10.8298	9.23e-05	0.279	AATGACTCAGC
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	+	10.8298	9.23e-05	0.279	TGTGACTCAGA
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	+	10.8298	9.23e-05	0.279	TGTGACTCAGA
FOS	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	+	10.8298	9.23e-05	0.279	TGTGACTCAGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr14:81685673..81685787,-__2284.1.0.0	4	12	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	27	35	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	29	37	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	39	47	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	39	47	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	57	65	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	78	86	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	78	86	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	95	103	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	95	103	+	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	12	20	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	16	24	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	46	54	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	46	54	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:13080588..13080702,+__219.1.1.0	51	59	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	75	83	-	9.82895	9.23e-05	0.215	CTGCCAGGA
THAP1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	89	97	-	9.82895	9.23e-05	0.215	CTGCCAGGA
ELK1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	8	17	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	14	23	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	14	23	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	14	23	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	37	46	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	48	57	+	9.57447	9.23e-05	0.109	AGCGGAAGCA
ELK1	FLIPPED__mrna.flip.antisense__chr11:77850629..77850743,+__2482.1.0.0	41	50	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	62	71	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	62	71	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE__mrna.flip.sense__chr11:77850629..77850743,-__1153.1.0.0	65	74	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE__Antisense.noflip.NA__chr8:103251542..103251656,+__824.1.0.0	59	68	-	9.57447	9.23e-05	0.109	AGCGGAAGCA
ELK1	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	69	78	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	92	101	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	94	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	94	-	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	98	107	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	98	107	+	9.57447	9.23e-05	0.109	CCCGGATGTG
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	98	107	+	9.57447	9.23e-05	0.109	CCCGGATGTG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	34	48	+	8.62857	9.23e-05	0.122	GGGGAGGAGGGGGCG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr20:25731754..25731868,+__467.1.0.0	41	55	+	8.62857	9.23e-05	0.122	GCGGGGCTGAGGGGA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	67	81	-	8.62857	9.23e-05	0.122	GGGGAGGAGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	67	81	-	8.62857	9.23e-05	0.122	GGGGAGGAGGGGGCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr12:58026427..58026541,-__1005.1.0.0	77	91	-	8.62857	9.23e-05	0.122	GGGGGACAGAGTGGA
RFX2	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	86	101	-	5.01429	9.23e-05	0.474	GGTTGCCGCGACTACA
RFX2	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	14	29	+	5.01429	9.23e-05	0.474	GGTTGCCGCGACTACA
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	73	85	-	10.1639	9.23e-05	0.359	AACTCTGGCACCT
SMAD2::SMAD3::SMAD4	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	30	42	+	10.1639	9.23e-05	0.359	AACTCTGGCACCT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr3:14989837..14989951,-__553.1.0.0	36	48	+	10.1639	9.23e-05	0.359	GCGCCTCGCACCC
Klf12	FLIPPED__mrna.flip.antisense__chr7:1199731..1199845,+__2466.1.0.0	5	19	+	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	55	69	-	7.40984	9.23e-05	0.0731	CGCCCCGCCCCGACC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	55	69	-	7.40984	9.23e-05	0.0731	CGCCCCGCCCCGACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	55	69	-	7.40984	9.23e-05	0.0731	CGCCCCGCCCCGACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.0	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.3.0	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.1.0	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.0.0	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	96	110	-	7.40984	9.23e-05	0.0731	AGGCACACCCACACC
SP3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	8	18	+	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	51	61	+	10.5772	9.23e-05	0.0278	CCCACTCCCTT
SP3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	62	72	+	10.5772	9.23e-05	0.0278	CCCCCTCCTAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.1.0	77	87	+	10.5772	9.23e-05	0.0278	TCCACTCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:11688472..11688586,-__1534.1.2.1	77	87	+	10.5772	9.23e-05	0.0278	TCCACTCCCTC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	95	105	+	10.5772	9.23e-05	0.0278	CCCACTCCCTT
SP3	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	1	11	-	10.5772	9.23e-05	0.0278	CCCACTCCCTT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	10	20	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	10	20	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	10	20	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	10	20	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	10	20	-	10.5772	9.23e-05	0.0278	CCCACTCCCTT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:203155796..203155910,-__1426.1.0.0	29	39	-	10.5772	9.23e-05	0.0278	TCCACTCCCCG
SP3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	43	53	-	10.5772	9.23e-05	0.0278	CCCCCTCCTAC
SP3	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	54	64	-	10.5772	9.23e-05	0.0278	CCCACTCCCTT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.0.0	60	70	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	60	70	-	10.5772	9.23e-05	0.0278	CCCACCCCCTC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	88	98	-	10.5772	9.23e-05	0.0278	TCCACTCCCCG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	88	98	-	10.5772	9.23e-05	0.0278	TCCACTCCCCG
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	88	98	-	10.5772	9.23e-05	0.0278	TCCACTCCCCG
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	88	98	-	10.5772	9.23e-05	0.0278	TCCACTCCCCG
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	92	102	-	7.62069	9.23e-05	1	TCAGGGTCACT
ESRRB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	92	102	-	7.62069	9.23e-05	1	TCAGGGTCACT
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	92	102	-	7.62069	9.23e-05	1	TCAGGGTCACT
ESRRB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	92	102	-	7.62069	9.23e-05	1	TCAGGGTCACT
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	92	102	-	7.62069	9.23e-05	1	TCAGGGTCACT
EHF	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	55	66	+	9.54098	9.23e-05	0.146	TGGGCGGAAGTG
ETS1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	23	+	10.8448	9.23e-05	0.12	ACCGGAAGGT
MSC	WILDTYPE__Antisense.noflip.NA__chr17:1619469..1619583,-__353.1.0.0	36	45	+	9.60976	9.23e-05	0.577	GCCAGCTGAT
MSC	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	54	63	+	9.60976	9.23e-05	0.577	GCCAGCTGAT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.0.0	18	29	+	10.8261	9.23e-05	1	AAATATTTTCTT
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:62070715..62070829,+__1863.1.2.0	18	29	+	10.8261	9.23e-05	1	AAATATTTTCTT
Nr5a2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.0.0	9	23	-	9.48276	9.23e-05	0.506	CGCTCCAAGGCCGCG
Nr5a2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:29698438..29698552,+__121.1.2.0	9	23	-	9.48276	9.23e-05	0.506	CGCTCCAAGGCCGCG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:29698426..29698540,+__120.1.0.0	21	35	-	9.48276	9.23e-05	0.506	CGCTCCAAGGCCGCG
Nr5a2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:29698406..29698520,+__119.1.0.0	41	55	-	9.48276	9.23e-05	0.506	CGCTCCAAGGCCGCG
Nr5a2	FLIPPED__Antisense.flip.antisense__chr10:29698406..29698520,-__2626.1.0.0	60	74	+	9.48276	9.23e-05	0.506	CGCTCCAAGGCCGCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	86	97	-	1.34483	9.24e-05	0.298	TGGCGCGCGCCC
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	86	97	-	1.34483	9.24e-05	0.298	TGGCGCGCGCCC
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	86	97	-	1.34483	9.24e-05	0.298	TGGCGCGCGCCC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	86	97	-	1.34483	9.24e-05	0.298	TGGCGCGCGCCC
HOXA13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	12	21	+	10.9583	9.24e-05	1	CCAATAAAGG
HOXA13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	12	21	+	10.9583	9.24e-05	1	CCAATAAAGG
HOXA13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	50	59	-	10.9583	9.24e-05	1	CCAATAAAGG
HOXA13	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	50	59	-	10.9583	9.24e-05	1	CCAATAAAGG
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	3	12	-	10.0642	9.24e-05	0.0553	CCCCCCCACT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	3	12	-	10.0642	9.24e-05	0.0553	CCCCCCCACT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.3.0	73	82	+	10.0642	9.24e-05	0.0553	CCCCCCCACT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.0.0	73	82	+	10.0642	9.24e-05	0.0553	CCCCCCCACT
LHX6	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	11.0909	9.24e-05	1	TCTAATTAGT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	10	24	+	8.84848	9.24e-05	0.355	TCTATTTCCGTTTCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	10	24	+	8.84848	9.24e-05	0.355	TCTATTTCCGTTTCC
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.1	49	63	+	8.84848	9.24e-05	0.355	TTGCTTCCGGTTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.2.0	49	63	+	8.84848	9.24e-05	0.355	TTGCTTCCGGTTTTT
STAT1::STAT2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.1.0	49	63	+	8.84848	9.24e-05	0.355	TTGCTTCCGGTTTTT
STAT1::STAT2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:144363811..144363925,-__844.1.0.0	49	63	+	8.84848	9.24e-05	0.355	TTGCTTCCGGTTTTT
STAT1::STAT2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	47	61	-	8.84848	9.24e-05	0.355	TCTATTTCCGTTTCC
STAT1::STAT2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	47	61	-	8.84848	9.24e-05	0.355	TCTATTTCCGTTTCC
STAT1::STAT2	FLIPPED__Lincrna.flip.antisense__chr8:144363811..144363925,+__2434.1.0.0	52	66	-	8.84848	9.24e-05	0.355	TTGCTTCCGGTTTTT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	30	40	+	10.3455	9.24e-05	0.0718	AGCCTCCAGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	30	40	+	10.3455	9.24e-05	0.0718	AGCCTCCAGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	32	42	-	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	32	42	-	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	34	44	-	10.3455	9.24e-05	0.0718	TGCCCAGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	59	69	+	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	59	69	+	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.0.0	61	71	+	10.3455	9.24e-05	0.0718	CGCCTAAAGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:41513910..41514024,-__752.1.1.0	61	71	+	10.3455	9.24e-05	0.0718	CGCCTAAAGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	64	74	-	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	64	74	-	10.3455	9.24e-05	0.0718	TCCCCGAGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:33217265..33217379,+__749.1.0.0	74	84	+	10.3455	9.24e-05	0.0718	AGCCTCAGGAA
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	81	91	-	10.3455	9.24e-05	0.0718	AGCCTCCAGCA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	94	104	-	10.3455	9.24e-05	0.0718	AGCCTCCAGCA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr4:79567068..79567182,+__645.1.0.0	95	105	-	10.3455	9.24e-05	0.0718	AGCCTCAGGAA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	98	108	-	10.3455	9.24e-05	0.0718	AGCCTCCAGCA
Rxra	CONTROL_FLIPPED__control.flip.antisense__chr17:33571488..33571603,-__2895.1.0.0	17	30	-	1.9878	9.24e-05	0.528	GAGGTGAGAGTTCC
Rxra	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:33571488..33571603,+__2316.1.0.0	86	99	+	1.9878	9.24e-05	0.528	GAGGTGAGAGTTCC
Rxra	CONTROL_SNP_INDIV__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.0	86	99	+	1.9878	9.24e-05	0.528	GAGGTGAGAGTTCC
Rxra	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr17:33571488..33571603,+__2316.1.1.1	86	99	+	1.9878	9.24e-05	0.528	GAGGTGAGAGTTCC
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.1.0	58	73	+	0.12069	9.24e-05	0.471	TTCCCAGCGTCCCCTC
ZNF143	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633193..43633307,+__1936.1.0.0	58	73	+	0.12069	9.24e-05	0.471	TTCCCAGCGTCCCCTC
ZNF143	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.0.0	48	63	-	0.12069	9.24e-05	0.471	TTCCCAGCGTCCCCTC
ZNF143	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:43633199..43633313,-__2229.1.1.0	48	63	-	0.12069	9.24e-05	0.471	TTCCCAGCGTCCCCTC
PKNOX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	103	114	+	1.93443	9.24e-05	0.683	TGACAGGCGTGG
PKNOX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	103	114	+	1.93443	9.24e-05	0.683	TGACAGGCGTGG
FLI1	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	8	17	+	10.5319	9.24e-05	0.141	AGCGGAAATC
FLI1	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	3	12	-	10.5319	9.24e-05	0.141	GCCGGAAACT
FLI1	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	14	23	-	10.5319	9.24e-05	0.141	AGCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.1.0	66	75	+	10.5319	9.24e-05	0.141	AGCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:99771457..99771571,+__1064.1.0.0	66	75	+	10.5319	9.24e-05	0.141	AGCGGAAACG
FLI1	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	103	112	+	10.5319	9.24e-05	0.141	GCCGGAAACT
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	98	107	-	10.5319	9.24e-05	0.141	AGCGGAAATC
FLI1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	98	107	-	10.5319	9.24e-05	0.141	AGCGGAAATC
MAFG	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	86	106	+	9.17347	9.24e-05	1	ATGTTCCTGACTCGGCACCCG
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	86	106	+	9.17347	9.24e-05	1	ATGTTCCTGACTCGGCACCCG
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	86	106	+	9.17347	9.24e-05	1	ATGTTCCTGACTCGGCACCCG
MAFG	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	9	29	-	9.17347	9.24e-05	1	ATGTTCCTGACTCGGCACCCG
LEF1	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	44	58	+	7.85484	9.24e-05	1	AAGCAACAAAGCGAA
RXRG	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	67	80	+	0.531915	9.24e-05	0.515	GATGTTAAAAGTCA
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	4	12	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	4	12	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	4	12	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	11	19	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	11	19	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE__Lincrna.flip.sense__chr10:6622301..6622415,+__134.1.0.0	22	30	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.0	50	58	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.1.1	50	58	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:131486644..131486758,+__893.1.0.0	50	58	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	54	62	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	54	62	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	78	86	+	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	9	17	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	19	27	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	19	27	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	29	37	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	29	37	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	36	44	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	FLIPPED__Lincrna.flip.antisense__chr10:6622301..6622415,-__2628.1.0.0	85	93	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	96	104	-	10.8846	9.24e-05	0.516	GTGCCCGCC
Hic1	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	103	111	-	10.8846	9.24e-05	0.516	GTGCCCGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	26	36	+	9.21818	9.24e-05	0.0246	GCGGCGGTGCG
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	2	14	-	10.9592	9.24e-05	0.202	CACACCTGCTTTT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	2	14	-	10.9592	9.24e-05	0.202	CACACCTGCTTTT
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	17	27	+	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	17	27	+	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	59	69	+	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	70	80	-	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
TFAP2A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	70	80	-	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	88	98	-	10.8364	9.24e-05	0.0568	GGCCCGCGGCA
EBF1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	19	32	+	8.31148	9.24e-05	0.368	GTCCCCTCGGGGCC
EBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	96	-	8.31148	9.24e-05	0.368	GTCCCCTCGGGGCC
EBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	96	-	8.31148	9.24e-05	0.368	GTCCCCTCGGGGCC
EGR3	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	2	16	+	5.37931	9.24e-05	0.0418	CCCCTCCCGCGCGGT
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	25	-	5.37931	9.24e-05	0.0418	CCCCGCCCCCGGGGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	25	-	5.37931	9.24e-05	0.0418	CCCCGCCCCCGGGGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	29	43	-	5.37931	9.24e-05	0.0418	GGGCGCCCCCTCACG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	29	43	-	5.37931	9.24e-05	0.0418	GGGCGCCCCCTCACG
EGR3	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	47	61	+	5.37931	9.24e-05	0.0418	CCCCTCCCGCGCGGT
EGR3	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	54	68	-	5.37931	9.24e-05	0.0418	CCCCTCCCGCGCGGT
EGR3	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	99	113	-	5.37931	9.24e-05	0.0418	CCCCTCCCGCGCGGT
Pou5f1::Sox2	WILDTYPE__Enhancer.noflip.NA__chr6:86114550..86114664,-__2274.1.0.0	61	75	-	9.87903	9.24e-05	1	CTATGCTATGCAAAT
Rarb(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.1	34	50	+	-3.77273	9.24e-05	0.861	GGGTGACCCGGGGTGCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	34	50	+	-3.77273	9.24e-05	0.861	GGGTGACCCGGGGTGCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.1.0	34	50	+	-3.77273	9.24e-05	0.861	GGGTGACCCGGGGTGCA
E2F1	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	1	12	+	10.3934	9.25e-05	0.452	CTGGCCGCCAAA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.1.0	38	48	+	10.0345	9.25e-05	0.0519	CGGCGGCAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr20:18547998..18548112,+__457.1.0.0	38	48	+	10.0345	9.25e-05	0.0519	CGGCGGCAGGG
E2F4	FLIPPED__Lincrna.flip.antisense__chr20:18547998..18548112,-__2674.1.0.0	67	77	-	10.0345	9.25e-05	0.0519	CGGCGGCAGGG
Stat4	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	58	71	-	10.6379	9.25e-05	0.369	CTGCTTGGAAGGAG
Stat4	WILDTYPE__mrna.noflip.NA__chr17:27045150..27045264,-__1264.1.0.0	62	75	-	10.6379	9.25e-05	0.369	ATGCCAGGAACCAG
JUND(var.2)	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	15	29	+	9.70213	9.25e-05	0.372	CGTCATGACGTAAGC
JUND(var.2)	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	38	52	+	9.70213	9.25e-05	0.372	CGTCATGACGTAAGC
JUND(var.2)	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	63	77	-	9.70213	9.25e-05	0.372	CGTCATGACGTAAGC
JUND(var.2)	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	86	100	-	9.70213	9.25e-05	0.372	CGTCATGACGTAAGC
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	7	24	+	-16.0526	9.25e-05	0.0556	GGGAGGAGGGGACGGGGT
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	98	108	+	9.56364	9.25e-05	0.275	AGCCGGAAACA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	22	34	+	8.94828	9.25e-05	0.0578	CGCCCACAAGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	21	33	-	8.94828	9.25e-05	0.0578	ACCCTTGCGGGGG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	21	33	-	8.94828	9.25e-05	0.0578	ACCCTTGCGGGGG
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239518..52239632,+__1780.1.0.0	38	50	+	8.94828	9.25e-05	0.0578	TCCCATGAGGGGA
TFAP2C(var.3)	WILDTYPE__Enhancer.noflip.NA__chr19:52239514..52239628,-__2073.1.0.0	61	73	-	8.94828	9.25e-05	0.0578	TCCCATGAGGGGA
TFAP2C(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	99	111	+	8.94828	9.25e-05	0.0578	TGCCCAGGAGGGC
ERF	WILDTYPE__Enhancer.noflip.NA__chr2:162197385..162197499,+__1783.1.0.0	63	72	-	10.4571	9.25e-05	0.13	ATCGGAAGGG
ERF	WILDTYPE__Enhancer.noflip.NA__chr2:162197429..162197543,-__2076.1.0.0	87	96	+	10.4571	9.25e-05	0.13	ATCGGAAGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	73	85	+	9.52459	9.25e-05	0.0589	TGCCACTGCGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	73	85	+	9.52459	9.25e-05	0.0589	TGCCACTGCGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	100	112	+	9.52459	9.25e-05	0.0589	GCCCAGGAGGGCA
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	91	103	-	9.52459	9.25e-05	0.0589	CCCCGGCGGGGGA
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	91	103	-	8.92857	9.25e-05	0.769	TTTCCAGATGAGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	12	32	-	9	9.25e-05	0.0233	GAGGGGGAGGGGGAGGGGAGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr11:68780679..68780793,-__1331.1.0.0	14	34	-	9	9.25e-05	0.0233	AGGAGGGGGAGGGGGAGGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	24	44	-	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	24	44	-	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	24	44	-	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	24	44	-	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	32	52	-	9	9.25e-05	0.0233	AGGGAACGAAGGAGCGGAGTG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	6	26	+	9	9.25e-05	0.0233	GGGGGGGCAGAGGGAAGTGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	21	41	+	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	21	41	+	9	9.25e-05	0.0233	GGGGCGGGGCGGGGCGGGGGC
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	94	114	+	9	9.25e-05	0.0233	TAAGGAGGGGCGAAAGGACAT
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	94	114	+	9	9.25e-05	0.0233	TAAGGAGGGGCGAAAGGACAT
Arntl	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	2	11	+	10.8033	9.25e-05	0.297	TGTCACGCGA
Arntl	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	41	50	-	10.8033	9.25e-05	0.297	AAGCACGTGT
Arntl	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	41	50	-	10.8033	9.25e-05	0.297	AAGCACGTGT
Arntl	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	92	101	-	10.8033	9.25e-05	0.297	TGTCACGCGA
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	9.36207	9.25e-05	0.249	GTCACGTGGC
Srebf1(var.2)	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	9.36207	9.25e-05	0.249	GTCACGTGGC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	47	67	+	8.16129	9.25e-05	0.19	TTTCCCTTTCGGATTCCCGAC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	47	67	+	8.16129	9.25e-05	0.19	TTTCCCTTTCGGATTCCCGAC
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	81	101	+	8.16129	9.25e-05	0.19	TTTCCCTTTCGGATTCCCGAC
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	81	101	+	8.16129	9.25e-05	0.19	TTTCCCTTTCGGATTCCCGAC
SP4	WILDTYPE__mrna.noflip.NA__chr17:1619750..1619864,+__1037.1.0.0	19	35	+	2.63636	9.25e-05	0.0353	GTGGCCCAGCCCTCCGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.0.0	69	85	+	2.63636	9.25e-05	0.0353	GGTGCTCCGCCCTCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80816276..80816390,+__1673.1.1.0	69	85	+	2.63636	9.25e-05	0.0353	GGTGCTCCGCCCTCCCC
ELF1	FLIPPED__Antisense.flip.antisense__chr7:54826976..54827090,-__2721.1.0.0	58	69	+	8.09091	9.25e-05	0.136	TTCCAGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.0	46	57	-	8.09091	9.25e-05	0.136	TTCCAGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.0.0	46	57	-	8.09091	9.25e-05	0.136	TTCCAGGAAGCG
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr7:54826976..54827090,+__809.1.1.1	46	57	-	8.09091	9.25e-05	0.136	TTCCAGGAAGCG
ELF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	54	65	-	8.09091	9.25e-05	0.136	ATCCCGGATGCC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	78	88	+	10.6182	9.25e-05	0.0786	TGGCTTCCGCG
PAX7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	48	57	-	8.69091	9.25e-05	1	CAATTAATTA
PAX7	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	48	57	-	8.69091	9.25e-05	1	CAATTAATTA
PAX7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	13	+	8.69091	9.25e-05	1	CAATTAATTA
PAX7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	13	+	8.69091	9.25e-05	1	CAATTAATTA
PAX7	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	58	67	+	8.69091	9.25e-05	1	CAATTAATTA
Creb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	16	27	+	7.81818	9.25e-05	0.283	ACTGATGTCACA
Creb5	WILDTYPE__Enhancer.noflip.NA__chr9:114823840..114823954,+__1825.1.0.0	28	39	-	7.81818	9.25e-05	0.283	TGTGATGTCACT
Tcf21	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	27	40	+	5.26316	9.25e-05	0.572	GGAACATCTGGAGG
Tcf21	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:9183551..9183665,+__1729.1.0.0	44	57	-	5.26316	9.25e-05	0.572	TCACCAGCTGGATG
Tcf21	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	75	88	-	5.26316	9.25e-05	0.572	GGAACATCTGGAGG
FOXA1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	18	32	+	10.7755	9.25e-05	1	CCCGTGTTGGCTCTT
FOXA1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	18	32	+	10.7755	9.25e-05	1	CCCGTGTTGGCTCTT
FOXA1	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	83	97	-	10.7755	9.25e-05	1	CCCGTGTTGGCTCTT
RUNX3	WILDTYPE__Lincrna.noflip.NA__chr20:23338727..23338841,-__463.1.0.0	102	111	-	10.8846	9.26e-05	0.508	CAACCGCAGG
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	79	93	-	10.1731	9.26e-05	0.38	CAGGGTTAAAGTCCG
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	79	93	-	10.1731	9.26e-05	0.38	CAGGGTTAAAGTCCG
HNF4G	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	79	93	-	10.1731	9.26e-05	0.38	CAGGGTTAAAGTCCG
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	79	93	-	10.1731	9.26e-05	0.38	CAGGGTTAAAGTCCG
ETV1	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	32	41	-	10.9818	9.26e-05	0.133	ACCGGAAAGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	4	17	-	4.60204	9.26e-05	0.0782	GTGGGCGAGGAGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	88	101	-	4.60204	9.26e-05	0.0782	GGGTGGAAACGGGG
PLAG1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	88	101	-	4.60204	9.26e-05	0.0782	GGGTGGAAACGGGG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr10:74034651..74034765,+__137.1.0.0	15	28	+	4.60204	9.26e-05	0.0782	GCGGCCTGCGGGGG
MLXIPL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	10.9697	9.26e-05	0.297	GCCACGTGAC
MLXIPL	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	10.9697	9.26e-05	0.297	GCCACGTGAC
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	79	92	+	10.4808	9.26e-05	0.247	CAATCATGAGTCAG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr6:3403549..3403663,-__2108.1.0.0	24	31	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	17	24	-	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	21	28	-	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.0.0	21	28	-	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	22	29	-	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.0.0	44	51	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051083..25051197,-__2226.1.1.0	44	51	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	57	64	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	57	64	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr14:61939085..61939199,+__1761.1.0.0	50	57	-	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	62	69	+	11.2787	9.26e-05	0.317	ACCACATG
Mycn	WILDTYPE__Enhancer.noflip.NA__chr14:61939117..61939231,-__2054.1.0.0	90	97	+	11.2787	9.26e-05	0.317	ACCACATG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	35	49	+	7.27143	9.26e-05	0.126	ACCTCCCCCCGGCGA
TEF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.1	10	21	+	9.90909	9.26e-05	1	AATTGCGTAACT
TEF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.1.0	10	21	+	9.90909	9.26e-05	1	AATTGCGTAACT
TEF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.2.0	10	21	+	9.90909	9.26e-05	1	AATTGCGTAACT
TEF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:50978212..50978326,+__1898.1.0.0	10	21	+	9.90909	9.26e-05	1	AATTGCGTAACT
TEF	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	5	16	-	9.90909	9.26e-05	1	AATTGCGTAACT
TEF	FLIPPED__Enhancer.flip.antisense__chr22:50978212..50978326,-__2873.1.0.0	94	105	-	9.90909	9.26e-05	1	AATTGCGTAACT
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.0.0	24	34	+	10.9592	9.26e-05	0.862	ATTTCATCATT
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	24	34	+	10.9592	9.26e-05	0.862	ATTTCATCATT
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr15:70052681..70052795,+__1764.1.0.0	56	66	+	10.9592	9.26e-05	0.862	ATTGCAACAGA
CEBPA	WILDTYPE__Enhancer.noflip.NA__chr15:70052677..70052791,-__2057.1.0.0	45	55	-	10.9592	9.26e-05	0.862	ATTGCAACAGA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	68	78	-	9.60656	9.26e-05	0.188	TACCGGAAGGC
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	68	78	-	9.60656	9.26e-05	0.188	TACCGGAAGGC
ETV2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	68	78	-	9.60656	9.26e-05	0.188	TACCGGAAGGC
XBP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	14	27	-	9.05769	9.26e-05	0.529	GGCGCCGCGTCACT
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	14	27	-	9.05769	9.26e-05	0.529	GGCGCCGCGTCACT
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	46	59	+	9.05769	9.26e-05	0.529	TCCGCCACGTGACC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	46	59	+	9.05769	9.26e-05	0.529	TCCGCCACGTGACC
Alx4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	4	20	-	10.4805	9.26e-05	1	GCTCCTAATTAGACAGT
RORA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	99	112	+	6.16854	9.26e-05	1	GAAATGTAGGTGAT
RFX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	54	69	+	8.54545	9.26e-05	0.429	AGTTTCCACAGAAACT
RFX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	54	69	+	8.54545	9.26e-05	0.429	AGTTTCCACAGAAACT
RFX3	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	94	109	-	8.54545	9.26e-05	0.429	CGGGGCCATGGCGACA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	9	23	-	10.3514	9.26e-05	0.19	GAAGGGCAGAGGCTT
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	9	23	-	10.3514	9.26e-05	0.19	GAAGGGCAGAGGCTT
SP8	FLIPPED__Enhancer.flip.antisense__chr5:172199513..172199627,+__2596.1.0.0	50	61	-	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.1	54	65	+	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
SP8	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.1.0	54	65	+	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:172199513..172199627,-__2203.1.0.0	54	65	+	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	69	80	+	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	69	80	+	10.2895	9.26e-05	0.0395	TCCCCTCCCCCA
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	12	25	+	10.0152	9.26e-05	0.0687	CTAGTCCGGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	12	25	+	10.0152	9.26e-05	0.0687	CTAGTCCGGGCCTT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	7	18	+	10.7143	9.26e-05	0.0876	CGGCTTGAGGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	7	18	+	10.7143	9.26e-05	0.0876	CGGCTTGAGGCA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	16	27	+	10.7143	9.26e-05	0.0876	TGGCCCGCGGCA
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	66	77	-	10.7143	9.26e-05	0.0876	AGCCCGAGGCCT
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	101	112	-	10.7143	9.26e-05	0.0876	AGCCGCCGGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	101	112	-	10.7143	9.26e-05	0.0876	AGCCGCCGGGCT
PAX5	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	30	48	+	9.95161	9.26e-05	0.155	GCGCGCAGCCAGGGAGGAA
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	50	68	+	9.95161	9.26e-05	0.155	CTGCGCAGGAGCGCGGGGC
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	50	68	+	9.95161	9.26e-05	0.155	CTGCGCAGGAGCGCGGGGC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	19	33	+	9.68966	9.26e-05	0.0189	GCCCCACCCAGCAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	6	20	-	9.68966	9.26e-05	0.0189	CCCCTTCCTCCTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	6	20	-	9.68966	9.26e-05	0.0189	CCCCTTCCTCCTTCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	6	20	-	9.68966	9.26e-05	0.0189	CCCCTTCCTCCTTCC
SP2	WILDTYPE__Enhancer.noflip.NA__chr9:137264790..137264904,+__1826.1.0.0	27	41	-	9.68966	9.26e-05	0.0189	GCCCCACCCAGCAGG
Klf4	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	7	16	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	21	-	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	30	39	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE__mrna.flip.sense__chr5:83680206..83680320,-__1208.1.0.0	32	41	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE__Antisense.flip.sense__chr5:83680252..83680366,+__709.1.0.0	28	37	-	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	52	61	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	63	72	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	63	72	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	64	73	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	64	73	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	64	73	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	72	81	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	72	81	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	FLIPPED__Antisense.flip.antisense__chr5:83680252..83680366,-__2707.1.0.0	78	87	+	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	FLIPPED__mrna.flip.antisense__chr5:83680206..83680320,+__2515.1.0.0	74	83	-	10.1122	9.26e-05	0.0298	GGGGCGGAGT
Klf4	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	108	-	10.1122	9.26e-05	0.0298	GGGGCGGAGT
NFKB1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	17	29	+	0.938776	9.26e-05	0.265	GGGGAAATCCCGG
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.0.0	67	78	-	1.32759	9.26e-05	0.298	GGTCACGTGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:160143111..160143225,-__1548.1.1.0	67	78	-	1.32759	9.26e-05	0.298	GGTCACGTGCCG
CLOCK	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	31	40	+	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	31	40	+	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	48	-	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	54	-	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	54	-	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	54	-	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	61	70	+	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	67	76	+	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	67	76	+	10.6818	9.27e-05	0.585	ATCACGTGTC
CLOCK	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	67	76	+	10.6818	9.27e-05	0.585	ATCACGTGTC
GLIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	23	36	-	7.32787	9.27e-05	0.189	CGCCCCCCAGGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	23	36	-	7.32787	9.27e-05	0.189	CGCCCCCCAGGCCG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	42	55	+	7.32787	9.27e-05	0.189	CGCCCCCCAGGCCG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	20	30	+	9.83636	9.27e-05	0.27	TAGTGACTAAG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr12:7592636..7592750,-__2150.1.0.0	43	60	+	8.36585	9.27e-05	0.225	AAGCCCGCCATTGGTCGG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr12:7592620..7592734,+__1857.1.0.0	71	88	-	8.36585	9.27e-05	0.225	AAGCCCGCCATTGGTCGG
TCF3	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	16	25	-	11.5962	9.27e-05	0.404	GCCACCTGCT
TCF3	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	65	74	+	11.5962	9.27e-05	0.404	GCCACCTGCT
TCF3	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	93	102	+	11.5962	9.27e-05	0.404	GCCACCTGCT
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:4987114..4987228,-__1401.1.1.0	8	17	-	10.7049	9.27e-05	0.726	TGTGCGGGCC
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	41	51	+	10.1364	9.27e-05	0.0588	TACCCCTCCCT
Klf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	41	51	+	10.1364	9.27e-05	0.0588	TACCCCTCCCT
Klf1	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	64	74	-	10.1364	9.27e-05	0.0588	TACCCCTCCCT
MLX	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	26	35	+	9.27143	9.27e-05	0.338	GTAACGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	80	89	-	9.27143	9.27e-05	0.338	GTAACGTGAC
Foxa2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	70	81	+	10.72	9.27e-05	1	TGTGGACTTTGC
Foxa2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	70	81	+	10.72	9.27e-05	1	TGTGGACTTTGC
Foxa2	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	83	94	+	10.72	9.27e-05	1	TGTGGACTTTGC
RAX	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	56	65	+	10.8305	9.27e-05	1	GGCAATTAAA
MZF1(var.2)	WILDTYPE__mrna.noflip.NA__chr5:179921370..179921484,+__1378.1.0.0	56	65	+	10.8687	9.27e-05	0.185	CGAGGGGGGC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	71	80	-	10.8687	9.27e-05	0.185	TGATGGGGGA
MEF2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	6	20	-	10.3729	9.27e-05	1	ATCACAAGAATAGCA
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	41	52	-	8.07273	9.27e-05	0.136	GCTCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	41	52	-	8.07273	9.27e-05	0.136	GCTCCGGAAGCC
RREB1	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	6	25	-	2.66972	9.27e-05	0.0755	ACCCGCCCCGCCACACTCCC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	74	93	-	2.66972	9.27e-05	0.0755	CACAAACACACCCAGAGACA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	74	93	-	2.66972	9.27e-05	0.0755	CACAAACACACCCAGAGACA
HOXB13	WILDTYPE__mrna.noflip.NA__chr16:8814506..8814620,+__1035.1.0.0	3	12	-	10.8727	9.27e-05	1	CCCATAAAGC
HOXB13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	15	24	-	10.8727	9.27e-05	1	CCCATAAAGC
HOXB13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	15	24	-	10.8727	9.27e-05	1	CCCATAAAGC
Hmx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	73	89	-	10.3293	9.27e-05	1	GAGAGCAATTGAGGAAG
NR1H2::RXRA	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	16	32	-	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
NR1H2::RXRA	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	83	99	+	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	83	99	+	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	83	99	+	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
NR1H2::RXRA	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	83	99	+	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
NR1H2::RXRA	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	83	99	+	-6.64045	9.27e-05	1	ACAGGCCAATGTTCACC
JUND	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	100	110	+	9.2766	9.27e-05	0.272	CGTGACTCAGG
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344034..18344148,+__1458.1.1.0	29	39	-	9.2766	9.27e-05	0.272	CGTGACTCAGG
JUND	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	30	40	-	9.2766	9.27e-05	0.272	CGTGACTCAGG
JUND	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18344014..18344128,+__1457.1.1.0	49	59	-	9.2766	9.27e-05	0.272	CGTGACTCAGG
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	91	107	-	9.08163	9.27e-05	0.405	GGGTGGGAGAGGGGGGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	91	107	-	9.08163	9.27e-05	0.405	GGGTGGGAGAGGGGGGA
PBX1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	25	36	-	10.2755	9.28e-05	1	GGACCAATCATA
PBX1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	79	90	+	10.2755	9.28e-05	1	GGACCAATCATA
RFX4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.0.0	3	18	+	9.24242	9.28e-05	0.407	CGTAGCCTTGCCACCG
RFX4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:25604604..25604718,+__464.1.1.0	3	18	+	9.24242	9.28e-05	0.407	CGTAGCCTTGCCACCG
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr4:53525526..53525640,-__2697.1.0.0	21	31	+	10.6923	9.28e-05	0.0758	AGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	31	41	+	10.6923	9.28e-05	0.0758	CGCCCTCGGCA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:47800362..47800476,+__1841.1.0.0	26	36	-	10.6923	9.28e-05	0.0758	AGCCTCAGGGC
TFAP2C(var.2)	FLIPPED__Enhancer.flip.antisense__chr14:105948394..105948508,-__2856.1.0.0	28	38	-	10.6923	9.28e-05	0.0758	TGCCCACGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	40	50	+	10.6923	9.28e-05	0.0758	AGCCCACGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	40	50	+	10.6923	9.28e-05	0.0758	AGCCCACGGCT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	32	42	-	10.6923	9.28e-05	0.0758	TCCCGGAGGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	32	42	-	10.6923	9.28e-05	0.0758	TCCCGGAGGCG
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:112631947..112632061,-__107.1.0.0	34	44	-	10.6923	9.28e-05	0.0758	AGCCTGGAGCG
TFAP2C(var.2)	WILDTYPE__Enhancer.flip.sense__chr14:105948394..105948508,+__1862.1.0.0	77	87	+	10.6923	9.28e-05	0.0758	TGCCCACGGCA
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	91	101	+	10.6923	9.28e-05	0.0758	AGCCCACGGCT
TFAP2C(var.2)	WILDTYPE__Lincrna.flip.sense__chr4:53525526..53525640,+__633.1.0.0	84	94	-	10.6923	9.28e-05	0.0758	AGCCTGGAGCG
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	83	100	+	-16.0658	9.28e-05	0.0556	GCTAGGGAGGAGGGAGGC
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	15	32	-	-16.0658	9.28e-05	0.0556	GCTAGGGAGGAGGGAGGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	37	54	-	-16.0658	9.28e-05	0.0556	GGAAAAAGGCCGTGAAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	37	54	-	-16.0658	9.28e-05	0.0556	GGAAAAAGGCCGTGAAGG
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	82	95	-	7.9697	9.28e-05	0.481	TAGGTCCAGGGTGA
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr17:68310793..68310907,-__2172.1.0.0	7	19	+	5.67213	9.28e-05	1	AGCCAACAGCTGG
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	57	-	3.82979	9.28e-05	1	CGGGACTCCGCGTGCCC
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	57	-	3.82979	9.28e-05	1	CGGGACTCCGCGTGCCC
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	86	99	-	7.74242	9.28e-05	0.359	CTGCCACATCCCAG
PROP1	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	4	14	+	10.0149	9.28e-05	1	TTATTCAATTA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	12	24	+	9.04918	9.28e-05	0.0652	CCCCCTCGAGGGC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	22	34	-	9.04918	9.28e-05	0.0652	GGCCTTGTGGGCG
PRDM1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	52	66	+	9.72727	9.28e-05	0.346	TAAAAAGGAAAGAAA
PRDM1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	39	53	-	9.72727	9.28e-05	0.346	AGCGGGTGAAAGCGC
PRDM1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.0.0	39	53	-	9.72727	9.28e-05	0.346	AGCGGGTGAAAGCGC
EGR1	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	47	+	9.57692	9.28e-05	0.031	CGCCCGCCCCTTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.0.0	42	55	+	9.57692	9.28e-05	0.031	GTCCCGCCCTCGTG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62104849..62104963,+__1297.1.1.0	42	55	+	9.57692	9.28e-05	0.031	GTCCCGCCCTCGTG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.0.0	29	42	-	9.57692	9.28e-05	0.031	GGCCCGCCTCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775698..34775812,+__1589.1.1.0	29	42	-	9.57692	9.28e-05	0.031	GGCCCGCCTCTTCC
EGR1	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	68	81	-	9.57692	9.28e-05	0.031	CGCCCGCCCCTTGA
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.0.0	71	84	-	9.57692	9.28e-05	0.031	GGCCCGCCTCTTCC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34775656..34775770,+__1588.1.1.0	71	84	-	9.57692	9.28e-05	0.031	GGCCCGCCTCTTCC
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940439..41940553,-__1607.1.0.0	22	32	-	10.6034	9.28e-05	0.616	AAACCTCTGTC
CENPB	WILDTYPE__Enhancer.flip.sense__chr9:137283313..137283427,+__1923.1.0.0	42	56	-	9.80769	9.28e-05	0.985	CCCGCCTGCCCCACA
CENPB	FLIPPED__Enhancer.flip.antisense__chr9:137283313..137283427,-__2887.1.0.0	59	73	+	9.80769	9.28e-05	0.985	CCCGCCTGCCCCACA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	42	55	-	4.59184	9.28e-05	0.0782	GAGGGCAAGGAGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	42	55	-	4.59184	9.28e-05	0.0782	GAGGGCAAGGAGGA
ELF3	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	5	17	-	7.37931	9.28e-05	0.193	CCCACGGAAGTTG
ELF3	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	98	110	+	7.37931	9.28e-05	0.193	CCCACGGAAGTTG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	36	50	+	8.61429	9.28e-05	0.122	GTGGGGCGGGGGTGG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	29	39	+	10.4286	9.29e-05	0.262	CAATGACTAAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	29	39	+	10.4286	9.29e-05	0.262	CAATGACTAAT
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	87	97	-	10.4286	9.29e-05	0.262	CAATGACTAAT
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	87	97	-	10.4286	9.29e-05	0.262	CAATGACTAAT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	35	47	+	8.93103	9.29e-05	0.0578	AGCCTGGTGGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	101	113	+	8.93103	9.29e-05	0.0578	AGCCCGCTAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	101	113	+	8.93103	9.29e-05	0.0578	AGCCCGCTAGGCG
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	101	113	+	8.93103	9.29e-05	0.0578	AGCCCGCTAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	101	113	+	8.93103	9.29e-05	0.0578	AGCCCGCTAGGCG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	10	22	+	10.6327	9.29e-05	0.533	CCCAGGTCACCTG
NR2F1	WILDTYPE__Lincrna.noflip.NA__chr9:13446423..13446537,+__900.1.0.0	46	58	+	10.6327	9.29e-05	0.533	GAGGGGTCATGCA
Hoxc9	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	91	103	+	10.4762	9.29e-05	1	CGACATCAATCTC
Hoxc9	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	91	103	+	10.4762	9.29e-05	1	CGACATCAATCTC
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.2.1	67	77	-	10.9828	9.29e-05	0.902	TGTTGTTTCCC
Foxo1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:25103361..25103475,-__1495.1.1.0	67	77	-	10.9828	9.29e-05	0.902	TGTTGTTTCCC
SPIC	FLIPPED__mrna.flip.antisense__chr11:65647228..65647342,-__2816.1.0.0	99	112	+	10.3239	9.29e-05	0.306	ACGAAGGGGAAGAC
SPIC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.0	3	16	-	10.3239	9.29e-05	0.306	ACGAAGGGGAAGAC
SPIC	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.2.1	3	16	-	10.3239	9.29e-05	0.306	ACGAAGGGGAAGAC
SPIC	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.1.0	3	16	-	10.3239	9.29e-05	0.306	ACGAAGGGGAAGAC
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:65647228..65647342,+__1475.1.0.0	3	16	-	10.3239	9.29e-05	0.306	ACGAAGGGGAAGAC
HEY1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	+	10.8182	9.29e-05	0.173	ACCACGTGAC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	+	10.8182	9.29e-05	0.173	ACCACGTGAC
KLF16	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	11	21	+	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	4	14	-	9.89655	9.29e-05	0.0265	CCCCCGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	7	17	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	7	17	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	20	30	+	9.89655	9.29e-05	0.0265	ACCACGCCCAG
KLF16	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	12	22	-	9.89655	9.29e-05	0.0265	CCCCCGCCTCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	22	32	+	9.89655	9.29e-05	0.0265	CCCCCGCCTCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	22	32	+	9.89655	9.29e-05	0.0265	CCCCCGCCTCT
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	27	37	-	9.89655	9.29e-05	0.0265	ACCACGCCCAG
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	27	37	-	9.89655	9.29e-05	0.0265	ACCACGCCCAG
KLF16	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	39	49	+	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	31	41	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	31	41	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	66	76	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	66	76	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
KLF16	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	94	104	-	9.89655	9.29e-05	0.0265	AGCCCGCCCCT
SP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	20	36	+	2.61818	9.29e-05	0.0354	ACCACCCCCCCCCCCCC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	20	36	+	2.61818	9.29e-05	0.0354	ACCACCCCCCCCCCCCC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	46	62	+	2.61818	9.29e-05	0.0354	CGCGCCCCGCCTCTCGG
TFEB	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	4	13	-	10.8462	9.29e-05	0.211	GCCACGAGAC
TFEB	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	64	73	+	10.8462	9.29e-05	0.211	GCCACGAGAC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	25	39	+	5.36207	9.29e-05	0.0418	CCCCACCCGCGCCTG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	25	39	+	5.36207	9.29e-05	0.0418	CCCCACCCGCGCCTG
EGR3	WILDTYPE__Antisense.noflip.NA__chr8:127570041..127570155,+__834.1.0.0	31	45	+	5.36207	9.29e-05	0.0418	CCCCTCCCACCCTCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	32	46	+	5.36207	9.29e-05	0.0418	ACCCACCCACACTTC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	32	46	+	5.36207	9.29e-05	0.0418	ACCCACCCACACTTC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	47	61	+	5.36207	9.29e-05	0.0418	CAGCTCCCCCGCGCG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	47	61	+	5.36207	9.29e-05	0.0418	CAGCTCCCCCGCGCG
TCF7L2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	15	28	+	10.4909	9.3e-05	1	AGATATGAAAGGAG
TCF7L2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	15	28	+	10.4909	9.3e-05	1	AGATATGAAAGGAG
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	3	14	+	10.7455	9.3e-05	0.0579	TGGCCCGAGGCT
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr14:107252946..107253060,+__1760.1.0.0	15	26	+	10.7455	9.3e-05	0.0579	CGGCCCCAGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151574513..151574627,+__788.1.0.0	82	93	+	10.7455	9.3e-05	0.0579	ACCCCTGCGGCG
KLF14	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	23	36	-	7.93103	9.3e-05	0.0412	CACCCCGCCCTCAC
KLF14	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	37	50	-	7.93103	9.3e-05	0.0412	CACCCCGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	61	74	+	7.93103	9.3e-05	0.0412	GGACGCGCCCTCGT
KLF14	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	65	78	+	7.93103	9.3e-05	0.0412	CACCCCGCCCCGCC
KLF14	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	56	69	-	7.93103	9.3e-05	0.0412	GGACGCGCCCTCGT
Rarb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	31	46	-	-5.65517	9.3e-05	1	CAGGGTCAGTGAGTCA
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	31	46	-	-5.65517	9.3e-05	1	CAGGGTCAGTGAGTCA
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	3	14	-	10.7258	9.3e-05	0.281	AAAACCACCAAC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr9:113761711..113761825,-__1120.1.0.0	15	26	-	10.7258	9.3e-05	0.281	GCTACCACAGAC
ZBTB7C	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	18	29	-	10.7258	9.3e-05	0.281	AAAACCACCAAC
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	68	79	-	10.7258	9.3e-05	0.281	AAAACCACCAAC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	8	22	-	9.72727	9.3e-05	0.114	TCCGCCCCGCCGCCC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	8	22	-	9.72727	9.3e-05	0.114	TCCGCCCCGCCGCCC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	8	22	-	9.72727	9.3e-05	0.114	TCCGCCCCGCCGCCC
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:33446867..33446981,-__2132.1.2.1	98	111	+	1.63636	9.3e-05	0.272	AAGTAGCGGAAGGA
HSF1	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	7	19	-	6.03279	9.3e-05	1	TTCTAGTGCGTTC
HSF1	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	92	104	+	6.03279	9.3e-05	1	TTCTAGTGCGTTC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	19	31	-	9.5082	9.3e-05	0.0589	ACCCCTCCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	19	31	-	9.5082	9.3e-05	0.0589	ACCCCTCCAGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	19	31	-	9.5082	9.3e-05	0.0589	ACCCCTCCAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	19	31	-	9.5082	9.3e-05	0.0589	ACCCCTCCAGGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	10.1923	9.3e-05	0.306	GGCACGTGTT
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	10.1923	9.3e-05	0.306	GGCACGTGTT
Myog	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	23	33	+	10.9184	9.3e-05	0.188	CGCAGCTGAAA
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	81	91	+	10.9184	9.3e-05	0.188	AGCAGGTGGTA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	104	114	-	10.9184	9.3e-05	0.188	CGCAGCTGAAA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	104	114	-	10.9184	9.3e-05	0.188	CGCAGCTGAAA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	104	114	-	10.9184	9.3e-05	0.188	CGCAGCTGAAA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	104	114	-	10.9184	9.3e-05	0.188	CGCAGCTGAAA
Myog	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	104	114	-	10.9184	9.3e-05	0.188	CGCAGCTGAAA
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	4	16	+	0.918367	9.3e-05	0.265	GGGGAAATCCCTA
NFKB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	4	16	-	0.918367	9.3e-05	0.265	GGGGAAATCCCTA
NFKB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.1.0	4	16	-	0.918367	9.3e-05	0.265	GGGGAAATCCCTA
RUNX1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	35	45	+	10.8276	9.3e-05	0.298	AGCTGTGGCCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	14	34	+	8.14516	9.31e-05	0.19	TTTCTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	14	34	+	8.14516	9.31e-05	0.19	TTTCTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	14	34	-	8.14516	9.31e-05	0.19	TGTGGGTTTCCCTTTATGTCC
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	14	34	-	8.14516	9.31e-05	0.19	TGTGGGTTTCCCTTTATGTCC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	28	48	-	8.14516	9.31e-05	0.19	AGAAGGTTTCGTTTTGATCTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	55	75	+	8.14516	9.31e-05	0.19	TTTCTTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	93	113	-	8.14516	9.31e-05	0.19	AGAAGGTTTCGTTTTGATCTT
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	3	17	+	7.25714	9.31e-05	0.126	GCACCCCTGGGGTGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	3	17	+	7.25714	9.31e-05	0.126	GCACCCCTGGGGTGG
ZIC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	26	40	-	7.25714	9.31e-05	0.126	GCACCCCTGGGGTGG
ZIC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	26	40	-	7.25714	9.31e-05	0.126	GCACCCCTGGGGTGG
FOSL2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	46	56	-	9.78182	9.31e-05	0.27	CGCTGACTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	46	56	-	9.78182	9.31e-05	0.27	CGCTGACTCAC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	77	89	-	10.1475	9.31e-05	0.359	GTGTCTGCCCGCT
Rarg	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	7	22	-	-3.65306	9.31e-05	0.877	AAGCTGAAGAGGCCAA
Rarg	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	7	22	-	-3.65306	9.31e-05	0.877	AAGCTGAAGAGGCCAA
Rarg	WILDTYPE__Enhancer.flip.sense__chr5:25910755..25910869,+__1911.1.0.0	39	54	+	-3.65306	9.31e-05	0.877	AAGCTGAAGAGGCCAA
Rarg	FLIPPED__Enhancer.flip.antisense__chr5:25910755..25910869,-__2881.1.0.0	61	76	-	-3.65306	9.31e-05	0.877	AAGCTGAAGAGGCCAA
Rarg	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	93	108	+	-3.65306	9.31e-05	0.877	AAGCTGAAGAGGCCAA
MSC	WILDTYPE__mrna.noflip.NA__chr19:50381546..50381660,-__1301.1.0.0	87	96	+	9.57317	9.31e-05	0.577	TACAGCTGCC
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	22	30	-	8.82759	9.31e-05	0.383	ATGTCTCAC
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	22	30	-	8.82759	9.31e-05	0.383	ATGTCTCAC
Crx	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	58	68	-	10.8103	9.31e-05	1	AGTCGGATTAG
PROX1	WILDTYPE__Enhancer.noflip.NA__chr6:158136770..158136884,-__2106.1.0.0	19	30	+	7.94545	9.31e-05	1	CAAGATTTCTTC
ELF4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	39	50	+	8.29508	9.31e-05	0.128	CCGCCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	39	50	+	8.29508	9.31e-05	0.128	CCGCCGGAAGCG
ELF4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	39	50	+	8.29508	9.31e-05	0.128	CCGCCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	39	50	+	8.29508	9.31e-05	0.128	CCGCCGGAAGCG
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	48	59	+	8.29508	9.31e-05	0.128	GGAGCGGAAGTG
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	48	59	+	8.29508	9.31e-05	0.128	GGAGCGGAAGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	65	76	-	8.29508	9.31e-05	0.128	CCGCCGGAAGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	22	+	9.03279	9.31e-05	0.0652	GGCCTTCCCGGCA
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	40	52	-	9.03279	9.31e-05	0.0652	TCCCTGCGGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	71	83	+	9.03279	9.31e-05	0.0652	GGCCTCCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.1.0	85	97	-	9.03279	9.31e-05	0.0652	AGCCTCGCCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:100009953..100010067,+__599.1.0.0	85	97	-	9.03279	9.31e-05	0.0652	AGCCTCGCCGGCG
RARA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	5	22	-	-11.1515	9.31e-05	1	AAGCTGAAGAGGCCAAGG
RARA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	5	22	-	-11.1515	9.31e-05	1	AAGCTGAAGAGGCCAAGG
RARA	WILDTYPE__Enhancer.flip.sense__chr5:25910755..25910869,+__1911.1.0.0	39	56	+	-11.1515	9.31e-05	1	AAGCTGAAGAGGCCAAGG
RARA	FLIPPED__Enhancer.flip.antisense__chr5:25910755..25910869,-__2881.1.0.0	59	76	-	-11.1515	9.31e-05	1	AAGCTGAAGAGGCCAAGG
RARA	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	93	110	+	-11.1515	9.31e-05	1	AAGCTGAAGAGGCCAAGG
EGR4	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	6	21	-	9.65455	9.31e-05	0.0418	TCCCGCCCCTGCTTGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	34	49	-	9.65455	9.31e-05	0.0418	GCCCTCCCGCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	34	49	-	9.65455	9.31e-05	0.0418	GCCCTCCCGCGCCTCC
EGR4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	60	75	+	9.65455	9.31e-05	0.0418	CGCCGCCCTCGGGTTT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	45	60	-	9.65455	9.31e-05	0.0418	AGACGCCCGCCGACTT
EGR4	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	94	109	+	9.65455	9.31e-05	0.0418	TCCCGCCCCTGCTTGC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	56	66	+	9.2	9.31e-05	0.0248	GCCCTGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	56	66	+	9.2	9.31e-05	0.0248	GCCCTGGCGCG
NRF1	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	64	74	-	9.2	9.31e-05	0.0248	CAGCCTGCCCG
ZIC1	WILDTYPE__Enhancer.flip.sense__chr10:94351415..94351529,+__1849.1.0.0	6	19	-	5.34043	9.31e-05	0.106	TCCGGCCTGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	6	19	-	5.34043	9.31e-05	0.106	GCCAGCCTACTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	6	19	-	5.34043	9.31e-05	0.106	GCCAGCCTACTGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	6	19	-	5.34043	9.31e-05	0.106	GCCAGCCTACTGCG
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.1	45	58	+	5.34043	9.31e-05	0.106	GCGCGCCTGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.1.0	45	58	+	5.34043	9.31e-05	0.106	GCGCGCCTGCTGCG
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	45	58	+	5.34043	9.31e-05	0.106	GCGCGCCTGCTGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.0.0	45	58	+	5.34043	9.31e-05	0.106	GCGCGCCTGCTGCG
ZIC1	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	61	74	-	5.34043	9.31e-05	0.106	GCGCGCCTGCTGCG
ZIC1	FLIPPED__Enhancer.flip.antisense__chr10:94351415..94351529,-__2848.1.0.0	96	109	+	5.34043	9.31e-05	0.106	TCCGGCCTGCTGCG
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	42	56	-	10.3423	9.31e-05	0.19	GGAGGGCAAGGAGGA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	42	56	-	10.3423	9.31e-05	0.19	GGAGGGCAAGGAGGA
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	18	35	-	-16.0789	9.31e-05	0.0556	AGAAGGGAGGGCTGCAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	58	75	-	-16.0789	9.31e-05	0.0556	GAGGGGAGAGCAGGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	58	75	-	-16.0789	9.31e-05	0.0556	GAGGGGAGAGCAGGGAGG
Klf4	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	23	32	-	10.0714	9.31e-05	0.03	GGGGTGAGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	98	107	-	10.0714	9.31e-05	0.03	GGGGTGAGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	98	107	-	10.0714	9.31e-05	0.03	GGGGTGAGGC
ID4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	1	10	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	1	10	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	6	15	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	-	10.4426	9.31e-05	0.389	CGCAGCTGTC
ID4	WILDTYPE__Enhancer.noflip.NA__chr17:37024597..37024711,-__2062.1.0.0	41	50	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	80	89	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	88	97	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	96	105	-	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	10	19	+	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	+	10.4426	9.31e-05	0.389	CGCAGCTGTC
ID4	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	+	10.4426	9.31e-05	0.389	CGCAGCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	100	109	+	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	100	109	+	10.4426	9.31e-05	0.389	CGCAGCTGCC
ID4	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	105	114	+	10.4426	9.31e-05	0.389	CGCAGCTGCC
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	43	56	+	2.63636	9.31e-05	0.393	TGCCTCCCGCTTTG
GLI2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	38	49	-	9.7069	9.31e-05	0.33	TGGACCACGCGG
GLI2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	38	49	-	9.7069	9.31e-05	0.33	TGGACCACGCGG
GLI2	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	42	53	-	9.7069	9.31e-05	0.33	GCGTCCACCCCG
GLI2	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	53	64	-	9.7069	9.31e-05	0.33	TGGACCACGCGG
GLI2	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	55	66	-	9.7069	9.31e-05	0.33	GCGGCCACTCGG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	70	81	-	9.7069	9.31e-05	0.33	CCGCCCACCGTG
GLI2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	14	25	+	9.7069	9.31e-05	0.33	TGGACCACGCGG
GLI2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	14	25	+	9.7069	9.31e-05	0.33	TGGACCACGCGG
GLI2	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	49	60	+	9.7069	9.31e-05	0.33	GCGGCCACTCGG
GLI2	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	66	77	+	9.7069	9.31e-05	0.33	TGGACCACGCGG
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	101	112	+	10.0455	9.32e-05	0.111	GGGCGTCCGGTG
RARA::RXRA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	49	65	+	9.07143	9.32e-05	0.405	GGGTCACCCGCACCCCA
Zfx	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	19	32	-	10	9.32e-05	0.0687	TCAGACCCGGCCTC
EGR2	WILDTYPE__Lincrna.flip.sense__chr20:21106611..21106725,+__462.1.0.0	3	13	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	7	17	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	7	17	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	7	17	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	7	17	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	FLIPPED__Enhancer.flip.antisense__chr9:140024186..140024300,+__2604.1.0.0	10	20	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	1	11	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	1	11	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.1.0	18	28	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.1	18	28	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.0.0	18	28	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024178..140024292,+__1924.1.2.0	18	28	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	21	31	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr6:72129833..72129947,-__755.1.0.0	22	32	+	8.7931	9.32e-05	0.0862	GCGCCTCCGCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr4:6675592..6675706,-__638.1.0.0	23	33	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	14	24	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	14	24	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	14	24	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	14	24	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr20:21106583..21106697,+__461.1.0.0	31	41	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	33	43	+	8.7931	9.32e-05	0.0862	CCGCCCGCTCA
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	33	43	+	8.7931	9.32e-05	0.0862	CCGCCCGCTCA
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	34	44	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	34	44	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr8:92082342..92082456,-__880.1.0.0	25	35	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	26	36	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	26	36	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	38	48	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	38	48	+	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	38	48	+	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	39	49	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	39	49	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	31	41	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.1	31	41	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	31	41	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	31	41	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.2.0	31	41	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.1	34	44	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.1.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.3.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.2.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:5390106..5390220,+__1525.1.0.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.1	34	44	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.0.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.1.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.2.0	34	44	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE__Antisense.flip.sense__chr1:9747587..9747701,-__101.1.0.0	51	61	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	42	52	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	48	58	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	48	58	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	51	61	-	8.7931	9.32e-05	0.0862	ACGGCCACGTG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	51	61	-	8.7931	9.32e-05	0.0862	ACGGCCACGTG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	52	62	-	8.7931	9.32e-05	0.0862	GCGCCCGCGCT
EGR2	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	63	73	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__Antisense.flip.antisense__chr1:9747587..9747701,+__2338.1.0.0	54	64	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	67	77	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	FLIPPED__Antisense.flip.antisense__chr5:131705526..131705640,+__2404.1.0.0	71	81	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	74	84	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	74	84	+	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	74	84	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	66	76	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE__Enhancer.noflip.NA__chr12:52542390..52542504,-__2315.1.0.0	87	97	+	8.7931	9.32e-05	0.0862	CCGCCCGCTCA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	91	101	+	8.7931	9.32e-05	0.0862	CCGCCCGCTCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	91	101	+	8.7931	9.32e-05	0.0862	CCGCCCGCTCA
EGR2	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	84	94	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
EGR2	FLIPPED__Enhancer.flip.antisense__chr9:140024178..140024292,-__2888.1.0.0	87	97	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	104	114	+	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.0.0	95	105	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.1.0	95	105	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.0	95	105	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr9:140024186..140024300,-__2217.1.2.1	95	105	-	8.7931	9.32e-05	0.0862	GCGCGCACGCG
EGR2	FLIPPED__Lincrna.flip.antisense__chr20:21106611..21106725,-__2675.1.0.0	102	112	-	8.7931	9.32e-05	0.0862	CCGCCCCCACG
PLAG1	FLIPPED__mrna.flip.antisense__chr4:4543705..4543819,+__2509.1.0.0	78	91	-	4.58163	9.32e-05	0.0782	GGAGGCGTGTGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.1.0	24	37	+	4.58163	9.32e-05	0.0782	GGAGGCGTGTGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:4543705..4543819,-__1200.1.0.0	24	37	+	4.58163	9.32e-05	0.0782	GGAGGCGTGTGGGG
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	64	73	-	10.6885	9.32e-05	0.726	GATGGGGGCG
ELF1	WILDTYPE__mrna.noflip.NA__chr8:59572109..59572223,-__1118.1.0.0	42	53	+	8.05455	9.32e-05	0.136	TATCCGGAAGAA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	19	-	10.3091	9.32e-05	0.0718	CCCCCGGGGCA
TFAP2B(var.2)	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	30	40	+	10.3091	9.32e-05	0.0718	CCCCCGGGGCA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	42	-	10.3091	9.32e-05	0.0718	CCCCCGGGGCA
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr5:135309144..135309258,+__2595.1.0.0	36	46	-	10.3091	9.32e-05	0.0718	GGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.0.0	56	66	-	10.3091	9.32e-05	0.0718	GGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:27835331..27835445,-__1657.1.1.0	56	66	-	10.3091	9.32e-05	0.0718	GGCCCCGGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr5:135309144..135309258,-__2202.1.0.0	69	79	+	10.3091	9.32e-05	0.0718	GGCCCCGGGCT
EHF	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	37	48	-	9.52459	9.32e-05	0.147	TACCAGGAAGGT
EHF	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	47	58	-	9.52459	9.32e-05	0.147	GAACCGGAAGCC
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.0.0	48	65	+	5.61224	9.32e-05	1	GGCAGGTAATGGCAAGTT
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50084511..50084625,+__1540.1.1.0	48	65	+	5.61224	9.32e-05	1	GGCAGGTAATGGCAAGTT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	36	46	-	9.67273	9.32e-05	0.257	ATTGACTCATT
FOSL1	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	56	66	+	9.67273	9.32e-05	0.257	ATTGACTCATT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	49	59	-	9.67273	9.32e-05	0.257	ATTGACTCATT
FOSL1	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	69	79	+	9.67273	9.32e-05	0.257	ATTGACTCATT
Ddit3::Cebpa	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	33	44	+	10.7778	9.32e-05	1	TTGTGCAATCGG
Ddit3::Cebpa	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	71	82	-	10.7778	9.32e-05	1	TTGTGCAATCGG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.1.0	10	27	+	3.5	9.32e-05	0.352	AAGTCACACCCACACGAG
KLF13	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.1.0	44	61	-	3.5	9.32e-05	0.352	AAGTCACACCCACACGAG
Stat4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.1.0	60	73	+	10.6207	9.32e-05	0.369	CTTACTGGAAGGAA
Stat4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:140186577..140186691,+__1639.1.0.0	60	73	+	10.6207	9.32e-05	0.369	CTTACTGGAAGGAA
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	30	49	+	2.65138	9.32e-05	0.0757	CCACCCACCCACACTTCCGG
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	30	49	+	2.65138	9.32e-05	0.0757	CCACCCACCCACACTTCCGG
IRF8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.0.0	11	24	-	-4.09091	9.32e-05	0.788	CAGAAACTGGAAAT
IRF8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:24423345..24423459,-__284.1.1.0	11	24	-	-4.09091	9.32e-05	0.788	CAGAAACTGGAAAT
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	51	63	-	10.9388	9.32e-05	0.202	GACAGCTGCTTGA
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.1.0	51	63	-	10.9388	9.32e-05	0.202	GACAGCTGCTTGA
Myod1	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	68	80	-	10.9388	9.32e-05	0.202	GGCACCTGCGAGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	71	+	7.31148	9.32e-05	0.189	CCCCCCCCCCGCCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	84	97	+	7.31148	9.32e-05	0.189	GACCCCCACCTTCG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	84	97	+	7.31148	9.32e-05	0.189	GACCCCCACCTTCG
GLIS2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	84	97	+	7.31148	9.32e-05	0.189	GACCCCCACCTTCG
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	84	97	+	7.31148	9.32e-05	0.189	GACCCCCACCTTCG
YY2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	73	83	+	10.6515	9.32e-05	0.44	GCCCGCCATCC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	89	104	-	8.5303	9.32e-05	0.429	CATTGTCACGGTGACC
NFIA	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	12	21	-	12.0444	9.33e-05	1	AATGCCAACT
NFIA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.0.0	27	36	+	12.0444	9.33e-05	1	CCTGCCAACT
NFIA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	27	36	+	12.0444	9.33e-05	1	CCTGCCAACT
NFIA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.1.0	27	36	+	12.0444	9.33e-05	1	CCTGCCAACT
NFIA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	27	36	+	12.0444	9.33e-05	1	CCTGCCAACT
NFIA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.0	27	36	+	12.0444	9.33e-05	1	CCTGCCAACT
NFIA	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	73	82	+	12.0444	9.33e-05	1	GATGCCAAAA
NFIA	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	94	103	+	12.0444	9.33e-05	1	AATGCCAACT
CTCF	WILDTYPE__mrna.noflip.NA__chrX:132887704..132887818,-__1128.1.0.0	45	63	+	7.93443	9.33e-05	0.134	TCACCAGAATGTGGTACTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	96	114	+	7.93443	9.33e-05	0.134	CAGGCAGGAGAGGGGGCTG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	96	114	+	7.93443	9.33e-05	0.134	CAGGCAGGAGAGGGGGCTG
MAX::MYC	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	44	54	+	9.67347	9.33e-05	0.384	CACCACGTGAC
Npas2	WILDTYPE__Enhancer.noflip.NA__chr11:65255182..65255296,-__2048.1.0.0	32	41	-	11.0656	9.33e-05	0.344	CGCACGTGAC
Npas2	WILDTYPE__Enhancer.noflip.NA__chr11:65255188..65255302,+__1755.1.0.0	68	77	+	11.0656	9.33e-05	0.344	CGCACGTGAC
GMEB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	22	29	+	11.3571	9.33e-05	1	CTACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	22	29	+	11.3571	9.33e-05	1	CTACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	35	42	+	11.3571	9.33e-05	1	CTACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	35	42	+	11.3571	9.33e-05	1	CTACGTAA
GMEB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.1.0	52	59	-	11.3571	9.33e-05	1	CTACGTAA
GMEB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741690..75741804,+__1950.1.0.0	52	59	-	11.3571	9.33e-05	1	CTACGTAA
MSX1	FLIPPED__Enhancer.flip.antisense__chr17:42634012..42634126,+__2545.1.0.0	34	41	+	10.6786	9.33e-05	1	GCAATTAC
MSX1	WILDTYPE__Enhancer.flip.sense__chr17:42634012..42634126,-__2063.1.0.0	74	81	-	10.6786	9.33e-05	1	GCAATTAC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	16	30	+	6.34211	9.33e-05	0.294	AGCGTGAGGCGGCCC
Bach1::Mafk	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	16	30	+	6.34211	9.33e-05	0.294	AGCGTGAGGCGGCCC
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	16	30	+	6.34211	9.33e-05	0.294	AGCGTGAGGCGGCCC
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	16	30	+	6.34211	9.33e-05	0.294	AGCGTGAGGCGGCCC
XBP1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	39	52	+	9.03846	9.33e-05	0.529	GTGGCGACGTCACT
XBP1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	63	76	-	9.03846	9.33e-05	0.529	GTGGCGACGTCACT
GRHL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	28	39	+	10.0345	9.33e-05	1	GAAACCGGATAT
GRHL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	28	39	+	10.0345	9.33e-05	1	GAAACCGGATAT
SP2	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	38	52	+	9.67241	9.33e-05	0.0189	CGCCCACCCCGCCAG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.0.0	45	59	+	9.67241	9.33e-05	0.0189	TCCCCTCCTTTCTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546206..64546320,-__1471.1.1.0	45	59	+	9.67241	9.33e-05	0.0189	TCCCCTCCTTTCTGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	57	71	-	9.67241	9.33e-05	0.0189	CGCCCGCCCTAGTCT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	73	87	+	9.67241	9.33e-05	0.0189	TCCCCTCCTTTCTGG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	73	87	+	9.67241	9.33e-05	0.0189	TCCCCTCCTTTCTGG
SP2	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	63	77	-	9.67241	9.33e-05	0.0189	CGCCCACCCCGCCAG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	90	104	-	9.67241	9.33e-05	0.0189	CCACCGCCTACTGGC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	90	104	-	9.67241	9.33e-05	0.0189	CCACCGCCTACTGGC
SP2	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	95	109	-	9.67241	9.33e-05	0.0189	TTACCTCCCCCCTCG
MAF::NFE2	WILDTYPE__mrna.noflip.NA__chr2:202122754..202122868,+__1058.1.0.0	2	16	+	7.78689	9.33e-05	0.535	GTGAGTCATCTCTGT
TFAP2C(var.3)	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	32	44	-	8.91379	9.33e-05	0.0579	GCCCCTCGCGGCC
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	71	83	+	8.91379	9.33e-05	0.0579	GCCCCTCGCGGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	91	103	+	8.91379	9.33e-05	0.0579	TCCCCCGCCGGGG
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	68	82	-	7.37705	9.33e-05	0.0731	AGCGCCGCCCTCATC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	68	82	-	7.37705	9.33e-05	0.0731	AGCGCCGCCCTCATC
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	24	35	-	2.13793	9.33e-05	0.219	TGACAAGTGCCA
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	24	35	-	2.13793	9.33e-05	0.219	TGACAAGTGCCA
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	98	106	+	10.8605	9.33e-05	0.557	GACAGGTGA
SNAI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	98	106	+	10.8605	9.33e-05	0.557	GACAGGTGA
SNAI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	98	106	+	10.8605	9.33e-05	0.557	GACAGGTGA
SNAI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	98	106	+	10.8605	9.33e-05	0.557	GACAGGTGA
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.0.0	5	19	+	9.78846	9.33e-05	0.236	AAGGCAGCCAATAAA
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971400..23971514,-__2122.1.1.0	5	19	+	9.78846	9.33e-05	0.236	AAGGCAGCCAATAAA
NFYB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.0.0	52	66	-	9.78846	9.33e-05	0.236	AAGGCAGCCAATAAA
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:23971444..23971558,+__1829.1.1.0	52	66	-	9.78846	9.33e-05	0.236	AAGGCAGCCAATAAA
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	10.8846	9.33e-05	0.148	GCCGGAAGGG
Hoxb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	13	28	+	10.6234	9.33e-05	1	AAGATAATTAAAACTT
Hoxb5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	13	28	+	10.6234	9.33e-05	1	AAGATAATTAAAACTT
Hoxb5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	13	28	+	10.6234	9.33e-05	1	AAGATAATTAAAACTT
Hoxb5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	13	28	+	10.6234	9.33e-05	1	AAGATAATTAAAACTT
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	+	10.92	9.34e-05	0.822	ATTGCGCCAC
CEBPB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	-	10.92	9.34e-05	0.822	ATTGCGCCAC
SPI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.0.0	20	33	+	1.61818	9.34e-05	0.272	CTAAACAGGAAGCC
SPI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr16:21312125..21312239,+__342.1.2.0	20	33	+	1.61818	9.34e-05	0.272	CTAAACAGGAAGCC
TFAP2C	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	63	74	+	10.7041	9.34e-05	0.0876	AGCCGGGGGGCG
TFAP2C	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	41	52	-	10.7041	9.34e-05	0.0876	AGCCGGGGGGCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	16	32	+	2.6	9.34e-05	0.0354	GACGCGCCTCCCACTTC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	16	32	+	2.6	9.34e-05	0.0354	GACGCGCCTCCCACTTC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	46	62	-	2.6	9.34e-05	0.0354	CACTCCACGCCCCGCAC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	46	62	-	2.6	9.34e-05	0.0354	CACTCCACGCCCCGCAC
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	46	62	-	2.6	9.34e-05	0.0354	CACTCCACGCCCCGCAC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	93	109	-	2.6	9.34e-05	0.0354	GACGCGCCTCCCACTTC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	93	109	-	2.6	9.34e-05	0.0354	GACGCGCCTCCCACTTC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	20	29	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	20	29	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	20	29	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__mrna.noflip.NA__chr7:93204001..93204115,-__1110.1.0.0	11	20	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__mrna.flip.sense__chr2:160471915..160472029,-__1175.1.0.0	19	28	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	34	43	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	43	52	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.4.0	35	44	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.1.0	35	44	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.3.0	35	44	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601386..209601500,+__1833.1.0.0	35	44	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	41	50	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr1:151319404..151319518,+__19.1.0.0	59	68	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr1:209601386..209601500,-__2839.1.0.0	71	80	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	63	72	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	67	76	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	67	76	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	72	81	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	78	87	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	FLIPPED__mrna.flip.antisense__chr2:160471915..160472029,+__2495.1.0.0	87	96	+	10.0275	9.34e-05	0.0553	CCACCCCCGC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	86	95	-	10.0275	9.34e-05	0.0553	CCACCCCCGC
NR2C2	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	1	15	+	8.6	9.34e-05	0.122	GGCGGGGAAGGGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	23	37	-	8.6	9.34e-05	0.122	AAAGGTCAAAAAGCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	23	37	-	8.6	9.34e-05	0.122	AAAGGTCAAAAAGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	23	37	-	8.6	9.34e-05	0.122	AAAGGTCAAAAAGCA
NR2C2	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	38	52	+	8.6	9.34e-05	0.122	GGCGGGGAAGGGGCG
NR2C2	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	46	60	+	8.6	9.34e-05	0.122	GGCGGGCAGAGGCGG
NR2C2	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	63	77	-	8.6	9.34e-05	0.122	GGCGGGGAAGGGGCG
NR2C2	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	100	114	-	8.6	9.34e-05	0.122	GGCGGGGAAGGGGCG
E2F4	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	4	14	-	10	9.34e-05	0.0521	CGGCGAGAAGG
E2F4	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	101	111	+	10	9.34e-05	0.0521	CGGCGAGAAGG
Creb5	WILDTYPE__Enhancer.noflip.NA__chr6:158136895..158137009,+__1813.1.0.0	29	40	+	7.76364	9.34e-05	0.285	CATGACGAAATT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.1.0	19	29	+	10.5528	9.34e-05	0.028	CCACCGCCCCT
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	19	29	+	10.5528	9.34e-05	0.028	CCACCGCCCCT
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	19	29	+	10.5528	9.34e-05	0.028	CCACCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.0.0	19	29	+	10.5528	9.34e-05	0.028	CCACCGCCCCT
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	90	100	+	10.5528	9.34e-05	0.028	CGCACGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	90	100	+	10.5528	9.34e-05	0.028	CGCACGCCCCA
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	90	100	+	10.5528	9.34e-05	0.028	CGCACGCCCCA
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	90	100	+	10.5528	9.34e-05	0.028	CGCACGCCCCA
SP3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.2.0	67	77	-	10.5528	9.34e-05	0.028	CACACCCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25214097..25214211,-__2184.1.0.0	67	77	-	10.5528	9.34e-05	0.028	CACACCCCCAC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	5	25	-	8.97959	9.34e-05	0.0234	AGGGGCGGGGGAACCAAGAGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	5	25	-	8.97959	9.34e-05	0.0234	AGGGGCGGGGGAACCAAGAGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	10	30	-	8.97959	9.34e-05	0.0234	TGGGGTGGGGTTAGGGGAGTG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	20	40	-	8.97959	9.34e-05	0.0234	GGAGGGGCAGGAGGCGGAGCC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	20	40	-	8.97959	9.34e-05	0.0234	GGAGGGGCAGGAGGCGGAGCC
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	20	40	-	8.97959	9.34e-05	0.0234	GGAGGGGCAGGAGGCGGAGCC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	20	40	-	8.97959	9.34e-05	0.0234	GGAGGGGCAGGAGGCGGAGCC
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:28875089..28875203,+__1505.1.0.0	21	41	-	8.97959	9.34e-05	0.0234	GAAGGAAGAGACCATAGAGAA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	18	38	+	8.97959	9.34e-05	0.0234	CAGGGAGAAAGACGCGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	46	66	+	8.97959	9.34e-05	0.0234	CAGGGAGAAAGACGCGGAGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	51	71	+	8.97959	9.34e-05	0.0234	GGAAGAGGAAGAGAGATTTGA
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	59	79	+	8.97959	9.34e-05	0.0234	GGAGGAGAGGAGGAGAGACCC
ZNF263	FLIPPED__mrna.flip.antisense__chr16:28875089..28875203,-__2819.1.0.0	74	94	+	8.97959	9.34e-05	0.0234	GAAGGAAGAGACCATAGAGAA
ZNF263	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	75	95	+	8.97959	9.34e-05	0.0234	GGAGGGGCAGGAGGCGGAGCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	93	113	+	8.97959	9.34e-05	0.0234	GGAGGAGAGGAGGAGAGACCC
REL	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	4	13	+	10.8283	9.34e-05	0.341	CGGGGTTACC
REL	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	80	89	+	10.8283	9.34e-05	0.341	TGGGAGTTCC
NFIC::TLX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	67	80	-	4.13265	9.34e-05	0.382	TGGCCTGTCTCCAA
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	67	80	-	4.13265	9.34e-05	0.382	TGGCCTGTCTCCAA
TCF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	74	83	+	11.2857	9.34e-05	0.431	TCCACCTGTC
TCF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	74	83	+	11.2857	9.34e-05	0.431	TCCACCTGTC
Dlx1	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	51	60	+	9.75439	9.34e-05	1	CTTAATTACC
Dlx1	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	73	82	-	9.75439	9.34e-05	1	CTTAATTACC
Vdr	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	8	23	+	2.88525	9.34e-05	0.885	GAGTTCAGTCAGATCG
Vdr	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	88	103	-	2.88525	9.34e-05	0.885	GAGTTCAGTCAGATCG
Hnf4a	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	6	21	+	1.85455	9.34e-05	0.603	GGGCCCATAGTCCACG
Hnf4a	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	94	109	-	1.85455	9.34e-05	0.603	GGGCCCATAGTCCACG
RXRA::VDR	FLIPPED__Enhancer.flip.antisense__chr1:33446918..33447032,-__2844.1.0.0	24	38	-	4.91743	9.34e-05	1	GGGTGAACAGTTTCA
RXRA::VDR	WILDTYPE__Enhancer.flip.sense__chr1:33446918..33447032,+__1839.1.0.0	77	91	+	4.91743	9.34e-05	1	GGGTGAACAGTTTCA
PPARG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	63	82	+	6.17778	9.34e-05	1	CAAGGGCACCCGCTCTCATT
PPARG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	63	82	+	6.17778	9.34e-05	1	CAAGGGCACCCGCTCTCATT
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	63	82	+	6.17778	9.34e-05	1	CAAGGGCACCCGCTCTCATT
PAX5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	71	89	+	9.93548	9.34e-05	0.155	TGGGCCGGCGGTCCAGGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	71	89	+	9.93548	9.34e-05	0.155	TGGGCCGGCGGTCCAGGGC
ELF3	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	21	33	+	7.36207	9.34e-05	0.193	ACACCGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	25	37	+	7.36207	9.34e-05	0.193	ACACCGGAAGTCA
ELF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.0.0	56	68	+	7.36207	9.34e-05	0.193	ACACCGGAAGTCA
ELF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	56	68	+	7.36207	9.34e-05	0.193	ACACCGGAAGTCA
Sox11	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	60	74	+	-15.4857	9.34e-05	1	ATCACTTTCATTTTT
Hoxd3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.1.0	10	25	-	10.7792	9.34e-05	1	CTGGTGTAATTATGCA
Hoxd3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73929044..73929158,+__299.1.0.0	10	25	-	10.7792	9.34e-05	1	CTGGTGTAATTATGCA
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	9	23	+	5.34483	9.34e-05	0.0418	CCCCCCCCCCCCGTG
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	9	23	+	5.34483	9.34e-05	0.0418	CCCCCCCCCCCCGTG
EGR3	WILDTYPE__mrna.noflip.NA__chr2:220071565..220071679,+__1366.1.0.0	14	28	-	5.34483	9.34e-05	0.0418	CCTCTCCCCCGCCCA
EGR3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	92	106	-	5.34483	9.34e-05	0.0418	CCCCCCCCCCCCGTG
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	44	61	+	-16.0921	9.35e-05	0.0556	GGGAGGGAGGAGGCGGTG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	54	71	-	-16.0921	9.35e-05	0.0556	GGGAGGGAGGAGGCGGTG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	56	73	-	-16.0921	9.35e-05	0.0556	GGGAGGGAGGGGAGAGGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	56	73	-	-16.0921	9.35e-05	0.0556	GGGAGGGAGGGGAGAGGA
EWSR1-FLI1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	66	83	-	-16.0921	9.35e-05	0.0556	GGGAGGAGGGGTGGAGCT
TFAP2B	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	19	30	+	10.7091	9.35e-05	0.0953	CCGCCTCGGGCA
TFAP2B	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	15	26	-	10.7091	9.35e-05	0.0953	CCCCCCGCGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	46	57	-	10.7091	9.35e-05	0.0953	TTCCCGAAGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	46	57	-	10.7091	9.35e-05	0.0953	TTCCCGAAGGCA
TFAP2B	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	85	96	-	10.7091	9.35e-05	0.0953	CCGCCTCGGGCA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	17	26	+	9.70629	9.35e-05	0.124	ACCACGCGGC
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	17	26	+	9.70629	9.35e-05	0.124	ACCACGCGGC
Hes1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	52	61	-	9.70629	9.35e-05	0.124	ACCACGCGGC
FOXP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	92	102	+	10.8939	9.35e-05	1	GAGAAAACACA
FOXP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	92	102	+	10.8939	9.35e-05	1	GAGAAAACACA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.1	36	49	-	4.57143	9.35e-05	0.0782	GCGGCCCAGGGGCG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.0.0	36	49	-	4.57143	9.35e-05	0.0782	GCGGCCCAGGGGCG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:122042743..122042857,-__1271.1.1.0	36	49	-	4.57143	9.35e-05	0.0782	GCGGCCCAGGGGCG
STAT1::STAT2	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	14	28	+	8.81818	9.35e-05	0.356	CGCCTTTCACTTCCC
STAT1::STAT2	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	87	101	-	8.81818	9.35e-05	0.356	CGCCTTTCACTTCCC
HNF4G	WILDTYPE__Antisense.noflip.NA__chr12:47609999..47610113,-__230.1.0.0	65	79	-	10.1538	9.35e-05	0.382	AAGAGCCAAGGGTCT
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	101	111	-	10.9455	9.35e-05	0.736	GCCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	101	111	-	10.9455	9.35e-05	0.736	GCCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	101	111	-	10.9455	9.35e-05	0.736	GCCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	101	111	-	10.9455	9.35e-05	0.736	GCCCACTCAGC
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	101	111	-	10.9455	9.35e-05	0.736	GCCCACTCAGC
JDP2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	64	75	+	5.55102	9.35e-05	0.271	CCTTACGTAATT
NFYA	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	67	84	+	8.34146	9.35e-05	0.225	TGAACGTGGATTGGCTGC
NFYA	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	31	48	-	8.34146	9.35e-05	0.225	TGAACGTGGATTGGCTGC
NFYA	WILDTYPE__Lincrna.noflip.NA__chrX:53123253..53123367,+__938.1.0.0	44	61	-	8.34146	9.35e-05	0.225	CCGGCTCCCATTGGAGGA
BHLHE40	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	23	32	+	10.1731	9.35e-05	0.306	AGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	23	32	+	10.1731	9.35e-05	0.306	AGCACGCGCC
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	46	56	-	10.4898	9.35e-05	0.185	CTCAGGTGATT
USF2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	46	56	-	10.4898	9.35e-05	0.185	CTCAGGTGATT
USF2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	46	56	-	10.4898	9.35e-05	0.185	CTCAGGTGATT
USF2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	46	56	-	10.4898	9.35e-05	0.185	CTCAGGTGATT
EBF1	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	9	22	+	8.27869	9.35e-05	0.368	GAACCCTGGGGAAA
EBF1	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	45	-	8.27869	9.35e-05	0.368	CCTCCCCCGGGGCA
EBF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	63	76	-	8.27869	9.35e-05	0.368	ACTCCCAGGGTGCT
GLIS1	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	17	32	+	-11.1538	9.36e-05	0.33	AGGCGCCCCAGGAAGG
GLIS1	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	83	98	-	-11.1538	9.36e-05	0.33	AGGCGCCCCAGGAAGG
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	30	42	+	9.4918	9.36e-05	0.0589	CGCCCTTCCGGCT
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	55	67	+	9.4918	9.36e-05	0.0589	GCCCCCCTGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	78	90	+	9.4918	9.36e-05	0.0589	CGCCCACAAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	78	90	+	9.4918	9.36e-05	0.0589	CGCCCACAAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	5	17	-	9.4918	9.36e-05	0.0589	CGCCCACAAGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	5	17	-	9.4918	9.36e-05	0.0589	CGCCCACAAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	48	60	-	9.4918	9.36e-05	0.0589	GCCCCCCTGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	48	60	-	9.4918	9.36e-05	0.0589	GCCCCCCTGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	48	60	-	9.4918	9.36e-05	0.0589	GCCCCCCTGGGGG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	60	72	-	9.4918	9.36e-05	0.0589	GGCCACCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	60	72	-	9.4918	9.36e-05	0.0589	GGCCACCAGGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	-	9.4918	9.36e-05	0.0589	CGCCCTGCAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	-	9.4918	9.36e-05	0.0589	CGCCCTGCAGGGC
STAT3	FLIPPED__mrna.flip.antisense__chr16:2014792..2014906,+__2490.1.0.0	44	54	+	10.5306	9.36e-05	0.352	CTACTGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	61	71	-	10.5306	9.36e-05	0.352	CTACTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.0.0	61	71	-	10.5306	9.36e-05	0.352	CTACTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.0	61	71	-	10.5306	9.36e-05	0.352	CTACTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.1.0	61	71	-	10.5306	9.36e-05	0.352	CTACTGGGAAG
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	8	17	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	8	17	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	12	21	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	12	21	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	4	13	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr17:5015136..5015250,+__2492.1.0.0	14	23	+	10.4082	9.36e-05	0.0289	CCCTCACCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	7	16	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	7	16	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	7	16	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	16	25	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	18	27	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	18	27	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.1.0	18	27	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	18	27	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	20	29	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	13	22	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr22:27053472..27053586,+__516.1.0.0	13	22	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	24	33	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	24	33	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	25	34	+	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr16:68118640..68118754,-__2747.1.0.0	18	27	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	27	36	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.1.0	28	37	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124873335..124873449,-__997.1.0.0	28	37	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	20	29	-	10.4082	9.36e-05	0.0289	CCCTCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	30	39	+	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	31	40	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	31	40	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.0	33	42	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.0.0	33	42	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:94903461..94903575,+__917.1.1.1	33	42	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.1.0	25	34	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:209848537..209848651,-__49.1.0.0	25	34	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	25	34	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:238649301..238649415,-__60.1.0.0	25	34	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	26	35	-	10.4082	9.36e-05	0.0289	ACTCCGCCCT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	26	35	-	10.4082	9.36e-05	0.0289	ACTCCGCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	40	49	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	43	52	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	43	52	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	43	52	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	43	52	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	44	53	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	35	44	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr1:204042163..204042277,+__963.1.0.0	50	59	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	44	53	-	10.4082	9.36e-05	0.0289	CCCTCACCCC
KLF5	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	56	65	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	66	75	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	71	80	+	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	73	82	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	73	82	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	76	85	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	79	88	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	79	88	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chr16:68118640..68118754,+__1033.1.0.0	88	97	+	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	81	90	-	10.4082	9.36e-05	0.0289	GTTCCACCCC
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.1.0	82	91	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:27053403..27053517,+__515.1.0.0	82	91	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chr1:204042163..204042277,-__2739.1.0.0	88	97	-	10.4082	9.36e-05	0.0289	CTCCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.0.0	92	101	-	10.4082	9.36e-05	0.0289	CCCTCACCCC
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	92	101	-	10.4082	9.36e-05	0.0289	CCCTCACCCC
Tcf12	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	9	19	-	10.7551	9.36e-05	0.211	CGCAGGTGCGG
Tcf12	WILDTYPE__mrna.noflip.NA__chr4:184826434..184826548,+__1083.1.0.0	28	38	-	10.7551	9.36e-05	0.211	CACAGCTGTTT
PRDM1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	79	93	+	9.70909	9.36e-05	0.346	AGGGAGGGAGAGCGG
PRDM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	79	93	+	9.70909	9.36e-05	0.346	AGGGAGGGAGAGCGG
PRDM1	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	22	36	-	9.70909	9.36e-05	0.346	AGGGAGGGAGAGCGG
Myb	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	98	107	+	10.5246	9.36e-05	0.912	CAAACAGCCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	18	31	-	7.91379	9.36e-05	0.0412	AGCCCCGCCCCAGC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	18	31	-	7.91379	9.36e-05	0.0412	AGCCCCGCCCCAGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	18	31	-	7.91379	9.36e-05	0.0412	AGCCCCGCCCCAGC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	18	31	-	7.91379	9.36e-05	0.0412	AGCCCCGCCCCAGC
KLF14	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	23	36	-	7.91379	9.36e-05	0.0412	AGACCCGCCCTTCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	48	61	+	7.91379	9.36e-05	0.0412	CGCCCCGCCTCTCG
KLF14	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	42	55	-	7.91379	9.36e-05	0.0412	AGACCCGCCCTTCC
KLF14	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	60	73	+	7.91379	9.36e-05	0.0412	AGACCCGCCCTTCC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.1	73	86	+	7.91379	9.36e-05	0.0412	GGCTCCTCCCACTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.2.0	73	86	+	7.91379	9.36e-05	0.0412	GGCTCCTCCCACTC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.1.0	73	86	+	7.91379	9.36e-05	0.0412	GGCTCCTCCCACTC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219432929..219433043,-__1561.1.0.0	73	86	+	7.91379	9.36e-05	0.0412	GGCTCCTCCCACTC
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.1.0	87	100	+	7.91379	9.36e-05	0.0412	GATCACGCCCTTGA
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	87	100	+	7.91379	9.36e-05	0.0412	GATCACGCCCTTGA
GLIS3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	93	106	+	2.62121	9.36e-05	0.393	GATCCCCTTCTACG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	26	36	-	10.8163	9.36e-05	0.406	GCTTCTTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	26	36	-	10.8163	9.36e-05	0.406	GCTTCTTGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	26	36	-	10.8163	9.36e-05	0.406	GCTTCTTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	26	36	-	10.8163	9.36e-05	0.406	GCTTCTTGGAA
Stat5a::Stat5b	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	26	36	-	10.8163	9.36e-05	0.406	GCTTCTTGGAA
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.0	54	74	-	4.21429	9.36e-05	0.248	GCCTGGCCCGGGGAGAGCGTT
REST	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	54	74	-	4.21429	9.36e-05	0.248	GCCTGGCCCGGGGAGAGCGTT
EGR1	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	11	24	+	9.55769	9.36e-05	0.0311	CACAAGCCCCCGCG
EGR1	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	1	14	-	9.55769	9.36e-05	0.0311	CCCCCGCCTCTAGC
EGR1	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	21	34	-	9.55769	9.36e-05	0.0311	GATCCGCCTCCATC
EGR1	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	81	94	+	9.55769	9.36e-05	0.0311	GATCCGCCTCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	96	109	+	9.55769	9.36e-05	0.0311	ACCCCTCCTCCAGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	96	109	+	9.55769	9.36e-05	0.0311	ACCCCTCCTCCAGA
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	96	109	+	9.55769	9.36e-05	0.0311	ACCCCTCCTCCAGA
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	96	109	+	9.55769	9.36e-05	0.0311	ACCCCTCCTCCAGA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	28	38	+	10.6731	9.36e-05	0.462	GCAATGACTAA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	28	38	+	10.6731	9.36e-05	0.462	GCAATGACTAA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	88	98	-	10.6731	9.36e-05	0.462	GCAATGACTAA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	88	98	-	10.6731	9.36e-05	0.462	GCAATGACTAA
Tcf21	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	11	24	+	5.22368	9.36e-05	0.572	CTCACATCTGTTAT
Tcf21	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	52	65	+	5.22368	9.36e-05	0.572	CTCACATCTGTTAT
Tcf21	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	50	63	-	5.22368	9.36e-05	0.572	CTCACATCTGTTAT
Tcf21	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	91	104	-	5.22368	9.36e-05	0.572	CTCACATCTGTTAT
CDX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	46	56	+	11.1017	9.36e-05	1	CTCCAATAAAA
CDX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	46	56	+	11.1017	9.36e-05	1	CTCCAATAAAA
ZBTB7B	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	63	74	-	9.77586	9.36e-05	0.365	AGGCCCACCCAC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	41	52	+	9.77586	9.36e-05	0.365	AGGCCCACCCAC
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	41	52	+	9.77586	9.36e-05	0.365	AGGCCCACCCAC
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	41	52	+	9.77586	9.36e-05	0.365	AGGCCCACCCAC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	41	52	+	9.77586	9.36e-05	0.365	AGGCCCACCCAC
Mitf	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	105	114	-	10.4082	9.36e-05	0.286	GGTCATGAGG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	65	77	-	9.01639	9.36e-05	0.0652	GCCCCGCGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	65	77	-	9.01639	9.36e-05	0.0652	GCCCCGCGAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	65	77	-	9.01639	9.36e-05	0.0652	GCCCCGCGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	65	77	-	9.01639	9.36e-05	0.0652	GCCCCGCGAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	65	77	-	9.01639	9.36e-05	0.0652	GCCCCGCGAGGCC
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.0.0	47	56	-	8.87273	9.36e-05	0.271	CTCAGGTGAT
SREBF2(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	47	56	-	8.87273	9.36e-05	0.271	CTCAGGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	47	56	-	8.87273	9.36e-05	0.271	CTCAGGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.0	47	56	-	8.87273	9.36e-05	0.271	CTCAGGTGAT
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr20:52201715..52201829,+__1792.1.0.0	93	102	-	10.6463	9.36e-05	0.472	CTCACATCAT
IRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.1.0	34	54	-	8.12903	9.36e-05	0.19	AAAGACTCTCTCTTTCTCTGA
IRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:112635647..112635761,-__768.1.0.0	34	54	-	8.12903	9.36e-05	0.19	AAAGACTCTCTCTTTCTCTGA
IRF1	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	65	85	+	8.12903	9.36e-05	0.19	TGCTGCTTTCTCTTTAGGCAA
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	53	66	-	9.98485	9.37e-05	0.0687	GGCGCCCCCGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	53	66	-	9.98485	9.37e-05	0.0687	GGCGCCCCCGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	53	66	-	9.98485	9.37e-05	0.0687	GGCGCCCCCGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	53	66	-	9.98485	9.37e-05	0.0687	GGCGCCCCCGCCTC
Gmeb1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	95	111	+	10.4868	9.37e-05	0.668	GCGGTTGCGCCATAGGC
Gmeb1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	95	111	+	10.4868	9.37e-05	0.668	GCGGTTGCGCCATAGGC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	91	100	-	10.4571	9.37e-05	0.254	ACCACCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	91	100	-	10.4571	9.37e-05	0.254	ACCACCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	91	100	-	10.4571	9.37e-05	0.254	ACCACCTGCC
SP8	WILDTYPE__mrna.flip.sense__chr3:33138220..33138334,-__1076.1.0.0	14	25	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	28	39	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	29	40	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	30	41	-	10.2632	9.37e-05	0.0395	TACCCGCCCATT
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	30	41	-	10.2632	9.37e-05	0.0395	TACCCGCCCATT
SP8	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	31	42	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	35	46	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	44	55	-	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	72	83	-	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.1	7	18	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	7	18	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	7	18	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.3.0	7	18	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	7	18	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	32	43	+	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.1	60	71	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	60	71	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	60	71	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.3.0	60	71	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	60	71	+	10.2632	9.37e-05	0.0395	CTCCCGCCCACC
SP8	FLIPPED__mrna.flip.antisense__chr3:33138220..33138334,+__2461.1.0.0	90	101	+	10.2632	9.37e-05	0.0395	GCCCCGCCCGGC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	75	86	-	8.85714	9.37e-05	0.203	TGGCCGGGGGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	33	44	-	8.03636	9.37e-05	0.136	TCTCCGGAAGCC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	33	44	-	8.03636	9.37e-05	0.136	TCTCCGGAAGCC
ELF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	33	44	-	8.03636	9.37e-05	0.136	TCTCCGGAAGCC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	33	44	-	8.03636	9.37e-05	0.136	TCTCCGGAAGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.0	7	16	-	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.2.1	7	16	-	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.0.0	7	16	-	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:41047707..41047821,-__2256.1.1.0	7	16	-	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	15	24	-	10.7755	9.37e-05	0.167	CGCACGTGAG
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	15	24	-	10.7755	9.37e-05	0.167	CGCACGTGAG
TFE3	WILDTYPE__Enhancer.flip.sense__chr22:41047771..41047885,+__1963.1.0.0	35	44	+	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	55	64	+	10.7755	9.37e-05	0.167	CGCACGTGAG
TFE3	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	51	60	-	10.7755	9.37e-05	0.167	CGCACGTGAG
TFE3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	10.7755	9.37e-05	0.167	CGCACGTGCT
TFE3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	10.7755	9.37e-05	0.167	CGCACGTGCT
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	10.7755	9.37e-05	0.167	CGCACGTGCT
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	10.7755	9.37e-05	0.167	CGCACGTGCT
TFE3	FLIPPED__Enhancer.flip.antisense__chr22:41047771..41047885,-__2892.1.0.0	71	80	-	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	FLIPPED__Enhancer.flip.antisense__chr22:41047707..41047821,+__2608.1.0.0	99	108	+	10.7755	9.37e-05	0.167	ATCACATGCC
TFE3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	95	104	-	10.7755	9.37e-05	0.167	CGCACGTGAG
HMBOX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.0.0	3	12	+	10.8226	9.37e-05	1	CTTGGTTACG
HMBOX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:27579075..27579189,+__431.1.1.0	3	12	+	10.8226	9.37e-05	1	CTTGGTTACG
NRF1	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	5	15	+	9.18182	9.37e-05	0.0249	ACCCCGGCGCG
NRF1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	9	19	+	9.18182	9.37e-05	0.0249	ACCCCGGCGCG
NRF1	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	46	56	-	9.18182	9.37e-05	0.0249	ACGGCCGCGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	59	69	+	9.18182	9.37e-05	0.0249	ACGGCCGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	66	76	-	9.18182	9.37e-05	0.0249	GCACTGGCGCA
NRF1	WILDTYPE__Enhancer.noflip.NA__chr6:3403715..3403829,+__1815.1.0.0	88	98	+	9.18182	9.37e-05	0.0249	GCACTGGCGCA
NRF1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	96	106	-	9.18182	9.37e-05	0.0249	ACCCCGGCGCG
Klf1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	11	21	-	10.1061	9.37e-05	0.059	GAACACTCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	11	21	-	10.1061	9.37e-05	0.059	GAACACTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	11	21	-	10.1061	9.37e-05	0.059	GAACACTCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr19:13273753..13273867,-__2180.1.0.0	16	26	-	10.1061	9.37e-05	0.059	TATCACGCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.0.0	26	36	+	10.1061	9.37e-05	0.059	GAACACTCCCT
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030597..121030711,-__2037.1.1.0	26	36	+	10.1061	9.37e-05	0.059	GAACACTCCCT
Klf1	WILDTYPE__Enhancer.noflip.NA__chr19:13273812..13273926,+__1887.1.0.0	30	40	+	10.1061	9.37e-05	0.059	TATCACGCCCA
Klf1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	35	45	-	10.1061	9.37e-05	0.059	GCCCCCTCCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	75	85	+	10.1061	9.37e-05	0.059	GCCCCCTCCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	75	85	+	10.1061	9.37e-05	0.059	GCCCCCTCCCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	17	27	+	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	17	27	+	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	30	40	+	10.6731	9.37e-05	0.0758	AGCCTCCAGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	30	40	+	10.6731	9.37e-05	0.0758	AGCCTCCAGCA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:10588762..10588876,+__391.1.0.0	59	69	+	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	70	80	-	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	70	80	-	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	81	91	-	10.6731	9.37e-05	0.0758	AGCCTCCAGCA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	92	102	+	10.6731	9.37e-05	0.0758	AGCTTAAGGCA
TFAP2C(var.2)	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	88	98	-	10.6731	9.37e-05	0.0758	GGCCCGCGGCA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	94	104	-	10.6731	9.37e-05	0.0758	AGCCTCCAGCA
TFAP2C(var.2)	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	98	108	-	10.6731	9.37e-05	0.0758	AGCCTCCAGCA
HSF2	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	100	112	+	8.21818	9.37e-05	1	TTCTAGGAAATTC
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	39	52	-	4.56122	9.37e-05	0.0782	GAGGGCGACAGGAG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	39	52	-	4.56122	9.37e-05	0.0782	GAGGGCGACAGGAG
PLAG1	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	26	39	+	4.56122	9.37e-05	0.0782	GAGGGGGAAGGGGC
Rarb(var.2)	WILDTYPE__mrna.flip.sense__chr7:101917346..101917460,+__1105.1.0.0	42	58	-	-3.83333	9.37e-05	0.861	GGGCCATCCGGGGTGCA
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.0.0	5	21	+	-3.83333	9.37e-05	0.861	CGGTCAAGCTCAGCCCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:98511745..98511859,-__102.1.1.0	5	21	+	-3.83333	9.37e-05	0.861	CGGTCAAGCTCAGCCCA
Rarb(var.2)	FLIPPED__mrna.flip.antisense__chr7:101917346..101917460,-__2761.1.0.0	57	73	+	-3.83333	9.37e-05	0.861	GGGCCATCCGGGGTGCA
Nr2f6(var.2)	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	15	29	+	-7.15714	9.37e-05	1	AGGGGAAATAGGTTA
Nr2f6(var.2)	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	86	100	-	-7.15714	9.37e-05	1	AGGGGAAATAGGTTA
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	56	68	-	8.89655	9.37e-05	0.0579	GGCCGCTCGGGCG
ZIC1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	30	43	+	5.31915	9.38e-05	0.106	CGCACCCCGTGGCC
NHLH1	FLIPPED__Lincrna.flip.antisense__chr22:48027372..48027486,-__2686.1.0.0	42	51	+	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	42	51	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.0.0	64	73	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	64	73	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.1.0	64	73	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	64	73	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	77	86	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	77	86	-	10.2586	9.38e-05	0.154	AGCAGCTGGC
NHLH1	WILDTYPE__Enhancer.noflip.NA__chr20:48391907..48392021,-__2290.1.0.0	103	112	+	10.2586	9.38e-05	0.154	AGCAGCTGGC
TCF7L2	WILDTYPE__Enhancer.noflip.NA__chr21:36208521..36208635,-__2187.1.0.0	27	40	-	10.4727	9.38e-05	1	GTGGATGAAAGGCC
TCF7L2	WILDTYPE__Enhancer.noflip.NA__chr21:36208496..36208610,+__1894.1.0.0	100	113	+	10.4727	9.38e-05	1	GTGGATGAAAGGCC
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	5	14	-	11.2069	9.38e-05	0.859	CACACCTGCT
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	5	14	-	11.2069	9.38e-05	0.859	CACACCTGCT
Foxd3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.0.0	51	62	+	10.8043	9.38e-05	1	ATTTATTTGCTT
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.0	51	62	+	10.8043	9.38e-05	1	ATTTATTTGCTT
Foxd3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.1.0	51	62	+	10.8043	9.38e-05	1	ATTTATTTGCTT
Foxd3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr1:234764949..234765063,+__58.1.2.1	51	62	+	10.8043	9.38e-05	1	ATTTATTTGCTT
ESR1	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	48	64	+	-1.66667	9.38e-05	0.514	TCTGTCACCGTGCCCGA
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	51	67	-	-1.66667	9.38e-05	0.514	TCTGTCACCGTGCCCGA
ESR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	51	67	-	-1.66667	9.38e-05	0.514	TCTGTCACCGTGCCCGA
ESR1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	51	67	-	-1.66667	9.38e-05	0.514	TCTGTCACCGTGCCCGA
ESR1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	51	67	-	-1.66667	9.38e-05	0.514	TCTGTCACCGTGCCCGA
SCRT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	69	83	+	6.14754	9.38e-05	1	CTGTAACAGGTAATG
SCRT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	69	83	+	6.14754	9.38e-05	1	CTGTAACAGGTAATG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.0.0	24	34	+	9.87931	9.38e-05	0.0267	GCCCCGCCCGT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	24	34	+	9.87931	9.38e-05	0.0267	GCCCCGCCCGT
KLF16	FLIPPED__mrna.flip.antisense__chr6:111804879..111804993,+__2517.1.0.0	81	91	-	9.87931	9.38e-05	0.0267	GCCCCGCCCGT
MLX	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	67	76	+	9.25714	9.38e-05	0.339	ATCACGTTAC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	11	24	-	7.29508	9.38e-05	0.189	TACCCCCCACCCAT
GLIS2	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	44	57	-	7.29508	9.38e-05	0.189	GCCCCCACGCTCCG
GLIS2	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	50	63	-	7.29508	9.38e-05	0.189	CACCCCCAGTTATG
GLIS2	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	58	71	+	7.29508	9.38e-05	0.189	GCCCCCACGCTCCG
Atoh1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	98	107	+	10.9032	9.38e-05	1	TACATATGGT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.0.0	19	36	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.1	19	36	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610684..24610798,-__1493.1.1.0	19	36	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	28	45	+	-16.1053	9.38e-05	0.0556	GGCGGGGAGAGAGGAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	52	69	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	52	69	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	52	69	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	52	69	+	-16.1053	9.38e-05	0.0556	GGGGCGCGGGAAGGCGGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	13	30	-	-16.1053	9.38e-05	0.0556	GGAAGGGAGGGAGAGCGA
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.0.0	81	98	-	-16.1053	9.38e-05	0.0556	GGAAGTAAAGAAACAGAC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.0	81	98	-	-16.1053	9.38e-05	0.0556	GGAAGTAAAGAAACAGAC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr11:2017351..2017465,-__170.1.1.1	81	98	-	-16.1053	9.38e-05	0.0556	GGAAGTAAAGAAACAGAC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	4	13	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	27	36	+	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE__Antisense.noflip.NA__chr10:118609196..118609310,-__108.1.0.0	19	28	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	29	38	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	49	58	+	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	54	63	+	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	52	61	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.1.0	52	61	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	57	66	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	59	68	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	61	70	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	61	70	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	77	86	+	10.0183	9.38e-05	0.0553	CTCCCCCCGC
ZNF740	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	79	88	-	10.0183	9.38e-05	0.0553	CTCCCCCCGC
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	94	105	-	1.30612	9.38e-05	1	TGACAGGTGCGG
SP1	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	16	26	+	10.1346	9.38e-05	0.0214	CCCCCGCCTTA
SP1	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	18	28	+	10.1346	9.38e-05	0.0214	GTTCCACCCAC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.0.0	22	32	-	10.1346	9.38e-05	0.0214	GCTCCTCCTTT
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:35538551..35538665,+__1711.1.1.0	22	32	-	10.1346	9.38e-05	0.0214	GCTCCTCCTTT
SP1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	40	50	-	10.1346	9.38e-05	0.0214	GTTCCTCCCTT
SP1	WILDTYPE__mrna.noflip.NA__chr6:56954832..56954946,+__1102.1.0.0	52	62	+	10.1346	9.38e-05	0.0214	GCTCCTCCTTT
SP1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	65	75	+	10.1346	9.38e-05	0.0214	GTTCCTCCCTT
SP1	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	89	99	-	10.1346	9.38e-05	0.0214	CCCCCGCCTTA
ZIC4	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	61	75	-	9.70909	9.38e-05	0.114	CCCCCCCTCTTGCGC
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	20	34	+	9.70909	9.38e-05	0.114	GCACGCCCGGTGGGC
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	20	34	+	9.70909	9.38e-05	0.114	GCACGCCCGGTGGGC
ZIC4	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	40	54	+	9.70909	9.38e-05	0.114	CCCCCCCTCTTGCGC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr11:62313403..62313517,+__180.1.0.0	57	71	+	9.70909	9.38e-05	0.114	CCCATCCCGCTGGGA
E2F8	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	10	21	+	2.9878	9.38e-05	0.631	TTTTCCCCCGAC
E2F8	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	94	105	-	2.9878	9.38e-05	0.631	TTTTCCCCCGAC
SP4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	14	30	-	2.58182	9.38e-05	0.0354	CGGCCCCCGCCCCTGCG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	38	54	+	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	38	54	+	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	30	46	-	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	30	46	-	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.1.0	31	47	-	2.58182	9.38e-05	0.0354	CGGGCCGCGCCTCCTGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44117148..44117262,+__1278.1.0.0	31	47	-	2.58182	9.38e-05	0.0354	CGGGCCGCGCCTCCTGC
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	57	73	+	2.58182	9.38e-05	0.0354	CGCACCCCACCCCCATC
SP4	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	69	85	+	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	61	77	-	2.58182	9.38e-05	0.0354	CTTCCCCCTCCCCCTCG
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	85	101	+	2.58182	9.38e-05	0.0354	CGGCCCCCGCCCCTGCG
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	85	101	+	2.58182	9.38e-05	0.0354	CGGCCCCCGCCCCTGCG
SP4	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	88	104	-	2.58182	9.38e-05	0.0354	CACGCCCTGCCCCCTCC
E2F4	WILDTYPE__Antisense.flip.sense__chr3:52273191..52273305,+__584.1.0.0	12	22	+	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	32	42	+	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	53	63	-	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	53	63	-	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	53	63	-	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	71	81	-	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
E2F4	FLIPPED__Antisense.flip.antisense__chr3:52273191..52273305,-__2690.1.0.0	93	103	-	9.98276	9.38e-05	0.0521	GCGCGGCAGGG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	33	43	+	10.9636	9.38e-05	0.159	AGCAGGAAGAG
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	49	59	+	10.9636	9.38e-05	0.159	AAACGGAAATA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	49	59	+	10.9636	9.38e-05	0.159	AAACGGAAATA
ELF5	WILDTYPE__Antisense.flip.sense__chr6:30294598..30294712,-__748.1.0.0	52	62	+	10.9636	9.38e-05	0.159	AAGCGGAAGCC
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	56	66	+	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	56	66	+	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	56	66	+	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	2	12	-	10.9636	9.38e-05	0.159	AGCAGGAAGAG
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	12	22	-	10.9636	9.38e-05	0.159	AAACGGAAATA
ELF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	12	22	-	10.9636	9.38e-05	0.159	AAACGGAAATA
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	28	38	-	10.9636	9.38e-05	0.159	AGCAGGAAGAG
ELF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	51	61	-	10.9636	9.38e-05	0.159	AGCAGGAAGAG
ELF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	51	61	-	10.9636	9.38e-05	0.159	AGCAGGAAGAG
ELF5	FLIPPED__Antisense.flip.antisense__chr6:30294598..30294712,+__2418.1.0.0	53	63	-	10.9636	9.38e-05	0.159	AAGCGGAAGCC
ELF5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	72	82	-	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	72	82	-	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	72	82	-	10.9636	9.38e-05	0.159	AACAGGAAATT
ELF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	72	82	-	10.9636	9.38e-05	0.159	AACAGGAAATT
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	18	35	+	5.59184	9.38e-05	1	TACATGTCCCAGCACACC
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	18	35	+	5.59184	9.38e-05	1	TACATGTCCCAGCACACC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	84	94	-	9.69091	9.38e-05	0.432	GTTCTAAGAAT
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	84	94	-	9.69091	9.38e-05	0.432	GTTCTAAGAAT
T	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	6	21	-	7	9.38e-05	1	TGACACATGCCTGGGA
T	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	94	109	+	7	9.38e-05	1	TGACACATGCCTGGGA
HINFP	WILDTYPE__Antisense.noflip.NA__chr7:17338909..17339023,-__791.1.0.0	82	93	+	10.0303	9.38e-05	0.111	CGGCTTCCGCCG
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	77	92	+	8.51515	9.39e-05	0.429	AGTAACCATAGCGGCT
RFX3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	77	92	+	8.51515	9.39e-05	0.429	AGTAACCATAGCGGCT
RFX3	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	23	38	-	8.51515	9.39e-05	0.429	AGTAACCATAGCGGCT
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.1.0	99	109	-	10.1897	9.39e-05	0.0876	GGGCGGCAGGC
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:201476216..201476330,-__1135.1.0.0	99	109	-	10.1897	9.39e-05	0.0876	GGGCGGCAGGC
E2F6	FLIPPED__mrna.flip.antisense__chr1:201476216..201476330,+__2473.1.0.0	6	16	+	10.1897	9.39e-05	0.0876	GGGCGGCAGGC
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	23	38	-	0.0517241	9.39e-05	0.475	CACCCACAGACCACAT
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	86	101	-	-11.1731	9.39e-05	0.33	GGACCGCCTGCGCTGC
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	86	101	-	-11.1731	9.39e-05	0.33	GGACCGCCTGCGCTGC
Npas2	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	11.0492	9.39e-05	0.344	GCCACGTGAG
Npas2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	11.0492	9.39e-05	0.344	GCCACGTGAG
Npas2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	11.0492	9.39e-05	0.344	GCCACGTGAG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	1	10	+	10.051	9.39e-05	0.0302	AAGGTGTGGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	1	10	+	10.051	9.39e-05	0.0302	AAGGTGTGGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	1	10	+	10.051	9.39e-05	0.0302	AAGGTGTGGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	1	10	+	10.051	9.39e-05	0.0302	AAGGTGTGGC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	71	83	+	10.1311	9.39e-05	0.359	TTCTCTGTCACCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	71	83	+	10.1311	9.39e-05	0.359	TTCTCTGTCACCC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.0.0	34	52	+	7.91803	9.39e-05	0.134	GCGCCGGGCGGGGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.1.0	34	52	+	7.91803	9.39e-05	0.134	GCGCCGGGCGGGGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	34	52	+	7.91803	9.39e-05	0.134	GCGCCGGGCGGGGGCGGAG
CTCF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	34	52	+	7.91803	9.39e-05	0.134	GCGCCGGGCGGGGGCGGAG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	43	61	+	7.91803	9.39e-05	0.134	CGGCCAGTGTGTGGAGGTG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	75	93	+	7.91803	9.39e-05	0.134	CGGCCAGTGTGTGGAGGTG
Foxq1	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	18	28	-	10.8776	9.39e-05	1	GGCTGTTTATA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	19	33	-	8.58571	9.39e-05	0.122	GCAGGGGAGGGGCGA
USF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.1	23	33	-	10.3265	9.39e-05	0.239	TACACGTGATC
HLF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	64	75	+	11.0847	9.39e-05	1	CCTTGCGTAATT
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	15	23	+	10.602	9.4e-05	1	TATGCAAAG
POU3F4	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	81	89	+	10.602	9.4e-05	1	TATGCAAAG
BARX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	8	15	+	10.3774	9.4e-05	1	GCAATTAA
BARX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	8	15	+	10.3774	9.4e-05	1	GCAATTAA
BARX1	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	64	+	10.3774	9.4e-05	1	GCAATTAA
BARX1	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	64	+	10.3774	9.4e-05	1	GCAATTAA
Pitx1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	8	15	+	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	33	40	+	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	33	40	+	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.2.0	39	46	+	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr19:12098391..12098505,+__376.1.3.1	39	46	+	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	41	48	+	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	84	91	+	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	84	91	+	11	9.4e-05	1	ATAATCCC
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.0.0	7	14	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.1.0	7	14	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.0	7	14	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:185776772..185776886,-__623.1.2.1	7	14	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	18	25	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.1.0	26	33	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:4285846..4285960,-__124.1.0.0	26	33	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE__Enhancer.noflip.NA__chr1:158146798..158146912,-__2027.1.0.0	54	61	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE__Antisense.noflip.NA__chr5:43602955..43603069,-__696.1.0.0	68	75	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	78	85	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE__Antisense.flip.sense__chr3:136580886..136581000,-__549.1.0.0	78	85	+	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	78	85	+	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE__Lincrna.noflip.NA__chr10:4285914..4286028,-__125.1.0.0	94	101	+	12.0656	9.4e-05	0.507	TCAATCAA
BARX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	58	-	10.3774	9.4e-05	1	GCAATTAA
BARX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	58	-	10.3774	9.4e-05	1	GCAATTAA
Pitx1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	6	13	-	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	6	13	-	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	10	17	-	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE__Enhancer.noflip.NA__chr9:29213983..29214097,-__2120.1.0.0	33	40	-	11	9.4e-05	1	ATAATCCC
Pitx1	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	67	74	-	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	70	77	-	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	70	77	-	11	9.4e-05	1	ATAATCCC
Pitx1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.0.0	96	103	-	11	9.4e-05	1	TTAATCCT
Pitx1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr14:75083315..75083429,-__300.1.1.0	96	103	-	11	9.4e-05	1	TTAATCCT
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.0.0	2	9	-	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:64546234..64546348,-__1472.1.1.0	2	9	-	12.0656	9.4e-05	0.507	TCAATCAA
Dux	FLIPPED__Antisense.flip.antisense__chr3:136580886..136581000,+__2390.1.0.0	30	37	-	12.0656	9.4e-05	0.507	TCAATCAA
Dux	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	54	61	-	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	54	61	-	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	54	61	-	12.0656	9.4e-05	0.507	ACAATCAA
Dux	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	54	61	-	12.0656	9.4e-05	0.507	ACAATCAA
HOXA5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.1.0	9	16	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:112279772..112279886,+__1154.1.0.0	9	16	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE__Lincrna.noflip.NA__chr11:111649056..111649170,-__153.1.0.0	19	26	+	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	26	33	+	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE__mrna.noflip.NA__chr8:35092915..35093029,+__1115.1.0.0	49	56	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	82	89	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	FLIPPED__mrna.flip.antisense__chr12:112279772..112279886,-__2776.1.0.0	99	106	+	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	93	100	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	93	100	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	93	100	-	10.32	9.4e-05	1	CGCTAATG
HOXA5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	93	100	-	10.32	9.4e-05	1	CGCTAATG
NFYA	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	29	46	+	8.32927	9.4e-05	0.225	CGGCTCCCGATTGGGCGG
NFYA	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	94	111	+	8.32927	9.4e-05	0.225	CGGCTCCCGATTGGGCGG
NFYA	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	4	21	-	8.32927	9.4e-05	0.225	CGGCTCCCGATTGGGCGG
NFYA	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	69	86	-	8.32927	9.4e-05	0.225	CGGCTCCCGATTGGGCGG
Stat4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	12	25	-	10.6034	9.4e-05	0.369	GTTCCCGGAAGCCG
Stat4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	90	103	+	10.6034	9.4e-05	0.369	GTTCCCGGAAGCCG
Sox6	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	27	36	-	10.9571	9.4e-05	0.937	CTTTTGTTCT
Esrra	WILDTYPE__Enhancer.flip.sense__chr19:42037972..42038086,+__2000.1.0.0	45	55	-	6.49091	9.4e-05	1	CTCAAGCTCAT
Esrra	FLIPPED__Enhancer.flip.antisense__chr19:42037972..42038086,-__2894.1.0.0	60	70	+	6.49091	9.4e-05	1	CTCAAGCTCAT
Gabpa	FLIPPED__mrna.flip.antisense__chr1:100731714..100731828,-__2765.1.0.0	29	39	+	10.2295	9.4e-05	0.0794	GCGGAAGAAGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	46	56	-	10.2295	9.4e-05	0.0794	GCGGAAGAAGC
Gabpa	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	59	69	+	10.2295	9.4e-05	0.0794	GCGGAAGAAGC
Gabpa	WILDTYPE__mrna.noflip.NA__chr2:120124304..120124418,-__1355.1.0.0	63	73	+	10.2295	9.4e-05	0.0794	ACGGAAGTAGG
Gabpa	WILDTYPE__mrna.flip.sense__chr1:100731714..100731828,+__1131.1.0.0	76	86	-	10.2295	9.4e-05	0.0794	GCGGAAGAAGC
ZBTB7C	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	24	35	-	10.7097	9.4e-05	0.281	CCCACCACCAAG
ZBTB7C	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	80	91	+	10.7097	9.4e-05	0.281	CCCACCACCAAG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.1	12	23	+	10.6939	9.4e-05	0.0876	AGGCCGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.2.0	12	23	+	10.6939	9.4e-05	0.0876	AGGCCGGGGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.0.0	12	23	+	10.6939	9.4e-05	0.0876	AGGCCGGGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665858..11665972,+__1684.1.1.0	12	23	+	10.6939	9.4e-05	0.0876	AGGCCGGGGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	39	50	+	10.6939	9.4e-05	0.0876	GGCCCTGAGGGA
TFAP2C	WILDTYPE__Antisense.flip.sense__chr10:38146597..38146711,+__123.1.0.0	49	60	+	10.6939	9.4e-05	0.0876	TCCCCGCAGCCA
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	42	53	-	10.6939	9.4e-05	0.0876	TCCCCCGCGGCG
TFAP2C	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	42	53	-	10.6939	9.4e-05	0.0876	TCCCCCGCGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	42	53	-	10.6939	9.4e-05	0.0876	TCCCCCGCGGCG
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	42	53	-	10.6939	9.4e-05	0.0876	TCCCCCGCGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	42	53	-	10.6939	9.4e-05	0.0876	TCCCCCGCGGCG
TFAP2C	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	43	54	-	10.6939	9.4e-05	0.0876	GGCCCTGAGGGA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:38146597..38146711,-__2627.1.0.0	55	66	-	10.6939	9.4e-05	0.0876	TCCCCGCAGCCA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	2	17	+	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	2	17	+	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	2	17	+	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	2	17	+	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	2	17	+	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	38	53	-	9.63636	9.4e-05	0.0418	CCCCGCACCCGCGCCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	38	53	-	9.63636	9.4e-05	0.0418	CCCCGCACCCGCGCCA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	38	53	-	9.63636	9.4e-05	0.0418	CCCCGCACCCGCGCCA
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	59	74	+	9.63636	9.4e-05	0.0418	CCCCGCCCCCGTTCCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	59	74	+	9.63636	9.4e-05	0.0418	CCCCGCCCCCGTTCCC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	98	113	-	9.63636	9.4e-05	0.0418	TCCCCCCCCCCCCCCC
Rarb	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	29	44	+	-5.7069	9.4e-05	1	CCGGGCGAAGAGGTTA
Rarb	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	71	86	-	-5.7069	9.4e-05	1	CCGGGCGAAGAGGTTA
EMX2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	10.9574	9.4e-05	1	TCTAATTAGT
SRY	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.0.0	38	46	-	10.4444	9.4e-05	1	ATTAACAAT
SRY	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92413341..92413455,-__1022.1.1.0	38	46	-	10.4444	9.4e-05	1	ATTAACAAT
BHLHE40	FLIPPED__Lincrna.flip.antisense__chr1:229406754..229406868,+__2326.1.0.0	29	38	+	10.1346	9.4e-05	0.306	CTCACGCGCC
BHLHE40	WILDTYPE__Lincrna.flip.sense__chr1:229406754..229406868,-__54.1.0.0	77	86	-	10.1346	9.4e-05	0.306	CTCACGCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	5	19	+	9.65517	9.4e-05	0.0191	GCAGCGCCCCCTCCC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	5	19	+	9.65517	9.4e-05	0.0191	GCAGCGCCCCCTCCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.1.0	18	32	+	9.65517	9.4e-05	0.0191	CGCCCACCTTCTCGT
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:53073460..53073574,+__1256.1.0.0	18	32	+	9.65517	9.4e-05	0.0191	CGCCCACCTTCTCGT
SP2	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	24	38	-	9.65517	9.4e-05	0.0191	GCCCCTCCCAAGGGT
SP2	WILDTYPE__Antisense.noflip.NA__chr1:39325576..39325690,+__73.1.0.0	42	56	+	9.65517	9.4e-05	0.0191	GCCGCGCCTCTAGCC
MAX::MYC	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	41	51	-	9.66327	9.4e-05	0.384	CACCACGTGTC
MAX::MYC	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	64	74	+	9.66327	9.4e-05	0.384	CACCACGTGTC
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.1.0	19	28	+	10.8283	9.4e-05	0.185	GGAGGGGTTA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:9862777..9862891,-__1043.1.0.0	19	28	+	10.8283	9.4e-05	0.185	GGAGGGGTTA
MZF1(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	30	39	+	10.8283	9.4e-05	0.185	CAAGGGGGAG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	69	79	-	9.96552	9.41e-05	0.0521	ACGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	69	79	-	9.96552	9.41e-05	0.0521	ACGCGCGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	69	79	-	9.96552	9.41e-05	0.0521	ACGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	69	79	-	9.96552	9.41e-05	0.0521	ACGCGCGAGGC
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	69	79	-	9.96552	9.41e-05	0.0521	ACGCGCGAGGC
ZIC3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	43	57	+	7.22857	9.41e-05	0.126	AGCTACCTGCTGTGG
ZIC3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	43	57	+	7.22857	9.41e-05	0.126	AGCTACCTGCTGTGG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr7:29603272..29603386,+__2427.1.0.0	1	11	-	10.8182	9.41e-05	0.0575	ACCCGGAGGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	55	65	+	10.8182	9.41e-05	0.0575	CGCCGTAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:29603237..29603351,-__803.1.0.0	69	79	+	10.8182	9.41e-05	0.0575	ACCCGGAGGCT
TFAP2A	WILDTYPE__Antisense.flip.sense__chr7:29603272..29603386,-__804.1.0.0	104	114	+	10.8182	9.41e-05	0.0575	ACCCGGAGGCT
PLAG1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	10	23	+	4.55102	9.41e-05	0.0782	CAGGCGCTCAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	10	23	+	4.55102	9.41e-05	0.0782	CAGGCGCTCAGGGG
TBX20	WILDTYPE__Enhancer.noflip.NA__chr11:118792018..118792132,-__2047.1.0.0	67	77	-	10.0606	9.41e-05	1	AGTGTGTGAAG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	35	47	-	9	9.41e-05	0.0652	CGCCCACCAGGCT
ELK4	WILDTYPE__Antisense.noflip.NA__chr9:98637708..98637822,-__920.1.0.0	6	16	-	10.6	9.41e-05	0.0786	GCCCTTCCTGC
ELK4	FLIPPED__Antisense.flip.antisense__chr7:8301765..8301879,-__2723.1.0.0	27	37	-	10.6	9.41e-05	0.0786	GCCCTTCCTGC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.0.0	40	50	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.0	40	50	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.1.0	40	50	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:5932135..5932249,+__1408.1.2.1	40	50	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	51	61	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE__Antisense.noflip.NA__chr7:79083301..79083415,+__815.1.0.0	60	70	-	10.6	9.41e-05	0.0786	GCCCTTCCTGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	75	85	-	10.6	9.41e-05	0.0786	TTGCTTCCTGT
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	101	111	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	101	111	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.0	101	111	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.0.0	101	111	-	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE__Antisense.flip.sense__chr9:98637803..98637917,-__921.1.0.0	101	111	-	10.6	9.41e-05	0.0786	GCCCTTCCTGC
ELK4	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	104	114	-	10.6	9.41e-05	0.0786	TTGCTTCCTGT
ELK4	FLIPPED__Antisense.flip.antisense__chr9:98637803..98637917,+__2443.1.0.0	4	14	+	10.6	9.41e-05	0.0786	GCCCTTCCTGC
ELK4	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	8	18	+	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	50	60	+	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	50	60	+	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	50	60	+	10.6	9.41e-05	0.0786	CGACTTCCTCC
ELK4	WILDTYPE__Antisense.flip.sense__chr7:8301765..8301879,+__816.1.0.0	78	88	+	10.6	9.41e-05	0.0786	GCCCTTCCTGC
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	64	78	+	8.80303	9.41e-05	0.357	TGGGTTTCGCATCCT
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	3	16	-	4.09184	9.41e-05	0.382	TGGCTGGAAGACAT
NFIC::TLX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:3200555..3200669,-__2060.1.1.0	6	19	-	4.09184	9.41e-05	0.382	TAGCTGGAAGCCAT
NFIC::TLX1	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	99	112	+	4.09184	9.41e-05	0.382	TGGCTGGAAGACAT
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	46	59	-	6.57143	9.41e-05	0.251	TCGTGACGCCATCA
ATF7	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	71	84	+	6.57143	9.41e-05	0.251	TCGTGACGCCATCA
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr12:92996282..92996396,-__2285.1.0.0	96	111	+	9.86585	9.41e-05	1	GATTTTGCAAATGACC
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	36	47	+	2.12069	9.41e-05	0.219	GGGCTCGTGCCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	36	47	+	2.12069	9.41e-05	0.219	GGGCTCGTGCCA
HES7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	78	89	+	2.12069	9.41e-05	0.219	GGGCTCGTGCCA
HES7	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	78	89	+	2.12069	9.41e-05	0.219	GGGCTCGTGCCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.1.0	43	55	+	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451688..35451802,-__286.1.0.0	43	55	+	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	46	58	+	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.1.0	82	94	+	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:35451727..35451841,-__287.1.0.0	82	94	+	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274366..203274480,-__44.1.0.0	7	19	-	9.47541	9.41e-05	0.0589	CGCCGCCAAGGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451727..35451841,+__2362.1.0.0	21	33	-	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.1.0	37	49	-	9.47541	9.41e-05	0.0589	GCCCGCCCGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508562..16508676,+__1930.1.0.0	37	49	-	9.47541	9.41e-05	0.0589	GCCCGCCCGGGCT
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	43	55	-	9.47541	9.41e-05	0.0589	CGCCGCCAAGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	57	69	-	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	57	69	-	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	57	69	-	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	57	69	-	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	57	69	-	9.47541	9.41e-05	0.0589	TGCCTGGGCGGGA
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr14:35451688..35451802,+__2361.1.0.0	60	72	-	9.47541	9.41e-05	0.0589	TGCCTGCGCGGCT
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:122407602..122407716,+__395.1.0.0	99	111	-	9.47541	9.41e-05	0.0589	TCCCCAAAAGGCA
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	75	92	+	-16.1184	9.41e-05	0.0556	GGGAGGGATGCTGGGAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694657..139694771,+__609.1.0.0	13	30	-	-16.1184	9.41e-05	0.0556	GGAAGGAAGAAACCCTAT
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	14	31	-	-16.1184	9.41e-05	0.0556	GGCGGAAGGCAAGGAACC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	23	40	-	-16.1184	9.41e-05	0.0556	GGGAGGGATGCTGGGAGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	23	40	-	-16.1184	9.41e-05	0.0556	GGGAGGGATGCTGGGAGC
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr4:139694623..139694737,+__608.1.0.0	47	64	-	-16.1184	9.41e-05	0.0556	GGAAGGAAGAAACCCTAT
YY2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.0.0	25	35	-	10.6212	9.42e-05	0.44	GGTCGCCATGG
YY2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:135818912..135819026,+__733.1.1.0	25	35	-	10.6212	9.42e-05	0.44	GGTCGCCATGG
YY2	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	66	76	-	10.6212	9.42e-05	0.44	GGTCGCCATGG
YY2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	39	49	+	10.6212	9.42e-05	0.44	GGTCGCCATGG
YY2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	39	49	+	10.6212	9.42e-05	0.44	GGTCGCCATGG
YY2	FLIPPED__Antisense.flip.antisense__chr6:135818912..135819026,-__2712.1.0.0	80	90	+	10.6212	9.42e-05	0.44	GGTCGCCATGG
PPARG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:61996164..61996278,-__1527.1.2.0	80	99	+	6.15556	9.42e-05	1	AAGGATCCCAGGGCCCAACT
RORA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	34	47	+	6.13483	9.42e-05	1	GAAATTCAGGTCAC
SPDEF	WILDTYPE__mrna.noflip.NA__chr9:130565498..130565612,+__1295.1.0.0	6	16	+	9.47273	9.42e-05	0.279	ACCAGGAAGTT
SPDEF	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	60	70	+	9.47273	9.42e-05	0.279	ACCAGGAAGTT
LEF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.0.0	38	52	-	7.80645	9.42e-05	1	ATAAATCAAAGGGGG
LEF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:47417123..47417237,-__178.1.1.0	38	52	-	7.80645	9.42e-05	1	ATAAATCAAAGGGGG
Pparg::Rxra	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	51	65	+	10.3243	9.42e-05	0.19	GGCGGTCAGAGGGTA
Pparg::Rxra	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	50	64	-	10.3243	9.42e-05	0.19	GGCGGTCAGAGGGTA
RELA	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.1.0	42	51	+	8.54082	9.42e-05	0.277	TGGGTATTCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	42	51	+	8.54082	9.42e-05	0.277	TGGGTATTCC
RELA	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	64	73	-	8.54082	9.42e-05	0.277	TGGGTATTCC
SP1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	43	53	+	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.1.0	51	61	-	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.0.0	51	61	-	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.1	51	61	-	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:150946895..150947009,-__953.1.2.0	51	61	-	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
SP1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	62	72	-	10.1154	9.42e-05	0.0214	CTCCCTCCTCG
INSM1	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	28	39	-	8.84694	9.42e-05	0.203	TGCCAGGGTGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	32	46	-	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	32	46	-	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	32	46	-	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	32	46	-	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	81	95	+	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	81	95	+	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	81	95	+	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	81	95	+	9.01515	9.42e-05	0.368	AAGGATGAGTCACCT
KLF14	WILDTYPE__Lincrna.noflip.NA__chr14:75761064..75761178,+__303.1.0.0	6	19	+	7.89655	9.42e-05	0.0412	CGCCGCGCCCCGCC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	12	25	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	12	25	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	6	19	-	7.89655	9.42e-05	0.0412	CGCCGCGCCCCGCC
KLF14	WILDTYPE__Antisense.noflip.NA__chr8:1711465..1711579,-__847.1.0.0	8	21	-	7.89655	9.42e-05	0.0412	CGCCGCGCCCCGCC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	31	44	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	FLIPPED__Enhancer.flip.antisense__chr16:68271578..68271692,-__2860.1.0.0	42	55	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	48	61	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	48	61	+	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
KLF14	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	59	72	+	7.89655	9.42e-05	0.0412	CGCCGCGCCCCGCC
KLF14	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	59	72	+	7.89655	9.42e-05	0.0412	CGCCGCGCCCCGCC
KLF14	WILDTYPE__Enhancer.flip.sense__chr16:68271578..68271692,+__1872.1.0.0	60	73	-	7.89655	9.42e-05	0.0412	CGCCCCGCCCCGCG
RUNX1	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	9	19	+	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RUNX1	FLIPPED__mrna.flip.antisense__chr11:207356..207470,+__2534.1.0.0	3	13	-	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:207356..207470,-__1460.1.0.0	102	112	+	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	102	112	+	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RUNX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.0	102	112	+	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	102	112	+	10.8103	9.42e-05	0.298	GGCTGTGGCCG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	25	44	+	2.61468	9.42e-05	0.0764	CACACACACACGCGCACACA
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	25	44	+	2.61468	9.42e-05	0.0764	CACACACACACGCGCACACA
Zfx	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	32	45	+	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	32	45	+	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	38	51	+	9.9697	9.42e-05	0.0687	CCGCCCCGAGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	38	51	+	9.9697	9.42e-05	0.0687	CCGCCCCGAGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	38	51	+	9.9697	9.42e-05	0.0687	CCGCCCCGAGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	38	51	+	9.9697	9.42e-05	0.0687	CCGCCCCGAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.0.0	25	38	-	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832624..131832738,-__2200.1.1.0	25	38	-	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	50	63	-	9.9697	9.42e-05	0.0687	CGCGCCCCCGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	50	63	-	9.9697	9.42e-05	0.0687	CGCGCCCCCGCCTC
Zfx	FLIPPED__Enhancer.flip.antisense__chr5:131832624..131832738,+__2594.1.0.0	77	90	+	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
Zfx	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	70	83	-	9.9697	9.42e-05	0.0687	AGGGGCGGAGCCTG
GLI2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	62	73	+	9.68966	9.42e-05	0.331	GAGACCACCTTT
JUN(var.2)	WILDTYPE__Antisense.noflip.NA__chr2:70528456..70528570,+__444.1.0.0	45	58	+	10.4423	9.42e-05	0.25	AATCAATGACTCAA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	66	80	-	10.3944	9.42e-05	0.394	CCAAAAAAAAAAAAA
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr20:57463830..57463944,-__486.1.0.0	10	20	+	10.2909	9.42e-05	0.0718	AGCCCTGGGCG
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	37	47	+	10.2909	9.42e-05	0.0718	AGCCCTGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.2.0	55	65	+	10.2909	9.42e-05	0.0718	CGCCGTAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr7:1199731..1199845,-__1106.1.4.1	55	65	-	10.2909	9.42e-05	0.0718	GGCCTAAGGCC
TFAP2B(var.2)	WILDTYPE__Antisense.noflip.NA__chr3:42695845..42695959,-__579.1.0.0	73	83	-	10.2909	9.42e-05	0.0718	CCCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	89	99	-	10.2909	9.42e-05	0.0718	CCCCGCCGGCA
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	89	99	-	10.2909	9.42e-05	0.0718	CCCCGCCGGCA
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr20:57463830..57463944,+__2385.1.0.0	95	105	-	10.2909	9.42e-05	0.0718	AGCCCTGGGCG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:27068673..27068787,+__518.1.1.0	26	36	+	9.57377	9.42e-05	0.188	CACAGGAAGTC
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.1.0	27	37	-	9.57377	9.42e-05	0.188	AACAGGAAGGA
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046390..81046504,-__2232.1.0.0	27	37	-	9.57377	9.42e-05	0.188	AACAGGAAGGA
ETV2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.0.0	58	68	+	9.57377	9.42e-05	0.188	AACAGGAAGGA
ETV2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:81046410..81046524,+__1939.1.1.0	58	68	+	9.57377	9.42e-05	0.188	AACAGGAAGGA
ETV2	WILDTYPE__Lincrna.noflip.NA__chr22:27068708..27068822,+__519.1.0.0	84	94	+	9.57377	9.42e-05	0.188	CACAGGAAGTC
PAX5	FLIPPED__Lincrna.flip.antisense__chr7:65958634..65958748,-__2722.1.0.0	20	38	+	9.91935	9.42e-05	0.155	CTGACCGGCAGTCTGTGGC
PAX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	71	89	+	9.91935	9.42e-05	0.155	GGGGCCGGCGATGCGCGAG
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	71	89	+	9.91935	9.42e-05	0.155	GGGGCCGGCGATGCGCGAG
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	71	89	+	9.91935	9.42e-05	0.155	GGGGCCGGCGATGCGCGAG
PAX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	71	89	+	9.91935	9.42e-05	0.155	GGGGCCGGCGATGCGCGAG
PAX5	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	81	99	+	9.91935	9.42e-05	0.155	GGGGCCGGTCGGCCAGGGA
PAX5	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	16	34	-	9.91935	9.42e-05	0.155	GGGGCCGGTCGGCCAGGGA
PAX5	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:65958634..65958748,+__811.1.0.0	77	95	-	9.91935	9.42e-05	0.155	CTGACCGGCAGTCTGTGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	84	96	+	8.87931	9.42e-05	0.0579	GGCCTTGGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	84	96	+	8.87931	9.42e-05	0.0579	GGCCTTGGCGGCT
MEF2B	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	49	60	+	5.70909	9.42e-05	1	CCTTTTAATAGC
MEF2B	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	55	66	-	5.70909	9.42e-05	1	CCTTTTAATAGC
MEF2B	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	55	66	-	5.70909	9.42e-05	1	CCTTTTAATAGC
Six3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	41	57	+	9.69737	9.42e-05	1	GATTGGATATCCATTCG
Six3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	41	57	+	9.69737	9.42e-05	1	GATTGGATATCCATTCG
Six3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	41	57	+	9.69737	9.42e-05	1	GATTGGATATCCATTCG
Six3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	41	57	+	9.69737	9.42e-05	1	GATTGGATATCCATTCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.1.0	18	34	+	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
SP4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.1	18	34	+	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	18	34	+	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	18	34	+	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
SP4	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	32	48	+	2.56364	9.43e-05	0.0354	CTGCCCACCCCCACGCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	29	45	-	2.56364	9.43e-05	0.0354	CTGCCCACCCCCACGCT
SP4	WILDTYPE__mrna.flip.sense__chr11:118868768..118868882,+__1149.1.0.0	53	69	+	2.56364	9.43e-05	0.0354	TTAGCCCCACCCCGAGG
SP4	FLIPPED__mrna.flip.antisense__chr11:118868768..118868882,-__2774.1.0.0	46	62	-	2.56364	9.43e-05	0.0354	TTAGCCCCACCCCGAGG
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.0.0	52	68	-	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164494..155164608,+__1733.1.1.0	52	68	-	2.56364	9.43e-05	0.0354	CCCACCCCGCCCAGCGC
Tcf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	87	97	-	10.7347	9.43e-05	0.212	CACAGGTGCAA
Tcf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	87	97	-	10.7347	9.43e-05	0.212	CACAGGTGCAA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr8:95565879..95565993,+__883.1.0.0	3	12	-	10.0092	9.43e-05	0.0553	CCCCCCCTCT
ZNF740	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	40	49	+	10.0092	9.43e-05	0.0553	CCCCCCCTCT
ZNF740	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	66	75	-	10.0092	9.43e-05	0.0553	CCCCCCCTCT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	26	39	+	7.27869	9.43e-05	0.189	GGCCCCACGCTGCT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.1	26	39	+	7.27869	9.43e-05	0.189	GGCCCCACGCTGCT
GLIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.2.0	26	39	+	7.27869	9.43e-05	0.189	GGCCCCACGCTGCT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	26	39	+	7.27869	9.43e-05	0.189	GGCCCCACGCTGCT
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	4	15	+	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	30	41	-	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	42	53	+	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	42	53	+	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	42	53	+	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	41	52	-	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	41	52	-	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	41	52	-	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	41	52	-	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	53	64	+	10.7273	9.43e-05	0.0579	CGCCCCTCGGCG
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	73	84	+	10.7273	9.43e-05	0.0579	TGCCTCTGGGCT
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	62	73	-	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	74	85	+	10.7273	9.43e-05	0.0579	GGCCCTGAGGCC
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr11:695736..695850,+__1314.1.0.0	97	108	+	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	100	111	-	10.7273	9.43e-05	0.0579	GGCCCCGCGGCG
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	25	39	-	10.1154	9.43e-05	0.493	GGGCCACCCTGACTG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.0.0	25	39	-	10.1154	9.43e-05	0.493	GGGCCACCCTGACTG
ESR2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	65	79	+	10.1154	9.43e-05	0.493	GGGCCACCCTGACTG
ESR2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.0.0	65	79	+	10.1154	9.43e-05	0.493	GGGCCACCCTGACTG
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.0.0	75	89	-	10.1154	9.43e-05	0.493	AGGTCTCAATGACTC
ESR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.1	75	89	-	10.1154	9.43e-05	0.493	AGGTCTCAATGACTC
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131873149..131873263,+__1707.1.1.0	75	89	-	10.1154	9.43e-05	0.493	AGGTCTCAATGACTC
GLIS3	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	18	31	+	2.59091	9.43e-05	0.393	GGCGCCCCAGGAAG
GLIS3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	50	63	-	2.59091	9.43e-05	0.393	GCCCACCCACTAGG
GLIS3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	50	63	-	2.59091	9.43e-05	0.393	GCCCACCCACTAGG
GLIS3	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	84	97	-	2.59091	9.43e-05	0.393	GGCGCCCCAGGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	3	23	-	8.95918	9.43e-05	0.0236	TGGAGACAAAGGAGAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	38	58	-	8.95918	9.43e-05	0.0236	CGGAGAGGAGAGAGGAAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	38	58	-	8.95918	9.43e-05	0.0236	CGGAGAGGAGAGAGGAAGAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	80	100	-	8.95918	9.43e-05	0.0236	GAGGGAAAGGGGGAGGAGCAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	91	111	-	8.95918	9.43e-05	0.0236	GGGTGGGGGGAAAAGGGGAGG
ZNF263	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	4	24	+	8.95918	9.43e-05	0.0236	GGGTGGGGGGAAAAGGGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	40	60	+	8.95918	9.43e-05	0.0236	CGGAGAGGAGAGAGGAAGAGG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	40	60	+	8.95918	9.43e-05	0.0236	CGGAGAGGAGAGAGGAAGAGG
ZNF263	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	57	77	+	8.95918	9.43e-05	0.0236	CGGAGAGGAGAGAGGAAGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:61108734..61108848,+__1575.1.0.0	93	113	+	8.95918	9.43e-05	0.0236	AGGGCGGGAAGAAGGAGGAGG
TBR1	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	9	18	-	10.4894	9.43e-05	0.975	AAGTGAGAAA
TBR1	WILDTYPE__Lincrna.noflip.NA__chrX:70418008..70418122,-__942.1.0.0	47	56	+	10.4894	9.43e-05	0.975	AAGTGAGAAA
TBR1	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	97	106	+	10.4894	9.43e-05	0.975	AAGTGAGAAA
Rarb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	65	80	+	-5.72414	9.44e-05	1	CCGGGGTGAAGGGTCA
EGR1	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	7	20	-	9.53846	9.44e-05	0.0313	CCTTCTCCGCCTCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	22	35	-	9.53846	9.44e-05	0.0313	GTTCAACCCCCACC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	39	52	+	9.53846	9.44e-05	0.0313	CCGCCTCTCCCTTC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	39	52	+	9.53846	9.44e-05	0.0313	CCGCCTCTCCCTTC
EGR1	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	47	60	+	9.53846	9.44e-05	0.0313	CCCCTACCGACGCA
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	55	68	-	9.53846	9.44e-05	0.0313	CCCCTACCGACGCA
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	55	68	-	9.53846	9.44e-05	0.0313	CCCCTACCGACGCA
EGR1	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	95	108	+	9.53846	9.44e-05	0.0313	CCTTCTCCGCCTCC
KLF16	FLIPPED__mrna.flip.antisense__chr2:160568937..160569051,-__2785.1.0.0	3	13	+	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE__mrna.flip.sense__chr4:68566831..68566945,-__1203.1.0.0	34	44	+	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	35	45	+	9.86207	9.44e-05	0.0267	GGCCCTCCCAC
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:111804879..111804993,-__1210.1.1.0	44	54	+	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	53	63	+	9.86207	9.44e-05	0.0267	GCCCCCCCCTC
KLF16	FLIPPED__mrna.flip.antisense__chr4:68566831..68566945,+__2512.1.0.0	71	81	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	74	84	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.0.0	102	112	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.0	102	112	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.1.0	102	112	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:160568937..160569051,+__1176.1.2.1	102	112	-	9.86207	9.44e-05	0.0267	CGCCCGCCCCT
SREBF1	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	88	97	+	10.622	9.44e-05	0.472	CTCAGCCGAT
SOX4	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	98	113	+	-14.5758	9.44e-05	1	GAGCAATGTCAAGATT
SRF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.0.0	1	16	+	4.06557	9.44e-05	1	TGTCCAAACAAGGGTT
SRF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr4:122611996..122612110,-__2196.1.1.0	1	16	+	4.06557	9.44e-05	1	TGTCCAAACAAGGGTT
SRF	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	44	59	+	4.06557	9.44e-05	1	TGACTTTATAAGGCTG
SRF	WILDTYPE__Enhancer.noflip.NA__chr8:42398393..42398507,+__1823.1.0.0	95	110	-	4.06557	9.44e-05	1	TGACTTTATAAGGCTG
SRF	FLIPPED__Enhancer.flip.antisense__chr4:122611996..122612110,+__2593.1.0.0	99	114	-	4.06557	9.44e-05	1	TGTCCAAACAAGGGTT
Rarb(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	80	96	-	-3.86364	9.44e-05	0.861	AGGGCAGGGTGAGGTCT
RARA::RXRA	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:129862613..129862727,+__1745.1.1.1	98	114	-	9.04082	9.44e-05	0.405	AGTGCAGGCAGAGTGAA
Klf12	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	20	34	-	7.34426	9.44e-05	0.0731	GGCGAAGCCCTCCGT
PLAG1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	17	30	-	4.54082	9.44e-05	0.0782	AGGTGCCAGAGGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.0.0	17	30	-	4.54082	9.44e-05	0.0782	AGGTGCCAGAGGGG
PLAG1	WILDTYPE__mrna.noflip.NA__chr10:26727261..26727375,+__975.1.0.0	40	53	-	4.54082	9.44e-05	0.0782	GAGGGACTAAGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr15:44829030..44829144,+__2368.1.0.0	73	86	-	4.54082	9.44e-05	0.0782	GGGGCACAGGGGGC
PLAG1	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	23	36	+	4.54082	9.44e-05	0.0782	GAGGGACTAAGGTG
PLAG1	WILDTYPE__Antisense.flip.sense__chr15:44829030..44829144,-__319.1.0.0	29	42	+	4.54082	9.44e-05	0.0782	GGGGCACAGGGGGC
NFYA	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	6	23	+	8.31707	9.44e-05	0.225	TCCCGGCCCATTGGCTCC
NFYA	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	31	48	+	8.31707	9.44e-05	0.225	TGTGCGGTGATTGGGCCG
NFYA	WILDTYPE__Enhancer.noflip.NA__chr16:30645695..30645809,-__2294.1.0.0	19	36	-	8.31707	9.44e-05	0.225	TGTGCGGTGATTGGGCCG
NFYA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	26	43	-	8.31707	9.44e-05	0.225	TTCATTCTCATTGGAACG
NFYA	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	92	109	-	8.31707	9.44e-05	0.225	TCCCGGCCCATTGGCTCC
INSM1	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	50	61	-	8.83673	9.44e-05	0.203	GGGAAGGGGCAG
ESR1	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	10	26	+	-1.69697	9.44e-05	0.514	GCGGGCACTCTGACAGT
ESR1	WILDTYPE__Enhancer.noflip.NA__chr6:11323947..11324061,-__2104.1.0.0	26	42	+	-1.69697	9.44e-05	0.514	CAGGACGCCAGGACCTT
BATF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	7	20	-	-0.484848	9.44e-05	0.265	GGGTTACGTCACCA
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	7	20	-	-0.484848	9.44e-05	0.265	GGGTTACGTCACCA
BATF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	7	20	-	-0.484848	9.44e-05	0.265	GGGTTACGTCACCA
BATF3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	7	20	-	-0.484848	9.44e-05	0.265	GGGTTACGTCACCA
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	7	16	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.0	12	21	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:94124143..94124257,-__1239.1.2.1	12	21	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.1.0	20	29	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.0	20	29	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.0.0	20	29	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:34697198..34697312,+__1587.1.2.1	20	29	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr3:106959485..106959599,+__539.1.0.0	30	39	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	34	43	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	37	46	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	37	46	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	29	38	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	77	86	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	77	86	+	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr16:30645743..30645857,+__2001.1.0.0	70	79	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	72	81	-	10.1154	9.44e-05	0.306	CGCACGCGCC
BHLHE40	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	99	108	+	10.1154	9.44e-05	0.306	CGCACGCGCC
TBP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	42	56	-	10.7083	9.44e-05	0.737	CTTTAAAGGGGCCGG
TBP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	42	56	-	10.7083	9.44e-05	0.737	CTTTAAAGGGGCCGG
TBP	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	59	73	+	10.7083	9.44e-05	0.737	CTTTAAAGGGGCCGG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	41	52	+	10.6837	9.45e-05	0.0876	CCCCCGCAGGGA
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:139743782..139743896,+__1262.1.0.0	65	82	+	-16.1316	9.45e-05	0.0558	GGTCGGGTGGGAGGAGGG
NFIC::TLX1	WILDTYPE__Lincrna.noflip.NA__chr7:35840191..35840305,-__806.1.0.0	73	86	-	4.08163	9.45e-05	0.382	TTGCCTTACGCCAA
Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	25	32	+	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	25	32	+	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	25	32	+	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	78	85	+	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE__Enhancer.flip.sense__chr1:198625661..198625775,-__2124.1.0.0	82	89	+	12.6066	9.45e-05	1	CCATTGTG
Sox2	FLIPPED__Enhancer.flip.antisense__chr1:198625661..198625775,+__2553.1.0.0	26	33	-	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	61	68	-	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	61	68	-	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE__Antisense.noflip.NA__chr10:96990853..96990967,-__145.1.0.0	85	92	-	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	88	95	-	12.6066	9.45e-05	1	CCATTGTG
Sox2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	88	95	-	12.6066	9.45e-05	1	CCATTGTG
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	25	44	+	2.6055	9.45e-05	0.0764	CACGCACACACGCGCACACA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	25	44	+	2.6055	9.45e-05	0.0764	CACGCACACACGCGCACACA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	11	25	-	8.57143	9.45e-05	0.122	CTGGGGCAGGGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	11	25	-	8.57143	9.45e-05	0.122	CTGGGGCAGGGGCGG
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.1.0	42	56	+	8.57143	9.45e-05	0.122	CAGCGTCAGAGGCGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	42	56	+	8.57143	9.45e-05	0.122	CAGCGTCAGAGGCGG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.0.0	18	27	+	10.9194	9.45e-05	0.839	CAAATTCCTG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:16508454..16508568,-__2223.1.1.0	18	27	+	10.9194	9.45e-05	0.839	CAAATTCCTG
TEAD4	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	44	53	-	10.9194	9.45e-05	0.839	CAAATTCCTG
RFX3	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	99	114	-	8.5	9.45e-05	0.429	TGTTTCTAAAGCAGCC
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	3	17	-	5.31034	9.45e-05	0.0418	GTGCGCCCCCACAGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	5	19	-	5.31034	9.45e-05	0.0418	CCACTCCCATGCATG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	5	19	-	5.31034	9.45e-05	0.0418	CCACTCCCATGCATG
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	5	19	-	5.31034	9.45e-05	0.0418	CCACTCCCATGCATG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	5	19	-	5.31034	9.45e-05	0.0418	CCACTCCCATGCATG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.0.0	14	28	-	5.31034	9.45e-05	0.0418	CTCCGCCCAGCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	14	28	-	5.31034	9.45e-05	0.0418	CTCCGCCCAGCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.0.0	56	70	+	5.31034	9.45e-05	0.0418	CCCCGCCCGCCCGGT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	57	71	-	5.31034	9.45e-05	0.0418	CTCCGCCCAGCCGCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	57	71	-	5.31034	9.45e-05	0.0418	CTCCGCCCAGCCGCC
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.1.0	31	46	+	5.77586	9.45e-05	0.405	TGTCACTGTGGGAACT
RFX5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.0.0	31	46	+	5.77586	9.45e-05	0.405	TGTCACTGTGGGAACT
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.2.0	31	46	+	5.77586	9.45e-05	0.405	TGTCACTGTGGGAACT
RFX5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.0	31	46	+	5.77586	9.45e-05	0.405	TGTCACTGTGGGAACT
RFX5	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr7:142198030..142198144,-__785.1.3.1	31	46	+	5.77586	9.45e-05	0.405	TGTCACTGTGGGAACT
ID4	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	16	25	-	10.4262	9.45e-05	0.389	GCCACCTGCT
ID4	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	65	74	+	10.4262	9.45e-05	0.389	GCCACCTGCT
ID4	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	93	102	+	10.4262	9.45e-05	0.389	GCCACCTGCT
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	9	18	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	9	18	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	9	18	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	9	18	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	9	18	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	9	18	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	9	18	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	9	18	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	9	18	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	9	18	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	36	45	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	36	45	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	50	59	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	50	59	+	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	50	59	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	50	59	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	50	59	-	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	50	59	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	63	72	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	63	72	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	63	72	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	63	72	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	70	79	+	9.81452	9.45e-05	0.0517	GGCGCGAGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	63	72	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.0.0	63	72	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	63	72	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	63	72	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	70	79	-	9.81452	9.45e-05	0.0517	GCCTCGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	105	114	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	105	114	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	105	114	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	105	114	+	9.81452	9.45e-05	0.0517	GGCTCGCGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	105	114	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	105	114	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	105	114	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	105	114	-	9.81452	9.45e-05	0.0517	GCCGCGAGCC
CEBPE	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	65	74	+	10.9636	9.45e-05	0.806	GTTACGTAAT
NFKB1	WILDTYPE__mrna.flip.sense__chr4:183065036..183065150,+__1198.1.0.0	15	27	+	0.857143	9.45e-05	0.268	CGGTGCTTTCCCG
NFKB1	FLIPPED__mrna.flip.antisense__chr4:183065036..183065150,-__2795.1.0.0	88	100	-	0.857143	9.45e-05	0.268	CGGTGCTTTCCCG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	78	90	-	10.898	9.45e-05	0.202	CCCAGCTGTGTGA
TFAP2B(var.3)	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	15	27	+	8.98361	9.45e-05	0.0652	CCCCCGCCCGGCA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	29	41	-	8.98361	9.45e-05	0.0652	TCCCTGGGAGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	29	41	-	8.98361	9.45e-05	0.0652	TCCCTGGGAGGGA
TFAP2B(var.3)	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	88	100	-	8.98361	9.45e-05	0.0652	CCCCCGCCCGGCA
Nr2f6	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	67	80	+	7.92424	9.45e-05	0.486	AGCGCCCAAGGTCA
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	30	48	+	7.90164	9.45e-05	0.135	ACGCCGCCGGGTGGGGCTA
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	3	20	+	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	3	20	+	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
KLF13	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	55	72	+	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
KLF13	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	43	60	-	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
KLF13	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	43	60	-	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
KLF13	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	95	112	-	3.44828	9.45e-05	0.352	CGCCCACGCCCCTTTCGC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	65	77	-	7.32759	9.45e-05	0.195	TAACAGGAAGCAG
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	65	77	-	7.32759	9.45e-05	0.195	TAACAGGAAGCAG
HOXD12	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	83	93	-	10.1639	9.45e-05	1	GGCCGTTAAAC
NFATC1	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	80	89	+	10.3902	9.45e-05	1	AGTTTCCGTC
Gfi1	WILDTYPE__Lincrna.noflip.NA__chr21:22175370..22175484,-__498.1.0.0	62	71	-	10.7317	9.45e-05	0.652	AAAATCACAC
ETV4	WILDTYPE__mrna.noflip.NA__chr1:173793248..173793362,-__958.1.0.0	17	26	+	11.069	9.46e-05	0.136	AGCGGAAATG
ETV4	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	46	55	-	11.069	9.46e-05	0.136	AGCGGAAATG
Klf1	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	63	73	+	10.0909	9.46e-05	0.0595	GACCTCACCCT
Klf1	WILDTYPE__Antisense.noflip.NA__chr7:151106242..151106356,+__787.1.0.0	81	91	+	10.0909	9.46e-05	0.0595	GACCTCACCCT
ZIC3	WILDTYPE__Lincrna.noflip.NA__chr10:8095404..8095518,-__140.1.0.0	32	46	+	7.21429	9.46e-05	0.127	TCCGCCCCGCGGGTT
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	23	35	-	9.45902	9.46e-05	0.0589	CGCCTTAAAGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	36	48	-	9.45902	9.46e-05	0.0589	TCCCGGCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	36	48	-	9.45902	9.46e-05	0.0589	TCCCGGCCGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.0.0	37	49	-	9.45902	9.46e-05	0.0589	CGCCCGGCCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr6:19804948..19805062,-__741.1.1.0	37	49	-	9.45902	9.46e-05	0.0589	CGCCCGGCCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	71	83	-	9.45902	9.46e-05	0.0589	TCCCGGCCGGGCC
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	71	83	-	9.45902	9.46e-05	0.0589	TCCCGGCCGGGCC
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	13	24	+	10.6909	9.46e-05	0.0953	TGCCCGGGGGGC
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	17	28	+	10.6909	9.46e-05	0.0953	CCCCCTCAGCCA
TFAP2B	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	96	107	+	10.6909	9.46e-05	0.0953	AGCCCAGAGGCT
TFAP2B	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	66	77	-	10.6909	9.46e-05	0.0953	AGCCCGAGGCCT
ELK4	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	37	47	-	10.5818	9.46e-05	0.0789	TCATTTCCTGG
ELK4	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	68	78	+	10.5818	9.46e-05	0.0789	TCATTTCCTGG
NFKB2	WILDTYPE__Antisense.noflip.NA__chr6:99872715..99872829,+__762.1.0.0	56	68	+	7.19697	9.46e-05	0.265	AGGGGGTTCCCAC
CEBPG	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.1.0	73	82	-	9.81633	9.46e-05	0.906	GTTGCGCAAA
CEBPG	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52268970..52269084,-__2253.1.0.0	73	82	-	9.81633	9.46e-05	0.906	GTTGCGCAAA
INSM1	WILDTYPE__Antisense.noflip.NA__chr4:85887872..85887986,+__649.1.0.0	22	33	-	8.82653	9.46e-05	0.203	TTTCTGCGGCCG
POU2F1	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	28	39	+	10.63	9.46e-05	1	GAGATGCAAATG
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	8	18	+	9.65455	9.46e-05	0.257	TCTGAGTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	8	18	+	9.65455	9.46e-05	0.257	TCTGAGTCACA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr7:44677823..44677937,-__2114.1.0.0	50	60	+	9.65455	9.46e-05	0.257	TCTGAGTCACA
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	45	55	-	9.65455	9.46e-05	0.257	TCTGAGTCACA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	45	55	-	9.65455	9.46e-05	0.257	TCTGAGTCACA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr7:44677809..44677923,+__1821.1.0.0	69	79	-	9.65455	9.46e-05	0.257	TCTGAGTCACA
HLTF	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.2.1	23	32	+	8.62195	9.46e-05	1	AAACTTATCT
HLTF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:65730122..65730236,-__1726.1.1.0	23	32	+	8.62195	9.46e-05	1	AAACTTATCT
HLTF	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	45	54	+	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	99	108	+	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	7	16	-	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	7	16	-	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	7	16	-	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	7	16	-	8.62195	9.46e-05	1	GCCCTTATCC
HLTF	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	61	70	-	8.62195	9.46e-05	1	GCCCTTATCC
ZIC4	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	27	41	-	9.69091	9.46e-05	0.114	AACCCCCTGGCGCCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr15:67351517..67351631,-__328.1.0.0	28	42	-	9.69091	9.46e-05	0.114	GCCCGCCCACAGCCC
ZIC4	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	74	88	+	9.69091	9.46e-05	0.114	AACCCCCTGGCGCCC
EBF1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	65	78	+	8.2459	9.46e-05	0.37	CCACCCCGGGGACA
Twist2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	3	12	+	11.3279	9.47e-05	1	AACATGTGTG
Twist2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	95	104	-	11.3279	9.47e-05	1	AACATGTGTG
HINFP	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	48	59	-	10.0152	9.47e-05	0.111	GGGCCTCCGCGC
HINFP	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	81	92	-	10.0152	9.47e-05	0.111	GAAGCTCCGCGG
NRF1	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	13	23	+	9.16364	9.47e-05	0.025	GCACCTGTGCC
NRF1	WILDTYPE__Antisense.flip.sense__chr21:34100346..34100460,+__500.1.0.0	6	16	-	9.16364	9.47e-05	0.025	GCCGCGGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:22033372..22033486,-__1255.1.0.0	24	34	+	9.16364	9.47e-05	0.025	CCGGCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.0.0	25	35	+	9.16364	9.47e-05	0.025	CCGGCGGCGCC
NRF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	25	35	+	9.16364	9.47e-05	0.025	CCGGCGGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.0.0	23	33	-	9.16364	9.47e-05	0.025	GCCGCGGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144450700..144450814,-__845.1.1.0	23	33	-	9.16364	9.47e-05	0.025	GCCGCGGCGCA
NRF1	FLIPPED__Antisense.flip.antisense__chr14:56046793..56046907,+__2364.1.0.0	80	90	-	9.16364	9.47e-05	0.025	CCGGCGGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr21:34100346..34100460,-__2679.1.0.0	99	109	+	9.16364	9.47e-05	0.025	GCCGCGGCGCA
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	92	102	-	9.16364	9.47e-05	0.025	GCACCTGTGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	92	102	-	9.16364	9.47e-05	0.025	GCACCTGTGCC
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	92	102	-	9.16364	9.47e-05	0.025	GCACCTGTGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	92	102	-	9.16364	9.47e-05	0.025	GCACCTGTGCC
ELF1	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	97	108	+	8	9.47e-05	0.137	CAGCCGGAAACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	83	93	-	10.3061	9.47e-05	0.239	GTCAGATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903818..60903932,-__2178.1.1.0	59	69	+	10.3061	9.47e-05	0.239	GTCAGATGACC
FOS	WILDTYPE__Enhancer.noflip.NA__chr5:71643717..71643831,-__2206.1.0.0	25	35	-	10.766	9.47e-05	0.285	TATGAATCATC
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	13	22	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	27	36	+	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	24	33	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	FLIPPED__Antisense.flip.antisense__chr1:156631197..156631311,+__2323.1.0.0	43	52	+	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	47	56	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	47	56	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	47	56	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	47	56	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE__Antisense.flip.sense__chr1:156631197..156631311,-__24.1.0.0	63	72	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	82	91	+	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	82	91	+	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	88	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	88	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	88	-	10.4681	9.47e-05	0.141	CCCGGAAACG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	88	-	10.4681	9.47e-05	0.141	CCCGGAAACG
ONECUT1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	47	60	-	8.78846	9.47e-05	1	ACCCAATCAATACA
ONECUT1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	47	60	-	8.78846	9.47e-05	1	ACCCAATCAATACA
ONECUT1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	47	60	-	8.78846	9.47e-05	1	ACCCAATCAATACA
NFYB	WILDTYPE__Antisense.noflip.NA__chr1:120838297..120838411,-__12.1.0.0	30	44	-	9.75	9.47e-05	0.238	CCCTTTACCAATCAC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	38	52	+	10.3153	9.47e-05	0.19	GGGGGGCAGGGTTAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	38	52	+	10.3153	9.47e-05	0.19	GGGGGGCAGGGTTAA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	38	52	+	10.3153	9.47e-05	0.19	GGGGGGCAGGGTTAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	38	52	+	10.3153	9.47e-05	0.19	GGGGGGCAGGGTTAA
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	6	18	-	8.86207	9.47e-05	0.0579	CCCCCTGAAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	40	52	+	8.86207	9.47e-05	0.0579	CCCCCTGAAGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	40	52	+	8.86207	9.47e-05	0.0579	CCCCCTGAAGGGC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	63	75	-	8.86207	9.47e-05	0.0579	CCCCCTGAAGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	84	96	+	8.86207	9.47e-05	0.0579	GGCCTTCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	84	96	+	8.86207	9.47e-05	0.0579	GGCCTTCGCGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	84	96	+	8.86207	9.47e-05	0.0579	GGCCTTCGCGGCT
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	97	109	+	8.86207	9.47e-05	0.0579	CCCCCTGAAGGGC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	91	103	-	8.86207	9.47e-05	0.0579	CCCCGGCGGGGGA
STAT1::STAT2	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	64	78	+	8.78788	9.47e-05	0.358	GTACTTCCGCTTCCT
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	23	36	-	4.53061	9.47e-05	0.0782	TGGGGCCTGTGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	23	36	-	4.53061	9.47e-05	0.0782	TGGGGCCTGTGGGA
PLAG1	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	40	53	-	4.53061	9.47e-05	0.0782	GGTGGCCTGTGGGA
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	47	60	+	4.53061	9.47e-05	0.0782	TGGGGCCTGTGGGA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	47	60	+	4.53061	9.47e-05	0.0782	TGGGGCCTGTGGGA
HOXB13	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	48	57	+	10.8	9.47e-05	1	CTTATAAAAA
HOXB13	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	48	57	+	10.8	9.47e-05	1	CTTATAAAAA
HOXB13	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	48	57	+	10.8	9.47e-05	1	CTTATAAAAA
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.1.0	24	33	-	11.697	9.47e-05	0.36	CACACGTGAT
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	52	69	+	-11.2424	9.47e-05	1	GGAGTAAAAAGGACAAAC
RARA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	10	27	-	-11.2424	9.47e-05	1	GGAGTAAAAAGGACAAAC
ZBED1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.0.0	14	26	-	4.8	9.47e-05	1	CTGTCGCGCCTGG
ZBED1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:37079834..37079948,+__908.1.1.0	14	26	-	4.8	9.47e-05	1	CTGTCGCGCCTGG
Tcf21	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	54	67	+	5.18421	9.47e-05	0.574	GGAAAAGCTGTTTC
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.0.0	15	29	+	9.63793	9.47e-05	0.0191	CTCCTTCCCCTGCCC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	13	27	-	9.63793	9.47e-05	0.0191	ACTCCGCCCACGAGG
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	13	27	-	9.63793	9.47e-05	0.0191	ACTCCGCCCACGAGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	13	27	-	9.63793	9.47e-05	0.0191	ACTCCGCCCACGAGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	13	27	-	9.63793	9.47e-05	0.0191	ACTCCGCCCACGAGG
SP2	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	41	55	+	9.63793	9.47e-05	0.0191	CTCCTTCCCCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	53	67	+	9.63793	9.47e-05	0.0191	TCCGCGCCCCCACGC
SP2	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	48	62	-	9.63793	9.47e-05	0.0191	TCCGCGCCCCCACGC
SP2	WILDTYPE__Antisense.noflip.NA__chr3:150421249..150421363,+__554.1.0.0	50	64	-	9.63793	9.47e-05	0.0191	AGCCCACCCTCCAGC
SP2	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	60	74	-	9.63793	9.47e-05	0.0191	CTCCTTCCCCTGCCC
SP2	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	88	102	+	9.63793	9.47e-05	0.0191	ACTCCGCCCACGAGG
SP4	WILDTYPE__Antisense.flip.sense__chr12:93965509..93965623,-__259.1.0.0	37	53	-	2.54545	9.47e-05	0.0355	GACGCCCCTCCTCTCCC
SP4	FLIPPED__Antisense.flip.antisense__chr12:93965509..93965623,+__2356.1.0.0	62	78	+	2.54545	9.47e-05	0.0355	GACGCCCCTCCTCTCCC
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	32	42	+	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	35	45	+	10.0962	9.47e-05	0.0215	ATTCCTCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	40	50	+	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
SP1	WILDTYPE__Antisense.noflip.NA__chr3:64670485..64670599,+__587.1.0.0	37	47	-	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
SP1	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	47	57	-	10.0962	9.47e-05	0.0215	ATTCCTCCCCT
SP1	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	58	68	+	10.0962	9.47e-05	0.0215	ATTCCTCCCCT
SP1	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	59	69	-	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
SP1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	65	75	-	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	70	80	-	10.0962	9.47e-05	0.0215	ATTCCTCCCCT
SP1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	73	83	-	10.0962	9.47e-05	0.0215	ACTCCTCCTCT
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	95	107	-	8.88525	9.47e-05	0.744	GCATGAAGCAACC
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	95	107	-	8.88525	9.47e-05	0.744	GCATGAAGCAACC
Rhox11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.1.0	34	50	-	10.6447	9.47e-05	1	AGGTAGCTGTACTGCAA
Rhox11	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.0.0	34	50	-	10.6447	9.47e-05	1	AGGTAGCTGTACTGCAA
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.1	34	50	-	10.6447	9.47e-05	1	AGGTAGCTGTACTGCAA
Rhox11	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6565702..6565816,-__866.1.2.0	34	50	-	10.6447	9.47e-05	1	AGGTAGCTGTACTGCAA
Rhox11	FLIPPED__Antisense.flip.antisense__chr8:6565702..6565816,+__2437.1.0.0	65	81	+	10.6447	9.47e-05	1	AGGTAGCTGTACTGCAA
Mlxip	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	5	12	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	6	13	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	6	13	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	13	20	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	15	22	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	19	26	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	19	26	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	19	26	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	19	26	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	20	27	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	20	27	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	20	27	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	13	20	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	20	27	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	20	27	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	15	22	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	15	22	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	15	22	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	15	22	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	16	23	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	16	23	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	28	35	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	31	38	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	31	38	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	24	31	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	36	43	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	32	39	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__mrna.flip.antisense__chr3:184529904..184530018,-__2754.1.0.0	42	49	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	46	53	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	46	53	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	46	53	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	46	53	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	49	56	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	49	56	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	49	56	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	49	56	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	49	56	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	50	57	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	50	57	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	43	50	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	51	58	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	51	58	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	47	54	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	50	57	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	50	57	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	50	57	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	50	57	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	53	60	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	53	60	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	63	70	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	63	70	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	65	72	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	62	69	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.0.0	66	73	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.1.0	66	73	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.0	66	73	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:184529904..184530018,+__1073.1.2.1	66	73	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	76	83	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	80	87	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	98	105	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	96	103	-	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	103	110	+	12.0164	9.47e-05	0.275	CCACGTGA
Mlxip	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	102	109	-	12.0164	9.47e-05	0.275	CCACGTGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	14	24	+	9.94828	9.47e-05	0.0524	CCGCGGGGGGG
E2F4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.1.0	89	99	-	9.94828	9.47e-05	0.0524	TGGCGGCAAGA
E2F4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:135777593..135777707,+__784.1.0.0	89	99	-	9.94828	9.47e-05	0.0524	TGGCGGCAAGA
EHF	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	44	55	+	9.4918	9.48e-05	0.149	GATCCGGAAGAG
EHF	WILDTYPE__Enhancer.noflip.NA__chr9:137264735..137264849,-__2119.1.0.0	63	74	+	9.4918	9.48e-05	0.149	AACCAGGAAGGC
SP8	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	6	17	-	10.25	9.48e-05	0.0395	GCCTCTCCCCCC
SP8	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	17	28	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	21	32	-	10.25	9.48e-05	0.0395	ACCCCTCCTACT
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	30	41	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	39	50	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	39	50	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	39	50	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE__mrna.flip.sense__chr22:17640132..17640246,-__1187.1.0.0	57	68	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	62	73	-	10.25	9.48e-05	0.0395	GCCTCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	62	73	-	10.25	9.48e-05	0.0395	GCCTCGCCCCTC
SP8	FLIPPED__mrna.flip.antisense__chr15:49913077..49913191,-__2818.1.0.0	83	94	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	FLIPPED__Antisense.flip.antisense__chr22:17640167..17640281,-__2682.1.0.0	92	103	-	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	5	16	+	10.25	9.48e-05	0.0395	GCCTCGCCCCTC
SP8	WILDTYPE__Antisense.flip.sense__chr22:17640167..17640281,+__512.1.0.0	12	23	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.0.0	21	32	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.0	21	32	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.1.0	21	32	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	27	38	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	34	45	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	34	45	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	FLIPPED__mrna.flip.antisense__chr22:17640132..17640246,+__2502.1.0.0	47	58	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	56	67	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	58	69	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
SP8	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	87	98	+	10.25	9.48e-05	0.0395	CCCCCCCCCCGC
RFX4	WILDTYPE__Enhancer.noflip.NA__chr10:81081021..81081135,-__2043.1.0.0	21	36	-	9.19697	9.48e-05	0.414	AGTCACCATGATTGCT
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.0.0	27	37	+	10.9455	9.48e-05	0.159	TTGCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851837..27851951,+__1570.1.1.0	27	37	+	10.9455	9.48e-05	0.159	TTGCGGAAGTT
ELF5	FLIPPED__mrna.flip.antisense__chr2:27851832..27851946,+__2537.1.0.0	32	42	+	10.9455	9.48e-05	0.159	TTGCGGAAGTT
ELF5	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	70	80	+	10.9455	9.48e-05	0.159	ATCAGGAAATG
ELF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.0.0	73	83	-	10.9455	9.48e-05	0.159	TTGCGGAAGTT
ELF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:27851832..27851946,-__1569.1.1.0	73	83	-	10.9455	9.48e-05	0.159	TTGCGGAAGTT
ELF5	FLIPPED__mrna.flip.antisense__chr2:27851837..27851951,-__2821.1.0.0	78	88	-	10.9455	9.48e-05	0.159	TTGCGGAAGTT
IRF9	WILDTYPE__Antisense.noflip.NA__chr14:75725980..75726094,+__302.1.0.0	54	68	-	-4.12727	9.48e-05	0.734	ACCAAAACAGCAACA
LEF1	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	60	74	-	7.79032	9.48e-05	1	AAAAATGAAAGTGAT
MAFF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.1	50	67	+	10.2444	9.48e-05	0.965	TAAGAGTCAGCACCAAGG
MAFF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.0.0	50	67	+	10.2444	9.48e-05	0.965	TAAGAGTCAGCACCAAGG
MAFF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:81391669..81391783,+__1503.1.1.0	50	67	+	10.2444	9.48e-05	0.965	TAAGAGTCAGCACCAAGG
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.0.0	73	84	-	8.81633	9.48e-05	0.203	TGTCTGGGCGCG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287212..44287326,+__1954.1.1.0	73	84	-	8.81633	9.48e-05	0.203	TGTCTGGGCGCG
Hmx2	WILDTYPE__Enhancer.flip.sense__chr9:36731697..36731811,+__1926.1.0.0	38	54	-	10.1184	9.48e-05	1	GTGAGCAATCAACTGTT
Hmx2	FLIPPED__Enhancer.flip.antisense__chr9:36731697..36731811,-__2889.1.0.0	61	77	+	10.1184	9.48e-05	1	GTGAGCAATCAACTGTT
HSF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.1.0	11	23	+	5.96721	9.48e-05	1	TTCTGGAACAAAC
HSF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:60903781..60903895,+__1885.1.0.0	11	23	+	5.96721	9.48e-05	1	TTCTGGAACAAAC
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr2:105050738..105050852,+__388.1.0.0	80	91	+	10.2581	9.48e-05	1	ATATGCAAAGCA
HOXA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	18	27	-	10.1509	9.48e-05	1	GCCCATTACC
HOXA2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	18	27	-	10.1509	9.48e-05	1	GCCCATTACC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	19	32	+	7.87931	9.48e-05	0.0413	TGTCGCGCCCAATC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	19	32	+	7.87931	9.48e-05	0.0413	TGTCGCGCCCAATC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.1.0	47	60	-	7.87931	9.48e-05	0.0413	GCGCGCGCCCCCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144679754..144679868,-__1689.1.0.0	47	60	-	7.87931	9.48e-05	0.0413	GCGCGCGCCCCCCC
HLF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	46	57	+	11.0678	9.48e-05	1	CATTGCATAATG
HLF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	46	57	+	11.0678	9.48e-05	1	CATTGCATAATG
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.0.0	28	37	+	11.0732	9.48e-05	0.199	ATCACGCGAG
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.1	28	37	+	11.0732	9.48e-05	0.199	ATCACGCGAG
TFEC	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:52811806..52811920,+__858.1.1.0	28	37	+	11.0732	9.48e-05	0.199	ATCACGCGAG
TFEC	FLIPPED__Lincrna.flip.antisense__chr8:52811806..52811920,-__2728.1.0.0	78	87	-	11.0732	9.48e-05	0.199	ATCACGCGAG
Zfx	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.1.0	18	31	+	9.95455	9.48e-05	0.0687	CCCGCCCCCGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:45595258..45595372,+__507.1.0.0	18	31	+	9.95455	9.48e-05	0.0687	CCCGCCCCCGCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.1.0	27	40	+	9.95455	9.48e-05	0.0687	CCCGCCCCCGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:237076010..237076124,+__425.1.0.0	27	40	+	9.95455	9.48e-05	0.0687	CCCGCCCCCGCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	90	103	+	9.95455	9.48e-05	0.0687	GAGGCTGTGGCCTT
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.1.0	98	111	+	9.95455	9.48e-05	0.0687	CTCTGCCTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720294..30720408,+__1975.1.0.0	98	111	+	9.95455	9.48e-05	0.0687	CTCTGCCTGGCCTG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	3	20	+	-16.1447	9.48e-05	0.0559	GAGGAGGGGGGAGGAGGA
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	88	105	-	-16.1447	9.48e-05	0.0559	GGATTGGGGTGAGGAAGG
IRF1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	24	44	-	8.09677	9.48e-05	0.19	CTTTTTTTTTTTTTTCCTCTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr2:97151771..97151885,+__1998.1.0.0	52	72	+	8.09677	9.48e-05	0.19	CCCTGGTTGCAGTTCTACTTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr10:54215018..54215132,-__129.1.0.0	45	65	-	8.09677	9.48e-05	0.19	CTGCACTTGCTTTTTCTGCTC
IRF1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	71	91	+	8.09677	9.48e-05	0.19	CTTTTTTTTTTTTTTCCTCTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	65	85	-	8.09677	9.48e-05	0.19	CCCTGGTTGCAGTTCTACTTT
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	16	25	-	8.47959	9.48e-05	0.277	GTGGCTTCCC
RELA	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	16	25	-	8.47959	9.48e-05	0.277	GTGGCTTCCC
RELA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	16	25	-	8.47959	9.48e-05	0.277	GTGGCTTCCC
RELA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	16	25	-	8.47959	9.48e-05	0.277	GTGGCTTCCC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	29	39	+	9.84483	9.48e-05	0.0268	GCCCTGCCCAC
KLF16	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	38	48	-	9.84483	9.48e-05	0.0268	GCCCTGCCCAC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	66	76	+	9.84483	9.48e-05	0.0268	GCCCTGCCCAC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	66	76	+	9.84483	9.48e-05	0.0268	GCCCTGCCCAC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	17	27	+	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	17	27	+	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	17	27	+	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr3:128208083..128208197,+__545.1.0.0	66	76	+	10.5366	9.48e-05	0.0283	CCCCCTCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	76	86	+	10.5366	9.48e-05	0.0283	CCCCCTCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	76	86	+	10.5366	9.48e-05	0.0283	CCCCCTCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	12	22	-	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	12	22	-	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	12	22	-	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	12	22	-	10.5366	9.48e-05	0.0283	GGCCCACCCCC
SP3	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	88	98	-	10.5366	9.48e-05	0.0283	GGCCCACCCCC
Bach1::Mafk	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	29	43	+	6.28947	9.48e-05	0.297	AGTGAGAGTCAGCCC
FOXC2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.0.0	2	13	+	10.8911	9.48e-05	1	TATGAAAATAAA
FOXC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.0	2	13	+	10.8911	9.48e-05	1	TATGAAAATAAA
FOXC2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.1.0	2	13	+	10.8911	9.48e-05	1	TATGAAAATAAA
FOXC2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:180708287..180708401,+__682.1.2.1	2	13	+	10.8911	9.48e-05	1	TATGAAAATAAA
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	27	36	-	9.94545	9.48e-05	0.655	CCCAGCTGAG
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	27	36	-	9.94545	9.48e-05	0.655	CCCAGCTGAG
TFAP4	WILDTYPE__Antisense.noflip.NA__chr14:81636708..81636822,-__305.1.0.0	69	78	-	9.94545	9.48e-05	0.655	CCCAGCTGAG
TFAP4	WILDTYPE__mrna.noflip.NA__chr9:130853654..130853768,+__1122.1.0.0	94	103	-	9.94545	9.48e-05	0.655	TTCAGCTGTC
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	13	24	+	9.74138	9.48e-05	0.365	TCACCCACCCAC
Mafb	WILDTYPE__mrna.noflip.NA__chr14:102290113..102290227,+__1016.1.0.0	60	71	-	10.7865	9.48e-05	0.891	AAAAAGCTGAGA
Nfe2l2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.1.0	31	45	+	9	9.48e-05	0.368	TAAACTGACATAGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410614..75410728,-__2245.1.0.0	31	45	+	9	9.48e-05	0.368	TAAACTGACATAGCA
NR3C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	9	25	+	3.74468	9.48e-05	1	GGGGACCCCCTGTGCCT
NR3C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	9	25	+	3.74468	9.48e-05	1	GGGGACCCCCTGTGCCT
E2F6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	99	109	+	10.1724	9.48e-05	0.0878	GCGTGGGAAAC
E2F6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	99	109	+	10.1724	9.48e-05	0.0878	GCGTGGGAAAC
NFYA	WILDTYPE__Antisense.flip.sense__chr4:775602..775716,-__644.1.0.0	14	31	+	8.30488	9.49e-05	0.225	GCCGACATGATTGGCTCC
NFYA	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	24	41	+	8.30488	9.49e-05	0.225	TGCGGCCTGACTGGCGCA
NFYA	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	74	91	-	8.30488	9.49e-05	0.225	TGCGGCCTGACTGGCGCA
NFYA	FLIPPED__Antisense.flip.antisense__chr4:775602..775716,+__2400.1.0.0	84	101	-	8.30488	9.49e-05	0.225	GCCGACATGATTGGCTCC
NFYA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	93	110	-	8.30488	9.49e-05	0.225	GCTGGCCTCATTGGCTCA
NFYA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	93	110	-	8.30488	9.49e-05	0.225	GCTGGCCTCATTGGCTCA
BHLHE41	WILDTYPE__Lincrna.noflip.NA__chr10:61513178..61513292,-__133.1.0.0	22	31	+	7.25	9.49e-05	0.235	CTCCCGTGAC
BHLHE41	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	48	57	+	7.25	9.49e-05	0.235	CTCCCGTGAC
Gata1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	61	71	+	10.7143	9.49e-05	1	TTTTTATCAGT
Gata1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	61	71	+	10.7143	9.49e-05	1	TTTTTATCAGT
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	61	71	+	10.7143	9.49e-05	1	TTTTTATCAGT
Gata1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	61	71	+	10.7143	9.49e-05	1	TTTTTATCAGT
ETV5	FLIPPED__Antisense.flip.antisense__chr14:96000926..96001040,+__2366.1.0.0	42	51	+	10.9091	9.49e-05	0.141	ACCGGAAACT
ETV5	WILDTYPE__Antisense.flip.sense__chr14:96000926..96001040,-__308.1.0.0	64	73	-	10.9091	9.49e-05	0.141	ACCGGAAACT
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	-	-1.19231	9.49e-05	0.932	TCACATTTGTCA
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	+	-1.19231	9.49e-05	0.932	TCACATTTGTCA
Klf1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	26	36	-	10.0758	9.49e-05	0.0596	GACTCCGCCCT
Klf1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	26	36	-	10.0758	9.49e-05	0.0596	GACTCCGCCCT
CREB3L1	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	50	63	-	7.68182	9.49e-05	0.365	CTTCCACGTTATCC
MEIS2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	23	30	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	23	30	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	23	30	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	23	30	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	90	97	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	96	103	-	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	22	29	+	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	22	29	+	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE__Lincrna.noflip.NA__chr9:132083215..132083329,+__895.1.0.0	23	30	+	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	87	94	+	11.5574	9.49e-05	0.98	CTGACAGC
MEIS2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	87	94	+	11.5574	9.49e-05	0.98	CTGACAGC
YY2	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	3	13	-	10.5909	9.49e-05	0.441	GAGCGCCATCT
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	26	39	-	7.2623	9.49e-05	0.189	TCCCTCCTGCAGAG
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	10	25	-	9.61818	9.49e-05	0.0418	CACCACCCACTCCCTT
EGR4	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	46	61	+	9.61818	9.49e-05	0.0418	CACCACCCACTCCCTT
EGR4	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	33	48	-	9.61818	9.49e-05	0.0418	CCCCGCCCCGCCCATC
EGR4	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	67	82	+	9.61818	9.49e-05	0.0418	CCCCGCCCCGCCCATC
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	54	69	-	9.61818	9.49e-05	0.0418	CACCACCCACTCCCTT
EGR4	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	90	105	+	9.61818	9.49e-05	0.0418	CACCACCCACTCCCTT
EGR4	WILDTYPE__Lincrna.noflip.NA__chrX:73512383..73512497,-__948.1.0.0	81	96	-	9.61818	9.49e-05	0.0418	CAACCCCGACGCCATT
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:64188159..64188273,-__1528.1.0.0	87	102	-	9.61818	9.49e-05	0.0418	CGCCGCCCCTGCCAAA
ETS1	WILDTYPE__Lincrna.noflip.NA__chr3:82035247..82035361,+__592.1.0.0	71	80	+	10.8276	9.49e-05	0.12	GCAGGAAGTA
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	25	34	-	10.8276	9.49e-05	0.12	TCCGGAAACG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	30	39	-	10.8276	9.49e-05	0.12	GCAGGAAGTA
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	30	39	-	10.8276	9.49e-05	0.12	GCAGGAAGTA
ETS1	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	62	71	-	10.8276	9.49e-05	0.12	TCCGGAAACG
SPI1	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	73	86	+	1.54545	9.49e-05	0.274	AAATTCAGGAAGGA
SPI1	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	71	84	-	1.54545	9.49e-05	0.274	GGAATGGGGCAGTG
HES5	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	100	111	+	1.22414	9.49e-05	0.298	GGGCACGGGCCA
GLIS1	WILDTYPE__mrna.noflip.NA__chr5:43067583..43067697,+__1317.1.0.0	89	104	-	-11.2308	9.49e-05	0.33	TCACTCTCCACGGAGG
GLIS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	94	109	-	-11.2308	9.49e-05	0.33	GGACCCGCGGCGATAC
GLIS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	94	109	-	-11.2308	9.49e-05	0.33	GGACCCGCGGCGATAC
Znf423	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	2	16	+	4.39326	9.49e-05	0.405	GGCACCACTGGGGGA
Znf423	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	43	57	+	4.39326	9.49e-05	0.405	GGCACCACTGGGGGA
Znf423	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	58	72	-	4.39326	9.49e-05	0.405	GGCACCACTGGGGGA
Znf423	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	99	113	-	4.39326	9.49e-05	0.405	GGCACCACTGGGGGA
Gabpa	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	4	14	-	10.2131	9.49e-05	0.0794	ACGGAAGTTGC
Gabpa	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	25	35	+	10.2131	9.49e-05	0.0794	ACGGAAGTTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	33	43	-	10.2131	9.49e-05	0.0794	CAGGAAGGGGC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	33	43	-	10.2131	9.49e-05	0.0794	CAGGAAGGGGC
Gabpa	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	54	64	+	10.2131	9.49e-05	0.0794	CAGGAAGTACA
Gabpa	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	51	61	-	10.2131	9.49e-05	0.0794	CAGGAAGTACA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.0	66	76	-	10.2131	9.49e-05	0.0794	CCGGAAGGCAA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.0.0	66	76	-	10.2131	9.49e-05	0.0794	CCGGAAGGCAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.2.0	66	76	-	10.2131	9.49e-05	0.0794	CCGGAAGGCAA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	66	76	-	10.2131	9.49e-05	0.0794	CCGGAAGGCAA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	66	76	-	10.2131	9.49e-05	0.0794	CCGGAAGGCAA
Gabpa	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	80	90	-	10.2131	9.49e-05	0.0794	ACGGAAGTTGC
Gabpa	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	101	111	+	10.2131	9.49e-05	0.0794	ACGGAAGTTGC
NFKB1	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	39	51	-	0.836735	9.49e-05	0.268	CTGGGATTTCCCC
TCF3	WILDTYPE__mrna.noflip.NA__chr10:54074938..54075052,+__1300.1.0.0	30	39	+	11.4615	9.49e-05	0.404	GCCACCTGCA
TCF3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	29	38	-	11.4615	9.49e-05	0.404	GCCACCTGCA
TCF3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	29	38	-	11.4615	9.49e-05	0.404	GCCACCTGCA
TCF3	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	77	86	+	11.4615	9.49e-05	0.404	GCCACCTGCA
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.0.0	10	19	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.2.0	10	19	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.1.0	10	19	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.1	10	19	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216082..17216196,-__30.1.3.0	10	19	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397988..73398102,+__1748.1.1.0	34	43	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.0.0	60	69	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.0	60	69	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:17216132..17216246,-__31.1.1.1	60	69	+	10.5769	9.49e-05	0.805	ATTGCGCCAC
CEBPD	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:73397977..73398091,-__2041.1.1.0	61	70	-	10.5769	9.49e-05	0.805	ATTGCGCCAC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.1.0	7	21	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:61429297..61429411,-__863.1.0.0	7	21	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	12	26	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	12	26	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	12	26	+	7.32787	9.49e-05	0.0731	GCCCCCGCCCCCGTC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	2	16	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	2	16	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	17	31	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	17	31	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	17	31	+	7.32787	9.49e-05	0.0731	GGCCCAGCCCACAGG
Klf12	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	19	33	+	7.32787	9.49e-05	0.0731	GGCCCAGCCCACAGG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	7	21	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	7	21	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:99449259..99449373,+__923.1.0.0	21	35	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.1.0	22	36	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	22	36	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	8	22	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	10	24	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	12	26	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	12	26	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.1	27	41	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.0.0	27	41	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:9546244..9546358,+__720.1.1.0	27	41	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	13	27	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr13:96329158..96329272,-__275.1.0.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGTCC
Klf12	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	15	29	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGTCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGTCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.0.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.1.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.0	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:105587821..105587935,-__1611.1.2.1	29	43	+	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	17	31	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	17	31	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	18	32	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	20	34	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	22	36	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	22	36	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.0	25	39	-	7.32787	9.49e-05	0.0731	GGCCCTGCCCATAGC
Klf12	CONTROL_SNP_INDIV__control.flip.sense__chr1:153518247..153518361,-__1714.1.1.0	25	39	-	7.32787	9.49e-05	0.0731	GGCCCTGCCCATAGC
Klf12	CONTROL_BUT_HAS_SNP__control.flip.sense__chr1:153518247..153518361,-__1714.1.0.0	25	39	-	7.32787	9.49e-05	0.0731	GGCCCTGCCCATAGC
Klf12	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr1:153518247..153518361,-__1714.1.2.1	25	39	-	7.32787	9.49e-05	0.0731	GGCCCTGCCCATAGC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	29	43	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	29	43	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	29	43	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	29	43	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	34	48	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	34	48	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	34	48	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	34	48	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	39	53	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	39	53	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	39	53	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	39	53	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	CONTROL_FLIPPED__control.flip.antisense__chr1:153518247..153518361,+__2541.1.0.0	76	90	+	7.32787	9.49e-05	0.0731	GGCCCTGCCCATAGC
Klf12	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	72	86	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	FLIPPED__Lincrna.flip.antisense__chr5:9546244..9546358,-__2710.1.0.0	74	88	-	7.32787	9.49e-05	0.0731	CGCCCCGCCCCGCCC
Klf12	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	82	96	-	7.32787	9.49e-05	0.0731	GGCCCAGCCCACAGG
Klf12	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	84	98	-	7.32787	9.49e-05	0.0731	GGCCCAGCCCACAGG
Rxra	WILDTYPE__Antisense.flip.sense__chr8:17942456..17942570,+__849.1.0.0	9	22	+	1.89024	9.49e-05	0.528	GATTTCAAAGTCCA
Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.0.0	23	36	-	1.89024	9.49e-05	0.528	TGGGGCAGAGGCCA
Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	23	36	-	1.89024	9.49e-05	0.528	TGGGGCAGAGGCCA
Rxra	WILDTYPE__Enhancer.noflip.NA__chr22:50342723..50342837,-__2258.1.0.0	94	107	+	1.89024	9.49e-05	0.528	TGGGGCAGAGGCCA
Rxra	FLIPPED__Antisense.flip.antisense__chr8:17942456..17942570,-__2725.1.0.0	93	106	-	1.89024	9.49e-05	0.528	GATTTCAAAGTCCA
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	29	39	+	9.64286	9.5e-05	0.384	GCGCACGCGGC
MAX::MYC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	36	-	9.64286	9.5e-05	0.384	GCGCACGCGGC
MAX::MYC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	36	-	9.64286	9.5e-05	0.384	GCGCACGCGGC
GSX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	7	16	-	9.4127	9.5e-05	1	TCCAATTAAC
GSX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	7	16	-	9.4127	9.5e-05	1	TCCAATTAAC
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	1	15	-	5.2931	9.5e-05	0.0418	CTACCCCCCCACTCC
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	1	15	-	5.2931	9.5e-05	0.0418	CTACCCCCCCACTCC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	38	52	+	5.2931	9.5e-05	0.0418	CTCCGCCCGCCCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	38	52	+	5.2931	9.5e-05	0.0418	CTCCGCCCGCCCCCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	38	52	+	5.2931	9.5e-05	0.0418	CTCCGCCCGCCCCCC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	38	52	+	5.2931	9.5e-05	0.0418	CTCCGCCCGCCCCCC
EGR3	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	49	63	-	5.2931	9.5e-05	0.0418	TCCCACCGCCGCGCT
MAF::NFE2	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	10	24	-	7.7377	9.5e-05	0.535	CTGACGCAGCAGCGT
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	83	97	+	7.7377	9.5e-05	0.535	ATGACTCATGAGTGG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	83	97	+	7.7377	9.5e-05	0.535	ATGACTCATGAGTGG
MAF::NFE2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	83	97	+	7.7377	9.5e-05	0.535	ATGACTCATGAGTGG
MAF::NFE2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	83	97	+	7.7377	9.5e-05	0.535	ATGACTCATGAGTGG
MAF::NFE2	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	91	105	+	7.7377	9.5e-05	0.535	CTGACGCAGCAGCGT
NFKB2	WILDTYPE__Lincrna.flip.sense__chr22:35627013..35627127,-__525.1.0.0	53	65	+	7.18182	9.5e-05	0.265	AGGGGCTCCTCCC
NFKB2	FLIPPED__Lincrna.flip.antisense__chr22:35627013..35627127,+__2387.1.0.0	50	62	-	7.18182	9.5e-05	0.265	AGGGGCTCCTCCC
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.0.0	85	97	+	7.18182	9.5e-05	0.265	GCGGGGAGCCCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:159557769..159557883,+__1072.1.1.0	85	97	+	7.18182	9.5e-05	0.265	GCGGGGAGCCCCT
HSF4	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	56	68	-	10.1341	9.5e-05	1	CTCTGGAAACATC
HSF4	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	93	105	-	10.1341	9.5e-05	1	CTCTGGAAACATC
HSF4	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	10	22	+	10.1341	9.5e-05	1	CTCTGGAAACATC
HSF4	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	47	59	+	10.1341	9.5e-05	1	CTCTGGAAACATC
ZNF143	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	46	61	-	0	9.5e-05	0.475	TACCCAGGAGACCTCA
SREBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	+	10.5854	9.5e-05	0.472	GTCACGCGAG
NHLH1	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	6	15	-	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	37	46	-	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	37	46	-	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	37	46	-	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	37	46	-	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	86	95	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	86	95	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	86	95	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	86	95	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	100	109	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	100	109	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	103	112	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	103	112	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	103	112	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	103	112	+	10.2414	9.5e-05	0.154	TGCAGCTGAG
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	3	14	+	10.6735	9.5e-05	0.0876	AGCCCCCGGGGC
TFAP2C	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	+	10.6735	9.5e-05	0.0876	AGCCCGGCGGCG
TFAP2C	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	88	99	+	10.6735	9.5e-05	0.0876	CGCCTCAGGGAA
TFAP2C	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	16	27	-	10.6735	9.5e-05	0.0876	CGCCTCAGGGAA
TFAP2C	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	-	10.6735	9.5e-05	0.0876	AGCCCGGCGGCG
PKNOX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.1.0	13	24	-	1.2449	9.5e-05	1	CGGCAGTTGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:124310..124424,+__605.1.0.0	13	24	-	1.2449	9.5e-05	1	CGGCAGTTGTCA
PKNOX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	91	102	+	1.2449	9.5e-05	1	CGGCAGTTGTCA
PKNOX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	91	102	+	1.2449	9.5e-05	1	CGGCAGTTGTCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	-	9.44262	9.5e-05	0.0589	CGCCCGCCCGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:40058390..40058504,+__1085.1.1.0	86	98	-	9.44262	9.5e-05	0.0589	CGCCCGGCCGGGA
NR2C2	CONTROL_FLIPPED__control.flip.antisense__chr16:67993585..67993700,-__2897.1.0.0	55	69	-	8.55714	9.5e-05	0.122	AAAGGGCAGGGTGGG
NR2C2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr16:67993585..67993700,+__2318.1.0.0	47	61	+	8.55714	9.5e-05	0.122	AAAGGGCAGGGTGGG
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	49	60	+	10.6935	9.5e-05	0.281	GCGACCCCTGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	63	74	-	10.6935	9.5e-05	0.281	GCGACCCCTGCG
Sox3	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	19	28	+	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	26	35	+	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	26	35	+	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	WILDTYPE__Antisense.flip.sense__chr1:28908349..28908463,-__63.1.0.0	79	88	+	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	4	13	-	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	FLIPPED__Antisense.flip.antisense__chr1:28908349..28908463,+__2330.1.0.0	27	36	-	10.931	9.5e-05	0.659	CCTTTCTCCC
Sox3	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	80	89	-	10.931	9.5e-05	0.659	CCTTTCTCCC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	14	24	-	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	14	24	-	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	31	41	-	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	31	41	-	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.0.0	50	60	+	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159639..101159753,-__2241.1.1.0	50	60	+	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	76	86	+	9.70909	9.5e-05	0.27	AGCTGACTCAG
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	102	112	+	9.70909	9.5e-05	0.27	CAGTGATTCAC
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	102	112	+	9.70909	9.5e-05	0.27	CAGTGATTCAC
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	42	56	+	9.61702	9.5e-05	0.374	AATAATGAGATAAGG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.1.0	42	56	+	9.61702	9.5e-05	0.374	AATAATGAGATAAGG
JUND(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	42	56	+	9.61702	9.5e-05	0.374	AATAATGAGATAAGG
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.0.0	42	56	+	9.61702	9.5e-05	0.374	AATAATGAGATAAGG
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.2.0	42	56	+	9.61702	9.5e-05	0.374	AATAATGAGATAAGG
GLIS3	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	6	19	-	2.56061	9.51e-05	0.393	CATCCCCCACATCC
GLIS3	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	96	109	+	2.56061	9.51e-05	0.393	CATCCCCCACATCC
TFAP2B(var.2)	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	7	17	+	10.2727	9.51e-05	0.0718	TCCCCCCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	35	45	+	10.2727	9.51e-05	0.0718	TCCCCCCGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52869196..52869310,-__1629.1.0.0	38	48	+	10.2727	9.51e-05	0.0718	TCCCCCCGGCG
TFAP2B(var.2)	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	98	108	-	10.2727	9.51e-05	0.0718	TCCCCCCGGCG
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	16	25	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.3.1	16	25	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.0.0	23	32	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:126963396..126963510,-__833.1.1.0	23	32	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.1.0	28	37	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:72446430..72446544,-__1724.1.0.0	28	37	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	30	39	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:25360542..25360656,+__1837.1.0.0	47	56	+	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr7:94285400..94285514,-__1335.1.0.0	41	50	-	10.3878	9.51e-05	0.0293	TTCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr1:25360585..25360699,-__2130.1.0.0	102	111	-	10.3878	9.51e-05	0.0293	TTCCCTCCCA
TP63	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	35	52	-	-3.63793	9.51e-05	1	AACACTTTGGGTCACGTG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.1.0	54	64	-	10.5102	9.51e-05	0.352	CTGCTAGAAAA
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:114827744..114827858,+__1368.1.0.0	54	64	-	10.5102	9.51e-05	0.352	CTGCTAGAAAA
ZIC3	WILDTYPE__Antisense.noflip.NA__chr8:41435905..41436019,-__856.1.0.0	56	70	+	7.2	9.51e-05	0.127	GGATCCCCGGGGCGC
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	21	34	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	21	34	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	21	34	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	21	34	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	27	40	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	75	88	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	81	94	-	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	21	34	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	21	34	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	21	34	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	21	34	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	27	40	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	75	88	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
CREB3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	81	94	+	8.91429	9.51e-05	0.312	TGGCCACGTGGCCA
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.1.0	21	34	-	5.2766	9.51e-05	0.106	CGCCCCGCGCCGCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42798088..42798202,+__1595.1.0.0	21	34	-	5.2766	9.51e-05	0.106	CGCCCCGCGCCGCG
ZIC1	WILDTYPE__mrna.noflip.NA__chr21:42798059..42798173,+__1066.1.0.0	50	63	-	5.2766	9.51e-05	0.106	CGCCCCGCGCCGCG
TFAP2A	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	12	22	-	10.8	9.51e-05	0.0575	TCCCTGCGGCT
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	34	44	+	10.8	9.51e-05	0.0575	CGCCCTGGGCA
TFAP2A	WILDTYPE__mrna.flip.sense__chr2:74375052..74375166,-__1183.1.0.0	27	37	-	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.1.0	38	48	+	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:74375092..74375206,+__445.1.0.0	38	48	+	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.0.0	50	60	-	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:19079149..19079263,+__1031.1.1.0	50	60	-	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	FLIPPED__Lincrna.flip.antisense__chr2:74375092..74375206,-__2672.1.0.0	67	77	-	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	FLIPPED__mrna.flip.antisense__chr2:74375052..74375166,+__2499.1.0.0	78	88	+	10.8	9.51e-05	0.0575	CCCCGGAGGCC
TFAP2A	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	93	103	+	10.8	9.51e-05	0.0575	TCCCTGCGGCT
BATF::JUN	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	71	81	+	10.6538	9.51e-05	0.462	TTAATGACTAA
Vdr	WILDTYPE__Antisense.noflip.NA__chr15:81616749..81616863,+__334.1.0.0	96	111	-	2.81967	9.51e-05	0.89	CGGTGCACTCAGGACA
Gmeb1	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	64	80	+	10.4737	9.51e-05	0.668	AACCGTACGTCCGTTTG
Gmeb1	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	35	51	-	10.4737	9.51e-05	0.668	AACCGTACGTCCGTTTG
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr20:31331718..31331832,-__1270.1.0.0	82	93	-	5.4898	9.51e-05	0.275	GCTGACATCAGA
TFAP2B(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	35	47	-	8.96721	9.51e-05	0.0652	CGCCCTTTGGGGC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	-	8.96721	9.51e-05	0.0652	AGCCGCACGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	-	8.96721	9.51e-05	0.0652	AGCCGCACGGGCG
TFAP2B(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	68	80	+	8.96721	9.51e-05	0.0652	CGCCCTTTGGGGC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	56	68	-	8.96721	9.51e-05	0.0652	GGCCGCTCGGGCG
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	91	103	+	8.96721	9.51e-05	0.0652	TCCCCCGCCGGGG
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr17:37024702..37024816,+__1769.1.0.0	93	105	+	8.96721	9.51e-05	0.0652	ACCCTGTCAGGCA
CEBPE	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	-	10.9455	9.51e-05	0.806	GTTGCGCCAC
Myog	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	25	35	-	10.8367	9.51e-05	0.19	GGCAGGTGAGC
Myog	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.0.0	25	35	-	10.8367	9.51e-05	0.19	GCCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:73511864..73511978,-__946.1.1.0	25	35	-	10.8367	9.51e-05	0.19	GCCAGCTGCCG
Myog	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	97	107	-	10.8367	9.51e-05	0.19	GGCAGGTGAGC
Myog	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	97	107	-	10.8367	9.51e-05	0.19	GGCAGGTGAGC
Bcl6	WILDTYPE__mrna.noflip.NA__chr14:55494220..55494334,+__1019.1.0.0	37	50	-	10.129	9.51e-05	0.522	TTTCCTGGGAGGAG
Bcl6	FLIPPED__Enhancer.flip.antisense__chr13:70523521..70523635,+__2570.1.0.0	56	69	-	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE__mrna.noflip.NA__chrX:33357470..33357584,-__1362.1.0.0	92	105	-	10.129	9.51e-05	0.522	CTTCCTGAAAGCAT
Bcl6	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.3.0	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.0.0	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.2.0	46	59	+	10.129	9.51e-05	0.522	TTTCTTAAATAGCA
JUN	FLIPPED__Lincrna.flip.antisense__chr6:71104510..71104624,-__2715.1.0.0	91	103	+	9.30612	9.51e-05	0.358	AGTCTGATGTAAC
JUN	WILDTYPE__Lincrna.flip.sense__chr6:71104510..71104624,+__754.1.0.0	12	24	-	9.30612	9.51e-05	0.358	AGTCTGATGTAAC
MLX	WILDTYPE__mrna.flip.sense__chr5:149380182..149380296,-__1276.1.0.0	47	56	+	9.21429	9.51e-05	0.339	AGCGCGTGAC
MLX	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	91	100	+	9.21429	9.51e-05	0.339	TTCGCGTGAC
MLX	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	3	12	-	9.21429	9.51e-05	0.339	TTCGCGTGAC
MLX	WILDTYPE__Enhancer.noflip.NA__chr11:65264978..65265092,+__1988.1.0.0	5	14	-	9.21429	9.51e-05	0.339	AGCGCGTGAC
MLX	FLIPPED__mrna.flip.antisense__chr5:149380182..149380296,+__2528.1.0.0	59	68	-	9.21429	9.51e-05	0.339	AGCGCGTGAC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.0	22	31	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.1.1	22	31	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156396..99156510,+__1682.1.0.0	22	31	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE__Lincrna.noflip.NA__chr22:21311317..21311431,+__513.1.0.0	31	40	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.0.0	76	85	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:99156342..99156456,+__1681.1.1.0	76	85	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE__mrna.flip.sense__chr21:34638592..34638706,+__1185.1.0.0	93	102	+	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	FLIPPED__mrna.flip.antisense__chr21:34638592..34638706,-__2789.1.0.0	13	22	-	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	90	99	-	10.6724	9.51e-05	0.133	GCCGGAACTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	90	99	-	10.6724	9.51e-05	0.133	GCCGGAACTC
ELK3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	90	99	-	10.6724	9.51e-05	0.133	GCCGGAACTC
ELK3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	90	99	-	10.6724	9.51e-05	0.133	GCCGGAACTC
ELK3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	99	108	-	10.6724	9.51e-05	0.133	CCCGGAAGCC
ELK3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	99	108	-	10.6724	9.51e-05	0.133	CCCGGAAGCC
EGR1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	6	19	+	9.51923	9.51e-05	0.0313	CCTTCACCCCTGCC
EGR1	WILDTYPE__Lincrna.flip.sense__chr11:65266436..65266550,+__192.1.0.0	3	16	-	9.51923	9.51e-05	0.0313	CACCTTCCGCCGCC
EGR1	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	13	26	-	9.51923	9.51e-05	0.0313	CGGCCGCCCTCTGC
EGR1	WILDTYPE__mrna.noflip.NA__chrX:47092738..47092852,+__1290.1.0.0	19	32	-	9.51923	9.51e-05	0.0313	TCCCCGCCCCTTTA
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	47	+	9.51923	9.51e-05	0.0313	CCCCCTCCCTCAGG
EGR1	WILDTYPE__mrna.noflip.NA__chr12:6809946..6810060,-__1327.1.0.0	29	42	-	9.51923	9.51e-05	0.0313	CCGTCTCCGCCTCC
EGR1	FLIPPED__mrna.flip.antisense__chr21:46340854..46340968,+__2501.1.0.0	57	70	+	9.51923	9.51e-05	0.0313	CCTTCACCCCTGCC
EGR1	WILDTYPE__mrna.flip.sense__chr21:46340854..46340968,-__1186.1.0.0	45	58	-	9.51923	9.51e-05	0.0313	CCTTCACCCCTGCC
EGR1	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	60	73	+	9.51923	9.51e-05	0.0313	TCCCTGCCCTCTCC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	89	102	+	9.51923	9.51e-05	0.0313	CGGCCGCCCTCTGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	89	102	+	9.51923	9.51e-05	0.0313	CGGCCGCCCTCTGC
EGR1	FLIPPED__Lincrna.flip.antisense__chr11:65266436..65266550,-__2636.1.0.0	99	112	+	9.51923	9.51e-05	0.0313	CACCTTCCGCCGCC
EGR1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.2.0	91	104	-	9.51923	9.51e-05	0.0313	CCACCGCTCTCGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:155164465..155164579,-__2026.1.0.0	91	104	-	9.51923	9.51e-05	0.0313	CCACCGCTCTCGCC
EGR1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	96	109	-	9.51923	9.51e-05	0.0313	CCTTCACCCCTGCC
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.1	14	31	-	-16.1579	9.51e-05	0.056	GGGGGGAGGGGAAGGAGC
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:30948822..30948936,+__228.1.1.0	14	31	-	-16.1579	9.51e-05	0.056	GGGGGGAGGGGAAGGAGC
EOMES	WILDTYPE__Enhancer.noflip.NA__chr8:38009625..38009739,+__1919.1.0.0	61	73	-	10.561	9.52e-05	1	AAAGTGTGAGGAA
BATF3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	23	36	+	-0.515152	9.52e-05	0.265	AAGTGACGTCAGGT
BATF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.1.0	25	38	+	-0.515152	9.52e-05	0.265	TGCTGACGTGTTGA
BATF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:59309383..59309497,-__2213.1.0.0	25	38	+	-0.515152	9.52e-05	0.265	TGCTGACGTGTTGA
BATF3	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	57	70	+	-0.515152	9.52e-05	0.265	AAGTGACGTCAGGT
BATF3	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	45	58	-	-0.515152	9.52e-05	0.265	AAGTGACGTCAGGT
BATF3	FLIPPED__Enhancer.flip.antisense__chr8:59309383..59309497,+__2602.1.0.0	77	90	-	-0.515152	9.52e-05	0.265	TGCTGACGTGTTGA
BATF3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	79	92	-	-0.515152	9.52e-05	0.265	AAGTGACGTCAGGT
E2F4	WILDTYPE__Lincrna.noflip.NA__chr1:203274402..203274516,-__45.1.0.0	13	23	-	9.93103	9.52e-05	0.0524	TGGCGGGGGCG
E2F4	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	22	32	-	9.93103	9.52e-05	0.0524	TGGCGGGGGCG
E2F4	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	38	48	+	9.93103	9.52e-05	0.0524	TGGCGGGGGCG
E2F4	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	37	47	-	9.93103	9.52e-05	0.0524	TGGCGGGGGCG
E2F4	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	83	93	+	9.93103	9.52e-05	0.0524	TGGCGGGGGCG
TP73	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	30	47	+	7.61538	9.52e-05	0.744	GGCAAGCGTTGCCATGAC
NFAT5	WILDTYPE__Antisense.noflip.NA__chr14:71788530..71788644,-__297.1.0.0	29	38	+	10.6129	9.52e-05	1	ATTTCCCATG
MZF1(var.2)	WILDTYPE__Antisense.flip.sense__chr5:79783730..79783844,-__705.1.0.0	1	10	+	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	5	14	-	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	5	14	-	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	15	24	+	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	21	30	+	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	13	22	-	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	13	22	-	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE__Enhancer.noflip.NA__chr12:6291612..6291726,+__1944.1.0.0	51	60	+	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	55	64	-	10.8081	9.52e-05	0.185	CGAGGCGGAA
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	101	110	+	10.8081	9.52e-05	0.185	GGCGGGGGAA
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr5:79783730..79783844,+__2412.1.0.0	105	114	-	10.8081	9.52e-05	0.185	GGCGGGGGAA
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	67	76	-	10.4286	9.52e-05	1	TGAAGGACAT
Esrrg	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	71	80	-	10.4286	9.52e-05	1	TGAAGGACAT
Esrrg	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.1.0	81	90	+	10.4286	9.52e-05	1	TGAAGGACAT
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:172198163..172198277,-__1642.1.2.1	81	90	+	10.4286	9.52e-05	1	TGAAGGACAT
PRDM1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	5	19	+	9.67273	9.52e-05	0.347	TGAGAATGAAAGCTT
PRDM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	5	19	+	9.67273	9.52e-05	0.347	TGAGAATGAAAGCTT
PRDM1	WILDTYPE__mrna.noflip.NA__chrX:6146870..6146984,-__1130.1.0.0	86	100	-	9.67273	9.52e-05	0.347	GAGAAGGGAGAGAGA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	96	110	-	9.67273	9.52e-05	0.347	TGAGAATGAAAGCTT
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.1.0	1	11	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.1	1	11	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.0.0	1	11	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.3.0	1	11	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108910965..108911079,+__1632.1.2.0	1	11	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	14	24	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	14	24	+	9.14545	9.52e-05	0.025	CCGGGGGCGCG
Ascl2	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	22	-	10.3714	9.52e-05	0.254	ACCAGCTGGC
Ascl2	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	102	+	10.3714	9.52e-05	0.254	ACCAGCTGGC
Ascl2	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	106	+	10.3714	9.52e-05	0.254	ACCAGCTGGC
STAT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.1.0	34	44	+	9.65455	9.52e-05	0.432	CCTCCGGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:62599683..62599797,+__181.1.0.0	34	44	+	9.65455	9.52e-05	0.432	CCTCCGGGAAG
Hmx1	FLIPPED__Enhancer.flip.antisense__chr19:16189775..16189889,-__2867.1.0.0	36	52	+	10.2805	9.52e-05	1	TCCTGCAATCAAAGCCT
Hmx1	WILDTYPE__Enhancer.flip.sense__chr19:16189780..16189894,-__2181.1.0.0	41	57	+	10.2805	9.52e-05	1	TCCTGCAATCAAAGCCT
Hmx1	FLIPPED__Enhancer.flip.antisense__chr19:16189780..16189894,+__2583.1.0.0	58	74	-	10.2805	9.52e-05	1	TCCTGCAATCAAAGCCT
Hmx1	WILDTYPE__Enhancer.flip.sense__chr19:16189775..16189889,+__1888.1.0.0	63	79	-	10.2805	9.52e-05	1	TCCTGCAATCAAAGCCT
Myc	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	8	17	+	11.1455	9.52e-05	0.561	GCACGTGGCC
EBF1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	95	108	+	8.22951	9.52e-05	0.371	AGTCTCCAGAGAAC
Hes2	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	12	24	-	10.3651	9.52e-05	0.577	GGATGACACATGC
Hes2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	72	84	-	10.3651	9.52e-05	0.577	CAAGGGCACCTGC
Hes2	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	91	103	+	10.3651	9.52e-05	0.577	GGATGACACATGC
Myod1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.1.0	47	59	+	10.8776	9.52e-05	0.202	GCCAGCTGGCTCT
Myod1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:114317039..114317153,+__730.1.0.0	47	59	+	10.8776	9.52e-05	0.202	GCCAGCTGGCTCT
Myod1	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	68	80	+	10.8776	9.52e-05	0.202	CGCAGCTGGCATT
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.0.0	31	45	+	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	31	45	+	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr12:53574395..53574509,+__2535.1.0.0	62	76	+	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	39	53	-	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.0.0	39	53	-	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr12:53574426..53574540,-__2817.1.0.0	70	84	-	10.3063	9.52e-05	0.19	GAGGGGGAGGGGGAA
Pparg::Rxra	WILDTYPE__Enhancer.noflip.NA__chr22:29260988..29261102,-__2255.1.0.0	90	104	-	10.3063	9.52e-05	0.19	GCAGGCTAAAGGACA
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.1.0	7	16	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.1	7	16	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.2.0	9	18	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr8:145026364..145026478,+__1918.1.0.0	9	18	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.0.0	17	26	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422408..103422522,+__1630.1.1.0	17	26	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	49	58	+	9.6993	9.52e-05	0.124	AGCACGTGAC
Hes1	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	57	66	-	9.6993	9.52e-05	0.124	AGCACGTGAC
Hes1	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	77	86	+	9.6993	9.52e-05	0.124	GCCACGAGCC
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	79	88	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	79	88	+	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	73	82	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	73	82	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	73	82	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	73	82	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	73	82	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.1.0	92	101	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:192711181..192711295,+__417.1.0.0	92	101	-	9.6993	9.52e-05	0.124	CACACGCGCG
Hes1	FLIPPED__Enhancer.flip.antisense__chr8:145026364..145026478,-__2885.1.0.0	97	106	-	9.6993	9.52e-05	0.124	CACACGCGCG
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	18	-	10.4754	9.52e-05	0.912	TCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	18	-	10.4754	9.52e-05	0.912	TCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	43	52	-	10.4754	9.52e-05	0.912	TCAGCTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	43	52	-	10.4754	9.52e-05	0.912	TCAGCTGCCT
Myb	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	78	87	+	10.4754	9.52e-05	0.912	TCAGCTGCCT
Myb	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	78	87	+	10.4754	9.52e-05	0.912	TCAGCTGCCT
SP1	FLIPPED__Antisense.flip.antisense__chr14:20811533..20811647,+__2360.1.0.0	26	36	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.0.0	83	93	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.2.0	83	93	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.0	83	93	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.3.1	83	93	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:156878514..156878628,-__1618.1.1.0	83	93	+	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.0.0	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.1	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.4.0	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.3.0	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.1.0	79	89	-	10.0577	9.52e-05	0.0215	CCTCCGCCCTA
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.1.0	25	42	-	10.0545	9.52e-05	1	CCAATCACAGTGCAGCAC
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:3816787..3816901,-__1139.1.0.0	25	42	-	10.0545	9.52e-05	1	CCAATCACAGTGCAGCAC
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	45	62	+	10.0545	9.52e-05	1	TTAATCTTAAAAGCCCAG
GATA1::TAL1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	45	62	+	10.0545	9.52e-05	1	TTAATCTTAAAAGCCCAG
GATA1::TAL1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	45	62	+	10.0545	9.52e-05	1	TTAATCTTAAAAGCCCAG
GATA1::TAL1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	45	62	+	10.0545	9.52e-05	1	TTAATCTTAAAAGCCCAG
GATA1::TAL1	FLIPPED__mrna.flip.antisense__chr1:3816787..3816901,+__2475.1.0.0	73	90	+	10.0545	9.52e-05	1	CCAATCACAGTGCAGCAC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	7	26	-	2.57798	9.52e-05	0.0764	ACCCCACTCCTCCCCCAAGT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	7	26	-	2.57798	9.52e-05	0.0764	ACCCCACTCCTCCCCCAAGT
RREB1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	48	67	+	2.57798	9.52e-05	0.0764	ACACACACCGGCACACACGC
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	48	67	+	2.57798	9.52e-05	0.0764	ACACACACCGGCACACACGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	78	92	-	9.54545	9.52e-05	0.132	CTCTCGCGGCTCTAA
FIGLA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	+	11.1724	9.53e-05	0.859	ACCAGCTGCT
FIGLA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	+	11.1724	9.53e-05	0.859	ACCAGCTGCT
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	24	35	-	10.2368	9.53e-05	0.0396	CACACCCCTCCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.0	24	35	-	10.2368	9.53e-05	0.0396	CACACCCCTCCT
SP8	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.1.1	24	35	-	10.2368	9.53e-05	0.0396	CACACCCCTCCT
SP8	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	39	50	-	10.2368	9.53e-05	0.0396	CACACCCCTCCT
SP8	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	60	71	+	10.2368	9.53e-05	0.0396	GCCCCGCACACC
REL	WILDTYPE__Lincrna.noflip.NA__chr3:177545491..177545605,+__567.1.0.0	20	29	-	10.8182	9.53e-05	0.341	GGGAATTTTC
REL	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	27	36	-	10.8182	9.53e-05	0.341	TGGGACTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	27	36	-	10.8182	9.53e-05	0.341	TGGGACTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.1.0	39	48	-	10.8182	9.53e-05	0.341	GGGAATTTTC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.0.0	39	48	-	10.8182	9.53e-05	0.341	GGGAATTTTC
REL	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	44	53	-	10.8182	9.53e-05	0.341	TGGGACTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr1:16481632..16481746,+__28.1.0.0	63	72	+	10.8182	9.53e-05	0.341	TGGGACTTCC
REL	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	64	73	+	10.8182	9.53e-05	0.341	TGGGACTTCC
REL	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	79	88	+	10.8182	9.53e-05	0.341	TGGGACTTCC
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	36	56	-	8.93878	9.53e-05	0.0237	GGGTGGGGGGAGTGGGGAGAG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.2.0	50	70	-	8.93878	9.53e-05	0.0237	GGAGAAAGGAGCGAGAAATGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.0.0	50	70	-	8.93878	9.53e-05	0.0237	GGAGAAAGGAGCGAGAAATGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.1.0	50	70	-	8.93878	9.53e-05	0.0237	GGAGAAAGGAGCGAGAAATGA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.1	50	70	-	8.93878	9.53e-05	0.0237	GGAGAAAGGAGCGAGAAATGA
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16126131..16126245,-__492.1.3.0	50	70	-	8.93878	9.53e-05	0.0237	GGAGAAAGGAGCGAGAAATGA
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:153839086..153839200,-__558.1.0.0	74	94	-	8.93878	9.53e-05	0.0237	GATGGAGGCGGATCTGGGCGG
ZNF263	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	90	110	-	8.93878	9.53e-05	0.0237	GGGGAGGGGGGAGGGGTGGAG
ZNF263	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	5	25	+	8.93878	9.53e-05	0.0237	GGGGAGGGGGGAGGGGTGGAG
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:153839086..153839200,+__2392.1.0.0	21	41	+	8.93878	9.53e-05	0.0237	GATGGAGGCGGATCTGGGCGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	30	50	+	8.93878	9.53e-05	0.0237	AGGGATGGGAACGGGGGAGAA
E2F7	WILDTYPE__Antisense.flip.sense__chr11:22850880..22850994,+__173.1.0.0	2	15	-	-6.14754	9.53e-05	1	ATTCGGCGCGAAAA
E2F7	FLIPPED__Antisense.flip.antisense__chr11:22850880..22850994,-__2631.1.0.0	100	113	+	-6.14754	9.53e-05	1	ATTCGGCGCGAAAA
REST	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	88	108	+	4.16327	9.53e-05	0.251	GCCACAGCTCTGGAGAGCACT
RARA(var.2)	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	7	23	-	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:90407819..90407933,+__1986.1.0.0	7	23	-	2.04918	9.53e-05	0.563	AGGTCAACTATGGGCCC
RARA(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	61	77	-	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	38	54	+	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	38	54	+	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	38	54	+	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	38	54	+	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:90407774..90407888,-__2279.1.0.0	47	63	+	2.04918	9.53e-05	0.563	AGGTCAACTATGGGCCC
RARA(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	48	64	+	2.04918	9.53e-05	0.563	AGGGCAACGAGAGGCAA
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	48	64	+	2.04918	9.53e-05	0.563	AGGGCAACGAGAGGCAA
RARA(var.2)	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	92	108	+	2.04918	9.53e-05	0.563	CGTTCCAGCCAAGGCCA
PPARG	WILDTYPE__mrna.noflip.NA__chr2:136499246..136499360,+__1397.1.0.0	22	41	-	6.12222	9.53e-05	1	GTCGGTGTCCGTGCCCCAGG
PPARG	WILDTYPE__Antisense.noflip.NA__chr8:128807988..128808102,+__836.1.0.0	41	60	-	6.12222	9.53e-05	1	CTGTGTCAAGTTGAACAAGT
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.0	91	102	+	10.1573	9.53e-05	1	AGGCCAGCTGGC
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.0.0	91	102	+	10.1573	9.53e-05	1	AGGCCAGCTGGC
TAL1::TCF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr8:6264068..6264182,+__1227.1.1.1	91	102	+	10.1573	9.53e-05	1	AGGCCAGCTGGC
TAL1::TCF3	FLIPPED__mrna.flip.antisense__chr8:6264068..6264182,-__2806.1.0.0	13	24	-	10.1573	9.53e-05	1	AGGCCAGCTGGC
NFATC3	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	73	82	+	10.697	9.53e-05	1	TATTTCCACT
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:30249477..30249591,-__2082.1.0.0	83	95	-	10.0984	9.53e-05	0.359	CTGGCTCTCAGGT
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	58	70	+	10.0984	9.53e-05	0.359	CCGGCTCACTCCT
SRF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.0.0	47	62	-	4.03279	9.53e-05	1	TGACCTTATATAGCTG
SRF	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30650001..30650115,+__1974.1.1.0	47	62	-	4.03279	9.53e-05	1	TGACCTTATATAGCTG
SRF	WILDTYPE__Enhancer.noflip.NA__chr6:30650032..30650146,-__2267.1.0.0	84	99	+	4.03279	9.53e-05	1	TGACCTTATATAGCTG
SPI1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	37	50	-	1.52727	9.53e-05	0.274	AGGAAGCGGAAGAC
SPI1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	65	78	+	1.52727	9.53e-05	0.274	AGGAAGCGGAAGAC
ELF1	WILDTYPE__Antisense.noflip.NA__chr21:38593665..38593779,+__506.1.0.0	40	51	+	7.98182	9.53e-05	0.137	GAACAGGAAGCG
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.1.0	49	60	-	7.98182	9.53e-05	0.137	GAGGCGGAAGCA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:19431574..19431688,+__1361.1.0.0	49	60	-	7.98182	9.53e-05	0.137	GAGGCGGAAGCA
SREBF2(var.2)	WILDTYPE__Lincrna.noflip.NA__chr11:62622130..62622244,-__184.1.0.0	67	76	+	8.78182	9.53e-05	0.275	ATCACGTTAC
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	15	29	+	9.73077	9.54e-05	0.238	ATGATGGCCAATGAA
NFYB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	15	29	+	9.73077	9.54e-05	0.238	ATGATGGCCAATGAA
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	39	48	+	9.48936	9.54e-05	0.112	ACCGGATGCT
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	39	48	+	9.48936	9.54e-05	0.112	ACCGGATGCT
MEF2C	FLIPPED__mrna.flip.antisense__chr2:61372171..61372285,-__2788.1.0.0	44	58	+	10.322	9.54e-05	1	AGGCTCCAAATAGCT
MEF2C	WILDTYPE__mrna.flip.sense__chr2:61372171..61372285,+__1182.1.0.0	57	71	-	10.322	9.54e-05	1	AGGCTCCAAATAGCT
SP2	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	15	29	+	9.62069	9.54e-05	0.0193	CCTCCTCCCTTTGGC
SP2	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	50	64	-	9.62069	9.54e-05	0.0193	CCTCCACCCACGCCT
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:9242168..9242282,+__96.1.0.0	73	87	+	9.62069	9.54e-05	0.0193	GGTCCTCCTTCCTGC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	67	81	-	9.62069	9.54e-05	0.0193	GCACCACCCATCGCC
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	67	81	-	9.62069	9.54e-05	0.0193	GCACCACCCATCGCC
IRF1	WILDTYPE__Antisense.noflip.NA__chr2:168797655..168797769,-__404.1.0.0	56	76	+	8.08065	9.54e-05	0.19	AGGAGGTTCCGCTTTTGCGTC
TEAD4	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	24	33	+	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	8	17	-	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	76	85	-	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.3.0	77	86	-	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.0.0	77	86	-	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.4.0	77	86	-	10.9032	9.54e-05	0.839	AGCATTCCTG
TEAD4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577663..32577777,-__2273.1.5.0	77	86	-	10.9032	9.54e-05	0.839	AGCATTCCTG
ESR1	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	98	114	+	-1.74242	9.54e-05	0.514	AGGGTCGCGAGGCCCGC
ESR1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.1.0	1	17	-	-1.74242	9.54e-05	0.514	AGGGTCGCGAGGCCCGC
ESR1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	1	17	-	-1.74242	9.54e-05	0.514	AGGGTCGCGAGGCCCGC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.0.0	13	26	+	9.93939	9.54e-05	0.0687	CAGGCCCCGCCCTG
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:71159594..71159708,+__196.1.1.0	13	26	+	9.93939	9.54e-05	0.0687	CAGGCCCCGCCCTG
Zfx	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	33	46	+	9.93939	9.54e-05	0.0687	GAAGCTGTGGCCTC
Zfx	WILDTYPE__mrna.noflip.NA__chr19:45417885..45417999,+__1048.1.0.0	34	47	+	9.93939	9.54e-05	0.0687	CCCTCCCCAGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.0.0	64	77	+	9.93939	9.54e-05	0.0687	TCCGCCTCAGCCTC
Zfx	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	64	77	+	9.93939	9.54e-05	0.0687	TCCGCCTCAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.0	64	77	+	9.93939	9.54e-05	0.0687	TCCGCCTCAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	64	77	+	9.93939	9.54e-05	0.0687	TCCGCCTCAGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.1.0	64	77	+	9.93939	9.54e-05	0.0687	TCCGCCTCAGCCTC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	5	18	-	7.86207	9.54e-05	0.0413	AGGCGCGCCCCTGT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	5	18	-	7.86207	9.54e-05	0.0413	AGGCGCGCCCCTGT
KLF14	FLIPPED__Lincrna.flip.antisense__chr11:118868677..118868791,+__2345.1.0.0	20	33	+	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	8	21	-	7.86207	9.54e-05	0.0413	AGCCACTCCCATGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	8	21	-	7.86207	9.54e-05	0.0413	AGCCACTCCCATGC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	8	21	-	7.86207	9.54e-05	0.0413	AGCCACTCCCATGC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	8	21	-	7.86207	9.54e-05	0.0413	AGCCACTCCCATGC
KLF14	WILDTYPE__Lincrna.noflip.NA__chr2:127065999..127066113,+__396.1.0.0	29	42	-	7.86207	9.54e-05	0.0413	GGCTCCACCCCCAC
KLF14	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	43	56	-	7.86207	9.54e-05	0.0413	GGCGCCGCCCCCGC
KLF14	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	59	72	+	7.86207	9.54e-05	0.0413	GGCGCCGCCCCCGC
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.0	82	95	-	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
KLF14	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.3.1	82	95	-	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.0.0	82	95	-	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.1.0	82	95	-	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
KLF14	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr11:118868677..118868791,-__157.1.2.0	82	95	-	7.86207	9.54e-05	0.0413	TAACCCGCCCAGCT
Tcf21	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	5	18	+	5.15789	9.54e-05	0.574	CAGACCGCTGGTAG
Gata4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	40	50	-	10.8966	9.54e-05	1	TGTTATCTGTA
Gata4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	40	50	-	10.8966	9.54e-05	1	TGTTATCTGTA
Gata4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	40	50	-	10.8966	9.54e-05	1	TGTTATCTGTA
Gata4	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	89	99	+	10.8966	9.54e-05	1	TGTTATCTGTA
HNF4G	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	17	31	-	10.1154	9.54e-05	0.386	CAGGGACAGGGGGCA
HNF4G	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	17	31	-	10.1154	9.54e-05	0.386	CAGGGACAGGGGGCA
GLIS2	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	60	73	-	7.2459	9.54e-05	0.189	TCCCTCCCGCCGCG
MAX	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	+	11.6154	9.54e-05	0.327	TCCACGTGTT
MAX	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	+	11.6154	9.54e-05	0.327	TCCACGTGTT
MAX	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	-	11.6154	9.54e-05	0.327	TCCACGTGTT
E2F6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	19	29	-	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	19	29	-	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	FLIPPED__mrna.flip.antisense__chr8:142011228..142011342,+__2467.1.0.0	69	79	-	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE__Enhancer.noflip.NA__chr14:55574623..55574737,+__1949.1.0.0	3	13	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.0.0	36	46	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:142011228..142011342,-__1113.1.1.0	36	46	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.0	65	75	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.0.0	65	75	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.3.1	65	75	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.1.0	65	75	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
E2F6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr13:45915489..45915603,+__266.1.2.0	65	75	+	10.1379	9.54e-05	0.0878	GCGTGGGAGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	46	58	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	46	58	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	46	58	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	99	111	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	99	111	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	99	111	+	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	4	16	-	9.42623	9.54e-05	0.0589	GGCCGGAAGGGCT
MEF2A	WILDTYPE__Enhancer.noflip.NA__chr9:117716283..117716397,-__2215.1.0.0	80	91	+	8.01613	9.54e-05	1	CCTATAAACAGA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr22:19159115..19159229,-__2286.1.0.0	22	31	+	10.7308	9.54e-05	0.129	CTCGGAAGTT
ETV6	FLIPPED__Lincrna.flip.antisense__chr2:177502302..177502416,+__2379.1.0.0	32	41	+	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	33	42	+	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	33	42	+	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	FLIPPED__Antisense.flip.antisense__chr15:83419244..83419358,-__2650.1.0.0	85	94	+	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:116961180..116961294,-__8.1.0.0	88	97	+	10.7308	9.54e-05	0.129	CCCGGAAGCT
ETV6	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	88	97	+	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	FLIPPED__Lincrna.flip.antisense__chr6:4021366..4021480,+__2419.1.0.0	92	101	+	10.7308	9.54e-05	0.129	CCCGGAAGCT
ETV6	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	9	18	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.1.0	14	23	-	10.7308	9.54e-05	0.129	CCCGGAAGCT
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr6:4021366..4021480,-__751.1.0.0	14	23	-	10.7308	9.54e-05	0.129	CCCGGAAGCT
ETV6	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	18	27	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.1.0	21	30	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:83419244..83419358,+__335.1.0.0	21	30	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	30	39	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	30	39	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	40	49	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	40	49	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	40	49	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	40	49	-	10.7308	9.54e-05	0.129	CCCGGAAGGG
ETV6	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	65	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE__Antisense.noflip.NA__chr20:32582199..32582313,-__470.1.0.0	63	72	-	10.7308	9.54e-05	0.129	CTCGGAAGTT
ETV6	WILDTYPE__Lincrna.flip.sense__chr2:177502302..177502416,-__411.1.0.0	74	83	-	10.7308	9.54e-05	0.129	AGAGGAAGTC
ETV6	WILDTYPE__Enhancer.noflip.NA__chr22:19159100..19159214,+__1993.1.0.0	99	108	-	10.7308	9.54e-05	0.129	CTCGGAAGTT
TFAP4	FLIPPED__Antisense.flip.antisense__chr20:43024267..43024381,+__2384.1.0.0	13	22	+	9.92727	9.54e-05	0.655	GCCAGCTGGT
TFAP4	WILDTYPE__Antisense.flip.sense__chr20:43024267..43024381,-__476.1.0.0	93	102	-	9.92727	9.54e-05	0.655	GCCAGCTGGT
TFAP4	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	97	106	-	9.92727	9.54e-05	0.655	GCCAGCTGGT
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.0.0	6	20	+	7.31148	9.55e-05	0.0731	CGCCCCGCCCCCAGG
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	17	31	-	7.31148	9.55e-05	0.0731	GACCAAGCCTTCAAC
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	17	31	-	7.31148	9.55e-05	0.0731	GACCAAGCCTTCAAC
Stat6	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	41	55	+	10.1034	9.55e-05	0.867	TTCTTCTGAGGAAAA
EGR3	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	11	25	+	5.27586	9.55e-05	0.0418	CCTCACCCACCCACA
MEF2D	WILDTYPE__Lincrna.flip.sense__chr11:65266436..65266550,+__192.1.0.0	48	59	+	5.18182	9.55e-05	1	TCTATAAATACG
MEF2D	FLIPPED__Lincrna.flip.antisense__chr11:65266436..65266550,-__2636.1.0.0	56	67	-	5.18182	9.55e-05	1	TCTATAAATACG
HEY2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	25	34	-	10.3621	9.55e-05	0.233	CACACGTGCA
HEY2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	81	90	+	10.3621	9.55e-05	0.233	CACACGTGCA
HEY2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	81	90	+	10.3621	9.55e-05	0.233	CACACGTGCA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	9	22	-	4.5102	9.55e-05	0.0784	GGGGCTGTCGGGAA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	78	91	-	4.5102	9.55e-05	0.0784	GGGGCTGTCGGGAA
PLAG1	WILDTYPE__Lincrna.noflip.NA__chr8:100025222..100025336,-__823.1.0.0	29	42	+	4.5102	9.55e-05	0.0784	GGTGTCTAAGGGGG
Spz1	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	35	45	+	10.7	9.55e-05	0.797	AGGGTTGGAGA
Spz1	WILDTYPE__mrna.noflip.NA__chr14:78083089..78083203,-__1325.1.0.0	72	82	-	10.7	9.55e-05	0.797	AGGGAAAAAGC
Klf1	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	3	13	+	10.0606	9.55e-05	0.0596	TGCACCACCCA
Klf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.1.0	26	36	+	10.0606	9.55e-05	0.0596	CACCCCTCCCT
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:6291398..6291512,-__2237.1.0.0	26	36	+	10.0606	9.55e-05	0.0596	CACCCCTCCCT
Klf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.1	72	82	-	10.0606	9.55e-05	0.0596	TGCACCACCCA
Klf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.0.0	72	82	-	10.0606	9.55e-05	0.0596	TGCACCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.1.0	72	82	-	10.0606	9.55e-05	0.0596	TGCACCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.2.0	72	82	-	10.0606	9.55e-05	0.0596	TGCACCACCCA
Klf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:19577983..19578097,-__1377.1.3.0	72	82	-	10.0606	9.55e-05	0.0596	TGCACCACCCA
Nfe2l2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	97	111	-	8.98485	9.55e-05	0.368	GAGACTGAGTAGGCA
Nfe2l2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	97	111	-	8.98485	9.55e-05	0.368	GAGACTGAGTAGGCA
ZIC4	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	95	109	-	9.67273	9.55e-05	0.114	GCCCACCCATGGACC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	6	20	+	9.67273	9.55e-05	0.114	GCCCACCCATGGACC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	6	20	+	9.67273	9.55e-05	0.114	GCCCACCCATGGACC
ZIC4	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	96	110	+	9.67273	9.55e-05	0.114	TGCCTCCTGCGGCCG
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	18	37	-	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	18	37	-	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	18	37	-	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	18	37	-	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	FLIPPED__Enhancer.flip.antisense__chr12:121714973..121715087,-__2852.1.0.0	86	105	-	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	WILDTYPE__Enhancer.flip.sense__chr12:121714973..121715087,+__1853.1.0.0	10	29	+	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
RREB1	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	78	97	+	2.56881	9.55e-05	0.0764	ACCCAACGCCCCAGCCCTGA
NR2F1	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	83	95	+	10.5714	9.55e-05	0.535	CTAAGGTCAGACA
MSC	WILDTYPE__Antisense.flip.sense__chr1:31191536..31191650,+__66.1.0.0	72	81	+	9.4878	9.55e-05	0.577	GACAGCTTCT
MSC	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	103	112	+	9.4878	9.55e-05	0.577	GACAGCTTCT
MSC	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	103	112	+	9.4878	9.55e-05	0.577	GACAGCTTCT
MSC	FLIPPED__Antisense.flip.antisense__chr1:31191536..31191650,-__2622.1.0.0	34	43	-	9.4878	9.55e-05	0.577	GACAGCTTCT
RXRB	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	67	80	+	-0.672727	9.55e-05	0.587	GATGTTAAAAGTCA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	37	47	+	10.6346	9.55e-05	0.0765	GGCCTCAGGGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.1.0	40	50	+	10.6346	9.55e-05	0.0765	GGCCTCAGGGT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.1	40	50	+	10.6346	9.55e-05	0.0765	GGCCTCAGGGT
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	68	78	-	10.6346	9.55e-05	0.0765	GGCCTCAGGGT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr21:38338679..38338793,+__505.1.0.0	99	109	+	10.6346	9.55e-05	0.0765	CGGCTCAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	90	100	-	10.6346	9.55e-05	0.0765	TGCCGGAAGCT
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	90	100	-	10.6346	9.55e-05	0.0765	TGCCGGAAGCT
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	39	53	-	8.54286	9.55e-05	0.122	GGGCGGGAGGGGGCG
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	3	17	+	8.54286	9.55e-05	0.122	GGGCGGGAGGGGGCG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.1.0	15	25	-	9.91379	9.55e-05	0.0524	GGGCGGGGATG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:31462631..31462745,+__1663.1.2.1	15	25	-	9.91379	9.55e-05	0.0524	GGGCGGGGATG
E2F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.1.0	34	44	-	9.91379	9.55e-05	0.0524	GGGCGGGGATG
E2F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907699..124907813,-__2147.1.0.0	34	44	-	9.91379	9.55e-05	0.0524	GGGCGGGGATG
FOS	WILDTYPE__Enhancer.noflip.NA__chr20:48391968..48392082,+__1997.1.0.0	76	86	+	10.7447	9.55e-05	0.287	CATGAGTCATT
HSF1	WILDTYPE__mrna.noflip.NA__chr12:1192239..1192353,+__995.1.0.0	85	97	+	5.95082	9.55e-05	1	TTCTAGCACATGC
MAFK	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.0.0	60	74	+	10.4	9.55e-05	1	GTAAGTCAGCACTGA
MAFK	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:130031310..130031424,-__1717.1.1.0	60	74	+	10.4	9.55e-05	1	GTAAGTCAGCACTGA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.0.0	12	22	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:135192695..135192809,+__1442.1.1.0	12	22	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE__mrna.flip.sense__chr7:100202440..100202554,+__1104.1.0.0	3	13	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.1.0	17	27	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:95285851..95285965,+__1143.1.0.0	17	27	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.0.0	18	28	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:138799602..138799716,+__903.1.1.0	18	28	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	34	44	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	34	44	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	33	43	-	9.82759	9.55e-05	0.0268	GTCCCGCCTCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	33	43	-	9.82759	9.55e-05	0.0268	GTCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	33	43	-	9.82759	9.55e-05	0.0268	GTCCCGCCTCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	50	60	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	50	60	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	50	60	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	50	60	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.0.0	52	62	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.1.0	52	62	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.0	52	62	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr16:54963049..54963163,-__346.1.2.1	52	62	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	71	81	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr1:95285851..95285965,-__2771.1.0.0	88	98	-	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
KLF16	FLIPPED__mrna.flip.antisense__chr7:100202440..100202554,-__2760.1.0.0	102	112	+	9.82759	9.55e-05	0.0268	GCCCCTCCCCG
TFAP2B	FLIPPED__mrna.flip.antisense__chr2:65454829..65454943,-__2753.1.0.0	29	40	+	10.6727	9.56e-05	0.0953	CGCCGCCGGGCT
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	39	50	+	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	39	50	+	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	63	74	+	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.1.0	11	22	-	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:37939973..37940087,-__71.1.0.0	11	22	-	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	40	-	10.6727	9.56e-05	0.0953	CGCCCCCGGGGC
TFAP2B	WILDTYPE__mrna.flip.sense__chr2:65454829..65454943,+__1062.1.0.0	75	86	-	10.6727	9.56e-05	0.0953	CGCCGCCGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	91	103	+	8.82759	9.56e-05	0.0581	GGCCGTGGAGGCG
Crem	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.1.0	62	71	+	11.377	9.56e-05	0.342	TGTTACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	62	71	+	11.377	9.56e-05	0.342	TGTTACGTCA
Crem	WILDTYPE__Lincrna.noflip.NA__chr14:29299374..29299488,+__285.1.0.0	60	69	-	11.377	9.56e-05	0.342	AATGACGTGA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.0	32	43	+	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.2.1	32	43	+	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.0.0	32	43	+	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118901547..118901661,-__1453.1.1.0	32	43	+	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	22	33	-	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	22	33	-	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	22	33	-	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	22	33	-	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.1.0	24	35	-	10.7091	9.56e-05	0.0579	GCCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:7764678..7764792,+__2018.1.0.0	24	35	-	10.7091	9.56e-05	0.0579	GCCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	39	50	+	10.7091	9.56e-05	0.0579	AGCCCGCCGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	43	54	+	10.7091	9.56e-05	0.0579	GCCCCCCAGGCC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.1.0	36	47	-	10.7091	9.56e-05	0.0579	CGCCGTCGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:95961559..95961673,-__1701.1.0.0	36	47	-	10.7091	9.56e-05	0.0579	CGCCGTCGGGCC
TFAP2A(var.2)	WILDTYPE__Antisense.flip.sense__chr3:9988963..9989077,+__598.1.0.0	48	59	+	10.7091	9.56e-05	0.0579	TGCCCAGAGCCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr3:9988963..9989077,-__2692.1.0.0	56	67	-	10.7091	9.56e-05	0.0579	TGCCCAGAGCCA
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr21:34100395..34100509,+__501.1.0.0	57	68	-	10.7091	9.56e-05	0.0579	CGCCCGCGGGTG
TFAP2A(var.2)	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	103	114	-	10.7091	9.56e-05	0.0579	CCCCCGCCGGCC
GCM2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	14	23	+	10.6557	9.56e-05	0.726	GCTGCGGGCA
GCM2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	14	23	+	10.6557	9.56e-05	0.726	GCTGCGGGCA
GCM2	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	24	33	+	10.6557	9.56e-05	0.726	GCTGCGGGCA
GCM2	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	82	91	-	10.6557	9.56e-05	0.726	GCTGCGGGCA
GCM2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	86	95	-	10.6557	9.56e-05	0.726	GCTGCGGGCA
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	86	95	-	10.6557	9.56e-05	0.726	GCTGCGGGCA
THAP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	78	86	+	9.76316	9.56e-05	0.221	TTGCCCTGA
THAP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	78	86	+	9.76316	9.56e-05	0.221	TTGCCCTGA
THAP1	WILDTYPE__Antisense.noflip.NA__chr2:48133874..48133988,+__439.1.0.0	41	49	-	9.76316	9.56e-05	0.221	TTGCCCTGA
THAP1	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	94	102	-	9.76316	9.56e-05	0.221	TTGCCCTGA
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.1	11	22	-	10.6633	9.56e-05	0.0876	GGCCTGCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:24999088..24999202,+__1598.1.1.0	11	22	-	10.6633	9.56e-05	0.0876	GGCCTGCGGGCG
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	58	69	-	10.6633	9.56e-05	0.0876	CGCCCGGCGGCT
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	61	72	-	10.6633	9.56e-05	0.0876	GGCCTGCGGGCG
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	61	72	-	10.6633	9.56e-05	0.0876	GGCCTGCGGGCG
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	56	67	-	9.84615	9.56e-05	0.384	GGACATGGCTGC
YY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	90	101	+	9.84615	9.56e-05	0.384	GGAGATGGCGCC
YY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	90	101	+	9.84615	9.56e-05	0.384	GGAGATGGCGCC
GLIS1	WILDTYPE__mrna.noflip.NA__chr1:92495469..92495583,+__970.1.0.0	23	38	+	-11.2692	9.56e-05	0.33	GGAGCCGCCGCGGTGA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	39	55	+	2.50909	9.56e-05	0.0357	CCGGACCCGGCCCTCTT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	39	55	+	2.50909	9.56e-05	0.0357	CCGGACCCGGCCCTCTT
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	39	55	+	2.50909	9.56e-05	0.0357	CCGGACCCGGCCCTCTT
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	39	55	+	2.50909	9.56e-05	0.0357	CCGGACCCGGCCCTCTT
SP4	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	60	76	-	2.50909	9.56e-05	0.0357	CCGGACCCGGCCCTCTT
ZBED1	WILDTYPE__Enhancer.noflip.NA__chr15:60547657..60547771,-__2056.1.0.0	55	67	-	4.76364	9.56e-05	1	CAGTCGTGATTTA
Alx4	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	5	21	+	10.4156	9.56e-05	1	CTGTCTAATTAGGAGCG
ETV2	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	5	15	+	9.54098	9.56e-05	0.188	GAGCGGAAAGA
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	24	34	-	9.54098	9.56e-05	0.188	AAGAGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.1.0	45	55	+	9.54098	9.56e-05	0.188	AAGAGGAAGTG
ETV2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:38845829..38845943,-__693.1.0.0	45	55	+	9.54098	9.56e-05	0.188	AAGAGGAAGTG
ETV2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	50	60	-	9.54098	9.56e-05	0.188	AAGAGGAAGTG
ETV2	FLIPPED__Lincrna.flip.antisense__chr5:38845829..38845943,+__2409.1.0.0	60	70	-	9.54098	9.56e-05	0.188	AAGAGGAAGTG
ETV2	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	100	110	-	9.54098	9.56e-05	0.188	GAGCGGAAAGA
Ddit3::Cebpa	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	74	85	-	10.7444	9.56e-05	1	GACTGCAATGGC
Hoxb5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	13	28	-	10.5844	9.57e-05	1	TCAATAATTACCTTAA
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:65640079..65640193,-__987.1.0.0	9	19	-	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019645..43019759,-__1573.1.1.0	27	37	-	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	30	40	-	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.0.0	40	50	-	10.2545	9.57e-05	0.0718	ACCCTAAGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:76030923..76031037,-__332.1.2.0	40	50	-	10.2545	9.57e-05	0.0718	ACCCTAAGGCC
TFAP2B(var.2)	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	50	60	+	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	55	65	-	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	75	85	+	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	70	80	-	10.2545	9.57e-05	0.0718	GGCCCGCGGCT
Arntl	FLIPPED__Enhancer.flip.antisense__chr17:75954621..75954735,-__2864.1.0.0	48	57	+	10.7705	9.57e-05	0.305	TAGCACGTGA
Arntl	WILDTYPE__Enhancer.flip.sense__chr17:75954621..75954735,+__1880.1.0.0	58	67	-	10.7705	9.57e-05	0.305	TAGCACGTGA
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.1.0	5	14	-	9.20755	9.57e-05	1	TAATTCATTA
PAX3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	5	14	-	9.20755	9.57e-05	1	TAATTCATTA
PAX3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	5	14	-	9.20755	9.57e-05	1	TAATTCATTA
PAX3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.1	5	14	-	9.20755	9.57e-05	1	TAATTCATTA
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.0	36	47	+	1.17241	9.57e-05	0.298	GGGCTCGTGCCA
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	36	47	+	1.17241	9.57e-05	0.298	GGGCTCGTGCCA
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	78	89	+	1.17241	9.57e-05	0.298	GGGCTCGTGCCA
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	78	89	+	1.17241	9.57e-05	0.298	GGGCTCGTGCCA
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	11	22	-	9.72414	9.57e-05	0.365	CCGCCCCCCGCT
ZBTB7B	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	35	46	+	9.72414	9.57e-05	0.365	CCGCCCCCCGCT
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr9:86323150..86323264,+__912.1.0.0	90	104	-	9.59574	9.57e-05	0.375	GGGCATGAGGTAAGG
E2F7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	89	102	-	-6.16393	9.57e-05	1	CTCTGCCGCCATTT
E2F7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	89	102	-	-6.16393	9.57e-05	1	CTCTGCCGCCATTT
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.0.0	8	17	+	11.0449	9.57e-05	1	GGTCTGGTAC
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:237994477..237994591,+__1179.1.1.0	8	17	+	11.0449	9.57e-05	1	GGTCTGGTAC
Hand1::Tcf3	FLIPPED__Antisense.flip.antisense__chr2:237994429..237994543,+__2381.1.0.0	56	65	+	11.0449	9.57e-05	1	GGTCTGGTAC
Hand1::Tcf3	WILDTYPE__Antisense.flip.sense__chr2:237994429..237994543,-__426.1.0.0	50	59	-	11.0449	9.57e-05	1	GGTCTGGTAC
Hand1::Tcf3	FLIPPED__mrna.flip.antisense__chr2:237994477..237994591,-__2787.1.0.0	98	107	-	11.0449	9.57e-05	1	GGTCTGGTAC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.0.0	56	69	+	8.98077	9.57e-05	0.529	AGTTCCGCGTCGTC
XBP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219134825..219134939,-__1559.1.1.0	56	69	+	8.98077	9.57e-05	0.529	AGTTCCGCGTCGTC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	9	22	+	5.28049	9.57e-05	0.537	GGAGCGCACGCCAC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	9	22	+	5.28049	9.57e-05	0.537	GGAGCGCACGCCAC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	41	54	+	5.28049	9.57e-05	0.537	GGAGCGCACGCCAC
MTF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	41	54	+	5.28049	9.57e-05	0.537	GGAGCGCACGCCAC
E2F8	WILDTYPE__Enhancer.noflip.NA__chr10:98476306..98476420,-__2046.1.0.0	8	19	+	2.92683	9.57e-05	0.631	TTTCCCCCATAT
E2F8	WILDTYPE__Enhancer.noflip.NA__chr10:98476368..98476482,+__1753.1.0.0	34	45	-	2.92683	9.57e-05	0.631	TTTCCCCCATAT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	51	62	+	10.7717	9.57e-05	1	GTTTTTTTGTTT
Foxd3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.0.0	59	70	+	10.7717	9.57e-05	1	GTTTTTTTGTTT
Foxd3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:12493279..12493393,-__2024.1.1.0	59	70	+	10.7717	9.57e-05	1	GTTTTTTTGTTT
Npas2	WILDTYPE__Antisense.noflip.NA__chr12:6560633..6560747,-__245.1.0.0	54	63	+	11.0164	9.57e-05	0.348	GTCACGTGTA
NFIX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.1	83	91	-	10.1915	9.57e-05	0.758	CTTGCCAAA
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.1.0	83	91	-	10.1915	9.57e-05	0.758	CTTGCCAAA
NFIX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.2.0	83	91	-	10.1915	9.57e-05	0.758	CTTGCCAAA
NFIX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131903859..131903973,+__1708.1.0.0	83	91	-	10.1915	9.57e-05	0.758	CTTGCCAAA
ZIC1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	15	28	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.1.0	18	31	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:146989664..146989778,-__17.1.0.0	18	31	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	19	32	-	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	83	96	+	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
ZIC1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	87	100	+	5.25532	9.57e-05	0.106	CACATCCTGCTGAT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.0	1	10	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.1.0	1	10	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.0.0	1	10	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495029..24495143,+__1654.1.2.1	1	10	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.1	29	38	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.1.0	29	38	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.2.0	29	38	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.0.0	29	38	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:24495001..24495115,+__1653.1.3.0	29	38	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	52	61	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	55	64	-	10.0204	9.57e-05	0.0303	AGGGTGTGTT
Klf4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	59	68	-	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	72	81	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Klf4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	72	81	+	10.0204	9.57e-05	0.0303	AGGGCGGCGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	+	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	9.80645	9.57e-05	0.0517	GTCACGTGGC
Tcfl5	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	-	9.80645	9.57e-05	0.0517	GCCACGTGAC
Rarg(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	30	46	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	30	46	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	30	46	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	30	46	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	30	46	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	62	78	+	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	37	53	-	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	37	53	-	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	37	53	-	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Rarg(var.2)	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	69	85	-	-7.47273	9.57e-05	1	AAGTTCATCCGCGGCCC
Hic1	WILDTYPE__Lincrna.noflip.NA__chr11:62621400..62621514,-__183.1.0.0	57	65	+	10.8654	9.57e-05	0.531	ATGCCACCA
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr2:97151793..97151907,-__2291.1.0.0	19	32	+	10.4038	9.57e-05	0.252	GTGTAATGAATCAT
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	67	80	-	10.4038	9.57e-05	0.252	CAACGCTGAGTCAC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	32	44	+	7.2931	9.57e-05	0.195	AAGCAGGAAGAGT
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	27	39	-	7.2931	9.57e-05	0.195	AAGCAGGAAGAGT
ELF3	FLIPPED__Enhancer.flip.antisense__chr16:68271490..68271604,+__2576.1.0.0	52	64	+	7.2931	9.57e-05	0.195	CCCCCGGAAGCGG
ELF3	WILDTYPE__Enhancer.flip.sense__chr16:68271490..68271604,-__2165.1.0.0	51	63	-	7.2931	9.57e-05	0.195	CCCCCGGAAGCGG
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.0.0	3	12	+	10	9.58e-05	0.0553	GCACCCCCAA
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.0	3	12	+	10	9.58e-05	0.0553	GCACCCCCAA
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr13:79980346..79980460,+__274.1.1.1	3	12	+	10	9.58e-05	0.0553	GCACCCCCAA
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	7	16	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	7	16	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	12	21	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.1.0	8	17	-	10	9.58e-05	0.0553	GCACCCCCAA
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124086630..124086744,+__996.1.0.0	8	17	-	10	9.58e-05	0.0553	GCACCCCCAA
ZNF740	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	21	30	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	16	25	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:160471774..160471888,+__402.1.1.0	20	29	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	30	39	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	30	39	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	30	39	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	30	39	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	30	39	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	23	32	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	32	41	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	32	41	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	24	33	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	26	35	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	26	35	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	26	35	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	26	35	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	28	37	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	29	38	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	29	38	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	30	39	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	46	55	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	38	47	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	38	47	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	48	57	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	61	70	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	70	79	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	64	73	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	64	73	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	76	85	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	77	86	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	69	78	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	69	78	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	82	91	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	90	99	+	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	99	108	-	10	9.58e-05	0.0553	CCCCCCCGCC
ZNF740	FLIPPED__Antisense.flip.antisense__chr13:79980346..79980460,-__2643.1.0.0	103	112	-	10	9.58e-05	0.0553	GCACCCCCAA
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	78	87	-	10.8909	9.58e-05	0.142	ACCGGAAGAA
ETV5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	78	87	-	10.8909	9.58e-05	0.142	ACCGGAAGAA
EGR4	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	2	17	+	9.6	9.58e-05	0.0418	TCCCGCGCCCCCGCTC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	7	22	-	9.6	9.58e-05	0.0418	CCCCGCCCCGCCCCTC
EGR4	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	17	32	-	9.6	9.58e-05	0.0418	CGCGGCCCCCGCCCCT
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	48	63	-	9.6	9.58e-05	0.0418	CCCCTCCCTCGCCAGC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	48	63	-	9.6	9.58e-05	0.0418	CCCCTCCCTCGCCAGC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	48	63	-	9.6	9.58e-05	0.0418	CCCCTCCCTCGCCAGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	48	63	-	9.6	9.58e-05	0.0418	CCCCTCCCTCGCCAGC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	61	76	-	9.6	9.58e-05	0.0418	CCACCCCCGCCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	61	76	-	9.6	9.58e-05	0.0418	CCACCCCCGCCCCCTC
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	83	98	+	9.6	9.58e-05	0.0418	CGCGGCCCCCGCCCCT
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	83	98	+	9.6	9.58e-05	0.0418	CGCGGCCCCCGCCCCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	44	55	-	10.1461	9.58e-05	1	AGAACAGCTTGT
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	44	55	-	10.1461	9.58e-05	1	AGAACAGCTTGT
ERG	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	17	26	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	FLIPPED__Lincrna.flip.antisense__chr5:33440705..33440819,+__2408.1.0.0	44	53	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	FLIPPED__Lincrna.flip.antisense__chr1:22351918..22352032,-__2620.1.0.0	45	54	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	57	66	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	57	66	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	57	66	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	58	67	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	58	67	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	58	67	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	58	67	+	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	67	76	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	67	76	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	67	76	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	67	76	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	67	76	+	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	61	70	-	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.0.0	61	70	-	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE__Lincrna.flip.sense__chr5:33440705..33440819,-__688.1.0.0	62	71	-	10.9091	9.58e-05	0.152	CCCGGAAGTT
ERG	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	72	81	-	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	72	81	-	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	72	81	-	10.9091	9.58e-05	0.152	ACAGGAAATT
ERG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	72	81	-	10.9091	9.58e-05	0.152	ACAGGAAATT
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:956631..956745,+__1843.1.0.0	11	21	+	10.0385	9.58e-05	0.0216	CTTCCTCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr10:76585246..76585360,+__977.1.0.0	8	18	-	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	19	29	-	10.0385	9.58e-05	0.0216	GCACCGCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	19	29	-	10.0385	9.58e-05	0.0216	GCACCGCCCCG
SP1	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	21	31	-	10.0385	9.58e-05	0.0216	GCACCGCCCCG
SP1	WILDTYPE__Lincrna.noflip.NA__chr17:41466182..41466296,-__361.1.0.0	28	38	-	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	54	64	+	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
SP1	WILDTYPE__Enhancer.noflip.NA__chr1:956585..956699,-__2136.1.0.0	48	58	-	10.0385	9.58e-05	0.0216	CTTCCTCCCCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	61	71	+	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	62	72	+	10.0385	9.58e-05	0.0216	TTCCCTCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	62	72	+	10.0385	9.58e-05	0.0216	TTCCCTCCTTC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	70	80	+	10.0385	9.58e-05	0.0216	GCACCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	70	80	+	10.0385	9.58e-05	0.0216	GCACCGCCCCG
SP1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	79	89	+	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
SP1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	79	89	+	10.0385	9.58e-05	0.0216	CCTCCTCCTCG
KLF5	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	24	33	+	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	30	39	+	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	WILDTYPE__mrna.noflip.NA__chr4:109090053..109090167,-__1334.1.0.0	22	31	-	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	32	41	-	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	32	41	-	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr12:7261157..7261271,+__252.1.0.0	72	81	+	10.3673	9.58e-05	0.0294	TCTCCTCCCT
KLF5	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	82	91	-	10.3673	9.58e-05	0.0294	TCTCCTCCCT
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.1.0	9	18	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:177053244..177053358,-__410.1.0.0	9	18	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	23	32	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	23	32	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	23	32	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	23	32	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE__Enhancer.flip.sense__chr2:241796909..241797023,+__1957.1.0.0	29	38	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	32	41	-	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	32	41	-	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	32	41	-	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	FLIPPED__Enhancer.flip.antisense__chr12:121714905..121715019,+__2568.1.0.0	35	44	-	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE__Lincrna.noflip.NA__chr7:130598098..130598212,-__779.1.0.0	60	69	-	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.1.0	71	80	+	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.0.0	71	80	+	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.1	71	80	+	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr12:121714905..121715019,-__2146.1.2.0	71	80	+	11.061	9.58e-05	0.199	GCCACGTGCC
TFEC	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	FLIPPED__Enhancer.flip.antisense__chr2:241796909..241797023,-__2891.1.0.0	77	86	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	83	92	-	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	+	11.061	9.58e-05	0.199	GCCACGTGGC
TFEC	FLIPPED__Antisense.flip.antisense__chr2:177053244..177053358,+__2378.1.0.0	97	106	-	11.061	9.58e-05	0.199	GCCACGTGGC
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.0.0	8	18	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:48481587..48481701,+__1621.1.1.0	8	18	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.0	21	31	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.1.0	21	31	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.0.0	21	31	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840940..113841054,+__1956.1.2.1	21	31	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	FLIPPED__Antisense.flip.antisense__chr2:3605981..3606095,-__2670.1.0.0	35	45	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	40	50	+	10.1967	9.58e-05	0.0794	GCGGAAGGGCT
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	40	50	+	10.1967	9.58e-05	0.0794	GCGGAAGGGCT
Gabpa	WILDTYPE__Antisense.flip.sense__chr2:3605981..3606095,+__434.1.0.0	70	80	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.0.0	78	88	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.1	78	88	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.1.0	78	88	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:113840934..113841048,-__2249.1.2.0	78	88	-	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
Gabpa	FLIPPED__mrna.flip.antisense__chr3:48481587..48481701,-__2823.1.0.0	97	107	+	10.1967	9.58e-05	0.0794	CAGGAAGTTGA
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	11	23	+	7.15152	9.58e-05	0.265	AGGGGCAGCTCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	11	23	+	7.15152	9.58e-05	0.265	AGGGGCAGCTCCT
NFKB2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	11	23	+	7.15152	9.58e-05	0.265	AGGGGCAGCTCCT
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	11	23	+	7.15152	9.58e-05	0.265	AGGGGCAGCTCCT
CTCF	WILDTYPE__mrna.noflip.NA__chr14:58618880..58618994,-__1267.1.0.0	79	97	+	7.86885	9.58e-05	0.136	CAGACAGCGGAGGGAGTCG
Myod1	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	26	38	+	10.8571	9.58e-05	0.202	CCCAGCTGGCCCA
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	87	99	-	10.8571	9.58e-05	0.202	CTCACCTGTGGCT
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	87	99	-	10.8571	9.58e-05	0.202	CTCACCTGTGGCT
GLIS3	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	34	47	+	2.5303	9.58e-05	0.395	GACCGCCCACGTCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	9	19	+	10.5285	9.58e-05	0.0284	CCCCCGCCTTC
SP3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	9	19	+	10.5285	9.58e-05	0.0284	CCCCCGCCTTC
SP3	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	28	38	+	10.5285	9.58e-05	0.0284	TTCCCGCCCCC
SP3	WILDTYPE__Antisense.noflip.NA__chr15:44828840..44828954,-__318.1.0.0	33	43	+	10.5285	9.58e-05	0.0284	CCAACGCCTAC
SP3	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	87	97	+	10.5285	9.58e-05	0.0284	CCCCCGCCTCG
SP3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	92	102	+	10.5285	9.58e-05	0.0284	CCCCCGCCTTC
SP3	FLIPPED__Lincrna.flip.antisense__chr21:46707917..46708031,-__2681.1.0.0	93	103	+	10.5285	9.58e-05	0.0284	CTCCCGCCCCT
SP3	WILDTYPE__Lincrna.flip.sense__chr21:46707917..46708031,+__509.1.0.0	12	22	-	10.5285	9.58e-05	0.0284	CTCCCGCCCCT
SP3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	13	23	-	10.5285	9.58e-05	0.0284	CCCCCGCCTTC
SP3	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	18	28	-	10.5285	9.58e-05	0.0284	CCCCCGCCTCG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	57	67	-	10.5285	9.58e-05	0.0284	CCCCCGCCTCG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	57	67	-	10.5285	9.58e-05	0.0284	CCCCCGCCTCG
SP3	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	96	106	-	10.5285	9.58e-05	0.0284	CCCCCGCCTTC
SPIC	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	48	61	-	10.2676	9.58e-05	0.313	GAAATCAGGAAAAA
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	48	61	-	10.2676	9.58e-05	0.313	GAAATCAGGAAAAA
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:28143527..28143641,+__1785.1.0.0	18	32	-	8.75758	9.58e-05	0.359	TAGCTTCCTGTTTTC
STAT1::STAT2	WILDTYPE__Enhancer.noflip.NA__chr2:28143515..28143629,-__2078.1.0.0	71	85	+	8.75758	9.58e-05	0.359	TAGCTTCCTGTTTTC
STAT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.0.0	33	43	-	10.4898	9.58e-05	0.352	TTTCCTGAAAT
STAT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:55574540..55574654,-__2242.1.1.0	33	43	-	10.4898	9.58e-05	0.352	TTTCCTGAAAT
EWSR1-FLI1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	20	37	+	-16.1842	9.58e-05	0.0561	CGAGGGGAGGGAGCACGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	46	63	-	-16.1842	9.58e-05	0.0561	GGGAAGGAGGACGCTGAG
EWSR1-FLI1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	78	95	-	-16.1842	9.58e-05	0.0561	CGAGGGGAGGGAGCACGC
PAX5	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	17	35	-	9.8871	9.59e-05	0.157	GAAAGCAGCCGGCCCGGTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	11	23	+	8.95082	9.59e-05	0.0652	TGCCGTAAAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	11	23	+	8.95082	9.59e-05	0.0652	TGCCGTAAAGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	23	35	+	8.95082	9.59e-05	0.0652	GGCCCGCTGGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	45	57	+	8.95082	9.59e-05	0.0652	TGCCGTAAAGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	45	57	+	8.95082	9.59e-05	0.0652	TGCCGTAAAGGCC
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr7:104653459..104653573,-__766.1.0.0	52	64	+	8.95082	9.59e-05	0.0652	AGCCGTAGGGGGA
TFAP2B(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	55	67	+	8.95082	9.59e-05	0.0652	AGCCCGGCAGGGC
ZBTB18	WILDTYPE__Antisense.noflip.NA__chr1:32539040..32539154,-__68.1.0.0	15	27	-	8.82857	9.59e-05	0.769	CTGACAGTTGTGT
ELK4	WILDTYPE__mrna.flip.sense__chr22:39077900..39078014,+__1189.1.0.0	13	23	-	10.5455	9.59e-05	0.0793	GCTTTTCCGGG
ELK4	FLIPPED__Enhancer.flip.antisense__chr5:131832669..131832783,-__2878.1.0.0	16	26	-	10.5455	9.59e-05	0.0793	GAGTTTCCGGG
ELK4	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	22	32	-	10.5455	9.59e-05	0.0793	TTCCTTCCGGT
ELK4	FLIPPED__Antisense.flip.antisense__chr22:39077826..39077940,+__2388.1.0.0	87	97	-	10.5455	9.59e-05	0.0793	GCTTTTCCGGG
ELK4	WILDTYPE__Antisense.flip.sense__chr22:39077826..39077940,-__526.1.0.0	18	28	+	10.5455	9.59e-05	0.0793	GCTTTTCCGGG
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.0.0	89	99	+	10.5455	9.59e-05	0.0793	GAGTTTCCGGG
ELK4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:131832669..131832783,+__1907.1.1.0	89	99	+	10.5455	9.59e-05	0.0793	GAGTTTCCGGG
ELK4	FLIPPED__mrna.flip.antisense__chr22:39077900..39078014,-__2790.1.0.0	92	102	+	10.5455	9.59e-05	0.0793	GCTTTTCCGGG
mix-a	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	92	102	+	11.5238	9.59e-05	1	GTCTAATTAGT
HEY1	WILDTYPE__Lincrna.noflip.NA__chr20:18774588..18774702,-__458.1.0.0	12	21	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.0.0	5	14	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:113499003..113499117,+__5.1.1.0	5	14	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__mrna.noflip.NA__chr21:46237940..46238054,-__1316.1.0.0	12	21	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__Antisense.noflip.NA__chr10:89102312..89102426,-__143.1.0.0	14	23	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.1.0	18	27	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009143..110009257,+__1413.1.0.0	18	27	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	31	40	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	27	36	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	30	39	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	30	39	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__mrna.flip.sense__chr5:43603208..43603322,+__1206.1.0.0	42	51	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__Enhancer.noflip.NA__chr9:98273068..98273182,+__1928.1.0.0	35	44	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE__Enhancer.noflip.NA__chr9:98273046..98273160,-__2221.1.0.0	49	58	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	45	54	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	45	54	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	48	57	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	48	57	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	48	57	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	48	57	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.1	48	57	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	49	58	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	49	58	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.1.0	50	59	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:110009111..110009225,+__1412.1.0.0	50	59	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	61	70	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	62	71	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	FLIPPED__mrna.flip.antisense__chr5:43603208..43603322,-__2797.1.0.0	64	73	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	79	88	+	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	75	84	-	10.7636	9.59e-05	0.173	GTCACGTGGC
HEY1	FLIPPED__Antisense.flip.antisense__chr1:113499003..113499117,-__2612.1.0.0	101	110	+	10.7636	9.59e-05	0.173	GTCACGTGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50342708..50342822,+__1965.1.1.0	15	27	+	9.40984	9.59e-05	0.0589	TGCCCTCTTGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	39	51	+	9.40984	9.59e-05	0.0589	CGCCCGTGCGGCT
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	39	51	+	9.40984	9.59e-05	0.0589	CGCCCGTGCGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	42	54	+	9.40984	9.59e-05	0.0589	CGCCACGCGGGCC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	68	80	+	9.40984	9.59e-05	0.0589	CGCCCTTTGGGGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	3	15	-	9.40984	9.59e-05	0.0589	TGCCACGAAGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	35	47	-	9.40984	9.59e-05	0.0589	CGCCCTTTGGGGC
TFAP2A(var.3)	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	61	73	-	9.40984	9.59e-05	0.0589	CGCCACGCGGGCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.0.0	63	75	-	9.40984	9.59e-05	0.0589	AGCCTCGGAGGCC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:105172602..105172716,+__1674.1.1.0	63	75	-	9.40984	9.59e-05	0.0589	AGCCTCGGAGGCC
TFAP2A(var.3)	WILDTYPE__mrna.noflip.NA__chr14:31091445..31091559,+__1322.1.0.0	68	80	-	9.40984	9.59e-05	0.0589	TGCCCGGCTGGGG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.1.0	7	17	+	10.7818	9.59e-05	0.0577	AGCCTGACGCA
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:80714245..80714359,+__1103.1.0.0	7	17	+	10.7818	9.59e-05	0.0577	AGCCTGACGCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr5:141016908..141017022,+__1282.1.0.0	9	19	-	10.7818	9.59e-05	0.0577	CCCCCGGGGCA
TFAP2A	WILDTYPE__Lincrna.noflip.NA__chr7:39773092..39773206,+__807.1.0.0	30	40	+	10.7818	9.59e-05	0.0577	CCCCCGGGGCA
TFAP2A	WILDTYPE__mrna.noflip.NA__chr15:77287415..77287529,+__1027.1.0.0	32	42	-	10.7818	9.59e-05	0.0577	CCCCCGGGGCA
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr1:90098430..90098544,+__2334.1.0.0	31	42	-	10.6774	9.59e-05	0.281	GAGACCACCTCG
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr1:90098430..90098544,-__94.1.0.0	73	84	+	10.6774	9.59e-05	0.281	GAGACCACCTCG
MYBL1	WILDTYPE__Enhancer.noflip.NA__chr15:52580787..52580901,+__1868.1.0.0	47	58	+	9.10345	9.59e-05	1	AGAGTTAACTTT
ZBTB33	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	48	62	-	9.5303	9.59e-05	0.132	CTTCCGCGAGGCCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	48	62	-	9.5303	9.59e-05	0.132	CTTCCGCGAGGCCGG
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	50	64	+	9.5303	9.59e-05	0.132	GCCTCGCGCCGTCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	50	64	+	9.5303	9.59e-05	0.132	GCCTCGCGCCGTCGC
EGR1	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	37	50	-	9.5	9.59e-05	0.0316	TCTCAGCCCCCGGG
EGR1	WILDTYPE__mrna.noflip.NA__chr5:1524039..1524153,-__1263.1.0.0	83	96	+	9.5	9.59e-05	0.0316	CTCCAGCCGCCGCG
TBX20	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	25	35	-	10.0303	9.59e-05	1	AATGTGTGAGG
TBX20	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	80	90	+	10.0303	9.59e-05	1	AATGTGTGAGG
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	17	-	8.85246	9.6e-05	0.744	CGGTGACGTAAGA
ATF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	17	-	8.85246	9.6e-05	0.744	CGGTGACGTAAGA
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	17	-	8.85246	9.6e-05	0.744	CGGTGACGTAAGA
ATF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	17	-	8.85246	9.6e-05	0.744	CGGTGACGTAAGA
ATF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	17	-	8.85246	9.6e-05	0.744	CGGTGACGTAAGA
USF1	WILDTYPE__Enhancer.flip.sense__chr6:14735225..14735339,+__1914.1.0.0	5	15	-	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	FLIPPED__Enhancer.flip.antisense__chr6:14735224..14735338,+__2598.1.0.0	6	16	-	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	15	25	-	10.2857	9.6e-05	0.239	TGCACATGACC
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	15	25	-	10.2857	9.6e-05	0.239	TGCACATGACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	76	86	-	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	76	86	-	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	58	68	+	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	58	68	+	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	WILDTYPE__Enhancer.flip.sense__chr6:14735224..14735338,-__2207.1.0.0	99	109	+	10.2857	9.6e-05	0.239	TTCATGTGACA
USF1	FLIPPED__Enhancer.flip.antisense__chr6:14735225..14735339,-__2882.1.0.0	100	110	+	10.2857	9.6e-05	0.239	TTCATGTGACA
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	36	49	-	7.22951	9.6e-05	0.189	CGCCCCCTTCGGCC
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	36	49	-	7.22951	9.6e-05	0.189	CGCCCCCTTCGGCC
GLIS2	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	66	79	+	7.22951	9.6e-05	0.189	CGCCCCCTTCGGCC
ELF1	FLIPPED__Lincrna.flip.antisense__chr20:37075235..37075349,-__2676.1.0.0	23	34	+	7.96364	9.6e-05	0.138	CCCGCGGAAATA
ELF1	WILDTYPE__Lincrna.flip.sense__chr20:37075235..37075349,+__474.1.0.0	81	92	-	7.96364	9.6e-05	0.138	CCCGCGGAAATA
HINFP	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	6	17	+	9.98485	9.6e-05	0.111	CCAGCTCCGCGC
HINFP	WILDTYPE__mrna.noflip.NA__chr9:90112523..90112637,+__1125.1.0.0	95	106	-	9.98485	9.6e-05	0.111	CCAGCTCCGCGC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	98	109	-	9.98485	9.6e-05	0.111	CCAGCTCCGCGC
HINFP	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	98	109	-	9.98485	9.6e-05	0.111	CCAGCTCCGCGC
Zfx	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	36	49	+	9.92424	9.6e-05	0.0688	GGGGGCCAGCCCTC
Zfx	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	36	49	+	9.92424	9.6e-05	0.0688	GGGGGCCAGCCCTC
Zfx	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	29	42	-	9.92424	9.6e-05	0.0688	GGGGCGGCGGCCTT
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	31	51	+	8.06452	9.6e-05	0.19	TCCCTTTTCCTTTTTCCTTTT
IRF1	WILDTYPE__mrna.noflip.NA__chr12:75905346..75905460,-__1376.1.0.0	44	64	+	8.06452	9.6e-05	0.19	GAACAGTTTCATTTCCGGAGC
IRF1	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	41	61	-	8.06452	9.6e-05	0.19	TGTTGGTTTTTCTTATTGTTT
EGR3	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	1	15	-	5.25862	9.6e-05	0.0418	TTCTCCCCACGCGCA
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.1.0	17	31	+	5.25862	9.6e-05	0.0418	TTCTCCCCACGCGCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:24104828..24104942,+__1138.1.0.0	17	31	+	5.25862	9.6e-05	0.0418	TTCTCCCCACGCGCA
EGR3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	40	54	-	5.25862	9.6e-05	0.0418	CACCCCCCACCCCCA
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	57	71	-	5.25862	9.6e-05	0.0418	GGACGCTCGCGCACG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	57	71	-	5.25862	9.6e-05	0.0418	GGACGCTCGCGCACG
EGR3	FLIPPED__mrna.flip.antisense__chr1:24104828..24104942,-__2768.1.0.0	84	98	-	5.25862	9.6e-05	0.0418	TTCTCCCCACGCGCA
EGR3	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	100	114	+	5.25862	9.6e-05	0.0418	TTCTCCCCACGCGCA
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.1	35	49	+	9.71154	9.6e-05	0.238	TGCTCGTCCAATCAC
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.2.0	35	49	+	9.71154	9.6e-05	0.238	TGCTCGTCCAATCAC
NFYB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.1.0	35	49	+	9.71154	9.6e-05	0.238	TGCTCGTCCAATCAC
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:40494765..40494879,-__578.1.0.0	35	49	+	9.71154	9.6e-05	0.238	TGCTCGTCCAATCAC
BHLHE41	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	+	7.23077	9.6e-05	0.235	GGCGCGTGCC
Klf12	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr6:10435005..10435119,-__725.1.0.0	11	25	-	7.29508	9.6e-05	0.0731	GGCCCCACTCTTATG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	22	36	-	7.29508	9.6e-05	0.0731	GACTCCGCCCTCCTG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	22	36	-	7.29508	9.6e-05	0.0731	GACTCCGCCCTCCTG
Klf12	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	51	65	+	7.29508	9.6e-05	0.0731	GACTCCGCCCATCCC
Klf12	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	47	61	-	7.29508	9.6e-05	0.0731	GGCTCCGCCCACCCT
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	50	64	-	7.29508	9.6e-05	0.0731	GACTCCGCCCATCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	50	64	-	7.29508	9.6e-05	0.0731	GACTCCGCCCATCCC
Klf12	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	50	64	-	7.29508	9.6e-05	0.0731	GACTCCGCCCATCCC
Klf12	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	50	64	-	7.29508	9.6e-05	0.0731	GACTCCGCCCATCCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.1.0	11	23	-	8.81034	9.6e-05	0.0581	GGCCTTTACGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862398..22862512,-__1675.1.0.0	11	23	-	8.81034	9.6e-05	0.0581	GGCCTTTACGGCA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.0.0	45	57	-	8.81034	9.6e-05	0.0581	GGCCTTTACGGCA
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	45	57	-	8.81034	9.6e-05	0.0581	CCCCCACCGGGCC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:22862432..22862546,-__1676.1.1.0	45	57	-	8.81034	9.6e-05	0.0581	GGCCTTTACGGCA
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.0.0	55	69	+	6.25	9.6e-05	0.297	GTCGTGACTGGGCGG
Bach1::Mafk	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:1711901..1712015,+__1114.1.1.0	55	69	+	6.25	9.6e-05	0.297	GTCGTGACTGGGCGG
Bach1::Mafk	FLIPPED__mrna.flip.antisense__chr8:1711901..1712015,-__2762.1.0.0	46	60	-	6.25	9.6e-05	0.297	GTCGTGACTGGGCGG
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.1.0	10	25	+	9.81707	9.6e-05	1	ATTCATGCATATTTGT
Pou2f3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:56752816..56752930,+__1943.1.0.0	10	25	+	9.81707	9.6e-05	1	ATTCATGCATATTTGT
Pou2f3	WILDTYPE__Enhancer.noflip.NA__chr12:56752751..56752865,-__2236.1.0.0	25	40	-	9.81707	9.6e-05	1	ATTCATGCATATTTGT
RORA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr1:198906523..198906637,-__39.1.0.0	63	76	+	6.10112	9.6e-05	1	GTAATTTAGTTCAA
IRF8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	52	65	+	-4.25455	9.6e-05	0.79	TTTAAACAGAAAGC
SOX4	WILDTYPE__Lincrna.noflip.NA__chr8:125283893..125284007,+__830.1.0.0	66	81	+	-14.6818	9.61e-05	1	CAACAGTGGCAGGGAG
SNAI2	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	26	34	-	10.7442	9.61e-05	0.56	GTCAGGTGG
SNAI2	WILDTYPE__mrna.flip.sense__chr2:46524825..46524939,+__1059.1.0.0	74	82	-	10.7442	9.61e-05	0.56	GTCAGGTGG
SNAI2	FLIPPED__mrna.flip.antisense__chr2:46524825..46524939,-__2751.1.0.0	33	41	+	10.7442	9.61e-05	0.56	GTCAGGTGG
SNAI2	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	81	89	+	10.7442	9.61e-05	0.56	GTCAGGTGG
NR2C2	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	9	23	+	8.52857	9.61e-05	0.122	AGGGAGGAAAGGTGG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	26	42	+	2.49091	9.61e-05	0.0358	CCCGCCCCGCCGCTCCT
SP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	26	42	+	2.49091	9.61e-05	0.0358	CCCGCCCCGCCGCTCCT
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.0.0	26	42	+	2.49091	9.61e-05	0.0358	CCCGCCCCGCCGCTCCT
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.1.0	26	42	+	2.49091	9.61e-05	0.0358	CCCGCCCCGCCGCTCCT
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	59	75	+	2.49091	9.61e-05	0.0358	CATGCCCCACCCTTATT
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.1.0	59	75	+	2.49091	9.61e-05	0.0358	CATGCCCCACCCTTATT
SP2	FLIPPED__Lincrna.flip.antisense__chr6:167412535..167412649,+__2415.1.0.0	4	18	+	9.60345	9.61e-05	0.0193	CCTCCTCCTCACCGC
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	22	36	-	9.60345	9.61e-05	0.0193	CCACCGCCCCGCGTC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	28	42	-	9.60345	9.61e-05	0.0193	CTCCCTCCTACAGCG
SP2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	43	57	+	9.60345	9.61e-05	0.0193	CTCCCTCCTACAGCG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:223914381..223914495,-__2034.1.0.0	32	46	-	9.60345	9.61e-05	0.0193	GATCTGCCCCCTCCC
SP2	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	58	72	-	9.60345	9.61e-05	0.0193	CTCCCTCCTACAGCG
SP2	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	73	87	+	9.60345	9.61e-05	0.0193	CTCCCTCCTACAGCG
SP2	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	83	97	+	9.60345	9.61e-05	0.0193	TCTCCACCTCCTCTT
SP2	WILDTYPE__Enhancer.noflip.NA__chr12:53268070..53268184,+__1942.1.0.0	95	109	+	9.60345	9.61e-05	0.0193	ACCCCACCTCTGGAG
SP2	WILDTYPE__Lincrna.flip.sense__chr6:167412535..167412649,-__738.1.0.0	97	111	-	9.60345	9.61e-05	0.0193	CCTCCTCCTCACCGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	10	23	-	4.4898	9.61e-05	0.0784	GGGGGCATCAGGAA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	10	23	-	4.4898	9.61e-05	0.0784	GGGGGCATCAGGAA
PLAG1	FLIPPED__mrna.flip.antisense__chr6:135818822..135818936,+__2518.1.0.0	15	28	-	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.0	87	100	+	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.2.0	87	100	+	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.1.0	87	100	+	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.0.0	87	100	+	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:135818822..135818936,-__1211.1.3.1	87	100	+	4.4898	9.61e-05	0.0784	GGGTCGCTGGCGGG
RARA	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	71	88	-	-11.3182	9.61e-05	1	GAGAGCAACAGGTTAAGC
SREBF2	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	18	27	+	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	93	102	+	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	13	22	-	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	13	22	-	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	13	22	-	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	13	22	-	10.4157	9.61e-05	0.883	GTCGCGTGAC
SREBF2	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	88	97	-	10.4157	9.61e-05	0.883	GTCGCGTGAC
SP8	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	24	35	-	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:43915994..43916108,+__127.1.2.0	28	39	-	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	32	43	-	10.2237	9.61e-05	0.0397	CCACCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	21	32	+	10.2237	9.61e-05	0.0397	CCACCCCCCCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	21	32	+	10.2237	9.61e-05	0.0397	CCACCCCCCCCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	26	37	+	10.2237	9.61e-05	0.0397	CCACCCCCCCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	28	39	+	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	28	39	+	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	28	39	+	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	28	39	+	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	72	83	+	10.2237	9.61e-05	0.0397	CCACCCCCCCCC
SP8	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	80	91	+	10.2237	9.61e-05	0.0397	ACCCCCCCCGCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.0.0	95	106	+	10.2237	9.61e-05	0.0397	GCCACCTCCCCT
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:130792770..130792884,-__780.1.1.0	95	106	+	10.2237	9.61e-05	0.0397	GCCACCTCCCCT
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	9	19	-	9.12727	9.61e-05	0.0252	GCGGATGCGAG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:31620429..31620543,-__1664.1.1.0	24	34	+	9.12727	9.61e-05	0.0252	CAGCGCGCGCA
NRF1	FLIPPED__Lincrna.flip.antisense__chr1:211556065..211556179,-__2618.1.0.0	35	45	+	9.12727	9.61e-05	0.0252	CAGCGCGCGCA
NRF1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	70	80	-	9.12727	9.61e-05	0.0252	CAGCGCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.0.0	70	80	-	9.12727	9.61e-05	0.0252	CAGCGCGCGCA
HIC2	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	95	103	+	10.6909	9.61e-05	0.451	ATGCCAACT
HIC2	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	12	20	-	10.6909	9.61e-05	0.451	ATGCCAACT
HLF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	7	18	-	11.0508	9.61e-05	1	CGTGACGCAATC
HLF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	7	18	-	11.0508	9.61e-05	1	CGTGACGCAATC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	33	43	+	10.1803	9.61e-05	0.0794	CCGGAACTCAC
Gabpa	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	33	43	+	10.1803	9.61e-05	0.0794	CCGGAACTCAC
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	33	43	+	10.1803	9.61e-05	0.0794	CCGGAACTCAC
Gabpa	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	33	43	+	10.1803	9.61e-05	0.0794	CCGGAACTCAC
Stat6	WILDTYPE__Antisense.noflip.NA__chr13:45915647..45915761,+__268.1.0.0	89	103	+	10.0862	9.62e-05	0.867	CCTTTTCTGGGAACG
Stat4	WILDTYPE__Enhancer.noflip.NA__chr2:8628329..8628443,-__2080.1.0.0	80	93	+	10.5517	9.62e-05	0.376	TTGATGAGAAAAGG
TBR1	WILDTYPE__Antisense.noflip.NA__chr12:92539898..92540012,+__257.1.0.0	5	14	+	10.4681	9.62e-05	0.975	GCGTGTGAAA
NFIC::TLX1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	28	41	+	4.02041	9.62e-05	0.384	TGGCGCCAGGCCAC
NFIC::TLX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	28	41	+	4.02041	9.62e-05	0.384	TGGCGCCAGGCCAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	14	23	-	11.5962	9.62e-05	0.327	TCCACGTGAC
MAX	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	14	23	-	11.5962	9.62e-05	0.327	TCCACGTGAC
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	14	23	-	11.5962	9.62e-05	0.327	TCCACGTGAC
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	14	23	-	11.5962	9.62e-05	0.327	TCCACGTGAC
FOXA1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.0.0	27	41	+	10.6939	9.62e-05	1	ATCGTATTTACCCAA
FOXA1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	27	41	+	10.6939	9.62e-05	1	ATCGTATTTACCCAA
FOXA1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.0	27	41	+	10.6939	9.62e-05	1	ATCGTATTTACCCAA
FOXA1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.3.1	27	41	+	10.6939	9.62e-05	1	ATCGTATTTACCCAA
FOXA1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.2.0	27	41	+	10.6939	9.62e-05	1	ATCGTATTTACCCAA
RARA(var.2)	WILDTYPE__Lincrna.noflip.NA__chr22:27053142..27053256,+__514.1.0.0	3	19	-	2.01639	9.62e-05	0.563	AGGCCGCAGAGAGCTCA
GCM2	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	33	42	+	10.6393	9.62e-05	0.726	CACGCGGGTA
GCM2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	73	82	-	10.6393	9.62e-05	0.726	CACGCGGGTA
GCM2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	73	82	-	10.6393	9.62e-05	0.726	CACGCGGGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	13	22	+	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr20:47393658..47393772,+__1790.1.0.0	42	51	+	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr20:47393599..47393713,-__2083.1.0.0	5	14	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	55	64	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
ETV6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	70	79	-	10.6731	9.62e-05	0.129	GGGGGAAGTA
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	14	26	-	10.082	9.62e-05	0.359	CTGCCTCCCTCCC
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	51	63	-	10.082	9.62e-05	0.359	CTGCCTCCCTCCC
SMAD2::SMAD3::SMAD4	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	68	80	-	10.082	9.62e-05	0.359	AAGGCTGACACGT
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.1	9	21	+	10.082	9.62e-05	0.359	TGGTCTGTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.1.0	9	21	+	10.082	9.62e-05	0.359	TGGTCTGTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.2.0	9	21	+	10.082	9.62e-05	0.359	TGGTCTGTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24610717..24610831,-__1494.1.0.0	9	21	+	10.082	9.62e-05	0.359	TGGTCTGTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	35	47	+	10.082	9.62e-05	0.359	AAGGCTGACACGT
SMAD2::SMAD3::SMAD4	WILDTYPE__Antisense.noflip.NA__chr7:79083189..79083303,+__814.1.0.0	36	48	+	10.082	9.62e-05	0.359	CTGCCTCCCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	52	64	+	10.082	9.62e-05	0.359	CTGCCTCCCTCCC
Sox6	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	81	90	+	10.9286	9.62e-05	0.937	TCTTTGTCTG
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	19	28	-	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	19	28	-	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	19	28	-	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	19	28	-	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.0	19	28	+	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.1.1	19	28	+	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604021..35604135,-__2278.1.0.0	19	28	+	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.0.0	89	98	+	9.22414	9.62e-05	0.251	GACACGCGAT
Srebf1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30720242..30720356,-__2268.1.1.0	89	98	+	9.22414	9.62e-05	0.251	GACACGCGAT
MAFG	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	63	83	+	9.09184	9.62e-05	1	AATTCGCTGCTGCAGCCATAT
MAFG	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	32	52	-	9.09184	9.62e-05	1	AATTCGCTGCTGCAGCCATAT
TFAP2C	FLIPPED__Antisense.flip.antisense__chr3:14988964..14989078,+__2391.1.0.0	2	13	+	10.6531	9.62e-05	0.0876	AGCCCACGGGCC
TFAP2C	WILDTYPE__Lincrna.noflip.NA__chrX:73513330..73513444,-__949.1.0.0	90	101	-	10.6531	9.62e-05	0.0876	TGCCTCGAGCCG
TFAP2C	WILDTYPE__Antisense.flip.sense__chr3:14988964..14989078,-__552.1.0.0	102	113	-	10.6531	9.62e-05	0.0876	AGCCCACGGGCC
IRF9	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	49	63	+	-4.2	9.62e-05	0.734	GACAAAACAAAAACT
IRF9	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	54	68	+	-4.2	9.62e-05	0.734	GACAAAACAAAAACT
IRF9	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	47	61	-	-4.2	9.62e-05	0.734	GACAAAACAAAAACT
IRF9	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	52	66	-	-4.2	9.62e-05	0.734	GACAAAACAAAAACT
NFYA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	54	71	-	8.26829	9.62e-05	0.227	AAAATGCTTGTTGGCCAA
EWSR1-FLI1	WILDTYPE__mrna.flip.sense__chr2:209119760..209119874,-__1177.1.0.0	29	46	+	-16.1974	9.62e-05	0.0561	GGAGGGGACAAAGCCGGG
EWSR1-FLI1	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	73	90	+	-16.1974	9.62e-05	0.0561	GGCAGGAAGGAGGGCGCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	25	42	-	-16.1974	9.62e-05	0.0561	GGCAGGAAGGAGGGCGCT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	25	42	-	-16.1974	9.62e-05	0.0561	GGCAGGAAGGAGGGCGCT
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	25	42	-	-16.1974	9.62e-05	0.0561	GGCAGGAAGGAGGGCGCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	25	42	-	-16.1974	9.62e-05	0.0561	GGCAGGAAGGAGGGCGCT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	46	63	-	-16.1974	9.62e-05	0.0561	GGCGGGGCGGGAGGTGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	46	63	-	-16.1974	9.62e-05	0.0561	GGCGGGGCGGGAGGTGGG
EWSR1-FLI1	FLIPPED__mrna.flip.antisense__chr2:209119760..209119874,+__2496.1.0.0	69	86	-	-16.1974	9.62e-05	0.0561	GGAGGGGACAAAGCCGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	22	31	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	37	46	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	29	38	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr1:93811384..93811498,+__1142.1.0.0	41	50	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	34	43	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	50	59	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	42	51	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	42	51	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	52	61	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	52	61	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	52	61	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.0	55	64	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.0.0	55	64	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.2.1	55	64	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:12838101..12838215,+__1238.1.1.0	55	64	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.0.0	46	55	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.1	46	55	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.1.0	46	55	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:38444987..38445101,-__1592.1.2.0	46	55	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.0.0	58	67	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:101142755..101142869,+__1024.1.1.0	58	67	+	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.0.0	55	64	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:155531741..155531855,+__23.1.1.0	55	64	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	56	65	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	FLIPPED__mrna.flip.antisense__chr1:93811384..93811498,-__2770.1.0.0	65	74	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	69	78	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	69	78	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	69	78	-	10	9.62e-05	0.0303	AGGGAGGGGG
Klf4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	69	78	-	10	9.62e-05	0.0303	AGGGAGGGGG
HEY2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	40	49	-	10.3448	9.62e-05	0.234	AGCACGTGTG
HEY2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	40	49	-	10.3448	9.62e-05	0.234	AGCACGTGTG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	28	48	-	8.91837	9.62e-05	0.0238	CAGAGAGAGAGGAGGGGGAGG
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	51	71	-	8.91837	9.62e-05	0.0238	AGAGAGGCGGGTGGGGGAGGA
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	52	72	-	8.91837	9.62e-05	0.0238	GGAGGCCTGGTTAGGGGAAGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	52	72	-	8.91837	9.62e-05	0.0238	GGAGGCCTGGTTAGGGGAAGA
ZNF263	FLIPPED__Antisense.flip.antisense__chr3:37903224..37903338,+__2394.1.0.0	60	80	-	8.91837	9.62e-05	0.0238	AGAAGAAGGGCGGGCGGGTGG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr21:47013488..47013602,+__510.1.0.0	66	86	-	8.91837	9.62e-05	0.0238	AAATGAGGAAGAAGCAAAAGC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr15:88247051..88247165,-__337.1.0.0	66	86	-	8.91837	9.62e-05	0.0238	AAATGAGGAAGAAGCAAAAGC
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.1.0	66	86	-	8.91837	9.62e-05	0.0238	GGAGAGTGAGGGAGGAAGGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:17085693..17085807,-__1722.1.0.0	66	86	-	8.91837	9.62e-05	0.0238	GGAGAGTGAGGGAGGAAGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	77	97	-	8.91837	9.62e-05	0.0238	GGGTGTGTGGGAGGGAGTAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.0	2	22	+	8.91837	9.62e-05	0.0238	AGAGGAGGGCCTAGAGTAGAC
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:63449639..63449753,-__1502.1.2.1	2	22	+	8.91837	9.62e-05	0.0238	AGAGGAGGGCCTAGAGTAGAC
ZNF263	WILDTYPE__Antisense.flip.sense__chr3:37903224..37903338,-__576.1.0.0	35	55	+	8.91837	9.62e-05	0.0238	AGAAGAAGGGCGGGCGGGTGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	51	71	+	8.91837	9.62e-05	0.0238	GAAGGTGGGCCTGGAAGATAA
ZNF263	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	84	104	+	8.91837	9.62e-05	0.0238	GGAGGCCGAGGTGGGAGGATC
ZNF263	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.1	84	104	+	8.91837	9.62e-05	0.0238	GGAGGCCGAGGTGGGAGGATC
Rhox11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.0	66	82	+	10.6184	9.62e-05	1	CAGCTGCTGTATTCAGT
Rhox11	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr22:48027372..48027486,+__534.1.2.1	66	82	+	10.6184	9.62e-05	1	CAGCTGCTGTATTCAGT
POU3F3	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	13	25	+	10.27	9.62e-05	1	ATTATGCAAAGGA
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	57	66	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	57	66	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	57	66	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.0	67	76	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.3.1	67	76	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.1.0	67	76	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.0.0	67	76	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:29716780..29716894,-__744.1.2.0	67	76	+	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	72	81	-	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	72	81	-	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	72	81	-	10.8103	9.62e-05	0.12	ACAGGAAATT
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	72	81	-	10.8103	9.62e-05	0.12	ACAGGAAATT
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.1.0	85	94	+	10.2241	9.63e-05	0.156	AGCACCTGAG
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.1	99	109	-	10.2364	9.63e-05	0.0719	CGCCCTGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.1.0	99	109	-	10.2364	9.63e-05	0.0719	CGCCCTGGGCG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.0.0	99	109	-	10.2364	9.63e-05	0.0719	CGCCCTGGGCG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	99	109	-	10.2364	9.63e-05	0.0719	CGCCCTGGGCG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.0.0	7	16	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:27528316..27528430,+__175.1.1.0	7	16	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	16	25	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	18	27	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	23	32	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	FLIPPED__mrna.flip.antisense__chr11:27528279..27528393,+__2480.1.0.0	44	53	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.1.0	49	58	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.0	49	58	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.2.1	49	58	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247973..143248087,-__2105.1.0.0	49	58	+	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__Enhancer.noflip.NA__chr5:100113522..100113636,+__1805.1.0.0	16	25	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	30	39	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.1.0	62	71	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:27528279..27528393,-__1150.1.0.0	62	71	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	66	75	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	74	83	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	74	83	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	74	83	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	74	83	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	83	92	-	10.8269	9.63e-05	0.148	ACAGGAAATG
FEV	FLIPPED__Antisense.flip.antisense__chr11:27528316..27528430,-__2632.1.0.0	99	108	-	10.8269	9.63e-05	0.148	ACAGGAAATG
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	47	66	-	2.54128	9.63e-05	0.0765	CCCCCCCCCCTCCCCCGCAT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	53	72	-	2.54128	9.63e-05	0.0765	CCCCCCCCCCTCCCCCGCAT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	13	32	+	2.54128	9.63e-05	0.0765	CCCCCCCCCCTCCCCCGCAT
RREB1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	43	62	+	2.54128	9.63e-05	0.0765	CCCCCCCCCCTCCCCCGCAT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	49	68	+	2.54128	9.63e-05	0.0765	CCCCCCCCCCTCCCCCGCAT
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr22:50976805..50976919,+__1966.1.0.0	5	16	+	-1.23077	9.63e-05	0.932	TGCCAGCAGTCA
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	7	18	-	-1.23077	9.63e-05	0.932	TGCCAGCAGTCA
TGIF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.1.0	7	18	-	-1.23077	9.63e-05	0.932	TGCCAGCAGTCA
TGIF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.0.0	7	18	-	-1.23077	9.63e-05	0.932	TGCCAGCAGTCA
TGIF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	7	18	-	-1.23077	9.63e-05	0.932	TGCCAGCAGTCA
TGIF1	FLIPPED__Antisense.flip.antisense__chr21:46340905..46341019,-__2680.1.0.0	32	43	+	-1.23077	9.63e-05	0.932	TGACATGTCCCA
TGIF1	WILDTYPE__Antisense.flip.sense__chr21:46340905..46341019,+__508.1.0.0	72	83	-	-1.23077	9.63e-05	0.932	TGACATGTCCCA
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	38	50	+	8.93443	9.63e-05	0.0652	ACCCCTTCCGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	38	50	+	8.93443	9.63e-05	0.0652	ACCCCTTCCGGGA
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	38	50	+	8.93443	9.63e-05	0.0652	ACCCCTTCCGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	38	50	+	8.93443	9.63e-05	0.0652	ACCCCTTCCGGGA
TCF3	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	1	10	-	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	WILDTYPE__Enhancer.flip.sense__chr21:17568021..17568135,-__2086.1.0.0	21	30	-	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	WILDTYPE__Antisense.noflip.NA__chr2:64455507..64455621,+__442.1.0.0	36	45	+	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	WILDTYPE__Lincrna.noflip.NA__chr9:94903594..94903708,+__918.1.0.0	54	63	+	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	WILDTYPE__Antisense.noflip.NA__chr2:64455479..64455593,+__441.1.0.0	64	73	+	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	FLIPPED__Enhancer.flip.antisense__chr21:17568021..17568135,+__2550.1.0.0	85	94	+	11.4231	9.63e-05	0.404	AGCAGCTGCG
TCF3	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	105	114	+	11.4231	9.63e-05	0.404	AGCAGCTGCG
SPI1	WILDTYPE__Enhancer.noflip.NA__chr14:99736181..99736295,-__2159.1.0.0	42	55	-	1.49091	9.63e-05	0.276	AAAAAAAGGAACGG
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.0.0	42	54	-	7.13636	9.63e-05	0.265	AGGGACTCCACCC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:124907771..124907885,+__1854.1.1.0	42	54	-	7.13636	9.63e-05	0.265	AGGGACTCCACCC
RELA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.1.0	97	106	-	8.45918	9.63e-05	0.279	TGGAGATCCC
RELA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:149375223..149375337,-__1071.1.0.0	97	106	-	8.45918	9.63e-05	0.279	TGGAGATCCC
NR1H2::RXRA	WILDTYPE__Enhancer.flip.sense__chr21:17568001..17568115,+__1793.1.0.0	20	36	-	-6.79775	9.63e-05	1	CAGGGTGAAAGCACATG
NR1H2::RXRA	FLIPPED__Enhancer.flip.antisense__chr21:17568001..17568115,-__2834.1.0.0	79	95	+	-6.79775	9.63e-05	1	CAGGGTGAAAGCACATG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr8:86851854..86851968,+__873.1.0.0	64	74	-	10.4694	9.63e-05	0.352	GTGCAGGGAAA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	91	105	-	10.2883	9.63e-05	0.19	CACGGGCAGAGGCGA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	91	105	-	10.2883	9.63e-05	0.19	CACGGGCAGAGGCGA
REST	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	5	25	+	4.13265	9.63e-05	0.252	GCCGGCACTTCGGAGGGAGGA
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:155658069..155658183,-__1418.1.0.0	85	100	-	-11.3077	9.63e-05	0.33	TTTCCCCTCGCAAAGC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	92	107	-	-11.3077	9.63e-05	0.33	ATTGCGCCCGCGTCGC
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr19:752723..752837,+__1781.1.0.0	84	95	-	10.63	9.63e-05	1	TGTTTGCCCAGT
Foxa2	WILDTYPE__Enhancer.noflip.NA__chr19:752716..752830,-__2074.1.0.0	13	24	+	10.63	9.63e-05	1	TGTTTGCCCAGT
EBF1	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	18	31	+	8.19672	9.63e-05	0.372	ATTCCCTGGGGCGG
EBF1	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	84	97	-	8.19672	9.63e-05	0.372	ATTCCCTGGGGCGG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:113800715..113800829,-__1704.1.0.0	33	46	+	5.23404	9.63e-05	0.106	GCCCTCCCTCTGCG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr11:122073736..122073850,-__161.1.0.0	28	41	-	5.23404	9.63e-05	0.106	GGCTCCCCCTTGTG
ZIC1	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	86	99	-	5.23404	9.63e-05	0.106	GACCCCCTAGGGCC
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.0.0	95	105	+	10.8909	9.63e-05	0.736	CGGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.0	95	105	+	10.8909	9.63e-05	0.736	CGGCACTCAGA
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr21:17566701..17566815,+__495.1.1.1	95	105	+	10.8909	9.63e-05	0.736	CGGCACTCAGA
HES7	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705526..131705640,-__658.1.3.0	46	57	-	2.05172	9.63e-05	0.224	CGGCAGGTGCCC
ZIC4	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	6	20	-	9.65455	9.63e-05	0.114	TCCGCCCCATTGGGA
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	7	21	-	9.65455	9.63e-05	0.114	CGCCCCCCGCTCCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.3.1	34	48	-	9.65455	9.63e-05	0.114	CCCACCCCGCTGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:49913033..49913147,-__1500.1.2.0	34	48	-	9.65455	9.63e-05	0.114	CCCACCCCGCTGTCG
ZIC4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	34	48	-	9.65455	9.63e-05	0.114	TGCCACCCACCGCCT
ZIC4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	34	48	-	9.65455	9.63e-05	0.114	TGCCACCCACCGCCT
ZIC4	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	94	108	-	9.65455	9.63e-05	0.114	CGCCTCCCGCAACGC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	96	110	-	9.65455	9.63e-05	0.114	CGCCTCCCGCAACGC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	5	19	+	9.65455	9.63e-05	0.114	CGCCTCCCGCAACGC
ZIC4	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	7	21	+	9.65455	9.63e-05	0.114	CGCCTCCCGCAACGC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.3.1	23	37	+	9.65455	9.63e-05	0.114	CCCACCCCGCTGTCG
ZIC4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:49913077..49913191,+__1501.1.2.0	23	37	+	9.65455	9.63e-05	0.114	CCCACCCCGCTGTCG
ZIC4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	30	44	+	9.65455	9.63e-05	0.114	CGCACCCCGTGGCCA
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	36	50	+	9.65455	9.63e-05	0.114	CGCCCCCCGCTCCGG
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	57	71	+	9.65455	9.63e-05	0.114	GCCCCCCAGTGGCTC
ZIC4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	57	71	+	9.65455	9.63e-05	0.114	GCCCCCCAGTGGCTC
ZIC4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	57	71	+	9.65455	9.63e-05	0.114	GCCCCCCAGTGGCTC
ZIC4	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	67	81	+	9.65455	9.63e-05	0.114	TGCCACCCACCGCCT
KLF16	WILDTYPE__mrna.noflip.NA__chr11:57004689..57004803,-__1363.1.0.0	4	14	-	9.81034	9.64e-05	0.0269	GACCAGCCCCT
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:68922875..68922989,-__2050.1.0.0	18	28	+	9.81034	9.64e-05	0.0269	ACCACACCCCA
KLF16	WILDTYPE__Enhancer.flip.sense__chr11:68922919..68923033,+__1757.1.0.0	43	53	-	9.81034	9.64e-05	0.0269	ACCACACCCCA
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:68922919..68923033,-__2827.1.0.0	62	72	+	9.81034	9.64e-05	0.0269	ACCACACCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:76139852..76139966,+__1259.1.0.0	81	91	+	9.81034	9.64e-05	0.0269	GACCAGCCCCT
KLF16	FLIPPED__Enhancer.flip.antisense__chr11:68922875..68922989,+__2543.1.0.0	87	97	-	9.81034	9.64e-05	0.0269	ACCACACCCCA
KLF16	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	99	109	-	9.81034	9.64e-05	0.0269	ACCACACCCCA
SP1	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	36	46	-	10.0192	9.64e-05	0.0217	CGCCCACCCTC
SP1	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	36	46	-	10.0192	9.64e-05	0.0217	CGCCCACCCTC
SP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	46	56	-	10.0192	9.64e-05	0.0217	CGCCCACCCTC
SP1	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	70	80	+	10.0192	9.64e-05	0.0217	CGCCCACCCTC
FOXC2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	52	63	+	10.8515	9.64e-05	1	AAAACCAACAAA
MNT	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	+	11.6818	9.64e-05	0.362	TCCACGTGTT
MNT	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	+	11.6818	9.64e-05	0.362	TCCACGTGTT
MNT	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	-	11.6818	9.64e-05	0.362	TCCACGTGTT
EGR2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.0.0	2	12	+	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:19738227..19738341,+__459.1.1.0	2	12	+	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	21	31	-	8.72414	9.64e-05	0.0878	CCGCCCACATG
EGR2	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	36	46	+	8.72414	9.64e-05	0.0878	CTGCCCACGGA
EGR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	37	47	-	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	37	47	-	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	37	47	-	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	37	47	-	8.72414	9.64e-05	0.0878	CCGCCCACATG
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	37	47	-	8.72414	9.64e-05	0.0878	CCGCCCAGGCG
EGR2	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	68	78	+	8.72414	9.64e-05	0.0878	CCGCCCACATG
EGR2	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	69	79	-	8.72414	9.64e-05	0.0878	CTGCCCACGGA
EGR2	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	84	94	+	8.72414	9.64e-05	0.0878	CCGCCCACATG
EGR2	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	93	103	+	8.72414	9.64e-05	0.0878	ACGTCCACGTG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr16:2014792..2014906,-__1167.1.2.1	1	11	-	9.89655	9.64e-05	0.0527	AAGCGGGAGCA
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.1	28	38	+	9.89655	9.64e-05	0.0527	AAGCGGGAGCA
E2F4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.1.0	28	38	+	9.89655	9.64e-05	0.0527	AAGCGGGAGCA
HNF4G	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:177159673..177159787,+__566.1.0.0	8	22	+	10.0962	9.64e-05	0.388	GAAGGCCAAAGTGGA
Rxra	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	100	113	+	1.84146	9.64e-05	0.529	GGGGCGAAAGGACA
Rxra	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	100	113	+	1.84146	9.64e-05	0.529	GGGGCGAAAGGACA
ESR2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.0.0	30	44	-	10.0769	9.64e-05	0.498	GGGTCAGTGAGTCAA
ESR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:33744186..33744300,-__1318.1.1.0	30	44	-	10.0769	9.64e-05	0.498	GGGTCAGTGAGTCAA
STAT1	WILDTYPE__mrna.noflip.NA__chr16:20911645..20911759,-__1244.1.0.0	8	18	-	9.6	9.64e-05	0.432	CTTCCGGTAAC
E2F8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	66	77	-	2.90244	9.64e-05	0.631	CTTCTGCCCAAA
E2F8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	66	77	-	2.90244	9.64e-05	0.631	CTTCTGCCCAAA
TFEB	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	30	39	-	10.8269	9.64e-05	0.219	CTCACATGCC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	58	70	+	10.8367	9.64e-05	0.202	GTCAGCTGCGCGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	58	70	+	10.8367	9.64e-05	0.202	GTCAGCTGCGCGC
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	14	23	-	10.3469	9.64e-05	0.0296	TTCACGCCCC
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	92	101	+	10.3469	9.64e-05	0.0296	TTCACGCCCC
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.0.0	15	24	-	11.0366	9.64e-05	0.199	CCCACGTGAG
TFEC	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	15	24	-	11.0366	9.64e-05	0.199	CCCACGTGAG
TFEC	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	45	54	+	11.0366	9.64e-05	0.199	CCCACGTGAG
TFEC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	95	104	-	11.0366	9.64e-05	0.199	CCCACGTGAG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	83	95	+	9.39344	9.64e-05	0.0589	CGCCCTCGCGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	83	95	+	9.39344	9.64e-05	0.0589	CGCCCTCGCGGGC
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	91	103	+	9.39344	9.64e-05	0.0589	TCCCCCGCCGGGG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	20	32	-	9.39344	9.64e-05	0.0589	CGCCCTCGCGGGC
ZBTB7A	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.0	25	36	-	10.2143	9.64e-05	0.237	AGCGTCCACAGC
ZBTB7A	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr22:50976713..50976827,-__2259.1.2.1	25	36	-	10.2143	9.64e-05	0.237	AGCGTCCACAGC
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.0.0	26	37	+	10.2143	9.64e-05	0.237	GCCGCCCACGGG
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:143695803..143695917,-__1686.1.1.0	26	37	+	10.2143	9.64e-05	0.237	GCCGCCCACGGG
HNF1B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	2	14	-	9.31818	9.65e-05	1	ATTAATTATTCAT
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	2	14	-	9.31818	9.65e-05	1	ATTAATTATTCAT
HNF1B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	2	14	-	9.31818	9.65e-05	1	ATTAATTATTCAT
HNF1B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	2	14	-	9.31818	9.65e-05	1	ATTAATTATTCAT
Rarg	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	14	29	+	-3.81633	9.65e-05	0.877	GCGGCCGTGAGGTCAT
Rarg	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	14	29	+	-3.81633	9.65e-05	0.877	GCGGCCGTGAGGTCAT
Rarg	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	86	101	-	-3.81633	9.65e-05	0.877	GCGGCCGTGAGGTCAT
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr11:9781045..9781159,-__204.1.0.0	15	27	-	8.81429	9.65e-05	0.769	GGGACAGATGCTG
JUN(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.0.0	1	14	-	10.3846	9.65e-05	0.252	CATGGATGAGTAAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	1	14	-	10.3846	9.65e-05	0.252	CATGGATGAGTAAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.1.0	1	14	-	10.3846	9.65e-05	0.252	CATGGATGAGTAAT
JUN(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	1	14	-	10.3846	9.65e-05	0.252	CATGGATGAGTAAT
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	46	64	+	7.85246	9.65e-05	0.136	CCGCCAGCACGTGGCGGCG
CTCF	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	46	64	+	7.85246	9.65e-05	0.136	CCGCCAGCACGTGGCGGCG
CTCF	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	47	65	+	7.85246	9.65e-05	0.136	CGGCCAATGGGTAGCGCCT
CTCF	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	31	49	-	7.85246	9.65e-05	0.136	CAGGCTAAAGGGGGCGGGG
CTCF	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	51	69	-	7.85246	9.65e-05	0.136	CCGCCAGCACGTGGCGGCG
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.1.0	85	98	-	7.63636	9.65e-05	0.365	GTGCCACGGACGCA
CREB3L1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.1	85	98	-	7.63636	9.65e-05	0.365	GTGCCACGGACGCA
CREB3L1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.0.0	85	98	-	7.63636	9.65e-05	0.365	GTGCCACGGACGCA
CREB3L1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:180618810..180618924,+__679.1.2.0	85	98	-	7.63636	9.65e-05	0.365	GTGCCACGGACGCA
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	45	58	+	7.21311	9.65e-05	0.189	GCCACCCCGTGGCG
JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	44	56	+	9.26531	9.65e-05	0.358	ATTCTGATGTAAC
JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	44	56	+	9.26531	9.65e-05	0.358	ATTCTGATGTAAC
ZNF143	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	10	25	+	-0.0689655	9.65e-05	0.475	TTCCCGGCATTCCCTG
ZNF143	WILDTYPE__mrna.noflip.NA__chr13:73632820..73632934,+__1015.1.0.0	26	41	+	-0.0689655	9.65e-05	0.475	TTCCCAGATTCCACCC
ZNF143	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	90	105	-	-0.0689655	9.65e-05	0.475	TTCCCGGCATTCCCTG
EGR3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	3	17	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	6	20	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__mrna.flip.antisense__chr14:56046880..56046994,-__2779.1.0.0	9	23	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	2	16	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	5	19	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	8	22	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	10	24	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	10	24	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	11	25	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.1.0	13	27	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	13	27	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	14	28	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	17	31	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	28	42	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	49	63	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	52	66	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	40	54	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	55	69	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	43	57	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	58	72	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	58	72	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	58	72	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	61	75	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	61	75	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	61	75	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.1.0	50	64	-	5.24138	9.65e-05	0.0418	CGCCCCCCCGGCACG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:50017127..50017241,+__1405.1.0.0	50	64	-	5.24138	9.65e-05	0.0418	CGCCCCCCCGGCACG
EGR3	WILDTYPE__mrna.noflip.NA__chr1:208417614..208417728,-__964.1.0.0	64	78	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	54	68	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	54	68	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	54	68	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	54	68	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	57	71	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	57	71	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	57	71	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	57	71	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	73	87	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	59	73	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	59	73	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	69	83	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	69	83	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	84	98	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	72	86	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	72	86	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	72	86	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	87	101	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	88	102	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	75	89	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	90	104	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr11:46848369..46848483,-__985.1.0.0	91	105	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	91	105	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	78	92	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	93	107	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.noflip.NA__chr22:38713333..38713447,-__1068.1.0.0	81	95	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	96	110	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	99	113	+	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	92	106	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	95	109	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr14:56046880..56046994,+__1161.1.0.0	98	112	-	5.24138	9.65e-05	0.0418	CGCCGCCGCCGCCGC
ELF5	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	69	79	-	10.9273	9.65e-05	0.161	AAGAGGAAGCG
ELF5	WILDTYPE__mrna.noflip.NA__chr11:61976065..61976179,+__986.1.0.0	85	95	-	10.9273	9.65e-05	0.161	TCAAGGAAGTT
Zfx	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	63	76	+	9.90909	9.65e-05	0.0691	AGGGCACCGGCCTC
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	84	97	-	9.90909	9.65e-05	0.0691	GCGCCCTGAGCCTG
Esrrg	FLIPPED__Enhancer.flip.antisense__chr16:11734182..11734296,+__2574.1.0.0	17	26	+	10.3878	9.65e-05	1	CCGAGGTCAC
Esrrg	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.0.0	89	98	-	10.3878	9.65e-05	1	CCGAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:11734182..11734296,-__2163.1.1.0	89	98	-	10.3878	9.65e-05	1	CCGAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	102	111	-	10.3878	9.65e-05	1	TGGAGGTCAC
Esrrg	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	102	111	-	10.3878	9.65e-05	1	TGGAGGTCAC
Esrrg	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	102	111	-	10.3878	9.65e-05	1	TGGAGGTCAC
Esrrg	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	102	111	-	10.3878	9.65e-05	1	TGGAGGTCAC
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	25	44	-	2.53211	9.65e-05	0.0765	GCCCCCCCCCCCCGCCAAGT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	58	77	+	2.53211	9.65e-05	0.0765	GCTCCCCTCACCCGCCCCCT
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	58	77	+	2.53211	9.65e-05	0.0765	GCTCCCCTCACCCGCCCCCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	58	77	+	2.53211	9.65e-05	0.0765	GCTCCCCTCACCCGCCCCCT
SP4	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	2	18	+	2.47273	9.65e-05	0.0359	GAGGCCTCGCCCCTCCG
SP4	WILDTYPE__Antisense.noflip.NA__chr13:45915618..45915732,+__267.1.0.0	12	28	+	2.47273	9.65e-05	0.0359	CCGGCTCCGCCCTACCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	60	76	-	2.47273	9.65e-05	0.0359	GAGGCCTCGCCCCTCCG
SP4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	60	76	-	2.47273	9.65e-05	0.0359	GAGGCCTCGCCCCTCCG
FOXC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:101454532..101454646,-__1450.1.1.0	44	54	-	10.88	9.65e-05	1	TAAGTCAACAG
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr14:24439087..24439201,+__1017.1.0.0	45	57	+	8.7931	9.65e-05	0.0581	GGCCCGGTGGGGG
RFX2	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	45	60	-	4.87143	9.65e-05	0.49	CGTTGCCAGGATACCG
RFX2	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	53	68	+	4.87143	9.65e-05	0.49	CGTTGCCAGGATACCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.1.0	7	18	+	10.6909	9.65e-05	0.0581	AGCCCCTGGGCC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:66556179..66556293,+__1951.1.0.0	7	18	+	10.6909	9.65e-05	0.0581	AGCCCCTGGGCC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr12:70574047..70574161,+__250.1.0.0	10	21	-	10.6909	9.65e-05	0.0581	GGCCCTCAGCCA
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	28	39	-	10.6909	9.65e-05	0.0581	GCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	64	75	+	10.6909	9.65e-05	0.0581	GCCCCCGGGGCC
TFAP2A(var.2)	WILDTYPE__Enhancer.noflip.NA__chr10:129862576..129862690,-__2038.1.0.0	103	114	+	10.6909	9.65e-05	0.0581	CCCCCCAGAGCA
TBX21	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	1	10	+	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	17	26	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	17	26	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	17	26	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.0.0	33	42	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.1	33	42	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.1.0	33	42	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:76311664..76311778,+__1672.1.2.0	33	42	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	71	80	-	10.1455	9.66e-05	1	CAGGCGTGAA
TBX21	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	105	114	-	10.1455	9.66e-05	1	CAGGCGTGAA
IRF9	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	43	57	-	-4.21818	9.66e-05	0.734	AAAGAAAGCAAATCT
VAX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	+	9.79592	9.66e-05	1	CTAATTAG
VAX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	9	16	-	9.79592	9.66e-05	1	CTAATTAG
VAX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	+	9.79592	9.66e-05	1	CTAATTAG
VAX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	94	101	-	9.79592	9.66e-05	1	CTAATTAG
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	47	54	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	51	58	-	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	51	58	-	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	51	58	-	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	51	58	-	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	74	81	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	74	81	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	96	103	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	96	103	+	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	100	107	-	9.84	9.66e-05	1	CTCATTAA
NKX6-2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	100	107	-	9.84	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.0.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.1	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.2.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:158527441..158527555,+__668.1.1.0	47	54	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	51	58	-	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	51	58	-	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	51	58	-	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	51	58	-	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	74	81	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	74	81	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	96	103	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	96	103	+	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.0.0	100	107	-	10.8814	9.66e-05	1	CTCATTAA
NKX6-1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169005..2169119,+__1776.1.1.0	100	107	-	10.8814	9.66e-05	1	CTCATTAA
LBX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	78	85	-	11.2222	9.66e-05	1	GTAATTAG
LBX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	78	85	-	11.2222	9.66e-05	1	GTAATTAG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	8	14	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	8	14	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	FLIPPED__Enhancer.flip.antisense__chr16:85202704..85202818,-__2861.1.0.0	28	34	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	57	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	57	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	81	87	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	85	91	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	85	91	+	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	4	10	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	4	10	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	9	15	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	9	15	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE__Antisense.noflip.NA__chr15:59980629..59980743,+__325.1.0.0	9	15	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	24	30	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	58	64	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	58	64	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.0.0	81	87	-	9.9802	9.66e-05	1	TTAATTG
Nkx2-5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr16:85202704..85202818,+__1874.1.1.0	81	87	-	9.9802	9.66e-05	1	TTAATTG
Gmeb1	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	3	19	+	10.4605	9.66e-05	0.668	CAGGGTGCGCACGGGTG
Gmeb1	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	18	34	+	10.4605	9.66e-05	0.668	GGCGGGGCGTCCCAGGC
Gmeb1	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	71	87	+	10.4605	9.66e-05	0.668	CAGGGTGCGCACGGGTG
Gmeb1	WILDTYPE__Enhancer.noflip.NA__chr5:133801503..133801617,-__2201.1.0.0	23	39	-	10.4605	9.66e-05	0.668	GGCGGGGCGTCCCAGGC
Gmeb1	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	28	44	-	10.4605	9.66e-05	0.668	CAGGGTGCGCACGGGTG
Gmeb1	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	96	112	-	10.4605	9.66e-05	0.668	CAGGGTGCGCACGGGTG
Myc	WILDTYPE__Antisense.noflip.NA__chr1:68297906..68298020,+__87.1.0.0	20	29	+	11.1273	9.66e-05	0.561	ACACGTGGGC
Myc	WILDTYPE__Lincrna.noflip.NA__chr10:6625539..6625653,+__136.1.0.0	21	30	+	11.1273	9.66e-05	0.561	ACACGTGGGC
HES5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	87	98	+	1.10345	9.66e-05	0.298	CGCCCCGTGCCG
HES5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	87	98	+	1.10345	9.66e-05	0.298	CGCCCCGTGCCG
HES5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	87	98	+	1.10345	9.66e-05	0.298	CGCCCCGTGCCG
Klf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.1.0	15	29	-	7.27869	9.66e-05	0.0733	TGCCGCGCCCCCAAC
Klf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:128180784..128180898,+__1052.1.0.0	15	29	-	7.27869	9.66e-05	0.0733	TGCCGCGCCCCCAAC
Klf12	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	68	82	-	7.27869	9.66e-05	0.0733	AACCAAGCCCCGCCC
Klf12	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	68	82	-	7.27869	9.66e-05	0.0733	AACCAAGCCCCGCCC
KLF14	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	5	18	+	7.82759	9.66e-05	0.0416	CTCCCCGCCCCCAG
KLF14	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	30	43	+	7.82759	9.66e-05	0.0416	AGCCACACCTCCAC
KLF14	WILDTYPE__mrna.noflip.NA__chr16:67840396..67840510,-__1032.1.0.0	33	46	+	7.82759	9.66e-05	0.0416	CTCCCCGCCCCCAG
KLF14	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	32	45	-	7.82759	9.66e-05	0.0416	GGCTCCTCCCCTTT
KLF14	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	52	65	+	7.82759	9.66e-05	0.0416	CTCCGCGCCCCCAC
KLF14	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	50	63	-	7.82759	9.66e-05	0.0416	CTCCGCGCCCCCAC
KLF14	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	70	83	+	7.82759	9.66e-05	0.0416	GGCTCCTCCCCTTT
KLF14	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	72	85	-	7.82759	9.66e-05	0.0416	AGCCACACCTCCAC
KLF14	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	97	110	-	7.82759	9.66e-05	0.0416	CTCCCCGCCCCCAG
LEF1	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	74	88	+	7.74194	9.66e-05	1	AAGAATCAAAGGAAG
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr4:100871614..100871728,+__600.1.0.0	9	26	+	-16.2105	9.66e-05	0.0563	GGGAGAGGCGGGGGAAGG
EWSR1-FLI1	WILDTYPE__Lincrna.noflip.NA__chr2:86116324..86116438,+__449.1.0.0	80	97	+	-16.2105	9.66e-05	0.0563	GGAAGGAAACAAAGCTTA
SP3	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	60	70	+	10.5122	9.66e-05	0.0287	GCCACCCCTAC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.1	19	30	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.1.0	19	30	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.2.0	19	30	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:73972891..73973005,+__757.1.0.0	19	30	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE__mrna.flip.sense__chr2:217363487..217363601,+__1178.1.0.0	31	42	+	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.1.0	26	37	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.0.0	26	37	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.1	26	37	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:217363440..217363554,-__422.1.2.0	26	37	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	54	65	+	9.9697	9.66e-05	0.111	GCGCGTGCGCGA
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	54	65	+	9.9697	9.66e-05	0.111	GCGCGTGCGCGA
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	49	60	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	49	60	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	FLIPPED__Antisense.flip.antisense__chr2:217363440..217363554,+__2380.1.0.0	78	89	+	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	FLIPPED__mrna.flip.antisense__chr2:217363487..217363601,-__2786.1.0.0	73	84	-	9.9697	9.66e-05	0.111	CCACTTCCGCTC
HINFP	FLIPPED__Antisense.flip.antisense__chr6:73972891..73973005,-__2716.1.0.0	85	96	+	9.9697	9.66e-05	0.111	CCACTTCCGCTC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	82	96	-	9.51515	9.66e-05	0.132	AGCCCGCGAGGGCGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	82	96	-	9.51515	9.66e-05	0.132	AGCCCGCGAGGGCGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	19	33	+	9.51515	9.66e-05	0.132	AGCCCGCGAGGGCGC
Npas2	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	+	11	9.66e-05	0.348	AACACGTGGA
Npas2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	-	11	9.66e-05	0.348	AACACGTGGA
Npas2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	-	11	9.66e-05	0.348	AACACGTGGA
NFKB1	WILDTYPE__Antisense.noflip.NA__chr20:35201756..35201870,-__472.1.0.0	1	13	+	0.755102	9.66e-05	0.272	AGGGGCTTCGCCC
ZIC3	FLIPPED__Lincrna.flip.antisense__chr1:231664267..231664381,+__2327.1.0.0	8	22	-	7.15714	9.66e-05	0.129	CGCCCTCTGCTGCGC
ZIC3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.0.0	93	107	+	7.15714	9.66e-05	0.129	CGCCCTCTGCTGCGC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:231664267..231664381,-__56.1.1.0	93	107	+	7.15714	9.66e-05	0.129	CGCCCTCTGCTGCGC
NR2C2	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	4	18	-	8.51429	9.66e-05	0.122	CGGGAGCTGAGGGCA
NR2C2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	15	29	-	8.51429	9.66e-05	0.122	CGAGGTGGGGGGCGG
NR2C2	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	76	90	-	8.51429	9.66e-05	0.122	TGGGGGAGGAGGCCA
NR2C2	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	84	98	-	8.51429	9.66e-05	0.122	TGGGGGAGGAGGCCA
NR2C2	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	17	31	+	8.51429	9.66e-05	0.122	TGGGGGAGGAGGCCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	24	38	+	8.51429	9.66e-05	0.122	GCGGGGCTGGGGGCG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	24	38	+	8.51429	9.66e-05	0.122	GCGGGGCTGGGGGCG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	24	38	+	8.51429	9.66e-05	0.122	GCGGGGCTGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	24	38	+	8.51429	9.66e-05	0.122	GCGGGGCTGGGGGCG
NR2C2	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	25	39	+	8.51429	9.66e-05	0.122	TGGGGGAGGAGGCCA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	97	111	+	8.51429	9.66e-05	0.122	CGGGAGCTGAGGGCA
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	97	111	+	8.51429	9.66e-05	0.122	CGGGAGCTGAGGGCA
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	97	111	+	8.51429	9.66e-05	0.122	CGGGAGCTGAGGGCA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	97	111	+	8.51429	9.66e-05	0.122	CGGGAGCTGAGGGCA
IRF8	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	69	82	-	-4.29091	9.66e-05	0.79	CCTAAAGAGAAAGC
IRF8	WILDTYPE__Antisense.noflip.NA__chr20:32580865..32580979,-__469.1.0.0	80	93	-	-4.29091	9.66e-05	0.79	TTAAAAGCGAAAGG
PLAG1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.0.0	19	32	+	4.46939	9.66e-05	0.0785	GGGAGTGAAGGGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.1.0	81	93	+	8.91803	9.67e-05	0.0652	AGCCGTGCAGGCT
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:11159873..11159987,-__1414.1.0.0	81	93	+	8.91803	9.67e-05	0.0652	AGCCGTGCAGGCT
Foxj3	WILDTYPE__Lincrna.noflip.NA__chr8:112039616..112039730,-__827.1.0.0	46	62	-	10.5974	9.67e-05	1	GGGGAATAAATAAAGAT
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	45	54	-	10.6869	9.67e-05	1	GTTTTCCATA
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	45	54	-	10.6869	9.67e-05	1	GTTTTCCATA
NFATC3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	45	54	-	10.6869	9.67e-05	1	GTTTTCCATA
NFATC3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	45	54	-	10.6869	9.67e-05	1	GTTTTCCATA
NFATC3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	45	54	-	10.6869	9.67e-05	1	GTTTTCCATA
POU3F3	WILDTYPE__Enhancer.noflip.NA__chr11:109958831..109958945,+__2003.1.0.0	11	23	-	10.26	9.67e-05	1	AATATGCTAGTGT
RUNX2	WILDTYPE__Antisense.noflip.NA__chr15:63892916..63893030,-__327.1.0.0	1	9	-	11.0577	9.67e-05	0.585	CAACCGCAC
RUNX2	FLIPPED__Enhancer.flip.antisense__chr17:72978378..72978492,+__2546.1.0.0	24	32	-	11.0577	9.67e-05	0.585	CAACCGCAC
RUNX2	WILDTYPE__Enhancer.flip.sense__chr17:72978376..72978490,+__1773.1.0.0	26	34	-	11.0577	9.67e-05	0.585	CAACCGCAC
RUNX2	FLIPPED__Enhancer.flip.antisense__chr17:72978376..72978490,-__2830.1.0.0	81	89	+	11.0577	9.67e-05	0.585	CAACCGCAC
RUNX2	WILDTYPE__Enhancer.flip.sense__chr17:72978378..72978492,-__2066.1.0.0	83	91	+	11.0577	9.67e-05	0.585	CAACCGCAC
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.1.0	84	102	+	9.87097	9.67e-05	0.158	TGCACCAGCGAGCCGGGGC
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:103422436..103422550,+__1631.1.0.0	84	102	+	9.87097	9.67e-05	0.158	TGCACCAGCGAGCCGGGGC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	81	93	+	7.25862	9.67e-05	0.196	GAGCCGGATGTTT
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	81	93	+	7.25862	9.67e-05	0.196	GAGCCGGATGTTT
E2F1	WILDTYPE__Enhancer.noflip.NA__chr4:95373937..95374051,+__1906.1.0.0	71	82	-	10.3115	9.67e-05	0.458	ATTCGCGCCTAG
EGR4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.0.0	13	28	+	9.58182	9.67e-05	0.0418	CCCCGCCCCGCCGCTC
EGR4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:31191505..31191619,+__65.1.1.0	13	28	+	9.58182	9.67e-05	0.0418	CCCCGCCCCGCCGCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.1.0	5	20	-	9.58182	9.67e-05	0.0418	CCCCCCCCCCCCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:20946342..20946456,-__1518.1.0.0	5	20	-	9.58182	9.67e-05	0.0418	CCCCCCCCCCCCCTCC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	49	64	+	9.58182	9.67e-05	0.0418	CGCCGCGCACGCCTGG
EGR4	WILDTYPE__Antisense.noflip.NA__chr5:92916971..92917085,-__719.1.0.0	53	68	-	9.58182	9.67e-05	0.0418	CTCCGCGCCCGCCTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	63	78	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	63	78	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	63	78	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	63	78	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.0.0	87	102	-	9.58182	9.67e-05	0.0418	CTCCGCCTCCGCGTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.1.0	87	102	-	9.58182	9.67e-05	0.0418	CTCCGCCTCCGCGTGA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.1	87	102	-	9.58182	9.67e-05	0.0418	CTCCGCCTCCGCGTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:94982403..94982517,+__1647.1.2.0	87	102	-	9.58182	9.67e-05	0.0418	CTCCGCCTCCGCGTGA
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.0	98	113	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.0.0	98	113	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.2.1	98	113	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274174..8274288,+__1543.1.1.0	98	113	-	9.58182	9.67e-05	0.0418	CGCCGCCCGCCCCAGG
TFAP2C	WILDTYPE__Lincrna.flip.sense__chrX:56755618..56755732,+__939.1.0.0	81	92	+	10.6429	9.67e-05	0.0876	TGCCTGGAGGGG
TFAP2C	FLIPPED__Lincrna.flip.antisense__chrX:56755618..56755732,-__2735.1.0.0	23	34	-	10.6429	9.67e-05	0.0876	TGCCTGGAGGGG
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	27	38	-	10.6429	9.67e-05	0.0876	CGCCCTCGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	27	38	-	10.6429	9.67e-05	0.0876	CGCCCTCGGGGC
TFAP2C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	27	38	-	10.6429	9.67e-05	0.0876	CGCCCTCGGGGC
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	27	38	-	10.6429	9.67e-05	0.0876	CGCCCTCGGGGC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	27	38	-	10.6429	9.67e-05	0.0876	CGCCCTCGGGGC
SREBF2(var.2)	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	+	8.76364	9.67e-05	0.276	ATCATGTGAT
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	-	8.76364	9.67e-05	0.276	ATCATGTGAT
SREBF2(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	-	8.76364	9.67e-05	0.276	ATCATGTGAT
JUNB	WILDTYPE__Antisense.noflip.NA__chr7:124632991..124633105,+__776.1.0.0	77	87	-	10.2857	9.67e-05	0.269	GTATGACTAAG
ELF4	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	98	109	+	8.19672	9.67e-05	0.131	AACCAGGAGGTG
ELF4	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	6	17	-	8.19672	9.67e-05	0.131	AACCAGGAGGTG
ELF4	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	56	67	-	8.19672	9.67e-05	0.131	AAAGAGGAAGTC
RUNX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.0	26	36	+	10.7759	9.67e-05	0.303	CATTGTGGTTG
RUNX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.1.1	26	36	+	10.7759	9.67e-05	0.303	CATTGTGGTTG
RUNX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:116286634..116286748,-__1409.1.0.0	26	36	+	10.7759	9.67e-05	0.303	CATTGTGGTTG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr11:10920834..10920948,-__152.1.0.0	9	22	+	9.48077	9.67e-05	0.0318	TCCACACTCCCACC
EGR1	WILDTYPE__Enhancer.flip.sense__chr10:81091665..81091779,-__2140.1.0.0	17	30	-	9.48077	9.67e-05	0.0318	GCCCAGCCCCCTTG
EGR1	FLIPPED__Enhancer.flip.antisense__chr10:81091685..81091799,-__2846.1.0.0	37	50	-	9.48077	9.67e-05	0.0318	GCCCAGCCCCCTTG
EGR1	WILDTYPE__Enhancer.flip.sense__chr10:81091685..81091799,+__1847.1.0.0	65	78	+	9.48077	9.67e-05	0.0318	GCCCAGCCCCCTTG
EGR1	FLIPPED__Enhancer.flip.antisense__chr10:81091665..81091779,+__2562.1.0.0	85	98	+	9.48077	9.67e-05	0.0318	GCCCAGCCCCCTTG
EGR1	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	84	97	-	9.48077	9.67e-05	0.0318	ACCTCACCTCCTCC
E2F8	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	94	105	+	2.89024	9.67e-05	0.631	TTTTTCCCCAAT
E2F6	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	18	28	-	10.1207	9.67e-05	0.0887	AAGAGGGAGCC
E2F6	WILDTYPE__Antisense.noflip.NA__chr5:76382477..76382591,+__703.1.0.0	43	53	-	10.1207	9.67e-05	0.0887	CGGAGGGAGAA
E2F6	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	97	107	-	10.1207	9.67e-05	0.0887	AAGAGGGAGCC
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.1.0	66	77	-	9.96552	9.67e-05	1	GAAACAGGTCTA
GRHL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.1	66	77	-	9.96552	9.67e-05	1	GAAACAGGTCTA
GRHL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.0.0	66	77	-	9.96552	9.67e-05	1	GAAACAGGTCTA
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.3.0	66	77	-	9.96552	9.67e-05	1	GAAACAGGTCTA
GRHL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:47793086..47793200,+__1955.1.2.0	66	77	-	9.96552	9.67e-05	1	GAAACAGGTCTA
Mitf	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	12	21	-	10.3878	9.67e-05	0.288	CGTCACGGGC
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.1	24	33	-	10.3878	9.67e-05	0.288	AATCATGTGG
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.1.0	24	33	-	10.3878	9.67e-05	0.288	AATCATGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:189321810..189321924,+__624.1.0.0	24	33	-	10.3878	9.67e-05	0.288	AATCATGTGG
Mitf	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	42	51	+	10.3878	9.67e-05	0.288	CGTCACGGGC
Mitf	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	64	73	-	10.3878	9.67e-05	0.288	CGTCACGGGC
Mitf	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	76	85	+	10.3878	9.67e-05	0.288	AATCATGTGG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
ETS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	10.7931	9.68e-05	0.12	GCCGGAAGGG
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	93	102	+	7.17308	9.68e-05	0.235	GGCACGTGTT
BHLHE41	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	93	102	+	7.17308	9.68e-05	0.235	GGCACGTGTT
CEBPE	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.1	98	107	+	10.8727	9.68e-05	0.806	GTTGCGCCAT
CEBPE	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:7222095..7222209,+__1242.1.2.0	98	107	+	10.8727	9.68e-05	0.806	GTTGCGCCAT
HOXD13	WILDTYPE__Antisense.noflip.NA__chr12:109491754..109491868,-__207.1.0.0	70	79	-	10.7937	9.68e-05	1	GCTATAAAAA
CDX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.0.0	27	35	+	10.8113	9.68e-05	1	ATAATAAAA
CDX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:68845441..68845555,-__248.1.1.0	27	35	+	10.8113	9.68e-05	1	ATAATAAAA
PPARG	WILDTYPE__Lincrna.noflip.NA__chr5:33049463..33049577,-__687.1.0.0	4	23	+	6.07778	9.68e-05	1	GTGGGGCACAGTGTCTGCTT
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	15	29	-	8.95455	9.68e-05	0.37	ACCTGTGAGTCACCA
Nfe2l2	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	32	46	+	8.95455	9.68e-05	0.37	ACCTGTGAGTCACCA
TGIF1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	2	13	+	-1.26923	9.68e-05	0.932	TCACACATGTCA
TGIF1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	102	113	-	-1.26923	9.68e-05	0.932	TCACACATGTCA
RREB1	WILDTYPE__Antisense.noflip.NA__chr10:75012461..75012575,+__138.1.0.0	38	57	-	2.52294	9.68e-05	0.0765	CCACAAGACACCACGAGAAA
MYBL1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	43	54	-	9.08621	9.68e-05	1	GAAGTTAACGCT
MYBL1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	43	54	-	9.08621	9.68e-05	1	GAAGTTAACGCT
TBX20	WILDTYPE__Lincrna.noflip.NA__chr2:7865830..7865944,+__448.1.0.0	54	64	-	10.0152	9.68e-05	1	GAGGTGTTAGA
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.1.0	23	37	+	9.58621	9.68e-05	0.0195	GCCCCACCCAGCTGT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465680..49465794,-__2072.1.0.0	23	37	+	9.58621	9.68e-05	0.0195	GCCCCACCCAGCTGT
SP2	WILDTYPE__Antisense.noflip.NA__chr20:61148698..61148812,-__488.1.0.0	32	46	+	9.58621	9.68e-05	0.0195	GCCCTGCCCCTGTAA
SP2	WILDTYPE__Lincrna.noflip.NA__chr8:65285786..65285900,+__865.1.0.0	20	34	-	9.58621	9.68e-05	0.0195	CTCCCTCCCTGCCTC
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.1.0	80	94	-	9.58621	9.68e-05	0.0195	GCCCCACCCAGCTGT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:49465678..49465792,+__1779.1.0.0	80	94	-	9.58621	9.68e-05	0.0195	GCCCCACCCAGCTGT
ZBTB7B	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	14	25	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	18	29	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	29	40	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	36	47	-	9.7069	9.68e-05	0.365	GTGACCCCCGTC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	39	50	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	46	57	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	49	60	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	49	60	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	49	60	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	49	60	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	49	60	-	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	35	46	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	35	46	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	35	46	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	35	46	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	55	66	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	58	69	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB7B	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	68	79	+	9.7069	9.68e-05	0.365	GTGACCCCCGTC
ZBTB7B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171201..128171315,+__2008.1.2.0	68	79	+	9.7069	9.68e-05	0.365	GGGACCCCCCCG
ZBTB7B	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	90	101	+	9.7069	9.68e-05	0.365	CCGCCCCCCGCG
ZBTB18	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	17	29	-	8.8	9.68e-05	0.769	GGTCCAGATGGGC
ZBTB18	WILDTYPE__Lincrna.noflip.NA__chr13:64650142..64650256,-__272.1.0.0	46	58	-	8.8	9.68e-05	0.769	GGTCCAGATGGGC
SCRT1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	77	91	+	6.03279	9.68e-05	1	TGTCAACAGGCGGGG
SCRT1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	24	38	-	6.03279	9.68e-05	1	TGTCAACAGGCGGGG
BATF::JUN	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	2	12	-	10.5962	9.68e-05	0.462	AGCATGACTCA
BATF::JUN	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	103	113	+	10.5962	9.68e-05	0.462	AGCATGACTCA
TBX19	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.1.0	13	32	+	8.41463	9.68e-05	1	AGTCCCACAGAGATGAGAGA
TBX19	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:160147114..160147228,+__957.1.0.0	13	32	+	8.41463	9.68e-05	1	AGTCCCACAGAGATGAGAGA
TBX19	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	22	41	+	8.41463	9.68e-05	1	GCTGTCATCCACGTGTTACC
TBX19	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	22	41	+	8.41463	9.68e-05	1	GCTGTCATCCACGTGTTACC
USF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.1.0	22	32	-	10.2653	9.68e-05	0.239	AACATGTGACG
USF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:11324047..11324161,+__1811.1.0.0	22	32	-	10.2653	9.68e-05	0.239	AACATGTGACG
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.0.0	10	21	+	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160301..234160415,+__1566.1.1.0	10	21	+	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.0.0	42	53	+	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:234160269..234160383,+__1565.1.1.0	42	53	+	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
ELF1	FLIPPED__Antisense.flip.antisense__chr5:87564628..87564742,-__2708.1.0.0	82	93	+	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
ELF1	WILDTYPE__Antisense.flip.sense__chr5:87564628..87564742,+__710.1.0.0	22	33	-	7.92727	9.68e-05	0.138	GAGCCGGAAGAC
SCRT2	WILDTYPE__Enhancer.noflip.NA__chr9:114823651..114823765,-__2118.1.0.0	102	114	+	5.52459	9.69e-05	1	CAGCCACAGCTGC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	18	27	-	10.0769	9.69e-05	0.308	ATCACGTGGC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.1.0	18	27	-	10.0769	9.69e-05	0.308	ATCACGTGGC
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr2:47572180..47572294,-__438.1.0.0	49	58	+	10.0769	9.69e-05	0.308	ATCACGTGGC
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	94	103	-	10.0769	9.69e-05	0.308	GGCACGCGCC
E2F3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	16	33	+	1.43636	9.69e-05	1	CCATGTCGCGCCCAATCA
E2F3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	16	33	+	1.43636	9.69e-05	1	CCATGTCGCGCCCAATCA
E2F7	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	42	55	-	-6.22951	9.69e-05	1	TTTTCCCCCCTCTT
E2F7	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	60	73	+	-6.22951	9.69e-05	1	TTTTCCCCCCTCTT
PAX1	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	4	20	+	4.30909	9.69e-05	0.619	CGACCCGCAGGACCGGC
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	24	40	+	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	24	40	+	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	24	40	+	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	24	40	+	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	43	59	-	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	43	59	-	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	43	59	-	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	43	59	-	4.30909	9.69e-05	0.619	AGTCCTGCATGGGGGAG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	95	111	-	4.30909	9.69e-05	0.619	CGACCCGCAGGACCGGC
PAX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	95	111	-	4.30909	9.69e-05	0.619	CGACCCGCAGGACCGGC
PAX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	95	111	-	4.30909	9.69e-05	0.619	CGACCCGCAGGACCGGC
PAX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	95	111	-	4.30909	9.69e-05	0.619	CGACCCGCAGGACCGGC
Myog	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	16	26	+	10.7755	9.69e-05	0.19	AGCAGGTGGCA
Myog	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	64	74	-	10.7755	9.69e-05	0.19	AGCAGGTGGCA
Myog	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	92	102	-	10.7755	9.69e-05	0.19	AGCAGGTGGCA
Myog	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.1.0	97	107	-	10.7755	9.69e-05	0.19	CACAGCTGTTA
Myog	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:26189305..26189419,-__1655.1.0.0	97	107	-	10.7755	9.69e-05	0.19	CACAGCTGTTA
TFAP2A(var.3)	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	94	106	+	9.37705	9.69e-05	0.0589	AGCCCGAGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	84	96	-	9.37705	9.69e-05	0.0589	GCCCTGCAGGGCT
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	84	96	-	9.37705	9.69e-05	0.0589	GCCCTGCAGGGCT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.2.0	91	103	-	9.37705	9.69e-05	0.0589	TGCCTGCGCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.0.0	91	103	-	9.37705	9.69e-05	0.0589	TGCCTGCGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.1.0	91	103	-	9.37705	9.69e-05	0.0589	TGCCTGCGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.1	91	103	-	9.37705	9.69e-05	0.0589	TGCCTGCGCGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:98189077..98189191,-__919.1.3.0	91	103	-	9.37705	9.69e-05	0.0589	TGCCTGCGCGGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.1.0	4	13	-	9.67832	9.69e-05	0.125	TCCACGCGCG
Hes1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.0.0	4	13	-	9.67832	9.69e-05	0.125	TCCACGCGCG
Hes1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:2609217..2609331,+__1292.1.2.0	4	13	-	9.67832	9.69e-05	0.125	TCCACGCGCG
Hes1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	16	25	+	9.67832	9.69e-05	0.125	TCCACGCGCG
Hes1	WILDTYPE__Antisense.noflip.NA__chr8:30242773..30242887,-__851.1.0.0	30	39	-	9.67832	9.69e-05	0.125	TCCACGCGCG
Hes1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	90	99	-	9.67832	9.69e-05	0.125	TCCACGCGCG
ZNF143	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.1.0	49	64	-	-0.0862069	9.69e-05	0.475	ATCCCAGGATCCCACC
ZNF143	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr3:101659611..101659725,+__536.1.0.0	49	64	-	-0.0862069	9.69e-05	0.475	ATCCCAGGATCCCACC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	23	34	-	10.1974	9.69e-05	0.0398	CCCACCCCTCCA
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	23	34	-	10.1974	9.69e-05	0.0398	CCCACCCCTCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	23	34	-	10.1974	9.69e-05	0.0398	CCCACCCCTCCA
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	23	34	-	10.1974	9.69e-05	0.0398	CCCACCCCTCCA
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.1.0	28	39	-	10.1974	9.69e-05	0.0398	GCCCCGCCTCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166359..58166473,+__1487.1.2.1	28	39	-	10.1974	9.69e-05	0.0398	GCCCCGCCTCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:59762425..59762539,+__1435.1.1.0	41	52	-	10.1974	9.69e-05	0.0398	GCCCCGCCTCGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	70	81	-	10.1974	9.69e-05	0.0398	GCCCCGCCTCGC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	70	81	-	10.1974	9.69e-05	0.0398	GCCCCGCCTCGC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.0	62	76	+	10.2793	9.69e-05	0.19	GTAGGGGAGGGCTCA
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.2.1	62	76	+	10.2793	9.69e-05	0.19	GTAGGGGAGGGCTCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.0.0	62	76	+	10.2793	9.69e-05	0.19	GTAGGGGAGGGCTCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr13:99852893..99853007,-__276.1.1.0	62	76	+	10.2793	9.69e-05	0.19	GTAGGGGAGGGCTCA
Pparg::Rxra	FLIPPED__Lincrna.flip.antisense__chr13:99852893..99853007,+__2359.1.0.0	39	53	-	10.2793	9.69e-05	0.19	GTAGGGGAGGGCTCA
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.0.0	52	64	+	10.8163	9.69e-05	0.202	TTCAGCTGTGAGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:31285000..31285114,-__1247.1.1.0	52	64	+	10.8163	9.69e-05	0.202	TTCAGCTGTGAGC
GSC2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32634399..32634513,-__1666.1.9.1	15	24	+	10.2881	9.69e-05	1	TCTAATCCTA
Foxo1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	93	103	+	10.931	9.69e-05	0.902	ACTTGTTTCCA
Foxo1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	93	103	+	10.931	9.69e-05	0.902	ACTTGTTTCCA
Foxo1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	93	103	+	10.931	9.69e-05	0.902	ACTTGTTTCCA
Foxo1	WILDTYPE__Enhancer.noflip.NA__chr10:70805394..70805508,-__2040.1.0.0	36	46	-	10.931	9.69e-05	0.902	ACTTGTTTCCA
Nr2f6(var.2)	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	28	42	+	-7.31429	9.69e-05	1	GAGATGCAAATGTCA
FOXP1	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	52	66	+	10.338	9.69e-05	0.404	AAAGGAAAAACAATA
Nr2f6	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	55	68	-	7.86364	9.69e-05	0.489	AAGGGCATGGGCCA
Nr2f6	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	47	60	+	7.86364	9.69e-05	0.489	AAGGGCATGGGCCA
Nr2f6	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	47	60	+	7.86364	9.69e-05	0.489	AAGGGCATGGGCCA
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr6:11299526..11299640,+__1971.1.0.0	44	61	+	-16.2237	9.69e-05	0.0564	ACAAAGAGGCCAGGAAGT
EWSR1-FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.1.0	46	63	-	-16.2237	9.69e-05	0.0564	AGAAGGAGGAGGGCAAGG
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr6:11299526..11299640,-__2893.1.0.0	54	71	-	-16.2237	9.69e-05	0.0564	ACAAAGAGGCCAGGAAGT
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	14	28	-	-4.23636	9.69e-05	0.734	CTAGGAACTGAAAGC
IRF9	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	84	98	+	-4.23636	9.69e-05	0.734	CTAGGAACTGAAAGC
PLAG1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	47	60	+	4.45918	9.69e-05	0.0785	GGGGACCAGGCGGG
CEBPB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	65	74	+	10.82	9.7e-05	0.822	CTTACGTAAT
CEBPB	WILDTYPE__mrna.noflip.NA__chr5:70751371..70751485,+__1386.1.0.0	60	69	-	10.82	9.7e-05	0.822	ATTGCGCCAT
CEBPB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.0	88	97	+	10.82	9.7e-05	0.822	ATTGCGCCAT
CEBPB	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.1.1	88	97	+	10.82	9.7e-05	0.822	ATTGCGCCAT
CEBPB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395692..49395806,-__1624.1.0.0	88	97	+	10.82	9.7e-05	0.822	ATTGCGCCAT
RARA::RXRA	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	5	21	+	8.97959	9.7e-05	0.405	AGGTTAGCGAGAAGGAA
RARA::RXRA	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	39	55	+	8.97959	9.7e-05	0.405	AGGTTAGCGAGAAGGAA
RARA::RXRA	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	60	76	-	8.97959	9.7e-05	0.405	AGGTTAGCGAGAAGGAA
RARA::RXRA	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	94	110	-	8.97959	9.7e-05	0.405	AGGTTAGCGAGAAGGAA
TFAP2C(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	3	13	-	10.6154	9.7e-05	0.0771	TCCCTGAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.0.0	4	14	-	10.6154	9.7e-05	0.0771	GGCCTGAGGGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:49395727..49395841,-__1625.1.1.0	4	14	-	10.6154	9.7e-05	0.0771	GGCCTGAGGGT
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr2:164592477..164592591,-__1328.1.0.0	41	51	-	10.6154	9.7e-05	0.0771	TGCCAGAGGCT
TFAP2C(var.2)	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	52	62	+	10.6154	9.7e-05	0.0771	TGCCAGAGGCT
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr11:568382..568496,-__179.1.0.0	67	78	-	10.6613	9.7e-05	0.281	TCGCCCCCCGGC
MAFF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	1	18	+	10.2	9.7e-05	0.965	GAGTTATCAGCAAATACA
MAFF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	1	18	+	10.2	9.7e-05	0.965	GAGTTATCAGCAAATACA
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.0.0	8	17	-	9.99083	9.7e-05	0.0559	GTCCCCCCAA
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr10:54515153..54515267,-__130.1.1.0	8	17	-	9.99083	9.7e-05	0.0559	GTCCCCCCAA
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	103	112	-	9.99083	9.7e-05	0.0559	CCCTCCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	103	112	-	9.99083	9.7e-05	0.0559	CCCTCCCCAT
MEF2C	WILDTYPE__Enhancer.noflip.NA__chr1:87800767..87800881,+__1842.1.0.0	24	38	+	10.2881	9.7e-05	1	CTTACAAAAATAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	1	10	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	1	10	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	2	11	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	FLIPPED__Antisense.flip.antisense__chr11:77850722..77850836,-__2637.1.0.0	6	15	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	6	15	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	38	47	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	38	47	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	38	47	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	38	47	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	38	47	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE__mrna.noflip.NA__chr3:40566417..40566531,+__1078.1.0.0	32	41	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	10.4468	9.7e-05	0.141	AACGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.2.0	47	56	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.1.0	47	56	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:77850775..77850889,+__200.1.0.0	47	56	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	FLIPPED__Lincrna.flip.antisense__chr8:30601601..30601715,-__2727.1.0.0	46	55	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	60	69	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.0.0	60	69	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	10.4468	9.7e-05	0.141	AACGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	10.4468	9.7e-05	0.141	AACGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.0.0	81	90	-	10.4468	9.7e-05	0.141	ACCGGAACTA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:146277773..146277887,+__1250.1.1.0	81	90	-	10.4468	9.7e-05	0.141	ACCGGAACTA
FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.1.0	89	98	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:24256287..24256401,+__1796.1.0.0	89	98	-	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.1.0	100	109	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.2.0	100	109	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:77850722..77850836,+__199.1.0.0	100	109	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
FLI1	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	100	109	+	10.4468	9.7e-05	0.141	GCCGGAAGGG
ERF	FLIPPED__Antisense.flip.antisense__chr14:75593729..75593843,-__2644.1.0.0	49	58	+	10.4143	9.7e-05	0.135	GCCGGAAACA
ERF	WILDTYPE__Antisense.flip.sense__chr14:75593729..75593843,+__301.1.0.0	57	66	-	10.4143	9.7e-05	0.135	GCCGGAAACA
ERF	WILDTYPE__mrna.noflip.NA__chr11:74699898..74700012,+__1390.1.0.0	70	79	-	10.4143	9.7e-05	0.135	GCCGGAAACA
ERF	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	99	108	+	10.4143	9.7e-05	0.135	GCCGGAAACA
HES7	WILDTYPE__Lincrna.noflip.NA__chr1:84326664..84326778,-__93.1.0.0	6	17	-	2.01724	9.7e-05	0.224	TGGCACGTGGGC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:64173609..64173723,+__1375.1.0.0	36	52	-	2.45455	9.7e-05	0.036	CAGGCCCAGCCCGTTTC
SP4	WILDTYPE__Lincrna.noflip.NA__chr3:70048804..70048918,+__590.1.0.0	53	69	+	2.45455	9.7e-05	0.036	TAAAAACCGCCCCCCGC
FOXP2	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	50	60	+	10.7879	9.7e-05	1	AGGAAAACAGG
CREB3L1	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	41	54	+	7.62121	9.7e-05	0.365	TCTCCACGTCACAC
TP63	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	23	40	-	-3.74138	9.7e-05	1	GGCACGCCGGGAGATGTA
E2F4	FLIPPED__mrna.flip.antisense__chr3:112738478..112738592,+__2504.1.0.0	20	30	+	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.0.0	34	44	+	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	34	44	+	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	59	69	+	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.0.0	59	69	+	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE__mrna.flip.sense__chr3:112738478..112738592,-__1190.1.0.0	85	95	-	9.87931	9.7e-05	0.0527	AGGCGGGGGGA
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.1.0	101	111	-	9.87931	9.7e-05	0.0527	GAGCGCGAGGC
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:98109106..98109220,-__722.1.0.0	101	111	-	9.87931	9.7e-05	0.0527	GAGCGCGAGGC
EGR3	FLIPPED__mrna.flip.antisense__chr12:100967382..100967496,-__2743.1.0.0	10	24	+	5.22414	9.7e-05	0.0419	AACCGCCGCCGCTGC
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.0.0	62	76	-	5.22414	9.7e-05	0.0419	ATCCGCCGCCGCCGC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:33160607..33160721,+__1490.1.1.0	62	76	-	5.22414	9.7e-05	0.0419	ATCCGCCGCCGCCGC
EGR3	WILDTYPE__mrna.flip.sense__chr12:100967382..100967496,+__993.1.0.0	91	105	-	5.22414	9.7e-05	0.0419	AACCGCCGCCGCTGC
RFX3	WILDTYPE__mrna.noflip.NA__chr11:67171321..67171435,+__988.1.0.0	46	61	-	8.43939	9.7e-05	0.439	CACAGCTTTGGCAACC
ESR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	82	98	+	-1.81818	9.7e-05	0.514	TCTGTCGGAGCGACCGG
ESR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	82	98	+	-1.81818	9.7e-05	0.514	TCTGTCGGAGCGACCGG
ESR1	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	90	106	+	-1.81818	9.7e-05	0.514	GATGGCAGGATGACAGA
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	17	29	-	10.5244	9.7e-05	1	GAAGTGTGATCGG
EOMES	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	17	29	-	10.5244	9.7e-05	1	GAAGTGTGATCGG
EOMES	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	43	55	-	10.5244	9.7e-05	1	GAAGTGTGATCGG
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	43	55	-	10.5244	9.7e-05	1	GAAGTGTGATCGG
EOMES	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	60	72	-	10.5244	9.7e-05	1	GTGGTGTGAATCA
EOMES	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	60	72	-	10.5244	9.7e-05	1	GTGGTGTGAATCA
SREBF2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.1.0	63	72	-	10.4045	9.7e-05	0.883	GTGGTGTGAA
SREBF2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:157670668..157670782,-__1421.1.0.0	63	72	-	10.4045	9.7e-05	0.883	GTGGTGTGAA
TEAD1	FLIPPED__Antisense.flip.antisense__chr8:107072655..107072769,+__2431.1.0.0	27	36	-	10.871	9.7e-05	1	CGCATTCTAC
TEAD1	WILDTYPE__Antisense.flip.sense__chr8:107072655..107072769,-__826.1.0.0	79	88	+	10.871	9.7e-05	1	CGCATTCTAC
GLIS1	WILDTYPE__Antisense.noflip.NA__chr8:77595478..77595592,-__869.1.0.0	18	33	-	-11.3462	9.7e-05	0.33	CCGGCCCCCACTTTGT
TCF3	FLIPPED__Antisense.flip.antisense__chr12:56122813..56122927,-__2640.1.0.0	16	25	-	11.4038	9.7e-05	0.404	AACAGCTGCG
TCF3	WILDTYPE__Antisense.flip.sense__chr12:56122813..56122927,+__240.1.0.0	90	99	+	11.4038	9.7e-05	0.404	AACAGCTGCG
BATF3	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	38	51	-	-0.590909	9.7e-05	0.269	TTCAGACGTCACCT
Rfx1	WILDTYPE__mrna.noflip.NA__chr9:113761711..113761825,-__1120.1.0.0	25	38	+	9.32759	9.7e-05	0.337	GCTTTCATAGCAGC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.0.0	74	87	-	9.32759	9.7e-05	0.337	CGAACCCTGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.0	74	87	-	9.32759	9.7e-05	0.337	CGAACCCTGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.1.0	74	87	-	9.32759	9.7e-05	0.337	CGAACCCTGGCGAC
Rfx1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:57435223..57435337,+__1467.1.2.1	74	87	-	9.32759	9.7e-05	0.337	CGAACCCTGGCGAC
BHLHE22	FLIPPED__Enhancer.flip.antisense__chr19:42037894..42038008,+__2610.1.0.0	77	86	-	10.3485	9.7e-05	1	AGCATACGTC
BHLHE22	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.0.0	29	38	+	10.3485	9.7e-05	1	AGCATACGTC
BHLHE22	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr19:42037894..42038008,-__2293.1.1.0	29	38	+	10.3485	9.7e-05	1	AGCATACGTC
ZIC1	WILDTYPE__mrna.flip.sense__chr5:38556713..38556827,-__1205.1.0.0	36	49	+	5.21277	9.7e-05	0.106	CGCCCCCAGCCGAG
ZIC1	FLIPPED__mrna.flip.antisense__chr5:38556713..38556827,+__2513.1.0.0	66	79	-	5.21277	9.7e-05	0.106	CGCCCCCAGCCGAG
POU4F3	WILDTYPE__Lincrna.noflip.NA__chr13:30996348..30996462,-__264.1.0.0	42	57	-	10.1496	9.7e-05	1	ATAAATAAATAACTAC
RREB1	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	50	69	-	2.51376	9.71e-05	0.0765	CACAAAACCACAGCCACCAC
RREB1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.1.0	64	83	-	2.51376	9.71e-05	0.0765	CTCGAAAACACCAAAAACAA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.1.0	64	83	-	2.51376	9.71e-05	0.0765	CCCCAAATAAACAACTACTT
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:75741656..75741770,-__2243.1.0.0	64	83	-	2.51376	9.71e-05	0.0765	CCCCAAATAAACAACTACTT
STAT3	WILDTYPE__Antisense.flip.sense__chr17:74553771..74553885,+__371.1.0.0	42	52	+	10.449	9.71e-05	0.352	TTGCCGAGAAG
STAT3	FLIPPED__Antisense.flip.antisense__chr17:74553771..74553885,-__2659.1.0.0	63	73	-	10.449	9.71e-05	0.352	TTGCCGAGAAG
STAT3	WILDTYPE__Enhancer.noflip.NA__chr21:37670583..37670697,-__2087.1.0.0	96	106	-	10.449	9.71e-05	0.352	GTGCTGAGAAA
Zfx	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	13	26	+	9.89394	9.71e-05	0.0692	CCGGGCGACGCCTC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	12	25	-	9.89394	9.71e-05	0.0692	CCGGGCCAGCCCTC
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.1.0	69	82	-	9.89394	9.71e-05	0.0692	GCCGGGGAGGCCTC
GLIS2	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	30	43	-	7.19672	9.71e-05	0.189	GACCCCCTGCCCTC
GLIS2	WILDTYPE__Lincrna.noflip.NA__chr20:48789024..48789138,+__479.1.0.0	43	56	+	7.19672	9.71e-05	0.189	TGCCTCCCGCTTTG
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr8:38009583..38009697,-__2212.1.0.0	73	86	+	7.19672	9.71e-05	0.189	GCCCCCCCCCGCCC
INSM1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:15450961..15451075,+__1967.1.0.0	57	68	-	8.7449	9.71e-05	0.207	AGCAAGGGGTAA
SP1	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	11	21	+	10	9.71e-05	0.0218	TTCCCGCCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	31	41	-	10	9.71e-05	0.0218	CTCCCGCCTTT
SP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	32	42	-	10	9.71e-05	0.0218	CTCCCGCCTTT
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	32	42	-	10	9.71e-05	0.0218	CTCCCGCCTTT
ZBTB7A	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	20	31	+	10.2	9.71e-05	0.238	TCCACCCACCGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.0.0	16	28	-	8.90164	9.71e-05	0.0652	TCCCGCCAGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:13521485..13521599,-__547.1.1.0	16	28	-	8.90164	9.71e-05	0.0652	TCCCGCCAGGGGG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	75	87	-	8.90164	9.71e-05	0.0652	GGCCTCTCGGGGT
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	75	87	-	8.90164	9.71e-05	0.0652	GGCCTCTCGGGGT
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	55	71	-	1.98361	9.71e-05	0.563	GGCGCATGCGCGGGTCA
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.1.0	55	71	-	1.98361	9.71e-05	0.563	GGCGCATGCGCGGGTCA
Hes2	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	3	15	+	10.3492	9.71e-05	0.577	GCTCGGCGCGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	25	37	+	10.3492	9.71e-05	0.577	GAGGGACACGCGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.1.0	25	37	+	10.3492	9.71e-05	0.577	GAGGGACACGCGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	16	28	-	10.3492	9.71e-05	0.577	CGGCCGCACGTGA
Hes2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	16	28	-	10.3492	9.71e-05	0.577	CGGCCGCACGTGA
Hes2	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	35	47	-	10.3492	9.71e-05	0.577	GCTCGGCGCGTGC
Hes2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	38	50	-	10.3492	9.71e-05	0.577	GGTCGGCGCGTGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	38	50	-	10.3492	9.71e-05	0.577	GGTCGGCGCGTGC
Hes2	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	68	80	+	10.3492	9.71e-05	0.577	GCTCGGCGCGTGC
Hes2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	96	108	-	10.3492	9.71e-05	0.577	CGGCCGCACGTGA
Hes2	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	100	112	-	10.3492	9.71e-05	0.577	GCTCGGCGCGTGC
Esrra	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	36	46	+	6.36364	9.71e-05	1	CTCAAGGTGGC
Esrra	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	69	79	-	6.36364	9.71e-05	1	CTCAAGGTGGC
Esrra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	69	79	-	6.36364	9.71e-05	1	CTCAAGGTGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	22	-	8.77586	9.71e-05	0.0581	TGCCGGGAAGGCC
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr4:7105074..7105188,-__641.1.0.0	35	47	-	8.77586	9.71e-05	0.0581	CGCCCACCAGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.1	65	77	+	8.77586	9.71e-05	0.0581	GGCCTCGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.3.0	65	77	+	8.77586	9.71e-05	0.0581	GGCCTCGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.1.0	65	77	+	8.77586	9.71e-05	0.0581	GGCCTCGCGGGGC
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.0.0	65	77	+	8.77586	9.71e-05	0.0581	GGCCTCGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:23618557..23618671,-__1579.1.2.0	65	77	+	8.77586	9.71e-05	0.0581	GGCCTCGCGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.0	101	113	-	8.77586	9.71e-05	0.0581	CGCCTAGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.2.1	101	113	-	8.77586	9.71e-05	0.0581	CGCCTAGCGGGCT
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.1.0	101	113	-	8.77586	9.71e-05	0.0581	CGCCTAGCGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8274209..8274323,+__1544.1.0.0	101	113	-	8.77586	9.71e-05	0.0581	CGCCTAGCGGGCT
POU2F1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	60	71	-	10.59	9.71e-05	1	GACATGCTAATA
TP73	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.0.0	72	89	-	7.55769	9.71e-05	0.744	GGCAGGCGAGAGCTTGTA
TP73	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:20616428..20616542,+__685.1.1.0	72	89	-	7.55769	9.71e-05	0.744	GGCAGGCGAGAGCTTGTA
CTCF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.0.0	22	40	+	7.83607	9.71e-05	0.136	CGGCCAGGGGGAGGGGCCG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.1.0	22	40	+	7.83607	9.71e-05	0.136	CGGCCAGGGGGAGGGGCCG
CTCF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:98638226..98638340,-__922.1.2.0	22	40	+	7.83607	9.71e-05	0.136	CGGCCAGGGGGAGGGGCCG
CTCF	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	18	36	-	7.83607	9.71e-05	0.136	CTGACACCAGATGTGGGTG
EHF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	72	83	+	9.44262	9.71e-05	0.152	GCGCCGGAAGTC
EHF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	72	83	+	9.44262	9.71e-05	0.152	GCGCCGGAAGTC
EHF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	72	83	+	9.44262	9.71e-05	0.152	GCGCCGGAAGTC
JUN	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.1.0	81	93	+	9.2449	9.71e-05	0.358	ACAATGATGACAG
JUN	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:173835815..173835929,-__34.1.0.0	81	93	+	9.2449	9.71e-05	0.358	ACAATGATGACAG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.0.0	22	36	+	7.14286	9.71e-05	0.129	GCCCTCCCGTCGTCC
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:16582746..16582860,-__1536.1.1.0	22	36	+	7.14286	9.71e-05	0.129	GCCCTCCCGTCGTCC
ZIC3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:213031405..213031519,-__51.1.2.0	42	56	-	7.14286	9.71e-05	0.129	GGCCTCCCGAAGTTC
PKNOX1	FLIPPED__Enhancer.flip.antisense__chr10:81961484..81961598,+__2563.1.0.0	12	23	-	1.16327	9.71e-05	1	TAACAGATGTGA
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	+	1.16327	9.71e-05	1	TGACAAATGTGA
PKNOX1	FLIPPED__Enhancer.flip.antisense__chr10:81961443..81961557,-__2847.1.0.0	51	62	+	1.16327	9.71e-05	1	TAACAGATGTGA
PKNOX1	WILDTYPE__Enhancer.flip.sense__chr10:81961443..81961557,+__1848.1.0.0	53	64	-	1.16327	9.71e-05	1	TAACAGATGTGA
PKNOX1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	-	1.16327	9.71e-05	1	TGACAAATGTGA
PKNOX1	WILDTYPE__Enhancer.flip.sense__chr10:81961484..81961598,-__2141.1.0.0	92	103	+	1.16327	9.71e-05	1	TAACAGATGTGA
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	61	71	+	10	9.71e-05	0.0606	CTCCACGCCCT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.1.0	13	33	+	8.03226	9.72e-05	0.19	TTTTCTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.0.0	13	33	+	8.03226	9.72e-05	0.19	TTTTCTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.1	18	38	+	8.03226	9.72e-05	0.19	TTTTCTTTTTTTTTTTTTTTT
IRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:58571872..58571986,-__1645.1.2.0	18	38	+	8.03226	9.72e-05	0.19	TTTTCTTTTTTTTTTTTTTTT
IRF1	WILDTYPE__Enhancer.noflip.NA__chr4:69814099..69814213,+__1804.1.0.0	54	74	+	8.03226	9.72e-05	0.19	TTTTCTTTTTTTTTTTTTTTT
Dlx2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.38	9.72e-05	1	CCAATTAC
Dlx2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.38	9.72e-05	1	CCAATTAC
Dlx2	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.38	9.72e-05	1	CCAATTAC
Dlx2	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.38	9.72e-05	1	CCAATTAC
Msx3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	8	15	+	11.283	9.72e-05	1	GCAATTAA
Msx3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	8	15	+	11.283	9.72e-05	1	GCAATTAA
Msx3	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	57	64	+	11.283	9.72e-05	1	GCAATTAA
Msx3	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	57	64	+	11.283	9.72e-05	1	GCAATTAA
Msx3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	51	58	-	11.283	9.72e-05	1	GCAATTAA
Msx3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	51	58	-	11.283	9.72e-05	1	GCAATTAA
MSX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.0.0	53	60	-	11.0909	9.72e-05	1	GCAATTAG
MSX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:64680803..64680917,+__1496.1.1.0	53	60	-	11.0909	9.72e-05	1	GCAATTAG
MSX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.1.0	83	90	-	11.0909	9.72e-05	1	GCAATTAG
MSX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:48516393..48516507,+__1483.1.0.0	83	90	-	11.0909	9.72e-05	1	GCAATTAG
MSX2	WILDTYPE__Lincrna.noflip.NA__chrX:27417072..27417186,-__934.1.0.0	99	106	+	11.0909	9.72e-05	1	GCAATTAG
FOXO3	FLIPPED__Lincrna.flip.antisense__chr1:762867..762981,+__2333.1.0.0	33	40	+	9.59091	9.72e-05	1	GTCAACAA
FOXO3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:762867..762981,-__90.1.1.0	75	82	-	9.59091	9.72e-05	1	GTCAACAA
FOXO3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:762867..762981,-__90.1.0.0	75	82	-	9.59091	9.72e-05	1	GTCAACAA
EN1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	6	13	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	6	13	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	13	20	-	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	27	34	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	27	34	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	48	55	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	48	55	+	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	43	50	-	10.7119	9.72e-05	1	CCAATTAC
EN1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	43	50	-	10.7119	9.72e-05	1	CCAATTAC
EN1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	65	72	+	10.7119	9.72e-05	1	CCAATTAC
EN1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	81	88	-	10.7119	9.72e-05	1	CCAATTAC
Rarb	WILDTYPE__Antisense.flip.sense__chr8:23082651..23082765,+__850.1.0.0	1	16	-	-5.86207	9.72e-05	1	AAAGGGGGCGGGGTCA
Rarb	WILDTYPE__mrna.flip.sense__chr8:23082577..23082691,-__1226.1.0.0	25	40	+	-5.86207	9.72e-05	1	AAAGGGGGCGGGGTCA
Rarb	FLIPPED__mrna.flip.antisense__chr8:23082577..23082691,+__2525.1.0.0	75	90	-	-5.86207	9.72e-05	1	AAAGGGGGCGGGGTCA
Rarb	FLIPPED__Antisense.flip.antisense__chr8:23082651..23082765,-__2726.1.0.0	99	114	+	-5.86207	9.72e-05	1	AAAGGGGGCGGGGTCA
NR2C2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.1.0	55	69	-	8.5	9.72e-05	0.122	GGAGGGAAGGGGTGG
NR2C2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145020573..145020687,-__1690.1.0.0	55	69	-	8.5	9.72e-05	0.122	GGAGGGAAGGGGTGG
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	24	38	+	8.5	9.72e-05	0.122	TGGTGGCGGGGGGCG
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	24	38	+	8.5	9.72e-05	0.122	TGGTGGCGGGGGGCG
NR2C2	WILDTYPE__Lincrna.noflip.NA__chr5:163723891..163724005,+__672.1.0.0	37	51	+	8.5	9.72e-05	0.122	GGGGGGCGAAGAGGA
NEUROD2	WILDTYPE__Enhancer.noflip.NA__chr5:159886218..159886332,-__2099.1.0.0	15	24	-	10.9828	9.72e-05	1	ACCACATGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:28617508..28617622,-__433.1.0.0	22	42	-	8.89796	9.72e-05	0.024	GAAGGTGCTGTTGGCGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr14:95623831..95623945,+__2487.1.0.0	50	70	-	8.89796	9.72e-05	0.024	GGAGCGTGGGGGCGCGGAGGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:88799375..88799489,-__1030.1.0.0	59	79	-	8.89796	9.72e-05	0.024	GAGGAGGAGAGGAGAGGGGGG
ZNF263	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	68	88	-	8.89796	9.72e-05	0.024	AGAGGCGTGGGTCAAGGGGAG
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:54393747..54393861,-__238.1.1.0	72	92	-	8.89796	9.72e-05	0.024	GAAAGAAGGCAAGGAAAAAAA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	83	103	-	8.89796	9.72e-05	0.024	GGAGCCGAGAGGGTGGGGGAC
ZNF263	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.0.0	14	34	+	8.89796	9.72e-05	0.024	GAAGGTAGCGCAGCGGGGAAA
ZNF263	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:19536933..19537047,+__38.1.1.0	14	34	+	8.89796	9.72e-05	0.024	GAAGGTAGCGCAGCGGGGAAA
ZNF263	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.1	16	36	+	8.89796	9.72e-05	0.024	GGTGGGGGATGGTGGTGGAGG
ZNF263	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.1.0	16	36	+	8.89796	9.72e-05	0.024	GGTGGGGGATGGTGGTGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:238343430..238343544,-__427.1.0.0	16	36	+	8.89796	9.72e-05	0.024	GGTGGGGGATGGTGGTGGAGG
ZNF263	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	23	43	+	8.89796	9.72e-05	0.024	GGGGGAGCGATCGAGGGAGCT
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	27	47	+	8.89796	9.72e-05	0.024	AGAGGCGTGGGTCAAGGGGAG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	27	47	+	8.89796	9.72e-05	0.024	AGAGGCGTGGGTCAAGGGGAG
ZNF263	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	30	50	+	8.89796	9.72e-05	0.024	GGGGCCGGGCGCGGGGGGCGG
ZNF263	WILDTYPE__mrna.flip.sense__chr14:95623831..95623945,-__1162.1.0.0	45	65	+	8.89796	9.72e-05	0.024	GGAGCGTGGGGGCGCGGAGGG
NKX3-2	WILDTYPE__mrna.noflip.NA__chr17:10452902..10453016,-__1036.1.0.0	65	73	-	11.0577	9.72e-05	1	CCCACTTAC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	32	42	+	10.5091	9.72e-05	0.0801	CGGTTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	32	42	+	10.5091	9.72e-05	0.0801	CGGTTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.0	32	42	+	10.5091	9.72e-05	0.0801	CGGTTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.2.1	32	42	+	10.5091	9.72e-05	0.0801	CGGTTTCCGCC
POU3F2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	2	13	+	10.2258	9.72e-05	1	AGATGCAAATGG
POU3F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	2	13	+	10.2258	9.72e-05	1	AGATGCAAATGG
POU3F2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.1.0	2	13	+	10.2258	9.72e-05	1	AGATGCAAATGG
POU3F2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.1	2	13	+	10.2258	9.72e-05	1	AGATGCAAATGG
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:29936810..29936924,-__1480.1.1.0	8	22	-	9.63636	9.72e-05	0.114	CGCCACCTCCTGCGC
ZIC4	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	49	63	-	9.63636	9.72e-05	0.114	GGCCCACCGCAGGGT
ZIC4	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	23	37	+	9.63636	9.72e-05	0.114	CACCACCCCCAGTGA
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	52	66	+	9.63636	9.72e-05	0.114	GGCCCACCGCAGGGT
ZIC4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	52	66	+	9.63636	9.72e-05	0.114	GGCCCACCGCAGGGT
ZIC4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	95	109	+	9.63636	9.72e-05	0.114	GGCCCACCGCAGGGT
ZIC4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	95	109	+	9.63636	9.72e-05	0.114	GGCCCACCGCAGGGT
TFCP2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	92	101	+	10.7121	9.72e-05	1	GATCCGGATC
TFCP2	WILDTYPE__mrna.noflip.NA__chr10:28822565..28822679,+__976.1.0.0	92	101	-	10.7121	9.72e-05	1	GATCCGGATC
GCM1	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	95	105	-	10.1633	9.72e-05	0.553	GATGATGGTAC
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.1.0	39	51	-	7.10606	9.72e-05	0.265	AGGGGAAGTTCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:30831727..30831841,+__1845.1.0.0	39	51	-	7.10606	9.72e-05	0.265	AGGGGAAGTTCCT
Nr5a2	WILDTYPE__Antisense.noflip.NA__chr4:57975978..57976092,+__635.1.0.0	96	110	-	9.36207	9.72e-05	0.506	GGGGAGAAGGCCATC
MTF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	48	61	-	5.23171	9.72e-05	0.538	GGTGCGCCCGCCCC
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	48	61	-	5.23171	9.72e-05	0.538	GGTGCGCCCGCCCC
CLOCK	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	15	24	+	10.5606	9.72e-05	0.601	TCCACGTGGT
CLOCK	WILDTYPE__Lincrna.noflip.NA__chr6:169562962..169563076,-__740.1.0.0	96	105	+	10.5606	9.72e-05	0.601	TCCACGTGGT
CLOCK	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	91	100	-	10.5606	9.72e-05	0.601	TCCACGTGGT
EN2	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	83	92	+	10.4068	9.72e-05	1	CCCCATTACC
Bach1::Mafk	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	23	37	-	6.21053	9.72e-05	0.299	GCAATGAGACTGCAG
Bach1::Mafk	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	78	92	+	6.21053	9.72e-05	0.299	GCAATGAGACTGCAG
Hoxb5	WILDTYPE__Lincrna.noflip.NA__chr1:65468084..65468198,-__85.1.0.0	9	24	-	10.5584	9.72e-05	1	ACGCTAATTATAGTAT
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	12	23	+	9.62069	9.72e-05	0.331	GCTACCACAATT
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	48	59	+	9.62069	9.72e-05	0.331	GCTACCACAATT
MAF::NFE2	WILDTYPE__Lincrna.noflip.NA__chr1:235116488..235116602,-__59.1.0.0	19	33	+	7.67213	9.72e-05	0.544	CTGACTCAGGATTGG
E2F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.0	27	44	-	1.41818	9.72e-05	1	AGGAGTGGCGCCCAACCC
E2F3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	27	44	-	1.41818	9.72e-05	1	AGGAGTGGCGCCCAACCC
E2F3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.0.0	27	44	-	1.41818	9.72e-05	1	AGGAGTGGCGCCCAACCC
E2F3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.1.0	27	44	-	1.41818	9.72e-05	1	AGGAGTGGCGCCCAACCC
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.0.0	20	29	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45965599..45965713,-__1433.1.1.0	20	29	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.2.0	37	46	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.1.0	37	46	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.1	37	46	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.3.0	37	46	-	11.1207	9.73e-05	0.859	GCCACCTGGG
FIGLA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:96874530..96874644,-__1576.1.0.0	37	46	-	11.1207	9.73e-05	0.859	GCCACCTGGG
NR2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	22	34	-	10.5306	9.73e-05	0.535	CCTGGGTCAACCG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.1.0	22	34	-	10.5306	9.73e-05	0.535	CCTGGGTCAACCG
NR2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	22	34	-	10.5306	9.73e-05	0.535	CCTGGGTCAACCG
NR2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.0.0	22	34	-	10.5306	9.73e-05	0.535	CCTGGGTCAACCG
ZBTB33	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	17	31	-	9.5	9.73e-05	0.132	CTCCCGCGCCGCGTC
ZBTB33	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	17	31	-	9.5	9.73e-05	0.132	CTCCCGCGCCGCGTC
ZBTB33	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	84	98	+	9.5	9.73e-05	0.132	CTCCCGCGCCGCGTC
NFE2	FLIPPED__Enhancer.flip.antisense__chr1:236080869..236080983,-__2841.1.0.0	36	46	-	4.57143	9.73e-05	0.409	ATTGACTCATT
NFE2	WILDTYPE__Enhancer.flip.sense__chr1:236080882..236080996,-__2128.1.0.0	49	59	-	4.57143	9.73e-05	0.409	ATTGACTCATT
NFE2	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	18	28	+	4.57143	9.73e-05	0.409	TCTGACTCATC
NFE2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.1.0	24	34	+	4.57143	9.73e-05	0.409	TCTGACTCATC
NFE2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134316577..134316691,+__1616.1.0.0	24	34	+	4.57143	9.73e-05	0.409	TCTGACTCATC
NFE2	FLIPPED__Enhancer.flip.antisense__chr1:236080882..236080996,+__2557.1.0.0	56	66	+	4.57143	9.73e-05	0.409	ATTGACTCATT
NFE2	WILDTYPE__Enhancer.flip.sense__chr1:236080869..236080983,+__1835.1.0.0	69	79	+	4.57143	9.73e-05	0.409	ATTGACTCATT
Esrra	WILDTYPE__mrna.noflip.NA__chr2:73298418..73298532,-__1063.1.0.0	93	103	+	6.34545	9.73e-05	1	GTCAAGGTCCC
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	20	31	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	20	31	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	59	70	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	59	70	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	59	70	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	59	70	-	9.95455	9.73e-05	0.111	CCGCTTCCGCTT
HINFP	WILDTYPE__mrna.noflip.NA__chr19:4791666..4791780,+__1373.1.0.0	103	114	-	9.95455	9.73e-05	0.111	CACCGTCCCCCT
POU4F1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	43	56	+	10.2992	9.73e-05	1	CGTCATAATTAATT
POU4F1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	43	56	+	10.2992	9.73e-05	1	CGTCATAATTAATT
POU4F1	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	59	72	-	10.2992	9.73e-05	1	CGTCATAATTAATT
XBP1	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	27	40	+	8.94231	9.73e-05	0.529	CAGGTTACGTCAGC
XBP1	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	47	-	8.94231	9.73e-05	0.529	CAGGTTACGTCAGC
XBP1	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	68	81	+	8.94231	9.73e-05	0.529	CAGGTTACGTCAGC
XBP1	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	88	-	8.94231	9.73e-05	0.529	CAGGTTACGTCAGC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:45228582..45228696,-__2071.1.2.1	63	73	-	10.2182	9.73e-05	0.0725	AGCTCGAGGCG
ELF4	WILDTYPE__mrna.flip.sense__chr12:47610247..47610361,+__1155.1.0.0	25	36	+	8.18033	9.73e-05	0.131	CCACCGGAAATG
ELF4	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	95	106	+	8.18033	9.73e-05	0.131	CCACCGGAAATG
ELF4	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	9	20	-	8.18033	9.73e-05	0.131	CCACCGGAAATG
ELF4	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	55	66	-	8.18033	9.73e-05	0.131	ATCCCAGAAGTG
ELF4	FLIPPED__mrna.flip.antisense__chr12:47610247..47610361,-__2777.1.0.0	79	90	-	8.18033	9.73e-05	0.131	CCACCGGAAATG
DBP	WILDTYPE__Antisense.noflip.NA__chr3:156892962..156893076,+__563.1.0.0	25	36	-	10.5849	9.73e-05	1	GCTTACGTCACA
DBP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.0.0	29	40	-	10.5849	9.73e-05	1	CATTACACAATC
DBP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858465..171858579,+__1800.1.1.0	29	40	-	10.5849	9.73e-05	1	CATTACACAATC
DBP	WILDTYPE__Antisense.noflip.NA__chr3:156892932..156893046,+__562.1.0.0	55	66	-	10.5849	9.73e-05	1	GCTTACGTCACA
DBP	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.1.0	39	50	+	10.5849	9.73e-05	1	CATTACACAATC
DBP	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:171858429..171858543,-__2093.1.0.0	39	50	+	10.5849	9.73e-05	1	CATTACACAATC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.0.0	15	28	+	4.44898	9.73e-05	0.0785	AAGGGGGAAGGGGG
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.1	15	28	+	4.44898	9.73e-05	0.0785	AAGGGGGAAGGGGG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:90744482..90744596,+__1374.1.1.0	15	28	+	4.44898	9.73e-05	0.0785	AAGGGGGAAGGGGG
INSM1	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	32	43	-	8.73469	9.73e-05	0.207	GGTCCGGGGGCG
Foxa2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.1.0	8	19	+	10.62	9.73e-05	1	TGTTTGCAGAGC
Foxa2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:76334724..76334838,+__1491.1.0.0	8	19	+	10.62	9.73e-05	1	TGTTTGCAGAGC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574426..53574540,+__1485.1.1.0	62	81	-	2.50459	9.73e-05	0.0766	ACAAACACCAACCCCGGTCC
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:53574395..53574509,-__1484.1.1.0	3	22	+	2.50459	9.73e-05	0.0766	ACAAACACCAACCCCGGTCC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.0.0	14	31	-	-16.2368	9.73e-05	0.0565	GCGAAGGAGGCCGGCAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:89102065..89102179,-__141.1.1.0	14	31	-	-16.2368	9.73e-05	0.0565	GCGAAGGAGGCCGGCAGG
CREB3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	70	83	-	8.85714	9.73e-05	0.317	CTGTGACGTCGCCG
CREB3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	70	83	-	8.85714	9.73e-05	0.317	CTGTGACGTCGCCG
ESR1	WILDTYPE__Antisense.noflip.NA__chr2:74612556..74612670,+__446.1.0.0	26	42	+	-1.83333	9.73e-05	0.514	CAGGGAACCCTGAGCCT
IRF9	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.1.0	16	30	+	-4.25455	9.74e-05	0.734	CAGGAAACAGCAACC
IRF9	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:38710496..38710610,+__1482.1.3.1	16	30	+	-4.25455	9.74e-05	0.734	CAGGAAACAGCAACC
IRF9	WILDTYPE__mrna.noflip.NA__chr1:220445709..220445823,-__966.1.0.0	17	31	-	-4.25455	9.74e-05	0.734	AACCAAACCGGAAGC
IRF9	WILDTYPE__Enhancer.noflip.NA__chr9:90326878..90326992,-__2220.1.0.0	38	52	-	-4.25455	9.74e-05	0.734	ATCACAACCAAAAGT
REST	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.1.0	69	89	-	4.10204	9.74e-05	0.252	GCGAGAGCTTAGGAGAGCGCT
REST	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:153839139..153839253,+__1192.1.0.0	69	89	-	4.10204	9.74e-05	0.252	GCGAGAGCTTAGGAGAGCGCT
REST	FLIPPED__mrna.flip.antisense__chr3:153839139..153839253,-__2792.1.0.0	26	46	+	4.10204	9.74e-05	0.252	GCGAGAGCTTAGGAGAGCGCT
YY1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:20811533..20811647,-__282.1.2.0	62	73	-	9.80769	9.74e-05	0.389	AAAAATGGTCTC
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	19	26	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	19	26	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	42	49	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	42	49	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	42	49	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	45	52	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.0.0	42	49	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	42	49	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	42	49	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	52	59	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	52	59	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	45	52	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.0.0	52	59	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:38033976..38034090,-__1696.1.1.0	52	59	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	106	113	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	106	113	+	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.0.0	106	113	-	11.7541	9.74e-05	0.345	ACACGTGT
Id2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:4458644..4458758,-__1394.1.1.0	106	113	-	11.7541	9.74e-05	0.345	ACACGTGT
Pou5f1::Sox2	WILDTYPE__mrna.noflip.NA__chr12:4714071..4714185,+__1359.1.0.0	79	93	+	9.78226	9.74e-05	1	CATTGACATGTGGAG
BHLHE41	FLIPPED__Lincrna.flip.antisense__chr17:13972761..13972875,+__2373.1.0.0	105	114	+	7.15385	9.74e-05	0.235	GTCCCGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.2.0	1	10	-	7.15385	9.74e-05	0.235	GTCCCGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.1.0	1	10	-	7.15385	9.74e-05	0.235	GTCCCGTGAG
BHLHE41	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.0.0	1	10	-	7.15385	9.74e-05	0.235	GTCCCGTGAG
BHLHE41	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.1	1	10	-	7.15385	9.74e-05	0.235	GTCCCGTGAG
BHLHE41	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr17:13972761..13972875,-__350.1.3.0	1	10	-	7.15385	9.74e-05	0.235	GTCCCGTGAG
HES5	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	5	16	-	1.05172	9.74e-05	0.298	CGCCACGCGGCC
GBX1	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	11.3134	9.74e-05	1	CCTAATTAGA
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	25	34	-	10.5488	9.74e-05	0.472	GTCACTCCAC
SREBF1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	-	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE__Antisense.noflip.NA__chr1:110881743..110881857,-__4.1.0.0	33	42	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE__mrna.noflip.NA__chr19:4007669..4007783,+__1248.1.0.0	36	45	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	37	46	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	37	46	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	48	57	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	48	57	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE__mrna.noflip.NA__chr16:69796155..69796269,+__1305.1.0.0	59	68	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	77	86	+	10.5488	9.74e-05	0.472	GTCACGTGAC
SREBF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	77	86	+	10.5488	9.74e-05	0.472	GTCACGTGAC
HESX1	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	80	89	+	11.1455	9.74e-05	1	ATTAATTGAC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr17:44270886..44271000,+__362.1.0.0	39	51	+	9.36066	9.74e-05	0.0589	CGCCCCCGCGGGC
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	41	53	+	9.36066	9.74e-05	0.0589	CCCCTGAAGGGCA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.0.0	41	53	+	9.36066	9.74e-05	0.0589	CCCCTGAAGGGCA
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr17:17743431..17743545,+__2578.1.0.0	69	81	+	9.36066	9.74e-05	0.0589	CGCCCCCGCGGGC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	98	110	+	9.36066	9.74e-05	0.0589	CCCCTGAAGGGCA
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	5	17	-	9.36066	9.74e-05	0.0589	CCCCTGAAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	22	-	9.36066	9.74e-05	0.0589	TGCCGGGAAGGCC
TFAP2A(var.3)	WILDTYPE__Enhancer.flip.sense__chr17:17743431..17743545,-__2169.1.0.0	34	46	-	9.36066	9.74e-05	0.0589	CGCCCCCGCGGGC
TFAP2A(var.3)	FLIPPED__Enhancer.flip.antisense__chr14:102414536..102414650,-__2855.1.0.0	62	74	-	9.36066	9.74e-05	0.0589	CCCCTGAAGGGCA
RELA	WILDTYPE__Enhancer.noflip.NA__chr10:95197193..95197307,-__2045.1.0.0	47	56	+	8.43878	9.74e-05	0.281	AGGAATTTCC
Nfe2l2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	29	43	-	8.93939	9.74e-05	0.37	AGAGTTGACACAGCA
ETV2	WILDTYPE__Lincrna.noflip.NA__chr2:181988577..181988691,+__415.1.0.0	36	46	+	9.47541	9.74e-05	0.191	CACAGGAAACC
PKNOX1	WILDTYPE__mrna.noflip.NA__chr5:173472643..173472757,+__1258.1.0.0	21	32	+	1.14286	9.74e-05	1	AGGCAGCTGCCA
PKNOX1	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	21	32	-	1.14286	9.74e-05	1	AGGCAGCTGCCA
TBX2	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	82	92	-	10.7091	9.74e-05	1	TAGGTGAGAAT
TBX2	WILDTYPE__mrna.noflip.NA__chr11:34535268..34535382,-__984.1.0.0	37	47	+	10.7091	9.74e-05	1	TAGGTGTCACT
MYF6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	34	+	9.66667	9.74e-05	1	GCCAGCTGTC
MYF6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	33	-	9.66667	9.74e-05	1	GCCAGCTGTC
MYF6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	33	-	9.66667	9.74e-05	1	GCCAGCTGTC
MYF6	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	38	-	9.66667	9.74e-05	1	GCCAGCTGTC
EVX1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.1.0	17	26	-	10.1132	9.74e-05	1	AATAATTACC
EVX1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:24673490..24673604,-__2148.1.0.0	17	26	-	10.1132	9.74e-05	1	AATAATTACC
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.1.0	29	40	+	10.6727	9.74e-05	0.0584	CGCCCTCAGGTG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499697..238499811,-__1568.1.0.0	29	40	+	10.6727	9.74e-05	0.0584	CGCCCTCAGGTG
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.0.0	66	77	+	10.6727	9.74e-05	0.0584	TCCCTCCCGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:27224936..27225050,+__801.1.1.0	66	77	+	10.6727	9.74e-05	0.0584	TCCCTCCCGGCT
SP4	WILDTYPE__Lincrna.noflip.NA__chr12:30948553..30948667,+__227.1.0.0	59	75	-	2.43636	9.74e-05	0.0362	TCAGCCACGTCCCCTGC
Pparg::Rxra	FLIPPED__mrna.flip.antisense__chr17:7211612..7211726,-__2749.1.0.0	77	91	+	10.2703	9.75e-05	0.19	TGGGGGGAGGGGTCC
Pparg::Rxra	WILDTYPE__mrna.flip.sense__chr17:7211612..7211726,+__1041.1.0.0	24	38	-	10.2703	9.75e-05	0.19	TGGGGGGAGGGGTCC
RXRG	WILDTYPE__Antisense.noflip.NA__chr20:305877..305991,-__468.1.0.0	87	100	+	0.319149	9.75e-05	0.54	TAGGTTAGGGGTTG
Alx4	WILDTYPE__mrna.noflip.NA__chr12:15114643..15114757,-__998.1.0.0	77	93	+	10.3766	9.75e-05	1	GCCATTAATTGACAAGA
NFKB1	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	58	70	-	0.714286	9.75e-05	0.272	AGGGGAAAGCCCC
HLF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	46	57	-	11.0339	9.75e-05	1	CATTATGCAATG
HLF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	46	57	-	11.0339	9.75e-05	1	CATTATGCAATG
EGR1	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	48	61	-	9.46154	9.75e-05	0.032	GCGCAGCCTCCGCT
DBP	WILDTYPE__mrna.flip.sense__chr8:90769909..90770023,+__1229.1.0.0	34	45	-	10.566	9.75e-05	1	GGTTACGTCAGC
DBP	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	75	86	-	10.566	9.75e-05	1	GGTTACGTCAGC
DBP	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	29	40	+	10.566	9.75e-05	1	GGTTACGTCAGC
DBP	FLIPPED__mrna.flip.antisense__chr8:90769909..90770023,-__2808.1.0.0	70	81	+	10.566	9.75e-05	1	GGTTACGTCAGC
ETS1	FLIPPED__mrna.flip.antisense__chr12:51632547..51632661,-__2744.1.0.0	103	112	+	10.7759	9.75e-05	0.121	GCCGGAAACT
ETS1	WILDTYPE__mrna.flip.sense__chr12:51632547..51632661,+__1002.1.0.0	3	12	-	10.7759	9.75e-05	0.121	GCCGGAAACT
PAX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.1	87	105	-	9.85484	9.75e-05	0.158	AGGGGCAGCCCAGCAGGGG
PAX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:26223078..26223192,+__1345.1.2.0	87	105	-	9.85484	9.75e-05	0.158	AGGGGCAGCCCAGCAGGGG
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	38	52	+	9.56897	9.75e-05	0.0196	GTTCCTCCCTCAGGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	33	47	-	9.56897	9.75e-05	0.0196	CCCCCTCCCCGCAGA
SP2	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	41	55	-	9.56897	9.75e-05	0.0196	GTTCCTCCCTCAGGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	44	58	-	9.56897	9.75e-05	0.0196	AGCCCTCCCTCGGGG
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.0.0	44	58	-	9.56897	9.75e-05	0.0196	AGCCCTCCCTCGGGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	59	73	-	9.56897	9.75e-05	0.0196	GCTCCGCTCTCCCTC
Myod1	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	5	17	+	10.7959	9.75e-05	0.202	GGCACCTGGCGCC
Myod1	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	49	61	-	10.7959	9.75e-05	0.202	CACAGCTGTCTAG
Myod1	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	98	110	-	10.7959	9.75e-05	0.202	GGCACCTGGCGCC
HSF4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.1.0	44	56	-	10.0854	9.75e-05	1	CGCGCGAACATTC
HSF4	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	44	56	-	10.0854	9.75e-05	1	CGCGCGAACATTC
Ascl2	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	33	42	-	10.2714	9.75e-05	0.254	GGCTGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr7:110174739..110174853,-__767.1.0.0	40	49	-	10.2714	9.75e-05	0.254	GGCATCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.0.0	48	57	-	10.2714	9.75e-05	0.254	GGCATCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr6:11299464..11299578,-__2264.1.1.0	48	57	-	10.2714	9.75e-05	0.254	GGCATCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	95	104	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	95	104	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	95	104	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	95	104	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.0.0	103	112	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.0	103	112	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.2.1	103	112	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:124196820..124196934,+__1479.1.1.0	103	112	-	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	11	20	+	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE__Lincrna.noflip.NA__chr15:80544520..80544634,-__333.1.0.0	33	42	+	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	FLIPPED__Enhancer.flip.antisense__chr6:11299464..11299578,+__2609.1.0.0	58	67	+	10.2714	9.75e-05	0.254	GGCATCTGCC
Ascl2	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	73	82	+	10.2714	9.75e-05	0.254	GGCTGCTGCC
Ascl2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.0.0	81	90	+	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.1	81	90	+	10.2714	9.75e-05	0.254	TCCAGCTGCC
Ascl2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145159037..145159151,-__1691.1.1.0	81	90	+	10.2714	9.75e-05	0.254	TCCAGCTGCC
TCF3	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	+	11.2885	9.75e-05	0.404	CGCAGCTGCG
TCF3	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	25	34	-	11.2885	9.75e-05	0.404	CGCAGCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	+	11.2885	9.75e-05	0.404	CGCAGCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:140134851..140134965,-__2218.1.0.0	80	89	-	11.2885	9.75e-05	0.404	CGCAGCTGCG
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	25	36	+	2	9.75e-05	0.224	GGGCACGTGGGA
HES7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.0.0	43	54	-	2	9.75e-05	0.224	GGGCACGTGGGA
Nr1h3::Rxra	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	89	107	+	9.96774	9.75e-05	0.724	TGCCCTGCTCTGGCCCGTG
ETV6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.1.0	83	92	-	10.6346	9.75e-05	0.13	CGCGGAAGGA
ETV6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:144363753..144363867,-__843.1.0.0	83	92	-	10.6346	9.75e-05	0.13	CGCGGAAGGA
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.1.0	75	87	+	8.88525	9.75e-05	0.0653	ACCCCGAGAGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32870634..32870748,+__1602.1.0.0	75	87	+	8.88525	9.75e-05	0.0653	ACCCCGAGAGGCC
TFAP2C	WILDTYPE__mrna.noflip.NA__chr15:66994644..66994758,+__1026.1.0.0	93	104	+	10.6327	9.76e-05	0.0877	ACCCCGGGGCCA
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.0	6	17	-	10.6327	9.76e-05	0.0877	CGCCGCAGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.1.0	6	17	-	10.6327	9.76e-05	0.0877	CGCCGCAGGGCC
TFAP2C	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.2.1	6	17	-	10.6327	9.76e-05	0.0877	CGCCGCAGGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:143247956..143248070,+__1812.1.0.0	6	17	-	10.6327	9.76e-05	0.0877	CGCCGCAGGGCC
EGR3	WILDTYPE__mrna.noflip.NA__chr11:67188591..67188705,-__1232.1.0.0	37	51	+	5.2069	9.76e-05	0.0419	CGCCTCCCACACGAA
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	25	39	-	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	25	39	-	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	25	39	-	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	25	39	-	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	86	100	+	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	86	100	+	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	86	100	+	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
EGR3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	86	100	+	5.2069	9.76e-05	0.0419	CTCCACCCCCTCCTT
ETV4	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	11	9.76e-05	0.139	GACGGAAGTG
ETV4	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	11	9.76e-05	0.139	GACGGAAGTG
NFYA	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	24	41	+	8.23171	9.76e-05	0.228	ACCCACCTGACTGGCGGG
NFYA	WILDTYPE__Lincrna.noflip.NA__chr9:117160717..117160831,-__887.1.0.0	41	58	+	8.23171	9.76e-05	0.228	CGCGCCCGGATTGGAGGC
NFYA	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	74	91	-	8.23171	9.76e-05	0.228	ACCCACCTGACTGGCGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	8	21	-	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	8	21	-	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	75	88	-	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	27	40	+	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	27	40	+	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	94	107	+	4.43878	9.76e-05	0.0785	GGGTCGCGCGGGGA
FOXB1	FLIPPED__Enhancer.flip.antisense__chr3:5028657..5028771,+__2592.1.0.0	5	15	-	10.5385	9.76e-05	1	TGTGTCAACAG
FOXB1	WILDTYPE__Enhancer.flip.sense__chr3:5028632..5028746,+__1902.1.0.0	30	40	-	10.5385	9.76e-05	1	TGTGTCAACAG
FOXB1	FLIPPED__Enhancer.flip.antisense__chr3:5028632..5028746,-__2876.1.0.0	75	85	+	10.5385	9.76e-05	1	TGTGTCAACAG
FOXB1	WILDTYPE__Enhancer.flip.sense__chr3:5028657..5028771,-__2195.1.0.0	100	110	+	10.5385	9.76e-05	1	TGTGTCAACAG
Klf4	WILDTYPE__mrna.noflip.NA__chr3:63953404..63953518,+__1079.1.0.0	4	13	-	9.97959	9.76e-05	0.0307	GGGGTGGAGT
Klf4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	22	31	+	9.97959	9.76e-05	0.0307	GGGGTGGAGT
Klf4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	22	31	+	9.97959	9.76e-05	0.0307	GGGGTGGAGT
Gfi1b	WILDTYPE__Enhancer.flip.sense__chr20:62495601..62495715,+__1893.1.0.0	5	15	+	10.5345	9.76e-05	0.617	TAACCTCAGCT
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.0.0	44	54	-	10.5345	9.76e-05	0.617	TAATCACTGCG
Gfi1b	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.1.1	44	54	-	10.5345	9.76e-05	0.617	TAATCACTGCG
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:102706915..102707029,-__1492.1.1.0	44	54	-	10.5345	9.76e-05	0.617	TAATCACTGCG
Gfi1b	FLIPPED__Enhancer.flip.antisense__chr20:62495601..62495715,-__2870.1.0.0	100	110	-	10.5345	9.76e-05	0.617	TAACCTCAGCT
Gabpa	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	3	13	+	10.1475	9.76e-05	0.0794	CCGGAAGGGTG
Gabpa	WILDTYPE__Enhancer.flip.sense__chr17:7747246..7747360,+__1881.1.0.0	25	35	+	10.1475	9.76e-05	0.0794	GAGGAAGTGAA
Gabpa	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	51	61	-	10.1475	9.76e-05	0.0794	CAGGAAGTTAC
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	62	72	-	10.1475	9.76e-05	0.0794	GAGGAAGTGAA
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	62	72	-	10.1475	9.76e-05	0.0794	GAGGAAGTGAA
Gabpa	FLIPPED__Enhancer.flip.antisense__chr17:7747246..7747360,-__2865.1.0.0	80	90	-	10.1475	9.76e-05	0.0794	GAGGAAGTGAA
SP8	WILDTYPE__Lincrna.noflip.NA__chr7:131582325..131582439,+__783.1.0.0	6	17	-	10.1842	9.76e-05	0.0399	GCCCCACCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	7	18	-	10.1842	9.76e-05	0.0399	CCCCCCCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	7	18	-	10.1842	9.76e-05	0.0399	CCCCCCCCCAGC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	9	20	-	10.1842	9.76e-05	0.0399	GAACCGCCCCTC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	9	20	-	10.1842	9.76e-05	0.0399	GAACCGCCCCTC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	28	39	-	10.1842	9.76e-05	0.0399	GCCCCACCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	28	39	-	10.1842	9.76e-05	0.0399	GCCCCACCTCCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr9:92316487..92316601,+__915.1.0.0	39	50	-	10.1842	9.76e-05	0.0399	TCCACCCCCAGC
SP8	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	68	79	-	10.1842	9.76e-05	0.0399	GCCTCTCCCACC
SP8	WILDTYPE__Antisense.noflip.NA__chr12:53448185..53448299,-__236.1.0.0	12	23	+	10.1842	9.76e-05	0.0399	GCCTCGCCCATC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	8	27	+	2.49541	9.76e-05	0.0767	CCGCCCCCGACACACCTCCA
RREB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	8	27	+	2.49541	9.76e-05	0.0767	CCGCCCCCGACACACCTCCA
ZIC3	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	37	51	-	7.12857	9.76e-05	0.129	GGAACCCTGTGGTGC
EGR4	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	2	17	+	9.56364	9.76e-05	0.0418	CCCCTCCCGCGCGGTG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	14	29	+	9.56364	9.76e-05	0.0418	GACAGCCCCCGCGCAT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101929987..101930101,-__2312.1.0.0	15	30	+	9.56364	9.76e-05	0.0418	GCCCCCCCTCGCGCGT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	32	47	+	9.56364	9.76e-05	0.0418	CCCATCCCACGCAGAT
EGR4	WILDTYPE__Enhancer.noflip.NA__chr7:101930046..101930160,+__2019.1.0.0	26	41	-	9.56364	9.76e-05	0.0418	GCCCCCCCTCGCGCGT
EGR4	WILDTYPE__mrna.flip.sense__chr4:53525425..53525539,-__1201.1.0.0	46	61	+	9.56364	9.76e-05	0.0418	CCCCGCCCTCCCCGCG
EGR4	FLIPPED__Lincrna.flip.antisense__chr6:2245916..2246030,-__2714.1.0.0	47	62	+	9.56364	9.76e-05	0.0418	CCCCTCCCGCGCGGTG
EGR4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.0.0	51	66	-	9.56364	9.76e-05	0.0418	GGCCGCCCCCTCCCTC
EGR4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.0	51	66	-	9.56364	9.76e-05	0.0418	GGCCGCCCCCTCCCTC
EGR4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:20004220..20004334,-__1596.1.1.1	51	66	-	9.56364	9.76e-05	0.0418	GGCCGCCCCCTCCCTC
EGR4	WILDTYPE__Lincrna.flip.sense__chr6:2245916..2246030,+__742.1.0.0	53	68	-	9.56364	9.76e-05	0.0418	CCCCTCCCGCGCGGTG
EGR4	FLIPPED__mrna.flip.antisense__chr4:53525425..53525539,+__2510.1.0.0	54	69	-	9.56364	9.76e-05	0.0418	CCCCGCCCTCCCCGCG
EGR4	WILDTYPE__Antisense.noflip.NA__chr7:30028192..30028306,+__805.1.0.0	80	95	+	9.56364	9.76e-05	0.0418	ACACACGCACGCACCC
EGR4	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	83	98	+	9.56364	9.76e-05	0.0418	GACAGCCCCCGCGCAT
EGR4	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	98	113	-	9.56364	9.76e-05	0.0418	CCCCTCCCGCGCGGTG
POU4F2	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	47	62	-	6.16364	9.76e-05	1	GGGCATTTTTAAGCAG
ESX1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	12	21	-	10.0417	9.76e-05	1	GCCAATTACA
ESX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.1.0	42	51	-	10.0417	9.76e-05	1	GCCAATTACG
ESX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:30294166..30294280,+__1215.1.0.0	42	51	-	10.0417	9.76e-05	1	GCCAATTACG
ESX1	FLIPPED__Antisense.flip.antisense__chr6:30294128..30294242,+__2417.1.0.0	80	89	-	10.0417	9.76e-05	1	GCCAATTACG
ESX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	-	10.0417	9.76e-05	1	ACTAATTAGA
ESX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.1.0	5	14	+	10.0417	9.76e-05	1	GCCAATTACA
ESX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:151763230..151763344,+__21.1.0.0	5	14	+	10.0417	9.76e-05	1	GCCAATTACA
ESX1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.0.0	26	35	+	10.0417	9.76e-05	1	GCCAATTACG
ESX1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30294128..30294242,-__747.1.1.0	26	35	+	10.0417	9.76e-05	1	GCCAATTACG
ESX1	FLIPPED__mrna.flip.antisense__chr6:30294166..30294280,-__2799.1.0.0	64	73	+	10.0417	9.76e-05	1	GCCAATTACG
FOXP1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:198625715..198625829,+__1831.1.1.0	53	67	-	10.3239	9.76e-05	0.405	CAAAAAAAAAAAAAC
SMAD2::SMAD3::SMAD4	WILDTYPE__mrna.noflip.NA__chr13:20805051..20805165,-__1009.1.0.0	40	52	+	10.0492	9.76e-05	0.359	TAGCCTGTCACAT
JUND(var.2)	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	30	44	+	9.53191	9.76e-05	0.376	AGATATGATGTAAGT
JUND(var.2)	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	71	85	-	9.53191	9.76e-05	0.376	AGATATGATGTAAGT
JUND(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.1.0	96	110	+	9.53191	9.76e-05	0.376	GCCAATGAGGCCAGC
JUND(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:96001053..96001167,-__309.1.0.0	96	110	+	9.53191	9.76e-05	0.376	GCCAATGAGGCCAGC
Zfx	WILDTYPE__mrna.noflip.NA__chr4:159644509..159644623,-__1352.1.0.0	39	52	-	9.87879	9.76e-05	0.0694	GAAGCCATGGCCTG
Zfx	WILDTYPE__Lincrna.noflip.NA__chr5:169739632..169739746,-__673.1.0.0	62	75	+	9.87879	9.76e-05	0.0694	GCTGCAGCGGCCTC
Zfx	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	62	75	+	9.87879	9.76e-05	0.0694	GGGGCCGGGGCCCC
NRF1	WILDTYPE__mrna.noflip.NA__chr16:451865..451979,+__1261.1.0.0	33	43	-	9.09091	9.77e-05	0.0256	GACCCGGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr18:47721341..47721455,-__1044.1.0.0	38	48	-	9.09091	9.77e-05	0.0256	GAGGCCGCGCC
NRF1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	43	53	-	9.09091	9.77e-05	0.0256	GACCCGGCGCG
NRF1	FLIPPED__mrna.flip.antisense__chr18:47721341..47721455,+__2456.1.0.0	67	77	+	9.09091	9.77e-05	0.0256	GAGGCCGCGCC
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	79	95	-	-4.01515	9.77e-05	0.861	AGGCCGAGCGGGGCTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	79	95	-	-4.01515	9.77e-05	0.861	AGGCCGAGCGGGGCTCA
ESR1	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	24	40	-	-1.84848	9.77e-05	0.514	ACGGTAAAACTGAGCCT
ARNT::HIF1A	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	26	33	-	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.0	41	48	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.0.0	41	48	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.1.0	41	48	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:60028845..60028959,+__1447.1.2.1	41	48	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	82	89	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	82	89	+	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.0.0	94	101	-	11.0789	9.77e-05	0.419	ACACGTGC
ARNT::HIF1A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:118095758..118095872,-__980.1.1.0	94	101	-	11.0789	9.77e-05	0.419	ACACGTGC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.1.0	20	30	+	9.77586	9.77e-05	0.0272	CCCCAACCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.0.0	20	30	+	9.77586	9.77e-05	0.0272	CCCCAACCCCC
KLF16	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.1	20	30	+	9.77586	9.77e-05	0.0272	CCCCAACCCCC
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:45956777..45956891,-__1277.1.2.0	20	30	+	9.77586	9.77e-05	0.0272	CCCCAACCCCC
KLF16	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:22351918..22352032,+__53.1.1.0	28	38	+	9.77586	9.77e-05	0.0272	GTCCCACCCCT
KLF16	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	33	43	+	9.77586	9.77e-05	0.0272	CCCACACCCCA
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	33	43	+	9.77586	9.77e-05	0.0272	CCCACACCCCA
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	31	41	-	9.77586	9.77e-05	0.0272	GCCACGCCTTC
KLF16	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	43	53	+	9.77586	9.77e-05	0.0272	GTCCCACCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	43	53	+	9.77586	9.77e-05	0.0272	GTCCCACCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr8:13462090..13462204,-__840.1.0.0	50	60	+	9.77586	9.77e-05	0.0272	GTCCCACCCCT
KLF16	WILDTYPE__Lincrna.noflip.NA__chr15:74753560..74753674,+__331.1.0.0	71	81	-	9.77586	9.77e-05	0.0272	GCCACGCCTTC
TFAP4	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	7	16	+	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	25	34	+	9.87273	9.77e-05	0.655	GCCAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.1.0	24	33	-	9.87273	9.77e-05	0.655	GCCAGCTGTC
TFAP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:165697165..165697279,+__1719.1.0.0	24	33	-	9.87273	9.77e-05	0.655	GCCAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	29	38	-	9.87273	9.77e-05	0.655	GCCAGCTGTC
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
TFAP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	99	108	-	9.87273	9.77e-05	0.655	CTCAGCTGCT
E2F7	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:111580462..111580576,+__1648.1.0.0	94	107	+	-6.27869	9.77e-05	1	TTTTGCCACGAACA
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.1	10	24	-	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.1.0	10	24	-	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.2.0	10	24	-	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.0.0	10	24	-	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731404..30731518,+__1976.1.3.0	10	24	-	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	18	32	+	8.48571	9.77e-05	0.122	CAGGGTGGGAGGGAG
NR2C2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	18	32	+	8.48571	9.77e-05	0.122	CAGGGTGGGAGGGAG
NR2C2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.0.0	53	67	+	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.1.0	53	67	+	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.0	53	67	+	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30731366..30731480,-__2269.1.2.1	53	67	+	8.48571	9.77e-05	0.122	GTAGGTGAAAGTTCT
NR2C2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	55	69	+	8.48571	9.77e-05	0.122	GGAGTGCGGAGGGGG
NR2C2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	55	69	+	8.48571	9.77e-05	0.122	GGAGTGCGGAGGGGG
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	26	37	+	-1.32692	9.77e-05	0.932	TGACAAATGTGA
TGIF1	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	56	67	-	-1.32692	9.77e-05	0.932	TGACAAATGTGA
Creb3l2	FLIPPED__Lincrna.flip.antisense__chr7:23145264..23145378,+__2426.1.0.0	57	65	-	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE__Antisense.noflip.NA__chr3:5228988..5229102,-__585.1.0.0	68	76	-	10.7865	9.77e-05	0.328	GTCACGTCT
Creb3l2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.0.0	70	78	-	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.0	70	78	-	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.1.0	70	78	-	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:96969635..96969749,+__1217.1.2.1	70	78	-	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	103	111	-	10.7865	9.77e-05	0.328	TTCACGTGG
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr4:134070233..134070347,-__606.1.0.0	15	23	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.0.0	19	27	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:116594305..116594419,-__769.1.1.0	19	27	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE__mrna.noflip.NA__chr12:57623806..57623920,+__1004.1.0.0	23	31	+	10.7865	9.77e-05	0.328	TTCACGTGG
Creb3l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.0.0	31	39	+	10.7865	9.77e-05	0.328	GTCACGTCT
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:165798062..165798176,+__615.1.2.0	31	39	+	10.7865	9.77e-05	0.328	GTCACGTCT
Creb3l2	FLIPPED__mrna.flip.antisense__chr6:96969635..96969749,-__2801.1.0.0	37	45	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE__Lincrna.noflip.NA__chr5:173763185..173763299,+__675.1.0.0	37	45	+	10.7865	9.77e-05	0.328	GTCACGTCT
Creb3l2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.1	50	58	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.2.0	50	58	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.1.0	50	58	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr7:23145264..23145378,-__795.1.0.0	50	58	+	10.7865	9.77e-05	0.328	GACACGTCA
Creb3l2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.0.0	52	60	+	10.7865	9.77e-05	0.328	TTCACGTGG
Creb3l2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:30601660..30601774,+__853.1.1.0	52	60	+	10.7865	9.77e-05	0.328	TTCACGTGG
Creb3l2	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	90	98	+	10.7865	9.77e-05	0.328	GACACGTCA
E2F4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	78	88	-	9.84483	9.77e-05	0.0529	GGGCGAGAGGC
E2F4	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	78	88	-	9.84483	9.77e-05	0.0529	GGGCGAGAGGC
E2F4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	78	88	-	9.84483	9.77e-05	0.0529	GGGCGAGAGGC
E2F4	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	102	112	-	9.84483	9.77e-05	0.0529	GGGCGAGAGGC
GLIS1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	53	68	+	-11.3846	9.77e-05	0.33	CGGCCCACCTCTATGG
GLIS1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	47	62	-	-11.3846	9.77e-05	0.33	CGGCCCACCTCTATGG
GLIS1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	47	62	-	-11.3846	9.77e-05	0.33	CGGCCCACCTCTATGG
YY1	WILDTYPE__mrna.noflip.NA__chr4:145061836..145061950,-__1082.1.0.0	37	48	+	9.78846	9.77e-05	0.389	GATGATGGCCGC
Myog	WILDTYPE__mrna.noflip.NA__chr2:178129532..178129646,-__1056.1.0.0	11	21	-	10.7551	9.77e-05	0.19	GCCAGCTGGGG
IRF8	WILDTYPE__Enhancer.noflip.NA__chr3:46254854..46254968,-__2095.1.0.0	7	20	-	-4.34545	9.77e-05	0.79	AGGAAATAGAAACT
IRF8	WILDTYPE__Enhancer.noflip.NA__chr3:46254855..46254969,+__1802.1.0.0	94	107	+	-4.34545	9.77e-05	0.79	AGGAAATAGAAACT
ZIC1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.1.0	22	35	+	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
ZIC1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:70244500..70244614,-__195.1.0.0	22	35	+	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
ZIC1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.1.0	13	26	-	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr11:70244567..70244681,+__1152.1.0.0	13	26	-	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
ZIC1	FLIPPED__mrna.flip.antisense__chr6:2245871..2245985,+__2520.1.0.0	13	26	-	5.19149	9.78e-05	0.106	GCAGCCCCGCTGCT
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	48	61	+	5.19149	9.78e-05	0.106	GGCGCCCTGCTCTG
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	48	61	+	5.19149	9.78e-05	0.106	GGCGCCCTGCTCTG
ZIC1	WILDTYPE__Enhancer.noflip.NA__chr14:99736256..99736370,+__1866.1.0.0	60	73	-	5.19149	9.78e-05	0.106	CGCAGCCCGCGGGG
ZIC1	WILDTYPE__mrna.flip.sense__chr6:2245871..2245985,-__1213.1.0.0	89	102	+	5.19149	9.78e-05	0.106	GCAGCCCCGCTGCT
ZIC1	FLIPPED__mrna.flip.antisense__chr11:70244567..70244681,-__2775.1.0.0	89	102	+	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
ZIC1	FLIPPED__Antisense.flip.antisense__chr11:70244500..70244614,+__2348.1.0.0	80	93	-	5.19149	9.78e-05	0.106	CGCCCCCTGCCCCG
E2F1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.1	68	79	-	10.2951	9.78e-05	0.458	GCAGGCGCCCAA
E2F1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.0.0	68	79	-	10.2951	9.78e-05	0.458	GCAGGCGCCCAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.2.0	68	79	-	10.2951	9.78e-05	0.458	GCAGGCGCCCAA
E2F1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41777866..41777980,+__1605.1.1.0	68	79	-	10.2951	9.78e-05	0.458	GCAGGCGCCCAA
ESRRB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	90	100	+	7.46552	9.78e-05	1	CCAAGGGCACA
ESRRB	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	90	100	+	7.46552	9.78e-05	1	CCAAGGGCACA
MAF::NFE2	WILDTYPE__mrna.noflip.NA__chr10:102046079..102046193,-__971.1.0.0	51	65	-	7.65574	9.78e-05	0.544	CTGACACATCAACTC
LIN54	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.0.0	68	76	-	11.3333	9.78e-05	1	TTTTAAATT
LIN54	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:74920389..74920503,+__911.1.1.0	68	76	-	11.3333	9.78e-05	1	TTTTAAATT
LIN54	WILDTYPE__Antisense.noflip.NA__chr3:4793267..4793381,-__583.1.0.0	75	83	-	11.3333	9.78e-05	1	GTTTGAATA
Sox3	WILDTYPE__Lincrna.noflip.NA__chr11:28724067..28724181,+__176.1.0.0	3	12	+	10.8793	9.78e-05	0.674	CTATTGTTTT
NR3C1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	41	57	+	3.85714	9.78e-05	1	GGGCACGCGGAGTCCCG
NR3C1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	41	57	+	3.85714	9.78e-05	1	GGGCACGCGGAGTCCCG
TP73	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30584985..30585099,-__1411.1.0.0	16	33	+	7.53846	9.78e-05	0.744	AGCACGTTTGGGCGCGTT
ELF4	WILDTYPE__Enhancer.flip.sense__chr12:25539117..25539231,-__2149.1.0.0	16	27	+	8.16393	9.78e-05	0.131	GAGCCGGATGTG
ELF4	FLIPPED__Enhancer.flip.antisense__chr12:25539182..25539296,-__2853.1.0.0	81	92	+	8.16393	9.78e-05	0.131	GAGCCGGATGTG
ELF4	WILDTYPE__Enhancer.flip.sense__chr12:25539182..25539296,+__1856.1.0.0	23	34	-	8.16393	9.78e-05	0.131	GAGCCGGATGTG
ELF4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.1	41	52	-	8.16393	9.78e-05	0.131	GGTCCGGAAGTC
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.1.0	41	52	-	8.16393	9.78e-05	0.131	GGTCCGGAAGTC
ELF4	FLIPPED__Enhancer.flip.antisense__chr12:25539117..25539231,+__2569.1.0.0	88	99	-	8.16393	9.78e-05	0.131	GAGCCGGATGTG
T	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	25	40	+	6.88462	9.78e-05	1	TCACACGTAGCGGCCA
Klf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:211556065..211556179,+__50.1.1.0	64	74	-	9.98485	9.78e-05	0.061	GCGCACGCCCA
SP1	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	34	44	+	9.98077	9.78e-05	0.022	GCCCTGCCTCC
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	32	42	-	9.98077	9.78e-05	0.022	CTCCCTCCTAC
SP1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr2:139259230..139259344,-__400.1.0.0	43	53	+	9.98077	9.78e-05	0.022	CTCCCTCCTAC
SP1	FLIPPED__Lincrna.flip.antisense__chr2:139259230..139259344,+__2376.1.0.0	62	72	-	9.98077	9.78e-05	0.022	CTCCCTCCTAC
SP1	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	73	83	+	9.98077	9.78e-05	0.022	CTCCCTCCTAC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	60	72	+	7.22414	9.78e-05	0.197	GAGCCGGAAGCCC
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.3.0	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.0	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
STAT1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
STAT1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.2.0	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
STAT1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.4.1	101	111	-	9.56364	9.78e-05	0.432	GCTCCAGGAAG
EOMES	FLIPPED__Enhancer.flip.antisense__chr14:102414479..102414593,+__2571.1.0.0	57	69	+	10.5122	9.78e-05	1	GAGGTGAGAACGG
EOMES	WILDTYPE__Enhancer.flip.sense__chr14:102414479..102414593,-__2153.1.0.0	46	58	-	10.5122	9.78e-05	1	GAGGTGAGAACGG
TP53	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.0.0	79	96	-	5.46939	9.78e-05	1	AACAAGACAGTGCAAGTG
TP53	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:214161796..214161910,+__1428.1.1.0	79	96	-	5.46939	9.78e-05	1	AACAAGACAGTGCAAGTG
DUX4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr12:92996492..92996606,+__1992.1.0.0	31	41	+	9.89362	9.78e-05	1	AGACCCAATCA
KLF14	WILDTYPE__Lincrna.noflip.NA__chr8:125486770..125486884,-__831.1.0.0	9	22	+	7.7931	9.78e-05	0.042	GTTTCCGCCCACCT
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	24	37	+	7.7931	9.78e-05	0.042	CCCCACCCCCCCCC
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	75	89	+	9.61818	9.78e-05	0.354	AAGAAGTGAGATTGT
PRDM1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	39	53	-	9.61818	9.78e-05	0.354	AAGAAGTGAGATTGT
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	13	23	+	9.54545	9.78e-05	0.257	AGTGAGTCAAG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	13	23	+	9.54545	9.78e-05	0.257	AGTGAGTCAAG
FOSL1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	13	23	+	9.54545	9.78e-05	0.257	AGTGAGTCAAG
FOSL1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	13	23	+	9.54545	9.78e-05	0.257	AGTGAGTCAAG
FOSL1	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	92	102	-	9.54545	9.78e-05	0.257	AGTGAGTCAAG
TFEB	WILDTYPE__Lincrna.noflip.NA__chr1:65533394..65533508,-__86.1.0.0	84	93	+	10.7885	9.78e-05	0.221	ATCACATGGC
INSM1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.0.0	74	85	-	8.71429	9.78e-05	0.207	TGGGAGGGGGCG
INSM1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145752382..145752496,-__1695.1.1.0	74	85	-	8.71429	9.78e-05	0.207	TGGGAGGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:8055678..8055792,-__1531.1.1.0	59	71	+	9.34426	9.78e-05	0.0589	CGCCCGCCCGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	1	13	-	9.34426	9.78e-05	0.0589	TCCCCGGGCGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	1	13	-	9.34426	9.78e-05	0.0589	TCCCCGGGCGGGG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.2.0	68	80	-	9.34426	9.78e-05	0.0589	TGCCTGCCAGGGA
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.0.0	68	80	-	9.34426	9.78e-05	0.0589	TGCCTGCCAGGGA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:18287731..18287845,+__1456.1.1.0	68	80	-	9.34426	9.78e-05	0.0589	TGCCTGCCAGGGA
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.1.0	91	104	-	-0.781818	9.78e-05	0.587	AAAATCAAAGTTCA
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:52201599..52201713,-__2085.1.0.0	91	104	-	-0.781818	9.78e-05	0.587	AAAATCAAAGTTCA
Sox6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr16:66442347..66442461,+__347.1.1.0	53	62	+	10.9143	9.78e-05	0.937	CTTTTGTTTT
Sox6	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	59	68	+	10.9143	9.78e-05	0.937	CTTTTGTTTT
Sox6	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	59	68	+	10.9143	9.78e-05	0.937	CTTTTGTTTT
HOXB2	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.2.1	17	26	+	9.67925	9.78e-05	1	TGTAATTAAG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	92	105	+	10.3462	9.78e-05	0.255	TGCTGCTGAGTCAG
GLIS3	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	13	26	+	2.45455	9.78e-05	0.396	CCCCCCCCGTGTTG
GLIS3	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	13	26	+	2.45455	9.78e-05	0.396	CCCCCCCCGTGTTG
GLIS3	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	89	102	-	2.45455	9.78e-05	0.396	CCCCCCCCGTGTTG
RREB1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	33	52	-	2.48624	9.79e-05	0.0767	CCCCACGTCCCACCCCCCAC
RREB1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	11	30	+	2.48624	9.79e-05	0.0767	ACTCCCCTAACCCCACCCCA
Foxo1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	97	107	+	10.9138	9.79e-05	0.902	TGGTGTTTATA
Foxo1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	97	107	+	10.9138	9.79e-05	0.902	TGGTGTTTATA
Foxo1	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	8	18	-	10.9138	9.79e-05	0.902	TGGTGTTTATA
ZBTB7A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.1.0	32	43	+	10.1857	9.79e-05	0.238	CCCACCCACCGG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr7:2595316..2595430,-__1677.1.0.0	32	43	+	10.1857	9.79e-05	0.238	CCCACCCACCGG
NFE2	FLIPPED__Enhancer.flip.antisense__chr16:31363439..31363553,-__2859.1.0.0	40	50	-	4.55102	9.79e-05	0.409	CATGATTCACT
NFE2	WILDTYPE__Enhancer.flip.sense__chr16:31363476..31363590,-__2164.1.0.0	77	87	-	4.55102	9.79e-05	0.409	CATGATTCACT
NFE2	FLIPPED__Enhancer.flip.antisense__chr16:31363476..31363590,+__2575.1.0.0	28	38	+	4.55102	9.79e-05	0.409	CATGATTCACT
NFE2	WILDTYPE__Enhancer.flip.sense__chr16:31363439..31363553,+__1871.1.0.0	65	75	+	4.55102	9.79e-05	0.409	CATGATTCACT
Hes1	WILDTYPE__Lincrna.noflip.NA__chr9:132099122..132099236,+__897.1.0.0	35	44	+	9.65734	9.79e-05	0.126	CACACGCGGC
SP3	WILDTYPE__Enhancer.noflip.NA__chr17:46102468..46102582,-__2064.1.0.0	12	22	+	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	99	109	+	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	6	16	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.1.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	29	39	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	51	61	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	62	72	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	62	72	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	71	81	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	71	81	-	10.4959	9.79e-05	0.0288	ACTCCGCCCCC
ERF	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	91	100	+	10.3714	9.79e-05	0.136	ACAGGAACTG
TBX20	FLIPPED__mrna.flip.antisense__chr14:35451808..35451922,-__2778.1.0.0	25	35	+	10	9.79e-05	1	GAGGTGTGACT
TBX20	WILDTYPE__mrna.flip.sense__chr14:35451808..35451922,+__1160.1.0.0	80	90	-	10	9.79e-05	1	GAGGTGTGACT
TFAP2B(var.2)	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	20	30	+	10.2	9.79e-05	0.0727	TCCCTGGGGCG
TFAP2B(var.2)	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	85	95	-	10.2	9.79e-05	0.0727	TCCCTGGGGCG
SP4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.1.0	33	49	-	2.41818	9.79e-05	0.0363	ATAGCCCCGCCCGGCGG
JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:118532891..118533005,+__1343.1.0.0	63	75	-	9.22449	9.79e-05	0.358	ACTGTGACGTAAC
ETV5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.1.0	31	40	+	10.8727	9.79e-05	0.144	GCCGGATGGG
ETV5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:72209446..72209560,-__370.1.0.0	31	40	+	10.8727	9.79e-05	0.144	GCCGGATGGG
ETV5	FLIPPED__Enhancer.flip.antisense__chr5:25910701..25910815,+__2597.1.0.0	42	51	+	10.8727	9.79e-05	0.144	AACGGAAGCA
ETV5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.0.0	64	73	-	10.8727	9.79e-05	0.144	AACGGAAGCA
ETV5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr5:25910701..25910815,-__2204.1.1.0	64	73	-	10.8727	9.79e-05	0.144	AACGGAAGCA
HINFP	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	7	18	-	9.93939	9.79e-05	0.111	TGGCGTCCCCCG
HINFP	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	97	108	+	9.93939	9.79e-05	0.111	TGGCGTCCCCCG
HSF2	WILDTYPE__mrna.noflip.NA__chr13:111855327..111855441,+__1008.1.0.0	53	65	-	8.10909	9.79e-05	1	TTCCAGAACTATA
ZBTB33	FLIPPED__Lincrna.flip.antisense__chr8:90769868..90769982,+__2438.1.0.0	29	43	-	9.48485	9.8e-05	0.133	CGCTCGCGGCCCTCC
ZBTB33	WILDTYPE__Lincrna.flip.sense__chr8:90769868..90769982,-__875.1.0.0	72	86	+	9.48485	9.8e-05	0.133	CGCTCGCGGCCCTCC
TFAP2C	WILDTYPE__mrna.flip.sense__chr16:23652545..23652659,-__1315.1.0.0	102	113	+	10.6224	9.8e-05	0.0877	CGGCCCAGGGCC
TFAP2C	FLIPPED__mrna.flip.antisense__chr16:23652545..23652659,+__2529.1.0.0	2	13	-	10.6224	9.8e-05	0.0877	CGGCCCAGGGCC
Pparg::Rxra	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr14:56046793..56046907,-__291.1.1.0	70	84	-	10.2613	9.8e-05	0.19	CGGAGGCAGAGGCCG
ETV3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.2.1	101	110	+	10.6197	9.8e-05	0.183	GCCGTAAGTG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5015136..5015250,-__1169.1.1.0	101	110	+	10.6197	9.8e-05	0.183	GCCGTAAGTG
GLI2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.0.0	51	62	-	9.60345	9.8e-05	0.331	GCGCCCGCACTG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:125439321..125439435,+__1454.1.1.0	51	62	-	9.60345	9.8e-05	0.331	GCGCCCGCACTG
Mitf	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.1	14	23	+	10.3673	9.8e-05	0.288	GCTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559539..45559653,-__531.1.2.0	14	23	+	10.3673	9.8e-05	0.288	GCTCACGTGC
Mitf	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	94	103	+	10.3673	9.8e-05	0.288	GCTCACGTGC
Ar	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	45	61	-	5.44828	9.8e-05	0.882	GGGCACACGAGGAACTT
ELK1	WILDTYPE__mrna.flip.sense__chr5:74062904..74063018,-__1370.1.0.0	24	33	+	9.38298	9.8e-05	0.114	GACGGAAGTT
ELK1	FLIPPED__Antisense.flip.antisense__chr1:234509363..234509477,+__2328.1.0.0	39	48	+	9.38298	9.8e-05	0.114	GCCGGACGTG
ELK1	FLIPPED__mrna.flip.antisense__chr1:234509339..234509453,-__2740.1.0.0	43	52	-	9.38298	9.8e-05	0.114	GCCGGACGTG
ELK1	WILDTYPE__mrna.flip.sense__chr1:234509339..234509453,+__967.1.0.0	63	72	+	9.38298	9.8e-05	0.114	GCCGGACGTG
ELK1	WILDTYPE__Antisense.flip.sense__chr1:234509363..234509477,-__57.1.0.0	67	76	-	9.38298	9.8e-05	0.114	GCCGGACGTG
ELK1	FLIPPED__mrna.flip.antisense__chr5:74062904..74063018,+__2532.1.0.0	82	91	-	9.38298	9.8e-05	0.114	GACGGAAGTT
JDP2(var.2)	FLIPPED__Antisense.flip.antisense__chr9:123605282..123605396,-__2731.1.0.0	22	33	+	5.38776	9.8e-05	0.28	GATGACGCCAGA
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	55	66	+	5.38776	9.8e-05	0.28	GGTGCCGTCACC
JDP2(var.2)	WILDTYPE__mrna.noflip.NA__chr19:48867670..48867784,+__1049.1.0.0	55	66	-	5.38776	9.8e-05	0.28	GGTGACGGCACC
JDP2(var.2)	WILDTYPE__Antisense.flip.sense__chr9:123605282..123605396,+__889.1.0.0	82	93	-	5.38776	9.8e-05	0.28	GATGACGCCAGA
NFKB1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	40	52	+	0.693878	9.8e-05	0.272	CGGGGTACTCCCA
NFKB1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	63	75	-	0.693878	9.8e-05	0.272	CGGGGTACTCCCA
NFKB1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	63	75	-	0.693878	9.8e-05	0.272	CGGGGTACTCCCA
TFAP2B	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	16	27	+	10.6364	9.8e-05	0.0953	CGCCCTAGGGGC
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr8:30601601..30601715,+__852.1.1.0	16	27	+	10.6364	9.8e-05	0.0953	TGGCCCGCGGCA
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr1:26827462..26827576,+__2559.1.0.0	73	84	+	10.6364	9.8e-05	0.0953	TCCCGCGGGGCG
TFAP2B	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	+	10.6364	9.8e-05	0.0953	CGCCGTAGGGCT
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr1:26827439..26827553,+__1838.1.0.0	96	107	+	10.6364	9.8e-05	0.0953	TCCCGCGGGGCG
TFAP2B	FLIPPED__Enhancer.flip.antisense__chr1:26827439..26827553,-__2843.1.0.0	8	19	-	10.6364	9.8e-05	0.0953	TCCCGCGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	-	10.6364	9.8e-05	0.0953	CGCCGTAGGGCT
TFAP2B	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	-	10.6364	9.8e-05	0.0953	CGCCGTAGGGCT
TFAP2B	WILDTYPE__Enhancer.flip.sense__chr1:26827462..26827576,-__2131.1.0.0	31	42	-	10.6364	9.8e-05	0.0953	TCCCGCGGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.1.0	67	78	-	10.6364	9.8e-05	0.0953	CCCCCCCGGCCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:110318198..110318312,-__1476.1.0.0	67	78	-	10.6364	9.8e-05	0.0953	CCCCCCCGGCCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.1	82	93	-	10.6364	9.8e-05	0.0953	CGGCCTGAGGCG
TFE3	WILDTYPE__Enhancer.noflip.NA__chr18:72695302..72695416,-__2179.1.0.0	24	33	-	10.7347	9.8e-05	0.173	ATCACATGAT
TFE3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.0.0	33	42	+	10.7347	9.8e-05	0.173	ATCACATGAT
TFE3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:72695351..72695465,+__1886.1.1.0	33	42	+	10.7347	9.8e-05	0.173	ATCACATGAT
TFE3	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	10.7347	9.8e-05	0.173	GTCACGTGGT
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	10.7347	9.8e-05	0.173	GTCACGTGGT
Bach1::Mafk	WILDTYPE__Enhancer.noflip.NA__chr16:86965090..86965204,-__2168.1.0.0	66	80	+	6.18421	9.8e-05	0.3	GACCTGACTCACCCA
MNT	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523606..70523720,+__1859.1.2.0	24	33	+	11.6667	9.8e-05	0.367	ATCACGTGCA
HOXC12	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	69	79	-	9.94545	9.8e-05	1	AGTCATTAAAT
DMRT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.0	91	101	+	11.0984	9.8e-05	1	CTTGTATCAGC
DMRT3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.0.0	91	101	+	11.0984	9.8e-05	1	CTTGTATCAGC
DMRT3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.2.1	91	101	+	11.0984	9.8e-05	1	CTTGTATCAGC
DMRT3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:86114662..86114776,+__1981.1.1.0	91	101	+	11.0984	9.8e-05	1	CTTGTATCAGC
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr9:33165854..33165968,+__1828.1.0.0	22	34	+	10.5102	9.8e-05	0.535	TAGAGGTCAGAGT
NR2F1	WILDTYPE__Enhancer.noflip.NA__chr9:33165831..33165945,-__2121.1.0.0	58	70	-	10.5102	9.8e-05	0.535	TAGAGGTCAGAGT
CEBPG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	65	74	+	9.67347	9.8e-05	0.93	CTTACGTAAT
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	34	48	+	10.6531	9.8e-05	1	AGTGTGTTTACTGAA
FOXA1	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	45	59	-	10.6531	9.8e-05	1	AGTGTGTTTACTGAA
FOXA1	WILDTYPE__Lincrna.noflip.NA__chr12:24715527..24715641,-__223.1.0.0	63	77	+	10.6531	9.8e-05	1	TTGTTATTTGCACTC
NFYB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	16	30	+	9.65385	9.8e-05	0.242	AGGACCACCAATAAG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.0.0	21	33	-	8.86885	9.8e-05	0.0653	ACCCTTGCGGGGG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:44287119..44287233,-__2247.1.1.0	21	33	-	8.86885	9.8e-05	0.0653	ACCCTTGCGGGGG
REST	WILDTYPE__Antisense.noflip.NA__chr1:172113899..172114013,-__29.1.0.0	35	55	-	4.08163	9.81e-05	0.252	TTTAGGACCAGGAAAAGGGGG
REST	WILDTYPE__Antisense.noflip.NA__chr3:101395214..101395328,+__535.1.0.0	11	31	+	4.08163	9.81e-05	0.252	GTCCCACCCAGGGCCAGGGCC
USF2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	32	42	+	10.3673	9.81e-05	0.193	CCCAGGTGATT
USF2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	32	42	+	10.3673	9.81e-05	0.193	CCCAGGTGATT
Nr2f6(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:73050975..73051089,-__943.1.0.0	74	88	+	-7.37143	9.81e-05	1	CAGGGGAAAAGCTCA
CREB3L1	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	53	66	+	7.59091	9.81e-05	0.365	CCGCCACGTGCTGG
CREB3L1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	49	62	-	7.59091	9.81e-05	0.365	CCGCCACGTGCTGG
CREB3L1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	49	62	-	7.59091	9.81e-05	0.365	CCGCCACGTGCTGG
Pou2f3	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	17	32	-	9.76829	9.81e-05	1	CCTCATTCAAATTCGT
Pou2f3	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	54	69	+	9.76829	9.81e-05	1	CCTCATTCAAATTCGT
Pou2f3	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	46	61	-	9.76829	9.81e-05	1	CCTCATTCAAATTCGT
TBX5	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	35	42	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	67	74	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	FLIPPED__Antisense.flip.antisense__chr20:47895099..47895213,-__2677.1.0.0	81	88	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	FLIPPED__Lincrna.flip.antisense__chr6:86388416..86388530,+__2420.1.0.0	103	110	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.0	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.4.1	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.2.0	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.0.0	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.1.0	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:1922127..1922241,-__1504.1.3.0	106	113	-	10.3621	9.81e-05	0.822	AGGTGCGA
MGA	WILDTYPE__Lincrna.noflip.NA__chr11:76155636..76155750,-__197.1.0.0	25	32	-	11.2424	9.81e-05	0.908	ACGTGTGA
MGA	WILDTYPE__Lincrna.noflip.NA__chr3:72149976..72150090,-__591.1.0.0	78	85	-	11.2424	9.81e-05	0.908	ACGTGTGA
MGA	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	80	87	-	11.2424	9.81e-05	0.908	ACGTGTGA
MGA	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	80	87	-	11.2424	9.81e-05	0.908	ACGTGTGA
Atf1	WILDTYPE__mrna.flip.sense__chr6:30028962..30029076,+__1214.1.0.0	6	13	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__mrna.flip.sense__chr19:36036448..36036562,+__1170.1.0.0	12	19	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	13	20	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	13	20	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	18	25	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	18	25	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	21	28	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Lincrna.flip.sense__chr8:42128733..42128847,-__857.1.0.0	21	28	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.noflip.NA__chr14:55738761..55738875,-__290.1.0.0	21	28	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	24	31	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	24	31	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	24	31	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	32	39	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.noflip.NA__chr14:50053216..50053330,+__289.1.0.0	32	39	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	33	40	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	33	40	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	33	40	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	33	40	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	36	43	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	36	43	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	38	45	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	38	45	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Enhancer.flip.sense__chr8:142275681..142275795,+__1917.1.0.0	39	46	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	40	47	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Enhancer.flip.antisense__chr8:142275676..142275790,+__2600.1.0.0	44	51	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chrX:149106755..149106869,-__2734.1.0.0	44	51	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	49	56	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	55	62	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr6:30028899..30029013,+__2416.1.0.0	69	76	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	70	77	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	70	77	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	74	81	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	74	81	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Enhancer.noflip.NA__chr1:7764641..7764755,-__2311.1.0.0	77	84	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	78	85	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr1:173837092..173837206,+__2324.1.0.0	79	86	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	83	90	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	86	93	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	92	99	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr19:36036367..36036481,+__2374.1.0.0	93	100	-	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Enhancer.noflip.NA__chr22:30666981..30667095,-__2298.1.0.0	95	102	-	11.2459	9.81e-05	0.377	GTGACGTC
TBX5	WILDTYPE__Lincrna.flip.sense__chr6:86388416..86388530,-__760.1.0.0	5	12	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.1	27	34	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.1.0	27	34	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.3.0	27	34	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.2.0	27	34	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr20:47895099..47895213,+__478.1.0.0	27	34	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	41	48	+	10.3621	9.81e-05	0.822	AGGTGCGA
TBX5	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	73	80	+	10.3621	9.81e-05	0.822	AGGTGCGA
MGA	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	28	35	+	11.2424	9.81e-05	0.908	ACGTGTGA
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	1	8	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	1	8	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Enhancer.noflip.NA__chr22:30666985..30667099,+__2005.1.0.0	9	16	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.1.0	15	22	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:36036367..36036481,-__379.1.0.0	15	22	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	16	23	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	16	23	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr7:124569872..124569986,+__775.1.0.0	22	29	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	25	32	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr1:173837092..173837206,-__35.1.0.0	29	36	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr3:62304532..62304646,-__586.1.0.0	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.1	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.3.0	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.2.0	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.0.0	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:121454255..121454369,-__1478.1.1.0	30	37	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	31	38	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	31	38	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	31	38	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	31	38	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.0.0	33	40	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:145382340..145382454,-__15.1.1.0	33	40	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.2.0	34	41	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	34	41	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	36	43	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	36	43	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	38	45	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chr8:128806707..128806821,+__835.1.0.0	38	45	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.1.0	39	46	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:30028899..30029013,-__745.1.0.0	39	46	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.noflip.NA__chr15:99436728..99436842,-__340.1.0.0	40	47	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	53	60	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	53	60	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	59	66	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.0.0	59	66	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180311..224180425,+__2012.1.1.0	59	66	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	62	69	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	62	69	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Antisense.flip.sense__chrX:149106755..149106869,+__933.1.0.0	64	71	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	WILDTYPE__Enhancer.flip.sense__chr8:142275676..142275790,-__2210.1.0.0	64	71	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr8:128806707..128806821,-__2724.1.0.0	68	75	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Enhancer.flip.antisense__chr8:142275681..142275795,-__2884.1.0.0	69	76	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr3:62304532..62304646,+__2396.1.0.0	76	83	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr7:124569872..124569986,-__2718.1.0.0	84	91	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	87	94	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Lincrna.flip.antisense__chr8:42128733..42128847,+__2435.1.0.0	87	94	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	90	97	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__mrna.flip.antisense__chr19:36036448..36036562,-__2782.1.0.0	96	103	+	11.2459	9.81e-05	0.377	GTGACGTC
Atf1	FLIPPED__mrna.flip.antisense__chr6:30028962..30029076,-__2798.1.0.0	102	109	+	11.2459	9.81e-05	0.377	GTGACGTC
JUNB	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	15	25	-	10.2449	9.81e-05	0.269	AAATGACTAAT
JUNB	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	15	25	-	10.2449	9.81e-05	0.269	AAATGACTAAT
JUNB	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	77	87	-	10.2449	9.81e-05	0.269	AAATGACTAAT
BATF3	WILDTYPE__Lincrna.noflip.NA__chr20:48883955..48884069,+__480.1.0.0	15	28	-	-0.636364	9.81e-05	0.271	GGATGACGGGACCT
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr10:74032412..74032526,-__2139.1.0.0	29	43	-	9.61818	9.81e-05	0.115	GCCCGCCCCCGGGGC
ZIC4	WILDTYPE__Enhancer.noflip.NA__chr10:74032424..74032538,+__1846.1.0.0	60	74	+	9.61818	9.81e-05	0.115	GCCCGCCCCCGGGGC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.0.0	96	110	+	9.61818	9.81e-05	0.115	GGGGCCCCGCCGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:91282804..91282918,-__1497.1.1.0	96	110	+	9.61818	9.81e-05	0.115	GGGGCCCCGCCGCGC
Klf4	WILDTYPE__Antisense.noflip.NA__chr14:62217781..62217895,-__296.1.0.0	10	19	+	9.93878	9.81e-05	0.0308	GAGGCGTGGC
Klf4	WILDTYPE__Lincrna.flip.sense__chrX:73072514..73072628,-__944.1.0.0	5	14	-	9.93878	9.81e-05	0.0308	GAGGCGTGGC
Klf4	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	32	41	-	9.93878	9.81e-05	0.0308	GAGGCGTGGC
Klf4	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	74	83	+	9.93878	9.81e-05	0.0308	GAGGCGTGGC
Klf4	FLIPPED__Lincrna.flip.antisense__chrX:73072514..73072628,+__2445.1.0.0	101	110	+	9.93878	9.81e-05	0.0308	GAGGCGTGGC
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826970..222827084,-__2183.1.0.0	62	79	+	10.1778	9.81e-05	0.965	GCGATCACAGCATTTTTT
MAFF	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:222826943..222827057,+__1890.1.0.0	63	80	-	10.1778	9.81e-05	0.965	GCGATCACAGCATTTTTT
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	23	40	+	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	23	40	+	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.0	23	40	+	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.2.1	23	40	+	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE__mrna.noflip.NA__chr9:130540944..130541058,-__1121.1.0.0	56	73	+	-16.2632	9.81e-05	0.0566	AGGGGAAGGGGAGGTGGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	85	102	-	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.0	85	102	-	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	85	102	-	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.2.1	85	102	-	-16.2632	9.81e-05	0.0566	GAAAGGAGGGGGTGGAGG
BHLHE40	WILDTYPE__Lincrna.noflip.NA__chr12:122502159..122502273,+__217.1.0.0	7	16	+	10.0577	9.81e-05	0.308	AGCACGTGGC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.1.0	51	60	+	10.0577	9.81e-05	0.308	AGCACGTGGC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr17:5372218..5372332,-__1039.1.0.0	51	60	+	10.0577	9.81e-05	0.308	AGCACGTGGC
BHLHE40	FLIPPED__mrna.flip.antisense__chr17:5372218..5372332,+__2454.1.0.0	55	64	-	10.0577	9.81e-05	0.308	AGCACGTGGC
RUNX3	WILDTYPE__Lincrna.noflip.NA__chr7:130597856..130597970,-__777.1.0.0	4	13	-	10.8077	9.81e-05	0.515	AAACCACCAA
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr14:62070572..62070686,-__2156.1.0.0	19	28	-	10.8077	9.81e-05	0.515	AAACCACCAA
RUNX3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.1.0	60	69	-	10.8077	9.81e-05	0.515	AAACCACCAA
RUNX3	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:31705830..31705944,+__1978.1.0.0	60	69	-	10.8077	9.81e-05	0.515	AAACCACCAA
RUNX3	WILDTYPE__Lincrna.noflip.NA__chr7:130597921..130598035,-__778.1.0.0	69	78	-	10.8077	9.81e-05	0.515	AAACCACCAA
RUNX3	WILDTYPE__Enhancer.noflip.NA__chr6:31705868..31705982,-__2271.1.0.0	84	93	+	10.8077	9.81e-05	0.515	AAACCACCAA
TFCP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.0.0	45	54	+	10.697	9.81e-05	1	AAACCGGAAC
TFCP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97889399..97889513,+__149.1.1.0	45	54	+	10.697	9.81e-05	1	AAACCGGAAC
EGR3	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	27	41	+	5.18966	9.81e-05	0.042	CTCCGCCCTCCCGCC
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.0	22	36	-	5.18966	9.81e-05	0.042	CCCCGCCCCCGGCTG
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.0.0	22	36	-	5.18966	9.81e-05	0.042	CCCCGCCCCCGGCTG
EGR3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.2.1	22	36	-	5.18966	9.81e-05	0.042	CCCCGCCCCCGGCTG
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:32077843..32077957,+__1582.1.1.0	22	36	-	5.18966	9.81e-05	0.042	CCCCGCCCCCGGCTG
EGR3	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	74	88	-	5.18966	9.81e-05	0.042	CTCCGCCCTCCCGCC
EGR2	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	22	32	-	8.67241	9.81e-05	0.0887	ACGCGCACTCA
EGR2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:24521139..24521253,+__1018.1.1.0	38	48	-	8.67241	9.81e-05	0.0887	ACTCCCCCGCC
EGR2	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	49	59	+	8.67241	9.81e-05	0.0887	ACGCGCACTCA
EGR2	WILDTYPE__Lincrna.noflip.NA__chr1:208042476..208042590,-__47.1.0.0	43	53	-	8.67241	9.81e-05	0.0887	CTTCCCACGCT
EGR2	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	57	67	+	8.67241	9.81e-05	0.0887	CCTCCTCCGCA
EGR2	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	56	66	-	8.67241	9.81e-05	0.0887	ACGCGCACTCA
REL	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	20	29	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	20	29	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	20	29	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	20	29	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr2:74729664..74729778,+__447.1.0.0	33	42	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	36	45	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	36	45	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	47	56	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	47	56	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	47	56	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	47	56	+	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.1	43	52	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.0.0	43	52	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.2.0	43	52	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr17:21117577..21117691,+__359.1.1.0	43	52	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE__Antisense.noflip.NA__chr5:134375395..134375509,-__660.1.0.0	51	60	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.0	71	80	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr9:136890532..136890646,+__902.1.3.1	71	80	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.0.0	91	100	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
REL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37178274..37178388,-__382.1.1.0	91	100	-	10.7071	9.81e-05	0.341	CGGGGCTTCC
Rxra	WILDTYPE__Enhancer.noflip.NA__chr16:81515207..81515321,+__1873.1.0.0	87	100	+	1.78049	9.81e-05	0.535	GAGGTCAGAAGTCC
RREB1	WILDTYPE__mrna.noflip.NA__chr19:49993961..49994075,+__1237.1.0.0	83	102	+	2.47706	9.81e-05	0.0768	CCCCACAAAACCAAGCGAGG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	17	28	+	10.6452	9.81e-05	0.281	TGGACCACCCCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.3.0	17	28	+	10.6452	9.81e-05	0.281	TGGACCACCCCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	17	28	+	10.6452	9.81e-05	0.281	TGGACCACCCCA
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.4.0	17	28	+	10.6452	9.81e-05	0.281	TGGACCACCCCA
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	17	28	+	10.6452	9.81e-05	0.281	TGGACCACCCCA
ZBTB7C	CONTROL_SNP_INDIV__control.flip.sense__chr17:76375037..76375152,+__2319.1.1.0	36	47	-	10.6452	9.81e-05	0.281	CCGCCCACCCTC
ZBTB7C	CONTROL_BUT_HAS_SNP__control.flip.sense__chr17:76375037..76375152,+__2319.1.0.0	36	47	-	10.6452	9.81e-05	0.281	CCGCCCACCCTC
ZBTB7C	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:26438141..26438255,+__798.1.1.0	46	57	-	10.6452	9.81e-05	0.281	CCGCCCACCCTC
ZBTB7C	CONTROL_FLIPPED__control.flip.antisense__chr17:76375037..76375152,-__2898.1.0.0	69	80	+	10.6452	9.81e-05	0.281	CCGCCCACCCTC
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr11:73053942..73054056,+__990.1.0.0	95	106	+	10.6452	9.81e-05	0.281	CTGACCACCGCG
MAFG	FLIPPED__Enhancer.flip.antisense__chr3:194298972..194299086,-__2874.1.0.0	13	33	+	9.05102	9.81e-05	1	TGTCTCCTGAGTGAGCAGAGT
MAFG	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.1.0	82	102	-	9.05102	9.81e-05	1	TGTCTCCTGAGTGAGCAGAGT
MAFG	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr3:194298972..194299086,+__1900.1.0.0	82	102	-	9.05102	9.81e-05	1	TGTCTCCTGAGTGAGCAGAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:53578591..53578705,+__634.1.0.0	13	33	-	8.87755	9.81e-05	0.0241	CGGGGAGGGAAGCAGGAGGGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr17:46623961..46624075,+__364.1.0.0	25	45	-	8.87755	9.81e-05	0.0241	AGAGAGAGGAGGGGGAGGGGA
ZNF263	WILDTYPE__Antisense.noflip.NA__chr12:123849435..123849549,+__218.1.0.0	52	72	-	8.87755	9.81e-05	0.0241	CAGAGAGGCGGGTGGGGGAGG
ZNF263	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:176176611..176176725,-__1134.1.1.0	64	84	-	8.87755	9.81e-05	0.0241	GAAAGACGGGAACGTAGGGGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chrX:65217999..65218113,-__2222.1.0.0	70	90	-	8.87755	9.81e-05	0.0241	TGAGGAGGTATGGGCTAGAAG
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr5:158527604..158527718,+__669.1.0.0	5	25	+	8.87755	9.81e-05	0.0241	GGAGAGGGGACAGAGGGAAAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chrX:65217997..65218111,+__1929.1.0.0	27	47	+	8.87755	9.81e-05	0.0241	TGAGGAGGTATGGGCTAGAAG
ZNF263	FLIPPED__Lincrna.flip.antisense__chr4:53578591..53578705,-__2698.1.0.0	82	102	+	8.87755	9.81e-05	0.0241	CGGGGAGGGAAGCAGGAGGGT
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:121756746..121756860,+__1093.1.0.0	85	105	+	8.87755	9.81e-05	0.0241	GGGGAAGGCGTGAGGAAAGTA
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.0.0	46	56	-	10.5962	9.81e-05	0.0776	CACCTGAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:238499342..238499456,-__1567.1.1.0	46	56	-	10.5962	9.81e-05	0.0776	CACCTGAGGCA
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.1.0	64	74	-	10.5962	9.81e-05	0.0776	CGCCGAAGGCC
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:65958508..65958622,-__810.1.0.0	64	74	-	10.5962	9.81e-05	0.0776	CGCCGAAGGCC
Myod1	FLIPPED__mrna.flip.antisense__chr6:31465842..31465956,-__2759.1.0.0	67	79	+	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.2.0	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.0	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.0.0	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.3.0	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.1.0	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr6:31465842..31465956,+__1099.1.4.1	36	48	-	10.7755	9.81e-05	0.202	GTCACCTGCGCCC
Tcf12	WILDTYPE__Antisense.noflip.NA__chr12:120639077..120639191,+__214.1.0.0	64	74	-	10.5918	9.81e-05	0.218	AGCAGGTGGCA
Tcf12	WILDTYPE__Antisense.noflip.NA__chr12:120639049..120639163,+__213.1.0.0	92	102	-	10.5918	9.81e-05	0.218	AGCAGGTGGCA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr15:101389877..101389991,+__310.1.0.0	16	26	+	10.5918	9.81e-05	0.218	AGCAGGTGGCA
SREBF1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	30	39	-	10.4878	9.81e-05	0.472	CTCACGTCAG
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr6:45678360..45678474,-__2110.1.0.0	86	95	-	10.4878	9.81e-05	0.472	CTCACGTCAG
SREBF1	WILDTYPE__Enhancer.noflip.NA__chr6:45678357..45678471,+__1817.1.0.0	23	32	+	10.4878	9.81e-05	0.472	CTCACGTCAG
SREBF1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	76	85	+	10.4878	9.81e-05	0.472	CTCACGTCAG
SREBF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	76	85	+	10.4878	9.81e-05	0.472	CTCACGTCAG
TCF3	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	+	11.2692	9.81e-05	0.404	CACAGCTGCG
TCF3	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	-	11.2692	9.81e-05	0.404	CACAGCTGCG
TCF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	-	11.2692	9.81e-05	0.404	CACAGCTGCG
TCF3	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	-	11.2692	9.81e-05	0.404	CACAGCTGCG
TCF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	-	11.2692	9.81e-05	0.404	CACAGCTGCG
NFATC1	WILDTYPE__Antisense.noflip.NA__chr7:130792821..130792935,-__781.1.0.0	8	17	+	10.3821	9.82e-05	1	AGTTTCCATA
SP2	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	39	53	+	9.55172	9.82e-05	0.0197	TTTCCTCCCTCCTCG
SP2	WILDTYPE__Antisense.flip.sense__chr5:38556814..38556928,+__692.1.0.0	39	53	+	9.55172	9.82e-05	0.0197	CGCGCGCCCCCGCCG
SP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.1.0	27	41	-	9.55172	9.82e-05	0.0197	TCTCCTCCCTCCAGC
SP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:2988811..2988925,+__1098.1.0.0	27	41	-	9.55172	9.82e-05	0.0197	TCTCCTCCCTCCAGC
SP2	WILDTYPE__Antisense.flip.sense__chr1:40974319..40974433,-__74.1.0.0	44	58	+	9.55172	9.82e-05	0.0197	GGACCGCCTTCCCAG
SP2	WILDTYPE__Antisense.noflip.NA__chr3:136580826..136580940,-__548.1.0.0	41	55	-	9.55172	9.82e-05	0.0197	CCTCCGCTCCCTCCA
SP2	FLIPPED__Antisense.flip.antisense__chr1:40974319..40974433,+__2331.1.0.0	57	71	-	9.55172	9.82e-05	0.0197	GGACCGCCTTCCCAG
SP2	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	62	76	-	9.55172	9.82e-05	0.0197	TTTCCTCCCTCCTCG
SP2	FLIPPED__Antisense.flip.antisense__chr5:38556814..38556928,-__2705.1.0.0	62	76	-	9.55172	9.82e-05	0.0197	CGCGCGCCCCCGCCG
SPIC	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	82	95	+	10.2254	9.82e-05	0.317	TATATCCGGAAGCA
Tcf7	WILDTYPE__Lincrna.noflip.NA__chr8:54436488..54436602,-__859.1.0.0	46	57	+	8.3871	9.82e-05	1	AGAGTTAAAAGG
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.1.0	25	39	-	7.22951	9.82e-05	0.0742	GGCCCCGCGCATGCG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:135676193..135676307,-__398.1.0.0	25	39	-	7.22951	9.82e-05	0.0742	GGCCCCGCGCATGCG
Klf12	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	47	61	+	7.22951	9.82e-05	0.0742	CGCCCCGCCCCCCGG
Klf12	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	54	68	-	7.22951	9.82e-05	0.0742	CGCCCCGCCCCCCGG
KLF13	WILDTYPE__Antisense.flip.sense__chr5:43603171..43603285,-__697.1.0.0	90	107	+	3.31034	9.82e-05	0.361	CCGCCAGGCCCCCTCCAC
KLF13	FLIPPED__Antisense.flip.antisense__chr5:43603171..43603285,+__2410.1.0.0	8	25	-	3.31034	9.82e-05	0.361	CCGCCAGGCCCCCTCCAC
KLF13	WILDTYPE__Antisense.noflip.NA__chr10:119806425..119806539,+__111.1.0.0	25	42	-	3.31034	9.82e-05	0.361	AGGCCCCGCCCCTTCACG
HEY1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.1.0	8	17	-	10.7273	9.82e-05	0.173	TCCACGTGCA
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	8	17	-	10.7273	9.82e-05	0.173	TCCACGTGCA
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050140..21050254,+__1946.1.0.0	30	39	+	10.7273	9.82e-05	0.173	CGCACGCGGC
HEY1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.1.0	26	35	-	10.7273	9.82e-05	0.173	CGCACGCGGC
HEY1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr13:21050090..21050204,-__2239.1.0.0	26	35	-	10.7273	9.82e-05	0.173	CGCACGCGGC
HEY1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:42742369..42742483,+__1594.1.0.0	90	99	-	10.7273	9.82e-05	0.173	TCCACGTGCA
SREBF2(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	+	8.74545	9.82e-05	0.279	GTCACGCGAG
POU4F2	FLIPPED__mrna.flip.antisense__chr10:114710172..114710286,-__2742.1.0.0	39	54	+	6.14545	9.82e-05	1	AAAAATAATAAATAAA
POU4F2	WILDTYPE__mrna.flip.sense__chr10:114710172..114710286,+__972.1.0.0	61	76	-	6.14545	9.82e-05	1	AAAAATAATAAATAAA
HES5	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	2	13	-	1.01724	9.82e-05	0.298	GGGCACGTGACG
HES5	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	4	15	-	1.01724	9.82e-05	0.298	CGCCAGGTGCCA
HES5	WILDTYPE__Antisense.flip.sense__chr7:27135651..27135765,+__799.1.0.0	23	34	+	1.01724	9.82e-05	0.298	GGGCACGTGACG
HES5	FLIPPED__Antisense.flip.antisense__chr7:27135651..27135765,-__2720.1.0.0	81	92	-	1.01724	9.82e-05	0.298	GGGCACGTGACG
HES5	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	100	111	+	1.01724	9.82e-05	0.298	CGCCAGGTGCCA
HES5	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	102	113	+	1.01724	9.82e-05	0.298	GGGCACGTGACG
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.0.0	28	39	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.1	28	39	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:166944741..166944855,-__1424.1.1.0	28	39	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	30	41	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	30	41	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.0.0	59	70	-	10.1711	9.82e-05	0.04	CCCACTCCCTCT
SP8	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chrX:125606684..125606798,-__2309.1.1.0	59	70	-	10.1711	9.82e-05	0.04	CCCACTCCCTCT
SP8	FLIPPED__Antisense.flip.antisense__chr12:72667252..72667366,+__2354.1.0.0	93	104	-	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE__Antisense.flip.sense__chr12:72667252..72667366,-__253.1.0.0	11	22	+	10.1711	9.82e-05	0.04	GCACCGCCTCCC
SP8	WILDTYPE__Enhancer.noflip.NA__chrX:125606711..125606825,+__2016.1.0.0	18	29	+	10.1711	9.82e-05	0.04	CCCACTCCCTCT
SP8	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	74	85	+	10.1711	9.82e-05	0.04	GCACCGCCTCCC
FEV	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	27	36	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	46	55	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__mrna.noflip.NA__chr12:49412557..49412671,-__1001.1.0.0	57	66	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	60	69	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	60	69	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	60	69	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	60	69	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	60	69	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr4:74124805..74124919,+__642.1.0.0	69	78	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	100	109	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	101	110	+	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	6	15	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	6	15	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.1.0	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.1	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	25	34	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	46	55	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.0.0	48	57	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:40675065..40675179,+__1499.1.1.0	48	57	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.0.0	55	64	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.0	55	64	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr15:45571390..45571504,-__320.1.1.1	55	64	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	58	67	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	60	69	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE__Lincrna.noflip.NA__chr19:36822620..36822734,-__380.1.0.0	62	71	-	10.8077	9.82e-05	0.148	TCCGGAAACG
FEV	WILDTYPE__Antisense.noflip.NA__chr15:45571414..45571528,-__321.1.0.0	79	88	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	79	88	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
FEV	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	79	88	-	10.8077	9.82e-05	0.148	GGCGGAAGTG
KLF5	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	8	17	+	10.3265	9.83e-05	0.0298	ATCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	4	13	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	4	13	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	4	13	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	4	13	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	4	13	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr12:56693772..56693886,-__1158.1.0.0	18	27	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.0.0	18	27	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.1	18	27	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.1.0	18	27	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:137514778..137514892,+__1088.1.2.0	18	27	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE__Antisense.flip.sense__chr12:56693840..56693954,+__241.1.0.0	20	29	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	30	39	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	23	32	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	23	32	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__Lincrna.noflip.NA__chr20:57090475..57090589,+__484.1.0.0	33	42	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__mrna.flip.sense__chr6:13574753..13574867,+__1094.1.0.0	39	48	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	39	48	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr2:209119873..209119987,-__2667.1.0.0	52	61	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.1.0	47	56	-	10.3265	9.83e-05	0.0298	ATCCCTCCCC
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:29214211..29214325,+__1827.1.0.0	47	56	-	10.3265	9.83e-05	0.0298	ATCCCTCCCC
KLF5	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.1	54	63	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.2.0	54	63	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.0.0	54	63	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr2:209119873..209119987,+__421.1.1.0	54	63	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr6:13574753..13574867,-__2758.1.0.0	67	76	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	81	90	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	76	85	-	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	FLIPPED__Antisense.flip.antisense__chr12:56693840..56693954,-__2641.1.0.0	86	95	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr5:137514778..137514892,-__2756.1.0.0	88	97	+	10.3265	9.83e-05	0.0298	ACTCCGCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr11:82997017..82997131,-__991.1.0.0	89	98	+	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	FLIPPED__mrna.flip.antisense__chr12:56693772..56693886,+__2485.1.0.0	88	97	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	WILDTYPE__mrna.noflip.NA__chr3:29322482..29322596,+__1309.1.0.0	89	98	-	10.3265	9.83e-05	0.0298	CTCCCTCCCA
KLF5	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	98	107	-	10.3265	9.83e-05	0.0298	ATCCCTCCCC
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.1.0	27	43	-	8.94898	9.83e-05	0.405	GGGTCGGGGGAGGTGGA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:201798621..201798735,-__41.1.0.0	27	43	-	8.94898	9.83e-05	0.405	GGGTCGGGGGAGGTGGA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	12	22	+	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	12	22	+	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE__Enhancer.noflip.NA__chr5:100113448..100113562,-__2098.1.0.0	31	41	+	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.0.0	22	32	-	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr15:60547778..60547892,+__1763.1.1.0	22	32	-	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.1.0	47	57	-	10.5769	9.83e-05	0.462	AGCATGAGTCA
BATF::JUN	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:50431928..50432042,+__1257.1.0.0	47	57	-	10.5769	9.83e-05	0.462	AGCATGAGTCA
FOSL2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.1.0	11	21	-	9.63636	9.83e-05	0.273	TGCTGAGTCAG
FOSL2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr2:28583975..28584089,+__1958.1.0.0	11	21	-	9.63636	9.83e-05	0.273	TGCTGAGTCAG
FOSL2	CONTROL_SNP_INDIV__control.flip.sense__chr2:61378128..61378243,+__2317.1.2.0	52	62	+	9.63636	9.83e-05	0.273	CAGTGGCTCAC
FOSL2	CONTROL_BUT_HAS_SNP__control.flip.sense__chr2:61378128..61378243,+__2317.1.0.0	52	62	+	9.63636	9.83e-05	0.273	CAGTGGCTCAC
FOSL2	CONTROL_FLIPPED__control.flip.antisense__chr2:61378128..61378243,-__2896.1.0.0	54	64	-	9.63636	9.83e-05	0.273	CAGTGGCTCAC
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr10:4720371..4720485,-__128.1.0.0	95	105	+	9.63636	9.83e-05	0.273	TGCTGAGTCAG
FOSL2	WILDTYPE__Antisense.noflip.NA__chr22:32601053..32601167,+__524.1.0.0	100	110	+	9.63636	9.83e-05	0.273	CAGTGGCTCAC
Zfx	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.0.0	8	21	-	9.86364	9.83e-05	0.0694	GGTCTCCGGGCCTG
Zfx	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:203736184..203736298,-__1556.1.1.0	8	21	-	9.86364	9.83e-05	0.0694	GGTCTCCGGGCCTG
Zfx	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.1	15	28	-	9.86364	9.83e-05	0.0694	GACAGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.2.0	15	28	-	9.86364	9.83e-05	0.0694	GACAGCCTGGCCTG
Zfx	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.1.0	15	28	-	9.86364	9.83e-05	0.0694	GACAGCCTGGCCTG
Zfx	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr19:2169044..2169158,-__2069.1.0.0	15	28	-	9.86364	9.83e-05	0.0694	GACAGCCTGGCCTG
ELF4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.1.0	85	96	-	8.14754	9.83e-05	0.131	AGCCCGGATGTG
ELF4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:75947478..75947592,+__1983.1.0.0	85	96	-	8.14754	9.83e-05	0.131	AGCCCGGATGTG
Myc	WILDTYPE__Lincrna.noflip.NA__chr10:42970994..42971108,+__126.1.0.0	68	77	-	11.0364	9.83e-05	0.567	GCACGTGGTG
JUND(var.2)	WILDTYPE__Antisense.noflip.NA__chr10:97849937..97850051,-__148.1.0.0	41	55	-	9.51064	9.83e-05	0.377	GGAAGTGACGCAACG
EGR1	FLIPPED__Antisense.flip.antisense__chr4:4543788..4543902,-__2695.1.0.0	4	17	+	9.44231	9.83e-05	0.0321	CCTCCTCCGCCAGG
EGR1	WILDTYPE__Enhancer.flip.sense__chr20:62495643..62495757,-__2186.1.0.0	19	32	+	9.44231	9.83e-05	0.0321	CCGCTGCCGCCTCG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr20:30249548..30249662,+__1789.1.0.0	43	56	+	9.44231	9.83e-05	0.0321	GTCCCACCTCCAGG
EGR1	WILDTYPE__Enhancer.noflip.NA__chr10:17255131..17255245,+__1935.1.0.0	35	48	-	9.44231	9.83e-05	0.0321	CTCCCTCCCATGGC
EGR1	FLIPPED__Antisense.flip.antisense__chr4:4543833..4543947,-__2696.1.0.0	49	62	+	9.44231	9.83e-05	0.0321	CCTCCTCCGCCAGG
EGR1	WILDTYPE__Lincrna.noflip.NA__chr3:156534767..156534881,-__560.1.0.0	54	67	+	9.44231	9.83e-05	0.0321	CCCCCGCTGCCTGC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.1.0	53	66	-	9.44231	9.83e-05	0.0321	CCTCCTCCGCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:4543833..4543947,+__632.1.0.0	53	66	-	9.44231	9.83e-05	0.0321	CCTCCTCCGCCAGG
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.0.0	71	84	-	9.44231	9.83e-05	0.0321	TCTCTGCCCCCATC
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:1892488..1892602,+__1459.1.2.0	71	84	-	9.44231	9.83e-05	0.0321	TCTCTGCCCCCATC
EGR1	FLIPPED__Enhancer.flip.antisense__chr20:62495643..62495757,+__2586.1.0.0	83	96	-	9.44231	9.83e-05	0.0321	CCGCTGCCGCCTCG
EGR1	WILDTYPE__mrna.noflip.NA__chrY:16636329..16636443,+__1340.1.0.0	86	99	-	9.44231	9.83e-05	0.0321	TCTCTGCCGCCTCC
EGR1	WILDTYPE__Antisense.flip.sense__chr4:4543788..4543902,+__631.1.0.0	98	111	-	9.44231	9.83e-05	0.0321	CCTCCTCCGCCAGG
EGR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.1.0	98	111	-	9.44231	9.83e-05	0.0321	CAGCCGCCGCCATC
EGR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:108956300..108956414,+__1353.1.0.0	98	111	-	9.44231	9.83e-05	0.0321	CAGCCGCCGCCATC
RFX3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.0.0	79	94	-	8.40909	9.83e-05	0.44	GGTTTCCTTGATTATG
RFX3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:52645352..52645466,-__1445.1.1.0	79	94	-	8.40909	9.83e-05	0.44	GGTTTCCTTGATTATG
ELF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	55	66	+	7.87273	9.83e-05	0.139	AAACAGGAAATT
ELF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	55	66	+	7.87273	9.83e-05	0.139	AAACAGGAAATT
ELF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	55	66	+	7.87273	9.83e-05	0.139	AAACAGGAAATT
ELF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	73	84	-	7.87273	9.83e-05	0.139	AGAACGGAAGTA
ELF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.0.0	73	84	-	7.87273	9.83e-05	0.139	AGAACGGAAGTA
HNF4G	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.0	66	80	-	10.0577	9.83e-05	0.39	AGCGCCCAAAGGGCA
HNF4G	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:121030665..121030779,+__1744.1.1.1	66	80	-	10.0577	9.83e-05	0.39	AGCGCCCAAAGGGCA
FOSL1	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	7	17	+	9.52727	9.83e-05	0.257	GATGAGTAAGC
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373483..93373597,-__2044.1.0.0	12	22	+	9.52727	9.83e-05	0.257	CATGAGTCAGA
FOSL1	WILDTYPE__Enhancer.noflip.NA__chr10:93373526..93373640,+__1751.1.0.0	50	60	-	9.52727	9.83e-05	0.257	CATGAGTCAGA
FOSL1	WILDTYPE__Antisense.noflip.NA__chr1:160231444..160231558,+__26.1.0.0	83	93	+	9.52727	9.83e-05	0.257	CATGAGTCAGA
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	98	108	-	9.52727	9.83e-05	0.257	GATGAGTAAGC
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	98	108	-	9.52727	9.83e-05	0.257	GATGAGTAAGC
MTF1	FLIPPED__Antisense.flip.antisense__chr8:60031678..60031792,-__2729.1.0.0	7	20	+	5.19512	9.83e-05	0.538	TGCGCGCTCGGCGC
MTF1	WILDTYPE__Antisense.flip.sense__chr8:60031678..60031792,+__862.1.0.0	95	108	-	5.19512	9.83e-05	0.538	TGCGCGCTCGGCGC
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.0	25	36	+	9.67241	9.83e-05	0.365	ACGCCCACCCGG
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.0.0	25	36	+	9.67241	9.83e-05	0.365	ACGCCCACCCGG
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.2.1	25	36	+	9.67241	9.83e-05	0.365	ACGCCCACCCGG
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:12574875..12574989,+__654.1.1.0	25	36	+	9.67241	9.83e-05	0.365	ACGCCCACCCGG
ZBTB7B	WILDTYPE__Antisense.noflip.NA__chr14:101292375..101292489,+__277.1.0.0	28	39	+	9.67241	9.83e-05	0.365	GAGACCACCCCT
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	82	93	+	9.67241	9.83e-05	0.365	AGGACCCCCACC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.0.0	82	93	+	9.67241	9.83e-05	0.365	AGGACCCCCACC
ZBTB7B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.1	82	93	+	9.67241	9.83e-05	0.365	AGGACCCCCACC
ZBTB7B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.1.0	82	93	+	9.67241	9.83e-05	0.365	AGGACCCCCACC
EOMES	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.1	14	26	-	10.5	9.83e-05	1	CAGGCGTGAATTC
EOMES	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.1.0	14	26	-	10.5	9.83e-05	1	CAGGCGTGAATTC
EOMES	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:90602576..90602690,+__650.1.0.0	14	26	-	10.5	9.83e-05	1	CAGGCGTGAATTC
GATA2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	40	53	-	10.8727	9.83e-05	1	ATTCTCTTATCTGG
GATA2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	40	53	-	10.8727	9.83e-05	1	ATTCTCTTATCTGG
PAX5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:42306220..42306334,-__1620.1.0.0	28	46	+	9.83871	9.83e-05	0.159	CGACGCCGCCGGGTGGGGC
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	30	43	-	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	30	43	-	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PLAG1	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	61	74	-	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr10:31608065..31608179,-__2773.1.0.0	73	86	-	4.41837	9.83e-05	0.0785	GAGGGGTGGGGGGG
PLAG1	WILDTYPE__mrna.flip.sense__chr10:31608065..31608179,+__1145.1.0.0	29	42	+	4.41837	9.83e-05	0.0785	GAGGGGTGGGGGGG
PLAG1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	41	54	+	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	41	54	+	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PLAG1	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	72	85	+	4.41837	9.83e-05	0.0785	GAGGCGCAGCGGGA
PAX1	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	22	38	+	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	FLIPPED__mrna.flip.antisense__chr22:29196522..29196636,+__2503.1.0.0	97	113	+	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.0.0	2	18	-	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.1	2	18	-	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.2.0	2	18	-	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr22:29196522..29196636,-__1188.1.1.0	2	18	-	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
PAX1	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	77	93	-	4.25455	9.83e-05	0.619	CGTGACGCACGGCCGAG
SP1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	8	18	-	9.96154	9.83e-05	0.0221	TTTCCTCCCTC
SP1	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	39	49	+	9.96154	9.83e-05	0.0221	TTTCCTCCCTC
SP1	WILDTYPE__mrna.noflip.NA__chr1:193029170..193029284,-__962.1.0.0	47	57	-	9.96154	9.83e-05	0.0221	TCTCCTCCTTC
SP1	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	66	76	-	9.96154	9.83e-05	0.0221	TTTCCTCCCTC
FOXP1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446745..46446859,+__1968.1.0.0	58	72	-	10.3099	9.83e-05	0.406	CCCAAGTAAAAACAC
ESR1	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	38	54	+	-1.87879	9.83e-05	0.514	GGGGTCGCTGCGAACCC
ETV1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.1	14	23	+	10.9091	9.83e-05	0.14	GCCGGAACTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.2.0	14	23	+	10.9091	9.83e-05	0.14	GCCGGAACTG
ETV1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.1.0	14	23	+	10.9091	9.83e-05	0.14	GCCGGAACTG
ETV1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:85045083..85045197,-__1512.1.0.0	14	23	+	10.9091	9.83e-05	0.14	GCCGGAACTG
ETV1	WILDTYPE__Antisense.noflip.NA__chr20:34078773..34078887,-__471.1.0.0	85	94	+	10.9091	9.83e-05	0.14	GCCGGAACTG
MAF::NFE2	WILDTYPE__Antisense.noflip.NA__chr3:64670704..64670818,+__588.1.0.0	13	27	-	7.63934	9.84e-05	0.544	GTGAGTCATCGCTGC
USF1	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	14	+	10.2245	9.84e-05	0.239	TCCACGTGATA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr1:71546952..71547066,+__89.1.0.0	3	15	+	9.32787	9.84e-05	0.0589	GGCCTTCGTGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.1.0	12	24	+	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.1	12	24	+	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.0.0	12	24	+	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:8559367..8559481,+__1700.1.2.0	12	24	+	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.flip.sense__chr22:29196597..29196711,+__523.1.0.0	62	74	+	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
TFAP2A(var.3)	FLIPPED__mrna.flip.antisense__chr2:264820..264934,-__2812.1.0.0	77	89	+	9.32787	9.84e-05	0.0589	CGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	99	111	+	9.32787	9.84e-05	0.0589	TGCCCAGGAGGGC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:264820..264934,+__1382.1.0.0	26	38	-	9.32787	9.84e-05	0.0589	CGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.0	26	38	-	9.32787	9.84e-05	0.0589	CGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:264820..264934,+__1382.1.1.0	26	38	-	9.32787	9.84e-05	0.0589	CGCCAACAGGGCA
TFAP2A(var.3)	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:264820..264934,+__1382.1.2.1	26	38	-	9.32787	9.84e-05	0.0589	CGCCAACAGGGCA
TFAP2A(var.3)	FLIPPED__Lincrna.flip.antisense__chr22:29196597..29196711,-__2684.1.0.0	41	53	-	9.32787	9.84e-05	0.0589	GCCCGGCGGGGCG
E2F8	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.1	46	57	+	2.84146	9.84e-05	0.631	TTTCCCGCCGTT
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.1.0	46	57	+	2.84146	9.84e-05	0.631	TTTCCCGCCGTT
E2F8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.2.0	46	57	+	2.84146	9.84e-05	0.631	TTTCCCGCCGTT
E2F8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219433283..219433397,+__1562.1.0.0	46	57	+	2.84146	9.84e-05	0.631	TTTCCCGCCGTT
RORA	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	29	38	-	11.1685	9.84e-05	1	GAAAAGGTCA
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.flip.sense__chr3:194298867..194298981,-__2193.1.0.0	41	53	-	10.0328	9.84e-05	0.359	GAGGCTGCCAGCC
SMAD2::SMAD3::SMAD4	FLIPPED__Enhancer.flip.antisense__chr3:194298867..194298981,+__2590.1.0.0	62	74	+	10.0328	9.84e-05	0.359	GAGGCTGCCAGCC
SP4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:22233479..22233593,+__1739.1.0.0	19	35	-	2.4	9.84e-05	0.0364	CACACCCCTCCTACTAC
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	50	66	+	2.4	9.84e-05	0.0364	CGAGCCCCCCCCTCGTC
SP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.1.0	68	84	-	2.4	9.84e-05	0.0364	GCGGCTCCGCCTTCTCC
SP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:135248590..135248704,-__607.1.0.0	68	84	-	2.4	9.84e-05	0.0364	GCGGCTCCGCCTTCTCC
E2F6	FLIPPED__Lincrna.flip.antisense__chr13:48877802..48877916,+__2357.1.0.0	59	69	-	10.069	9.84e-05	0.0898	CCGCGGGAAAA
E2F6	WILDTYPE__Lincrna.flip.sense__chr13:48877802..48877916,-__269.1.0.0	46	56	+	10.069	9.84e-05	0.0898	CCGCGGGAAAA
POU3F3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:186435038..186435152,+__1074.1.0.0	31	43	+	10.23	9.84e-05	1	CAAATGCAAATGA
RREB1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr12:24715358..24715472,-__222.1.0.0	71	90	+	2.46789	9.84e-05	0.077	CACACAGACACACACACACA
Rfx1	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	1	14	+	9.2931	9.84e-05	0.337	GCCGGCAAGGCGAC
Rfx1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	101	114	-	9.2931	9.84e-05	0.337	GCCGGCAAGGCGAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	101	114	-	9.2931	9.84e-05	0.337	GCCGGCAAGGCGAC
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	27	40	-	7.77586	9.84e-05	0.0421	GGCCCCGCCTTCCC
KLF14	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	44	57	-	7.77586	9.84e-05	0.0421	GGCCCCGCCTTCCC
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	58	71	+	7.77586	9.84e-05	0.0421	GGCCCCGCCTTCCC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.1.0	53	66	-	7.77586	9.84e-05	0.0421	GATCCCACCCACCA
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.1	53	66	-	7.77586	9.84e-05	0.0421	GATCCCACCCACCA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.0.0	53	66	-	7.77586	9.84e-05	0.0421	GATCCCACCCACCA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:34759793..34759907,+__1667.1.2.0	53	66	-	7.77586	9.84e-05	0.0421	GATCCCACCCACCA
Nr1h3::Rxra	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	57	75	-	9.95161	9.84e-05	0.724	TGACACGTGGTGCCTTCAG
Nr1h3::Rxra	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	40	58	+	9.95161	9.84e-05	0.724	TGACACGTGGTGCCTTCAG
ZIC1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.1.0	27	40	-	5.17021	9.84e-05	0.106	GAACCCCAGCTGCT
ZIC1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:219146811..219146925,-__1560.1.0.0	27	40	-	5.17021	9.84e-05	0.106	GAACCCCAGCTGCT
Hand1::Tcf3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	22	31	-	11	9.84e-05	1	CATCTGGCTA
Hand1::Tcf3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	22	31	-	11	9.84e-05	1	CATCTGGCTA
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	3	18	+	-11.4231	9.84e-05	0.33	CGACGCCCAGCGACCA
GLIS1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	39	54	+	-11.4231	9.84e-05	0.33	CGACGCCCAGCGACCA
CTCF	FLIPPED__mrna.flip.antisense__chr1:90098503..90098617,-__2769.1.0.0	35	53	-	7.80328	9.84e-05	0.137	CGGGCGCTGGGCGGCGCTG
CTCF	WILDTYPE__mrna.flip.sense__chr1:90098503..90098617,+__1141.1.0.0	62	80	+	7.80328	9.84e-05	0.137	CGGGCGCTGGGCGGCGCTG
CTCF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	68	86	-	7.80328	9.84e-05	0.137	TTTCAAGGAGGTGGTACTA
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.0	4	14	-	10.4909	9.84e-05	0.0805	GGATTTCCGCC
ELK4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.2.1	4	14	-	10.4909	9.84e-05	0.0805	GGATTTCCGCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.0.0	4	14	-	10.4909	9.84e-05	0.0805	GGATTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44676829..44676943,-__1532.1.1.0	4	14	-	10.4909	9.84e-05	0.0805	GGATTTCCGCC
ELK4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.1.0	64	74	+	10.4909	9.84e-05	0.0805	TCGCTTCCTCC
ELK4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:30445916..30446030,-__1586.1.0.0	64	74	+	10.4909	9.84e-05	0.0805	TCGCTTCCTCC
ELK4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.1.0	98	108	+	10.4909	9.84e-05	0.0805	AGACTTCCGCT
ELK4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr14:101159663..101159777,+__1948.1.0.0	98	108	+	10.4909	9.84e-05	0.0805	AGACTTCCGCT
GCM2	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	94	103	+	10.6066	9.85e-05	0.727	GATGCGGGGT
TFAP4	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.0.0	61	70	-	9.83636	9.85e-05	0.655	AGCAGCTGGT
TFAP4	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:15727960..15728074,+__1725.1.1.0	61	70	-	9.83636	9.85e-05	0.655	AGCAGCTGGT
E2F7	WILDTYPE__mrna.noflip.NA__chr12:49182837..49182951,-__1400.1.0.0	28	41	-	-6.32787	9.85e-05	1	ACTCCCCGCCTTAA
ETV3	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	10.5915	9.85e-05	0.183	GCCGGATGCG
ETV3	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	10.5915	9.85e-05	0.183	GCCGGATGCG
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.1.0	25	42	+	-16.2763	9.85e-05	0.0567	GGAGGGAGGTGGGGCTGG
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:149353715..149353829,-__735.1.0.0	25	42	+	-16.2763	9.85e-05	0.0567	GGAGGGAGGTGGGGCTGG
CEBPB	WILDTYPE__Antisense.noflip.NA__chrX:102942115..102942229,+__925.1.0.0	86	95	-	10.46	9.85e-05	0.828	GTTGCGCCAC
TP53	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.1	96	113	-	5.44898	9.85e-05	1	AACAAGTGGCGGCTTGCA
TP53	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.1.0	96	113	-	5.44898	9.85e-05	1	AACAAGTGGCGGCTTGCA
TP53	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:74091836..74091950,-__2231.1.0.0	96	113	-	5.44898	9.85e-05	1	AACAAGTGGCGGCTTGCA
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	12	28	+	-7.61818	9.85e-05	1	CGGGTCACACGCTGTCA
Rarg(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	12	28	+	-7.61818	9.85e-05	1	CGGGTCACACGCTGTCA
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.1.0	15	27	+	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957771..109957885,-__2143.1.0.0	15	27	+	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
NFKB2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.0.0	20	32	-	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr11:109957839..109957953,+__1850.1.1.0	20	32	-	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr11:109957839..109957953,-__2849.1.0.0	83	95	+	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
NFKB2	FLIPPED__Enhancer.flip.antisense__chr11:109957771..109957885,+__2565.1.0.0	88	100	-	7.06061	9.85e-05	0.265	AGGGGAGATCCCA
Myog	WILDTYPE__Antisense.noflip.NA__chr7:100660867..100660981,-__764.1.0.0	24	34	+	10.7347	9.85e-05	0.19	CGCAGCTGAGT
Myog	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	21	31	-	10.7347	9.85e-05	0.19	CGCAGCTGTGA
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	94	+	10.7347	9.85e-05	0.19	CGCAGCTGTGA
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	94	+	10.7347	9.85e-05	0.19	CGCAGCTGTGA
Myog	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	94	+	10.7347	9.85e-05	0.19	CGCAGCTGTGA
Myog	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	94	+	10.7347	9.85e-05	0.19	CGCAGCTGTGA
MAFK	WILDTYPE__Enhancer.flip.sense__chr22:31631071..31631185,-__2189.1.0.0	31	45	-	10.3333	9.85e-05	1	TTGTGTCAGCACTGA
MAFK	FLIPPED__Enhancer.flip.antisense__chr22:31631071..31631185,+__2587.1.0.0	70	84	+	10.3333	9.85e-05	1	TTGTGTCAGCACTGA
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.0.0	1	13	+	8.72414	9.85e-05	0.0586	CCCCGCCCGGGGA
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:147525608..147525722,+__1095.1.1.0	1	13	+	8.72414	9.85e-05	0.0586	CCCCGCCCGGGGA
TFAP2C(var.3)	FLIPPED__Antisense.flip.antisense__chr5:131705263..131705377,+__2403.1.0.0	22	34	+	8.72414	9.85e-05	0.0586	TCCCCAGCAGGCT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	43	55	-	8.72414	9.85e-05	0.0586	AGCCAGCGGGGCT
TFAP2C(var.3)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.0.0	81	93	-	8.72414	9.85e-05	0.0586	TCCCCAGCAGGCT
JUN	WILDTYPE__Lincrna.flip.sense__chr17:58603591..58603705,+__368.1.0.0	16	28	+	9.20408	9.85e-05	0.358	GTCATGACGTAAG
JUN	FLIPPED__mrna.flip.antisense__chr17:58603568..58603682,+__2530.1.0.0	39	51	+	9.20408	9.85e-05	0.358	GTCATGACGTAAG
JUN	WILDTYPE__mrna.flip.sense__chr17:58603568..58603682,-__1319.1.0.0	64	76	-	9.20408	9.85e-05	0.358	GTCATGACGTAAG
JUN	FLIPPED__Lincrna.flip.antisense__chr17:58603591..58603705,-__2658.1.0.0	87	99	-	9.20408	9.85e-05	0.358	GTCATGACGTAAG
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.1	54	68	+	10.2523	9.85e-05	0.19	GTAAGAAAGAGGCCA
Pparg::Rxra	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.1.0	54	68	+	10.2523	9.85e-05	0.19	GTAAGAAAGAGGCCA
Pparg::Rxra	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr8:39797592..39797706,+__1984.1.0.0	54	68	+	10.2523	9.85e-05	0.19	GTAAGAAAGAGGCCA
Pparg::Rxra	FLIPPED__Enhancer.flip.antisense__chr22:50978102..50978216,+__2589.1.0.0	65	79	+	10.2523	9.85e-05	0.19	GTGAGGCAGAAGTAA
Pparg::Rxra	WILDTYPE__Enhancer.flip.sense__chr22:50978102..50978216,-__2191.1.0.0	36	50	-	10.2523	9.85e-05	0.19	GTGAGGCAGAAGTAA
Pparg::Rxra	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr11:207356..207470,-__1460.1.1.0	68	82	-	10.2523	9.85e-05	0.19	CGCGGGGAAAGGGCT
Pparg::Rxra	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr11:207356..207470,-__1460.1.2.1	68	82	-	10.2523	9.85e-05	0.19	CGCGGGGAAAGGGCT
ZBTB18	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	31	43	+	8.75714	9.85e-05	0.769	CAGACAGAGGTGG
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	72	84	-	8.75714	9.85e-05	0.769	CAGACAGAGGTGG
ELF5	WILDTYPE__Enhancer.noflip.NA__chr11:61740281..61740395,+__2009.1.0.0	21	31	+	10.9091	9.85e-05	0.164	AGCAGGAAATT
ELF5	WILDTYPE__Lincrna.noflip.NA__chr11:45376959..45377073,+__177.1.0.0	100	110	+	10.9091	9.85e-05	0.164	ATGAGGAAGTC
ELF5	WILDTYPE__Enhancer.noflip.NA__chr11:61740207..61740321,-__2302.1.0.0	10	20	-	10.9091	9.85e-05	0.164	AGCAGGAAATT
ELF5	WILDTYPE__Antisense.noflip.NA__chr1:100435456..100435570,-__1.1.0.0	52	62	-	10.9091	9.85e-05	0.164	AGGCGGAAGCC
Crem	WILDTYPE__Antisense.flip.sense__chr3:128208007..128208121,+__544.1.0.0	18	27	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.1.0	26	35	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:179278623..179278737,+__414.1.0.0	26	35	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__Enhancer.noflip.NA__chr20:2191927..2192041,+__1995.1.0.0	20	29	-	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__Enhancer.noflip.NA__chr20:2191874..2191988,-__2288.1.0.0	33	42	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	26	35	-	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.1	43	52	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.1.0	43	52	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:102024009..102024123,+__924.1.0.0	43	52	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	46	55	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr19:54960298..54960412,-__2783.1.0.0	52	61	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.1.0	54	63	-	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:54960298..54960412,+__1172.1.0.0	54	63	-	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	60	69	-	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__mrna.noflip.NA__chr3:187871524..187871638,+__1075.1.0.0	71	80	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	80	89	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	WILDTYPE__Antisense.noflip.NA__chr3:8543313..8543427,-__593.1.0.0	93	102	+	11.3115	9.85e-05	0.342	CCTGACGTCA
Crem	FLIPPED__Antisense.flip.antisense__chr3:128208007..128208121,-__2688.1.0.0	88	97	-	11.3115	9.85e-05	0.342	CCTGACGTCA
KLF16	WILDTYPE__Lincrna.noflip.NA__chr2:20068568..20068682,+__418.1.0.0	19	29	+	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	25	35	+	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509790..2509904,-__2842.1.0.0	28	38	-	9.75862	9.85e-05	0.0273	CCCACACCCGC
KLF16	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:109642741..109642855,+__3.1.0.0	30	40	-	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	WILDTYPE__Antisense.noflip.NA__chr6:15248791..15248905,-__736.1.0.0	37	47	-	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	44	54	-	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509806..2509920,-__2129.1.0.0	44	54	-	9.75862	9.85e-05	0.0273	CCCACACCCGC
KLF16	FLIPPED__Enhancer.flip.antisense__chr1:2509806..2509920,+__2558.1.0.0	61	71	+	9.75862	9.85e-05	0.0273	CCCACACCCGC
KLF16	WILDTYPE__Lincrna.noflip.NA__chr12:13153284..13153398,+__220.1.0.0	58	68	-	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	FLIPPED__Lincrna.flip.antisense__chr1:109642741..109642855,-__2611.1.0.0	75	85	+	9.75862	9.85e-05	0.0273	TCTCCGCCCCC
KLF16	WILDTYPE__Enhancer.flip.sense__chr1:2509790..2509904,+__1836.1.0.0	77	87	+	9.75862	9.85e-05	0.0273	CCCACACCCGC
TFAP2B(var.2)	WILDTYPE__mrna.noflip.NA__chr11:124670529..124670643,-__982.1.0.0	36	46	-	10.1818	9.85e-05	0.0727	AGCCCCCGGGA
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.1	54	64	+	10.1818	9.85e-05	0.0727	AGCCTGCGGGG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.1.0	54	64	+	10.1818	9.85e-05	0.0727	AGCCTGCGGGG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526143..32526257,-__1273.1.0.0	54	64	+	10.1818	9.85e-05	0.0727	AGCCTGCGGGG
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.1.0	69	79	+	10.1818	9.85e-05	0.0727	AGCCTGCGGGG
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:32526158..32526272,-__1288.1.0.0	69	79	+	10.1818	9.85e-05	0.0727	AGCCTGCGGGG
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.0.0	30	40	-	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101801..90101915,-__2227.1.1.0	30	40	-	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	14	24	+	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	14	24	+	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	76	86	+	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.1.0	86	96	+	10.6596	9.85e-05	0.29	GATTAGTCATT
FOS	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:90101790..90101904,+__1934.1.0.0	86	96	+	10.6596	9.85e-05	0.29	GATTAGTCATT
EGR4	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	29	44	+	9.54545	9.85e-05	0.042	GGCCGCGCACGCCCCC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.1.0	32	47	+	9.54545	9.85e-05	0.042	TTCCTCCCTCCCCTTA
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.1	34	49	+	9.54545	9.85e-05	0.042	CTGCCCCCACCCACGC
EGR4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr1:93811312..93811426,-__98.1.2.0	34	49	+	9.54545	9.85e-05	0.042	CTGCCCCCACCCACGC
HES7	WILDTYPE__mrna.noflip.NA__chr19:663149..663263,-__1384.1.0.0	20	31	+	1.96552	9.85e-05	0.225	CCCCGCGTGCCG
SPI1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.0.0	50	63	+	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
SPI1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr15:88120080..88120194,+__336.1.2.0	50	63	+	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
SPI1	FLIPPED__Enhancer.flip.antisense__chr19:18526347..18526461,-__2868.1.0.0	39	52	-	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
SPI1	FLIPPED__Enhancer.flip.antisense__chr19:18526355..18526469,+__2584.1.0.0	55	68	+	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
SPI1	WILDTYPE__Enhancer.flip.sense__chr19:18526355..18526469,-__2182.1.0.0	47	60	-	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
SPI1	WILDTYPE__Enhancer.flip.sense__chr19:18526347..18526461,+__1889.1.0.0	63	76	+	1.4	9.86e-05	0.277	AGGAAGAGGAAGAG
TCF4	FLIPPED__Enhancer.flip.antisense__chr2:241796855..241796969,+__2607.1.0.0	22	31	-	11.102	9.86e-05	0.44	CGCAGCTGTG
TCF4	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.0.0	84	93	+	11.102	9.86e-05	0.44	CGCAGCTGTG
TCF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.1.0	84	93	+	11.102	9.86e-05	0.44	CGCAGCTGTG
TCF4	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.0	84	93	+	11.102	9.86e-05	0.44	CGCAGCTGTG
TCF4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr2:241796855..241796969,-__2250.1.2.1	84	93	+	11.102	9.86e-05	0.44	CGCAGCTGTG
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	88	101	-	10.0645	9.86e-05	0.528	TGTCCTAAAATGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	88	101	-	10.0645	9.86e-05	0.528	TGTCCTAAAATGCA
Bcl6	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.1.0	19	32	+	10.0645	9.86e-05	0.528	TGTCCTAAAATGCA
Bcl6	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137769..160137883,+__1972.1.0.0	19	32	+	10.0645	9.86e-05	0.528	TGTCCTAAAATGCA
TBP	WILDTYPE__Lincrna.flip.sense__chr3:169482795..169482909,-__565.1.0.0	24	38	-	10.6528	9.86e-05	0.756	TTATAAAGGGAGCGG
TBP	FLIPPED__Lincrna.flip.antisense__chr3:169482795..169482909,+__2393.1.0.0	77	91	+	10.6528	9.86e-05	0.756	TTATAAAGGGAGCGG
GLI2	WILDTYPE__mrna.noflip.NA__chr7:26241289..26241403,+__1403.1.0.0	14	25	-	9.58621	9.86e-05	0.331	CCGCCCACGCCG
GLI2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.0.0	71	82	-	9.58621	9.86e-05	0.331	GAGACCACCAAC
GLI2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:132320782..132320896,+__839.1.1.0	71	82	-	9.58621	9.86e-05	0.331	GAGACCACCAAC
GLI2	WILDTYPE__Antisense.noflip.NA__chr12:49392067..49392181,+__233.1.0.0	21	32	+	9.58621	9.86e-05	0.331	CCGCCCACGCCG
GLI2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	54	65	+	9.58621	9.86e-05	0.331	CCGCCCACGCCG
GLI2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	54	65	+	9.58621	9.86e-05	0.331	CCGCCCACGCCG
Nkx2-5(var.2)	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	43	53	-	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.1.0	81	91	-	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.1	81	91	-	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.0.0	81	91	-	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:131904224..131904338,+__1709.1.2.0	81	91	-	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.0.0	9	19	+	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:111722002..111722116,-__2306.1.1.0	9	19	+	10.8545	9.86e-05	0.736	CGCCTCTCCAG
Nkx2-5(var.2)	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:239882369..239882483,-__61.1.1.0	38	48	+	10.8545	9.86e-05	0.736	AGACACTCAGA
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.0.0	32	41	+	9.92857	9.86e-05	0.0309	TGGGCGGGCT
Klf4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:54826869..54826983,-__1223.1.1.0	32	41	+	9.92857	9.86e-05	0.0309	TGGGCGGGCT
Klf4	WILDTYPE__Enhancer.noflip.NA__chr15:101741631..101741745,-__2055.1.0.0	61	70	+	9.92857	9.86e-05	0.0309	TGGGCGGGCT
Klf4	FLIPPED__mrna.flip.antisense__chr7:54826869..54826983,+__2524.1.0.0	74	83	-	9.92857	9.86e-05	0.0309	TGGGCGGGCT
E2F4	WILDTYPE__Enhancer.noflip.NA__chr15:93363679..93363793,+__1765.1.0.0	14	24	+	9.82759	9.86e-05	0.0529	GCGCGGCAAAA
E2F4	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	25	35	+	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.1.0	16	26	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:66790065..66790179,-__1296.1.0.0	16	26	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	24	34	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	24	34	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	24	34	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	24	34	-	9.82759	9.86e-05	0.0529	GAGCGGGGAGG
E2F4	WILDTYPE__mrna.noflip.NA__chr12:56661030..56661144,+__1003.1.0.0	97	107	+	9.82759	9.86e-05	0.0529	CGGCGGGGACT
E2F4	WILDTYPE__Enhancer.noflip.NA__chr15:93363677..93363791,-__2058.1.0.0	89	99	-	9.82759	9.86e-05	0.0529	GCGCGGCAAAA
Pou2f3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	17	32	+	9.7561	9.86e-05	1	AATGATGCAAATGTCT
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	17	32	+	9.7561	9.86e-05	1	AATGATGCAAATGTCT
Pou2f3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.0	95	110	-	9.7561	9.86e-05	1	AATGATGCAAATGTCT
Pou2f3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218571..25218685,+__1959.1.2.1	95	110	-	9.7561	9.86e-05	1	AATGATGCAAATGTCT
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr5:87980740..87980854,-__715.1.0.0	12	21	+	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.0.0	24	33	+	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:2478447..2478561,+__1932.1.1.0	24	33	+	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE__Enhancer.noflip.NA__chr1:2478387..2478501,-__2225.1.0.0	22	31	-	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.0.0	56	65	+	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:2487730..2487844,+__1430.1.1.0	56	65	+	9.94495	9.86e-05	0.0565	CCCCTCCCAT
ZNF740	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	63	72	-	9.94495	9.86e-05	0.0565	CGCCCCCCAT
ZIC3	FLIPPED__Antisense.flip.antisense__chr15:50647602..50647716,-__2649.1.0.0	43	57	+	7.1	9.86e-05	0.13	CCACCCCCGCTGCCG
ZIC3	WILDTYPE__Antisense.flip.sense__chr15:50647602..50647716,+__324.1.0.0	58	72	-	7.1	9.86e-05	0.13	CCACCCCCGCTGCCG
ZIC3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.1.0	81	95	+	7.1	9.86e-05	0.13	GACGCCCTGCGGCCG
ZIC3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:69080561..69080675,-__249.1.0.0	81	95	+	7.1	9.86e-05	0.13	GACGCCCTGCGGCCG
Nr5a2	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	17	31	-	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.3.0	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.1	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	84	98	+	9.32759	9.86e-05	0.506	GTGCTGAAGGCCTGT
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.0.0	27	41	+	9.4697	9.86e-05	0.133	GCCTCGTGAGCTTGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:43019688..43019802,-__1574.1.1.0	27	41	+	9.4697	9.86e-05	0.133	GCCTCGTGAGCTTGG
PKNOX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.0.0	3	14	+	1.65574	9.86e-05	0.718	TGGCTGGTGTAA
PKNOX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:160137774..160137888,-__2265.1.1.0	3	14	+	1.65574	9.86e-05	0.718	TGGCTGGTGTAA
MAFG	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.0.0	21	41	+	9.04082	9.86e-05	1	CGGCTGCTGAGTCATCCTGCT
MAFG	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:90610184..90610298,-__717.1.1.0	21	41	+	9.04082	9.86e-05	1	CGGCTGCTGAGTCATCCTGCT
EGR3	WILDTYPE__Antisense.noflip.NA__chr5:74632686..74632800,-__702.1.0.0	32	46	-	5.17241	9.86e-05	0.0422	TATCGCCTCCGCCTA
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.1.0	39	52	+	-0.818182	9.86e-05	0.587	GGGTTTGGAGGTTA
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878296..152878410,+__1798.1.0.0	39	52	+	-0.818182	9.86e-05	0.587	GGGTTTGGAGGTTA
RXRB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.0.0	60	73	-	-0.818182	9.86e-05	0.587	GGGTTTGGAGGTTA
RXRB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:152878293..152878407,-__2091.1.1.0	60	73	-	-0.818182	9.86e-05	0.587	GGGTTTGGAGGTTA
EMX2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr9:12814341..12814455,-__891.1.1.0	17	26	+	10.9362	9.86e-05	1	AGTAATTAAG
TFAP2B(var.3)	FLIPPED__mrna.flip.antisense__chr2:139259260..139259374,-__2784.1.0.0	20	32	+	8.85246	9.87e-05	0.0653	GCCCGCGAGGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.flip.sense__chr8:94712670..94712784,-__882.1.0.0	24	36	-	8.85246	9.87e-05	0.0653	TGCCGCGGCGGCG
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr7:1200018..1200132,+__772.1.0.0	52	64	+	8.85246	9.87e-05	0.0653	AGCCGGGCGGGCG
TFAP2B(var.3)	FLIPPED__Antisense.flip.antisense__chr8:94712670..94712784,+__2440.1.0.0	79	91	+	8.85246	9.87e-05	0.0653	TGCCGCGGCGGCG
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.0.0	83	95	-	8.85246	9.87e-05	0.0653	GCCCGCGAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:139259260..139259374,+__1174.1.1.0	83	95	-	8.85246	9.87e-05	0.0653	GCCCGCGAGGGCG
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	98	110	+	8.85246	9.87e-05	0.0653	TGCCCGGGTGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	98	110	+	8.85246	9.87e-05	0.0653	TGCCCGGGTGGCC
GLIS3	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	41	54	-	2.42424	9.87e-05	0.398	CACCCCCCACCCCC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:7746118..7746232,+__2011.1.1.0	59	78	-	2.45872	9.87e-05	0.0771	CCCCCCCGCCCCCCATACAA
TFAP2A	WILDTYPE__Antisense.flip.sense__chr5:137224973..137225087,-__661.1.0.0	5	15	+	10.7455	9.87e-05	0.059	AGCCCCCAGCT
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	53	63	+	10.7455	9.87e-05	0.059	ACCCCGCGGCG
TFAP2A	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	53	63	+	10.7455	9.87e-05	0.059	ACCCCGCGGCG
TFAP2A	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	53	63	+	10.7455	9.87e-05	0.059	ACCCCGCGGCG
TFAP2A	FLIPPED__Antisense.flip.antisense__chr5:137224973..137225087,+__2405.1.0.0	100	110	-	10.7455	9.87e-05	0.059	AGCCCCCAGCT
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:65187481..65187595,-__2851.1.0.0	12	22	-	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr22:39350183..39350297,-__2872.1.0.0	26	36	-	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	FLIPPED__Antisense.flip.antisense__chr2:113993037..113993151,-__2662.1.0.0	46	56	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:65187510..65187624,-__2145.1.0.0	41	51	-	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	FLIPPED__Enhancer.flip.antisense__chr11:65187510..65187624,+__2567.1.0.0	64	74	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE__Enhancer.noflip.NA__chr2:28583861..28583975,-__2251.1.0.0	66	76	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE__Antisense.flip.sense__chr2:113993037..113993151,+__392.1.0.0	59	69	-	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.1.0	79	89	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr22:39350183..39350297,+__1897.1.0.0	79	89	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
Klf1	WILDTYPE__Enhancer.flip.sense__chr11:65187481..65187595,+__1852.1.0.0	93	103	+	9.9697	9.87e-05	0.0611	AGCTCCACCCC
SP3	WILDTYPE__Enhancer.noflip.NA__chr10:74057103..74057217,-__2292.1.0.0	29	39	+	10.4878	9.87e-05	0.0289	GCCCTGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	31	41	+	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	31	41	+	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	31	41	+	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	31	41	+	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.0.0	66	76	+	10.4878	9.87e-05	0.0289	GCCCTGCCCAC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:46187043..46187157,-__937.1.1.0	66	76	+	10.4878	9.87e-05	0.0289	GCCCTGCCCAC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.1	25	35	-	10.4878	9.87e-05	0.0289	CCAACGCCCAG
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.1.0	25	35	-	10.4878	9.87e-05	0.0289	CCAACGCCCAG
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:37432813..37432927,-__1590.1.0.0	25	35	-	10.4878	9.87e-05	0.0289	CCAACGCCCAG
SP3	WILDTYPE__Enhancer.noflip.NA__chr10:74057141..74057255,+__1999.1.0.0	38	48	-	10.4878	9.87e-05	0.0289	GCCCTGCCCAC
SP3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.0	44	54	-	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.0.0	44	54	-	10.4878	9.87e-05	0.0289	GCCCCGCACCC
SP3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:41940330..41940444,-__1606.1.1.1	44	54	-	10.4878	9.87e-05	0.0289	GCCCCGCACCC
Rarb(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.0.0	75	91	+	-4.06061	9.87e-05	0.861	GCGTCACAGGAACTTCA
Rarb(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr15:51973620..51973734,+__1324.1.1.0	75	91	+	-4.06061	9.87e-05	0.861	GCGTCACAGGAACTTCA
Nfe2l2	WILDTYPE__Enhancer.flip.sense__chr1:150586105..150586219,+__1830.1.0.0	51	65	+	8.90909	9.87e-05	0.372	AAGGATGACTCAGAC
Nfe2l2	FLIPPED__Enhancer.flip.antisense__chr1:150586105..150586219,-__2836.1.0.0	50	64	-	8.90909	9.87e-05	0.372	AAGGATGACTCAGAC
TP63	WILDTYPE__Enhancer.noflip.NA__chr6:30840570..30840684,-__2107.1.0.0	80	97	+	-3.82759	9.87e-05	1	GGAAAGCTGGAACTTGTA
NFATC3	WILDTYPE__mrna.noflip.NA__chr3:196366519..196366633,+__1380.1.0.0	80	89	+	10.6566	9.87e-05	1	AGTTTCCGTC
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:121302190..121302304,-__1298.1.0.0	49	65	-	8.93878	9.87e-05	0.405	GGAGGAGGAGGAGGGCA
RARA::RXRA	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	83	99	-	8.93878	9.87e-05	0.405	AGAGCACCCGCAGTGCA
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.0.0	85	101	-	8.93878	9.87e-05	0.405	GGGGCAGGCAAGGGAGA
RARA::RXRA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr14:73712660..73712774,-__298.1.1.0	85	101	-	8.93878	9.87e-05	0.405	GGGGCAGGCAAGGGAGA
NRF1	WILDTYPE__mrna.noflip.NA__chr17:65989622..65989736,-__1342.1.0.0	38	48	+	9.07273	9.87e-05	0.0257	GCGCTGGCCCC
NRF1	FLIPPED__mrna.flip.antisense__chr1:113498933..113499047,+__2471.1.0.0	31	41	-	9.07273	9.87e-05	0.0257	GAGGGCGCGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.0.0	63	73	-	9.07273	9.87e-05	0.0257	GAGGGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:43971846..43971960,+__1523.1.1.0	63	73	-	9.07273	9.87e-05	0.0257	GAGGGCGCGCG
NRF1	WILDTYPE__mrna.flip.sense__chr1:113498933..113499047,-__1132.1.0.0	74	84	+	9.07273	9.87e-05	0.0257	GAGGGCGCGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.0	84	94	-	9.07273	9.87e-05	0.0257	GCGCTGGCCCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.0.0	84	94	-	9.07273	9.87e-05	0.0257	GCGCTGGCCCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.2.1	84	94	-	9.07273	9.87e-05	0.0257	GCGCTGGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:89753019..89753133,+__1514.1.1.0	84	94	-	9.07273	9.87e-05	0.0257	GCGCTGGCCCC
GCM1	WILDTYPE__Lincrna.flip.sense__chr4:142253733..142253847,-__610.1.0.0	23	33	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.0.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.2.1	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:31998921..31999035,+__627.1.1.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE__Enhancer.noflip.NA__chr12:10337162..10337276,+__1758.1.0.0	17	27	-	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	27	37	+	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	78	88	-	10.1429	9.87e-05	0.553	GATGTGGGTGG
GCM1	FLIPPED__Lincrna.flip.antisense__chr4:142253733..142253847,+__2398.1.0.0	82	92	-	10.1429	9.87e-05	0.553	GATGTGGGTGG
ESR1	WILDTYPE__Lincrna.noflip.NA__chr5:87974227..87974341,-__714.1.0.0	79	95	+	-1.89394	9.87e-05	0.514	CAGAGCACCCGGACCCG
HEY1	FLIPPED__Antisense.flip.antisense__chr2:3606196..3606310,-__2671.1.0.0	13	22	+	10.7091	9.87e-05	0.173	CGCACGTGGG
HEY1	FLIPPED__mrna.flip.antisense__chr16:69166472..69166586,-__2748.1.0.0	44	53	-	10.7091	9.87e-05	0.173	CGCACGTGGG
HEY1	WILDTYPE__mrna.flip.sense__chr16:69166472..69166586,+__1034.1.0.0	62	71	+	10.7091	9.87e-05	0.173	CGCACGTGGG
HEY1	WILDTYPE__Antisense.flip.sense__chr2:3606196..3606310,+__435.1.0.0	93	102	-	10.7091	9.87e-05	0.173	CGCACGTGGG
NFYB	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	53	67	-	9.63462	9.87e-05	0.242	ACAGCTGCCAATCAA
MEOX2	WILDTYPE__Enhancer.noflip.NA__chr3:15450866..15450980,-__2260.1.0.0	52	61	-	9.91089	9.87e-05	1	AGTCATTAAA
MEOX2	WILDTYPE__Lincrna.noflip.NA__chr6:132455088..132455202,+__731.1.0.0	70	79	-	9.91089	9.87e-05	1	AGTCATTAAA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	20	31	+	10.6545	9.87e-05	0.0585	TCCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.0.0	29	40	-	10.6545	9.87e-05	0.0585	CGCCGTAGGGCT
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:97667625..97667739,-__147.1.1.0	29	40	-	10.6545	9.87e-05	0.0585	CGCCGTAGGGCT
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.0.0	55	66	+	10.6545	9.87e-05	0.0585	CACCCTCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:111169954..111170068,+__1451.1.1.0	55	66	+	10.6545	9.87e-05	0.0585	CACCCTCGGCCG
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr10:97667625..97667739,+__2343.1.0.0	75	86	+	10.6545	9.87e-05	0.0585	CGCCGTAGGGCT
TFAP2A(var.2)	WILDTYPE__Antisense.noflip.NA__chr4:775570..775684,-__643.1.0.0	95	106	+	10.6545	9.87e-05	0.0585	ACCCCGCGGCCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	84	95	-	10.6545	9.87e-05	0.0585	TCCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	84	95	-	10.6545	9.87e-05	0.0585	TCCCCTCGGGGC
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr10:131909050..131909164,-__113.1.0.0	101	112	-	10.6545	9.87e-05	0.0585	ACCCTCCCGGCA
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.1.0	47	58	+	10.6182	9.87e-05	0.0953	CGGCTCAGGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126471..26126585,+__1973.1.0.0	47	58	+	10.6182	9.87e-05	0.0953	CGGCTCAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.2.0	47	58	+	10.6182	9.87e-05	0.0953	TCCCTGAGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:93195787..93195901,-__916.1.0.0	47	58	+	10.6182	9.87e-05	0.0953	TCCCTGAGGGCC
TFAP2B	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.0.0	67	78	-	10.6182	9.87e-05	0.0953	CGGCTCAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:26126481..26126595,-__2266.1.1.0	67	78	-	10.6182	9.87e-05	0.0953	CGGCTCAGGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.1.0	94	105	-	10.6182	9.87e-05	0.0953	CACCTCCAGGCG
TFAP2B	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.1	94	105	-	10.6182	9.87e-05	0.0953	CACCTCCAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.3.0	94	105	-	10.6182	9.87e-05	0.0953	CACCTCCAGGCG
TFAP2B	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:537447..537561,+__1466.1.0.0	94	105	-	10.6182	9.87e-05	0.0953	CACCTCCAGGCG
TFAP2B	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:537447..537561,+__1466.1.2.0	94	105	-	10.6182	9.87e-05	0.0953	CACCTCCAGGCG
OLIG3	WILDTYPE__mrna.noflip.NA__chr7:4998783..4998897,-__1275.1.0.0	47	56	+	10.8621	9.87e-05	1	ACCATCTGCT
OLIG3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	55	64	+	10.8621	9.87e-05	1	ACCATCTGCT
OLIG3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	55	64	+	10.8621	9.87e-05	1	ACCATCTGCT
Npas2	WILDTYPE__Lincrna.noflip.NA__chr7:93652038..93652152,+__822.1.0.0	102	111	+	10.9508	9.87e-05	0.354	ACCACGTGAA
PBX1	WILDTYPE__Antisense.noflip.NA__chr13:50656063..50656177,-__270.1.0.0	22	33	-	10.0816	9.87e-05	1	TCCTCATTCAAA
PBX1	FLIPPED__Antisense.flip.antisense__chr13:50656092..50656206,+__2358.1.0.0	53	64	+	10.0816	9.87e-05	1	TCCTCATTCAAA
PBX1	WILDTYPE__Antisense.flip.sense__chr13:50656092..50656206,-__271.1.0.0	51	62	-	10.0816	9.87e-05	1	TCCTCATTCAAA
YY2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	79	89	+	10.5152	9.87e-05	0.453	AGTCGCCATCT
YY2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	79	89	+	10.5152	9.87e-05	0.453	AGTCGCCATCT
YY2	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	82	92	+	10.5152	9.87e-05	0.453	TTTCGCCATGT
ELF4	FLIPPED__mrna.flip.antisense__chr10:1034322..1034436,-__2814.1.0.0	50	61	+	8.13115	9.87e-05	0.131	CTCCCGGAACTT
ELF4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.1.0	54	65	-	8.13115	9.87e-05	0.131	CTCCCGGAACTT
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:1034322..1034436,+__1440.1.0.0	54	65	-	8.13115	9.87e-05	0.131	CTCCCGGAACTT
RFX4	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	23	38	-	9.10606	9.88e-05	0.425	AGTAACCATAGCGGCT
RFX4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	77	92	+	9.10606	9.88e-05	0.425	AGTAACCATAGCGGCT
RFX4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	77	92	+	9.10606	9.88e-05	0.425	AGTAACCATAGCGGCT
MAX	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	-	11.5385	9.88e-05	0.332	GCCACGTGAG
MAX	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	-	11.5385	9.88e-05	0.332	GCCACGTGAG
MAX	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	-	11.5385	9.88e-05	0.332	GCCACGTGAG
SPDEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:119606468..119606582,+__1392.1.0.0	41	51	-	9.4	9.88e-05	0.282	GCCCGGAAGTC
SPDEF	WILDTYPE__Lincrna.noflip.NA__chr5:19142428..19142542,-__684.1.0.0	56	66	+	9.4	9.88e-05	0.282	AGCAGGATATG
Myb	WILDTYPE__Enhancer.flip.sense__chr4:122612130..122612244,+__1903.1.0.0	10	19	+	10.4262	9.88e-05	0.928	AAAACTGTCT
Myb	FLIPPED__Enhancer.flip.antisense__chr4:122612130..122612244,-__2877.1.0.0	96	105	-	10.4262	9.88e-05	0.928	AAAACTGTCT
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.0	71	83	+	10.7551	9.88e-05	0.202	GGCACCTGCGTGC
Myod1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.0.0	71	83	+	10.7551	9.88e-05	0.202	GGCACCTGCGTGC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.2.1	71	83	+	10.7551	9.88e-05	0.202	GGCACCTGCGTGC
Myod1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:46184858..46184972,+__1524.1.1.0	71	83	+	10.7551	9.88e-05	0.202	GGCACCTGCGTGC
Myod1	WILDTYPE__Lincrna.noflip.NA__chr17:20978781..20978895,+__358.1.0.0	89	101	+	10.7551	9.88e-05	0.202	TGCAGCTGGGCCT
Myod1	FLIPPED__Lincrna.flip.antisense__chr8:130587226..130587340,+__2432.1.0.0	96	108	+	10.7551	9.88e-05	0.202	CACACCTGTTTTG
Myod1	WILDTYPE__Lincrna.flip.sense__chr8:130587226..130587340,-__838.1.0.0	7	19	-	10.7551	9.88e-05	0.202	CACACCTGTTTTG
E2F6	WILDTYPE__Antisense.noflip.NA__chr3:18486414..18486528,+__568.1.0.0	40	50	+	10.0517	9.88e-05	0.0898	CGGCGGGAGCT
E2F6	WILDTYPE__Enhancer.noflip.NA__chr5:133801561..133801675,+__1908.1.0.0	101	111	+	10.0517	9.88e-05	0.0898	CGGCGGGAGCT
ZBTB18	WILDTYPE__Enhancer.noflip.NA__chr16:81515061..81515175,-__2166.1.0.0	39	51	+	8.74286	9.88e-05	0.769	CACGCAGATGCTC
ZBTB18	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.0.0	81	93	+	8.74286	9.88e-05	0.769	GAGCCGGATGTTT
ZBTB18	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:46722124..46722238,-__1463.1.1.0	81	93	+	8.74286	9.88e-05	0.769	GAGCCGGATGTTT
HSF1	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	64	76	+	5.85246	9.88e-05	1	TGCTAGAATGTCC
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.0.0	35	47	-	9.31148	9.88e-05	0.059	GGCCGTGAAGGCG
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:177001228..177001342,+__1552.1.1.0	35	47	-	9.31148	9.88e-05	0.059	GGCCGTGAAGGCG
Rarg(var.2)	WILDTYPE__Lincrna.noflip.NA__chr15:31521550..31521664,-__312.1.0.0	47	63	+	-7.63636	9.88e-05	1	GAGGTCTCCTGGGTACA
Rarg(var.2)	FLIPPED__mrna.flip.antisense__chr8:11351839..11351953,-__2826.1.0.0	90	106	+	-7.63636	9.88e-05	1	AAGTGCAACAGGGGCCC
Rarg(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.1.0	9	25	-	-7.63636	9.88e-05	1	AAGTGCAACAGGGGCCC
Rarg(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr8:11351839..11351953,+__1683.1.0.0	9	25	-	-7.63636	9.88e-05	1	AAGTGCAACAGGGGCCC
BCL6B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.1.0	17	33	+	-18.7714	9.88e-05	1	TGTTTGCCAGGAAAAAG
BCL6B	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.1	17	33	+	-18.7714	9.88e-05	1	TGTTTGCCAGGAAAAAG
BCL6B	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.0.0	17	33	+	-18.7714	9.88e-05	1	TGTTTGCCAGGAAAAAG
BCL6B	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:75015646..75015760,+__1728.1.2.0	17	33	+	-18.7714	9.88e-05	1	TGTTTGCCAGGAAAAAG
SP4	WILDTYPE__Enhancer.noflip.NA__chr3:196064436..196064550,-__2094.1.0.0	11	27	-	2.38182	9.88e-05	0.0365	GCGGCCCCTCCCAAGTG
SP4	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.1.0	13	29	-	2.38182	9.88e-05	0.0365	GCAGCCGCGCCCCGCCC
SP4	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr16:89724164..89724278,+__1513.1.0.0	13	29	-	2.38182	9.88e-05	0.0365	GCAGCCGCGCCCCGCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr3:196064458..196064572,+__1801.1.0.0	66	82	+	2.38182	9.88e-05	0.0365	GCGGCCCCTCCCAAGTG
SP4	FLIPPED__mrna.flip.antisense__chr16:89724164..89724278,-__2820.1.0.0	86	102	+	2.38182	9.88e-05	0.0365	GCAGCCGCGCCCCGCCC
SP4	WILDTYPE__Enhancer.noflip.NA__chr7:111722055..111722169,+__2013.1.0.0	88	104	+	2.38182	9.88e-05	0.0365	TTAGCTCCGCACCTGTC
GLIS2	FLIPPED__mrna.flip.antisense__chr7:27135572..27135686,+__2523.1.0.0	63	76	-	7.14754	9.88e-05	0.189	GCCCCCCCTCTTGC
GLIS2	FLIPPED__Antisense.flip.antisense__chr15:41576126..41576240,-__2647.1.0.0	84	97	-	7.14754	9.88e-05	0.189	CAGCCCCAGCGGCG
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.0.0	18	31	+	7.14754	9.88e-05	0.189	CAGCCCCAGCGGCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:41576126..41576240,+__317.1.1.0	18	31	+	7.14754	9.88e-05	0.189	CAGCCCCAGCGGCG
GLIS2	WILDTYPE__mrna.flip.sense__chr7:27135572..27135686,-__1222.1.0.0	39	52	+	7.14754	9.88e-05	0.189	GCCCCCCCTCTTGC
GLIS2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.0.0	61	74	+	7.14754	9.88e-05	0.189	CAGCCCCAGCGGCG
GLIS2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:41576083..41576197,+__316.1.1.0	61	74	+	7.14754	9.88e-05	0.189	CAGCCCCAGCGGCG
HIC2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	16	24	+	10.6727	9.89e-05	0.459	ATGCCCCCT
HIC2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.1.0	16	24	+	10.6727	9.89e-05	0.459	ATGCCCCCT
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.0.0	8	18	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.1	8	18	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.1.0	8	18	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.3.0	8	18	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:37064191..37064305,+__381.1.2.0	8	18	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.4.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.6.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.5.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	28	38	+	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	FLIPPED__mrna.flip.antisense__chr19:37064159..37064273,+__2493.1.0.0	40	50	+	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.10.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.9.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.8.0	33	43	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.1.0	37	47	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:61560036..61560150,-__1468.1.0.0	37	47	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	64	74	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	64	74	-	10.1148	9.89e-05	0.0794	CAGGAAGCAGG
Gabpa	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.0.0	65	75	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.0	65	75	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr19:37064159..37064273,-__1171.1.1.1	65	75	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
Gabpa	FLIPPED__Antisense.flip.antisense__chr19:37064191..37064305,-__2661.1.0.0	97	107	-	10.1148	9.89e-05	0.0794	CCGGAAAAGGA
EWSR1-FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	43	60	-	-16.2895	9.89e-05	0.0568	GGAAGTGGAGAAGCGAGA
EWSR1-FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	43	60	-	-16.2895	9.89e-05	0.0568	GGAAGTGGAGAAGCGAGA
IRF2	WILDTYPE__Lincrna.noflip.NA__chr5:77656156..77656270,-__704.1.0.0	45	62	+	3.79817	9.89e-05	0.673	GGGAACTGAAAGCGATGA
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.1.0	38	46	+	10.3878	9.89e-05	1	CATGCTAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453865..69453979,+__1940.1.0.0	38	46	+	10.3878	9.89e-05	1	CATGCTAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.0.0	48	56	-	10.3878	9.89e-05	1	CATGCTAAT
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:69453844..69453958,-__2233.1.1.0	48	56	-	10.3878	9.89e-05	1	CATGCTAAT
POU3F4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.1.0	61	69	-	10.3878	9.89e-05	1	CATGCTAAT
POU3F4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	61	69	-	10.3878	9.89e-05	1	CATGCTAAT
SPIC	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.0	8	21	+	10.2113	9.89e-05	0.317	ATAAAGAGAAAGTG
SPIC	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr1:145076059..145076173,-__951.1.2.1	8	21	+	10.2113	9.89e-05	0.317	ATAAAGAGAAAGTG
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.1.0	21	30	-	10.4098	9.89e-05	0.389	CACAGCTGCC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.0.0	21	30	-	10.4098	9.89e-05	0.389	CACAGCTGCC
ID4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.1	21	30	-	10.4098	9.89e-05	0.389	CACAGCTGCC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32034427..32034541,-__1601.1.2.0	21	30	-	10.4098	9.89e-05	0.389	CACAGCTGCC
ID4	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	33	42	-	10.4098	9.89e-05	0.389	CACAGCTGTC
ID4	WILDTYPE__mrna.noflip.NA__chr5:112630600..112630714,-__1320.1.0.0	52	61	-	10.4098	9.89e-05	0.389	CACAGCTGTC
ID4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	98	107	-	10.4098	9.89e-05	0.389	TTCACCTGTC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	98	107	-	10.4098	9.89e-05	0.389	TTCACCTGTC
ID4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	98	107	-	10.4098	9.89e-05	0.389	TTCACCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	98	107	-	10.4098	9.89e-05	0.389	TTCACCTGTC
ID4	WILDTYPE__Enhancer.noflip.NA__chr1:26678237..26678351,+__1742.1.0.0	33	42	+	10.4098	9.89e-05	0.389	TTCACCTGCC
ID4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	73	82	+	10.4098	9.89e-05	0.389	CACAGCTGTC
ID4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	73	82	+	10.4098	9.89e-05	0.389	CACAGCTGTC
XBP1	FLIPPED__mrna.flip.antisense__chr3:45017656..45017770,-__2811.1.0.0	21	34	+	8.90385	9.89e-05	0.529	AGCCGCACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.0.0	39	52	-	8.90385	9.89e-05	0.529	CATGCCACGCCAGC
XBP1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:43312058..43312172,-__75.1.1.0	39	52	-	8.90385	9.89e-05	0.529	CATGCCACGCCAGC
XBP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	81	94	-	8.90385	9.89e-05	0.529	AGCCGCACGTCATC
XBP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.0.0	81	94	-	8.90385	9.89e-05	0.529	AGCCGCACGTCATC
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:65683278..65683392,+__1756.1.0.0	22	32	+	8.95745	9.89e-05	0.288	CATGACTCAGC
JUND	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	57	67	-	8.95745	9.89e-05	0.288	CATGACTCAGC
SP2	WILDTYPE__Antisense.flip.sense__chr2:61372069..61372183,-__440.1.0.0	33	47	+	9.53448	9.89e-05	0.0197	GCCGCGCCCCATCGG
SP2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:153939883..153939997,+__954.1.0.0	42	56	+	9.53448	9.89e-05	0.0197	ACCCCTCCCTTTAGG
SP2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:153939883..153939997,+__954.1.1.0	42	56	+	9.53448	9.89e-05	0.0197	ACCCCTCCCTTTAGG
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.1.0	33	47	-	9.53448	9.89e-05	0.0197	GTTCCTCCTCAGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803065..2803179,+__1905.1.0.0	33	47	-	9.53448	9.89e-05	0.0197	GTTCCTCCTCAGCCT
SP2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.0.0	56	70	+	9.53448	9.89e-05	0.0197	GTTCCTCCTCAGCCT
SP2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr4:2803053..2803167,-__2198.1.1.0	56	70	+	9.53448	9.89e-05	0.0197	GTTCCTCCTCAGCCT
SP2	FLIPPED__mrna.flip.antisense__chr1:153939883..153939997,-__2738.1.0.0	59	73	-	9.53448	9.89e-05	0.0197	ACCCCTCCCTTTAGG
SP2	FLIPPED__Antisense.flip.antisense__chr2:61372069..61372183,+__2382.1.0.0	68	82	-	9.53448	9.89e-05	0.0197	GCCGCGCCCCATCGG
SP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.0.0	91	105	+	9.53448	9.89e-05	0.0197	CCTCCGCCTTCAGAC
SP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr21:37802543..37802657,+__504.1.1.0	91	105	+	9.53448	9.89e-05	0.0197	CCTCCGCCTTCAGAC
NRL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.0.0	9	19	-	10.4038	9.89e-05	0.869	CTCATGCTGAC
NRL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:87754921..87755035,+__450.1.1.0	9	19	-	10.4038	9.89e-05	0.869	CTCATGCTGAC
FIGLA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.1.0	89	98	+	11.1034	9.89e-05	0.859	GACACCTGTG
FIGLA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:194868496..194868610,+__572.1.0.0	89	98	+	11.1034	9.89e-05	0.859	GACACCTGTG
Neurog1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:20017419..20017533,-__117.1.0.0	25	34	-	9.93407	9.89e-05	1	ACCATCTGTC
Foxa2	WILDTYPE__Antisense.noflip.NA__chr11:128565847..128565961,-__165.1.0.0	1	12	-	10.58	9.89e-05	1	TGTGTACCCAGG
RREB1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:91260318..91260432,-__338.1.0.0	64	83	-	2.44954	9.89e-05	0.0771	CTCTAAAACACCAAAAACAA
ZBTB7C	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	14	25	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE__Lincrna.noflip.NA__chr8:11204974..11205088,-__828.1.0.0	18	29	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.5.0	35	46	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	35	46	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.0.0	35	46	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.1.0	35	46	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr4:100867848..100867962,-__1080.1.0.0	29	40	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE__mrna.noflip.NA__chr7:5322496..5322610,+__1109.1.0.0	39	50	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr6:96969541..96969655,+__2421.1.0.0	55	66	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	FLIPPED__Antisense.flip.antisense__chr11:10562731..10562845,-__2629.1.0.0	46	57	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE__Antisense.flip.sense__chr11:10562731..10562845,+__151.1.0.0	58	69	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.2.0	49	60	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.1.0	49	60	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.0.0	49	60	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.1	49	60	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:96969541..96969655,-__761.1.3.0	49	60	-	10.629	9.89e-05	0.281	CCGCCCCCCGCG
ZBTB7C	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	59	70	-	10.629	9.89e-05	0.281	TCGACCCCCCGC
ZBTB7C	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.0.0	59	70	-	10.629	9.89e-05	0.281	TCGACCCCCCGC
ZBTB7C	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	90	101	+	10.629	9.89e-05	0.281	CCGCCCCCCGCG
TFAP2C(var.3)	WILDTYPE__Lincrna.flip.sense__chr11:62623322..62623436,-__187.1.0.0	34	46	-	8.7069	9.89e-05	0.0586	TGCCGCAGAGGCC
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr15:40733258..40733372,-__2746.1.0.0	45	57	-	8.7069	9.89e-05	0.0586	CGCCCGCCCGGCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr15:40733258..40733372,+__1025.1.0.0	58	70	+	8.7069	9.89e-05	0.0586	CGCCCGCCCGGCC
TFAP2C(var.3)	FLIPPED__Lincrna.flip.antisense__chr11:62623322..62623436,+__2347.1.0.0	69	81	+	8.7069	9.89e-05	0.0586	TGCCGCAGAGGCC
SP8	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	22	33	-	10.1579	9.89e-05	0.0401	TCAACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.0.0	30	41	-	10.1579	9.89e-05	0.0401	ACAACCCCCATC
SP8	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:45449206..45449320,+__1539.1.1.0	30	41	-	10.1579	9.89e-05	0.0401	ACAACCCCCATC
SP8	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:45017656..45017770,+__1308.1.1.0	32	43	-	10.1579	9.89e-05	0.0401	CCACCCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chrX:131352063..131352177,-__1127.1.0.0	44	55	-	10.1579	9.89e-05	0.0401	CCACCCCCCACC
SP8	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	70	81	-	10.1579	9.89e-05	0.0401	TCAACCCCCACC
SP8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.0.0	36	47	+	10.1579	9.89e-05	0.0401	CCACCCCCCACC
SP8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:22602876..22602990,+__794.1.1.0	36	47	+	10.1579	9.89e-05	0.0401	CCACCCCCCACC
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr8:104310919..104311033,+__2430.1.0.0	66	79	-	3.92857	9.89e-05	0.384	TGGCCCTGCGCCCG
NFIC::TLX1	WILDTYPE__Enhancer.noflip.NA__chr16:86965152..86965266,+__1875.1.0.0	81	94	-	3.92857	9.89e-05	0.384	TGGCTGCTCGTCAG
NFIC::TLX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:17756264..17756378,+__983.1.1.0	86	99	-	3.92857	9.89e-05	0.384	TTGCTGCTCGCCAG
NFIC::TLX1	WILDTYPE__Antisense.flip.sense__chr8:104310919..104311033,-__825.1.0.0	36	49	+	3.92857	9.89e-05	0.384	TGGCCCTGCGCCCG
CUX1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.0.0	48	57	-	11.2143	9.89e-05	1	CAATCAATAC
CUX1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.0	48	57	-	11.2143	9.89e-05	1	CAATCAATAC
CUX1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr3:191000168..191000282,-__1619.1.1.1	48	57	-	11.2143	9.89e-05	1	CAATCAATAC
JUNB	FLIPPED__Enhancer.flip.antisense__chr17:25821791..25821905,-__2828.1.0.0	18	28	+	10.2245	9.9e-05	0.269	CACTGAGTCAG
JUNB	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.1.0	87	97	-	10.2245	9.9e-05	0.269	CACTGAGTCAG
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:25821791..25821905,+__1768.1.0.0	87	97	-	10.2245	9.9e-05	0.269	CACTGAGTCAG
INSM1	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.1.0	85	96	-	8.67347	9.9e-05	0.209	AGGCTGGGGTTA
LEF1	WILDTYPE__Lincrna.noflip.NA__chrX:65219544..65219658,+__941.1.0.0	46	60	-	7.67742	9.9e-05	1	TGAGATAAAAGCACT
MTF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:108746008..108746122,+__1338.1.1.0	11	24	+	5.17073	9.9e-05	0.538	TGGGCGCACGGCGC
Pax6	WILDTYPE__Antisense.noflip.NA__chr3:151987300..151987414,-__557.1.0.0	17	30	-	9.93333	9.9e-05	1	ATTACGCATGACAT
Pax6	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.1.0	52	65	-	9.93333	9.9e-05	1	TTCACTCTTTATTT
Pax6	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:209602085..209602199,+__48.1.0.0	52	65	-	9.93333	9.9e-05	1	TTCACTCTTTATTT
POU3F2	WILDTYPE__Lincrna.noflip.NA__chr1:81106885..81106999,+__92.1.0.0	31	42	-	10.1935	9.9e-05	1	TTATGCAAAACT
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.0.0	5	14	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr7:86781689..86781803,+__1224.1.1.0	5	14	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.0	9	18	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.0.0	9	18	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.1.0	9	18	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:58166317..58166431,+__1486.1.2.1	9	18	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:96037145..96037259,+__1702.1.1.0	11	20	+	10.7273	9.9e-05	0.185	GTAGGGGAAC
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr8:94753202..94753316,+__2468.1.0.0	17	26	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.1.0	24	33	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:86781612..86781726,-__817.1.0.0	24	33	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr13:46785916..46786030,-__1012.1.0.0	36	45	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.0.0	31	40	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.1.0	31	40	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.0	31	40	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:209601309..209601423,-__2126.1.2.1	31	40	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr7:79082114..79082228,+__813.1.0.0	31	40	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE__Antisense.noflip.NA__chr17:26926108..26926222,+__360.1.0.0	33	42	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	FLIPPED__Enhancer.flip.antisense__chr1:209601309..209601423,+__2555.1.0.0	75	84	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr13:46785916..46786030,+__2452.1.0.0	70	79	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	FLIPPED__Antisense.flip.antisense__chr7:86781612..86781726,+__2429.1.0.0	82	91	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	WILDTYPE__mrna.flip.sense__chr8:94753202..94753316,-__1119.1.0.0	89	98	+	10.7273	9.9e-05	0.185	GGAGGGGCAG
MZF1(var.2)	FLIPPED__mrna.flip.antisense__chr7:86781689..86781803,-__2804.1.0.0	101	110	-	10.7273	9.9e-05	0.185	GGAGGGGCAG
NKX2-8	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.1.0	6	14	+	10.6923	9.9e-05	1	CCACTTGTA
NKX2-8	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:111496519..111496633,+__652.1.0.0	6	14	+	10.6923	9.9e-05	1	CCACTTGTA
NKX2-8	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	89	97	-	10.6923	9.9e-05	1	CCACTTGTA
Spz1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.1	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.1.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.2.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.3.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.5.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.0.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.7.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.6.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Spz1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32577762..32577876,+__1980.1.4.0	69	79	+	10.6727	9.9e-05	0.797	AGGGAAGGAGC
Stat6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.1	69	83	+	10.0172	9.9e-05	0.867	TGATTCTGCAGAAAA
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.2.0	69	83	+	10.0172	9.9e-05	0.867	TGATTCTGCAGAAAA
Stat6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.1.0	69	83	+	10.0172	9.9e-05	0.867	TGATTCTGCAGAAAA
Stat6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:91102409..91102523,-__978.1.0.0	69	83	+	10.0172	9.9e-05	0.867	TGATTCTGCAGAAAA
ZIC1	WILDTYPE__Antisense.noflip.NA__chr3:196729743..196729857,+__575.1.0.0	7	20	+	5.14894	9.9e-05	0.106	TCCCTCCCGCCGCC
ZIC1	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	25	38	-	5.14894	9.9e-05	0.106	CACCCCCTCCAGAG
ZIC1	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	77	90	+	5.14894	9.9e-05	0.106	CACCCCCTCCAGAG
Ar	FLIPPED__mrna.flip.antisense__chr12:96390087..96390201,+__2486.1.0.0	9	25	+	5.41379	9.9e-05	0.882	ATAAACACCATGTTCCT
Ar	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.0.0	93	109	+	5.41379	9.9e-05	0.882	CGGGAGACCCTGTGCCC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.1.0	93	109	+	5.41379	9.9e-05	0.882	CGGGAGACCCTGTGCCC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.2.0	93	109	+	5.41379	9.9e-05	0.882	CGGGAGACCCTGTGCCC
Ar	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.0	93	109	+	5.41379	9.9e-05	0.882	CGGGAGACCCTGTGCCC
Ar	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:29648861..29648975,-__1659.1.3.1	93	109	+	5.41379	9.9e-05	0.882	CGGGAGACCCTGTGCCC
Ar	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.1.0	90	106	-	5.41379	9.9e-05	0.882	ATAAACACCATGTTCCT
Ar	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:96390087..96390201,-__1159.1.0.0	90	106	-	5.41379	9.9e-05	0.882	ATAAACACCATGTTCCT
Stat5a::Stat5b	WILDTYPE__mrna.noflip.NA__chr8:125985478..125985592,+__1112.1.0.0	10	20	-	10.6531	9.9e-05	0.423	CGTTCTAGGAA
Stat5a::Stat5b	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.0.0	38	48	-	10.6531	9.9e-05	0.423	TCTTCCTAGAG
Stat5a::Stat5b	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chrX:114957217..114957331,+__927.1.1.0	38	48	-	10.6531	9.9e-05	0.423	TCTTCCTAGAG
RUNX1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.0.0	84	94	+	10.7414	9.9e-05	0.308	CCCTGTGGCTC
RUNX1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr11:122293488..122293602,-__164.1.1.0	84	94	+	10.7414	9.9e-05	0.308	CCCTGTGGCTC
HES5	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.0.0	44	55	-	0.982759	9.9e-05	0.298	CGCCACCTGCCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.1.0	44	55	-	0.982759	9.9e-05	0.298	CGCCACCTGCCA
HES5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.0	44	55	-	0.982759	9.9e-05	0.298	CGCCACCTGCCA
HES5	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr1:203259616..203259730,-__2125.1.2.1	44	55	-	0.982759	9.9e-05	0.298	CGCCACCTGCCA
HES5	FLIPPED__Enhancer.flip.antisense__chr1:203259616..203259730,+__2554.1.0.0	60	71	+	0.982759	9.9e-05	0.298	CGCCACCTGCCA
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894873..1894987,+__1982.1.0.0	9	25	+	-1.90909	9.9e-05	0.514	GAGGTCACACCCACACG
ESR1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:1894829..1894943,-__2275.1.0.0	46	62	-	-1.90909	9.9e-05	0.514	GAGGTCACACCCACACG
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.1	8	21	+	7.75862	9.9e-05	0.0422	CACCCCGCCTCCAA
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.1.0	8	21	+	7.75862	9.9e-05	0.0422	CACCCCGCCTCCAA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:8428960..8429074,+__1285.1.0.0	8	21	+	7.75862	9.9e-05	0.0422	CACCCCGCCTCCAA
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.0.0	14	27	-	7.75862	9.9e-05	0.0422	TGCTCCACCCCCTG
KLF14	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:17658773..17658887,+__848.1.1.0	14	27	-	7.75862	9.9e-05	0.0422	TGCTCCACCCCCTG
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.0.0	56	69	-	7.75862	9.9e-05	0.0422	CGCCCCGCCCCGAC
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.0	56	69	-	7.75862	9.9e-05	0.0422	CGCCCCGCCCCGAC
KLF14	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:144660465..144660579,-__1688.1.1.1	56	69	-	7.75862	9.9e-05	0.0422	CGCCCCGCCCCGAC
NFKB2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.1.0	2	14	+	7.04545	9.9e-05	0.265	CGGGTGACACCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr4:110354902..110355016,+__1284.1.0.0	2	14	+	7.04545	9.9e-05	0.265	CGGGTGACACCCT
NFKB2	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.0.0	84	96	-	7.04545	9.9e-05	0.265	CGGGTGACACCCT
NFKB2	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:110354885..110354999,-__601.1.1.0	84	96	-	7.04545	9.9e-05	0.265	CGGGTGACACCCT
NFKB2	FLIPPED__mrna.flip.antisense__chr4:110354902..110355016,-__2810.1.0.0	101	113	-	7.04545	9.9e-05	0.265	CGGGTGACACCCT
Myog	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	87	97	-	10.6939	9.91e-05	0.19	CACAGGTGCAA
Myog	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.0.0	87	97	-	10.6939	9.91e-05	0.19	CACAGGTGCAA
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.1.0	13	21	-	8.81034	9.91e-05	0.398	ATGACTTAT
JDP2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.0.0	13	21	-	8.81034	9.91e-05	0.398	ATGACTTAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.1	13	21	-	8.81034	9.91e-05	0.398	ATGACTTAT
JDP2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chrX:100662878..100662992,-__1398.1.2.0	13	21	-	8.81034	9.91e-05	0.398	ATGACTTAT
JDP2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.1	27	35	-	8.81034	9.91e-05	0.398	ATGACTTAT
JDP2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr13:70523521..70523635,-__2152.1.4.0	27	35	-	8.81034	9.91e-05	0.398	ATGACTTAT
RAX	WILDTYPE__Enhancer.noflip.NA__chr1:87800615..87800729,-__2135.1.0.0	46	55	+	10.8136	9.91e-05	1	GTTAATTAAA
USF2	WILDTYPE__mrna.noflip.NA__chr3:197686827..197686941,-__1348.1.0.0	45	55	+	10.3469	9.91e-05	0.194	CCCACGTGAGT
BATF3	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	82	95	-	-0.681818	9.91e-05	0.271	TGATGGCGGCAGCA
PLAG1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	7	20	-	4.39796	9.91e-05	0.0785	GGAGCTTAAAGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.0	7	20	-	4.39796	9.91e-05	0.0785	GGAGCTTAAAGGGA
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.1.0	7	20	-	4.39796	9.91e-05	0.0785	GGAGCTTAAAGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.0.0	7	20	-	4.39796	9.91e-05	0.0785	GGAGCTTAAAGGGA
PLAG1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.0.0	90	103	+	4.39796	9.91e-05	0.0785	GCGGCGAAATGGTG
PLAG1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:32021734..32021848,-__1600.1.1.0	90	103	+	4.39796	9.91e-05	0.0785	GCGGCGAAATGGTG
Rfx1	WILDTYPE__Antisense.flip.sense__chr2:122407144..122407258,+__394.1.0.0	47	60	+	9.27586	9.91e-05	0.337	CTCTCTATGGTAAC
Rfx1	FLIPPED__Antisense.flip.antisense__chr2:122407144..122407258,-__2663.1.0.0	55	68	-	9.27586	9.91e-05	0.337	CTCTCTATGGTAAC
Rfx1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.0.0	94	107	+	9.27586	9.91e-05	0.337	GCTGCCAGAGCAGC
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:142607993..142608107,-__1617.1.1.0	94	107	+	9.27586	9.91e-05	0.337	GCTGCCAGAGCAGC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.1	11	23	-	7.18966	9.91e-05	0.197	GAAACGGAAATAG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	11	23	-	7.18966	9.91e-05	0.197	GAAACGGAAATAG
ELF3	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	48	60	+	7.18966	9.91e-05	0.197	GAAACGGAAATAG
ELF3	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.1	48	60	+	7.18966	9.91e-05	0.197	GAAACGGAAATAG
Klf1	WILDTYPE__Antisense.noflip.NA__chr8:91871435..91871549,-__879.1.0.0	28	38	+	9.95455	9.91e-05	0.0613	GCCAACACCCA
ZNF740	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.1.0	30	39	-	9.93578	9.91e-05	0.0566	GCCCCCTCAC
ZNF740	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:102582142..102582256,-__886.1.0.0	30	39	-	9.93578	9.91e-05	0.0566	GCCCCCTCAC
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr10:106113294..106113408,-__104.1.0.0	30	39	-	9.93578	9.91e-05	0.0566	GCCCCCTCAC
Znf423	WILDTYPE__Enhancer.noflip.NA__chr21:45132121..45132235,-__2088.1.0.0	36	50	+	4.13483	9.91e-05	0.42	AGCACCACAGGGTTC
CTCF	WILDTYPE__Lincrna.noflip.NA__chr11:2018948..2019062,-__172.1.0.0	56	74	+	7.78689	9.91e-05	0.138	GGGCAACCAGGGGAAGATG
CTCF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	42	60	-	7.78689	9.91e-05	0.138	CGGCCACGTGAGGACGAAC
CTCF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	42	60	-	7.78689	9.91e-05	0.138	CGGCCACGTGAGGACGAAC
REST	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:129685665..129685779,+__1455.1.1.0	52	72	-	4.05102	9.91e-05	0.252	CTCAGAAGCAGGTGCAGCTCC
ZNF263	WILDTYPE__Lincrna.noflip.NA__chr9:132253021..132253135,+__899.1.0.0	14	34	-	8.85714	9.91e-05	0.0242	GAAGGAGGTGGGACTGTGACA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.11.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.5.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.4.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.2.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.1.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.0.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.6.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.7.0	27	47	-	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	40	60	-	8.85714	9.91e-05	0.0242	GAGGGGTGGGGGTGGGGTGGA
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	40	60	-	8.85714	9.91e-05	0.0242	GAGGGGTGGGGGTGGGGTGGA
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.0.0	59	79	-	8.85714	9.91e-05	0.0242	GGTGGAGGGAGGCCTGGTTAG
ZNF263	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:116662560..116662674,-__1452.1.1.0	59	79	-	8.85714	9.91e-05	0.0242	GGTGGAGGGAGGCCTGGTTAG
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.0.0	65	85	-	8.85714	9.91e-05	0.0242	AAAAGTGGAGGGGGGTGGGTG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:130586299..130586413,+__1818.1.1.0	65	85	-	8.85714	9.91e-05	0.0242	AAAAGTGGAGGGGGGTGGGTG
ZNF263	WILDTYPE__mrna.noflip.NA__chr6:31864959..31865073,-__1100.1.0.0	71	91	-	8.85714	9.91e-05	0.0242	TGGGGCCGAGAGAAGAGGAGG
ZNF263	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	88	108	-	8.85714	9.91e-05	0.0242	GGGGCGGGGGGCAGAGAAAGG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	2	22	+	8.85714	9.91e-05	0.0242	GAGGGGTGGGGGTGGGGTGGA
ZNF263	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	7	27	+	8.85714	9.91e-05	0.0242	GGGGCGGGGGGCAGAGAAAGG
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.2.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.3.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.8.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.9.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.0.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.10.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.7.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571851..32571965,+__1979.1.1.0	24	44	+	8.85714	9.91e-05	0.0242	TATGCAGGAAGCAGGGGGAGT
ZNF263	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	45	65	+	8.85714	9.91e-05	0.0242	GGGGGCGGAAACGCTGAGGAG
ZNF263	WILDTYPE__Enhancer.noflip.NA__chr7:130586329..130586443,-__2111.1.0.0	60	80	+	8.85714	9.91e-05	0.0242	AAAAGTGGAGGGGGGTGGGTG
TEAD1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.0.0	29	38	+	10.8387	9.91e-05	1	CAAATTCCTT
TEAD1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:167587092..167587206,+__1735.1.1.0	29	38	+	10.8387	9.91e-05	1	CAAATTCCTT
TEAD1	WILDTYPE__Enhancer.noflip.NA__chr1:167587039..167587153,-__2028.1.0.0	24	33	-	10.8387	9.91e-05	1	CAAATTCCTT
T	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	41	56	-	6.84615	9.91e-05	1	TGCCACGTGAGCGTGA
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.1	16	26	+	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.2.0	16	26	+	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.1.0	16	26	+	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737487..30737601,-__2270.1.0.0	16	26	+	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.0.0	57	67	-	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.0	57	67	-	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.1.0	57	67	-	9.47273	9.91e-05	0.257	GGTGACTAAGT
FOSL1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr6:30737519..30737633,+__1977.1.2.1	57	67	-	9.47273	9.91e-05	0.257	GGTGACTAAGT
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.0.0	19	28	-	10.4255	9.91e-05	0.975	AAGTGTGATC
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087955..44088069,+__1462.1.1.0	19	28	-	10.4255	9.91e-05	0.975	AAGTGTGATC
TBR1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.1.0	45	54	-	10.4255	9.91e-05	0.975	AAGTGTGATC
TBR1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:44087929..44088043,+__1461.1.0.0	45	54	-	10.4255	9.91e-05	0.975	AAGTGTGATC
GATA2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:159174613..159174727,+__1422.1.0.0	61	74	+	10.8545	9.91e-05	1	TGGCTCTTATCTTG
EGR1	WILDTYPE__mrna.noflip.NA__chr13:46961312..46961426,-__1013.1.0.0	94	107	-	9.42308	9.91e-05	0.0324	GGTCCTCCCTCGCG
NHLH1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.1.0	58	67	+	10.1552	9.91e-05	0.159	GTCAGCTGCG
NHLH1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:67927077..67927191,+__1510.1.0.0	58	67	+	10.1552	9.91e-05	0.159	GTCAGCTGCG
NHLH1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.1	54	63	-	10.1552	9.91e-05	0.159	CGCACGTGCT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.1.0	54	63	-	10.1552	9.91e-05	0.159	CGCACGTGCT
NHLH1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.2.0	54	63	-	10.1552	9.91e-05	0.159	CGCACGTGCT
NHLH1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:42839552..42839666,+__475.1.0.0	54	63	-	10.1552	9.91e-05	0.159	CGCACGTGCT
ZIC3	FLIPPED__mrna.flip.antisense__chr12:56122758..56122872,+__2484.1.0.0	7	21	+	7.08571	9.91e-05	0.13	CCTCTCCCGCCGCGG
ZIC3	WILDTYPE__mrna.flip.sense__chr12:56122758..56122872,-__1157.1.0.0	94	108	-	7.08571	9.91e-05	0.13	CCTCTCCCGCCGCGG
DBP	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.0.0	46	57	+	10.5472	9.91e-05	1	CATTGCATAATG
DBP	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr6:147453054..147453168,-__734.1.1.0	46	57	+	10.5472	9.91e-05	1	CATTGCATAATG
GLIS1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.0.0	88	103	+	-11.4615	9.91e-05	0.33	GGACGGGCCGCGACGC
GLIS1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:128171109..128171223,-__2301.1.2.0	88	103	+	-11.4615	9.91e-05	0.33	GGACGGGCCGCGACGC
PAX5	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	40	58	+	9.82258	9.92e-05	0.16	CGGGGCAGTAGGGCGGGCG
PAX5	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	57	75	-	9.82258	9.92e-05	0.16	CGGGGCAGTAGGGCGGGCG
TCF4	FLIPPED__mrna.flip.antisense__chr7:100450297..100450411,-__2802.1.0.0	35	44	-	11.0816	9.92e-05	0.44	CGCAGCTGTC
TCF4	WILDTYPE__mrna.flip.sense__chr7:100450297..100450411,+__1218.1.0.0	71	80	+	11.0816	9.92e-05	0.44	CGCAGCTGTC
TCF4	WILDTYPE__Lincrna.noflip.NA__chr2:70352408..70352522,-__443.1.0.0	73	82	+	11.0816	9.92e-05	0.44	CGCAGCTGTC
EGR3	WILDTYPE__Antisense.noflip.NA__chr12:48099827..48099941,+__232.1.0.0	12	26	+	5.15517	9.92e-05	0.0423	ACAAGCCCCCGCGGC
EGR3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.0.0	76	90	+	5.15517	9.92e-05	0.0423	TATCACCCCCGCCCC
EGR3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:97667530..97667644,-__146.1.1.0	76	90	+	5.15517	9.92e-05	0.0423	TATCACCCCCGCCCC
CENPB	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	6	20	-	9.67308	9.92e-05	1	CCCGCCAACTCCGCA
CENPB	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	6	20	-	9.67308	9.92e-05	1	CCCGCCAACTCCGCA
CENPB	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	95	109	+	9.67308	9.92e-05	1	CCCGCCAACTCCGCA
Ascl2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.1.0	74	83	-	10.2429	9.92e-05	0.257	GACTGCTGCT
Ascl2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr11:2399192..2399306,-__174.1.0.0	74	83	-	10.2429	9.92e-05	0.257	GACTGCTGCT
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.1.0	32	51	-	2.44037	9.92e-05	0.0771	CCCCGCCCCGCCCCGCCCCC
RREB1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.0.0	32	51	-	2.44037	9.92e-05	0.0771	CCCCGCCCCGCCCCGCCCCC
RREB1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.0	32	51	-	2.44037	9.92e-05	0.0771	CCCCGCCCCGCCCCGCCCCC
RREB1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:17726909..17727023,-__1515.1.2.1	32	51	-	2.44037	9.92e-05	0.0771	CCCCGCCCCGCCCCGCCCCC
RFX2	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	23	38	-	4.78571	9.92e-05	0.49	AGTAACCATAGCGGCT
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	77	92	+	4.78571	9.92e-05	0.49	AGTAACCATAGCGGCT
RFX2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	77	92	+	4.78571	9.92e-05	0.49	AGTAACCATAGCGGCT
RFX2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.1.0	89	104	+	4.78571	9.92e-05	0.49	AGTTGCTTTGCCTACT
RFX2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:30851134..30851248,+__1661.1.0.0	89	104	+	4.78571	9.92e-05	0.49	AGTTGCTTTGCCTACT
ZBTB18	FLIPPED__Lincrna.flip.antisense__chr5:104728636..104728750,+__2401.1.0.0	31	43	+	8.72857	9.92e-05	0.769	TCGACAGCTGTGG
ZBTB18	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.1.0	72	84	-	8.72857	9.92e-05	0.769	TCGACAGCTGTGG
ZBTB18	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr5:104728636..104728750,-__651.1.0.0	72	84	-	8.72857	9.92e-05	0.769	TCGACAGCTGTGG
TFCP2	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.0.0	29	38	-	10.6818	9.92e-05	1	TATCCGGTTT
TFCP2	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr20:57425898..57426012,-__485.1.1.0	29	38	-	10.6818	9.92e-05	1	TATCCGGTTT
Nr2e1	WILDTYPE__Enhancer.noflip.NA__chr1:158146979..158147093,+__1734.1.0.0	28	36	-	10.9839	9.92e-05	1	AAAGGTCAA
Nr2e1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.1	29	37	-	10.9839	9.92e-05	1	AAAGGTCAA
Nr2e1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.1.0	29	37	-	10.9839	9.92e-05	1	AAAGGTCAA
Nr2e1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:207630250..207630364,+__1557.1.0.0	29	37	-	10.9839	9.92e-05	1	AAAGGTCAA
E2F4	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	16	26	-	9.81034	9.92e-05	0.0532	GCGCGGGGGAT
NFIC::TLX1	WILDTYPE__Antisense.noflip.NA__chr7:1781862..1781976,-__792.1.0.0	35	48	-	3.91837	9.92e-05	0.384	CGGCCGCTGGCCAG
NFIC::TLX1	WILDTYPE__Antisense.flip.sense__chr7:1781881..1781995,-__793.1.0.0	54	67	-	3.91837	9.92e-05	0.384	CGGCCGCTGGCCAG
NFIC::TLX1	FLIPPED__Antisense.flip.antisense__chr7:1781881..1781995,+__2425.1.0.0	48	61	+	3.91837	9.92e-05	0.384	CGGCCGCTGGCCAG
JUN(var.2)	WILDTYPE__Lincrna.noflip.NA__chrX:13321493..13321607,-__930.1.0.0	17	30	+	10.3077	9.92e-05	0.257	TGATAGTGACTAAG
SP3	WILDTYPE__Antisense.noflip.NA__chr8:82193624..82193738,-__871.1.0.0	14	24	+	10.4715	9.92e-05	0.029	GCCACCCCCAG
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.0	49	59	+	10.4715	9.92e-05	0.029	CACACGCCCGC
SP3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.1.0	49	59	+	10.4715	9.92e-05	0.029	CACACGCCCGC
SP3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.0.0	49	59	+	10.4715	9.92e-05	0.029	CACACGCCCGC
SP3	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr4:175041637..175041751,-__619.1.2.1	49	59	+	10.4715	9.92e-05	0.029	CACACGCCCGC
E2F7	FLIPPED__mrna.flip.antisense__chr1:46769244..46769358,-__2741.1.0.0	23	36	-	-6.37705	9.92e-05	1	ACTTCCGGCCAGAT
E2F7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.0.0	10	23	+	-6.37705	9.92e-05	1	GTTTCTCGCCATCA
E2F7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.1.0	10	23	+	-6.37705	9.92e-05	1	GTTTCTCGCCATCA
E2F7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.2.0	10	23	+	-6.37705	9.92e-05	1	GTTTCTCGCCATCA
E2F7	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.1	10	23	+	-6.37705	9.92e-05	1	GTTTCTCGCCATCA
E2F7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr17:19015911..19016025,-__356.1.3.0	10	23	+	-6.37705	9.92e-05	1	GTTTCTCGCCATCA
E2F7	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:46769244..46769358,+__968.1.0.0	79	92	+	-6.37705	9.92e-05	1	ACTTCCGGCCAGAT
E2F7	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	79	92	+	-6.37705	9.92e-05	1	ACTTCCGGCCAGAT
Hoxa9	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	21	31	+	10.2237	9.92e-05	1	GTCCTCAATCA
SMAD2::SMAD3::SMAD4	WILDTYPE__Enhancer.noflip.NA__chr15:101741761..101741875,+__1762.1.0.0	75	87	-	10.0164	9.92e-05	0.359	GTGACTCACAGCT
SMAD2::SMAD3::SMAD4	FLIPPED__Lincrna.flip.antisense__chrX:130964597..130964711,+__2444.1.0.0	100	112	-	10.0164	9.92e-05	0.359	TCGTCTCTCTCCC
SMAD2::SMAD3::SMAD4	WILDTYPE__Lincrna.flip.sense__chrX:130964597..130964711,-__929.1.0.0	3	15	+	10.0164	9.92e-05	0.359	TCGTCTCTCTCCC
ELK1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.1.0	21	30	+	9.29787	9.92e-05	0.115	GACGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr16:2587909..2588023,+__1404.1.0.0	21	30	+	9.29787	9.92e-05	0.115	GACGGAAGTC
ELK1	FLIPPED__mrna.flip.antisense__chr9:98637893..98638007,-__2809.1.0.0	36	45	-	9.29787	9.92e-05	0.115	GACGGAAGTC
ELK1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.1.0	70	79	+	9.29787	9.92e-05	0.115	GACGGAAGTC
ELK1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr9:98637893..98638007,+__1230.1.0.0	70	79	+	9.29787	9.92e-05	0.115	GACGGAAGTC
ELK1	WILDTYPE__Antisense.noflip.NA__chr17:7487369..7487483,-__372.1.0.0	80	89	-	9.29787	9.92e-05	0.115	GACGGAAGTC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr7:100942814..100942928,+__765.1.1.0	10	22	-	8.83607	9.92e-05	0.0653	TGCCGGGAAGGCC
TFAP2B(var.3)	WILDTYPE__Antisense.noflip.NA__chr2:96874065..96874179,+__454.1.0.0	91	103	+	8.83607	9.92e-05	0.0653	AGCCTCCGCGGGA
TFAP2B(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	93	105	-	8.83607	9.92e-05	0.0653	GGCCCCGGCGGGG
HES7	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.1.0	5	16	-	1.93103	9.93e-05	0.225	AGACACGTACCC
HES7	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	5	16	-	1.93103	9.93e-05	0.225	AGACACGTACCC
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553929..124554043,-__2192.1.1.0	25	36	+	1.93103	9.93e-05	0.225	GGGCACGTGGGG
HES7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr3:124553965..124554079,+__1899.1.1.0	43	54	-	1.93103	9.93e-05	0.225	GGGCACGTGGGG
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr14:71865867..71865981,+__1865.1.0.0	89	106	+	-16.3026	9.93e-05	0.0569	TGAAGGGAAGAGGGAGGC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr14:71865862..71865976,+__2573.1.0.0	94	111	+	-16.3026	9.93e-05	0.0569	TGAAGGGAAGAGGGAGGC
EWSR1-FLI1	WILDTYPE__Enhancer.flip.sense__chr14:71865862..71865976,-__2158.1.0.0	4	21	-	-16.3026	9.93e-05	0.0569	TGAAGGGAAGAGGGAGGC
EWSR1-FLI1	FLIPPED__Enhancer.flip.antisense__chr14:71865867..71865981,-__2857.1.0.0	9	26	-	-16.3026	9.93e-05	0.0569	TGAAGGGAAGAGGGAGGC
EWSR1-FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr20:62372641..62372755,+__1585.1.0.0	62	79	-	-16.3026	9.93e-05	0.0569	GGAGGAGATGGGGGCGGG
FOSL2	WILDTYPE__Lincrna.noflip.NA__chr14:56263371..56263485,-__292.1.0.0	20	30	+	9.61818	9.93e-05	0.275	CAGTGACTAAG
GCM1	WILDTYPE__Antisense.noflip.NA__chr10:119301744..119301858,-__109.1.0.0	41	51	-	10.1224	9.93e-05	0.553	GGTGCTGGTGG
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.1.0	19	33	-	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102142..170102256,+__1652.1.0.0	19	33	-	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:170102090..170102204,+__2539.1.0.0	71	85	-	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
ZBTB33	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.0.0	30	44	+	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
ZBTB33	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:170102090..170102204,-__1651.1.1.0	30	44	+	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
ZBTB33	FLIPPED__mrna.flip.antisense__chr6:170102142..170102256,-__2825.1.0.0	82	96	+	9.45455	9.93e-05	0.133	CTGTCGCGAGATAGC
Gfi1b	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.0.0	10	20	+	10.5	9.93e-05	0.617	AAATCTGTGAA
Gfi1b	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr13:102104846..102104960,+__1007.1.1.0	10	20	+	10.5	9.93e-05	0.617	AAATCTGTGAA
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr1:43424695..43424809,+__77.1.0.0	17	27	+	10.5	9.93e-05	0.617	TAACCACTGCC
Gfi1b	WILDTYPE__Lincrna.noflip.NA__chr1:43424633..43424747,+__76.1.0.0	79	89	+	10.5	9.93e-05	0.617	TAACCACTGCC
EHF	WILDTYPE__mrna.noflip.NA__chrX:70586130..70586244,+__1289.1.0.0	23	34	-	9.39344	9.93e-05	0.155	AGACCGGAAATA
TFAP2C	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.1.0	13	24	+	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr10:28821628..28821742,+__1144.1.0.0	13	24	+	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
TFAP2C	FLIPPED__Antisense.flip.antisense__chr10:28821597..28821711,+__2341.1.0.0	44	55	+	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
TFAP2C	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	76	87	+	10.602	9.93e-05	0.0878	CGCCCCACGGCC
TFAP2C	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	28	39	-	10.602	9.93e-05	0.0878	CGCCCCACGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.1.0	60	71	-	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:28821597..28821711,-__118.1.0.0	60	71	-	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
TFAP2C	FLIPPED__mrna.flip.antisense__chr10:28821628..28821742,-__2772.1.0.0	91	102	-	10.602	9.93e-05	0.0878	CGCCCGAGAGCA
HOXA13	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.0	49	58	+	10.8889	9.93e-05	1	ACAATAAAAG
HOXA13	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.0.0	49	58	+	10.8889	9.93e-05	1	ACAATAAAAG
HOXA13	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.2.1	49	58	+	10.8889	9.93e-05	1	ACAATAAAAG
HOXA13	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr4:6675094..6675208,+__637.1.1.0	49	58	+	10.8889	9.93e-05	1	ACAATAAAAG
HOXA13	FLIPPED__Lincrna.flip.antisense__chr4:6675094..6675208,-__2700.1.0.0	57	66	-	10.8889	9.93e-05	1	ACAATAAAAG
NRF1	WILDTYPE__mrna.noflip.NA__chr9:4985192..4985306,+__1274.1.0.0	23	33	+	9.05455	9.93e-05	0.0257	CCGGCTGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.1	26	36	+	9.05455	9.93e-05	0.0257	CCGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.1.0	26	36	+	9.05455	9.93e-05	0.0257	CCGCAGGCCCG
NRF1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.2.0	26	36	+	9.05455	9.93e-05	0.0257	CCGCAGGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr7:1199934..1200048,+__771.1.0.0	26	36	+	9.05455	9.93e-05	0.0257	CCGCAGGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.1	28	38	-	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:92414299..92414413,-__1498.1.1.0	28	38	-	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.0.0	38	48	+	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:123691397..123691511,-__1705.1.1.0	38	48	+	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.1.0	66	76	+	9.05455	9.93e-05	0.0257	CCGGCTGCCCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:74733378..74733492,-__1530.1.0.0	66	76	+	9.05455	9.93e-05	0.0257	CCGGCTGCCCG
NRF1	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	58	68	-	9.05455	9.93e-05	0.0257	ACGCCGGCCCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.1.0	98	108	+	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204992..134205106,+__1615.1.0.0	98	108	+	9.05455	9.93e-05	0.0257	CCGCCGGTGCG
SPDEF	FLIPPED__Antisense.flip.antisense__chr8:6264034..6264148,+__2436.1.0.0	26	36	+	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.0.0	47	57	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.4.0	47	57	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.3.0	47	57	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:37742733..37742847,+__383.1.2.0	47	57	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.0	79	89	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.2.1	79	89	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.0.0	79	89	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
SPDEF	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr8:6264034..6264148,-__864.1.1.0	79	89	-	9.38182	9.93e-05	0.282	TCCCGGAAACG
E2F6	WILDTYPE__mrna.flip.sense__chr3:67704991..67705105,-__1196.1.0.0	18	28	-	10.0345	9.93e-05	0.0898	CAGCGGGAGGA
E2F6	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.1	67	77	-	10.0345	9.93e-05	0.0898	AGGAGGGAATT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.1.0	67	77	-	10.0345	9.93e-05	0.0898	AGGAGGGAATT
E2F6	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.0.0	67	77	-	10.0345	9.93e-05	0.0898	AGGAGGGAATT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.2.0	67	77	-	10.0345	9.93e-05	0.0898	AGGAGGGAATT
E2F6	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:38784576..38784690,-__1635.1.3.0	67	77	-	10.0345	9.93e-05	0.0898	AGGAGGGAATT
E2F6	WILDTYPE__mrna.noflip.NA__chr3:109056358..109056472,-__1069.1.0.0	44	54	+	10.0345	9.93e-05	0.0898	GGGCGGCAGGA
E2F6	FLIPPED__mrna.flip.antisense__chr3:67704991..67705105,+__2506.1.0.0	87	97	+	10.0345	9.93e-05	0.0898	CAGCGGGAGGA
GSX1	WILDTYPE__Lincrna.noflip.NA__chr5:148786446..148786560,+__665.1.0.0	93	102	+	9.38095	9.93e-05	1	TCTAATTAGT
Hoxa11	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.0.0	20	31	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.1.0	20	31	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.2.0	20	31	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_FLIPPED__control.flip.antisense__chr9:104195642..104195756,-__2899.1.0.0	38	49	-	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_SNP_PLUS_HAPLO__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.1	66	77	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_BUT_HAS_SNP__control.flip.sense__chr9:104195642..104195756,+__2320.1.0.0	66	77	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.3.0	66	77	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.1.0	66	77	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	CONTROL_SNP_INDIV__control.flip.sense__chr9:104195642..104195756,+__2320.1.2.0	66	77	+	10.7419	9.93e-05	1	AATCATAAAACA
Hoxa11	FLIPPED__Lincrna.flip.antisense__chr9:35657979..35658093,+__2442.1.0.0	84	95	-	10.7419	9.93e-05	1	AATCATAAAACA
BHLHE40	WILDTYPE__Antisense.noflip.NA__chr12:2922044..2922158,-__226.1.0.0	46	55	+	10.0192	9.93e-05	0.308	CTCACGTGGC
BHLHE40	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	49	58	+	10.0192	9.93e-05	0.308	CTCACGTGGC
BHLHE40	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	49	58	+	10.0192	9.93e-05	0.308	CTCACGTGGC
BHLHE40	WILDTYPE__Enhancer.noflip.NA__chr9:140134888..140135002,+__1925.1.0.0	77	86	+	10.0192	9.93e-05	0.308	CTCACGCGAC
ETS1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.1.0	29	38	-	10.7586	9.93e-05	0.122	GCAGGAAATG
ETS1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr8:82066455..82066569,+__870.1.0.0	29	38	-	10.7586	9.93e-05	0.122	GCAGGAAATG
Klf12	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.0.0	28	42	-	7.19672	9.93e-05	0.0749	AGCCGCGCCCAGCAA
Klf12	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:119683314..119683428,+__11.1.1.0	28	42	-	7.19672	9.93e-05	0.0749	AGCCGCGCCCAGCAA
MEF2D	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.1.0	50	61	-	5.05455	9.93e-05	1	GCTTTAAATAAA
MEF2D	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr5:40487230..40487344,+__1970.1.0.0	50	61	-	5.05455	9.93e-05	1	GCTTTAAATAAA
TFAP2B(var.2)	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	25	35	+	10.1455	9.93e-05	0.0729	CCCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.1	91	101	-	10.1455	9.93e-05	0.0729	CCCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.2.0	91	101	-	10.1455	9.93e-05	0.0729	CCCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.1.0	91	101	-	10.1455	9.93e-05	0.0729	CCCCTCCGGCC
TFAP2B(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr14:100772772..100772886,-__1371.1.0.0	91	101	-	10.1455	9.93e-05	0.0729	CCCCTCCGGCC
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.0	43	57	+	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Nr5a2	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.0.0	43	57	+	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.2.0	43	57	+	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Nr5a2	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	43	57	+	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Nr5a2	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.3.1	43	57	+	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Nr5a2	WILDTYPE__Enhancer.noflip.NA__chr22:41417964..41418078,-__2257.1.0.0	53	67	-	9.31034	9.93e-05	0.506	GACTCCAAGGGCGTC
Nr5a2	FLIPPED__Lincrna.flip.antisense__chr1:3816890..3817004,-__2623.1.0.0	58	72	-	9.31034	9.93e-05	0.506	CGGGCGAAGGTCACA
Mecom	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr9:72435677..72435791,+__1123.1.1.0	25	38	+	7.31461	9.93e-05	1	GAGATAAGAGAGGC
CEBPA	WILDTYPE__Lincrna.noflip.NA__chrX:73512151..73512265,-__947.1.0.0	83	93	+	10.8367	9.93e-05	0.889	GTTGCAAAATG
CEBPA	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	63	73	-	10.8367	9.93e-05	0.889	GTTGCTCAATT
CEBPA	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	63	73	-	10.8367	9.93e-05	0.889	GTTGCTCAATT
CEBPA	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	63	73	-	10.8367	9.93e-05	0.889	GTTGCTCAATT
ELF1	FLIPPED__Antisense.flip.antisense__chr5:87564761..87564875,-__2709.1.0.0	98	109	+	7.83636	9.93e-05	0.14	CCCACGGAAGTT
ELF1	WILDTYPE__Antisense.flip.sense__chr5:87564761..87564875,+__711.1.0.0	6	17	-	7.83636	9.93e-05	0.14	CCCACGGAAGTT
SPI1	WILDTYPE__mrna.noflip.NA__chr11:2920854..2920968,+__1387.1.0.0	66	79	-	1.36364	9.93e-05	0.277	GAATGGGGGAACTT
EVX2	WILDTYPE__mrna.noflip.NA__chr14:21737581..21737695,-__1395.1.0.0	8	17	-	10.08	9.94e-05	1	CCTAATTAGA
DUXA	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr6:32571807..32571921,-__2272.1.3.0	91	103	+	10.5484	9.94e-05	1	CAAACTGAATCAT
HNF4G	WILDTYPE__Antisense.flip.sense__chr1:24104745..24104859,-__62.1.0.0	73	87	+	10.0385	9.94e-05	0.39	AGGTGCCAGAGTTCG
HNF4G	WILDTYPE__mrna.noflip.NA__chr10:15085869..15085983,+__1393.1.0.0	86	100	+	10.0385	9.94e-05	0.39	TCTGCTCAGAGTTCA
HNF4G	FLIPPED__Antisense.flip.antisense__chr1:24104745..24104859,+__2329.1.0.0	28	42	-	10.0385	9.94e-05	0.39	AGGTGCCAGAGTTCG
PAX9	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	11	27	-	-1.29091	9.94e-05	0.624	GGCCCCGCTCCGTCGCC
PAX9	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	88	104	+	-1.29091	9.94e-05	0.624	GGCCCCGCTCCGTCGCC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.0.0	95	105	+	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244960..65245074,+__1989.1.1.0	95	105	+	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.1.0	18	28	-	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr11:65244968..65245082,-__2282.1.0.0	18	28	-	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.1.0	42	52	-	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:62649091..62649205,+__1470.1.0.0	42	52	-	10.2041	9.94e-05	0.269	CGCTGAGTCAC
JUNB	WILDTYPE__Enhancer.noflip.NA__chr9:117716333..117716447,+__1922.1.0.0	67	77	-	10.2041	9.94e-05	0.269	CGCTGAGTCAC
GLI2	FLIPPED__Antisense.flip.antisense__chr11:119252440..119252554,-__2630.1.0.0	45	56	-	9.56897	9.94e-05	0.331	GGGGCCACCCAG
GLI2	WILDTYPE__Antisense.flip.sense__chr11:119252440..119252554,+__158.1.0.0	59	70	+	9.56897	9.94e-05	0.331	GGGGCCACCCAG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.0	7	21	+	9.61538	9.94e-05	0.242	GAACCAGCCAATCTG
NFYB	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.0.0	7	21	+	9.61538	9.94e-05	0.242	GAACCAGCCAATCTG
NFYB	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.2.1	7	21	+	9.61538	9.94e-05	0.242	GAACCAGCCAATCTG
NFYB	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr20:48909177..48909291,+__482.1.1.0	7	21	+	9.61538	9.94e-05	0.242	GAACCAGCCAATCTG
NFYA	WILDTYPE__Antisense.noflip.NA__chr21:15399679..15399793,+__491.1.0.0	18	35	-	8.18293	9.94e-05	0.232	GCGCGCCTGATTGGACAG
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.1.0	5	16	+	9.78182	9.94e-05	1	TCTTACGTCACC
TEF	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.1	5	16	+	9.78182	9.94e-05	1	TCTTACGTCACC
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.3.0	5	16	+	9.78182	9.94e-05	1	TCTTACGTCACC
TEF	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.0.0	5	16	+	9.78182	9.94e-05	1	TCTTACGTCACC
TEF	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:163148952..163149066,+__1097.1.2.0	5	16	+	9.78182	9.94e-05	1	TCTTACGTCACC
BATF3	WILDTYPE__Antisense.noflip.NA__chr20:45981279..45981393,+__477.1.0.0	39	52	+	-0.69697	9.94e-05	0.271	GGATAACGTCATTT
Arntl	WILDTYPE__Antisense.noflip.NA__chr5:36725253..36725367,-__689.1.0.0	31	40	+	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	FLIPPED__Enhancer.flip.antisense__chr17:17743508..17743622,-__2862.1.0.0	24	33	-	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	80	89	+	10.7541	9.94e-05	0.307	AGTCACGCGA
Arntl	WILDTYPE__Enhancer.flip.sense__chr17:17743508..17743622,+__1876.1.0.0	82	91	+	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.0	98	107	-	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.0.0	98	107	-	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.2.1	98	107	-	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr7:151541708..151541822,+__1820.1.1.0	98	107	-	10.7541	9.94e-05	0.307	GGTCACATGC
Arntl	WILDTYPE__Lincrna.noflip.NA__chr21:36118057..36118171,+__503.1.0.0	100	109	-	10.7541	9.94e-05	0.307	GGTCACGTTC
SREBF2	WILDTYPE__Enhancer.noflip.NA__chr8:42398432..42398546,-__2116.1.0.0	38	47	+	10.3371	9.94e-05	0.895	ATGGCATGAC
EN2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.1.0	22	31	-	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989575..45989689,-__2185.1.0.0	22	31	-	10.3729	9.94e-05	1	GCCAATTAGA
EN2	FLIPPED__Enhancer.flip.antisense__chr20:45989631..45989745,-__2869.1.0.0	78	87	-	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE__Antisense.noflip.NA__chr17:46018723..46018837,-__363.1.0.0	17	26	+	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.0.0	28	37	+	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.0	28	37	+	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.1.0	28	37	+	10.3729	9.94e-05	1	GCCAATTAGA
EN2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.flip.sense__chr20:45989631..45989745,+__1892.1.2.1	28	37	+	10.3729	9.94e-05	1	GCCAATTAGA
EN2	FLIPPED__Enhancer.flip.antisense__chr20:45989575..45989689,+__2585.1.0.0	84	93	+	10.3729	9.94e-05	1	GCCAATTAGA
TFAP2C(var.3)	WILDTYPE__Enhancer.flip.sense__chr11:46264986..46265100,+__1851.1.0.0	35	47	+	8.68966	9.94e-05	0.0586	GCCCCAAAGGGCG
TFAP2C(var.3)	FLIPPED__mrna.flip.antisense__chr19:10541399..10541513,-__2750.1.0.0	43	55	+	8.68966	9.94e-05	0.0586	ACCCCGCCAGGCC
TFAP2C(var.3)	WILDTYPE__mrna.flip.sense__chr19:10541399..10541513,+__1045.1.0.0	60	72	-	8.68966	9.94e-05	0.0586	ACCCCGCCAGGCC
TFAP2C(var.3)	FLIPPED__Enhancer.flip.antisense__chr11:46264986..46265100,-__2850.1.0.0	68	80	-	8.68966	9.94e-05	0.0586	GCCCCAAAGGGCG
NR2C2	FLIPPED__Lincrna.flip.antisense__chr5:99870912..99871026,+__2414.1.0.0	62	76	-	8.44286	9.94e-05	0.123	TGACGTCAGAGGCCT
NR2C2	WILDTYPE__Enhancer.noflip.NA__chr5:173312582..173312696,-__2100.1.0.0	12	26	+	8.44286	9.94e-05	0.123	CCATATCAGAGGTGA
NR2C2	WILDTYPE__Lincrna.flip.sense__chr5:99870912..99871026,-__724.1.0.0	39	53	+	8.44286	9.94e-05	0.123	TGACGTCAGAGGCCT
HEY1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.0.0	79	88	+	10.6909	9.94e-05	0.173	CACACGTGGA
HEY1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:110211254..110211368,-__208.1.1.0	79	88	+	10.6909	9.94e-05	0.173	CACACGTGGA
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:3816890..3817004,+__72.1.1.0	5	20	+	9.52727	9.94e-05	0.042	CCCCCCCCCCCCCACC
EGR4	FLIPPED__Lincrna.flip.antisense__chr1:713977..714091,+__2332.1.0.0	26	41	+	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.0.0	29	44	+	9.52727	9.94e-05	0.042	CGCCCCCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035037..73035151,+__2015.1.1.0	29	44	+	9.52727	9.94e-05	0.042	CGCCCCCCCCGCCCCG
EGR4	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	20	35	-	9.52727	9.94e-05	0.042	CGCCCCCCCCGCCCCG
EGR4	FLIPPED__Enhancer.flip.antisense__chr16:85202602..85202716,+__2577.1.0.0	35	50	-	9.52727	9.94e-05	0.042	GCCCGCCGCCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.0.0	35	50	-	9.52727	9.94e-05	0.042	CGCCCCCCCCGCCCCG
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:73035001..73035115,-__2308.1.1.0	35	50	-	9.52727	9.94e-05	0.042	CGCCCCCCCCGCCCCG
EGR4	WILDTYPE__Enhancer.flip.sense__chr16:85202602..85202716,-__2167.1.0.0	65	80	+	9.52727	9.94e-05	0.042	GCCCGCCGCCGCCTCC
EGR4	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr1:713977..714091,-__88.1.0.0	74	89	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr1:713977..714091,-__88.1.1.0	74	89	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.1.0	94	109	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.0.0	94	109	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.1	94	109	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
EGR4	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:224180275..224180389,-__2305.1.2.0	94	109	-	9.52727	9.94e-05	0.042	GAACACCCGCGCCTCT
GLIS3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:49984823..49984937,+__1698.1.1.0	69	82	+	2.39394	9.94e-05	0.399	GGTCCCCCATCACG
SP1	FLIPPED__mrna.flip.antisense__chr3:62304617..62304731,-__2794.1.0.0	4	14	+	9.94231	9.95e-05	0.0222	AGCCCGCCTCT
SP1	FLIPPED__mrna.flip.antisense__chr6:153304679..153304793,+__2519.1.0.0	14	24	+	9.94231	9.95e-05	0.0222	AGCCCGCCTCT
SP1	WILDTYPE__mrna.noflip.NA__chr10:72201402..72201516,-__1251.1.0.0	16	26	-	9.94231	9.95e-05	0.0222	CCCCCACCTTT
SP1	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	37	47	+	9.94231	9.95e-05	0.0222	TCCCCACCCAG
SP1	WILDTYPE__Lincrna.noflip.NA__chr11:115630880..115630994,-__155.1.0.0	53	63	+	9.94231	9.95e-05	0.0222	GCTCCTCCCAA
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	68	78	-	9.94231	9.95e-05	0.0222	TCCCCACCCAG
SP1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.1	68	78	-	9.94231	9.95e-05	0.0222	TCCCCACCCAG
SP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	68	78	-	9.94231	9.95e-05	0.0222	TCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.1.0	68	78	-	9.94231	9.95e-05	0.0222	TCCCCACCCAG
SP1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.1.0	91	101	-	9.94231	9.95e-05	0.0222	AGCCCGCCTCT
SP1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr6:153304679..153304793,-__1212.1.0.0	91	101	-	9.94231	9.95e-05	0.0222	AGCCCGCCTCT
SP1	WILDTYPE__mrna.flip.sense__chr3:62304617..62304731,+__1195.1.0.0	101	111	-	9.94231	9.95e-05	0.0222	AGCCCGCCTCT
POU2F1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr3:46446676..46446790,-__2261.1.0.0	60	71	-	10.56	9.95e-05	1	GTCATGCTAATA
TFAP2C(var.2)	FLIPPED__mrna.flip.antisense__chr20:524399..524513,+__2460.1.0.0	47	57	+	10.5769	9.95e-05	0.0778	TGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE__mrna.flip.sense__chr20:524399..524513,-__1065.1.0.0	58	68	-	10.5769	9.95e-05	0.0778	TGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE__mrna.noflip.NA__chr20:49575034..49575148,-__1253.1.0.0	61	71	-	10.5769	9.95e-05	0.0778	TGCCGGAAGCG
TFAP2C(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.0.0	65	75	-	10.5769	9.95e-05	0.0778	AGCCTGGGGGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.1.0	65	75	-	10.5769	9.95e-05	0.0778	AGCCTGGGGGT
TFAP2C(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.0	65	75	-	10.5769	9.95e-05	0.0778	AGCCTGGGGGT
TFAP2C(var.2)	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr9:116102499..116102613,-__1240.1.2.1	65	75	-	10.5769	9.95e-05	0.0778	AGCCTGGGGGT
Gata4	WILDTYPE__mrna.noflip.NA__chr19:13213633..13213747,-__1399.1.0.0	47	57	+	10.8276	9.95e-05	1	CCTTATCAGGC
Gfi1b	WILDTYPE__mrna.noflip.NA__chr17:41158722..41158836,+__1356.1.0.0	48	58	-	10.4828	9.95e-05	0.617	AAATCCCTGCC
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.0.0	1	10	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr12:50222161..50222275,-__1156.1.1.0	1	10	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__Antisense.noflip.NA__chr3:194353577..194353691,+__571.1.0.0	15	24	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.0.0	9	18	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:131563449..131563563,-__1636.1.1.0	9	18	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__Antisense.flip.sense__chr12:50222246..50222360,+__234.1.0.0	20	29	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__Enhancer.noflip.NA__chr12:115106373..115106487,+__1941.1.0.0	17	26	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.0.0	21	30	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:11849715..11849829,-__1535.1.1.0	21	30	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr10:11936664..11936778,-__110.1.0.0	31	40	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr2:105469612..105469726,-__390.1.0.0	33	42	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.0.0	33	42	+	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:26503918..26504032,+__1336.1.1.0	33	42	+	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE__mrna.noflip.NA__chr2:173292205..173292319,+__1054.1.0.0	30	39	-	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.1.0	43	52	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr2:175412030..175412144,+__1720.1.0.0	43	52	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.1.0	37	46	-	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr22:41418056..41418170,+__1964.1.0.0	37	46	-	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE__Enhancer.flip.sense__chr17:7747290..7747404,-__2174.1.0.0	39	48	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__mrna.flip.sense__chrX:20284720..20284834,-__1129.1.0.0	47	56	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	FLIPPED__mrna.flip.antisense__chrX:20284720..20284834,+__2470.1.0.0	59	68	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	FLIPPED__Enhancer.flip.antisense__chr17:7747290..7747404,+__2581.1.0.0	67	76	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr14:102414536..102414650,+__1860.1.1.0	69	78	+	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE__mrna.noflip.NA__chr1:153957834..153957948,-__955.1.0.0	69	78	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE__Lincrna.noflip.NA__chr12:46777380..46777494,+__229.1.0.0	68	77	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr10:11936664..11936778,+__2339.1.0.0	75	84	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	FLIPPED__Antisense.flip.antisense__chr12:50222246..50222360,-__2639.1.0.0	86	95	-	10.3061	9.95e-05	0.0298	CCTCCTCCCT
KLF5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.1.0	95	104	-	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:100428198..100428312,+__1610.1.0.0	95	104	-	10.3061	9.95e-05	0.0298	GCCCCTCCTT
KLF5	FLIPPED__mrna.flip.antisense__chr12:50222161..50222275,+__2483.1.0.0	105	114	+	10.3061	9.95e-05	0.0298	CCTCCTCCCT
NFKB2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.0	87	99	+	7.0303	9.95e-05	0.265	TCGGGATTCACCT
NFKB2	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:25051126..25051240,+__1933.1.2.1	87	99	+	7.0303	9.95e-05	0.265	TCGGGATTCACCT
ELK4	WILDTYPE__Antisense.noflip.NA__chr4:39529556..39529670,+__629.1.0.0	14	24	-	10.4727	9.95e-05	0.0813	GACCTTCCGGT
Mitf	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr11:506733..506847,-__1465.1.1.0	48	57	+	10.3367	9.95e-05	0.29	CCTCACGTGG
Mitf	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr11:506733..506847,-__1465.1.0.0	48	57	+	10.3367	9.95e-05	0.29	CCTCACGTGG
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.2.0	104	114	-	10.5306	9.95e-05	0.218	CGCAGCTGAAA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.0	104	114	-	10.5306	9.95e-05	0.218	CGCAGCTGAAA
Tcf12	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.0.0	104	114	-	10.5306	9.95e-05	0.218	CGCAGCTGAAA
Tcf12	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	104	114	-	10.5306	9.95e-05	0.218	CGCAGCTGAAA
Tcf12	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.1.0	104	114	-	10.5306	9.95e-05	0.218	CGCAGCTGAAA
Tcf12	WILDTYPE__Lincrna.noflip.NA__chr2:118943917..118944031,-__393.1.0.0	23	33	+	10.5306	9.95e-05	0.218	CGCAGCTGAAA
RXRB	FLIPPED__Antisense.flip.antisense__chr12:70637121..70637235,+__2353.1.0.0	52	65	+	-0.854545	9.95e-05	0.587	GCGGTCAGAGGGTA
RXRB	WILDTYPE__Antisense.flip.sense__chr12:70637121..70637235,-__251.1.0.0	50	63	-	-0.854545	9.95e-05	0.587	GCGGTCAGAGGGTA
PRDM1	FLIPPED__Enhancer.flip.antisense__chr17:75954492..75954606,+__2580.1.0.0	59	73	+	9.58182	9.95e-05	0.357	TTAAGGGGAAAGGAG
PRDM1	WILDTYPE__Enhancer.flip.sense__chr17:75954492..75954606,-__2173.1.0.0	42	56	-	9.58182	9.95e-05	0.357	TTAAGGGGAAAGGAG
MYF6	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	+	9.60606	9.95e-05	1	AGCAGCTGCT
MYF6	WILDTYPE__mrna.noflip.NA__chr13:29292978..29293092,-__1011.1.0.0	93	102	-	9.60606	9.95e-05	1	AGCAGCTGCT
TGIF1	WILDTYPE__Antisense.flip.sense__chr12:47610177..47610291,-__231.1.0.0	34	45	-	-1.42308	9.95e-05	0.932	TGACTTGTGTCG
TGIF1	FLIPPED__Antisense.flip.antisense__chr12:47610177..47610291,+__2352.1.0.0	70	81	+	-1.42308	9.95e-05	0.932	TGACTTGTGTCG
IRF1	WILDTYPE__Lincrna.noflip.NA__chr11:122051076..122051190,-__159.1.0.0	24	44	+	7.96774	9.96e-05	0.192	TTTTTTTTCCCTTTTCCTTTT
IRF1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.1	19	39	-	7.96774	9.96e-05	0.192	TGACGCTTTTGGTTTCAAAAA
IRF1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.0.0	19	39	-	7.96774	9.96e-05	0.192	TGACGCTTTTGGTTTCAAAAA
IRF1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr10:70805370..70805484,+__1747.1.1.0	19	39	-	7.96774	9.96e-05	0.192	TGACGCTTTTGGTTTCAAAAA
IRF1	FLIPPED__Lincrna.flip.antisense__chr11:65190189..65190303,-__2634.1.0.0	48	68	+	7.96774	9.96e-05	0.192	CACAACTTTTGCTTTTATAGC
IRF1	WILDTYPE__Enhancer.flip.sense__chr22:31631182..31631296,+__1896.1.0.0	56	76	+	7.96774	9.96e-05	0.192	CTGCCCTTCCCCTTCCCCTTC
IRF1	FLIPPED__Enhancer.flip.antisense__chr22:31631182..31631296,-__2871.1.0.0	39	59	-	7.96774	9.96e-05	0.192	CTGCCCTTCCCCTTCCCCTTC
IRF1	WILDTYPE__Lincrna.flip.sense__chr11:65190189..65190303,+__190.1.0.0	47	67	-	7.96774	9.96e-05	0.192	CACAACTTTTGCTTTTATAGC
PKNOX1	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	35	46	-	1.06122	9.96e-05	1	GGGCAGCTGCCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.1.0	67	83	-	8.91837	9.96e-05	0.405	GGGTGACAGAGAAGACG
RARA::RXRA	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr19:11750538..11750652,+__375.1.0.0	67	83	-	8.91837	9.96e-05	0.405	GGGTGACAGAGAAGACG
RXRG	WILDTYPE__Antisense.noflip.NA__chr5:153825317..153825431,-__666.1.0.0	44	57	+	0.234043	9.96e-05	0.542	GGGTTCAAAGTAGA
RXRG	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	74	87	+	0.234043	9.96e-05	0.542	GGGTTCAAAGTAGA
RXRG	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	28	41	-	0.234043	9.96e-05	0.542	GGGTTCAAAGTAGA
SCRT1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.0.0	67	81	+	5.93443	9.96e-05	1	GAGCAACACGTTCAG
SCRT1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.0	67	81	+	5.93443	9.96e-05	1	GAGCAACACGTTCAG
SCRT1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr10:5987842..5987956,-__131.1.1.1	67	81	+	5.93443	9.96e-05	1	GAGCAACACGTTCAG
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr10:81008343..81008457,+__1749.1.0.0	11	20	-	10.5968	9.96e-05	1	GCTTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.1.0	32	41	-	10.5968	9.96e-05	1	CCTTTCCATT
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962862..228962976,-__2224.1.0.0	32	41	-	10.5968	9.96e-05	1	CCTTTCCATT
NFAT5	FLIPPED__mrna.flip.antisense__chr2:188378345..188378459,+__2459.1.0.0	33	42	-	10.5968	9.96e-05	1	CCTTTCCATT
NFAT5	WILDTYPE__Antisense.noflip.NA__chr3:188665428..188665542,-__569.1.0.0	93	102	-	10.5968	9.96e-05	1	GCTTTCCATT
NFAT5	WILDTYPE__Enhancer.noflip.NA__chr10:81008302..81008416,-__2042.1.0.0	54	63	+	10.5968	9.96e-05	1	GCTTTCCATT
NFAT5	WILDTYPE__mrna.flip.sense__chr2:188378345..188378459,-__1057.1.0.0	73	82	+	10.5968	9.96e-05	1	CCTTTCCATT
NFAT5	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.0.0	103	112	+	10.5968	9.96e-05	1	CCTTTCCATT
NFAT5	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:228962833..228962947,+__1931.1.1.0	103	112	+	10.5968	9.96e-05	1	CCTTTCCATT
NFIL3	WILDTYPE__Enhancer.noflip.NA__chr13:24528478..24528592,+__1947.1.0.0	87	97	+	10.3939	9.96e-05	1	ATATGTAATGC
TAL1::TCF3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:46769244..46769358,+__968.1.1.0	46	57	-	10.0562	9.96e-05	1	CGAACACCTGCT
TAL1::TCF3	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.0.0	81	92	-	10.0562	9.96e-05	1	GGACCAGCTTTT
TAL1::TCF3	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr1:159930967..159931081,+__25.1.1.0	81	92	-	10.0562	9.96e-05	1	GGACCAGCTTTT
ELF4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.1.0	103	114	-	8.11475	9.96e-05	0.132	ACCCAGGAAGGA
ELF4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:127898239..127898353,+__1649.1.0.0	103	114	-	8.11475	9.96e-05	0.132	ACCCAGGAAGGA
SPIC	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.1	45	58	+	10.1972	9.96e-05	0.317	CACATGAGTAAGAA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.2.0	45	58	+	10.1972	9.96e-05	0.317	CACATGAGTAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.0.0	45	58	+	10.1972	9.96e-05	0.317	CACATGAGTAAGAA
SPIC	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr1:145114583..145114697,-__2287.1.1.0	45	58	+	10.1972	9.96e-05	0.317	CACATGAGTAAGAA
SPIC	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr20:50827123..50827237,+__483.1.0.0	28	41	-	10.1972	9.96e-05	0.317	CAGAAGCGGAAGAG
Arid3b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.0	16	26	-	10.7143	9.96e-05	1	GTTTTAATTAT
Arid3b	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.2.1	16	26	-	10.7143	9.96e-05	1	GTTTTAATTAT
Arid3b	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.0.0	16	26	-	10.7143	9.96e-05	1	GTTTTAATTAT
Arid3b	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:174451533..174451647,+__618.1.1.0	16	26	-	10.7143	9.96e-05	1	GTTTTAATTAT
Arid3b	WILDTYPE__Enhancer.noflip.NA__chr19:47792905..47793019,-__2248.1.0.0	38	48	-	10.7143	9.96e-05	1	CTTTTAATTAT
ZIC3	WILDTYPE__Antisense.noflip.NA__chr5:92916714..92916828,-__718.1.0.0	19	33	-	7.07143	9.96e-05	0.13	CCCTCCCTGGTGAGA
ZIC3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.1.0	37	51	-	7.07143	9.96e-05	0.13	CGCCCCCTGCGGGCG
ZIC3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr22:50964836..50964950,-__1609.1.0.0	37	51	-	7.07143	9.96e-05	0.13	CGCCCCCTGCGGGCG
Hoxc9	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr9:35657979..35658093,-__907.1.4.0	20	32	+	10.3333	9.96e-05	1	AACCATAAAACAC
SP2	WILDTYPE__mrna.noflip.NA__chr14:24711789..24711903,-__1381.1.0.0	27	41	+	9.51724	9.96e-05	0.0199	TTACCGCCCTTTTCC
SP2	WILDTYPE__mrna.noflip.NA__chr8:42234712..42234826,-__1117.1.0.0	19	33	-	9.51724	9.96e-05	0.0199	TCCCCGCTCCGTTCC
SP2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr19:2900875..2900989,+__1537.1.3.1	28	42	-	9.51724	9.96e-05	0.0199	GATCCGCCCTCGGGG
SP2	WILDTYPE__Lincrna.noflip.NA__chr12:65996525..65996639,+__246.1.0.0	45	59	-	9.51724	9.96e-05	0.0199	GCTCTGCCCCACCCT
SP2	WILDTYPE__Enhancer.noflip.NA__chr11:65683252..65683366,-__2049.1.0.0	94	108	+	9.51724	9.96e-05	0.0199	CTTCCTCCCCACCCT
BHLHE41	WILDTYPE__mrna.noflip.NA__chr1:154193122..154193236,-__1265.1.0.0	45	54	-	7.07692	9.96e-05	0.239	GTCACGTGGT
BHLHE41	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:114404095..114404209,-__1477.1.2.0	62	71	-	7.07692	9.96e-05	0.239	GTCACGTGGT
EWSR1-FLI1	WILDTYPE__Antisense.noflip.NA__chr2:136742667..136742781,+__399.1.0.0	52	69	-	-16.3158	9.96e-05	0.0571	GGTGGGGAGGACGGGAAG
SP3	WILDTYPE__Antisense.noflip.NA__chr3:150479644..150479758,+__556.1.0.0	16	26	-	10.4634	9.97e-05	0.0291	GCCACGCCTTT
SP3	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.1	88	98	-	10.4634	9.97e-05	0.0291	CACCCGCCCAG
SP3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr11:9797133..9797247,+__205.1.3.0	88	98	-	10.4634	9.97e-05	0.0291	CACCCGCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.0.0	5	18	-	7.74138	9.97e-05	0.0423	AGGCCCGCCCCTGA
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:27863622..27863736,-__225.1.1.0	5	18	-	7.74138	9.97e-05	0.0423	AGGCCCGCCCCTGA
KLF14	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.0.0	8	21	-	7.74138	9.97e-05	0.0423	GACCCCCCCCCCAG
KLF14	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:42200971..42201085,-__1522.1.1.0	8	21	-	7.74138	9.97e-05	0.0423	GACCCCCCCCCCAG
KLF14	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chrX:134555829..134555943,+__931.1.0.0	27	40	-	7.74138	9.97e-05	0.0423	CACGCCGCCCCCTC
KLF14	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr7:121944881..121944995,+__773.1.1.0	54	67	+	7.74138	9.97e-05	0.0423	TGGCGCGCCCTCCT
ELF3	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.0.0	67	79	+	7.17241	9.97e-05	0.197	AAGCAGGAAGGAC
ELF3	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr3:113933158..113933272,+__541.1.1.0	67	79	+	7.17241	9.97e-05	0.197	AAGCAGGAAGGAC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.0	69	81	-	7.17241	9.97e-05	0.197	TCGCCGGAAGTCC
ELF3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.0.0	69	81	-	7.17241	9.97e-05	0.197	TCGCCGGAAGTCC
ELF3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.2.1	69	81	-	7.17241	9.97e-05	0.197	TCGCCGGAAGTCC
ELF3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:1102659..1102773,+__1337.1.1.0	69	81	-	7.17241	9.97e-05	0.197	TCGCCGGAAGTCC
XBP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.0	18	31	+	8.88462	9.97e-05	0.529	GAAGCCACGTCCCC
XBP1	WILDTYPE_SNP_PLUS_HAPLO__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.2.1	18	31	+	8.88462	9.97e-05	0.529	GAAGCCACGTCCCC
XBP1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.0.0	18	31	+	8.88462	9.97e-05	0.529	GAAGCCACGTCCCC
XBP1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr13:34250896..34251010,-__265.1.1.0	18	31	+	8.88462	9.97e-05	0.529	GAAGCCACGTCCCC
XBP1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr16:699214..699328,-__348.1.1.0	42	55	+	8.88462	9.97e-05	0.529	CTGGCCACGTGACC
XBP1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr16:699214..699328,-__348.1.0.0	42	55	+	8.88462	9.97e-05	0.529	CTGGCCACGTGACC
XBP1	FLIPPED__Antisense.flip.antisense__chr16:699214..699328,+__2372.1.0.0	60	73	-	8.88462	9.97e-05	0.529	CTGGCCACGTGACC
MAX	WILDTYPE__Antisense.noflip.NA__chr7:90226672..90226786,-__820.1.0.0	4	13	+	11.5	9.97e-05	0.334	TCCACGTGAT
TBP	WILDTYPE__Enhancer.noflip.NA__chr5:55654942..55655056,+__1808.1.0.0	66	80	+	10.6389	9.97e-05	0.758	ACATAAAAGCCCCCA
TBX21	WILDTYPE__Lincrna.flip.sense__chr5:27472328..27472442,+__686.1.0.0	80	89	+	10.0727	9.97e-05	1	AATGTGTGAG
TBX21	FLIPPED__Lincrna.flip.antisense__chr5:27472328..27472442,-__2704.1.0.0	26	35	-	10.0727	9.97e-05	1	AATGTGTGAG
PROX1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.0.0	35	46	-	7.76364	9.97e-05	1	CAAGGCGGCTTA
PROX1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr10:17428870..17428984,+__116.1.2.0	35	46	-	7.76364	9.97e-05	1	CAAGGCGGCTTA
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.1.0	2	11	-	9.90816	9.97e-05	0.0312	TGGGCGTCGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543899..172544013,+__1551.1.0.0	2	11	-	9.90816	9.97e-05	0.0312	TGGGCGTCGC
Klf4	WILDTYPE__Antisense.flip.sense__chr5:153825347..153825461,-__667.1.0.0	17	26	+	9.90816	9.97e-05	0.0312	TGGGCGTCGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866671..36866785,+__1840.1.0.0	34	43	+	9.90816	9.97e-05	0.0312	GGGGCGTGTT
Klf4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.1.0	38	47	-	9.90816	9.97e-05	0.0312	TGGGCGTCGC
Klf4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:172543863..172543977,+__1550.1.0.0	38	47	-	9.90816	9.97e-05	0.0312	TGGGCGTCGC
Klf4	WILDTYPE__Enhancer.noflip.NA__chr1:36866655..36866769,-__2133.1.0.0	56	65	-	9.90816	9.97e-05	0.0312	GGGGCGTGTT
Klf4	FLIPPED__Antisense.flip.antisense__chr5:153825347..153825461,+__2407.1.0.0	89	98	-	9.90816	9.97e-05	0.0312	TGGGCGTCGC
TFAP2B(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.1	51	63	+	8.81967	9.97e-05	0.0653	AGCCTCTGCGGCC
TFAP2B(var.3)	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.0.0	51	63	+	8.81967	9.97e-05	0.0653	AGCCTCTGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.1.0	51	63	+	8.81967	9.97e-05	0.0653	AGCCTCTGCGGCC
TFAP2B(var.3)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:2918201..2918315,-__2059.1.2.0	51	63	+	8.81967	9.97e-05	0.0653	AGCCTCTGCGGCC
TFAP2B(var.3)	WILDTYPE__Enhancer.noflip.NA__chr16:2918177..2918291,+__1766.1.0.0	76	88	-	8.81967	9.97e-05	0.0653	AGCCTCTGCGGCC
Stat6	WILDTYPE__mrna.noflip.NA__chr1:245022570..245022684,-__1260.1.0.0	7	21	+	10	9.97e-05	0.867	AGGTTACAGAGAAGA
ZNF740	WILDTYPE__Lincrna.noflip.NA__chr20:21106547..21106661,+__460.1.0.0	25	34	+	9.92661	9.97e-05	0.057	CCCCCCACAA
EGR3	FLIPPED__Antisense.flip.antisense__chr15:40987259..40987373,+__2367.1.0.0	25	39	-	5.13793	9.97e-05	0.0424	CCCCGCTTCCGCCCT
EGR3	FLIPPED__mrna.flip.antisense__chr20:62258393..62258507,+__2500.1.0.0	25	39	-	5.13793	9.97e-05	0.0424	CGCCGCCGCCGCCGA
EGR3	WILDTYPE__Antisense.noflip.NA__chr15:40987241..40987355,-__314.1.0.0	58	72	+	5.13793	9.97e-05	0.0424	CCCCGCTTCCGCCCT
EGR3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.1.0	63	77	+	5.13793	9.97e-05	0.0424	ACCCGCTTCCGCGTT
EGR3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:97304076..97304190,-__1577.1.0.0	63	77	+	5.13793	9.97e-05	0.0424	ACCCGCTTCCGCGTT
EGR3	WILDTYPE__Antisense.noflip.NA__chr9:34665524..34665638,+__906.1.0.0	70	84	+	5.13793	9.97e-05	0.0424	ACCCGCCTCCACTCA
EGR3	WILDTYPE__Antisense.flip.sense__chr15:40987259..40987373,-__315.1.0.0	76	90	+	5.13793	9.97e-05	0.0424	CCCCGCTTCCGCCCT
EGR3	WILDTYPE__mrna.flip.sense__chr20:62258393..62258507,-__1184.1.0.0	76	90	+	5.13793	9.97e-05	0.0424	CGCCGCCGCCGCCGA
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.1.0	27	46	-	2.42202	9.97e-05	0.0772	ATCCCAAACACCAGCAGATC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860123..11860237,-__2176.1.0.0	27	46	-	2.42202	9.97e-05	0.0772	ATCCCAAACACCAGCAGATC
RREB1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.0.0	68	87	+	2.42202	9.97e-05	0.0772	ATCCCAAACACCAGCAGATC
RREB1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr18:11860124..11860238,+__1883.1.1.0	68	87	+	2.42202	9.97e-05	0.0772	ATCCCAAACACCAGCAGATC
MYBL2	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.1.0	98	112	+	8.39344	9.97e-05	1	AACCGTCAAAATGTC
MYBL2	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr5:156390202..156390316,-__1640.1.0.0	98	112	+	8.39344	9.97e-05	1	AACCGTCAAAATGTC
STAT3	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	10	20	+	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	16	26	+	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	16	26	+	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	16	26	+	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE__Lincrna.noflip.NA__chr14:106938438..106938552,+__281.1.0.0	8	18	-	10.3878	9.97e-05	0.352	CTGTCGGGAAG
STAT3	WILDTYPE__Antisense.noflip.NA__chr3:139108607..139108721,+__550.1.0.0	30	40	+	10.3878	9.97e-05	0.352	CTGTCGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	59	69	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	59	69	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.0	74	84	-	10.3878	9.97e-05	0.352	GATCTGGGAAG
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.0.0	74	84	-	10.3878	9.97e-05	0.352	GATCTGGGAAG
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.2.1	74	84	-	10.3878	9.97e-05	0.352	GATCTGGGAAG
STAT3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:11665897..11666011,+__1685.1.1.0	74	84	-	10.3878	9.97e-05	0.352	GATCTGGGAAG
STAT3	WILDTYPE__Lincrna.noflip.NA__chr14:106938369..106938483,+__280.1.0.0	77	87	-	10.3878	9.97e-05	0.352	CTGTCGGGAAG
STAT3	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	89	99	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	95	105	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	95	105	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
STAT3	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	95	105	-	10.3878	9.97e-05	0.352	CATCCGGGAAT
GSX2	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.0.0	34	43	+	9.39623	9.97e-05	1	TGTAATTAAA
GSX2	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr16:75410781..75410895,+__1952.1.1.0	34	43	+	9.39623	9.97e-05	1	TGTAATTAAA
ESRRB	FLIPPED__mrna.flip.antisense__chr5:145562057..145562171,+__2463.1.0.0	33	43	-	7.41379	9.97e-05	1	CCAGGGTCATT
ESRRB	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.1.0	72	82	+	7.41379	9.97e-05	1	CCAGGGTCATT
ESRRB	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr5:145562057..145562171,-__1089.1.0.0	72	82	+	7.41379	9.97e-05	1	CCAGGGTCATT
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	14	23	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	FLIPPED__Lincrna.flip.antisense__chr2:171627474..171627588,-__2665.1.0.0	14	23	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	42	51	+	9.79839	9.97e-05	0.0531	GGCACGCGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	42	51	+	9.79839	9.97e-05	0.0531	GGCACGCGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	45	54	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	45	54	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.1.0	42	51	-	9.79839	9.97e-05	0.0531	TCCGCGTGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr8:145747848..145747962,+__1694.1.0.0	42	51	-	9.79839	9.97e-05	0.0531	TCCGCGTGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.1.0	45	54	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:192110125..192110239,+__1553.1.0.0	45	54	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	59	68	+	9.79839	9.97e-05	0.0531	GCCGCGTGCA
Tcfl5	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	59	68	-	9.79839	9.97e-05	0.0531	TGCACGCGGC
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	92	101	+	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	96	105	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	96	105	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	96	105	+	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE__Lincrna.flip.sense__chr2:171627474..171627588,+__405.1.0.0	92	101	-	9.79839	9.97e-05	0.0531	GGCGCGTGGA
Tcfl5	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	96	105	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.2.0	96	105	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
Tcfl5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	96	105	-	9.79839	9.97e-05	0.0531	TCCACGCGCC
BATF3	WILDTYPE__Lincrna.flip.sense__chr1:53704189..53704303,+__82.1.0.0	23	36	-	-0.712121	9.98e-05	0.271	ACCTGACGTCACTT
BATF3	FLIPPED__mrna.flip.antisense__chr1:53704155..53704269,+__2476.1.0.0	57	70	-	-0.712121	9.98e-05	0.271	ACCTGACGTCACTT
BATF3	WILDTYPE__mrna.flip.sense__chr1:53704155..53704269,-__1140.1.0.0	45	58	+	-0.712121	9.98e-05	0.271	ACCTGACGTCACTT
BATF3	FLIPPED__Lincrna.flip.antisense__chr1:53704189..53704303,-__2624.1.0.0	79	92	+	-0.712121	9.98e-05	0.271	ACCTGACGTCACTT
Rfx1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr22:35653411..35653525,+__1603.1.1.0	51	64	+	9.25862	9.98e-05	0.338	GGCTCCCTGGCTGC
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.0	9	25	+	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.0.0	9	25	+	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.2.1	9	25	+	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:2936563..2936677,+__626.1.1.0	9	25	+	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	FLIPPED__mrna.flip.antisense__chr4:2936517..2936631,+__2508.1.0.0	55	71	+	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	WILDTYPE__mrna.flip.sense__chr4:2936517..2936631,-__1199.1.0.0	44	60	-	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
SP4	FLIPPED__Antisense.flip.antisense__chr4:2936563..2936677,-__2694.1.0.0	90	106	-	2.34545	9.98e-05	0.0367	ACGGCCACGCCCGGCCA
MEF2A	WILDTYPE_SNP_INDIV__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.1.0	11	22	+	7.8871	9.98e-05	1	ATTAAAATTAGC
MEF2A	WILDTYPE_BUT_HAS_SNP__Enhancer.flip.sense__chr17:9687985..9688099,-__2067.1.0.0	11	22	+	7.8871	9.98e-05	1	ATTAAAATTAGC
MEF2A	WILDTYPE__Enhancer.flip.sense__chr17:9688051..9688165,+__1774.1.0.0	27	38	-	7.8871	9.98e-05	1	ATTAAAATTAGC
MEF2A	FLIPPED__Enhancer.flip.antisense__chr17:9688051..9688165,-__2831.1.0.0	77	88	+	7.8871	9.98e-05	1	ATTAAAATTAGC
MEF2A	FLIPPED__Enhancer.flip.antisense__chr17:9687985..9688099,+__2547.1.0.0	93	104	-	7.8871	9.98e-05	1	ATTAAAATTAGC
ELK4	WILDTYPE__Lincrna.noflip.NA__chr8:6693009..6693123,-__867.1.0.0	36	46	-	10.4364	9.98e-05	0.0815	AGGTTTCCGGC
TP73	WILDTYPE__mrna.noflip.NA__chr3:49459858..49459972,-__1332.1.0.0	23	40	+	7.48077	9.98e-05	0.752	TACATCTCCCGGCGTGCC
Twist2	WILDTYPE__Enhancer.noflip.NA__chr18:3595535..3595649,-__2177.1.0.0	3	12	-	11.2131	9.98e-05	1	CACACATGTT
Twist2	WILDTYPE__Enhancer.noflip.NA__chr18:3595543..3595657,+__1884.1.0.0	95	104	+	11.2131	9.98e-05	1	CACACATGTT
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.1.0	87	100	+	1.34545	9.98e-05	0.277	CAGAACCGGAAGCG
SPI1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.1	87	100	+	1.34545	9.98e-05	0.277	CAGAACCGGAAGCG
SPI1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.0.0	87	100	+	1.34545	9.98e-05	0.277	CAGAACCGGAAGCG
SPI1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr9:35604089..35604203,+__1985.1.2.0	87	100	+	1.34545	9.98e-05	0.277	CAGAACCGGAAGCG
E2F1	FLIPPED__mrna.flip.antisense__chr19:12992259..12992373,+__2457.1.0.0	9	20	-	10.2459	9.98e-05	0.458	AAAGGCGCCAGG
E2F1	WILDTYPE__Lincrna.noflip.NA__chr12:54519861..54519975,+__239.1.0.0	54	65	-	10.2459	9.98e-05	0.458	TGAGGCGCCCCT
E2F1	WILDTYPE__mrna.flip.sense__chr19:12992259..12992373,-__1046.1.0.0	95	106	+	10.2459	9.98e-05	0.458	AAAGGCGCCAGG
TGIF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.1.0	9	20	+	-1.44231	9.98e-05	0.932	AGGCAGCTGACA
TGIF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr10:90967036..90967150,-__1449.1.0.0	9	20	+	-1.44231	9.98e-05	0.932	AGGCAGCTGACA
Dmbx1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.0.0	7	23	+	10.6316	9.98e-05	1	TGCATTGGATTAGTCAT
Dmbx1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr5:38468371..38468485,-__690.1.1.0	7	23	+	10.6316	9.98e-05	1	TGCATTGGATTAGTCAT
Dmbx1	WILDTYPE__Antisense.noflip.NA__chr5:38468433..38468547,-__691.1.0.0	69	85	+	10.6316	9.98e-05	1	TGCATTGGATTAGTCAT
ZBTB7B	WILDTYPE__Lincrna.noflip.NA__chr5:180257880..180257994,+__677.1.0.0	22	33	-	9.63793	9.98e-05	0.365	TCAACCCCCACC
ZBTB7B	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.0.0	58	69	-	9.63793	9.98e-05	0.365	CCGCCCCCCGGC
ZBTB7B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr8:96280983..96281097,+__884.1.1.0	58	69	-	9.63793	9.98e-05	0.365	CCGCCCCCCGGC
ZBTB7B	WILDTYPE__mrna.noflip.NA__chr7:128502797..128502911,+__1383.1.0.0	70	81	-	9.63793	9.98e-05	0.365	TCAACCCCCACC
GCM2	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.1.0	13	22	+	10.5902	9.98e-05	0.727	CATGAGGGTG
GCM2	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr21:16254290..16254404,-__493.1.0.0	13	22	+	10.5902	9.98e-05	0.727	CATGAGGGTG
GCM2	WILDTYPE__Lincrna.noflip.NA__chr19:54367930..54368044,+__385.1.0.0	1	10	-	10.5902	9.98e-05	0.727	CATGAGGGTG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:185344846..185344960,-__2313.1.0.0	39	50	+	10.6	9.98e-05	0.0959	GGCCCTGAGGGA
TFAP2B	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr15:48624018..48624132,-__322.1.2.0	82	93	+	10.6	9.98e-05	0.0959	CGCCTCAAGCCG
TFAP2B	WILDTYPE__Enhancer.noflip.NA__chr1:185344868..185344982,+__2020.1.0.0	43	54	-	10.6	9.98e-05	0.0959	GGCCCTGAGGGA
MLXIPL	WILDTYPE__Lincrna.noflip.NA__chr9:74920272..74920386,+__910.1.0.0	22	31	+	10.803	9.98e-05	0.317	AACACGTGGA
MLXIPL	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.1.0	29	38	-	10.803	9.98e-05	0.317	AACACGTGGA
MLXIPL	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr9:132251325..132251439,+__898.1.0.0	29	38	-	10.803	9.98e-05	0.317	AACACGTGGA
REST	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.2.0	33	53	-	4.03061	9.98e-05	0.252	TATAGGAGCTCGGCCCGCTCC
REST	WILDTYPE_SNP_INDIV__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.3.0	33	53	-	4.03061	9.98e-05	0.252	TATAGGAGCTCGGCCCGCTCC
REST	WILDTYPE_BUT_HAS_SNP__Lincrna.flip.sense__chr16:2014868..2014982,+__341.1.0.0	33	53	-	4.03061	9.98e-05	0.252	TATAGGAGCTCGGCCCGCTCC
REST	FLIPPED__Lincrna.flip.antisense__chr16:2014868..2014982,-__2651.1.0.0	62	82	+	4.03061	9.98e-05	0.252	TATAGGAGCTCGGCCCGCTCC
TFAP2C	FLIPPED__Antisense.flip.antisense__chr19:54960184..54960298,+__2375.1.0.0	21	32	+	10.5918	9.98e-05	0.0879	CCCCTCGGGGCC
TFAP2C	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.2.0	83	94	-	10.5918	9.98e-05	0.0879	CCCCTCGGGGCC
TFAP2C	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr19:54960184..54960298,-__386.1.0.0	83	94	-	10.5918	9.98e-05	0.0879	CCCCTCGGGGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.0	3	13	-	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.0.0	3	13	-	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.2.0	3	13	-	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.1.0	3	13	-	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr17:34900775..34900889,+__1038.1.3.1	3	13	-	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.1.0	31	41	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946884..42946998,-__1669.1.0.0	31	41	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.1.0	33	43	+	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.0.0	33	43	+	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:40006352..40006466,-__1572.1.3.0	33	43	+	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr7:1609638..1609752,+__789.1.0.0	46	56	+	9.03636	9.98e-05	0.0257	ACGCGGGCCCG
NRF1	WILDTYPE__Enhancer.noflip.NA__chr9:132175933..132176047,-__2299.1.0.0	65	75	+	9.03636	9.98e-05	0.0257	CCGCTCGCGCC
NRF1	FLIPPED__Antisense.flip.antisense__chr7:1609638..1609752,-__2719.1.0.0	59	69	-	9.03636	9.98e-05	0.0257	ACGCGGGCCCG
NRF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.1	70	80	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.2.0	70	80	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
NRF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.1.0	70	80	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
NRF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr6:42946923..42947037,-__1670.1.0.0	70	80	+	9.03636	9.98e-05	0.0257	GCCCTCGCGCA
FLI1	WILDTYPE__mrna.noflip.NA__chr3:48514465..48514579,-__1341.1.0.0	14	23	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Enhancer.noflip.NA__chr2:208176289..208176403,+__1784.1.0.0	15	24	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Enhancer.noflip.NA__chr4:185775943..185776057,+__1803.1.0.0	34	43	+	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Enhancer.noflip.NA__chr2:208176235..208176349,-__2077.1.0.0	37	46	+	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Antisense.noflip.NA__chr4:177241613..177241727,-__620.1.0.0	75	84	+	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.0.0	66	75	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr4:186732868..186732982,-__1385.1.1.0	66	75	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	68	77	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.1	68	77	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	68	77	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	68	77	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.1.0	68	77	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Enhancer.noflip.NA__chr4:185775956..185776070,-__2096.1.0.0	85	94	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__mrna.noflip.NA__chr3:114012795..114012909,+__1070.1.0.0	85	94	-	10.383	9.99e-05	0.142	ACAGGAAGCA
FLI1	WILDTYPE__Antisense.noflip.NA__chr1:51983864..51983978,+__81.1.0.0	104	113	+	10.383	9.99e-05	0.142	ACAGGAAGCA
SREBF1	WILDTYPE__Antisense.noflip.NA__chr12:112279665..112279779,-__209.1.0.0	16	25	-	10.3902	9.99e-05	0.472	CTCACGCGAG
SREBF1	WILDTYPE__Antisense.flip.sense__chr12:112279699..112279813,-__210.1.0.0	50	59	-	10.3902	9.99e-05	0.472	CTCACGCGAG
SREBF1	FLIPPED__Antisense.flip.antisense__chr12:112279699..112279813,+__2350.1.0.0	56	65	+	10.3902	9.99e-05	0.472	CTCACGCGAG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.1.0	30	40	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:134204822..134204936,+__1614.1.0.0	30	40	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	FLIPPED__mrna.flip.antisense__chr3:134204792..134204906,+__2538.1.0.0	60	70	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.0	66	76	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.0.0	66	76	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204786..134204900,+__1613.1.1.1	66	76	-	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	FLIPPED__mrna.flip.antisense__chr3:134204786..134204900,-__2822.1.0.0	39	49	+	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.0.0	45	55	+	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.1	45	55	+	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr3:134204792..134204906,-__1612.1.1.0	45	55	+	10.1837	9.99e-05	0.239	GACACGTGATG
USF1	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.1.0	104	114	+	10.1837	9.99e-05	0.239	GGCAGGTGGCC
USF1	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr1:183605164..183605278,+__1425.1.0.0	104	114	+	10.1837	9.99e-05	0.239	GGCAGGTGGCC
TFE3	FLIPPED__mrna.flip.antisense__chr15:91478435..91478549,-__2781.1.0.0	8	17	-	10.6939	9.99e-05	0.173	GGCACGAGAC
TFE3	WILDTYPE__mrna.flip.sense__chr15:91478435..91478549,+__1166.1.0.0	98	107	+	10.6939	9.99e-05	0.173	GGCACGAGAC
TFE3	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.1	95	104	-	10.6939	9.99e-05	0.173	GCCCCGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.2.0	95	104	-	10.6939	9.99e-05	0.173	GCCCCGTGAC
TFE3	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.1.0	95	104	-	10.6939	9.99e-05	0.173	GCCCCGTGAC
TFE3	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr21:40555305..40555419,-__1593.1.0.0	95	104	-	10.6939	9.99e-05	0.173	GCCCCGTGAC
TFAP2C(var.3)	WILDTYPE__mrna.noflip.NA__chr20:49307851..49307965,-__1339.1.0.0	55	67	-	8.67241	9.99e-05	0.0586	GCCCTGCCGGGCT
TFAP2C(var.3)	WILDTYPE__Lincrna.noflip.NA__chrX:11129223..11129337,-__926.1.0.0	61	73	-	8.67241	9.99e-05	0.0586	GGCCTGGAGGGGC
TFAP2C(var.3)	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.1	81	93	-	8.67241	9.99e-05	0.0586	TCCCCAGCAGGCG
TFAP2C(var.3)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr5:131705263..131705377,-__657.1.1.0	81	93	-	8.67241	9.99e-05	0.0586	TCCCCAGCAGGCG
TFAP2A(var.2)	WILDTYPE__mrna.flip.sense__chr11:64013292..64013406,-__1151.1.0.0	27	38	+	10.6364	9.99e-05	0.0586	CCCCGGGGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.0.0	21	32	-	10.6364	9.99e-05	0.0586	CCCCGGGGGGCA
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr11:64013348..64013462,+__188.1.1.0	21	32	-	10.6364	9.99e-05	0.0586	CCCCGGGGGGCA
TFAP2A(var.2)	WILDTYPE__Lincrna.noflip.NA__chr9:128003872..128003986,+__890.1.0.0	36	47	+	10.6364	9.99e-05	0.0586	GACCCCGAGGCA
TFAP2A(var.2)	FLIPPED__Antisense.flip.antisense__chr11:64013348..64013462,-__2633.1.0.0	83	94	+	10.6364	9.99e-05	0.0586	CCCCGGGGGGCA
TFAP2A(var.2)	FLIPPED__mrna.flip.antisense__chr11:64013292..64013406,+__2481.1.0.0	77	88	-	10.6364	9.99e-05	0.0586	CCCCGGGGGGCA
TFAP2A(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.0.0	79	90	-	10.6364	9.99e-05	0.0586	CGCCCCAAAGCG
TFAP2A(var.2)	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr22:45559619..45559733,-__532.1.1.0	79	90	-	10.6364	9.99e-05	0.0586	CGCCCCAAAGCG
ZIC4	FLIPPED__Antisense.flip.antisense__chr7:100450224..100450338,+__2422.1.0.0	54	68	-	9.58182	9.99e-05	0.116	CCCGCCCCATGGCGC
ZIC4	WILDTYPE__Antisense.flip.sense__chr7:100450224..100450338,-__763.1.0.0	47	61	+	9.58182	9.99e-05	0.116	CCCGCCCCATGGCGC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.1.0	72	86	+	9.58182	9.99e-05	0.116	CCCCACCCACTGACC
ZIC4	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.1	72	86	+	9.58182	9.99e-05	0.116	CCCCACCCACTGACC
ZIC4	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.0.0	72	86	+	9.58182	9.99e-05	0.116	CCCCACCCACTGACC
ZIC4	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr12:8834116..8834230,+__1396.1.2.0	72	86	+	9.58182	9.99e-05	0.116	CCCCACCCACTGACC
EBF1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.0.0	44	57	+	8.09836	9.99e-05	0.382	AGCGCCCTGGGACT
EBF1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr2:177502682..177502796,-__413.1.1.0	44	57	+	8.09836	9.99e-05	0.382	AGCGCCCTGGGACT
Sox1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.0.0	7	21	+	1.67241	9.99e-05	1	GACAGTGACAGTGTT
Sox1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:147618008..147618122,+__1723.1.1.0	7	21	+	1.67241	9.99e-05	1	GACAGTGACAGTGTT
NR3C1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.3.0	78	94	-	3.77551	9.99e-05	1	GAGAACATCCAGTACAC
NR3C1	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.2.0	78	94	-	3.77551	9.99e-05	1	GAGAACATCCAGTACAC
NR3C1	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:117602051..117602165,-__9.1.0.0	78	94	-	3.77551	9.99e-05	1	GAGAACATCCAGTACAC
SP8	WILDTYPE__mrna.noflip.NA__chr1:212606145..212606259,+__965.1.0.0	52	63	-	10.1316	9.99e-05	0.0405	GCCCCGCGCCCA
TBX19	WILDTYPE__mrna.noflip.NA__chr4:95263952..95264066,-__1087.1.0.0	34	53	-	8.34146	9.99e-05	1	TATGACGAGTAAGTGATAAT
Gabpa	WILDTYPE__Lincrna.noflip.NA__chr3:196359454..196359568,-__574.1.0.0	23	33	+	10.0984	9.99e-05	0.0798	CCGGAAGGAAA
Gabpa	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.1.0	35	45	+	10.0984	9.99e-05	0.0798	CAGGAAGCTGC
Gabpa	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr12:68383179..68383293,+__247.1.0.0	35	45	+	10.0984	9.99e-05	0.0798	CAGGAAGCTGC
Gabpa	WILDTYPE__Lincrna.flip.sense__chrX:57147952..57148066,+__940.1.0.0	45	55	-	10.0984	9.99e-05	0.0798	CAGGAAGCTGC
Gabpa	FLIPPED__Lincrna.flip.antisense__chrX:57147952..57148066,-__2736.1.0.0	60	70	+	10.0984	9.99e-05	0.0798	CAGGAAGCTGC
ZBTB7A	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.1.0	17	28	-	10.1429	9.99e-05	0.24	GGCGCCGACCCG
ZBTB7A	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr6:153304788..153304902,+__737.1.0.0	17	28	-	10.1429	9.99e-05	0.24	GGCGCCGACCCG
ZBTB7A	FLIPPED__Antisense.flip.antisense__chr6:153304788..153304902,-__2713.1.0.0	87	98	+	10.1429	9.99e-05	0.24	GGCGCCGACCCG
ZBTB7A	WILDTYPE__Antisense.noflip.NA__chr2:173421137..173421251,-__406.1.0.0	95	106	+	10.1429	9.99e-05	0.24	GGCGCCGACCCG
RARA(var.2)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.0.0	75	91	+	1.88525	9.99e-05	0.57	GGGTCATAAAAATGGCG
RARA(var.2)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:200820436..200820550,+__1554.1.1.0	75	91	+	1.88525	9.99e-05	0.57	GGGTCATAAAAATGGCG
E2F7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.1.0	50	63	-	-6.40984	9.99e-05	1	CGCTCCCGCGACAT
E2F7	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.3.0	50	63	-	-6.40984	9.99e-05	1	CGCTCCCGCGACAT
E2F7	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr4:120988033..120988147,+__603.1.0.0	50	63	-	-6.40984	9.99e-05	1	CGCTCCCGCGACAT
ETV5	WILDTYPE__Lincrna.noflip.NA__chr5:98264795..98264909,+__723.1.0.0	69	78	+	10.8545	9.99e-05	0.146	GGCGGATGCG
ETV5	WILDTYPE__mrna.noflip.NA__chr12:49582776..49582890,-__1287.1.0.0	10	19	-	10.8545	9.99e-05	0.146	GGCGGATGCG
ETV5	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:52321773..52321887,+__1628.1.1.0	11	20	-	10.8545	9.99e-05	0.146	GGCGGATGCG
ZBTB33	WILDTYPE__mrna.noflip.NA__chrX:77395103..77395217,-__1246.1.0.0	51	65	-	9.43939	9.99e-05	0.133	AGCTCGCGGGCTCCT
KLF16	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.1.0	10	20	-	9.72414	9.99e-05	0.0277	GAACCGCCCCT
KLF16	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr18:44702698..44702812,-__1533.1.0.0	10	20	-	9.72414	9.99e-05	0.0277	GAACCGCCCCT
KLF16	WILDTYPE__Antisense.noflip.NA__chr9:14317006..14317120,+__905.1.0.0	22	32	+	9.72414	9.99e-05	0.0277	ACACCACCCCC
REL	WILDTYPE__Enhancer.noflip.NA__chr5:34586386..34586500,+__1912.1.0.0	74	83	-	10.6869	9.99e-05	0.346	TGGCATTTCC
ATF7	WILDTYPE__Enhancer.noflip.NA__chr17:56736826..56736940,-__2171.1.0.0	36	49	-	6.4	9.99e-05	0.265	TAGTAACGTCACCA
ATF7	WILDTYPE__Enhancer.noflip.NA__chr17:56736830..56736944,+__1878.1.0.0	62	75	+	6.4	9.99e-05	0.265	TAGTAACGTCACCA
NFE2	WILDTYPE__Enhancer.noflip.NA__chr14:69199970..69200084,-__2157.1.0.0	14	24	+	4.4898	0.0001	0.416	CTTGACTCACC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr15:91208897..91209011,+__1869.1.0.0	7	20	-	7.11475	0.0001	0.189	AACCCCCTGCGCAT
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.1	47	60	-	7.11475	0.0001	0.189	GCCCCCCTGGGGGC
GLIS2	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.1.0	47	60	-	7.11475	0.0001	0.189	GCCCCCCTGGGGGC
GLIS2	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr15:100273601..100273715,-__1023.1.0.0	47	60	-	7.11475	0.0001	0.189	GCCCCCCTGGGGGC
GLIS2	WILDTYPE__Antisense.noflip.NA__chr6:36164943..36165057,-__750.1.0.0	96	109	-	7.11475	0.0001	0.189	CCCCTCCCGCAGCC
GLIS2	FLIPPED__mrna.flip.antisense__chr15:100273601..100273715,+__2453.1.0.0	55	68	+	7.11475	0.0001	0.189	GCCCCCCTGGGGGC
GLIS2	WILDTYPE_SNP_PLUS_HAPLO__mrna.noflip.NA__chr6:32119681..32119795,-__1665.1.2.1	56	69	+	7.11475	0.0001	0.189	CCCCCCCCCCGTGC
GLIS2	WILDTYPE__Enhancer.noflip.NA__chr15:91208884..91208998,-__2162.1.0.0	82	95	+	7.11475	0.0001	0.189	AACCCCCTGCGCAT
Myod1	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.0.0	87	99	-	10.7143	0.0001	0.202	TGCAGCTGGTGGC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.0	87	99	-	10.7143	0.0001	0.202	TGCAGCTGGTGGC
Myod1	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.1.0	87	99	-	10.7143	0.0001	0.202	TGCAGCTGGTGGC
Myod1	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr17:46102652..46102766,+__1771.1.2.1	87	99	-	10.7143	0.0001	0.202	TGCAGCTGGTGGC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:62679820..62679934,+__1824.1.0.0	13	26	+	10.2885	0.0001	0.257	TGTTGGTGACTAAT
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554557..89554671,-__2052.1.1.0	58	71	-	10.2885	0.0001	0.257	AGAGGGTGAGACAC
JUN(var.2)	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr12:89554519..89554633,+__1759.1.1.0	82	95	+	10.2885	0.0001	0.257	AGAGGGTGAGACAC
JUN(var.2)	WILDTYPE__Enhancer.noflip.NA__chr8:62679813..62679927,-__2117.1.0.0	82	95	-	10.2885	0.0001	0.257	TGTTGGTGACTAAT
ERG	FLIPPED__Antisense.flip.antisense__chr4:68566999..68567113,-__2702.1.0.0	36	45	+	10.8	0.0001	0.154	GCCGGATGCG
ERG	FLIPPED__mrna.flip.antisense__chr1:156698202..156698316,+__2533.1.0.0	43	52	+	10.8	0.0001	0.154	GCCGGATGCG
ERG	FLIPPED__mrna.flip.antisense__chr2:3605885..3605999,+__2498.1.0.0	40	49	-	10.8	0.0001	0.154	GACGGAAGTG
ERG	FLIPPED__mrna.flip.antisense__chr1:156698181..156698295,-__2813.1.0.0	42	51	-	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.1.0	64	73	+	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698181..156698295,+__1420.1.0.0	64	73	+	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_SNP_PLUS_HAPLO__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.1	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE__mrna.noflip.NA__chr2:60778007..60778121,-__1233.1.0.0	66	75	+	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.2.0	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.1.0	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.0.0	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.3.0	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr2:3605885..3605999,-__1181.1.4.0	66	75	+	10.8	0.0001	0.154	GACGGAAGTG
ERG	WILDTYPE_BUT_HAS_SNP__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.0.0	63	72	-	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_SNP_INDIV__mrna.flip.sense__chr1:156698202..156698316,-__1419.1.1.0	63	72	-	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.0.0	70	79	-	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr4:68566999..68567113,+__640.1.1.0	70	79	-	10.8	0.0001	0.154	GCCGGATGCG
ERG	WILDTYPE__mrna.noflip.NA__chr12:110486324..110486438,-__1234.1.0.0	100	109	+	10.8	0.0001	0.154	GACGGAAGTG
CLOCK	WILDTYPE__Enhancer.flip.sense__chr8:59309342..59309456,+__1920.1.0.0	32	41	+	10.5	0.0001	0.61	GACATGTGTC
CLOCK	FLIPPED__Enhancer.flip.antisense__chr8:59309342..59309456,-__2886.1.0.0	74	83	-	10.5	0.0001	0.61	GACATGTGTC
IRF7	WILDTYPE_BUT_HAS_SNP__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.0.0	6	19	+	7.64516	0.0001	0.823	CCCAAACTGGAAAT
IRF7	WILDTYPE_SNP_PLUS_HAPLO__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.1	6	19	+	7.64516	0.0001	0.823	CCCAAACTGGAAAT
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.2.0	6	19	+	7.64516	0.0001	0.823	CCCAAACTGGAAAT
IRF7	WILDTYPE_SNP_INDIV__Enhancer.noflip.NA__chr20:25218583..25218697,-__2252.1.1.0	6	19	+	7.64516	0.0001	0.823	CCCAAACTGGAAAT
IRF7	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr2:103039540..103039654,+__1545.1.1.0	42	55	-	7.64516	0.0001	0.823	AACAAAGTGCAACT
TFAP2A(var.3)	WILDTYPE_SNP_INDIV__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.1.0	85	97	+	9.27869	0.0001	0.0594	GCCCTGCAGGGCG
TFAP2A(var.3)	WILDTYPE_BUT_HAS_SNP__mrna.noflip.NA__chr3:9291316..9291430,-__1307.1.0.0	85	97	+	9.27869	0.0001	0.0594	GCCCTGCAGGGCG
TFAP2A(var.3)	WILDTYPE__Lincrna.noflip.NA__chr15:29967114..29967228,+__311.1.0.0	92	104	+	9.27869	0.0001	0.0594	CCCCCGCCGGGGC
TFAP2A(var.3)	WILDTYPE__Antisense.noflip.NA__chr22:46465717..46465831,-__533.1.0.0	99	111	-	9.27869	0.0001	0.0594	GCCCTCCTGGGCA
Srebf1(var.2)	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr2:38466697..38466811,-__436.1.0.0	81	90	-	9.12069	0.0001	0.261	CTCGCGTGAC
EGR1	FLIPPED__mrna.flip.antisense__chr11:10562699..10562813,+__2479.1.0.0	14	27	+	9.40385	0.0001	0.0325	CCTCAGCCCACAGC
EGR1	WILDTYPE_BUT_HAS_SNP__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.0.0	26	39	-	9.40385	0.0001	0.0325	CCTCCTCCTTCACC
EGR1	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr4:152330009..152330123,-__613.1.1.0	26	39	-	9.40385	0.0001	0.0325	CCTCCTCCTTCACC
EGR1	FLIPPED__Antisense.flip.antisense__chr15:50647384..50647498,-__2648.1.0.0	27	40	-	9.40385	0.0001	0.0325	TTTCCGCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.1.0	75	88	+	9.40385	0.0001	0.0325	TTTCCGCCTCTGCC
EGR1	WILDTYPE_SNP_PLUS_HAPLO__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.1	75	88	+	9.40385	0.0001	0.0325	TTTCCGCCTCTGCC
EGR1	WILDTYPE_SNP_INDIV__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.2.0	75	88	+	9.40385	0.0001	0.0325	TTTCCGCCTCTGCC
EGR1	WILDTYPE_BUT_HAS_SNP__Antisense.flip.sense__chr15:50647384..50647498,+__323.1.0.0	75	88	+	9.40385	0.0001	0.0325	TTTCCGCCTCTGCC
EGR1	WILDTYPE__mrna.flip.sense__chr11:10562699..10562813,-__1148.1.0.0	88	101	-	9.40385	0.0001	0.0325	CCTCAGCCCACAGC
SPDEF	WILDTYPE_SNP_INDIV__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.0	58	68	-	9.36364	0.0001	0.282	GCCCGGAAGCA
SPDEF	WILDTYPE_BUT_HAS_SNP__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.0.0	58	68	-	9.36364	0.0001	0.282	GCCCGGAAGCA
SPDEF	WILDTYPE_SNP_PLUS_HAPLO__Antisense.noflip.NA__chr1:152161701..152161815,+__22.1.1.1	58	68	-	9.36364	0.0001	0.282	GCCCGGAAGCA
RARA::RXRA	WILDTYPE_SNP_INDIV__Lincrna.noflip.NA__chr5:9546328..9546442,+__721.1.2.0	38	54	-	8.90816	0.0001	0.405	GGGGCTCGGGCAGGTCA
